Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 3 of 120
Found at i:236095 original size:60 final size:59
Alignment explanation
Indices: 235681--236099 Score: 508
Period size: 60 Copynumber: 7.0 Consensus size: 59
235671 TCTTGTGTAG
* * * *
235681 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAAGTCCTTTTTTTGAAAATTT-ACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-T-ATTTTTTGGAAATTTTGATTTTTAA
* * **
235741 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAA-TT-TTGAT-TTTTAA
*
235803 GGAAAATTGATAATTTCAACTTTTCCCT-AAAATATTTTTTGGAAATTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTTAA
* * * *
235861 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATTCTTTTTTTTGAAAATTT-ACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-T-ATTTTTTGGAAATTTTGATTTTTAA
* * **
235921 GGAAAATTGATACTTTCAACTTTTCCCCACAAATATTTTTTGGAAATTTATTTTTGTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAA-TT-TTGAT-TTTTAA
*
235983 GGAAAATTGATACTCTCAACTTTTCCCT-AAAATATTTTTTGGAAATTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTTAA
*
236041 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAATTTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTTGATTTTTA
236100 TTTAAAGAAA
Statistics
Matches: 312, Mismatches: 31, Indels: 32
0.83 0.08 0.09
Matches are distributed among these distances:
57 3 0.01
58 82 0.26
59 20 0.06
60 94 0.30
61 50 0.16
62 63 0.20
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTTAA
Found at i:236144 original size:23 final size:24
Alignment explanation
Indices: 236108--236182 Score: 84
Period size: 23 Copynumber: 3.1 Consensus size: 24
236098 TATTTAAAGA
236108 AAATAGAATAATAAA-ACAAAAAAT
1 AAATAGAATAATAAATA-AAAAAAT
236132 AAATA-AATAATAAATAAAAAAAT
1 AAATAGAATAATAAATAAAAAAAT
* *
236155 AAAGAAAAGTAA-AAATATAAAAAAT
1 AAATAGAA-TAATAAATA-AAAAAAT
236180 AAA
1 AAA
236183 ATAAAGATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
23 20 0.43
24 13 0.28
25 13 0.28
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (24 bp):
AAATAGAATAATAAATAAAAAAAT
Found at i:236162 original size:11 final size:11
Alignment explanation
Indices: 236117--236195 Score: 52
Period size: 11 Copynumber: 6.7 Consensus size: 11
236107 AAAATAGAAT
236117 AATAAAACAAAA
1 AATAAAA-AAAA
* *
236129 AATAAATAAAT
1 AATAAAAAAAA
236140 AATAAATAAAAA
1 AATAAA-AAAAA
236152 AATAAAGAAAAGTA
1 AATAAA-AAAA--A
*
236166 AA-AATATAAAA
1 AATAA-AAAAAA
*
236177 AATAAAATAAA
1 AATAAAAAAAA
*
236188 GATAAAAA
1 AATAAAAA
236196 GAATATTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
11 22 0.42
12 21 0.40
13 5 0.10
14 4 0.08
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.16
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:236196 original size:8 final size:7
Alignment explanation
Indices: 236114--236183 Score: 59
Period size: 8 Copynumber: 9.0 Consensus size: 7
236104 AAGAAAATAG
236114 AATAATAA
1 AATAA-AA
*
236122 AACAAAA
1 AATAAAA
236129 AATAAATA
1 AATAAA-A
*
236137 AATAATA
1 AATAAAA
236144 AATAAAAA
1 AAT-AAAA
236152 AATAAAGAA
1 AAT-AA-AA
236161 AAGTAAAA
1 AA-TAAAA
236169 ATATAAAA
1 A-ATAAAA
236177 AATAAAA
1 AATAAAA
236184 TAAAGATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
7 17 0.32
8 28 0.53
9 7 0.13
10 1 0.02
ACGTcount: A:0.79, C:0.01, G:0.03, T:0.17
Consensus pattern (7 bp):
AATAAAA
Found at i:236196 original size:33 final size:32
Alignment explanation
Indices: 236117--236209 Score: 77
Period size: 33 Copynumber: 2.8 Consensus size: 32
236107 AAAATAGAAT
*
236117 AATAAAACAAAAAA-TAAATAAATAATAAATAA
1 AATAAAA-AAAAAAGTAAATAAATAAAAAATAA
236149 AA-AAATAAAGAAAAGTAAA-AATATAAAAAATAA
1 AATAAA-AAA-AAAAGTAAATAA-ATAAAAAATAA
*
236182 AATAAAGATAAAAAG-AATATTAAATAAA
1 AATAAA-AAAAAAAGTAA-A-TAAATAAA
236210 CCTAATCTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
31 5 0.10
32 11 0.22
33 22 0.44
34 10 0.20
35 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (32 bp):
AATAAAAAAAAAAGTAAATAAATAAAAAATAA
Found at i:236200 original size:20 final size:21
Alignment explanation
Indices: 236159--236200 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
236149 AAAAATAAAG
236159 AAAAGTAAAAATATAAAAAAT
1 AAAAGTAAAAATATAAAAAAT
*
236180 AAAA-TAAAGATA-AAAAGAAT
1 AAAAGTAAAAATATAAAA-AAT
236200 A
1 A
236201 TTAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (21 bp):
AAAAGTAAAAATATAAAAAAT
Found at i:237182 original size:30 final size:29
Alignment explanation
Indices: 237129--237202 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 29
237119 TAATTAGAAC
* *
237129 AGATAAATCGAAAAAAAATAGATATATTA-T
1 AGATAAAT--AAAAAAAACAGATATATAATT
237159 AGGATAAATAAAAAATAACAGATATATAATT
1 A-GATAAATAAAAAA-AACAGATATATAATT
237190 AGATAAATAAAAA
1 AGATAAATAAAAA
237203 TACAAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 6 0.15
30 24 0.62
31 9 0.23
ACGTcount: A:0.64, C:0.03, G:0.09, T:0.24
Consensus pattern (29 bp):
AGATAAATAAAAAAAACAGATATATAATT
Found at i:237221 original size:17 final size:18
Alignment explanation
Indices: 237192--237230 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
237182 ATATAATTAG
237192 ATAAATAAAAATACAAAA
1 ATAAATAAAAATACAAAA
*
237210 ATAAAT-AAAATATAAAA
1 ATAAATAAAAATACAAAA
237227 ATAA
1 ATAA
237231 TAATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
ATAAATAAAAATACAAAA
Found at i:237234 original size:3 final size:3
Alignment explanation
Indices: 237213--237256 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
237203 TACAAAAATA
*
237213 AAT AA- AAT -AT AAA AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
237257 ATATATAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 6 0.17
3 30 0.83
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:237259 original size:12 final size:12
Alignment explanation
Indices: 237195--237365 Score: 60
Period size: 12 Copynumber: 14.6 Consensus size: 12
237185 TAATTAGATA
*
237195 AATAA-AAATAC
1 AATAATAAATAT
* *
237206 AAAAATAAATAA
1 AATAATAAATAT
*
237218 AAT-ATAAAAAT
1 AATAATAAATAT
237229 AATAAT--A-AT
1 AATAATAAATAT
237238 AATAAT-AATAT
1 AATAATAAATAT
237249 AATAATAAATAT
1 AATAATAAATAT
*
237261 -ATAACTATATA-
1 AATAA-TAAATAT
* *
237272 AATAATATACAT
1 AATAATAAATAT
**
237284 -ATAA-ATCTAT
1 AATAATAAATAT
** *
237294 TCTAAATAAAAAT
1 AAT-AATAAATAT
*
237307 AATAATAAATAC
1 AATAATAAATAT
237319 AGAT-ATACATATATT
1 A-ATAATA-A-ATA-T
237334 AATACAT-AATAAT
1 AATA-ATAAAT-AT
237347 AATAATAAATAT
1 AATAATAAATAT
*
237359 AAAAATA
1 AATAATA
237366 CATAAAATAC
Statistics
Matches: 122, Mismatches: 19, Indels: 37
0.69 0.11 0.21
Matches are distributed among these distances:
9 8 0.07
10 6 0.05
11 35 0.29
12 46 0.38
13 17 0.14
14 7 0.06
15 1 0.01
16 2 0.02
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:237285 original size:23 final size:21
Alignment explanation
Indices: 237208--237287 Score: 53
Period size: 20 Copynumber: 3.8 Consensus size: 21
237198 AAAAATACAA
* *
237208 AAATAAATAAAATATAA-AAAT
1 AAAT-AATATAATATAATATAT
237229 -AATAATAATAATAATAATATA-
1 AAATAAT-ATAAT-ATAATATAT
237250 ATAATAA-AT-ATATAACTATAT
1 A-AATAATATAATATAA-TATAT
237271 AAATAATATACATATAA
1 AAATAATATA-ATATAA
237288 ATCTATTCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
19 7 0.15
20 18 0.38
21 9 0.19
22 2 0.04
23 11 0.23
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATAATATAATATAATATAT
Found at i:237319 original size:37 final size:39
Alignment explanation
Indices: 237221--237357 Score: 106
Period size: 40 Copynumber: 3.5 Consensus size: 39
237211 TAAATAAAAT
*
237221 ATAAAAATAATAAT-AAT--AATA-ATAATATAATAATAA
1 ATAAAAATAATAATAAATACAATATA-AATATATTAATAA
* * *
237257 ATATATAACTATATAAATAATATAC-ATATAAATCTATT-CTAA
1 ATA-A-AAATA-AT-AATAA-ATACAATATAAATATATTAATAA
* *
237299 ATAAAAATAATAATAAATACAGATATACATATATTAATAC
1 ATAAAAATAATAATAAATACA-ATATAAATATATTAATAA
*
237339 ATAATAATAATAATAAATA
1 ATAAAAATAATAATAAATA
237358 TAAAAATACA
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
36 3 0.04
37 5 0.06
38 9 0.11
39 15 0.19
40 27 0.34
41 2 0.03
42 8 0.10
43 9 0.11
44 1 0.01
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (39 bp):
ATAAAAATAATAATAAATACAATATAAATATATTAATAA
Found at i:237353 original size:9 final size:10
Alignment explanation
Indices: 237226--237376 Score: 53
Period size: 9 Copynumber: 15.9 Consensus size: 10
237216 AAAATATAAA
237226 AATAATA-AT
1 AATAATACAT
237235 AATAATA-AT
1 AATAATACAT
237244 AAT-ATA-AT
1 AATAATACAT
*
237252 AATAAATATAT
1 AAT-AATACAT
*
237263 AACTATATAAAT
1 AA-TA-ATACAT
237275 AAT-ATACAT
1 AATAATACAT
237284 -ATAA-ATC-T
1 AATAATA-CAT
** *
237292 -ATTCTAAAT
1 AATAATACAT
*
237301 AAAAATA-AT
1 AATAATACAT
237310 AATAAATACA-
1 AAT-AATACAT
*
237320 GAT-ATACAT
1 AATAATACAT
237329 ATATTAATACAT
1 A-A-TAATACAT
237341 AATAATA-AT
1 AATAATACAT
*
237350 AATAA-ATAT
1 AATAATACAT
*
237359 AAAAATACAT
1 AATAATACAT
237369 AA-AATACA
1 AATAATACA
237377 AAAGAAAAGA
Statistics
Matches: 111, Mismatches: 13, Indels: 36
0.69 0.08 0.22
Matches are distributed among these distances:
8 20 0.18
9 44 0.40
10 23 0.21
11 9 0.08
12 15 0.14
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.32
Consensus pattern (10 bp):
AATAATACAT
Found at i:237572 original size:1 final size:1
Alignment explanation
Indices: 237566--237628 Score: 63
Period size: 1 Copynumber: 63.0 Consensus size: 1
237556 AACATTGTCA
* * * * * * *
237566 TTTTTTTTGTTTTTTTTGTTCTTTTTTTTGTTTTTTTTGTGTTTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
237629 ACCAAAGCTC
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:237575 original size:12 final size:10
Alignment explanation
Indices: 237566--237625 Score: 86
Period size: 10 Copynumber: 5.8 Consensus size: 10
237556 AACATTGTCA
237566 TTTTTTTTG-
1 TTTTTTTTGT
237575 TTTTTTTTGTT
1 TTTTTTTTG-T
237586 CTTTTTTTTGT
1 -TTTTTTTTGT
237597 TTTTTTTGTGT
1 TTTTTTT-TGT
237608 TTTTTTTTGT
1 TTTTTTTTGT
237618 TTTTTTTT
1 TTTTTTTT
237626 TTTACCAAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.19
10 18 0.38
11 11 0.23
12 9 0.19
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:237590 original size:21 final size:21
Alignment explanation
Indices: 237566--237624 Score: 102
Period size: 21 Copynumber: 2.8 Consensus size: 21
237556 AACATTGTCA
237566 TTTTTTTTGTTTTTTTTGT-T
1 TTTTTTTTGTTTTTTTTGTGT
237586 CTTTTTTTTGTTTTTTTTGTGT
1 -TTTTTTTTGTTTTTTTTGTGT
237608 TTTTTTTTGTTTTTTTT
1 TTTTTTTTGTTTTTTTT
237625 TTTTACCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 36 0.97
22 1 0.03
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTTGTGT
Found at i:237693 original size:41 final size:41
Alignment explanation
Indices: 237635--237858 Score: 394
Period size: 41 Copynumber: 5.4 Consensus size: 41
237625 TTTTACCAAA
*
237635 GCTCCTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
237676 TCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
237718 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
237759 GCTCCTCAAAACAGAAGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
237800 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
237841 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAAACAGAGGC
237859 TTGCTCCTCT
Statistics
Matches: 173, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
41 134 0.77
42 39 0.23
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:237779 original size:83 final size:82
Alignment explanation
Indices: 237635--237855 Score: 388
Period size: 83 Copynumber: 2.7 Consensus size: 82
237625 TTTTACCAAA
* * *
237635 GCTCCTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATTTCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAAGCACCACG
237700 ACTTTGGAAAAATAAATT
66 ACTTTGG-AAAATAAATT
*
237718 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCAAAACAGAAGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAAGCACCACG
*
237783 ACTTTGGAAAGTAAATT
66 ACTTTGGAAAATAAATT
237800 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA
237856 GGCTTGCTCC
Statistics
Matches: 132, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 64 0.48
83 68 0.52
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAAGCACCACG
ACTTTGGAAAATAAATT
Found at i:237864 original size:20 final size:20
Alignment explanation
Indices: 237839--237878 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
237829 GGAAAGTAAA
237839 TTGCTCCTCTAAACAGAGGC
1 TTGCTCCTCTAAACAGAGGC
*
237859 TTGCTCCTCTAAATAGAGGC
1 TTGCTCCTCTAAACAGAGGC
237879 ACCACGACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (20 bp):
TTGCTCCTCTAAACAGAGGC
Found at i:237900 original size:61 final size:61
Alignment explanation
Indices: 237798--237919 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
237788 GGAAAGTAAA
*
237798 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGC
* * *
237859 TTGCTCCTCTAAATAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTATACAGAGGC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGC
237920 ACCACGACTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (61 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGC
Found at i:237918 original size:41 final size:41
Alignment explanation
Indices: 237859--237960 Score: 161
Period size: 41 Copynumber: 2.5 Consensus size: 41
237849 AAACAGAGGC
*
237859 TTGCTCCTCTAAATAGAGGCACCACGACTTTTG-AAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAA
*
237900 TTGCTCCTCTATACAGAGGCACCACGACTTTGAAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
*
237941 TTACTCCTCTAAACAGAGGC
1 TTGCTCCTCTAAACAGAGGC
237961 TTGCTCCTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
40 4 0.07
41 52 0.93
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (41 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
Found at i:237941 original size:102 final size:102
Alignment explanation
Indices: 237757--238061 Score: 520
Period size: 102 Copynumber: 3.0 Consensus size: 102
237747 GGAAAGTAAA
* * * *
237757 TTGCTCCTCAAAACAGAAGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
* *
237822 CGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGC
66 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGC
* *
237859 TTGCTCCTCTAAATAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTATACAGAGGCACCA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
*
237924 CGACTTTGAAAAATAAATTACTCCTCTAAACAGAGGC
66 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGC
*
237961 TTGCTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
238026 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGG
66 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGG
238062 TACCACGACT
Statistics
Matches: 190, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 190 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (102 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCA
CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGC
Found at i:237965 original size:61 final size:61
Alignment explanation
Indices: 237900--238021 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 61
237890 TGAAAATAAA
* *
237900 TTGCTCCTCTATACAGAGGCACCACGAC-TTTGAAAAATAAATTACTCCTCTAAACAGAGGC
1 TTGCTCCTCTAAACAGAGGCACCAAGACTTTTG-AAAATAAATTACTCCTCTAAACAGAGGC
*
237961 TTGCTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGC
1 TTGCTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTACTCCTCTAAACAGAGGC
238022 ACCACGACTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 53 0.93
62 4 0.07
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (61 bp):
TTGCTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTACTCCTCTAAACAGAGGC
Found at i:238006 original size:143 final size:142
Alignment explanation
Indices: 237677--238106 Score: 489
Period size: 143 Copynumber: 3.0 Consensus size: 142
237667 AAGTAAATTT
* *
237677 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCACCAAGACTTTTG-AAAATAAATTGCTCCTCTAAACAGAGGCACCACG
* * * * * *
237742 ACTTTGGAAAGTAAATTGCTCCTCAAAACAGAAGCACCACGACTTTGGAAAGTAAATTGCTCCTC
65 ACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTC
237807 TAAACAGAGGCAC
130 TAAACAGAGGCAC
* * ** * * * ** *
237820 CACGACTTTGGA-A-A-GTA--AATTG-CTCCTCT-AAACAGAGGCTTGCTCCTCTAAATAGAGG
1 CTC--CTCTAAACAGAGGCACCAA--GACT--TTTGAAA-ATA-AATTGCTCCTCTAAACAGAGG
*
237878 CACCACGACTTTTGAAAATAAATTGCTCCTCTATACAGAGGCACCACGACTTTGAAAAATAAATT
58 CACCACGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* **
237943 ACTCCTCTAAACAGAGGCTTG
123 GCTCCTCTAAACAGAGGC-AC
237964 CTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
1 CTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
* *
238029 C-TTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAATTGCTCCTT
66 CTTTTG-AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTC
238093 TAAACAGAGGCAC
130 TAAACAGAGGCAC
238106 C
1 C
238107 ACGACTTTGA
Statistics
Matches: 232, Mismatches: 38, Indels: 35
0.76 0.12 0.11
Matches are distributed among these distances:
140 1 0.00
141 5 0.02
142 14 0.06
143 190 0.82
144 8 0.03
145 10 0.04
146 2 0.01
147 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (142 bp):
CTCCTCTAAACAGAGGCACCAAGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
CTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCT
AAACAGAGGCAC
Found at i:238133 original size:41 final size:41
Alignment explanation
Indices: 237961--238132 Score: 292
Period size: 41 Copynumber: 4.2 Consensus size: 41
237951 AAACAGAGGC
*
237961 TTGCTCCTCTAAACAGAGGCACCAAGACTTTTG-AAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAA
238002 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
*
238043 TTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
* *
238084 TTGCTCCTTTAAACAGAGGCACCACGACTTTGAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
238125 TTGCTCCT
1 TTGCTCCT
238133 TGACAATCAT
Statistics
Matches: 125, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
40 4 0.03
41 121 0.97
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (41 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
Found at i:239360 original size:17 final size:18
Alignment explanation
Indices: 239338--239375 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
239328 CTTTTTTTCA
239338 TTTTC-TCATTTCTTTTT
1 TTTTCTTCATTTCTTTTT
**
239355 TTTTCTTTTTTTCTTTTT
1 TTTTCTTCATTTCTTTTT
239373 TTT
1 TTT
239376 CCCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTCTTCATTTCTTTTT
Found at i:239361 original size:10 final size:10
Alignment explanation
Indices: 239346--239388 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
239336 CATTTTCTCA
239346 TTTCTTTTTT
1 TTTCTTTTTT
239356 TTTC--TTTT
1 TTTCTTTTTT
239364 TTTCTTTTTT
1 TTTCTTTTTT
*
239374 TTCCCTTTTTT
1 TT-TCTTTTTT
239385 TTTC
1 TTTC
239389 ATCATCCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:239363 original size:8 final size:8
Alignment explanation
Indices: 239327--239374 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
239317 AATTTGAATC
239327 TCTTTTTT
1 TCTTTTTT
* *
239335 TCATTTTC
1 TCTTTTTT
* *
239343 TCATTTCT
1 TCTTTTTT
239351 T-TTTTTT
1 TCTTTTTT
239358 TCTTTTTT
1 TCTTTTTT
239366 TCTTTTTT
1 TCTTTTTT
239374 T
1 T
239375 TCCCTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 5 0.15
8 28 0.85
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (8 bp):
TCTTTTTT
Found at i:239367 original size:18 final size:19
Alignment explanation
Indices: 239346--239385 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
239336 CATTTTCTCA
*
239346 TTTCTTTTTTTT-TCTTTT
1 TTTCTTTTTTTTCCCTTTT
239364 TTTCTTTTTTTTCCCTTTT
1 TTTCTTTTTTTTCCCTTTT
239383 TTT
1 TTT
239386 TTCATCATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTCTTTTTTTTCCCTTTT
Found at i:243362 original size:60 final size:58
Alignment explanation
Indices: 243269--243673 Score: 507
Period size: 60 Copynumber: 6.8 Consensus size: 58
243259 TCTTATGTAG
*
243269 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTCGA-TTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTT--ATTTTTCAA
243329 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTC----AA
* * * *
243391 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAGTCCTTTTTTTGAAAATTTACTTTT-AA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-T--ATTTTTTGGAAATTTATTTTTCAA
243451 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTC----AA
* *
243513 GGAAAATTGATACTCTCAACTTTT-CCCTAAAATATTTTTTGGAAATTTTGATTTTT-AA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTT-ATTTTTCAA
