Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 29 of 120
Found at i:3182917 original size:45 final size:45
Alignment explanation
Indices: 3182863--3182987 Score: 133
Period size: 45 Copynumber: 2.8 Consensus size: 45
3182853 GGCTACGCTT
* * * * * ***
3182863 TGGTACGGGCACTTGCCTCGACCGCCATCGGCCCAAGCTGGGTGC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
* * *
3182908 TGGTGCGGGCGGTTACCTCGACCACCATCGGGACAAGATGGCCCC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
* *
3182953 TTGTGCGGGCAGTTGCCTTGACCACCATCGGCACA
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACA
3182988 TGCCGAGCCC
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (45 bp):
TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
Found at i:3183468 original size:26 final size:26
Alignment explanation
Indices: 3183430--3183482 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3183420 GCACTCTAAT
*
3183430 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
3183456 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
3183482 C
1 C
3183483 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:3183812 original size:27 final size:28
Alignment explanation
Indices: 3183782--3183838 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
3183772 CCGATTCGAT
3183782 CTTAGGAAT-GGGAATTG-ACTCCGTATG
1 CTTAGGAATGGGGAA-TGAACTCCGTATG
* *
3183809 CTTAGGACTGGGGGATGAACTCCGTATG
1 CTTAGGAATGGGGAATGAACTCCGTATG
3183837 CT
1 CT
3183839 AAGTCAACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (28 bp):
CTTAGGAATGGGGAATGAACTCCGTATG
Found at i:3184822 original size:45 final size:45
Alignment explanation
Indices: 3184780--3184931 Score: 164
Period size: 45 Copynumber: 3.4 Consensus size: 45
3184770 GTTCGGGCAC
* *
3184780 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
** * *
3184825 TTGCCTCGACCACCATCAACACAAGAT-GGCCCTTGGTGCAGACGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGGGCGG
* * * * * *
3184870 TTGCATTGAACC-CCATCGGCACATGTTGGGCCGTGGTGTGGGCGG
1 TTGCCTCG-ACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
3184915 TTGCCTCGACCACCATC
1 TTGCCTCGACCACCATC
3184932 AACACATGCC
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 8 0.09
45 70 0.82
46 7 0.08
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
Found at i:3185019 original size:63 final size:63
Alignment explanation
Indices: 3184920--3185053 Score: 162
Period size: 63 Copynumber: 2.1 Consensus size: 63
3184910 GGCGGTTGCC
* *
3184920 TCGACCACCATCAACACATGCCGAGCTCCAGTCGACCTCCGAAACGAGCGTGTAAGCACCAAA
1 TCGACCACCATCAACACATGCCGAGCTCCAGTCGACCCCCGAAACGAGCGTGCAAGCACCAAA
** * * * * *
3184983 TCGACCACCATCGGCACATGTCGAGC-CCTGATCGACCCCCGAAATGATCGTGCGAGCACCAAA
1 TCGACCACCATCAACACATGCCGAGCTCCAG-TCGACCCCCGAAACGAGCGTGCAAGCACCAAA
*
3185046 CCGACCAC
1 TCGACCAC
3185054 TGGGGGTGGG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 3 0.05
63 57 0.95
ACGTcount: A:0.29, C:0.38, G:0.20, T:0.13
Consensus pattern (63 bp):
TCGACCACCATCAACACATGCCGAGCTCCAGTCGACCCCCGAAACGAGCGTGCAAGCACCAAA
Found at i:3185440 original size:26 final size:26
Alignment explanation
Indices: 3185404--3185456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3185394 TCGGTTCGAT
*
3185404 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
3185430 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
3185456 C
1 C
3185457 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:3186510 original size:26 final size:26
Alignment explanation
Indices: 3186472--3186522 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3186462 CCAGTCTGAT
3186472 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* * *
3186498 CTTAGATTTGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACCCCGTAT
3186523 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:3186856 original size:25 final size:26
Alignment explanation
Indices: 3186828--3186879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3186818 CTGGTTCGAT
3186828 CTTAGACTA-GAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
3186853 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
3186879 C
1 C
3186880 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:3187936 original size:89 final size:90
Alignment explanation
Indices: 3187785--3187969 Score: 248
Period size: 89 Copynumber: 2.1 Consensus size: 90
3187775 GTACGAGCAC
* * * * *
3187785 TTGCCTCGATCGCCATCGGCACAAGCTAGGCCCTGGTACGGGAGGTTGCCTCGATCACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTACGGGAGGTTGCATCGAACACCATCGAC
3187850 ACATGCTGGCCCCTGGTGCGGG-GA
66 ACATGCTGGCCCCTGGTGCGGGTGA
* * *
3187874 TTGCCTCGACCACCATCGGCACAAGAT-GGTCCCTGGTGCGGGTGGTTGCATCGAACACCATCGG
1 TTGCCTCGACCACCATCGGCACAAGATAGG-CCCTGGTACGGGAGGTTGCATCGAACACCATCGA
* * *
3187938 CACATGCTGGGCCGTGGTGCGGGTGG
65 CACATGCTGGCCCCTGGTGCGGGTGA
3187964 TTGCCT
1 TTGCCT
3187970 TAACAACCGC
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 2 0.02
89 74 0.89
90 7 0.08
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTACGGGAGGTTGCATCGAACACCATCGAC
ACATGCTGGCCCCTGGTGCGGGTGA
Found at i:3187956 original size:45 final size:45
Alignment explanation
Indices: 3187785--3187969 Score: 219
Period size: 45 Copynumber: 4.1 Consensus size: 45
3187775 GTACGAGCAC
* * * * *
3187785 TTGCCTCGATCGCCATCGGCACAAGCTAGGCCCTGGTACGGGAGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * * * *
3187830 TTGCCTCGATCACCATCGACACATGCTGGCCCCTGGTGCGGG-GA
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * *
3187874 TTGCCTCGACCACCATCGGCACAAGATGGTCCCTGGTGCGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * *
3187919 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
3187964 TTGCCT
1 TTGCCT
3187970 TAACAACCGC
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
44 38 0.32
45 81 0.68
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.21
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
Found at i:3188474 original size:157 final size:158
Alignment explanation
Indices: 3188215--3188569 Score: 403
Period size: 157 Copynumber: 2.3 Consensus size: 158
3188205 GAGAGCTAGA
** ** * * * * * ** *
3188215 ATGCACAAGCTGAGGATCAGCCCGATCAACCTCTTCATGCTGCCAATCTCGTTGCGGGTCCCTTG
1 ATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCATGCCGTCGATCCCACTGCGGGTCCCTTA
* * * *
3188280 GTCCGGTTGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTG
66 GTCAGGTTAGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCAT-
*
3188345 AC-GGTGCTCAACCGATCGAAGAGACAGG
130 ACGGGCGCTCAACCGATCGAAGAGACAGG
*
3188373 ATG-ACCAAGCCAAGGATC-GACCCGATCCCCCT-TGCATGCCGTCGATCCCACTGCGGGTCCTT
1 ATGCA-CAAGCCAAGGATCAG-CCCGATCCCCCTCTGCATGCCGTCGATCCCACTGCGGGTCCCT
** *
3188435 TAGTCAGGTTAGGGCTTAGACCGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCA
64 TAGTCAGGTTAGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCA
** * **
3188500 TACGGGCGCTCAGTCGATCGGAGAGGTAGG
129 TACGGGCGCTCAACCGATCGAAGAGACAGG
* *
3188530 ATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGC
1 ATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCATGC
3188570 TATTGCCGTC
Statistics
Matches: 163, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 128 0.79
158 33 0.20
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCATGCCGTCGATCCCACTGCGGGTCCCTTA
GTCAGGTTAGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATA
CGGGCGCTCAACCGATCGAAGAGACAGG
Found at i:3188613 original size:26 final size:26
Alignment explanation
Indices: 3188584--3188636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3188574 GCCGTCCGAT
*
3188584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
3188610 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3188636 C
1 C
3188637 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3188969 original size:26 final size:26
Alignment explanation
Indices: 3188940--3188992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3188930 CCGATCTGAT
3188940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
3188966 CTTAGACTGGGGATGCACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3188992 C
1 C
3188993 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3190070 original size:45 final size:45
Alignment explanation
Indices: 3189969--3190095 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 45
3189959 GCTGGGCCCC
* * *
3189969 GGTGCGAGCGGTTGCCTC-AACCACCATCGGCACAAGATGGCTCCT
1 GGTGCGAGCGATTGCCTCGAA-CACCATCGGCACATGCTGGCTCCT
** * * * *
3190014 GGCACGGGCGATTGCATCGAACACCATCGGCACATGCTGGGTCGT
1 GGTGCGAGCGATTGCCTCGAACACCATCGGCACATGCTGGCTCCT
* *
3190059 GGTGCGAGCGATTGCCTCG-ACTACAATTGGCACATGC
1 GGTGCGAGCGATTGCCTCGAAC-ACCATCGGCACATGC
3190096 CGAGCCCCGA
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
44 2 0.03
45 61 0.94
46 2 0.03
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GGTGCGAGCGATTGCCTCGAACACCATCGGCACATGCTGGCTCCT
Found at i:3190559 original size:26 final size:26
Alignment explanation
Indices: 3190530--3190582 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3190520 CCAGTCCGAT
**
3190530 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
* *
3190556 CTTAGACCAGGAATGAACTCTGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
3190582 C
1 C
3190583 CTAAGTCATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACCAGGAATGAACTCCGTATG
Found at i:3190914 original size:26 final size:26
Alignment explanation
Indices: 3190885--3190937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3190875 TCGATCCGAT
3190885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3190911 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3190937 C
1 C
3190938 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3191244 original size:40 final size:40
Alignment explanation
Indices: 3191194--3191270 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
3191184 CGATGGTCCC
3191194 TGGTACGGGCGGTTGCATCGAA-CACCATCGACACATGCCA
1 TGGTACGGGCGGTTGCATC-AACCACCATCGACACATGCCA
* * *
3191234 TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG
1 TGGTACGGGCGGTTGCATCAACCACCATCGACACATG
3191271 TTGATCCCCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (40 bp):
TGGTACGGGCGGTTGCATCAACCACCATCGACACATGCCA
Found at i:3191896 original size:26 final size:26
Alignment explanation
Indices: 3191867--3191919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3191857 CCAATCCGAT
*
3191867 CTTAGACTGGAAATGAACTCCGTATA
1 CTTAGACTGGAAATGAACTCCATATA
**
3191893 CTTAGACTGGGGATGAACTCCATATA
1 CTTAGACTGGAAATGAACTCCATATA
3191919 C
1 C
3191920 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATA
Found at i:3192888 original size:45 final size:44
Alignment explanation
Indices: 3192812--3193054 Score: 166