* *
243571 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAGTCTTTTTT-GAAATTTATTTTT-AA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTTTCAA
* *
243628 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAA
243674 TTTTTTATTT
Statistics
Matches: 307, Mismatches: 19, Indels: 40
0.84 0.05 0.11
Matches are distributed among these distances:
56 1 0.00
57 63 0.21
58 36 0.12
59 25 0.08
60 75 0.24
61 20 0.07
62 62 0.20
63 7 0.02
65 18 0.06
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCAA
Found at i:243423 original size:122 final size:120
Alignment explanation
Indices: 243269--243673 Score: 605
Period size: 122 Copynumber: 3.4 Consensus size: 120
243259 TCTTATGTAG
243269 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTCGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTT-GATTTT-AAGGAAA
243334 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
64 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
* *
243391 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAAGTCCTTTTTTTGAAAATTT-ACTTTTAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-T-ATTTTTTTGGAAATTTGA-TTTTAAGGA
243454 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
62 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
*
243513 GGAAAATTGATACTCTCAACTTTTCCCT-AAAATA-TTTTTTGGAAATTTTGATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAA-TTTGA-TTTTAAGGAAA
* *
243576 ATTGATACTTTCAACTTTTCCTCAAAAAGTCTTTTTT-GAAATTTA----T-TTTTAA
64 ATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTTTCTTTTAA
*
243628 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAA
243674 TTTTTTATTT
Statistics
Matches: 263, Mismatches: 10, Indels: 25
0.88 0.03 0.08
Matches are distributed among these distances:
115 32 0.12
116 7 0.03
117 10 0.04
118 10 0.04
119 3 0.01
120 48 0.18
121 14 0.05
122 117 0.44
123 8 0.03
124 14 0.05
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTGATTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
Found at i:243730 original size:25 final size:23
Alignment explanation
Indices: 243701--243782 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 23
243691 AAGAAAATAG
243701 AATAATAAAACAAAAAATAAATAAA
1 AATAA-AAAA-AAAAAATAAATAAA
* * *
243726 AATAAATAAATAAAATAAAGAAA
1 AATAAAAAAAAAAAATAAATAAA
*
243749 AGTAAAAATATAAAAAATAAAATAAA
1 AATAAAAA-A-AAAAAAT-AAATAAA
*
243775 GATAAAAA
1 AATAAAAA
243783 GAATATTAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
23 18 0.40
24 4 0.09
25 11 0.24
26 12 0.27
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (23 bp):
AATAAAAAAAAAAAATAAATAAA
Found at i:243734 original size:14 final size:13
Alignment explanation
Indices: 243689--243774 Score: 59
Period size: 14 Copynumber: 6.3 Consensus size: 13
243679 TATTTTTATT
*
243689 TAAAGAAAATAGAA
1 TAAA-AAAATAAAA
* *
243703 TAATAAAA-CAAA
1 TAAAAAAATAAAA
*
243715 -AAATAAATAAAAA
1 TAAAAAAAT-AAAA
*
243728 TAAATAAATAAAA
1 TAAAAAAATAAAA
243741 TAAAGAAAAGTAAAAA
1 TAAA-AAAA-T-AAAA
243757 TATAAAAAATAAAA
1 TA-AAAAAATAAAA
243771 TAAA
1 TAAA
243775 GATAAAAAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
11 5 0.09
12 2 0.03
13 17 0.29
14 20 0.34
15 2 0.03
16 10 0.17
17 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:243771 original size:30 final size:30
Alignment explanation
Indices: 243694--243780 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
243684 TTATTTAAAG
* * * *
243694 AAAATAGAATAATAAAACAAAAAATAAATA
1 AAAATAAAAAAATAAAATAAAGAATAAATA
* *
243724 AAAATAAATAAATAAAATAAAGAA-AAGTA
1 AAAATAAAAAAATAAAATAAAGAATAAATA
243753 AAAATATAAAAAATAAAATAAAG-ATAAA
1 AAAATA-AAAAAATAAAATAAAGAATAAA
243781 AAGAATATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
29 11 0.23
30 36 0.77
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (30 bp):
AAAATAAAAAAATAAAATAAAGAATAAATA
Found at i:243779 original size:18 final size:17
Alignment explanation
Indices: 243712--243782 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 17
243702 ATAATAAAAC
*
243712 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAGAT
243729 AAATAAATAAAATAAAG--
1 AAA-AAAT-AAATAAAGAT
* *
243746 -AAAAGT-AA-AAATAT
1 AAAAAATAAATAAAGAT
243760 AAAAAATAAAATAAAGAT
1 AAAAAAT-AAATAAAGAT
243778 AAAAA
1 AAAAA
243783 GAATATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
15 8 0.20
16 2 0.05
17 5 0.12
18 14 0.34
19 7 0.17
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAAAATAAATAAAGAT
Found at i:243793 original size:27 final size:28
Alignment explanation
Indices: 243723--243796 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 28
243713 AAAAATAAAT
*
243723 AAAAATAAATAAATAAAATAAAGAAAAG
1 AAAAATATATAAATAAAATAAAGAAAAG
*
243751 TAAAAATATAAAAAATAAAATAAAGATAAA-
1 -AAAAATAT-ATAAATAAAATAAAGA-AAAG
*
243781 AAGAATAT-TAAATAAA
1 AAAAATATATAAATAAA
243797 CCTAATCTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 7 0.18
29 14 0.36
30 15 0.38
31 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (28 bp):
AAAAATATATAAATAAAATAAAGAAAAG
Found at i:244736 original size:30 final size:30
Alignment explanation
Indices: 244695--244789 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
244685 AATGAACATA
244695 AAAAAATAATAGATA-ATTAGAACAGATAAAT
1 AAAAAATAATAGATATATTA-AA-AGATAAAT
* *
244726 AAAAAA-AATAGATATATTATAGGATAAAT
1 AAAAAATAATAGATATATTAAAAGATAAAT
* *
244755 AAAAAATAACAGATATA-TAATTAGATAAAT
1 AAAAAATAATAGATATATTAA-AAGATAAAT
244785 AAAAA
1 AAAAA
244790 TGCAAAAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 15 0.27
30 30 0.55
31 10 0.18
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.24
Consensus pattern (30 bp):
AAAAAATAATAGATATATTAAAAGATAAAT
Found at i:244836 original size:14 final size:14
Alignment explanation
Indices: 244800--244866 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
244790 TGCAAAAATA
244800 AATAA-AATATAA-
1 AATAATAATATAAT
*
244812 AAAAAT-A-ATAAT
1 AATAATAATATAAT
244824 AATAATAATATAAT
1 AATAATAATATAAT
244838 AATAA-ATATATAACT
1 AATAATA-ATATAA-T
244853 ATATAAATAATATA
1 A-AT-AATAATATA
244867 CATATAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
11 4 0.09
12 10 0.23
13 2 0.05
14 16 0.36
15 2 0.05
16 2 0.05
17 7 0.16
18 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (14 bp):
AATAATAATATAAT
Found at i:245040 original size:20 final size:21
Alignment explanation
Indices: 245017--245057 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
245007 GGCCTTACCC
245017 ATTTGGGCCAGG-CCCAATTG
1 ATTTGGGCCAGGACCCAATTG
*
245037 ATTTGGGCCTGGACCCAATTG
1 ATTTGGGCCAGGACCCAATTG
245058 GGTGTCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (21 bp):
ATTTGGGCCAGGACCCAATTG
Found at i:246352 original size:26 final size:26
Alignment explanation
Indices: 246274--246352 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
246264 GTTGACTTAG
*
246274 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
246300 ACATACGGAGTTCATTACCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
246326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
246352 G
1 G
246353 ATCGGACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:247792 original size:903 final size:899
Alignment explanation
Indices: 245339--247830 Score: 3277
Period size: 924 Copynumber: 2.7 Consensus size: 899
245329 CCCGGTCGCC
* * ** * *
245339 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGGATACCGAGTTCATTCCAAGTCTAAGCACACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCCAAGTCTAAGCATACA
** * * * * *
245404 GAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTTCGGCCGCACATGCTAGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
245469 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * *
245534 TGGCGGCATTGTTGTTCCGGCGATCGGGGGGGCCGGGAGGGTGCGCGCACATAATGTGCGATGGG
196 -GGAGGCATTG-GGTTCCGGCGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGG
*
245599 TGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
258 TGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
245664 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
245729 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGC
388 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGC
* * * *
245794 CAACAAAAATACAAGGATCACTTCTTCCAAGTTT-GGGCCAAAACT-CATTCTGAAAAAAATTTA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTA
* * * * *
245857 AAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATG
517 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
245922 AAACTTCGAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCA
582 AAACTTC-AGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATTGGCA
* *
245987 TGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGGCTTGCGCATCCC
645 TGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTACGCATCCC
* * * * * *
246052 GTCTTTCTGGCCGATGTTGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGC
710 ATCTTTCTGGCAGACGTAGTGCACGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAAGC
** * * * **
246117 ATACGGAGTTTTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGGTAGCAAGATCGACAGC
775 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAACAAGGGTTACGACAGCAAGATCGACAGC
** * *
246182 ACGCAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAG
840 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
246242 CACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAACATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT----A---CA----AA--CT-----T-C-
* * *
246307 GAGTTCATTACCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
46 -A-TTC----CAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
246372 TGCGGCAGCACATGCTGGGCTCGGG-ATGTGCTGGTG-TCACATTTTTCTTCACCGGGGCACCAT
105 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCATCGGGGCACCAT
* * * * *
246435 CACCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTGGGGCTCCGGCAATCGGGCGGGCGGGGG
169 CGCCGGAGCATCGTCGGAGAACCTGA-CGGAGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGG
* *
246500 GGTGTGCACGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTCGCCCCCTATCTCT
232 GGTGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCT
*
246565 CATCAAACCT------CTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
295 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
246624 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGA
360 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
246689 GTTTTTAACTGAATTTTTTTGTGCATGG-CAA-ATAAAATACAAGGATCATGTCCACCAAGTTTG
425 GTTTTTAGCTGAATTTTTTTGTGCA-GGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTG
* * * ** * *
246752 GGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCGCAAACCAAAAAAAGTTTCAAAAATTGTA
488 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* *
246817 AAAAATAGAAAACGAGTCATCTTGCCAAGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
553 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA-GTGAAGGCTTAAGGGACCATTGTATGA
* * *
246882 ATTTACAAGCCATCAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
617 ATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACC
* *
246947 ACCCTATCGATCCACGGCTTACGCATCCTATCTCTT-TGGCATACGTAGTGCACGCCTGCCCGCC
681 ACCCTATCGATCCACGGCTTACGCATCCCATCT-TTCTGGCAGACGTAGTGCACGCCTGCCCGCC
* * * *
247011 CGCCCGCTTGTTTCGTTGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-A
745 CGCCCGCTCGTTTCGTCGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * ** * * *
247075 AATAGAGGGTTGCGACAGCAGGATCGGTAGCACGTAGAGGTGGACCCGATCGATCCCCGGCTTGC
810 AACA-AGGGTTACGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
247140 TCATCCTGCCCCTCTGGCCGGCTGAG
874 GCATCCCGCCCCTCTGGCCGGCTGAG
* * *
247166 CGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAAACTTCATTCCTAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCCAAGTCTAAGCATACA
* * * * * *
247231 GAGTTCATTCTCAATCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
247296 ATGTGCTGGCGCTGCAGTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAT
131 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-
* *
247361 CGGTGGCATTGGGATTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
195 CGGAGGCATTGGG-TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
247426 GCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
259 GCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
247491 AAAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
247556 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTTGCAGGC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAGGC
*
247621 CAACAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * *
247685 AAAATCCCAAACCGTAAAAAGTTTCAACAATCGTGAAAAATAAAAAACGAGTCATTTTGCCATGA
518 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
*
247750 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCAA
583 AACTTCA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAATGGCATTGGCAT
247815 GCAGAAATATGAAGAT
646 GCAGAAATATGAAGAT
247831 CCCGGCTTGC
Statistics
Matches: 1375, Mismatches: 162, Indels: 104
0.84 0.10 0.06
Matches are distributed among these distances:
897 63 0.05
898 74 0.05
899 88 0.06
900 1 0.00
902 4 0.00
903 330 0.24
904 20 0.01
905 2 0.00
906 1 0.00
907 1 0.00
910 1 0.00
911 2 0.00
913 2 0.00
914 1 0.00
916 1 0.00
917 2 0.00
920 1 0.00
921 1 0.00
922 2 0.00
923 165 0.12
924 376 0.27
925 12 0.01
927 6 0.00
928 85 0.06
929 134 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCCAAGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
GGAGGCATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCATGCAGA
AATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTACGCATCCCATCTTT
CTGGCAGACGTAGTGCACGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGAAACAAGGGTTACGACAGCAAGATCGACAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:248802 original size:26 final size:26
Alignment explanation
Indices: 248765--248817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
248755 GTTGACTTAG
248765 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
248791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
248817 G
1 G
248818 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:249463 original size:469 final size:468
Alignment explanation
Indices: 248586--249474 Score: 1253
Period size: 469 Copynumber: 1.9 Consensus size: 468
248576 ACCCGCCCGC
* * * *
248586 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCACTCTCAGTATAAGATCAGACCAGATCAAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCACTCCCAATATAAGATCAGACCAGACCAAGA
* * *
248651 GTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTG
66 GTTGCGACAGCAGGATCGACAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* *
248716 CCCCTCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
131 CCCCTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
* * * *
248781 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAACGGTTGCGGTAGC
196 CCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCAAACCAACGGTTACGGCAGC
* * ** * * *
248846 ACATGCTGGGCTCGGGCATGTGCTGGCGCTGCAGTTTTCTTCGTTGGGGCACCATCGTCGGAGCA
261 ACATGCTAGGCTCAGGCATGTGCTGGCGCCACAGTTTTCCTCGTCGGGGCACCATCATCGGAGCA
* ** * *
248911 TCACCGGAGAACCTGATCGACGGCATTGGGATTCTGGTGATCGGAGGGGCCGGGGGGTGTGCGCA
326 TCACCGGAGAACCTGACCGACGGCATTGGGATTCTGACGATCGGAGGGGCCGGGGAGTGTGCACA
248976 CATGATGTGAGATGGGTGCTGGTACTTGGCACCCTATCCCGTCTCTCTGGTCGACGTAGTGCCCC
391 CATGATGTGAGATGGGTGCTGGTACTTGGCACCCTATCCCGTCTCTCTGGTCGACGTAGTGCCCC
249041 CCCGTCCGCTCGT
456 CCCGTCCGCTCGT
* * * * * * **
249054 TCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCAAGA
1 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCACTCCCAATATAAGATCAGACCAGACCAAGA
* * *
249119 GTTGTGGCAGCAGGATCGACAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGCAT-CTC
66 GTTGCGACAGCAGGATCGACAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCT-
* ** * *
249183 GCCCCTTTGGTCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
130 GCCCC-TCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* * * *
249248 TTCCCAGTCTAAGCATACTGAGTTCATTCACAGTCTAAGATTGGACCAAACCGAGGGTTACGGCA
194 TTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCAAACCAACGGTTACGGCA
* *
249313 GCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCCTCGTCGGGGCACCATCATCGGAG
259 GCACATGCTAGGCTCAGGCATGTGCTGGCGCCACAGTTTTCCTCGTCGGGGCACCATCATCGGAG
** * *
249378 CATCGTCGGAGAACCTGACCTACGGCATTGGGGTTC-GACGATC-GAGGGTGCCGGGGTAGTGTG
324 CATCACCGGAGAACCTGACCGACGGCATTGGGATTCTGACGATCGGAGGG-GCCGGGG-AGTGTG
*
249441 CACACATGATGTGTGATGGGTGCTGGTACTTGGC
387 CACACATGATGTGAGATGGGTGCTGGTACTTGGC
249475 CCTTATATTA
Statistics
Matches: 365, Mismatches: 52, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
467 7 0.02
468 125 0.34
469 233 0.64
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (468 bp):
TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCACTCCCAATATAAGATCAGACCAGACCAAGA
GTTGCGACAGCAGGATCGACAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCTG
CCCCTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCAAACCAACGGTTACGGCAGC
ACATGCTAGGCTCAGGCATGTGCTGGCGCCACAGTTTTCCTCGTCGGGGCACCATCATCGGAGCA
TCACCGGAGAACCTGACCGACGGCATTGGGATTCTGACGATCGGAGGGGCCGGGGAGTGTGCACA
CATGATGTGAGATGGGTGCTGGTACTTGGCACCCTATCCCGTCTCTCTGGTCGACGTAGTGCCCC
CCCGTCCGCTCGT
Found at i:251070 original size:26 final size:26
Alignment explanation
Indices: 251040--251092 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
251030 GTTGACTTAG
251040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
251066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
251092 G
1 G
251093 ACCCGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:251522 original size:898 final size:899
Alignment explanation
Indices: 249011--252862 Score: 5364
Period size: 899 Copynumber: 4.3 Consensus size: 899
249001 TTGGCACCCT
* * * * * *
249011 ATCCCGTCTCTCTGGTCGACGTAGTGCCCCCCCGTCCGCTCGTTCGTTTCGTCGGTTGGCTTAGG
1 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
249076 TATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCAAGAGTTGTGGCAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * * * * * *
249141 CACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTTTGGTCAGCTGAGCACC
131 CACGTAGAGG-GGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
249206 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACTGAGT
195 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
249271 TCATTCACAGTCTAAGATTGGACCAAACCGAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGT
260 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGT
* * *
249336 GCTGGTGCCACATTTTTCCTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCTAC
325 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
* * * *
249401 GGCATTGGGGTT-CGACGATCGAGGGTGCCGGGGTA-GTGTGCACACATGATGTGTGATGGGTGC
390 GGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGTGCGATGGGTGC
* *
249464 TGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
455 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
249529 AGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
520 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* *
249594 TTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTGTTTTTGTGCATGCCAA
585 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAA
* **
249659 CAAAAATACAAGGATCACT-TTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAAAATTTTAAAA
649 CAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * ** ** * *
249723 AATCTCGAGCCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAA
713 AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* * * **
249788 CTTCACGTCAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGTACGT
778 CTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
249853 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
843 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
*
249910 ATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCCCACTCGTTTCGTCGGTT
1 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCG----CTCGTTTCGTCGGTT
* * *
249975 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAGAGTT-CTGGCAACA
58 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGC-GGCAGCA
* * * * * * *
250038 GGATCGGCAGAATGCAGAGGGGGACCCGGCCGATCCCCGGGTTGCGCATCTCGCCCCTCTGGCTG
121 GGATCGGCAGCACGTAGA-GGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
250103 ACTGAGTGCCCGCACGCTTGTTTCGCGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAG
185 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * **
250168 CATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTACCC
250 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGC
* *
250233 TC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
315 TCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
250297 ACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGT
379 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGT
* ** * *
250362 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGATAACCCA
444 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
250427 TACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAA
509 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
250492 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
574 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * ** *
250557 GTGCACGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAGCCTTTCGAAAA
638 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
250622 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC-TCGAAAAATAGAAAACGAGTCATC
703 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT-GAAAAATAGAAAACGAGTCATC
250686 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
767 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
250751 CATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGACTTG
832 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
250816 CGC
897 CGC
** * * *
250819 ATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCTCGATTCATCGGTTGGCTTAGG
1 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
250884 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCA-CAGGATCGCCAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
250948 CACGTAGAGGGGACCCGGCCGATCCTCATCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
131 CACGTAGAGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
251013 GAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
196 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
251078 CATTCCCAGTCTAAGACCCGACCGGACCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCATGTG
261 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTG
* * * *
251143 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCATCGGAGAAACTGACCGACG
326 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * * *
251208 GCATTGGGGTTCCAACGATCGGGGGGGCCTGGGG-GGTGTGCGCACATGATGTACGATGGGTGCT
391 GCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
251272 GGTACTTGGCCCTTATATTTGCCCCCTATCCTTAATCAAACCTCGAGAACTCACCCCCCCTTAAA
456 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
251337 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
521 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * *
251402 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATGTTTTTTTGCATGCCAAA
586 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAC
* * *
251467 AAAAATACAAGGATCTTTTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
650 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** ** * * *
251532 TCTTGAACCGTAAAAAGTTTCAAAAATCGTGACAAATAGAAAACGAGTCATCTTGCCATGAAATT
715 TCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * *
251597 TCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACACAG
780 TCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
251662 AAATATGAAGATGTGCCTAAATCGACCTACCACCCTATCGATCCATGACTTGCGC
845 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* *
251717 AT-CCGATCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
1 ATCCCG-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
251781 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTACCAGGATCGGCA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * *
251846 GCACGTGGAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGC
130 GCACGTAG-AGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
251911 CCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * * *
251976 TTCACTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTGGTACCACGTGCTAGGCTCAGGCATG
259 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATG
*
252041 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTCGGAGAACCTGACCTG
324 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-G
* * *
252106 -CGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGG-GGTGTGCGCACATTATATGCGATGGGT
388 ACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGTGCGATGGGT
* * *
252168 GCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
453 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
252233 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAATGGGAACAC
518 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
252298 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGCACATGC
583 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG--CATGC
* * * *
252362 CAACAAAAATACAAGGATGACGTCTACCAGGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAA
646 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
252427 AAAATCCTGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGA
711 AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * *
252492 AACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
776 AACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
252557 ACAG-AATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACGGCTTGCGC
841 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * * * * * *
252615 ATCCCGTCTCTCTGGTCGGTGTAGTGCCAG-ACTCCCGCTCACTCGTTTTGTCGGATGGCTTAGG
1 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
252679 CATACTGAGTTCATTGCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAGGATCAGCAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
252744 CACGTAGAGGGGGACCCAGCC-AT-CCCTGCCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
131 CACGTAGA-GGGGACCCGGCCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * **
252807 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATGCATAGTTCATTCCCAGTCTAAG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
252863 ATCGAACCAG
Statistics
Matches: 2633, Mismatches: 289, Indels: 65
0.88 0.10 0.02
Matches are distributed among these distances:
895 4 0.00
896 85 0.03
897 104 0.04
898 609 0.23
899 686 0.26
900 258 0.10
901 67 0.03
902 2 0.00
903 9 0.00
905 10 0.00
906 1 0.00
907 316 0.12
908 26 0.01
909 456 0.17
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (899 bp):
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGTAGAGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTG
CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
Found at i:251977 original size:26 final size:26
Alignment explanation
Indices: 251940--251992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
251930 GTTGACTTAG
* * *
251940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
251966 GCATACGAAGTTCACTCCCAATCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
251992 G
1 G
251993 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAATCTAA
Found at i:255017 original size:875 final size:856
Alignment explanation
Indices: 252909--255091 Score: 2898
Period size: 870 Copynumber: 2.5 Consensus size: 856
252899 GCTCGAGCAT
*
252909 GTGCTGGT-CTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTTGAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACACCCCC
* *
252973 TTAAAGAGCATTTGAGATGTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAT
66 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
253038 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
131 AC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
253103 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
195 CCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTA
* ** * * * *
253168 AAAAATCTCGAACCGTAAAAACTTTTGAAAATTATGCAAAATGGAAAGCGAGTCATCTTGCCATG
259 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATG
*
253233 AAACTTCACATG-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
324 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
253297 TGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTC
389 TGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
* *
253362 GTCTCTCTGGCTGACGTAGTCCGTTCGTTTCGTCGATTGGCTTAGGCATACAAAGTTCATTCCCA
454 GTCTCTCTGGCCGACGTAGTCCGTTCGTTTCGTCGATTGGCTTAGGCAAACAAAGTTCATTCCCA
* * * * * *
253427 GTCTAAGTTCAGACCGGATCGAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGTACCCGG
519 GTCTAAGATCAAACCGGACCGAGGGTTACGACAGCAGGATAGACAACACGTAGAGGGGTACCCGG
* * * **
253492 CTTGTGCATCCCACCCCTCTGGCCGCCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGC
584 CTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGC
*
253557 ATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACCG
649 A-AT-G-G-TCATT--CAG-CT----ATACA-AGTTC---TCCAGTCTAAGATCAGACCAGACCG
* * * *
253622 AGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCA
699 AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
*
253687 CCATCGTCGGAGCATCACAGGAGAACCTTACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
764 CCATCGTCGGAGCATCACAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
253752 GGGGGTGTGCGCACATGATGTGCGATGG
829 GGGGGTGTGCGCACATGATGTGCGATGG
*
253780 GTGCTGGTACTTGGCCCTTA-ATTGGCCCCCTATACCGCATCAAACCTCGAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACACCCCC
*
253844 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
66 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
253909 ACTTTTTCAAATGGTCACAAAATC-TGTTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATG
131 ACTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
253973 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCTAAAACA-CCTTTCAAAAAAATTTTA
195 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAA-ATCCTTCCGAAAAAATTTTA
* * * *
254037 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
259 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATG
*
254102 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCA
324 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
254167 TGTGGAAATATGAATATTTACCCAAACGCACCTACCACTCTATCGATCCATGGCTTGCGCATCCC
389 TGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
* *
254232 GTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCCGCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCA
454 GTCTCTCTGGCCGACGTA--G--T--CCGT-------T--C--GTTTCGTCGATTGGCTTAGGCA
** * **
254297 AACAGAA-TTCATTCTGAGTCTAAGATCAAACTGGACCGAGGGTTACGGTAGCAGGATCAG-CAA
502 AACA-AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGCAGGAT-AGACAA
* * *
254360 CACGTAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCACCCTTCTGGTCGACTGAGCACC
565 CACGTAGA---GG----GG----TACCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACC
*
254425 CACACGCTCGTTTCGTGGGTTGACTTAGGC-AT-G-CA-T-AG-T-T-C-A-TTC-CCAGTCTAA
619 CACACGCTCATTTCGTGGGTTGACTTAGGCAATGGTCATTCAGCTATACAAGTTCTCCAGTCTAA
** * *
254479 GATC-GAACCAGACCGAGGGTTGTGGCA-CACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATT
684 GATCAG-ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
* * *
254542 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGATAACCTGACCGGTGGCATTGGGGTTC
748 TTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACAGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * * *
254606 TGGCTATCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTGTGATGG
812 CGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
254652 GTGCTGGTATTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACACCCCC
* *
254717 TTAAAGAGGATTCGAGATTTTAC-AGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 TTAAAGAGCATTTGAGATTTTACAAG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
254781 CACTTTTTCCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCAT
130 CACTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
254846 GCCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTT
194 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAAATCCTTCCGAAAAAATTTT
*
254911 AAAAAATCTCGAACCGTGAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCAT
258 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCAT
*
254976 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
255041 ACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
388 ATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
255092 CAACTTGCGT
Statistics
Matches: 1160, Mismatches: 109, Indels: 82
0.86 0.08 0.06
Matches are distributed among these distances:
869 90 0.08
870 214 0.18
871 209 0.18
872 98 0.08
873 107 0.09
874 87 0.08
875 189 0.16
876 7 0.01
877 1 0.00
879 1 0.00
880 1 0.00
883 1 0.00
885 2 0.00
887 77 0.07
888 3 0.00
890 3 0.00
891 2 0.00
893 1 0.00
894 2 0.00
896 2 0.00
898 63 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (856 bp):
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
TAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTCCGTTCGTTTCGTCGATTGGCTTAGGCAAACAAAGTTCATTCCCAGT
CTAAGATCAAACCGGACCGAGGGTTACGACAGCAGGATAGACAACACGTAGAGGGGTACCCGGCT
TGCGCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCAA
TGGTCATTCAGCTATACAAGTTCTCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACA
TGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
CAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGG
Found at i:255847 original size:794 final size:793
Alignment explanation
Indices: 254329--255886 Score: 2341
Period size: 794 Copynumber: 2.0 Consensus size: 793
254319 AGATCAAACT
* * *
254329 GGACCGAGGGTTACGGTAGCAGGATCAGCAACACGTAGAGGGGGACCCGGCCAATCCCCGGCTTG
1 GGACCGAGGGTTACGGCAGCAGGATCAGCAACACGTAGAGGGGGACCCGACCAATCCCCGGCTTA
*
254394 CGCATCCCACCCTTCTGGTCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATGC
66 CGCATCCCACCCTTCTGGTCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
254459 ATAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCACACATGCTGGGCTTGAGC
131 AGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGATGTAGCACACATGCTAGGCTCGAGC
* * * * *
254524 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGATAACCTGAC
196 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTAAC
** * * * * * * *
254589 CGGTGGCATTGGGGTTCTGGCTATCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTGTGATGGGT
261 CGACGACATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
254654 GCTGGTATTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
326 GCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
254719 AAAGAGGATTCGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
391 AAAGAGCATTCGAGATTTTACAGCTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
254784 TTTTTCCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCC
456 TTTTTCCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCC
* * *
254849 AAAAAAAATACAAGGATTACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTTAAA
521 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAA
* ** * *
254914 AAATCTCGAACCGTGAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
586 AAATCCCGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * * *
254979 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACG
651 ACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * * *
255044 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGTATGCCGT
716 AAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGAGCCACAACTTGCGTATGCCGT
255109 CTAAGATTGGGCC
781 CTAAGATTGGGCC
* * * * * * * * **
255122 GGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGATGGGGACTCGACCGATCCTTGGCTTA
1 GGACCGAGGGTTACGGCAGCAGGATCAGCAACACGTAGAGGGGGACCCGACCAATCCCCGGCTTA
* * * *
255187 CGCATCTCATCCCTT-TGGTCGACTGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTA
66 CGCATCCCA-CCCTTCTGGTCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * *
255251 CGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGATGTAGCAGCACATGCTAGGCTCGG
130 CAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGATGTAGCA-CACATGCTAGGCTCGA
*
255316 GCATGTG-TGGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCT
194 GCATGTGCT-GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCT
*
255380 AACCGACGACATTGGGGTTCCGACGATCGGGTGGGCAGGGGGGTGTGCGCACATGATGTGCGATG
258 AACCGACGACATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATG
* *
255445 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
323 GGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
*
255510 CTTAAAGAGCATTTGAGATTTTACAAG-TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
388 CTTAAAGAGCATTCGAGATTTTAC-AGCTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* ** * *
255574 ACACTTTTTTCAAATTGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
452 ACACTTTTTCCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCA
*
255639 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACA-CCCTCCGAAAAAATT
517 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCCTCCGAAAAAATT
*
255703 TTAAAAAATCCCGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
581 TTAAAAAATCCCGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* *
255768 ATGAAACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAATAATGGCATTG
646 ATGAAACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
255833 GCACAAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGAGCCAC
711 GCACAAAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGAGCCAC
255887 GGCTTACGCA
Statistics
Matches: 682, Mismatches: 78, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
793 146 0.21
794 533 0.78
795 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (793 bp):
GGACCGAGGGTTACGGCAGCAGGATCAGCAACACGTAGAGGGGGACCCGACCAATCCCCGGCTTA
CGCATCCCACCCTTCTGGTCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGATGTAGCACACATGCTAGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTAAC
CGACGACATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTCGAGATTTTACAGCTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTCCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
ACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
AAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGAGCCACAACTTGCGTATGCCGT
CTAAGATTGGGCC
Found at i:256155 original size:26 final size:26
Alignment explanation
Indices: 256126--256178 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
256116 GTTGACTTAG
*
256126 GCATACGAAGTTCACTCCTAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
* * *
256152 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
256178 G
1 G
256179 ATCGAATAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:257766 original size:883 final size:881
Alignment explanation
Indices: 255253--257767 Score: 3346
Period size: 906 Copynumber: 2.8 Consensus size: 881
255243 TAGGCTTACG
* * * * * *
255253 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGATGTAGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGAACAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * *
255318 ATGTGTGGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTAAC
66 ATGTGT-GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
*
255383 CGACGACATTGGGGTTCCGACGATCGGGTGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGG-GGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
255448 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
255513 AAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
255578 TTTTTTCAAATTGTCA-CAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
324 TTTTTTCAAATGGTCACCAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
255642 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCCTCCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
255707 AAAATCCCGAACCGCAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
453 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
255772 AACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAATAATGGCATTGGCAC
518 AACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCAT
* * *
255837 AAAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGAGCCACGGCTTACGCATCCCA
583 AAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * * *
255902 TCTCTTTGGCCGGTGTAGTGCCCGCCCGCCTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTA
648 TCTCTCTGGCCGGCGTAGT--------G-CT---CG--C--CCGCTCGTTTCGTCGGTTGACTTA
* * * *
255967 GGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGAGGGTTATGGTAGTAGGATCGGC
697 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACC----G-TATGG-AGTAGGA-CGGC
* * * * *
256032 AGCATGTAGAAGGGGACCCTACCGATCTCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGC
755 AGCACGTAGAAGGGGACCCGACCGATCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCAGAGCGC
* * * * * * **
256097 CCGTACGCTGGTTTTGTTGGTTGACTTAGGCATACGAAGTTCACTCCTAGTCTAAGCATATG
820 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGAAGTTCACTCCCAGTCTAAGCATACA
* * * * *
256159 GAGTTCATTCCCAGTCTAAGATC-GAATAGGACTGAGGGTTATGACAGCACATGTTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGAACA-GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * * * * *
256223 CATGTTTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATTGTCGGAGAAACTGA
65 CATG-TGTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
256288 CCGGCGGCATTGGGGTTCCGGCGATTGGCGGGGCTGGGGGGTGTGCGCACATGATGTGCGATTGG
129 CCGACGGCATTGGGGTTCCGACGATCGG-GGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
256353 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCACTTATCAGACCTCT-AGAACTCAC-CCCCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCC
* *
256416 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
256481 ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTTTGCTGAATTTTTTTGTGCAT
322 ACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCAT
* * *
256546 GCCAACAAAAATACAACGATCACGTCTACCAAG-TTTGGGTCCAAAATTCCTTCCGAAAAAA-TT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGG-CCAAAACTCCTTCCGAAAAAATTT
** *
256609 TAAGAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
450 TAA-AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
256674 ATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTG
514 ATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTG
** * * * **
256739 GCATGTAGAAATATGAAGATGTGCCAAAACCCACCTACCGCCCTATCGATCCACAACTTGCGCAT
579 GCATAAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
256804 GCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTT-AGCTTAGGCATACGGAG
644 CCCATCTCTCTGGCCGGCGTAGTGCTCGCCCGCTCGTTTCGTCGGTTGA-CTTAGGCATACGGAG
* * * *
256868 TTCATTCCAAGTCTAAGATCGGACCAAACC-TA-GG-GT-TG-CGGCAGCACGTAGAGGGGGACT
708 TTCATTCCCAGTCTAAGATCGGACCAAACCGTATGGAGTAGGACGGCAGCACGTAGAAGGGGACC
* *
256928 CGGCCGATCCCTGGCTTGCGCATCCCGA-CCCTCTGGTCGGCAGAGCGCCCGCACGCTCGTTTCG
773 CGACCGATCCC-GGCTTGCGCATCCC-ACCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCG
* **
256992 TGGGTTGACTTAGGCACACGGAGTTCTTTCCCAGTCTAAGCATACA
836 TGGGTTGACTTAGGCACACGAAGTTCACTCCCAGTCTAAGCATACA
* * * * *
257038 GAGTTCATTACCAGTTTAAGATCGGACCAGACCGCGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGAACAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* *
257103 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAGCATCGTCGGAGCATCGCCAGAGAACCTGAC
66 ATGTG-TGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* *
257168 CGACGGCATTGGGGTTCCAACGATCGGGGGGCCCGGGAGGGGGGTGTGCGCACATGATGTGAGAT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGG--C---AGGGGGGTGTGCGCACATGATGTGCGAT
257233 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* * *
257298 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTCTTTGAAATGGGG
255 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
257363 ACACTTTTTTCAAATGGTCACCAAATCTTGTTCACTTCAAGTTGTTAGCTGAATTGTTTTGTGCA
320 ACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
257428 TGACAACATAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTTCAAAAAAATTT
385 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTT
*
257493 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
450 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * * *
257558 TGAAACATCACGTGAAGGCTAAAGCGACCATTTTATGAATTTGCAAGCCATAAAAATTGCTTTGG
515 TGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGG
* * *
257623 CATACATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATC
580 CATAAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
257688 CCGTCTCTCTGGCCGGCGTAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
645 CCATCTCTCTGGCCGGCGTAGTGCTCGCCCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTT
257753 CATTCCCAGTCTAAG
710 CATTCCCAGTCTAAG
257768 CATATGGAGT
Statistics
Matches: 1409, Mismatches: 177, Indels: 69
0.85 0.11 0.04
Matches are distributed among these distances:
878 32 0.02
879 211 0.15
880 6 0.00
881 2 0.00
882 1 0.00
883 394 0.28
884 114 0.08
890 57 0.04
892 1 0.00
894 2 0.00
897 1 0.00
898 1 0.00
905 111 0.08
906 473 0.34
907 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GAGTTCATTCCCAGTCTAAGATCGGAACAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
ATGTGTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATAAA
AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
CTCTGGCCGGCGTAGTGCTCGCCCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAAACCGTATGGAGTAGGACGGCAGCACGTAGAAGGGGACCCGACCGAT
CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCACACGAAGTTCACTCCCAGTCTAAGCATACA
Found at i:257777 original size:26 final size:26
Alignment explanation
Indices: 257741--257793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
257731 GTTGACTTAG
*
257741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
257767 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
257793 G
1 G
257794 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:258397 original size:732 final size:735
Alignment explanation
Indices: 256932--258447 Score: 2414
Period size: 732 Copynumber: 2.1 Consensus size: 735
256922 GGGACTCGGC
* * * *
256932 CGATCC-CTGGCTTGCGCATCCCGACCCTCTGGTCGGCAG-AGCGCCCGCACGCTCGTTTCGTGG
1 CGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCACGCTCGTTTCGTGG
* * *
256995 GTTGACTTAGGCACACGGAGTTCTTTCCCAGTCTAAGCATACAGAGTTCATTACCAGTTTAAGAT
64 GTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTACCAATCTAAGAT
* **
257060 CGGACCAGACCGCGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
129 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * *
257125 TTCGTCGGGGCAGCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAACG
194 TTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTAACCGACGGCATTGGGGTTCCAACG
257190 ATCGGGGGGCCCGGGAGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTA
259 ATCGGGGGGCCC-GGAGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTA
* *
257255 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
323 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTT
* *
257320 TACAGGTTTGCTGTCAGTAGCCATTAAAGTCTTTGAAATGGGGACACTTTTTTCAAATGGTCACC
388 TACAGGTTTGCTGGCAGTAGCCATTAAAGTCTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
257385 AAATCTTGTTCACTTCAAGTTGTTAGCTGAATTGTTTTGTGCATGACAACATAAATACAAGGATC
453 AAATCTTGTACACTTCAAGTTGTTAGCTGAATTGTTTTGTGCATGACAACAAAAATACAAGGATC
** * * *
257450 ATGTCTACCAAGTTTTGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
518 ACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
257515 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTAA
583 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTAA
* * * * *
257580 AGCGACCATTTTATGAATTTGCAAGCCATAAAAATTGCTTTGGCATACATAAATATGAAGATGTG
648 AGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTG
*
257645 CCTAAACCCACCTGCCACCCTAT
713 CCTAAACCCACCTACCACCCTAT
*
257668 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCACGCTCGTTTCGTGGGT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCTCGTTTCGTGGGT
* ** *
257733 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCG
66 TGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTACCAATCTAAGATCG
* * * *
257798 GATCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
* * *
257863 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAAGAACCTAACCGGCGGCATTGGGGTTCCGACGA
196 CGTCGGGGCACCATCGCCGGAGCATCGCCAG-AGAACCTAACCGACGGCATTGGGGTTCCAACGA
* *
257928 TCGGGGGG-CC-G-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
260 TCGGGGGGCCCGGAGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATA
257990 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTA
325 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTA
* * *
258055 TAGGTTTGCTGGCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTTACAAA
390 CAGGTTTGCTGGCAGTAGCCATTAAAGTCTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
** * * *
258120 ATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATG-CCACAAAAATACAAGGATCAC
455 ATCTTGTACACTTCAAGTTGTTAGCTGAATTGTTTTGTGCATGACAACAAAAATACAAGGATCAC
* *
258184 ATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
520 ATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
258249 TTTCAAAAATCGTGAAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
585 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTAAAG
258314 CGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCC
650 CGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCC
258379 TAAACCCACCTACCACCCTAT
715 TAAACCCACCTACCACCCTAT
* * *
258400 CGATTCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
258448 CCACCTGCCC
Statistics
Matches: 716, Mismatches: 61, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
732 263 0.37
733 210 0.29
734 1 0.00
735 1 0.00
736 202 0.28
737 39 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (735 bp):
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTACCAATCTAAGATCG
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
CGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTAACCGACGGCATTGGGGTTCCAACGAT
CGGGGGGCCCGGAGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGGCAGTAGCCATTAAAGTCTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCAAGTTGTTAGCTGAATTGTTTTGTGCATGACAACAAAAATACAAGGATCACA
TCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTAAAGC
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTAT
Found at i:262157 original size:26 final size:26
Alignment explanation
Indices: 262121--262170 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
262111 GACTTAGGCT
262121 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
262147 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
262171 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:263058 original size:26 final size:26
Alignment explanation
Indices: 263027--263076 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
263017 GACTTAGGCG
*
263027 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
263053 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
263077 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:263649 original size:903 final size:901
Alignment explanation
Indices: 260512--273533 Score: 16208
Period size: 903 Copynumber: 14.6 Consensus size: 901
260502 ACCTGGCCGG
260512 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
260577 CTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
260642 GTAGCCACTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
260707 GAGTTTTTAGCTGAAATTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTC
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* * *
260772 GGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATG
260 GGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
260837 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
260902 ATTTACAAGCCATAAAAATGG---TGGCACGGAGAAATATGAAGATGTGCCTAAATCCACCTACA
389 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * **
260964 ACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCTTCC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * *
261029 GCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGA
519 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * * *
261094 CCGAGGGTGGCGGCAGCAGGATCGGTAGCACATAGAGTGGGACTCGTTCAATCCCCGGCTTGCGC
584 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * *
261159 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACAGA
649 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
** * ** *
261224 GTTCATTCCCAGTCTAAGCATGTGCAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTG
714 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
261289 CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGT
779 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGC
* * * **
261354 CGAAGCATCGTCGGAGAACCTGACCGGCGCCAATGGGGTTCCGGTGATC-GGGGGGCC
844 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * **
261411 GGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATGTTGGTGCCCTATC
1 GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * **
261476 CATCATCAAATCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
261541 AGTAGCCACTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTA
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
261606 CGAGTTTTTAGCTGAAATTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
261671 CGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCAT
260 -GGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
261736 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
261801 AATTTACAAGCCATAAAAATTGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *** *
261866 CACCCTATCGATCCACGGCTCGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCTATCCGCCCACC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * *
261931 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTATGATTGGACCAG
518 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * ** ** **
261996 ACCAAGGGCTGCGGCAGTAGGATCAACAGCAC-CTAGAGGGGGACCCGACCGATCCCCGGCTTAA
583 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACAC-AGAGGGGGACCCGGTCGATCCCCGGCTTGC
* *
262060 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCTTACG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
262125 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
712 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * * * * *
262190 TGCGGGCAGCACTTGCTAGGCTTGGCCAAGTGCTGATACCGTATTTTTCTTCGTCGAGGCACCAT
777 TGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCAT
* * ** * * *
262255 CGCCGGAGCATCGTCGGATAACCTAACCGGCGATATTAGGTTTCCGACGATCGAGGGGGCC
841 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * *
262316 AGGGGGGTGTGTGCACATGATGTGCGATGGGTACTGGTTCTTGGCCCTTATATTGGCCGCTTATC
1 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
262381 CCTCATCAAACCCCGAGAACTCACACCCCACTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGC
65 CCTCATCAAACCTCGAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
262446 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
262511 TCGAGTTTTTACCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
262576 TAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATTA
259 T-GGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
262641 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
322 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
262706 GAATTTACAAGCCATAAAAATTGCATTGGAAGGTAGAAATATGAAGATGTGCCTAAACCCA-CAA
387 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * * *
262770 CCCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGTCTGCCCA
452 -CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * * *
262835 CCCGCCTACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGGTTGGACA
516 CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * *** *
262900 AGACTGAGGCCTACGGCAGTAGGATCGGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTA
581 AGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * *
262965 CGCATCCCACCCCTCTGGCCAGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCGTAC
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
263030 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGACGG
711 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * * * * * *
263095 TTGTGGTAGCACATGCTAGGCTTGGCCAAGTGCTGGTACCACATTTTTCTTCGTCGAGGCACCAT
776 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCAT
* * * * *
263160 TGCCGGAGCATCGTCGGATAACCTGACCGGCGGTATTAGGGTTCCGACAATCGGGGGGGCC
841 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
263221 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCGCTTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
263286 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
263351 GTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
263416 GAGTTTTTAGCTGAATTTTTTTGCGCTTGCCCACAAAAATACAAGGATCACGTCTATCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
263481 GGACCAAAACACCTTCGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGA-
261 GG-CCAAAACTCCTTCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-AT
263545 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
263610 AATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTACCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
263675 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCTGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * *
263740 CGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGCAGTTCATTCCCAGTCTAAGATCAGA
518 CGCCT----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * *
263805 CCAAACCAAGGGTTGCGGAAGAAAGATCAGCAGCACACAGAAGGGGACCCGGGT-GATCCCTGGC
579 CCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCC-GGTCGATCCCCGGC
** * * * * *
263869 TTGCGCATCTTGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTCATTTCATAGGTTGACTTAGGCA
643 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
263934 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACTGA
708 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * * *
263998 TGGTTACGGTAGCACA-GCTGGGCTCAGGCATGT-C--GTGCTGCATTTTTCTTCACCAAGGCAC
773 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCAC
** * * * * *** *
264059 CA-AACC-GAGCATCGTCAGAG-ACCTAACTGACGGCATTGATTTTCC-ACGAT-TGGGGGGCC
838 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
264118 --GGGGTGCGCGCACATTGATGTAGAC-A-GGAGT-TTCGGTAACTTTTGCCCTTATATTGG---
1 GGGGGGTGTGCGCACA-TGATGT-G-CGATGG-GTGCT-GGT-AC-TTGGCCCTTATATTGGCCC
* ** * * * *
264175 CATCGCCCTCA-AAAACCTCGGGGAACTTCATCAAACACCTTTAAAGACGCACTTTGAGATTTTA
59 CCTATCCCTCATCAAACCTC-GAGAAC-TCA-C--ACCCCCTTAAAGA-GCA-TTTGAGATTTTA
*
264239 CAGGTTTGC-GCTGCAGTAGCCATTAAA-TGTTCTGAAGTGGGGGACACTTTTTTC-AATGGTCA
117 CAGGTTTGCTGC--CAGTAGCCATTAAAGTG-TCTGAAAT-GGGGACACTTTTTTCAAATGGTCA
* ** * * * * *
264301 GCAAAATCTTGTACACTT-GATTTTTTAGCTG-A----TAAG-GCATCCCATC-GAACTGCAAGG
178 -CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
264358 -GCACGTCTACCAAGTTTGGGCAAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CG--
242 ATCACGTCTACCAAGTTTGGGC-CAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCA
* *
264419 TAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-TCGTCTTGCCA-GAAACTTCACGTGAAGCC
305 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
264482 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACACAGAAAAATGAAGAT
370 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* *
264547 GTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
435 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * * *
264612 AGTGCCTGCCCGTCCGCTCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
500 AGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *
264677 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATTGGCAGCACACAGAGGGGGACCCG
565 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCG
** * * * *
264742 ACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTGG
630 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
264807 GTTGACTTAGGCATAC--AG---------AG--T-----T-C--A----ATT-CCAGTCTAAGAT
695 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * **
264846 CGGACCAGACCGGGGGTTGTGGCAGCACATGTTGGGCTTGGCCATGTGCTGGTGCCATATTTTTC
760 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* ** * * * *
264911 TTCG-CTAGGGCACCATCATCGGAGCATCGTCAGAGAACATGACCGGTGGCATTGGAGTTCC-AG
825 TTCGCCGA-GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-
*
264974 TGATC-GGGGGGCC
888 CGATCGGGGGGGCC
* * *
264987 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
265052 CTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
265117 GCAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
265182 GAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACAAAGTATG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * *
265247 GGACAAAAAATCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTATTC-AAAATCTT
261 GG-CCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCAT
*
265311 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
265376 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGGGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