Period size: 45 Copynumber: 5.4 Consensus size: 44
3192802 GGCGCATGCA
* * *
3192812 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCAGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCC-TTGGTACGGGC-GTTGCC
* * * *
3192857 TCGACCGCCATCGGCACAAGCTGGGCCTTGGTGCAGACGATTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTACGGGCG-TTGCC
* * * ** *
3192902 TCGATCACCATCGACACATGC-CAGCACTTGGTGCGGGCGATTGCC
1 TCGACCACCATCGGCACAAGCTGGGC-CTTGGTACGGGCG-TTGCC
* ** * * * *
3192947 TCGACCACCATCGACACAAAATGGCCCGTGGTAGGGGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTACGGGC-GTTGCC
* * * * * *
3192992 TCAAACACCATCGGCACATGCTGGGCCATGGTTCGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTACGGG-CGTTGCC
*
3193037 TCGACCACCATTGGCACA
1 TCGACCACCATCGGCACA
3193055 TGACGAGCCC
Statistics
Matches: 151, Mismatches: 41, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
44 3 0.02
45 143 0.95
46 5 0.03
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (44 bp):
TCGACCACCATCGGCACAAGCTGGGCCTTGGTACGGGCGTTGCC
Found at i:3193538 original size:26 final size:26
Alignment explanation
Indices: 3193509--3193561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3193499 CCCTTCCGAT
* * *
3193509 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3193535 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3193561 C
1 C
3193562 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3193878 original size:26 final size:26
Alignment explanation
Indices: 3193840--3193891 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3193830 CCGGACTGAT
* *
3193840 TTTAGACTAGGAATGATCTCCGTATG
1 TTTAGACTAGGAATAAACTCCGTATG
*
3193866 TTTAGACTGGGAATAAACTCCGTATG
1 TTTAGACTAGGAATAAACTCCGTATG
3193892 CCTAAGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
TTTAGACTAGGAATAAACTCCGTATG
Found at i:3194087 original size:333 final size:330
Alignment explanation
Indices: 3193361--3194122 Score: 821
Period size: 331 Copynumber: 2.3 Consensus size: 330
3193351 CTGATTGTCA
* * * * * *
3193361 CTTAGACAGGGAATGAACTCCGTATGCCGAAGTCAACCCATGAAATGAGCGTGCAGGCGTTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
** * * * * **
3193426 CGATTGAAGAGGTAGGATGTGCAAGC-CGAGGATCAACCCGGTCCCCATCTGTGTGCTACTGTCG
66 CGACCG-AGAGGTAGAATGCGCAAGCTAG-GGATCAACCCGATCCCCATCTACGTGCTACTGTCG
** * * *
3193490 ATCCCGCTGCCCTTCCGATCTTAGACTGGGAATGGACTTCGTATGCTTAGACTAGGAATGAACTC
129 ATCCCGCTGCCCGACCGATCTTAGACTAGGAATGGACTCCGTATGCTTAGACTAGGAATAAACTC
* * * * ** *
3193555 CGTATGCCTAAGTCAACCTATGAAATGAGCGTGTGGGCGCTAAGCCGACCGGAGGGCATAATGCG
194 CGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTAAGCCGACCGGAGGGCATAATGCA
*
3193620 CAAGTCAGGGATCGACCCAATCTCCCTCTATGTGCTGTCGATCCCGCTACCACAACCTCGGTCCG
259 CAAGTCAGGGATCGACCCAATCTCCCTCTACGTGCTGTCGATCCCGCTACCACAACCTCGGTCCG
3193685 ACTGGGG
324 ACTGGGG
* * * * * * * *
3193692 CTTAGACATGAAATGAACTCCTTATGGCTAAGCCAACCCACGAAACGAGCATGCTGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * * * *
3193757 CGGCCGTAGAGGCAGAATGCGTAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTACTGTCGA
66 CGACCG-AGAGGTAGAATGCGCAAGCTAGGGATCAACCCGATCCCCATCTACGTGCTACTGTCGA
* * * * *
3193822 TCCCGCTGCCGGACTGATTTTAGACTAGGAAT-GATCTCCGTATGTTTAGACTGGGAATAAACTC
130 TCCCGCTGCCCGACCGATCTTAGACTAGGAATGGA-CTCCGTATGCTTAGACTAGGAATAAACTC
* * * * * *
3193886 CGTATGCCTAAGTTAACCCACGAAACGAGCATACGTGCTCTGAGCTGGCCGGAGAGGCATAATGC
194 CGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTAAGCCGACCGGAG-GGCATAATGC
* * * **** * * * *
3193951 ATAAGT-TGTGGATCGGCATGGT-TCCCCTCTGCGTGCTGTTGATCCCGCTGCCATAACCCTCGG
258 ACAAGTCAG-GGATCGACCCAATCT-CCCTCTACGTGCTGTCGATCCCGCTACCACAA-CCTCGG
* *
3194014 TCTGGCTGGGG
320 TCCGACTGGGG
*
3194025 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
*
3194090 CGACCAGAGAGGTAGAATGCGCAAGCTGGGGAT
66 CGACC-GAGAGGTAGAATGCGCAAGCTAGGGAT
3194123 TGGCCTGGTC
Statistics
Matches: 347, Mismatches: 77, Indels: 12
0.80 0.18 0.03
Matches are distributed among these distances:
330 2 0.01
331 195 0.56
332 50 0.14
333 99 0.29
334 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (330 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
CGACCGAGAGGTAGAATGCGCAAGCTAGGGATCAACCCGATCCCCATCTACGTGCTACTGTCGAT
CCCGCTGCCCGACCGATCTTAGACTAGGAATGGACTCCGTATGCTTAGACTAGGAATAAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTAAGCCGACCGGAGGGCATAATGCACA
AGTCAGGGATCGACCCAATCTCCCTCTACGTGCTGTCGATCCCGCTACCACAACCTCGGTCCGAC
TGGGG
Found at i:3194217 original size:26 final size:26
Alignment explanation
Indices: 3194181--3194233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3194171 CCGATCCAAT
*
3194181 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
3194207 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3194233 C
1 C
3194234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3195257 original size:90 final size:90
Alignment explanation
Indices: 3195132--3195378 Score: 237
Period size: 90 Copynumber: 2.7 Consensus size: 90
3195122 TGATGGCACA
* * * * * *
3195132 TGCATCGACCATCATTGGCACAGGCT-ACCCTTTGGTATGGGCACTTGCCTCGACCACCATCGGC
1 TGCATCGAACACCATCGACACATGCTGACCC-TTGGTACGGGCACTTGCCTCGACCACCATCGGC
* * *
3195196 ACAAGCTGGGCCC-GAGTGCAGACGGT
65 ACAAGATAGCCCCTG-GTGCAGACGGT
* * * * * ** * *
3195222 TGCCTTGATCACCATCGACATATGCTGACCCTTGGTGCGGGCGTTTGCCTCGACCATCATCGACA
1 TGCATCGAACACCATCGACACATGCTGACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCA
*
3195287 CAAGATAGCCCCTGGTGCAGGCGGT
66 CAAGATAGCCCCTGGTGCAGACGGT
** * * **
3195312 TGCATCGAACACCATCGACACATGCTGGGCCGTGGTACAGGCTGTTGCCTCGACCACCATCGGCA
1 TGCATCGAACACCATCGACACATGCTGACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCA
3195377 CA
66 CA
3195379 TGCCGAGCCC
Statistics
Matches: 124, Mismatches: 31, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
90 119 0.96
91 5 0.04
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (90 bp):
TGCATCGAACACCATCGACACATGCTGACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCA
CAAGATAGCCCCTGGTGCAGACGGT
Found at i:3195379 original size:45 final size:45
Alignment explanation
Indices: 3195176--3195381 Score: 198
Period size: 45 Copynumber: 4.6 Consensus size: 45
3195166 GTATGGGCAC
* * * *
3195176 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCG-AGTGCAGACGG
1 TTGCCTCGACCACCATCGACACATGCT-GGCCCGTGGTGCAGGCGG
* * * * * * *
3195221 TTGCCTTGATCACCATCGACATATGCTGACCCTTGGTGCGGGCGT
1 TTGCCTCGACCACCATCGACACATGCTGGCCCGTGGTGCAGGCGG
* * * * *
3195266 TTGCCTCGACCATCATCGACACAAGATAGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGCCCGTGGTGCAGGCGG
* * * * *
3195311 TTGCATCGAACACCATCGACACATGCTGGGCCGTGGTACAGGCTG
1 TTGCCTCGACCACCATCGACACATGCTGGCCCGTGGTGCAGGCGG
*
3195356 TTGCCTCGACCACCATCGGCACATGC
1 TTGCCTCGACCACCATCGACACATGC
3195382 CGAGCCCCCG
Statistics
Matches: 125, Mismatches: 35, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
44 4 0.03
45 121 0.97
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACATGCTGGCCCGTGGTGCAGGCGG
Found at i:3195867 original size:25 final size:26
Alignment explanation
Indices: 3195833--3195884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3195823 CCGGTCTGAT
3195833 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3195858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3195884 C
1 C
3195885 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3196070 original size:26 final size:26
Alignment explanation
Indices: 3196022--3196081 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
3196012 CCTTGATCCG
3196022 ATCCG-ATG-TTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
3196046 ATCTGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
3196072 CTCCGTATGC
1 ATCCGTATGC
3196082 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:3197167 original size:45 final size:45
Alignment explanation
Indices: 3197024--3197170 Score: 123
Period size: 45 Copynumber: 3.3 Consensus size: 45
3197014 GTACGGGCAC
* * * * * * * * * *
3197024 TTGCCTCGATCGCCATCGACACAAGCTGGGCCCTAGTACAAACGG
1 TTGCCTCGACCACCATTGACACAAGATGGCCCCTGGTGCGAGCGA
* * * * *
3197069 TTGCCTTGATCACCATTGACACATGCTGGCCCTTGGTGCGAGCGA
1 TTGCCTCGACCACCATTGACACAAGATGGCCCCTGGTGCGAGCGA
* * *
3197114 TTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATTGACACAAGATGGCCCCTGGTGCGAGCGA
*
3197159 TTGTCTCGACCA
1 TTGCCTCGACCA
3197171 TCATCGGTAC
Statistics
Matches: 82, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATTGACACAAGATGGCCCCTGGTGCGAGCGA
Found at i:3198488 original size:26 final size:26
Alignment explanation
Indices: 3198452--3198504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3198442 CTGGTCTGTT
3198452 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
3198478 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
3198504 C
1 C
3198505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:3199434 original size:45 final size:45
Alignment explanation
Indices: 3199385--3199504 Score: 177
Period size: 45 Copynumber: 2.7 Consensus size: 45
3199375 GCATGGTGAT
* * ** *
3199385 GGCACATGCATCGACCATCATCGGCACAAGCTACCCTTTGGAGTG
1 GGCACTTGCCTCGACCGCCATCGGCACAAGCTACCCTTTGGAGCG
*
3199430 GGCACTTGCCTCGACCGCCATCGGCACAAGCTGCCCTTTGGAGCG
1 GGCACTTGCCTCGACCGCCATCGGCACAAGCTACCCTTTGGAGCG
*
3199475 GGCACTTGCCTCGACCGCCATCGACACAAG
1 GGCACTTGCCTCGACCGCCATCGGCACAAG
3199505 ATGGCCCCTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.17
Consensus pattern (45 bp):
GGCACTTGCCTCGACCGCCATCGGCACAAGCTACCCTTTGGAGCG
Found at i:3200802 original size:26 final size:26
Alignment explanation
Indices: 3200773--3200825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3200763 CCGATCTGAT
*
3200773 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3200799 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3200825 C
1 C
3200826 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3200910 original size:196 final size:196
Alignment explanation
Indices: 3200378--3200980 Score: 681
Period size: 196 Copynumber: 3.1 Consensus size: 196
3200368 GATCCGGTCC
* ** * * *
3200378 GATCTTAGATTGGGAATGAACTTTGTATGCTTACACTAGGGATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
3200443 CCCACGAAATGAGCGTGCGGGTGCTCAATCGACCAGAGAGGCAGCATGCATAAGCCGGGGATCGA
66 CCCACGAAATGAGCGTGCGGGTGCTCAACCGACCAGAGAGGCAGGATGCGTAAGCCGAGGATCGA
** * * * * * * *
3200508 CCCTG-TCCCCTCTAAGTGCTACCGATCTCGCTATGGGTCCCGCTATCGCAACCCTCGATCTGGT
131 CCC-GATCCCCTCTGCGTGCTGCCGATCTCGCTATGGGTCCTGCTAACGCAACCCTTGGTCCGAT
3200572 CT
195 CT
* * * * *
3200574 GGTCTTAGGCTTGGAATGAACTCCGTATGCTTAGACTGGGGATAAACCCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
3200639 CCCATGAAACGAGCATGCAGGTGCTCAACCGACCAGAGAGGTAGGATGAGTAAGCCAAGGATCGA
66 CCCACGAAATGAGCGTGCGGGTGCTCAACCGACCAGAGAGGCAGGATGCGTAAGCCGAGGATCGA
** * *
3200704 CCTTATCCCCTCTGCGTGCTGTCGATCTCGCTATGGGTCCTGCTAACGCCACCCTTGGTCCGATC
131 CCCGATCCCCTCTGCGTGCTGCCGATCTCGCTATGGGTCCTGCTAACGCAACCCTTGGTCCGATC
3200769 T
196 T
*
3200770 GATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * * ** *
3200835 TCCACGAAATGAGTGTGTGGGAGCTCAGCC-AGCCAAAGAGGCAGGATGCGTAAGATGAGGATTG
66 CCCACGAAATGAGCGTGCGGGTGCTCAACCGA-CCAGAGAGGCAGGATGCGTAAGCCGAGGATCG
* * ** ** * *
3200899 ACCCGATCCCCTTTGCGTGCTGCCGATCCCATTACAGGTCCTGCTACCACAACCCTTGGTCC-AG
130 ACCCGATCCCCTCTGCGTGCTGCCGATCTCGCTATGGGTCCTGCTAACGCAACCCTTGGTCCGA-
3200963 TCT
194 TCT
3200966 GATCTTAGACTGGGA
1 GATCTTAGACTGGGA
3200981 GCGCACTACG
Statistics
Matches: 335, Mismatches: 69, Indels: 6
0.82 0.17 0.01
Matches are distributed among these distances:
195 2 0.01
196 333 0.99
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGGTGCTCAACCGACCAGAGAGGCAGGATGCGTAAGCCGAGGATCGA
CCCGATCCCCTCTGCGTGCTGCCGATCTCGCTATGGGTCCTGCTAACGCAACCCTTGGTCCGATC
T
Found at i:3201809 original size:45 final size:45
Alignment explanation
Indices: 3201770--3201979 Score: 172
Period size: 45 Copynumber: 4.7 Consensus size: 45
3201760 CGGGCACTTA
3201770 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
* * * * * * * *
3201815 CCTCGATCACAATTGGCACATGCCGGTCCTTGGTACAGGCGATTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
** * * *
3201860 CCTCGGCCACCATCGGCACAAGAT-GGCCCTTGGTGCCGGCGGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGATTG
* * * * * **
3201905 CATCGAACACCATCGGCACATGCTGAGCCATGGTGCAAG-GAGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA-TTG
* * * *
3201950 CCTCCATCACCATCGACACATGCTGAGCCC
1 CCTCGATCACCATCGGCACAAGCTGGGCCC
3201980 CGATCGACCC
Statistics
Matches: 127, Mismatches: 35, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
44 4 0.03
45 120 0.94
46 3 0.02
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (45 bp):
CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
Found at i:3201961 original size:90 final size:90
Alignment explanation
Indices: 3201770--3201969 Score: 217
Period size: 90 Copynumber: 2.2 Consensus size: 90
3201760 CGGGCACTTA
* * * * *
3201770 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTGCCTCGATCACAATTGGCACA
1 CCTCGATCACCATCGGCACAAGATGGGCCCTGGTGCCGGCGATTGCATCGAACACAATCGGCACA
* *
3201835 TGCCGGTCCTTGGTACAGGCGATTG
66 TGCCGGTCCATGGTACAGGAGATTG
** * *
3201860 CCTCGGCCACCATCGGCACAAGAT-GGCCCTTGGTGCCGGCGGTTGCATCGAACACCATCGGCAC
1 CCTCGATCACCATCGGCACAAGATGGGCCC-TGGTGCCGGCGATTGCATCGAACACAATCGGCAC
* *
3201924 ATGCTGAG-CCATGGTGCAAGGAG-TTG
65 ATGCCG-GTCCATGGTAC-AGGAGATTG
* *
3201950 CCTCCATCACCATCGACACA
1 CCTCGATCACCATCGGCACA
3201970 TGCTGAGCCC
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
89 5 0.06
90 80 0.89
91 5 0.06
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (90 bp):
CCTCGATCACCATCGGCACAAGATGGGCCCTGGTGCCGGCGATTGCATCGAACACAATCGGCACA
TGCCGGTCCATGGTACAGGAGATTG
Found at i:3202448 original size:26 final size:26
Alignment explanation
Indices: 3202412--3202464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3202402 CCAGTCCGAT
* *
3202412 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3202438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3202464 C
1 C
3202465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3202753 original size:21 final size:21
Alignment explanation
Indices: 3202727--3202773 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
3202717 CTGTCGATCC
3202727 TGCTGCTGGTCCTACTACCGG
1 TGCTGCTGGTCCTACTACCGG
*
3202748 TGCTGCTGGTCCTGCTACCGG
1 TGCTGCTGGTCCTACTACCGG
3202769 TGCTG
1 TGCTG
3202774 TTGCCGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.06, C:0.32, G:0.32, T:0.30
Consensus pattern (21 bp):
TGCTGCTGGTCCTACTACCGG
Found at i:3202852 original size:26 final size:26
Alignment explanation
Indices: 3202801--3202853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3202791 CTGATCCTAT
* *
3202801 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3202827 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
3202853 C
1 C
3202854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3203894 original size:90 final size:90
Alignment explanation
Indices: 3203794--3203996 Score: 237
Period size: 90 Copynumber: 2.3 Consensus size: 90
3203784 GTACAGGCAC
* * * * ** * * * *
3203794 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACCATCGAT
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATACGGGCGGTTGCATCGAACACCATCGAC
* *
3203859 ACATGGC-GGCCCTTGGTGCTGGCGA
66 ACAT-GCTGGCCCATGGTGCGGGCGA
*
3203884 TTGCCTCGACCACCATCGGCATAAGATGGCCCCTGATACGGGCGGTTGCATCGAACACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATACGGGCGGTTGCATCGAACACCATCGAC
** *
3203949 ACATGCTGGGTCATGGTGCGGGCGG
66 ACATGCTGGCCCATGGTGCGGGCGA
*
3203974 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
3203997 TGTCAAGCCC
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 2 0.02
90 92 0.98
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATACGGGCGGTTGCATCGAACACCATCGAC
ACATGCTGGCCCATGGTGCGGGCGA
Found at i:3203997 original size:45 final size:45
Alignment explanation
Indices: 3203794--3203998 Score: 196
Period size: 45 Copynumber: 4.6 Consensus size: 45
3203784 GTACAGGCAC
* * * * * *
3203794 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGACACATGCTGGCCCCTGGTGCGGGCGG
* * * * *
3203839 TTGCCTCGATCACCATCGATACATGGC-GGCCCTTGGTGCTGGCGA
1 TTGCCTCGACCACCATCGACACAT-GCTGGCCCCTGGTGCGGGCGG
* * * * * *
3203884 TTGCCTCGACCACCATCGGCATAAGATGGCCCCTGATACGGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGCCCCTGGTGCGGGCGG
* * ** *
3203929 TTGCATCGAACACCATCGACACATGCTGGGTCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGCCCCTGGTGCGGGCGG
3203974 TTGCCTCGACCACCATCGACACATG
1 TTGCCTCGACCACCATCGACACATG
3203999 TCAAGCCCCG
Statistics
Matches: 123, Mismatches: 35, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
44 1 0.01
45 120 0.98
46 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACATGCTGGCCCCTGGTGCGGGCGG
Found at i:3213980 original size:26 final size:26
Alignment explanation
Indices: 3213944--3213996 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3213934 CTGGTCCGAT
3213944 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3213970 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3213996 C
1 C
3213997 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3215003 original size:45 final size:45
Alignment explanation
Indices: 3214944--3215081 Score: 159
Period size: 45 Copynumber: 3.1 Consensus size: 45
3214934 CGCCATCGGT
* *
3214944 ACAAGCTGGGCCCTGGTGTGGGTGGTTGCTTTGACCACCATCGGC
1 ACAAGCTGGGCCCTGGTGTGGGTGGTTGCATTGACCACCATCGAC
* * * *
3214989 ACAAGATGGCCCCTGGTGCGGGTGGTTGCATTGAACACCATCGAC
1 ACAAGCTGGGCCCTGGTGTGGGTGGTTGCATTGACCACCATCGAC
* ** * * * *
3215034 ACATGCTGGGCTGTGGTGTGGGCGGTTGCCTCGACCACGATCGAC
1 ACAAGCTGGGCCCTGGTGTGGGTGGTTGCATTGACCACCATCGAC
3215079 ACA
1 ACA
3215082 TGCTAAGCCT
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.17, C:0.27, G:0.34, T:0.22
Consensus pattern (45 bp):
ACAAGCTGGGCCCTGGTGTGGGTGGTTGCATTGACCACCATCGAC
Found at i:3215567 original size:26 final size:26
Alignment explanation
Indices: 3215531--3215583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3215521 TCAGTCCGAT
*
3215531 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3215557 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3215583 C
1 C
3215584 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3215915 original size:26 final size:26
Alignment explanation
Indices: 3215886--3215938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3215876 CTGATCCAAA
3215886 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3215912 CTTATACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3215938 C
1 C
3215939 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3216973 original size:45 final size:45
Alignment explanation
Indices: 3216868--3217031 Score: 123
Period size: 45 Copynumber: 3.6 Consensus size: 45
3216858 GGCTACCCTT
* * * * * *
3216868 TGGTACGGGCACTTGCCTCGATCGCCATCGGCACAAGTTGGGCCC
1 TGGTGCGGGCAGTTGCCTCGAACACCATCGACACAAGATGGGCCC
* *
3216913 TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGAT-GGCCC
1 TGGTGCGGGCAGTTGCCTCGAACACCATCGACACAAGATGGGCCC
* * * * * * * ** *
3216957 TTTGTGCTGGCAGTTGCATCGAACACCATTGGCACATGCTGGAACG
1 -TGGTGCGGGCAGTTGCCTCGAACACCATCGACACAAGATGGGCCC
* * *
3217003 TGGTGGGGGCGGTTGCCTCGACCACCATC
1 TGGTGCGGGCAGTTGCCTCGAACACCATC
3217032 TGTACATGCC
Statistics
Matches: 91, Mismatches: 26, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
44 5 0.05
45 84 0.92
46 2 0.02
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (45 bp):
TGGTGCGGGCAGTTGCCTCGAACACCATCGACACAAGATGGGCCC
Found at i:3217521 original size:26 final size:26
Alignment explanation
Indices: 3217492--3217544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3217482 CCAGTCTGAT
*
3217492 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3217518 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3217544 C
1 C
3217545 CTAATTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3224897 original size:45 final size:45
Alignment explanation
Indices: 3224764--3224890 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
3224754 TTGGCACAAA
* * *
3224764 CTGGGCCCTGGTACGAGCGGTTGCCTCGACCACCATCAGCACAAG
1 CTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATCACCACATG
* * * * * *
3224809 ATGGCCCCTGGTGCGGACGGTTGCATCGAACACCATCACCACATG
1 CTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATCACCACATG
* *
3224854 CTGGGCCGTGGTACGGGCGGTTGCCTCGACCATCATC
1 CTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATC
3224891 GACACATACC
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (45 bp):
CTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATCACCACATG
Found at i:3225373 original size:26 final size:26
Alignment explanation
Indices: 3225337--3225389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3225327 CCGGTCTGAT
*
3225337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3225363 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3225389 C
1 C
3225390 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3226743 original size:45 final size:44
Alignment explanation
Indices: 3226685--3226839 Score: 148
Period size: 45 Copynumber: 3.5 Consensus size: 44
3226675 CGAGCACTTA
* * * *
3226685 CCTCAACCGCCATCGGCACAAGCTGGGCCCTGGTATGGGTGGTTG
1 CCTCGACCACCATCGGCACAAG-TGGACCCTGGTATGGGCGGTTG
* * * * *