265441 CACCC-ATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * *
265502 C-AC-G-T--TTT-GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAG
518 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * *** *
265561 ATCGAGGGTTGCAGCAGCAGGATCGACAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
583 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * ** ** *
265626 TATCCCACCGCTCTGGCCTACTGAGCGCCCGCACGCTCGTTTAATGGGCTGACTTAGGCATACGG
648 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
265691 AGTTCATTCCCAGTCTAAG-AT-C--AG---A---CCAGACT--GA-CGG---GTA-C---GG-T
713 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* *
265735 -----AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCC-AGGGCACCATC
778 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATC
* * * * * *
265794 ACAGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGTC
842 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
265853 GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCTCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
265918 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * **
265983 GTAGCCACTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
266048 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTC
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* * *
266113 GGGCCAAAATTCCTGCCGAAAAAATTTT-AAAAATCACCCGAACAGCAAAAAGTTTTC-AAAATC
260 GGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAAT--CCCGAACCGCAAAAAG-TTTCAAAAATC
* * * *
266176 GTGGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
321 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
266241 TGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
386 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
266306 ACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG
451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* *
266367 CCCG--T--TCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
516 CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
266428 AGACCGAGGGTTGCGGCAGCAGGATTGGTAGCACACAGAGGGGCACCCGGTCGATCCGCAGCTTC
581 AGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * *
266493 CGCATCTCGCCTCTCTGGCTGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC-T-----T--
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
266550 GG-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
711 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * *
266597 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
776 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCAT
* ** * * * *
266662 CGCTGGAGCATTATCGGAAAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGTCG
841 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * * *
266723 GGAGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTAGTTGGCTCTAATATCGGCCCTCTATC
1 GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
266788 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
266853 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
266918 CGAGTTTTTATCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* **
266981 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCAT
260 -GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
267046 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATA
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
267111 AATTTACAA-CCATAAAAATGGCATTGGCAC-CTAGAAATATGAAGATGTGCCTAAACCCTCCTA
388 AATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
267174 CAACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT----GCCCTTCCGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * *
267235 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCG
517 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * * ** * * *
267300 GACTGAGGATTGTGGCAGTATGATCGACAGCACATAGAAGGGCAACCC-ATCGATCCTCGGCTTC
582 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAG-AGGGGGACCCGGTCGATCCCCGGCTTG
* * * *
267364 CGCATCTCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
267429 GGAGTTC-TGTCCTAGTCTAAGCATACGGAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGG
711 GGAGTTCAT-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * *
267493 GTTGCGGTAGCACATGATGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGAGGCGCAA
775 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCA
* * * *
267558 TCGCCGGAGCATCGTCCGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCAGGGGGGCC
840 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
*
267620 GGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTAT
1 -GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
267685 CCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGC
64 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
267750 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTACAC
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACAC
* *
267815 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTATCAAGT
193 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** ** *
267880 TTGGTGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCAAAACAACAAAAAGTTTCAAAAATT
258 TTGG-GCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * * * *
267945 GTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAATTTCACGTGAAGGCTTAATGGACCACTGTA
321 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * ** *
268010 TGAATTTAAAAGCCATAAAAATGGCATTGCCACATAGAAATATGTAGATGTGCCTAAACCCACCT
386 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
268075 ACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGGCGTAGT--------GCCCG
451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* **
268132 CCCG---G-TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAGT
516 CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * **
268193 AGACTGAGGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGTGACCCGACCGATCCCCGGCTTG
581 AGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * *
268258 CGTATCCTG-CCGTGTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
268322 GAAGTTCATTCCCAGTCTAAGCATACGGA-TATCATTCCCAGTCTACGATCGGACCGGACCGAGG
711 GGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * ** *
268386 GTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA
775 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCA
** * * * *
268451 TCGCCGGAGCATCACCGGAGAACCTTACCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCC
840 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
268513 AGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
268578 CTCATCAAACCTCAAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
268643 GTAGCCATTAAAGTGTCTTAAATGTGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
268708 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTTA-AAAGTTT
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTT
* * * **
268772 GGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCGTACCGCAAAAAGTTTCAAAAATTGT
260 -GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
268837 GAAAAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
268902 AATTTACAAGCCATAAAAATTTCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
268967 CACCCTATCGATCCACGACTTGCACAACCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * *** * * *
269032 CGCCCGCTCGTTTCATTAATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAAC-G
518 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * ** * *
269096 AACCAAGGGTTGCGGTAGTAGGATCGGTAGCATGCAGAGAGGGACCCGGTCGATCCCCGGCTTAC
583 -ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * * * *
269161 GCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATATG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
269226 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
712 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
269291 TGCGGCAGCCCATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC--GG-------
777 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATC
* * * *
269347 G--GTACCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCC
842 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * * *
269405 AGGGGGTGCGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCACTTATTC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
269470 CTCATCAAAGCTCGAGAACTCACACCCCCTTCAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
269535 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
269600 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* **
269664 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATG
260 GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
269729 -AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCGTTGTATAA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** *
269793 ATTTACAAGCCATAAAAATGGCATTGGCACATTGAAATATGAAGATGTGCCTAAACCCACCTACA
389 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
269858 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT----GCCCGCCCGCCT
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * *
269919 GCCTGCTCGTTTCGTCGGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGA
519 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * * * *
269984 CCGAGGGTTGCGACAGTAGGATTGACAGCACACAGAGGGGCAACCGATCAATCCTCGGCTTCCGC
584 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * * * * *
270049 ATCTCGCCCCTCTGGCCAGCTGAGCGGCCGCACACTCGGTTCATGGGTTGACTTAGGCATATGGA
649 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
270114 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
714 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
270179 CGGCAGCAGATGTTGGGCTTC-GGCATGTGCTGGTGCCGCATTTTTCTT-GACCGGGGCGCCATC
779 CGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGAGGCACCATC
* * **
270242 ACCGGAGCATCGTCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAAGGGGGGCC
842 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
270302 GGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATACTGGCCCCCTATC
1 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
270367 CCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
270432 AGTAGCCATTAAAGTGTCTGGAATGGGGACAATTTTTTCAAATGGTTACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
270497 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** **
270562 GGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCAAAACTACAAAAAGTTTCAAAAATCAT
260 -GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* *
270627 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTATA-GGACCACTGTAT
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGTAT
** *
270691 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
270756 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * *
270821 CCGCCCGCTCGTATCGTCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCA
517 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * * * * *
270886 GACTGAGGGTTGAGGTAGCAGGATCAGCAGCACGCAGAGGGTGACTCGATCGATCCCCGGCTTGC
582 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * * *
270951 GCATCCCG-CCGTGTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
271015 GAGTTCACTCCCAGTCTAAGCATACAGA-TATTATTCACAGTCTACGATCGGACCGAACCGAGGG
712 GAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* ** * *
271079 TTGTGATAGCACATGCTGGGCTTGGACATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCAT
776 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCAT
** *
271144 CGCCGGAGCATCACCGGAGAACCTTACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
841 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
271205 AGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
271270 CTCATCAAACCTCAAGCACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
271335 GTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGATCACAAAATATTCTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * **
271400 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* * * **
271465 GGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGTACCGCAAAAAGTTTCAAAAATTGTGA
260 GGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
271530 AAAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** *
271595 TTTACAAGCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
271660 CCCTATCGATCCACGGCTTGCACAACTCGTCTCTCTTGCTGGCGTAGT----GCCCGCCCG--C-
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * *
271718 CC-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAACAGA--ATGA
520 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-G-
* * * * * ** *
271780 ACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGAGGGACCCGGTCGATCCCCAACTTTCG
583 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * * * *
271845 CATCCCTCCCCTCTTGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATATGG
648 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
271910 AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGATT
713 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
271975 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT--
778 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCG
* *
272038 -C---G---C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GTGGGCC
843 CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
272086 AGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
272151 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
272216 GTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** * *
272281 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTTCCAAGTTCG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-T
* ** * * ** *
272346 GGGACAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGAGTAAAAAATCATG
260 GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * * *
272411 AAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAATGGACCGTTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
272476 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACATAAACCCACCAACC
389 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
272541 ACCCTATCGATCCACGACTTGCACATCCCATCTTTCTGGCCGACGTACTGCCCGCCCGTCCGCCT
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-
* * *
272606 TCCCGCCT-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGAC
515 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * ** * *
272670 CAAACCGAGGGTTACGAATAGTAGGATCGGTAGCACACAGAGGGTGACCCGGTCGAT---C--C-
580 CAGACCGAGGGTTGCG-GCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCT
* * *
272729 --C-CA----G---CT-T-----G--GA--------ATGATCGTTTCGTGGGTCGACTTAGGCAT
644 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * ** *
272768 ACGGAATTCATTCCTAGTTTAAGCATACGGAGTTCATTCTCAGTCTAAGAATTAGATCGGACCGA
709 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGA
* * * *
272833 -GGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTTGCCGTATTTTTCTTTGCCTG-GG-
773 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG-TGCCGCATTTTTCTTCGCC-GAGGC
* * * * * * * * *
272895 ACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGTTTCTGGCGA-CCGGGGGGC
836 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
272959 C
901 C
*
272960 GGGTGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
273025 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* ** * *
273089 AGCAGCTTTTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
273154 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * **
273219 GGGGCTAAAACTCTTTCCGAAAGAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCAT
260 -GGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
273284 CAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
273349 AATTTACAAGCCACAAAAACGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
273414 CACCCTATCGATCCATGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTACCGGCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * * *
273479 CGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGCCTAAG
518 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
273534 CATACGGAGT
Statistics
Matches: 10600, Mismatches: 1250, Indels: 574
0.85 0.10 0.05
Matches are distributed among these distances:
847 2 0.00
848 1 0.00
849 1 0.00
850 1 0.00
852 2 0.00
853 6 0.00
855 2 0.00
856 3 0.00
859 2 0.00
860 2 0.00
861 39 0.00
862 150 0.01
863 73 0.01
864 28 0.00
865 43 0.00
866 521 0.05
867 300 0.03
868 141 0.01
869 315 0.03
870 94 0.01
871 447 0.04
872 18 0.00
873 31 0.00
874 419 0.04
875 141 0.01
876 100 0.01
877 4 0.00
878 2 0.00
879 6 0.00
880 3 0.00
881 256 0.02
882 205 0.02
883 39 0.00
884 3 0.00
885 4 0.00
886 440 0.04
887 3 0.00
888 5 0.00
889 3 0.00
890 590 0.06
891 257 0.02
892 315 0.03
893 396 0.04
894 300 0.03
895 74 0.01
896 32 0.00
897 225 0.02
898 436 0.04
899 121 0.01
900 631 0.06
901 333 0.03
902 507 0.05
903 1121 0.11
904 340 0.03
905 206 0.02
906 671 0.06
907 187 0.02
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
GAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCG
GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
Found at i:263742 original size:12 final size:12
Alignment explanation
Indices: 263725--263750 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
263715 CCGAAGTAGT
263725 GCCCGCCTGCCC
1 GCCCGCCTGCCC
263737 GCCCGCCTGCCC
1 GCCCGCCTGCCC
263749 GC
1 GC
263751 TCATTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
GCCCGCCTGCCC
Found at i:263982 original size:25 final size:26
Alignment explanation
Indices: 263931--263982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
263921 GTTGACTTAG
*
263931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
263957 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
263982 G
1 G
263983 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:267472 original size:26 final size:26
Alignment explanation
Indices: 267423--267475 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
267413 GTTGACTTAG
*
267423 GCATACGGAGTTCTGTCCTAGTCTAA
1 GCATACGGAGTTCTGTCCCAGTCTAA
*
267449 GCATACGGAGTTCAT-TCCCGGTCTAA
1 GCATACGGAGTTC-TGTCCCAGTCTAA
267475 G
1 G
267476 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCTGTCCCAGTCTAA
Found at i:268346 original size:26 final size:26
Alignment explanation
Indices: 268316--268366 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
268306 GTTGACTTAG
268316 GCATACGAAGT-TCATTCCCAGTCTAA
1 GCATACGAA-TATCATTCCCAGTCTAA
*
268342 GCATACGGATATCATTCCCAGTCTA
1 GCATACGAATATCATTCCCAGTCTA
268367 CGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAATATCATTCCCAGTCTAA
Found at i:271387 original size:902 final size:896
Alignment explanation
Indices: 266552--273533 Score: 9074
Period size: 902 Copynumber: 7.8 Consensus size: 896
266542 GTTGACTTGG
* * *
266552 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
266617 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTATCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * **
266682 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGTCGGGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAG-GGGGTGTGCGCACATGATGTG
* * * * * * *
266747 CGATGGGTGCAGGTAGTTGGCTCTAATATCGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
266812 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
266877 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
266941 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
267005 ATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATC-CAAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
267070 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAA-CCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
267134 TTGGCAC-CTAGAAATATGAAGATGTGCCTAAACCCTCCTACAACCCTATCGATCCACGGCTTGC
584 TTGGCACAC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
267198 GCATCCTGTCTCTCTGGCCGACGTAGTGCCCTTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
267263 GGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGATTGTGGCAGTATGATCGAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * *
267328 AGCACATAGAAGGGCAACCC-ATCGATCCTCGGCTTCCGCATCTCAC-CCCTCTGGCCAGCTGAG
778 AGCACACAG-AGGG-GACCCGATCGATCCCCGGCTTCCGCATC-C-CGCCCTCTGGCCGGCTGAG
* * *
267391 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-TGTCCTAGTCTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCCAGTCTAA
* * * *
267449 GCATACGGAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