3226730 CCTCGATCACCATCGGTACATGTCGACCCTTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGTGGACCC-TGGTATGGGCGGTTG
* * ** *
3226775 CCTTGACCACCATCGGCATAAGATGGACCCTGGTACAGGCAGTTG
1 CCTCGACCACCATCGGCACAAG-TGGACCCTGGTATGGGCGGTTG
*
3226820 CATCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
3226840 TGGCGAGCCT
Statistics
Matches: 86, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
44 5 0.06
45 75 0.87
46 6 0.07
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (44 bp):
CCTCGACCACCATCGGCACAAGTGGACCCTGGTATGGGCGGTTG
Found at i:3227330 original size:26 final size:26
Alignment explanation
Indices: 3227294--3227346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3227284 CCGGTTCGAT
*
3227294 CTTAGATTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
3227320 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
3227346 C
1 C
3227347 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:3228682 original size:45 final size:45
Alignment explanation
Indices: 3228633--3228835 Score: 158
Period size: 45 Copynumber: 4.5 Consensus size: 45
3228623 GTACGGGCAC
*
3228633 TTGCTTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCGA
1 TTGCTTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGA
* * * ** * *
3228678 TTGCTTCGATCACCATTGGCACATGC-CAGCCCTTGGTGTAGGTGA
1 TTGCTTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGTGGGCGA
* * * * * *
3228723 TTGCCTT-GACCACCATCGGCACAAGGTGGCCCCTAGTATGGGTGG
1 TTG-CTTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGA
* * * * * * *
3228768 TTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGG
1 TTGCTTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGA
* * *
3228813 TTGCCTCGACCATCATCAGCACA
1 TTGCTTCGACCACCATCGGCACA
3228836 TGTCAAGCCT
Statistics
Matches: 120, Mismatches: 34, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
44 6 0.05
45 108 0.90
46 6 0.05
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (45 bp):
TTGCTTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGA
Found at i:3228817 original size:90 final size:90
Alignment explanation
Indices: 3228633--3228835 Score: 210
Period size: 90 Copynumber: 2.3 Consensus size: 90
3228623 GTACGGGCAC
* * * * * * * *
3228633 TTGCTTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCGATTGCTTCGATCACCATTGGC
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTATGGGCGATTGCATCGAACACCATCGGC
*
3228698 ACATGCCAGCCCTTGGTGTAGGTGA
66 ACATGCCAGCCCTTGGTGTAGGCGA
* * * *
3228723 TTGCCTTGACCACCATCGGCACAAGGTGGCCCCTAGTATGGGTGGTTGCATCGAACACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTATGGGCGATTGCATCGAACACCATCGGC
** * * *
3228788 ACATGCTGGGCCTTGGTG-CGGACGG
66 ACATGCCAGCCCTTGGTGTAGG-CGA
* *
3228813 TTGCCTCGACCATCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
3228836 TGTCAAGCCT
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 2 0.02
90 89 0.98
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTATGGGCGATTGCATCGAACACCATCGGC
ACATGCCAGCCCTTGGTGTAGGCGA
Found at i:3229807 original size:558 final size:557
Alignment explanation
Indices: 3228754--3229867 Score: 2102
Period size: 558 Copynumber: 2.0 Consensus size: 557
3228744 CAAGGTGGCC
3228754 CCTAGTATGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGGTTGCCT
1 CCTAGTATGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGGTTGCCT
*
3228819 CGACCATCATCAGCACATGTCAAGCCTGGGTCGACCCTTGAAATGAGCGTGCAGGCACCGAACCG
66 CGACCATCATCAGCACATGTCAAGCCTAGGTCGACCCTTGAAATGAGCGTGCAGGCACCGAACCG
* *
3228884 ACTGATGGGGGTGGGATGCTCGAGCCGACCAAGGATCCCGCTGCTGGTCCCCTCGGTTATTGCCC
131 ACCGATGGGGGTGGGATGCTCGAGCCGACCAAGGATCCCGCTACTGGTCCCCTCGGTTATTGCCC
3228949 CAAATGCCGTCGATAGCCTCTGGCCCTTGGTTGGTCGAGACCGAGAATGCACTAGTATGCCTAAG
196 CAAATGCCGTCGATAGCCTCTGGCCCTTGGTTGGTCGAGACCGAGAATGCACTAGTATGCCTAAG
*
3229014 TCAACCCATGAAACAAGCGTACGGTCCCTCTCTATGTGCTATCGATCCCACTGTGGGTCCCTCGA
261 TCAACCCATGAAACAAGCGTACGGTCCCTCTCTATGTGCTATCGATCCCACTGTGGGTCCCTCAA
*
3229079 TCCAGTTGGGGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAT
326 TCCAGTTAGGGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAT
*
3229144 GGGCGCTCAGCCGATCAGAGAGGCAGGATTCATAAGCTGAGGATCGACCCGGTCCCCCTCTGCGC
391 GGGCACTCAGCCGATCAGAGAGGCAGGATTCATAAGCTGAGGATCGACCCGGTCCCCCTCTGCGC
3229209 ATTGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTGG
456 ATTGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTGG
*
3229274 TATGTCTAAGTCAACCCACGGAACAAGCGTACGGGCA
521 TATGTCTAAGTCAACCCACGAAACAAGCGTACGGGCA
3229311 CCTAGTATGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGGTTGCCT
1 CCTAGTATGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGGTTGCCT
*
3229376 CGACCATCATTAGCACATGTCAAGCCTAGGTCGACCCTTGAAATGAGCGTGCAGGCACCGAACCG
66 CGACCATCATCAGCACATGTCAAGCCTAGGTCGACCCTTGAAATGAGCGTGCAGGCACCGAACCG
3229441 ACCGATGGGGGTGGGATGCTCGAGCCGACCAAGGATCCCGCTACTGGTCCCCCTCGGTTATTGCC
131 ACCGATGGGGGTGGGATGCTCGAGCCGACCAAGGATCCCGCTACTGGT-CCCCTCGGTTATTGCC
3229506 CCAAATGCCGTCGATAGCCTCTGGCCCTTGGTTGGTCGAGACCGAGAATGCACTAGTATGCCTAA
195 CCAAATGCCGTCGATAGCCTCTGGCCCTTGGTTGGTCGAGACCGAGAATGCACTAGTATGCCTAA
*
3229571 GTCAACCCATGAAACAAGCGTGCGGTCCCTCTCTATGTGCTATCGATCCCACTGTGGGTCCCTCA
260 GTCAACCCATGAAACAAGCGTACGGTCCCTCTCTATGTGCTATCGATCCCACTGTGGGTCCCTCA
* *
3229636 ATCCAGTTAGGGCTTAGATTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
325 ATCCAGTTAGGGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTA
* *
3229701 TGGGCACTCAGCTGATCAGAGAGGCAGGATTCATAAGCTGAGGATCGACCTGGTCCCCCTCTGCG
390 TGGGCACTCAGCCGATCAGAGAGGCAGGATTCATAAGCTGAGGATCGACCCGGTCCCCCTCTGCG
3229766 CATTGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTG
455 CATTGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTG
3229831 GTATGTCTAAGTCAACCCACGAAACAAGCGTACGGGC
520 GTATGTCTAAGTCAACCCACGAAACAAGCGTACGGGC
3229868 GCTGAGCCGG
Statistics
Matches: 543, Mismatches: 13, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
557 174 0.32
558 369 0.68
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (557 bp):
CCTAGTATGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGACGGTTGCCT
CGACCATCATCAGCACATGTCAAGCCTAGGTCGACCCTTGAAATGAGCGTGCAGGCACCGAACCG
ACCGATGGGGGTGGGATGCTCGAGCCGACCAAGGATCCCGCTACTGGTCCCCTCGGTTATTGCCC
CAAATGCCGTCGATAGCCTCTGGCCCTTGGTTGGTCGAGACCGAGAATGCACTAGTATGCCTAAG
TCAACCCATGAAACAAGCGTACGGTCCCTCTCTATGTGCTATCGATCCCACTGTGGGTCCCTCAA
TCCAGTTAGGGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAT
GGGCACTCAGCCGATCAGAGAGGCAGGATTCATAAGCTGAGGATCGACCCGGTCCCCCTCTGCGC
ATTGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTGG
TATGTCTAAGTCAACCCACGAAACAAGCGTACGGGCA
Found at i:3230167 original size:26 final size:26
Alignment explanation
Indices: 3230138--3230190 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3230128 CTAGTCCGAT
3230138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3230164 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3230190 C
1 C
3230191 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3230340 original size:196 final size:194
Alignment explanation
Indices: 3229968--3230345 Score: 449
Period size: 196 Copynumber: 1.9 Consensus size: 194
3229958 TCCGAATGGG
*
3229968 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * *
3230033 CCGACCGGAGAGGCGAATACGTAAGTCGGGGATCGACCCGATCATCCCTGCGTGCTGTCGATCCT
66 CCGACCAGAGAGGCGAATACGTAAGTCGAGGATCGACCCGATCA-CCCTGCGTGCTGTCGATCCC
* * * * * * * *
3230098 GCTGCTGGTCCTATTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 ACTGATGGTCCTACTACCGCAACCCTCAGTCGAGTCCGAACTTAGACTGGGAATGAACTCCGTAT
* ** * * * **
3230163 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * *
3230227 GCCGGCCAGAGAGGCAGGATGCGTAAGTCGAGGATCGACCCGATC-CCTTCTGTGTGCTGTCGAT
65 GCCGACCAGAGAGGC-GAATACGTAAGTCGAGGATCGACCCGATCACC--CTGCGTGCTGTCGAT
3230291 CCCACT-ATGGGTCCTACTACCGCAACCCTCAGTCCGA-TCCGAACTTAGACTGGGA
127 CCCACTGAT-GGTCCTACTACCGCAACCCTCAGT-CGAGTCCGAACTTAGACTGGGA
3230346 GCGCACTACG
Statistics
Matches: 153, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
194 3 0.02
195 67 0.44
196 81 0.53
197 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
CCGACCAGAGAGGCGAATACGTAAGTCGAGGATCGACCCGATCACCCTGCGTGCTGTCGATCCCA
CTGATGGTCCTACTACCGCAACCCTCAGTCGAGTCCGAACTTAGACTGGGAATGAACTCCGTAT
Found at i:3231704 original size:26 final size:26
Alignment explanation
Indices: 3231666--3231718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3231656 CCGGTCTAAT
*
3231666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
3231692 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3231718 C
1 C
3231719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3233069 original size:45 final size:44
Alignment explanation
Indices: 3233020--3233173 Score: 166
Period size: 45 Copynumber: 3.4 Consensus size: 44
3233010 GGGCACTTGC
* **
3233020 CTCGACCGCCATCGGCACAAGCAGGGCCCTGATGCAAGCGGTTG
1 CTCGACCACCATCGGCACAAGCAGGGCCCTGATGCGGGCGGTTG
* * *
3233064 TCTCGACCACCATCGGCACAAG-ATGGCCCCTGGTACGGGCGGTTG
1 -CTCGACCACCATCGGCACAAGCA-GGGCCCTGATGCGGGCGGTTG
* * * * *
3233109 CATCGAACACCATCGGCACATGCTGGGCCTTGCTGCGGGCGGTTG
1 C-TCGACCACCATCGGCACAAGCAGGGCCCTGATGCGGGCGGTTG
3233154 CCTCGACCACCATCGGCACA
1 -CTCGACCACCATCGGCACA
3233174 GGCCGAGCCT
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
44 2 0.02
45 88 0.97
46 1 0.01
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (44 bp):
CTCGACCACCATCGGCACAAGCAGGGCCCTGATGCGGGCGGTTG
Found at i:3233098 original size:90 final size:90
Alignment explanation
Indices: 3233004--3233173 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 90
3232994 GGCTGCCCTT
* * * * *
3233004 TGGTATGGGCACTTGCCTCGACCGCCATCGGCACAAGCAGGGCCCTGATGCAAGCGGTTGTCTCG
1 TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCAGGGCCCTGATGCAAGCGGTTGCCTCG
3233069 ACCACCATCGGCACAAGATGGCCCC
66 ACCACCATCGGCACAAGATGGCCCC
** * * * * **
3233094 TGGTACGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGCTGCGGGCGGTTGCCTCG
1 TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCAGGGCCCTGATGCAAGCGGTTGCCTCG
3233159 ACCACCATCGGCACA
66 ACCACCATCGGCACA
3233174 GGCCGAGCCT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.18
Consensus pattern (90 bp):
TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCAGGGCCCTGATGCAAGCGGTTGCCTCG
ACCACCATCGGCACAAGATGGCCCC
Found at i:3234176 original size:196 final size:195
Alignment explanation
Indices: 3233822--3234183 Score: 433
Period size: 195 Copynumber: 1.9 Consensus size: 195
3233812 ACATGGAATA
*
3233822 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTAGCCAAAAAGGAAA
1 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTAGCCAAAAAGGAAA
* * * *
3233887 AATGCGCAAGCCAGGATCGACCCGGTCCCCCTTACATGCTGTCGATCCTGCTGTTGGTCCTACTA
66 AATGCACAAGCCAGGATCGACCCGGTCCCCCTTACATGCTATCGATCCTGCTATGGGTCCTACTA
* * *
3233952 TCATAACCCTTGGTCCGATTCGATCTTAGGCTGGGAATGAACTCCGTATGCATAGACTGGGGATG
131 CCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACTGGGGATG
* ** * * * *
3234017 AACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAG-TCAGCCAGAGAGGCA
1 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCT-AGCCAAAAAGGAA
** * * * *
3234081 GGATGCACAATCCAGGGATCGACCTGGT-CCCCTCTGCATGCTATCGAT-CTCGCTATGGGTCTT
65 AAATGCACAAGCCA-GGATCGACCCGGTCCCCCT-TACATGCTATCGATCCT-GCTATGGGTCCT
* * * * *
3234144 GCTACCGTAACCCTTGGTCTGGTCCTATCTTAGACTGGGA
127 ACTACCATAACCCTTGGTCCGATCCGATCTTAGACTGGGA
3234184 CCGCACTACG
Statistics
Matches: 137, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
194 1 0.01
195 71 0.52
196 65 0.47
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (195 bp):
AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTAGCCAAAAAGGAAA
AATGCACAAGCCAGGATCGACCCGGTCCCCCTTACATGCTATCGATCCTGCTATGGGTCCTACTA
CCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACTGGGGATG
Found at i:3234198 original size:196 final size:195
Alignment explanation
Indices: 3233822--3234198 Score: 427
Period size: 196 Copynumber: 1.9 Consensus size: 195
3233812 ACATGGAATA
*
3233822 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTAGCCAAAAAGGAAA
1 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTAGCCAAAAAGGAAA
* * * *
3233887 AATGCGCAAGCCAGGATCGACCCGGTCCCCCTTACATGCTGTCGATCCTGCTGTTGGTCCTACTA
66 AATGCACAAGCCAGGATCGACCCGGTCCCCCTTACATGCTATCGATCCTGCTATGGGTCCTACTA
* * * * *
3233952 TCATAACCCTTGGTCCGATTCGATCTTAGGCTGGGAATGAACTCCGTATGCATAGACTGGGGATG
131 CCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAACGAACTACGTATGCATAGACTGGGGATG
* ** * * * *
3234017 AACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAG-TCAGCCAGAGAGGCA
1 AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCT-AGCCAAAAAGGAA
** * * * *
3234081 GGATGCACAATCCAGGGATCGACCTGGT-CCCCTCTGCATGCTATCGAT-CTCGCTATGGGTCTT
65 AAATGCACAAGCCA-GGATCGACCCGGTCCCCCT-TACATGCTATCGATCCT-GCTATGGGTCCT
* * * * * * *
3234144 GCTACCGTAACCCTTGGTCTGGTCCTATCTTAGACTGGGACCGCACTACGTATGC
127 ACTACCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAACGAACTACGTATGC
3234199 CTAAGTCAAC
Statistics
Matches: 148, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
194 1 0.01
195 71 0.48
196 76 0.51
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (195 bp):
AACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTAGCCAAAAAGGAAA
AATGCACAAGCCAGGATCGACCCGGTCCCCCTTACATGCTATCGATCCTGCTATGGGTCCTACTA
CCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAACGAACTACGTATGCATAGACTGGGGATG
Found at i:3234994 original size:45 final size:45
Alignment explanation
Indices: 3234945--3235056 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 45
3234935 TATGGGCACT
* *
3234945 TGCCTCGACCACCATTGACACAAGCA-GGGCCCTGGTACGAGCGGC
1 TGCCTCGACCACCATTGACACAAG-ATGGCCCCTGGTACGAGCGAC
* *
3234990 TGCCTCGACCACCA-TCAGCACAAGATGGCCCCTGGTACGAGCGAT
1 TGCCTCGACCACCATTGA-CACAAGATGGCCCCTGGTACGAGCGAC
* * *
3235035 TGCATCGAACACCATTGGCACA
1 TGCCTCGACCACCATTGACACA
3235057 TACTGGGTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
44 3 0.05
45 52 0.93
46 1 0.02
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.15
Consensus pattern (45 bp):
TGCCTCGACCACCATTGACACAAGATGGCCCCTGGTACGAGCGAC
Found at i:3235592 original size:26 final size:26
Alignment explanation
Indices: 3235556--3235608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3235546 TTGGCCCGAT
3235556 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3235582 CTTAGGCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
3235608 C
1 C
3235609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3236759 original size:45 final size:44
Alignment explanation
Indices: 3236710--3236849 Score: 172
Period size: 45 Copynumber: 3.1 Consensus size: 44
3236700 CACGGCTGCT
* * * *
3236710 ATCGGCACAAGCTAAGCCCTGGTACGGGTGGTTGCCTCGATCACC
1 ATCGGCACAAGCT-GGCCCTGGTGCGGGCGGTTGCCTCGACCACC
* * *
3236755 ATCGGCACATGCTGGCCCTTGGTGCAGGCGATTGCCTCGACCACC
1 ATCGGCACAAGCTGGCCC-TGGTGCGGGCGGTTGCCTCGACCACC
* *
3236800 ATCGACACAAGATGGCCACTGGTGCGGGCGGTTGCCTCGACCACC
1 ATCGGCACAAGCTGGCC-CTGGTGCGGGCGGTTGCCTCGACCACC
3236845 ATCGG
1 ATCGG
3236850 TACATGTCGA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 4 0.05
45 75 0.94
46 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (44 bp):
ATCGGCACAAGCTGGCCCTGGTGCGGGCGGTTGCCTCGACCACC
Found at i:3237312 original size:25 final size:24
Alignment explanation
Indices: 3237276--3237327 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
3237266 CTGCTGCCGA
*
3237276 TCCGATGTTAGACT-GGAAATGAAC
1 TCCGATGCTAGACTAGG-AATGAAC
3237300 TCCGTATGCTAGACTAGGAATGAAC
1 TCCG-ATGCTAGACTAGGAATGAAC
3237325 TCC
1 TCC
3237328 ATATCCCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 4 0.16
25 19 0.76
26 2 0.08
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (24 bp):
TCCGATGCTAGACTAGGAATGAAC
Found at i:3238691 original size:90 final size:89
Alignment explanation
Indices: 3238597--3238889 Score: 367
Period size: 90 Copynumber: 3.3 Consensus size: 89
3238587 GGATGGGCAC
* * * * *
3238597 TTGCCTCGATCACCATCGGCACAAGCTAGG-CCCTGGTGTGGCCGGTTGTC-TCGATCACCATCA
1 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCCTGGTGCGGGCGGTTG-CATCGAACACCATCA
* ** * *
3238660 GCACATTGC-GGCCCTTGGTGCGGGTG
64 GTACA-TGCTGGGTCATGATGCGGGTG
* *
3238686 ATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAGTTGCATCGAACACCATCGG
1 -TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAG
*
3238751 TACATGCTGGGTCGTGATGCGGGTTG
65 TACATGCTGGGTCATGATGCGGG-TG
* * *
3238777 TAGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCTGT
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGT
3238842 ACATGCTGGGTCATGATGCGGGTGG
66 ACATGCTGGGTCATGATGCGGGT-G
3238867 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3238890 TGTCAAGCCC
Statistics
Matches: 179, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
89 7 0.04
90 170 0.95
91 2 0.01
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (89 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGT
ACATGCTGGGTCATGATGCGGGTG
Found at i:3238891 original size:45 final size:45
Alignment explanation
Indices: 3238597--3238891 Score: 243
Period size: 45 Copynumber: 6.6 Consensus size: 45
3238587 GGATGGGCAC
* * * *
3238597 TTGCCTCGATCACCATCGGCACAAGCTAGG-CCCTGGTGTGGCCGG
1 TTGCCTCGACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCGG
* * * * * *
3238642 TTGTCTCGATCACCATCAGCACATTGC-GGCCCTTGGTGCGGGTGA
1 TTGCCTCGACCACCATCGGCACA-TGCTGGCCCCTGGTGCGGGCGG
* * *
3238687 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * ** * * **
3238732 TTGCATCGAACACCATCGGTACATGCTGGGTCGTGATGCGGGTTG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * *
3238777 TAGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * * ** * * *
3238822 TTGCATCGAACACCATCTGTACATGCTGGGTCATGATGCGGGTGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
3238867 TTGCCTCGACCACCATCGGCACATG
1 TTGCCTCGACCACCATCGGCACATG
3238892 TCAAGCCCCG
Statistics
Matches: 189, Mismatches: 58, Indels: 6
0.75 0.23 0.02
Matches are distributed among these distances:
44 3 0.02
45 184 0.97
46 2 0.01
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
Found at i:3239351 original size:26 final size:26
Alignment explanation
Indices: 3239314--3239372 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
3239304 CTGCTACCGG
3239314 TTCG-ATG-TTAGACTGCGAATGAAC
1 TTCGTATGCTTAGACTGCGAATGAAC
*
3239338 -TCTGTATGCTTAGACTGGGAATGAAC
1 TTC-GTATGCTTAGACTGCGAATGAAC
3239364 TTCGTATGC
1 TTCGTATGC
3239373 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.07
24 1 0.03
25 3 0.10
26 22 0.73
27 2 0.07
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
TTCGTATGCTTAGACTGCGAATGAAC
Found at i:3239727 original size:26 final size:26
Alignment explanation
Indices: 3239676--3239728 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
3239666 CCAATCCGAT
*
3239676 CTTAGACTAGAAATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTTCATATG
3239702 CTTAGACTATG-AATGAAC-TCTATATG
1 CTTAGACTA-GAAATGAACTTC-ATATG
3239728 C
1 C
3239729 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTTCATATG
Found at i:3240639 original size:13 final size:13
Alignment explanation
Indices: 3240621--3240671 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
3240611 TAATGGCACA
3240621 TGATGGCACATGG
1 TGATGGCACATGG
*
3240634 TGATGGCATATGG
1 TGATGGCACATGG
*
3240647 TGATGGCACATGA
1 TGATGGCACATGG
*
3240660 TGATGGCCCATG
1 TGATGGCACATG
3240672 CATCGACCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3241480 original size:196 final size:195
Alignment explanation
Indices: 3241109--3241502 Score: 461
Period size: 196 Copynumber: 2.0 Consensus size: 195
3241099 TCCGATTGGG
* *
3241109 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATACGGGCGCTCAG
* * * * * * * *
3241174 TCGACCGGAGAGGCAGAATGTGTAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTAACGATCC
66 CCGACCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTAACGATCC
* ** * * * * * *
3241239 TGCTGTTGGTCCTACTGCCATAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTCGTA
131 CGCTGCAGGTCCTACTACCACAACCATCAGTCAGAT-CAATCTTAGACTGGGAATGAACTACGTA
3241304 T
195 T
* *
3241305 GCTTAGACTATGG-ATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCATACGGGCGCTCA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATACGGGCGCTCA
* * *
3241369 GCC-AGCCAGAGAGGCAGGATGTGCAAGCCAGGGATCGACCCGATCCCCTCTACATGCTACCGAT
65 GCCGA-CCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTAACGAT
* * * * *
3241433 CCCGCTGCAGGTCTTGCTACCACAACCATCAGTCCAGTAT-GATCTTAGACTGGGAGTGCACTAC
129 CCCGCTGCAGGTCCTACTACCACAACCATCAGT-CAG-ATCAATCTTAGACTGGGAATGAACTAC
3241497 GTAT
192 GTAT
3241501 GC
1 GC
3241503 CTAAGTCAAC
Statistics
Matches: 165, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
195 1 0.01
196 156 0.95
197 6 0.04
198 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATACGGGCGCTCAG
CCGACCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTAACGATCC
CGCTGCAGGTCCTACTACCACAACCATCAGTCAGATCAATCTTAGACTGGGAATGAACTACGTAT
Found at i:3242373 original size:45 final size:45
Alignment explanation
Indices: 3242289--3242376 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
3242279 CGCCATTGGC
* * * * *
3242289 ACAAGTTGGGCCCTGGTGCGGGTAGTTACCTTGACCACCATCGTT
1 ACAAGATGGCCCCTGGTGCGGGTAGTTACATCGAACACCATCGTT
* *
3242334 ACAAGATGGCCCCTGGTGCGGGTGGTTGCATCGAACACCATCG
1 ACAAGATGGCCCCTGGTGCGGGTAGTTACATCGAACACCATCG