267514 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGAGGCGCAATCGCCGGAGCATCGTCC-GAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-ACCGGAG
* * * *
267578 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCAGGGGGGCCGGGAGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AG-GGGGTGTGCGCACATGATG
* *
267643 TGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
267708 ACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
267773 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTACACTTCGAGTTTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
267838 TTGTGCATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGTGCCAAAAATCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** *
267903 AAAATTTAAAAAAATCCAAAACAACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTAGT
452 AAAATTTTAAAAAATCCAAAAC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
267968 CTTGCCATGAAATTTCACGTGAAGGCTTAATGGACCACTGTATGAATTTAAAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
268033 GCATTGCCACATAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
268098 GTGCATCCCATCTCTCTGGCCGGCGTAGT----GCCCGCCCG---G-TCGTTTCGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
268155 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAGTAGACTGAGGGTTGCGGCAGCAAGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCG
* * * * * * *
268220 ACAGCACACAGAGGGTGACCCGACCGATCCCCGGCTTGCGTATCCTGCCGTGTGGCCGGCTGAGC
776 GCAGCACACAGAGGG-GACCCGATCGATCCCCGGCTTCCGCATCCCGCCCTCTGGCCGGCTGAGC
*
268285 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
268342 GCATACGGA-TATCATTCCCAGTCTACGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
268406 GCTCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * *
268471 AACCTTACCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * *
268536 CGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGCACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
268601 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
268666 GTGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
268731 TGCATGCCAAAAAAAATACAAGGATCACATCTTA-AAAGTTTGGGGTCAAAACTCCTTCCGAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * ** * *
268795 AATTTTAAAAAATACCGTACCGCAAAAAGTTTCAAAAATTGTGAAAAAAACAAAACGAGTCGTCT
454 AATTTTAAAAAAT-CCAAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
268860 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
268925 ATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ***
268990 ACAACCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTAATTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
269055 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAAC-GAACCAAGGGTTGCGGTAGTAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGA
* ** * * * *
269119 TCGGTAGCATGCAGAGAGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGACT
773 TCGGCAGCACACAGAG-GGGACCCGATCGATCCCCGGCTTCCGCATCCC-GCCCTCTGGCCGGCT
* * * *
269184 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATATGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
269245 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
269310 GTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGTACCAT---C---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
269364 ACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCAGGGGGTGCGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * * * * *
269429 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCACTTATTCCTCATCAAAGCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
269494 CCCCCTTCAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
269559 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
269624 GCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
269688 TTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAAT-CCAAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
269752 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
269817 TGGCACATTGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
269882 ATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
269947 TATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATTGACAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * * *
270012 CACACAGAGGGGCAACCGATCAATCCTCGGCTTCCGCATCTCGCCCCTCTGGCCAGCTGAGCGGC
780 CACACAGAGGGG-ACCCGATCGATCCCCGGCTTCCGCATCCCG-CCCTCTGGCCGGCTGAGCGCC
* * *
270077 CGCACACTCGGTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
270131 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
270196 CTTC-GGCATGTGCTGGTGCCGCATTTTTCTTGACCGGGGCGCCATCACCGGAGCATCGTCC-GA
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-ACCGGA
** * *
270259 GAACCTGACCGGCGGCATTGGGGTTCCGACGATAAGGGGGGCCGGGGGGGTGTGCGGACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATG
* * *
270324 TGCGATGGGTGCTGTTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
270389 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
270454 ATGGGGACAATTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
270519 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
270584 AAATTTAAAAAAATCCAAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCAAAACT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
270649 TTGCCATGAAATTTCACGTGAAGGCTTATA-GGACCACTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
270713 GCATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
270778 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTATCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
270843 GGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGAGGTAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGG
* * * * * *
270908 ATCAGCAGCACGCAGAGGGTGACTCGATCGATCCCCGGCTTGCGCATCCCGCCGTGTGGCCGGCT
772 ATCGGCAGCACACAGAGGG-GACCCGATCGATCCCCGGCTTCCGCATCCCGCCCTCTGGCCGGCT
* *
270973 GAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
271034 GCATACAGA-TATTATTCACAGTCTACGATCGGACCGAACCGAGGGTTGTGATAGCACATGCTGG
1 GCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
271098 GCTTGGACATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
*
271163 AACCTTACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * *
271228 CGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGCACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
271293 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
271358 GGGGACATTTTTTTCAAATGATCACAAAATATTCTACACTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
271423 TGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * ** * *
271487 ATTTTAAAAAATCTCGTACCGCAAAAAGTTTCAAAAATTGTGAAAAAAACAAAACGAGTCGTCTT
455 ATTTTAAAAAATC-CAAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * **
271552 GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATTTCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
271617 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
271682 CAACTCGTCTCTCTTGCTGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
271743 GCATACGGAGTTCATTCCCAATCTAAGAACAGA--ATGAACCAAGGGTTGCGGCAGCAGGATCGG
714 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-G-ACCGAGGGTTGCGGCAGTAGGATCGG
* * * ** * * * *
271806 TAGCACGCAGAGAGGGACCCGGTCGATCCCCAACTTTCGCATCCCTCCCCTCTTGCTGGCTGAGC
777 CAGCACACAGAG-GGGACCCGATCGATCCCCGGCTTCCGCATCCC-GCCCTCTGGCCGGCTGAGC
* * *
271871 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATATGGAGTTCATTCTCAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
271928 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGATTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
271993 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT---C---G-----CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
272047 ACCTGACCGACGGCATTGGGGTTCCGACGATC--GTGGGCCAGGGGGTGCGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* *
272110 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
272175 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
272240 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * * ** *
272305 GCATGCCAACAAAAATACAAGGATCATATCTTCCAAGTTCGGGGACAAAAAGCCTTCCAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * ** * *
272370 TTTTAAAAAATCCTGAACCGCAAAAAGAGTAAAAAATCATGAAAAATAGAAAACGAGTCGTCCTG
456 TTTTAAAAAATCC-AAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
272435 CCATGAAACTTCACATGAAGGCTTAATGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * * *
272500 TGGCATGCAGAAATATGAAGATGTACATAAACCCACCAACCACCCTATCGATCCACGACTTGCAC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
272565 ATCCCATCTTTCTGGCCGACGTACTGCCCGCCCGTCCGCCTTCCCGCCTCTCGTTTCGTCGGTTG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCG---CTCGTTTCGTCGGTTG
* * * * **
272630 GCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGAATAGTAGG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-GCAGTAGG
* *
272695 ATCGGTAGCACACAGA--GG----G-T-GA--CCCGG--T-CG-ATCCC-CAGCT-T-----G--
772 ATCGGCAGCACACAGAGGGGACCCGATCGATCCCCGGCTTCCGCATCCCGC-CCTCTGGCCGGCT
* * * * * * *
272737 GA--------ATGATCGTTTCGTGGGTCGACTTAGGCATACGGAATTCATTCCTAGTTTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
272790 GCATACGGAGTTCATTCTCAGTCTAAGAATTAGATCGGACCGA-GGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * * * *
272854 GCTCGAGCATGTGCTGGTTGCCGTATTTTTCTTTGCCTGGG-ACCATCGTCAGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGG-TGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGA
* * * * * * *
272918 GAACCTGACCGGCGACTTTGGGTTTCTGGCGA-CCGGGGGGCCGGGTGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGG-GGGTGTGCGCACATGATG
* **
272982 TGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* ** * *
273047 ACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGCAGCTTTTAAAATGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
273111 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
273176 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** * *
273241 GAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTTGAAAATCATCAAAAATACAAAACGAGTCGT
453 AAATTTTAAAAAATC-CAAAAC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
273305 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAACG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
273370 GCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
273434 TGTGCATCCTGTCTCTCTGGCCGACGTAGTACCGGCCCGCCCGCCCGCCCGCTCGTTTCGTGGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
273499 TGACTTAGGCATACGGAGTTCATTCCTAGCCTAAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
273534 CATACGGAGT
Statistics
Matches: 5352, Mismatches: 625, Indels: 242
0.86 0.10 0.04
Matches are distributed among these distances:
862 106 0.02
863 31 0.01
865 1 0.00
868 1 0.00
870 2 0.00
871 44 0.01
872 2 0.00
873 31 0.01
874 355 0.07
875 107 0.02
876 1 0.00
877 2 0.00
878 11 0.00
879 5 0.00
880 2 0.00
881 261 0.05
882 198 0.04
883 40 0.01
885 5 0.00
886 285 0.05
887 4 0.00
888 2 0.00
889 3 0.00
890 437 0.08
891 247 0.05
892 279 0.05
893 404 0.08
894 283 0.05
895 4 0.00
897 189 0.04
898 435 0.08
899 80 0.01
900 212 0.04
901 318 0.06
902 461 0.09
903 378 0.07
904 125 0.02
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCAAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
ACACAGAGGGGACCCGATCGATCCCCGGCTTCCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:272816 original size:26 final size:26
Alignment explanation
Indices: 272764--272816 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
272754 GTCGACTTAG
*
272764 GCATACGGAATTCATTCCTAGTTTAA
1 GCATACGGAATTCATTCCTAGTCTAA
*
272790 GCATACGGAGTTCATT-CTCAGTCTAA
1 GCATACGGAATTCATTCCT-AGTCTAA
272816 G
1 G
272817 AATTAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:273543 original size:26 final size:26
Alignment explanation
Indices: 273507--273559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
273497 GTTGACTTAG
*
273507 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
273533 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
273559 G
1 G
273560 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:274167 original size:742 final size:743
Alignment explanation
Indices: 272743--275730 Score: 4080
Period size: 719 Copynumber: 4.1 Consensus size: 743
272733 CTTGGAATGA
* * * * *
272743 TCGTTTCGTGGGTCGACTTAGGCATACGGAATTCATTCCTAGTTTAAGCATACGGAGTTCATTCT
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * *
272808 CAGTCTAAGAATTAGATCGGACCGA-GGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGT
66 CAGTCTAAG-ATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG-
* * * *
272872 TGCCGTATTTTTCTTTGCCTGGG-ACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGAC-T
129 TGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACAT
* * * *
272935 TTGGGTTTCTGGCGACCGGGGGGCCGGGTGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTAC
194 TGGGGTTTC-GACGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
273000 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
* ** * *
273065 TTTGAGA-TTTACAGGTTTGCTGCCAGCAGCTTTTAAAATGTTTGAAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
273129 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
387 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* *
273194 TACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCCGAAAGAATTTTAAAAAATCTCG
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCG
* ** * *
273259 AACCGTAAAAAGTTTTGAAAATCATCAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACG
517 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
273324 CGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAACGGCATTGGCAAGCAGAAATA
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATA
* *
273389 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCTGTCTCTCTGG
647 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGG
*
273454 CCGACGTAGTACCGGCCCGCCCGCCCGCCCGC
712 CCGACGTAGTACCCGCCCGCCCGCCCGCCCGC
* *
273486 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGCCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
273551 CAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * ** * * *
273616 CCGCATTTTTCTTCACCGGGGCACCATTGGCGGAGCATCATCGGAGAACTTGATCGGTGACATTG
131 CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTG
* * * *
273681 GGGTTTCGACGATCAGAGGGGCC-GGGGGTGTGCACACATGATGTGTGACGGGTGCTGGTACTTG
196 GGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** * * *
273745 GACCTTATGCTAGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* *
273810 TAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
273875 GGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
390 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * *
273940 AGGGATCACCTCTACCAAGTTT-GGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATC-CTGAA
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTC-GAA
* *
274003 CCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTG
519 CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
274068 AAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATG
* * *
274133 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCGTCCTGTCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
274198 GACGTAGTACCCGCCCGCCCGCCTGCCTGCCCGC
714 GACGTAGTACCCGCCCGCCCG-C--CC-GCCCGC
** * * *
274232 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
274297 CAGTCTAAGATCGGACCCGATCGAGGGATGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTG
66 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
274362 CCGTATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCGGCATTG
131 CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTG
* * *
274416 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGG
196 GGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
274481 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTG
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
** **
274546 AGATTTTTTAGGTTTGCTGCCAGTAGCGTTTAAAGTGTCTGAAATGGGGACA-TTTTATTCAAAT
326 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAAT
* * **
274610 GGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGGGAAAAAAAATAC
390 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *
274675 AAGGATCACGTCTACCAAGTTTGGGGCCGAAACGTC-TTCCGAAAAAATTTTAAAAAATC-CTAA
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCCGAAAAAATTTTAAAAAATCTC-GA
* * * * *
274738 ACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCTATGAAACTTCACGT
518 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
274803 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATAT
* * * * *
274868 GAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTTTGGT
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGC
* * * * * *
274933 CGGCGTAGTGCCCGCCCGGCTGCCTGCCTGC
713 CGACGTAGTACCCGCCCGCCCGCCCGCCCGC
274964 TCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A-C--A--GAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
275003 CAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGATGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
275068 CCGCATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCATCGCCAGAGAACCTGACCAGCGGCATTG
131 CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTG
275133 GGG-TTC-ATGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-
196 GGGTTTCGA--CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
275195 TCTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAAAACTCACACCCACTTAAAGAGC
257 T-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* * *
275260 ATTTGAGATTTTACTGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
321 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
275325 AAATGGTCACAAAATGTTGTACACTTCAAGGTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAA
386 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * * * *
275390 ATACAAGGATCATGTATACTAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTG
451 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTC
* *
275455 GAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
516 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
275520 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCTGTTGGCACGTAGAGA
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCAAGCAGAAA
* *
275584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCCTGTCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
* * * *
275649 GGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGC
710 GGCCGACGTAGTACCCGCCCGCCCGCCCGCCCGC
* * *
275683 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
275731 ATTGGACCGG
Statistics
Matches: 1983, Mismatches: 206, Indels: 114
0.86 0.09 0.05
Matches are distributed among these distances:
706 92 0.05
708 1 0.00
709 2 0.00
710 1 0.00
711 1 0.00
712 2 0.00
714 1 0.00
715 2 0.00
716 2 0.00
717 30 0.02
718 12 0.01
719 481 0.24
720 5 0.00
723 1 0.00
724 1 0.00
725 2 0.00
726 2 0.00
727 1 0.00
728 1 0.00
731 1 0.00
732 19 0.01
733 1 0.00
734 11 0.01
735 262 0.13
736 232 0.12
737 2 0.00
738 1 0.00
739 1 0.00
740 2 0.00
741 1 0.00
742 367 0.19
743 280 0.14
744 16 0.01
745 2 0.00
746 145 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (743 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTG
GGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGA
CGTAGTACCCGCCCGCCCGCCCGCCCGC
Found at i:274289 original size:26 final size:26
Alignment explanation
Indices: 274253--274305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
274243 GTTGGCTTAG
274253 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
274279 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
274305 G
1 G
274306 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:275884 original size:26 final size:26
Alignment explanation
Indices: 275855--275907 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
275845 GTTGACTTAG
*
275855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
275881 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
275907 G
1 G
275908 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:276706 original size:870 final size:863
Alignment explanation
Indices: 275103--277987 Score: 3483
Period size: 870 Copynumber: 3.2 Consensus size: 863
275093 ATCGTCGGAG
*
275103 CATCGCCAGAGAACCTGACCAGCGGCATTGGGGTTCATGCGATCGGGGGGGCCGGGGGGGTGTGC
1 CATCGTCAGAGAACCTGACCAGCGGCATTGGGGTTCATGCGATCGGGGGGG-CGGGGGGGTGTGC
* * *
275168 GCACATGATGTGCGATGGGTGCTGGTATCTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * * *
275233 TTGAAAACTCACACCCACTTAAAGAGCATTTGAGATTTTACTGATTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAA
* * * *
275298 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCAAGGTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
275363 TGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTATACTAAGTTTAGGGCCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACT
* * *
275428 CCTTCCGAAAAAATTTTAAAAAATCTGGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
325 CCTTCCGAAAAAATTTTAAAAAATCTCGAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
275493 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
275558 ATAAAAATGCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
275623 CCACGGCTTACGTATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTT
519 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCC-CC-GCC-GCCCGCCCGCTTGTT
*
275688 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC
581 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC
* * * *
275753 GGCAGTAGGATTGGCAGC-AC-GTA----GA---GGTCGATCCCTGGCTTGCGCATCCCGCCCCC
646 GGTAGTAGGATCGACAGCAACAG-AGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCC-ACCCC
* *
275809 TCTGGTCGGCTGAGAACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
709 TC---T-GGC--AG-A-CTGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
275874 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCACA
766 AGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACA
275939 TGCTGGGCTCGAGCATTTTTCTTCGTCGGGGCAC
830 TGCTGGGCTCGAGCATTTTTCTTCGTCGGGGCAC
*
275973 CATCGTC-GAGAACCTGACCAGCGGCGTTGGGGTTCATGCGATCGGGGGGGCAAGGGGGGGTGTG
1 CATCGTCAGAGAACCTGACCAGCGGCATTGGGGTTCATGCGATCGGGGGGGC--GGGGGGGTGTG
*
276037 CGCACATGATGTGTGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
276102 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCACCGGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTA
*
276167 AAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* **
276232 CTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGGAAGTTTAGGGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAC
* *
276297 TCCTTCCGAAAAAATTTTTAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAAGAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCTCGAAC-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
276362 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
388 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
276427 CATAAAAATGCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
453 CATAAAAATGCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
276492 TCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCTTCCCGCTCGCCCGCCCGCTTGT
518 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCC--CCCGC-CGCCCGCCCGCTTGT
* ** * * *
276557 TTCGTCGATTGGCTTATTCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCAAGGATTG
580 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTG
* * * * *
276622 CAGTAGTAGGATCGACAGCATACAGAGGGGGACCCGGCCGATCCCTGGCTCGTGCATCTCACCCC
645 CGGTAGTAGGATCGACAGCA-ACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCC
* ** *
276687 ACTGGCAGACTGAACGCTCGCATGCTCCTTTCGTAAGTTGACTTGGGCATACGGAGTTCATTCCC
709 TCTGGCAGACTGAACGCT--C--G-T--TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * *
276752 AATCTAAGCATACGGAGTTCATTCCCAATCTAGGATTGGACCAGACCAAGGGTTGCGGCAGCACA
766 AGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACA
*
276817 TGCTGGGCTCGAGCATGTGCTGGTGTCGCAATTTTCTTCGCCGGGGCAC
830 TGCTGGGCTCGAGCA----------T-----TTTTCTTCGTCGGGGCAC
* * ** *
276866 CATCACCGGAGCATCACTGGAGTACCTGACCGGCGGCATTGGGGTTCCGGCGAT-GGGGGGGCTG
1 CAT---C---G--TCA---GAGAACCTGACCAGCGGCATTGGGGTTCATGCGATCGGGGGGGCGG
* * *
276930 GGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
55 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCC
* * * * *
276995 TCATCAAACCTCGGGAACTCACACCCTCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCGAG
120 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAG
* * *
277060 TAGCCATTAAATTGTTTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCG
185 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
277125 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
250 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAG
** **
277190 GGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC-CTGAATCGCAAAAAGTTTTGAAAATCAG
315 GGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTC-GAA-CGCAAAAAGTTTCAAAAATC-G
* *
277254 -CAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTAT
376 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * * * * *
277318 GAATTTACAAGCCATCAAAATGGC-AATGTCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
441 GAATTTACAAGCCATAAAAAT-GCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCT
* * *
277382 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCGCCT
505 ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCCCGCCGCCC
* * *
277446 GCCCG-TTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
570 GCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
* * * * * *
277510 ACCGAGGGTTGCGGTAGCAAGATCGATAGCACATAGAGGGGGACCCGGTCGATCCCTGACTTGCG
634 ACCAAGGGTTGCGGTAGTAGGATCGACAGCA-ACAGAGGGGGACCCGGTCGATCCCTGGCTTGCG
* * * * **
277575 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
698 CATCCCACCCCTCTGGCAGACTGA--------ACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
* *
277640 AGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCCAGTCTGAGATCGGATCAGACCGAGGGTT
755 AGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* *
277705 GCGGCAGCACTTGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCA
819 GCGGCAGCACATGCTGGGCTC--G-A------------GCATTTTTCTTCGTCGGGG------CA
277770 CC
863 -C
*
277772 GGAGCATCGTCAGAGAACCTGA-CAGGCGGCATTGGGGTTC-TAGCGATC-GGGGGGC-CGGGGG
1 ----CATCGTCAGAGAACCTGACCA-GCGGCATTGGGGTTCAT-GCGATCGGGGGGGCGGGGGGG
* * * * **
277833 TGTGCGCACATGATGTGCGATGGGTGCTGCTACTTAGCCCGTATAATATCCCGCC-ATCCCTCAT
60 TGTGCGCACATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCC-CCTATCCCTCAT
* *
277897 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGC
124 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGC
*
277962 CATTAAAGTGTCCT-AAATGGAGACAC
189 CATTAAAGTGT-CTGAAATGGGGACAC
277988 AAATGTCACA
Statistics
Matches: 1742, Mismatches: 176, Indels: 166
0.84 0.08 0.08
Matches are distributed among these distances:
868 1 0.00
869 43 0.02
870 574 0.33
871 4 0.00
872 7 0.00
873 1 0.00
874 4 0.00
875 2 0.00
876 2 0.00
877 3 0.00
878 105 0.06
879 21 0.01
888 1 0.00
893 20 0.01
896 1 0.00
898 145 0.08
899 275 0.16
900 3 0.00
901 5 0.00
902 272 0.16
903 193 0.11
904 14 0.01
905 33 0.02
906 1 0.00
907 6 0.00
910 3 0.00
914 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (863 bp):
CATCGTCAGAGAACCTGACCAGCGGCATTGGGGTTCATGCGATCGGGGGGGCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGCTGTTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCCCGCCGCCCGCCCGCTTGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAG
TAGGATCGACAGCAACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCA
GACTGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
TTTTCTTCGTCGGGGCAC
Found at i:276762 original size:26 final size:26
Alignment explanation
Indices: 276733--276783 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
276723 GTTGACTTGG
276733 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
276759 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
276784 GGATTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:281382 original size:900 final size:892
Alignment explanation
Indices: 278879--282967 Score: 4643
Period size: 917 Copynumber: 4.5 Consensus size: 892
278869 CGTCAGAGCA
* ***
278879 TCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
1 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* * *
278944 ATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
66 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
* * * * * * * *
279009 TTTGGCTGGCGTAGTGC-CCGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
130 TTTGAC-CGCGTAGCGCTACG-CTGCCC-T---CCCGCTCATTTCGTCGGTTGGCTTAGGCATAA
* * ** * * * * **
279073 GAAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGC
189 G-AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATAGGTAGCACGC
* *** * * * * *
279138 AGAAGGGGACC-CGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCA
253 AGAGGGGGACCTC-AACGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * *
279202 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGATTTCATTCCCAGTCTGAGCA-AACAGAGTTC
317 CGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATAA-TGAGTTC
* * * * * * **
279265 ATTCCCAGTCTAAGATTGAATCAG-ACCAACGGTTACGGTAGCACATGCTGGGCTCGGGCATGTG
380 ATTCCCAGTCTAAGATCGGA-CCGCACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * * * *
279329 CTGGTGCCGCATTTTTCTTTGCCGGGGCATCATCACCGGAGCATCACCGGAGAACCTGACCGACT
444 CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGACTGGCT
* * * * * * * *
279394 GCGTTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGTGTGCACTCATGATGTCCGATGGGTGCTA
509 GCATTAGGGTTCTGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
279459 GTACTTGGCTCTTAGATTGGCCCCCTATCCCTCTTCAACCCTCAAGAACTCACACCCCCTTAAAG
572 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
*
279524 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTC
637 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
279589 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
702 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTT-TGCAT-CCAACA
* * *
279654 AAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
764 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * ** * * *
279719 AACGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACT
829 CCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
279783 TCTCGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
1 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* * *
279848 AAATATGAAGATGTGTCTAAACCCACATACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTC
66 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
* * *
279913 TCTGGCCGACGTAGTGCCCGCT-CGCTCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
130 TTTGACCG-CGTA--G--CGCTACGCT---------GCCCTCCCGCTCATTTCGTCGGTTGGCTT
* ** * **
279977 AGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGA-TCGAGGGTTGCAGCAACAGGATAG
181 AGGCATA-AGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGCAGTAGGATAG
* * ** * * * *
280041 GCAGCACGTAGAGGGGGACC-CGGCCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGACTGA
244 GTAGCACGCAGAGGGGGACCTC-AACGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGA
*
280105 GCGCCCGCACGCTCGTTTCGTGAGTTGACTTA-G----C------CA-T---A--C---G-----
308 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAA
* * * * * *
280145 -GAGTTCATTCCCAGTCTAAGAACGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGA
373 TGAGTTCATTCCCAGTCTAAGATCGGACCGCACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
280209 CATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCATCATCGAAGCATCACCAGAGAACCTGA
438 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGA
* * * * *
280274 -TCGACGGCGTTTGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGG
503 CT-GGCTGCATTAGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
280338 GTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
566 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
280403 TTTAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
631 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
280468 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATG
696 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TTTTT-TGCAT-
* * ** * *
280533 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAAATCCTTCCAAAAAAATTTTA
758 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
280598 AAAAATCCCAAACGGTAAAAAGTTTCAAAAATC-TTAAAAATAGAAAACGAGTCATCTTGCCATG
823 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATG
280662 AAACT
888 AAACT
*
280667 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
1 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* *
280732 AAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTC
66 AAATATGAAGATGTGC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
* *
280797 TTTGACCAGCGTAGCGCTAACCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAAG
130 TTTGACC-GCGTAGCGCT-A--CG-CTGCCCTCCCGCTCATTTCGTCGGTTGGCTTAGGCATAAG
* * * * * * * * *
280862 AAGTTCAATCCCAGTGTAAGATCAGACCCGACTGATGGTTGCGGCAGCAGGATTGATAGCATGCA
190 -AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATAGGTAGCACGCA
* *
280927 GAGGGGGACCTCAACGATCTTCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACG
254 GAGGGGGACCTCAACGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
280992 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAATGAGTTCATTC
319 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAATGAGTTCATTC
* ** * * * *
281057 CCAGTCTAAGATTGGATTGCATCGAGGGTTGCGGCAGCACATGTTGGGCTTGGGCATGTGCTGGT
384 CCAGTCTAAGATCGGACCGCACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** *
281122 GCCGTATTTTTCTTTACCGGGGCACCATCATCGGAGCATCGCCCGAGAACCTGACTGGCTGCATT
449 GCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGACTGGCTGCATT
* * ** * * * * *
281187 AAGGTTCCGGTGAT-AGCGGGCCGGGGGGTATGCGCACATGATGTGCGATGGATGCTGGTACCTG
514 AGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
281251 GCCCTTAAACTGGCCCCCTATCCCTCAT-ATAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
579 GCCCTTATATTGGCCCCCTATCCCTCATCA-AACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* *
281315 TGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAA
643 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
281380 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATGCACACCAACAAAAATA
708 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA-TTTTTT-TGCA-TCCAACAAAAATA
* *
281445 CAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
770 CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * *
281510 CCGTAAAAAGTTTCATAAATCATAAAAAATAGAAAACGAGTTGTCTTGCCTTGAAACT
835 CCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
281568 TCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAG
1 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* * * *
281633 AAATATGAAGATGTGTCTAAACTCACCTAACACCCTATCGATCCACGGCTTGCGCATCCTGCCTC
66 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
* * *
281698 TCTGA-C-CG--GCG-TA-G-TGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
130 TTTGACCGCGTAGCGCTACGCTGCCCTCCCGCTCATTTCGTCGGTTGGCTTAGGCATA-AGAGTT
* ** * * *
281756 CATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGACAGTAGGATAGGCAGCACGCAGAGGG
194 CATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATAGGTAGCACGCAGAGGG
* * * *
281821 TGACC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
259 GGACCTC-AACGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
281885 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA-GAGTTCATTCCCA
323 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-ATGAGTTCATTCCCA
*
281949 GTCTAAGCATACGGAGTTAATTCCTAGTCTAAGATCGGACCGAAATGAGGGTTACGACAGCACAT
387 GTCTAAG-AT-C-G-G---A---C----C---G--C--ACC-----GAGGGTTGCGACAGCACAT
* * * * *
282014 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGT
426 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGC
* * *
282079 CAGAGAACCTGACCGG-TGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGATGTGCACACAT
491 CAGAGAACCTGACTGGCT-GCATTAGGGTTCTGACGATCGGGGGGCCGGGGGG-TGTGCGCACAT
282143 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
554 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
*
282208 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
619 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
282273 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAA--
684 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
*
282336 ---TTG--T--AACAAAAATACAAGGATCACATCTACCAAGTTTGTGGCCAAAACTCCTTCCGAA
749 TTTTTGCATCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
282394 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
814 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
282459 CTTGCCATGAAACT
879 CTTGCCATGAAACT
* *
282473 TCACGTGAAGGCTTAAGCGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAG
1 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* * * * *
282538 AAATATGAACATGTTCCTAAGCCCACCTACCACCCTACCGATCCACGGCTTACT-CATCCTGTC-
66 AAATATGAAGATG-TGCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GTGCATCCTGTCT
* ** * * **
282601 CCTCCAGCCGGCGTAGTGC-CCGTCTGGCTACC-CGTCCGCTCATTTCAACGGTTGGCTTAGGCA
129 CTTTGA-CC-GCGTAGCGCTACG-CT-GC--CCTC--CCGCTCATTTCGTCGGTTGGCTTAGGCA
* * *
282664 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGTAGTAGGATCGGTAGC
186 TA-AGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGCAGTAGGATAGGTAGC
* * *
282728 ACACAGAGGGGGA-CTCAATTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
249 ACGCAGAGGGGGACCTCAA-CGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCC
*
282792 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-ATGGAG
313 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAAT-GAG
* * * *
282856 TCCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGCGACAGCACATGCTAGGCTCGGGCATG
377 TTCATTCCCAGTCTAAGATCGGACCGCACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * * *
282921 TACTTGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATC
442 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
282968 ACGTGAAGGC
Statistics
Matches: 2751, Mismatches: 317, Indels: 247
0.83 0.10 0.07
Matches are distributed among these distances:
875 2 0.00
876 157 0.06
877 3 0.00
880 4 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 170 0.06
885 294 0.11
886 142 0.05
887 2 0.00
888 2 0.00
889 213 0.08
890 4 0.00
891 75 0.03
892 2 0.00
893 2 0.00
894 1 0.00
895 2 0.00
896 8 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 301 0.11
901 156 0.06
902 128 0.05
903 3 0.00
904 130 0.05
905 233 0.08
906 4 0.00
907 3 0.00
908 7 0.00
910 7 0.00
911 3 0.00
912 155 0.06
913 3 0.00
914 4 0.00
915 103 0.04
916 22 0.01
917 398 0.14
918 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (892 bp):
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
AAATATGAAGATGTGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCT
TTGACCGCGTAGCGCTACGCTGCCCTCCCGCTCATTTCGTCGGTTGGCTTAGGCATAAGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATAGGTAGCACGCAGAGGGGG
ACCTCAACGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAATGAGTTCATTCCCAGTCT
AAGATCGGACCGCACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGACTGGCTGCATTAGGGTTC
TGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGCATCCAACAAAAATACAAGGATCACA
TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
Found at i:281940 original size:26 final size:25
Alignment explanation
Indices: 281903--281981 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
281893 GTTGACTTAG
281903 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
281929 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
* *
281955 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
281981 G
1 G
281982 ATCGGACCGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:282856 original size:26 final size:26
Alignment explanation
Indices: 282820--282872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
282810 GTTGACTTAG
*
282820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
282846 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
282872 G
1 G
282873 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:284151 original size:26 final size:26
Alignment explanation
Indices: 284122--284174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
284112 GTTGACTTAG
*
284122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
284148 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
284174 G
1 G
284175 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:284981 original size:26 final size:26
Alignment explanation
Indices: 284952--285004 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
284942 GTTGACTTAG
*
284952 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
284978 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
285004 G
1 G