3242377 GCACATGCTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (45 bp):
ACAAGATGGCCCCTGGTGCGGGTAGTTACATCGAACACCATCGTT
Found at i:3242934 original size:26 final size:26
Alignment explanation
Indices: 3242905--3242957 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3242895 TCGATCTGAT
3242905 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
3242931 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3242957 C
1 C
3242958 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3243934 original size:45 final size:45
Alignment explanation
Indices: 3243885--3244004 Score: 150
Period size: 45 Copynumber: 2.7 Consensus size: 45
3243875 GGCTGCCTTT
** * *
3243885 TGGTACGGGCACTTGCCTCGACCACCATCGACACAACCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGACCACCATCGACACAACATGGCCCC
* * *
3243930 TGGTACGGGCGGTTACCTCGACCACCATCGTCACAAGATGGCCCC
1 TGGTACGGGCGGTTGCCTCGACCACCATCGACACAACATGGCCCC
* * *
3243975 TGGTATGGGCGGTTGCATCGAACACCATCG
1 TGGTACGGGCGGTTGCCTCGACCACCATCG
3244005 GTGCATGCTG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (45 bp):
TGGTACGGGCGGTTGCCTCGACCACCATCGACACAACATGGCCCC
Found at i:3245546 original size:45 final size:45
Alignment explanation
Indices: 3245451--3245645 Score: 149
Period size: 45 Copynumber: 4.4 Consensus size: 45
3245441 GCCTCGACTG
* * * * * * * *
3245451 CCAT-GGCACAAGCTGGGCCCTGGTGTGGGCTGTTACCTCGATCA
1 CCATCGGCACATGCCGGCCCCTGGTGCGGGCGGTTGCCTTGACCA
* * * * *
3245495 CAATCGGCACATGCCGGCCCTTGGTGCGGGTGATGGCCTTGACCA
1 CCATCGGCACATGCCGGCCCCTGGTGCGGGCGGTTGCCTTGACCA
* ** ** * * *
3245540 CCATCGGCACAAGATGGCCCCTAATGCGGGCGGTTGCATCGAACA
1 CCATCGGCACATGCCGGCCCCTGGTGCGGGCGGTTGCCTTGACCA
* * * * *
3245585 CCATCGGCACATGCTGGGCCGTGGTGCCGACGGTTGCCTTGACCA
1 CCATCGGCACATGCCGGCCCCTGGTGCGGGCGGTTGCCTTGACCA
3245630 CCATCGGCACATGCCG
1 CCATCGGCACATGCCG
3245646 AGCACCGCTC
Statistics
Matches: 112, Mismatches: 38, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
44 3 0.03
45 109 0.97
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.19
Consensus pattern (45 bp):
CCATCGGCACATGCCGGCCCCTGGTGCGGGCGGTTGCCTTGACCA
Found at i:3246441 original size:26 final size:26
Alignment explanation
Indices: 3246412--3246464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3246402 CTGGTCTGAT
*
3246412 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3246438 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3246464 C
1 C
3246465 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3247561 original size:45 final size:45
Alignment explanation
Indices: 3247402--3247561 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
3247392 GTACCGGCAC
* * * * * * *
3247402 TTGCCTCGACCGCCATCGGCACAAGCTAGCCCTTGGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACATGATGGCCCATGGTGCTGGCGG
* * *
3247447 TTGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGCTGGCGG
1 TTGCCTCGACCACCATCGGCACATGATGGCCCATGGTGCTGGCGG
* * * * * *
3247492 TTGCATCGAACACCATCGGTACATGCTGGGCCATGG-GGTGGGCGG
1 TTGCCTCGACCACCATCGGCACATGATGGCCCATGGTGCT-GGCGG
*
3247537 TTGCCTCGACCACCATCGACACATG
1 TTGCCTCGACCACCATCGGCACATG
3247562 TCAAGCCTCG
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 2 0.02
45 92 0.98
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGATGGCCCATGGTGCTGGCGG
Found at i:3248051 original size:26 final size:26
Alignment explanation
Indices: 3248013--3248065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3248003 CCAGTTCAAT
*
3248013 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3248039 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3248065 C
1 C
3248066 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3248410 original size:26 final size:26
Alignment explanation
Indices: 3248369--3248421 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3248359 CCAGTCTGAT
*
3248369 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3248395 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
3248421 C
1 C
3248422 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3249414 original size:45 final size:45
Alignment explanation
Indices: 3249365--3249567 Score: 140
Period size: 45 Copynumber: 4.5 Consensus size: 45
3249355 GTACGGGCAC
*
3249365 TTGCCTCGACCACCATTGGCACAAGCTTGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATTGGCACAAGCTTGGCCCTGGTGCGGGCGG
* * * ** * *
3249410 TTGCCTCGATCACCATTAGCACATGC-CAGCCCTTGGTGCGAGCGA
1 TTGCCTCGACCACCATTGGCACAAGCTTGGCCC-TGGTGCGGGCGG
* * * * * * *
3249455 TTGCCTCAACCGCCATCGACACAAG-ATGGCCCCTGGTGTGGACGG
1 TTGCCTCGACCACCATTGGCACAAGCTTGG-CCCTGGTGCGGGCGG
* * * * * * * *** *
3249500 TTGCATCGAACACCATCGGTATATGCTGGGTTGTGGTGTGGGCGG
1 TTGCCTCGACCACCATTGGCACAAGCTTGGCCCTGGTGCGGGCGG
3249545 TTGCCTCGACCACCATTGGCACA
1 TTGCCTCGACCACCATTGGCACA
3249568 TTCCGAGCCC
Statistics
Matches: 114, Mismatches: 40, Indels: 8
0.70 0.25 0.05
Matches are distributed among these distances:
44 4 0.04
45 105 0.92
46 5 0.04
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (45 bp):
TTGCCTCGACCACCATTGGCACAAGCTTGGCCCTGGTGCGGGCGG
Found at i:3249903 original size:26 final size:26
Alignment explanation
Indices: 3249852--3249904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3249842 TCGATCCGAT
*
3249852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3249878 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
3249904 C
1 C
3249905 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3250078 original size:26 final size:26
Alignment explanation
Indices: 3250049--3250101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3250039 CCGGTCTGAC
*
3250049 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
3250075 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
3250101 C
1 C
3250102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:3251049 original size:45 final size:44
Alignment explanation
Indices: 3250982--3251142 Score: 148
Period size: 45 Copynumber: 3.6 Consensus size: 44
3250972 ATCGACCATT
* ** *
3250982 ATCGGCACAGGCT-GCCCTTTGGTATGGGCACTTGCCTCGACTGCC
1 ATCGGCACAAGCTGGCCC-TTGGTGCGGGCA-TTGCCTCGACTACC
* * *
3251027 ATCGGCACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTCGA-TCACC
1 ATCGGCACAAGCTGGCCCTTGGTGCGGGC-ATTGCCTCGACT-ACC
* * *
3251072 ATCGGCACATGCTGGCCCTTGGTGCGGACGATTGCCTCGACCACC
1 ATCGGCACAAGCTGGCCCTTGGTGCGGGC-ATTGCCTCGACTACC
*
3251117 ATCGGCACAAGATGG-CCTCTGGTGCG
1 ATCGGCACAAGCTGGCCCT-TGGTGCG
3251143 AGCGGTTGCA
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
44 4 0.04
45 89 0.93
46 3 0.03
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.21
Consensus pattern (44 bp):
ATCGGCACAAGCTGGCCCTTGGTGCGGGCATTGCCTCGACTACC
Found at i:3251078 original size:90 final size:90
Alignment explanation
Indices: 3250982--3251164 Score: 221
Period size: 90 Copynumber: 2.0 Consensus size: 90
3250972 ATCGACCATT
* * ** *
3250982 ATCGGCACAGGCT-GCCCTTTGGTATGGGC-ACTTGCCTCGACTGCCATCGGCACAAGCTGGGCC
1 ATCGGCACAGGCTGGCCC-TTGGTACGGACGA-TTGCCTCGACCACCATCGGCACAAGAT-GGCC
* *
3251045 T-TGGTGC-AGGCGGTTGCCTCGATCACC
63 TCTGGTGCGA-GCGGTTGCATCGAACACC
* *
3251072 ATCGGCACATGCTGGCCCTTGGTGCGGACGATTGCCTCGACCACCATCGGCACAAGATGGCCTCT
1 ATCGGCACAGGCTGGCCCTTGGTACGGACGATTGCCTCGACCACCATCGGCACAAGATGGCCTCT
3251137 GGTGCGAGCGGTTGCATCGAACACC
66 GGTGCGAGCGGTTGCATCGAACACC
3251162 ATC
1 ATC
3251165 AGCATATGCT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
89 5 0.06
90 69 0.86
91 6 0.08
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (90 bp):
ATCGGCACAGGCTGGCCCTTGGTACGGACGATTGCCTCGACCACCATCGGCACAAGATGGCCTCT
GGTGCGAGCGGTTGCATCGAACACC
Found at i:3251162 original size:45 final size:45
Alignment explanation
Indices: 3251025--3251164 Score: 162
Period size: 45 Copynumber: 3.1 Consensus size: 45
3251015 GCCTCGACTG
*
3251025 CCATCGGCACAAGCTGGGCCT-TGGTGC-AGGCGGTTGCCTCGATCA
1 CCATCGGCACAAGCT-GGCCTCTGGTGCGA-GCGGTTGCCTCGAACA
* * *
3251070 CCATCGGCACATGCTGGCC-CTTGGTGCG-GACGATTGCCTCGACCA
1 CCATCGGCACAAGCTGGCCTC-TGGTGCGAG-CGGTTGCCTCGAACA
* *
3251115 CCATCGGCACAAGATGGCCTCTGGTGCGAGCGGTTGCATCGAACA
1 CCATCGGCACAAGCTGGCCTCTGGTGCGAGCGGTTGCCTCGAACA
3251160 CCATC
1 CCATC
3251165 AGCATATGCT
Statistics
Matches: 81, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
44 5 0.06
45 74 0.91
46 2 0.02
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGCCTCTGGTGCGAGCGGTTGCCTCGAACA
Found at i:3251174 original size:90 final size:90
Alignment explanation
Indices: 3251013--3251176 Score: 233
Period size: 90 Copynumber: 1.8 Consensus size: 90
3251003 GTATGGGCAC
** * * * *
3251013 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCTTGGTGCAGGCGGTTGCATCGAACACCATCAGC
3251078 ACATGCTGGCCCTTGGTGCGGACGA
66 ACATGCTGGCCCTTGGTGCGGACGA
3251103 TTGCCTCGACCACCATCGGCACAAGAT-GGCCTCTGGTGC-GAGCGGTTGCATCGAACACCATCA
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCT-TGGTGCAG-GCGGTTGCATCGAACACCATCA
*
3251166 GCATATGCTGG
64 GCACATGCTGG
3251177 GCACCGAACC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
89 6 0.09
90 59 0.91
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCTTGGTGCAGGCGGTTGCATCGAACACCATCAGC
ACATGCTGGCCCTTGGTGCGGACGA
Found at i:3259806 original size:26 final size:26
Alignment explanation
Indices: 3259765--3259817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3259755 CCGGTCCGAT
*
3259765 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
3259791 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3259817 C
1 C
3259818 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3260810 original size:45 final size:45
Alignment explanation
Indices: 3260761--3260908 Score: 154
Period size: 45 Copynumber: 3.3 Consensus size: 45
3260751 CAAGCATTTT
* * * *
3260761 CCTCGACCGCTATCGGCACAAGCTGGGCCCTGGTACGGGTGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* ** * * *
3260806 CCTCGATCACCATCGGCACAAAAT-GGCCCTTAGTGCAGGCGATTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGGTTG
* * * *
3260851 CATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
3260896 CCTCGACCACCAT
1 CCTCGACCACCAT
3260909 TGGTACATGT
Statistics
Matches: 80, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
44 5 0.06
45 71 0.89
46 4 0.05
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
Found at i:3261396 original size:25 final size:26
Alignment explanation
Indices: 3261361--3261412 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
3261351 CTGGTCTGAT
*
3261361 CTTAGACTGGGAATGAAC-ACATATG
1 CTTAGACTGGGAAAGAACTACATATG
* *
3261386 CTTAGATTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTACATATG
3261412 C
1 C
3261413 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTACATATG
Found at i:3261585 original size:26 final size:26
Alignment explanation
Indices: 3261556--3261608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3261546 CCGGTTCAAT
3261556 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
3261582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
3261608 C
1 C
3261609 CTCGAGCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:3261998 original size:26 final size:26
Alignment explanation
Indices: 3261947--3261999 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3261937 TCGGTCTGAT
**
3261947 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3261973 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3261999 C
1 C
3262000 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3262748 original size:26 final size:26
Alignment explanation
Indices: 3262711--3262763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3262701 CCGGTTCAAT
*
3262711 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
3262737 CTTAGACAGGGAATGAAGTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
3262763 C
1 C
3262764 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:3262938 original size:26 final size:26
Alignment explanation
Indices: 3262909--3262961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3262899 CCGATCCAAT
3262909 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
3262935 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3262961 C
1 C
3262962 CTCGACCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3263457 original size:26 final size:26
Alignment explanation
Indices: 3263421--3263473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3263411 TCGGTCTGAT
3263421 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3263447 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3263473 C
1 C
3263474 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3263803 original size:26 final size:26
Alignment explanation
Indices: 3263774--3263826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3263764 CTGATCCGAT
3263774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3263800 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3263826 C
1 C
3263827 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3263954 original size:196 final size:196
Alignment explanation
Indices: 3263603--3263981 Score: 440
Period size: 196 Copynumber: 1.9 Consensus size: 196
3263593 TCCGATTGGG
* *
3263603 GCTTAGACATGGAGTGAACTCCGTATCCCTAACCCAACCCATGAAACGAGCTTGCAGGCGCTCAG
1 GCTTAGACATGGAGTGAACTCCGTATCCCTAACCCAACCCACGAAACGAGCTTACAGGCGCTCAG
** * * ** *
3263668 CCAACTGGAGAGGCAGAATGCATAAATCGGGGACCGACCCGGTCCCCCTTACGTGCTGTCGATCC
66 CCAACCAGAAAGGCAGAATGCATAAATCGAGGACCGACCCAATCCCCCTTACGTGCTGTAGATCC
* * *
3263733 TGCTGCTGGTCCTACTGTCGCAACCCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
131 TACTGCGGGTCCTACTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
3263798 T
196 T
* * * **
3263799 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGGCAACCCACGAAACGAGCTTAC-GAGCGCTC
1 GCTTAGACATGGAG-TGAACTCCGTATCCCTAACCCAACCCACGAAACGAGCTTACAG-GCGCTC
** * * * * * * *
3263862 AGCCGGCCAGAAAGGCAGGATGCGTAAGTCGAGGATCGATCCAATCCCCTTTGCGTGCTGTAGAT
64 AGCCAACCAGAAAGGCAGAATGCATAAATCGAGGACCGACCCAATCCCCCTTACGTGCTGTAGAT
* * * *
3263927 -CTCACTGCGGGTCCTGCTGTCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGA
129 CCT-ACTGCGGGTCCTACTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGA
3263982 GCACACTACG
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
195 7 0.05
196 143 0.95
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAGTGAACTCCGTATCCCTAACCCAACCCACGAAACGAGCTTACAGGCGCTCAG
CCAACCAGAAAGGCAGAATGCATAAATCGAGGACCGACCCAATCCCCCTTACGTGCTGTAGATCC
TACTGCGGGTCCTACTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:3264849 original size:90 final size:90
Alignment explanation
Indices: 3264755--3264922 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
3264745 AGGCTACCCT
* * * *
3264755 TTGGTACGGGCAGTTGCCTCGACCGCCATCGACACAAGCTGAGCCCTGGTGCGGGCGGTTACCTC
1 TTGGTACGGGCAGTTGCATCGAACACCATCGACACAAGCTGAGCACTGGTGCGGGCGGTTACCTC
*
3264820 GACCACCATCAGCCCAAGATGGTGC
66 CACCACCATCAGCCCAAGATGGTGC
* * * * * * *
3264845 TTGGTGCGGGCGGTTGTATCGAACACCATCGACACATGCTGGGCAGTGGTGCGGGCGGTTGCCTC
1 TTGGTACGGGCAGTTGCATCGAACACCATCGACACAAGCTGAGCACTGGTGCGGGCGGTTACCTC
3264910 CACCACCATCAGC
66 CACCACCATCAGC
3264923 ACATGCCGAG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 66 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (90 bp):
TTGGTACGGGCAGTTGCATCGAACACCATCGACACAAGCTGAGCACTGGTGCGGGCGGTTACCTC
CACCACCATCAGCCCAAGATGGTGC
Found at i:3264928 original size:45 final size:44
Alignment explanation
Indices: 3264756--3264919 Score: 159
Period size: 45 Copynumber: 3.7 Consensus size: 44
3264746 GGCTACCCTT
* * * *
3264756 TGGTACGGGCAGTTGCCTCGACCGCCATCGACACAAGCTGAGCCC
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGCTG-GGCC
* * * *
3264801 TGGTGCGGGCGGTTACCTCGACCACCATC-AGCCCAAGATGGTGCT
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGA-CACAAGCTGG-GCC
** * * *
3264846 TGGTGCGGGCGGTTGTATCGAACACCATCGACACATGCTGGGCAG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGCTGGGC-C
*
3264891 TGGTGCGGGCGGTTGCCTCCACCACCATC
1 TGGTGCGGGCGGTTGCCTCGACCACCATC
3264920 AGCACATGCC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 4 0.04
45 90 0.95
46 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (44 bp):
TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGCTGGGCC
Found at i:3265427 original size:26 final size:26
Alignment explanation
Indices: 3265377--3265428 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3265367 GCCGGTCCGA
**
3265377 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACCCCGTAT
3265403 TCTTAGACTGGGAATGAACCCCGTAT
1 TCTTAGACTGGGAATGAACCCCGTAT
3265429 GCCTAAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACCCCGTAT
Found at i:3265559 original size:21 final size:21
Alignment explanation
Indices: 3265530--3265580 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
3265520 TGTGCTGTCG
* *
3265530 GTCCTGCTGCCACAACCCTCG
1 GTCCGGCTGCCACAACCCTCA
* *
3265551 GTTCGGCTGCCACATCCCTCA
1 GTCCGGCTGCCACAACCCTCA
3265572 GTCCGGCTG
1 GTCCGGCTG
3265581 GGGTTTAGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.12, C:0.43, G:0.24, T:0.22
Consensus pattern (21 bp):
GTCCGGCTGCCACAACCCTCA
Found at i:3265796 original size:26 final size:27
Alignment explanation
Indices: 3265755--3265812 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
3265745 CCGGGCCGAT
3265755 CTTAGACAGGGAATGAAC-TCTGTATG-
1 CTTAGACAGGGAATGAACTTC-GTATGC
* *
3265781 CTTAGACTGGGGATGAACTTCGTATGC
1 CTTAGACAGGGAATGAACTTCGTATGC
3265808 CTTAG
1 CTTAG
3265813 TCAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (27 bp):
CTTAGACAGGGAATGAACTTCGTATGC
Found at i:3273091 original size:26 final size:26
Alignment explanation
Indices: 3273062--3273111 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
3273052 CTGATCCGAT
3273062 CTTAGACT-GGGAATGAACTCCGTAAG
1 CTTAGACTAGGG-ATGAACTCCGTAAG
*
3273088 CTTAGACTAGGGATGAACTTCGTA
1 CTTAGACTAGGGATGAACTCCGTA
3273112 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTAAG
Found at i:3274090 original size:45 final size:43
Alignment explanation
Indices: 3274040--3274186 Score: 123
Period size: 45 Copynumber: 3.3 Consensus size: 43
3274030 GCACAGGCTA
* *
3274040 CCCTTGGTACGAGCACTTGCCTCGACCGCCATCGACACAAGCTGG
1 CCCTTGGTGCG-GCA-TTGCCTCGACCGCCATCGACACAAGCCGG
* * * * *
3274085 GCCTTGGTGCTGGCGGTTACCTCGATCGCCATCGACACATGCCGG
1 CCCTTGGTGC-GGC-ATTGCCTCGACCGCCATCGACACAAGCCGG
* * * **
3274130 CCCTTGGTGTGGGCGATTGCCTCGACCACCATCGACCCAAGATGG
1 CCCTTGGTG-CGGC-ATTGCCTCGACCGCCATCGACACAAGCCGG
*
3274175 CCCCTGGTGCGG
1 CCCTTGGTGCGG
3274187 GTGGTTGCAT
Statistics
Matches: 80, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
44 2 0.03
45 77 0.96
46 1 0.01
ACGTcount: A:0.16, C:0.35, G:0.29, T:0.20
Consensus pattern (43 bp):
CCCTTGGTGCGGCATTGCCTCGACCGCCATCGACACAAGCCGG
Found at i:3274228 original size:90 final size:90
Alignment explanation
Indices: 3274056--3274258 Score: 208
Period size: 90 Copynumber: 2.3 Consensus size: 90
3274046 GTACGAGCAC
* * * * * * * *
3274056 TTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGCTGGCGGTTACCTCGATCGCCATCGAC
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
* * * *
3274121 ACATGCCGGCCCTTGGTGTGGGCGA
66 ACATACCGGCCCATGGTGCGGGCAA
* * * *
3274146 TTGCCTCGACCACCATCGACCCAAGATGGCCCCTGGTGCGGGTGGTTGCATCGAACACCATCGGC
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
* **
3274211 ACATACTGGGTCATGGTGCGGGCAA
66 ACATACCGGCCCATGGTGCGGGCAA
* * *
3274236 TTGCCTTGACCACCGTCGGCACA
1 TTGCCTCGACCACCATCGACACA
3274259 TGCCGAGCCC
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
ACATACCGGCCCATGGTGCGGGCAA
Found at i:3275077 original size:26 final size:26
Alignment explanation
Indices: 3275041--3275093 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3275031 CCAGACTGAT
*
3275041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
3275067 CTTAGATTGGGGATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
3275093 C
1 C
3275094 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:3275237 original size:195 final size:195
Alignment explanation
Indices: 3274884--3275254 Score: 444
Period size: 195 Copynumber: 1.9 Consensus size: 195
3274874 TAGGCATGGA
* * * *
3274884 ATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGACAGGAGAGG
1 ATGAAATCCGTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAGCCGACAGGAGAGG
* * * * *
3274949 CAGAATGCGCAAGCCGGGGATCAGCCAGTCCCCCCTGCGTGCTGCCAATCCTGCTACTGGTCCTA
66 CAGAATGCACAAGCCGAGGATAACCCAGTCCCCCCTGCATGCTGCCAATCCTGCTACTGGTCCTA
* *
3275014 CTGCCGTAACCCTCAGTCCAGACTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
131 CTACCGCAACCCTCAGTCCAGACTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
* ** * *
3275079 ATGAAATCTGTATGCCTAAGTCAACCAATGAAACGAGCATGCGGGCGCTCAGCCGACCA-GAGAG
1 ATGAAATCCGTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAGCCGA-CAGGAGAG
* * * *
3275143 GCAGGATGCACAAGTCGAGGATAACCCAGTCCCCTCTGCATGCTTCCAAT-CT-C-ACTGTGGGT
65 GCAGAATGCACAAGCCGAGGATAACCCAGTCCCCCCTGCATGCTGCCAATCCTGCTAC--T-GGT
* * * * * *
3275205 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAGTGAACT
127 CCTACTACCGCAACCCTCAGTCCAGACTGATCTTAGACTGGGAATGAACT
3275255 ATGTATGGCT
Statistics
Matches: 146, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
192 2 0.01
193 1 0.01
194 3 0.02
195 138 0.95
196 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (195 bp):
ATGAAATCCGTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAGCCGACAGGAGAGG
CAGAATGCACAAGCCGAGGATAACCCAGTCCCCCCTGCATGCTGCCAATCCTGCTACTGGTCCTA
CTACCGCAACCCTCAGTCCAGACTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
Found at i:3276161 original size:26 final size:26
Alignment explanation
Indices: 3276123--3276175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3276113 CTGGCTCGAT
* * *
3276123 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
3276149 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
3276175 C
1 C
3276176 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:3276507 original size:26 final size:26
Alignment explanation
Indices: 3276466--3276518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3276456 GTGATCTGAT
3276466 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3276492 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
3276518 C
1 C
3276519 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3278244 original size:195 final size:195
Alignment explanation
Indices: 3277894--3278270 Score: 435
Period size: 195 Copynumber: 1.9 Consensus size: 195
3277884 TCCGACTGGG
* *
3277894 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACAAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAAGCGCTCAG
* * * * *
3277959 TCAGCCAGAGGGGCAGAATGCACAAGCCGGGGGTCAGCCCGGTCCCCCTGCGTGCTATCGATCCT
66 CCAGCCAGAGGGGCAGAATACACAAGCCGAGGATCAGCCCGGTCCCCCTACGTGCTATCGATCCT
* *
3278024 GCTGCTGGTCCTACTACAGTAACCCTC-GATCGGGTTCGATCTTAGACTTGGAATGAACTCCGTA
131 GCTGCAGGTCCTACTACAGTAACCCTCAG-TCGGGTTCAATCTTAGACTTGGAATGAACTCCGTA
3278088 T
195 T
* ** * * **
3278089 GCTTAGAC-TGGGGATGAACTTTGTATGCC-AAGTCAACCCATGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAAGCGCTCA
** * *
3278152 GCC-GACCAGAGGGGCAGAATACGTAAGTCGAGGATC-GACCTGGTCCCCTCTACGTGCTATCGA
65 GCCAG-CCAGAGGGGCAGAATACACAAGCCGAGGATCAG-CCCGGTCCCC-CTACGTGCTATCGA
* * *
3278215 T-CTCGTTGCAGGTCCTGCTACCA-TAACCCTCAGTCTGGTTCAATCTTAGACTTGGA
127 TCCT-GCTGCAGGTCCTACTA-CAGTAACCCTCAGTCGGGTTCAATCTTAGACTTGGA
3278271 GCATACTACG
Statistics
Matches: 152, Mismatches: 23, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
193 2 0.01
194 67 0.44
195 80 0.53
196 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAAGCGCTCAG
CCAGCCAGAGGGGCAGAATACACAAGCCGAGGATCAGCCCGGTCCCCCTACGTGCTATCGATCCT
GCTGCAGGTCCTACTACAGTAACCCTCAGTCGGGTTCAATCTTAGACTTGGAATGAACTCCGTAT
Found at i:3279105 original size:45 final size:44
Alignment explanation
Indices: 3279053--3279243 Score: 154
Period size: 45 Copynumber: 4.3 Consensus size: 44
3279043 CACTTACCTG
* **
3279053 GACCACCATCGGCACAAATTGGGCCCTGGTGTGGGCGGTTGCCTC
1 GACCACCATCAGCACAAA-TGGGCCCTGGTACGGGCGGTTGCCTC
* * * *
3279098 GATCACCATCAGCAC--ATGCCAGCCCTTGGTACGGGTGATTGCCTC
1 GACCACCATCAGCACAAATG--GGCCC-TGGTACGGGCGGTTGCCTC
* * * *
3279143 GACCACCATCGGCACAAGATGGCCCCTGGTACGGGTGGTTGCGTC
1 GACCACCATCAGCACAA-ATGGGCCCTGGTACGGGCGGTTGCCTC
* * * * * *
3279188 GAACACCATCAGCACATATTGGG-CCTGGTGCAGCCAGTTGCCTC
1 GACCACCATCAGCACA-AATGGGCCCTGGTACGGGCGGTTGCCTC
3279232 GACCACCATCAG
1 GACCACCATCAG
3279244 TACATGCTGA
Statistics
Matches: 115, Mismatches: 24, Indels: 15
0.75 0.16 0.10
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 30 0.26
45 75 0.65
46 4 0.03
48 3 0.03
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (44 bp):
GACCACCATCAGCACAAATGGGCCCTGGTACGGGCGGTTGCCTC
Found at i:3279127 original size:90 final size:91
Alignment explanation
Indices: 3279028--3279204 Score: 225
Period size: 90 Copynumber: 2.0 Consensus size: 91
3279018 GACACAGGCT
* * * **
3279028 GCCCTTTGGTATGGG-CACTTACCTGGACCACCATCGGCACAA-ATTGGGCCCTGGTGTGGGCGG
1 GCCCTTTGGTACGGGTCA-TTACCTCGACCACCATCGGCACAAGA-TGGCCCCTGGTACGGGCGG
*
3279091 TTGCCTCGATCACCATCAGCACATGCCA
64 TTGCCTCGAACACCATCAGCACATGCCA
* * *
3279119 GCCC-TTGGTACGGGTGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGTGGTT
1 GCCCTTTGGTACGGGTCATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTT
*
3279183 GCGTCGAACACCATCAGCACAT
66 GCCTCGAACACCATCAGCACAT
3279205 ATTGGGCCTG
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
90 68 0.92
91 6 0.08
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (91 bp):
GCCCTTTGGTACGGGTCATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTT
GCCTCGAACACCATCAGCACATGCCA
Found at i:3279737 original size:26 final size:26
Alignment explanation
Indices: 3279701--3279753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3279691 TTAGTTCGAT
* *
3279701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
3279727 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
3279753 C
1 C
3279754 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:3280977 original size:45 final size:44
Alignment explanation
Indices: 3280925--3281115 Score: 154
Period size: 45 Copynumber: 4.3 Consensus size: 44
3280915 CACTTACCTG
* **
3280925 GACCACCATCGGCACAAATTGGGCCCTGGTGTGGGCGGTTGCCTC
1 GACCACCATCAGCACAAA-TGGGCCCTGGTACGGGCGGTTGCCTC
* * * *
3280970 GATCACCATCAGCAC--ATGCCAGCCCTTGGTACGGGTGATTGCCTC
1 GACCACCATCAGCACAAATG--GGCCC-TGGTACGGGCGGTTGCCTC
* * * *
3281015 GACCACCATCGGCACAAGATGGCCCCTGGTACGGGTGGTTGCGTC
1 GACCACCATCAGCACAA-ATGGGCCCTGGTACGGGCGGTTGCCTC
* * * * * *
3281060 GAACACCATCAGCACATATTGGG-CCTGGTGCAGCCAGTTGCCTC
1 GACCACCATCAGCACA-AATGGGCCCTGGTACGGGCGGTTGCCTC
3281104 GACCACCATCAG
1 GACCACCATCAG
3281116 TACATGCTGA
Statistics
Matches: 115, Mismatches: 24, Indels: 15
0.75 0.16 0.10
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 30 0.26
45 75 0.65
46 4 0.03
48 3 0.03
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (44 bp):
GACCACCATCAGCACAAATGGGCCCTGGTACGGGCGGTTGCCTC
Found at i:3280999 original size:90 final size:91
Alignment explanation
Indices: 3280900--3281076 Score: 225
Period size: 90 Copynumber: 2.0 Consensus size: 91
3280890 GACACAGGCT
* * * **
3280900 GCCCTTTGGTATGGG-CACTTACCTGGACCACCATCGGCACAA-ATTGGGCCCTGGTGTGGGCGG
1 GCCCTTTGGTACGGGTCA-TTACCTCGACCACCATCGGCACAAGA-TGGCCCCTGGTACGGGCGG
*
3280963 TTGCCTCGATCACCATCAGCACATGCCA
64 TTGCCTCGAACACCATCAGCACATGCCA
* * *
3280991 GCCC-TTGGTACGGGTGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGTGGTT
1 GCCCTTTGGTACGGGTCATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTT
*
3281055 GCGTCGAACACCATCAGCACAT
66 GCCTCGAACACCATCAGCACAT
3281077 ATTGGGCCTG
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
90 68 0.92
91 6 0.08
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (91 bp):
GCCCTTTGGTACGGGTCATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTT
GCCTCGAACACCATCAGCACATGCCA
Found at i:3281609 original size:26 final size:26
Alignment explanation
Indices: 3281573--3281625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3281563 TTAGTTCGAT
* *
3281573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
3281599 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
3281625 C
1 C
3281626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:3282254 original size:26 final size:26
Alignment explanation
Indices: 3282225--3282281 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
3282215 GGAAGACCCG
*
3282225 TTTTCTATT-TTTCATGA-TTTTCAAAA
1 TTTT-TATTGTTTCA-GATTTTTAAAAA
*
3282251 TTTTTATTGTTTGAGATTTTTAAAAA
1 TTTTTATTGTTTCAGATTTTTAAAAA
3282277 TTTTT
1 TTTTT
3282282 TTAGTAGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.61
Consensus pattern (26 bp):
TTTTTATTGTTTCAGATTTTTAAAAA
Found at i:3285088 original size:26 final size:26
Alignment explanation
Indices: 3285057--3285109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3285047 TCGGTATGAT
*
3285057 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3285083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3285109 C
1 C
3285110 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3285357 original size:159 final size:158
Alignment explanation
Indices: 3285082--3285377 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 158
3285072 AACTTCGTAT
* *
3285082 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCAC-GAA
* * * * * *
3285147 CCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTCCACCTCTACGTACTGTCGGTC
65 CCGGCCAAAAAGGCATAATGCGCAAGCAGAGGATCGACCCAGTCCACCTCTACGTACTGTCGATC
3285212 CCGCTGCCACAACCCTCGGTCCGGTTGGG
130 CCGCTGCCACAACCCTCGGTCCGGTTGGG
* *
3285241 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGGCAC-
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGC--GGGCACG
** * *
3285304 AATTGGCCAAAAAGGCATAATGCGCAAGTCAG-GGATCGACTC-GATCC-CTCTCTACGTGCTGT
63 AACCGGCCAAAAAGGCATAATGCGCAAG-CAGAGGATCGACCCAG-TCCAC-CTCTACGTACTGT
*
3285366 CGATCCTGCTGC
125 CGATCCCGCTGC
3285378 TAGTCCTGCA
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
158 2 0.02
159 105 0.91
160 3 0.03
161 6 0.05
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACGAAC
CGGCCAAAAAGGCATAATGCGCAAGCAGAGGATCGACCCAGTCCACCTCTACGTACTGTCGATCC
CGCTGCCACAACCCTCGGTCCGGTTGGG
Found at i:3285441 original size:25 final size:26
Alignment explanation
Indices: 3285413--3285464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3285403 TTGGTCCGAT
3285413 CTTAGACT-AGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
3285438 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3285464 C
1 C
3285465 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:3286490 original size:45 final size:45
Alignment explanation
Indices: 3286441--3286556 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
3286431 CGGGGCCCTA
* * *
3286441 GTGCGGGTGGTTGCCTCGACCACCATTAGCACAAGATGGCCCTTG
1 GTGCGGGCGGTTGCATCGACCACCATTAGCACAAGATGGCCCGTG
* * * * * *
3286486 GTGCGGGCGGTTGCATCGAACACCATTGGTACATGCTGGGCCGTG
1 GTGCGGGCGGTTGCATCGACCACCATTAGCACAAGATGGCCCGTG
* *
3286531 GTGCAGGCGGTTGCTTCGACCACCAT
1 GTGCGGGCGGTTGCATCGACCACCAT
3286557 CGGCACATTC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.16, C:0.28, G:0.34, T:0.22
Consensus pattern (45 bp):
GTGCGGGCGGTTGCATCGACCACCATTAGCACAAGATGGCCCGTG
Found at i:3287044 original size:26 final size:26
Alignment explanation
Indices: 3287008--3287058 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3286998 GATCCGATCC
*
3287008 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
3287034 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
3287059 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:3287389 original size:26 final size:26
Alignment explanation
Indices: 3287360--3287412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3287350 CCTATCCCAT
* *
3287360 CTTAGATTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3287386 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3287412 C
1 C
3287413 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.