285005 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:285023 original size:830 final size:829
Alignment explanation
Indices: 283322--285502 Score: 3798
Period size: 830 Copynumber: 2.6 Consensus size: 829
283312 GTTGACTTAG
* * * * * *
283322 GCATCCAGAGTTCATTCCC-GTCTAAGATCGGATCGGACCGAGGGTTACGATAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
*** * * ** * * * *
283386 CTGGGGCTTGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCG-CTGGAG
66 CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTC-GGAG
* *** * * * * *
283450 AACCTGACCGGCGGCATTGAAATTCCGACGATTGGGGTGGTCGGGGG-G-TGTGCGCACATTATG
130 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGATATGCGCACATGATG
283513 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
283578 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
283643 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTACCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
*
283708 TGTGTATGCCAATAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
390 TGTGTATGCCAATAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
283773 AAATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAATTAGAAAATGAGTCGTC
455 AAATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
283838 TTGCCATAAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATC
520 TTGCCATAAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATC
283903 CTGCCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCATA
585 CTGCCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCATA
283968 CGAAAATCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACG
650 CGAAAATCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACG
284033 CAGAGGGGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCTGACTGATCGCCCGCA
715 CAGAGGGGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCTGACTGATCGCCCGCA
284098 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
780 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
284148 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
284213 CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTCGGAGA
66 CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTCGGAGA
284278 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGAGATATGCGCACATGATG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGAGATATGCGCACATGATG
*
284343 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * ** *
284408 GTACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTGCAGTGTTTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
284473 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTACCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
*
284538 TGTGTATGCCAATAAAATTACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
390 TGTGTATGCCAATAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
284603 AAATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
455 AAATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
284668 TTGCCATAAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATC
520 TTGCCATAAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATC
284733 CTGCCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCATA
585 CTGCCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCATA
284798 CGAAAATCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACG
650 CGAAAATCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACG
284863 CAGAGGGGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCTGACTGATCGCCCGCA
715 CAGAGGGGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCTGACTGATCGCCCGCA
284928 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
780 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
284978 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
285043 CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTCGGAGA
66 CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTCGGAGA
285108 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGATATGCGCACATGATGT
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGATATGCGCACATGATGT
285173 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
285238 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
285303 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAAATTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTACCTGAATTTTTT
* * * * * *
285367 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCTGAAA
390 TGTGTATGCCAATAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * **
285431 AAACTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTC
455 AAATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
285496 TTGCCAT
520 TTGCCAT
285503 GAAACTTCAC
Statistics
Matches: 1284, Mismatches: 65, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
826 18 0.01
827 119 0.09
828 98 0.08
829 252 0.20
830 797 0.62
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (829 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGG
CTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCACCATCGGAGCATCGTCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGATATGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTT
GTGTATGCCAATAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAATAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCT
TGCCATAAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATCC
TGCCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCATAC
GAAAATCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACGC
AGAGGGGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCTGACTGATCGCCCGCAT
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:285885 original size:26 final size:26
Alignment explanation
Indices: 285856--285908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
285846 GTTGATTTAG
285856 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
285882 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
285908 G
1 G
285909 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:287406 original size:891 final size:889
Alignment explanation
Indices: 284675--287859 Score: 4198
Period size: 891 Copynumber: 3.6 Consensus size: 889
284665 GTCTTGCCAT
* ** * * *
284675 AAATATGAAAATGTGCCTAAACCCACCTAAAACCCTATCGATCCACGGCTTGCGCATCCTGCCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* **
284740 TCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA-GCATACGAAAA
66 TCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGT
* * * * * * * * *
284804 TCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGTGACAGTAGGATCGGTAGCACGCAGAGG
128 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAG
* * * *
284869 GGCACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGG-CTGACTGATCGCCCGCATGCTC
193 GG-ACCCGACCGATCCCCGGCTTGCGCATCCCGC-CCTCTGGTC-GGCTGAGCGCCCGCACGCTC
* * *
284933 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
255 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCA
* * * **
284998 GTCTAAGATCGGACCGAACCGAGGGTTATGGTAGCACATGCTGGGCTCAAGCATGTGCTGGTGTC
320 GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * **
285063 GCATTTTTCTTCGTC-AGGGCACCACCATCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGG
385 GCATTTTTCTTCGTCGA-GGCACCATCACCGGAGCATCG-C-GAGAACCTGACCGGCAGCATTGG
* *
285127 GGTTCCGACGATCGGGGGGGCCGGGGGAGATATGCGCACATGATGTGCGATGGGTGCTGGTACTT
447 GGTTCCGACGATC-GGGGGGCCGGGGG-G-TGTGCGCACATGATGTGCGATTGGTGCTGGTACTT
285192 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
509 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
285257 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
574 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAA
* * * *
285322 TGGTCACAAAATCTTGTACACTTCAGGTTTTTAGCTGAAATTTTTTATGCATGCCAACAAAAATA
639 TGGTCACAAAATCTTGTACACTTC-GATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* ** *
285387 CAAGGATCACGTCTACCATGTTTGGGCCAAAACTCCTTCTGAAAAAACTTTAAAAAATCTCGAAC
703 CAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
*
285452 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
768 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
285517 AGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
833 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* *
285574 AAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
285639 TCTGGCCGGCGTAGTGCTTGACCGCCCGCCCGTGTGCTAGTTTCATCGGTTGGCTTAGCCATACG
66 TCTGGCCGGCGTAGT-C--GCCCGCCCGCCC----GCTCGTTTCATCGGTTGGCTTAGGCATACG
** * * * ** * *
285704 AAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGATAACAGGATTGGTTGGACGCC
124 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCA
* * * * *
285769 GAAGGGACCC-AGCCGATCCCCGGCTTGCGAAATCCCACCCGTCTGGTCTGCTGAGCACCCGTAC
189 GAAGGGACCCGA-CCGATCCCCGGCTTGCG-CATCCCGCCC-TCTGGTCGGCTGAGCGCCCGCAC
* *
285833 GCTTATTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
251 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
* * * * * **
285898 CCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAAATGCCAGGCTCGGGCATGTGCTGG
316 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
285963 TG-CTGCATTTTTCTTCGTCGGGGCACCATCACC---G--T----TGAACCTGACCGACAGCATT
381 TGTC-GCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCGAGAACCTGACCGGCAGCATT
* * *
286018 GGGGTTCCGACGATCGGGGGGTCGAGGGGGTGTACGCACATGATGTGCGA-TGGCTGTTGGTACT
445 GGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATTGG-TGCTGGTACT
*
286082 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
508 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
286147 TTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
573 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAA
*
286212 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATT
638 ATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * *
286277 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAGAAATTTTAAAAAATC-CTG
702 ACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-G
** * * * *
286341 AATTGCAAAAAATTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAAG
765 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
**
286406 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
830 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* *
286466 AAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
286531 TCTAGCCAGCGTAGT-GCCCGCCCGCCAGCTCGTTTCGTTGGTTGGATTAGGCATACGGAGTTCA
66 TCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
** ** * * *
286595 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCATGCAGCAATGG
131 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG-AAGGG
* * * *
286660 TCTCGACCGGTCCCCGGCTTGCGCATCCCGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTCC
195 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTC
* * * *
286725 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCTATTCTA
260 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * *
286790 TGATCGGATTGGACCGAGGG-TAGCGGTAGCACATGCTGGGGTCGGGCATGTGCTGGTG-CGACA
325 AGATCGGACCGGACCGAGGGTTA-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCG-CA
* *
286853 TTTTTCTTTGTCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCAGCAATGGGGTT
388 TTTTTCTTCGTCGAGGCACCATCACCGGAGCATCG-C-GAGAACCTGACCGGCAGCATTGGGGTT
286918 CCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTT
451 CCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTT
* * *
286982 ATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCTCCTTAAAGAGCATTTGAGATT
516 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
287047 TTACAGGTTTGCTGACAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCAC
581 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * **
287112 AAAATCATGTAGACTTCGATTTTTAGTTGAATTTTTTTGTGCACACCAAAAAAAATACAAGGATC
646 AAAATCTTGTACACTTCGATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * *
287177 CCGTCTAACAAGTTTAGGGCCAGAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
711 ACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* *
287242 AGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTA
775 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
287307 AGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGTAG
840 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * *
287357 AAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCAACCTGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
287422 TCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTTGGCTTAGGCGTACGGAG
66 TCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCTCGTTTCATCG-GTTGGCTTAGGCATACGAAG
* * * * *
287487 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATTGACAGCACGCA-AA
127 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAA
* * * *
287551 GGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGACCGCCCGCACACT
192 --GGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGTCGGCTGAGCGCCCGCACGCT
* * * *
287616 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCTAGTCTAAGCATACGGAGTTCATTCCC
254 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCC
* * * * * *
287681 AGTCTAAGATCAGACCAGACCGAGGGTTACGACAACACATGCTGGGCTCGGGCCTGTGATGGTGT
319 AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* ** * *** *
287746 CGTATTTTTCTTCACCGGGGCACCATTGTCGGAGCATCGACTGAGAACCTGACCGGCGGCATTGG
384 CGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCG-C-GAGAACCTGACCGGCAGCATTGG
*
287811 GGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATATGCGAT
447 GGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
287860 GGNNNNNNNN
Statistics
Matches: 1990, Mismatches: 249, Indels: 94
0.85 0.11 0.04
Matches are distributed among these distances:
882 2 0.00
883 162 0.08
884 85 0.04
885 22 0.01
886 2 0.00
888 11 0.01
890 3 0.00
891 508 0.26
892 411 0.21
893 38 0.02
894 41 0.02
895 23 0.01
896 98 0.05
897 198 0.10
898 11 0.01
899 108 0.05
901 1 0.00
902 1 0.00
903 44 0.02
904 220 0.11
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (889 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGA
CCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTT
TTCTTCGTCGAGGCACCATCACCGGAGCATCGCGAGAACCTGACCGGCAGCATTGGGGTTCCGAC
GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
Found at i:287672 original size:26 final size:26
Alignment explanation
Indices: 287636--287688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
287626 GTTGACTTAG
* *
287636 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
287662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
287688 G
1 G
287689 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:288925 original size:14 final size:13
Alignment explanation
Indices: 288903--288936 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
288893 TAAAAAACAT
*
288903 AAAATAAAAGAAA
1 AAAAAAAAAGAAA
288916 AGAAAAAAAAGAAA
1 A-AAAAAAAAGAAA
288930 AAAAAAA
1 AAAAAAA
288937 TAATACAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:289104 original size:1 final size:1
Alignment explanation
Indices: 289098--289153 Score: 67
Period size: 1 Copynumber: 56.0 Consensus size: 1
289088 AACATTGTCA
* * * * *
289098 TTTTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
289154 ACCAAAGCTC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:289112 original size:9 final size:9
Alignment explanation
Indices: 289098--289153 Score: 84
Period size: 9 Copynumber: 6.7 Consensus size: 9
289088 AACATTGTCA
289098 TTTTTTTTG
1 TTTTTTTTG
289107 TTTTTTTTG
1 TTTTTTTTG
289116 TTTTTTTTG
1 TTTTTTTTG
289125 -TTTTTTTG
1 TTTTTTTTG
289133 --TTTTTTG
1 TTTTTTTTG
289140 TTTTTTTT-
1 TTTTTTTTG
289148 TTTTTT
1 TTTTTT
289154 ACCAAAGCTC
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.16
8 14 0.31
9 24 0.53
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:289250 original size:40 final size:41
Alignment explanation
Indices: 289160--289378 Score: 376
Period size: 40 Copynumber: 5.4 Consensus size: 41
289150 TTTTACCAAA
*
289160 GCTCCTCTAAACAGAGGC-TCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
289201 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
289241 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
289282 GCTCCTC-AAACAGA-GCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
289321 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
289361 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAAACAGAGGC
289379 TTGTCCTCTA
Statistics
Matches: 171, Mismatches: 3, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
39 32 0.19
40 81 0.47
41 49 0.29
42 9 0.05
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:289418 original size:59 final size:59
Alignment explanation
Indices: 289323--289437 Score: 221
Period size: 59 Copynumber: 1.9 Consensus size: 59
289313 AGTAAATTGC
*
289323 TCCTCTAAACAGAGGCACCACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGCTTG
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCTTG
289382 TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGC
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGC
289438 ACCACGACTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (59 bp):
TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCTTG
Found at i:289437 original size:40 final size:41
Alignment explanation
Indices: 289382--289476 Score: 183
Period size: 40 Copynumber: 2.3 Consensus size: 41
289372 CAGAGGCTTG
289382 TCCTCTAAACAGAGGCACCACGACTTTGAAAA-TAAATTGC
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
289422 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
289463 TCCTCTAAACAGAG
1 TCCTCTAAACAGAG
289477 TTGCTCCTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 32 0.59
41 22 0.41
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (41 bp):
TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
Found at i:289481 original size:59 final size:60
Alignment explanation
Indices: 289418--289536 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 60
289408 TGAAAATAAA
289418 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAG
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAG
289477 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAG
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAG
289537 GCACCACGAC
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 32 0.54
60 27 0.46
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (60 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAG
Found at i:289482 original size:18 final size:18
Alignment explanation
Indices: 289459--289494 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
289449 GAAAAGTAAA
289459 TTGCTCCTCTAAACAGAG
1 TTGCTCCTCTAAACAGAG
289477 TTGCTCCTCTAAACAGAG
1 TTGCTCCTCTAAACAGAG
289495 GCACCACGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
TTGCTCCTCTAAACAGAG
Found at i:289485 original size:99 final size:100
Alignment explanation
Indices: 289280--289577 Score: 516
Period size: 99 Copynumber: 3.0 Consensus size: 100
289270 GGAAAGTAAA
*
289280 TTGCTCCTC-AAACAGA-GCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTT-GAAAATAAATTGCTCCTCTAAACAGAGGCACCA
289343 CGACTTTG-AAAGTAAATTGCTCCTCTAAACAGAGGC
65 CGACTTTGAAAAGTAAATTGCTCCTCTAAACAGA-GC
289379 TTG-TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
289443 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG-
66 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGC
289477 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAA-TAAATTGCTCCTCTAAACAGAGGCACC
289542 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
64 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
289578 GCACCACGAC
Statistics
Matches: 192, Mismatches: 1, Indels: 10
0.95 0.00 0.05
Matches are distributed among these distances:
98 8 0.04
99 79 0.41
100 42 0.22
101 63 0.33
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (100 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGC
Found at i:289567 original size:41 final size:41
Alignment explanation
Indices: 289477--289608 Score: 255
Period size: 41 Copynumber: 3.2 Consensus size: 41
289467 CTAAACAGAG
289477 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAA
289519 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAA
289560 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAA
289601 TTGCTCCT
1 TTGCTCCT
289609 TGACAATCAT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
41 58 0.64
42 32 0.36
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAA
Found at i:290836 original size:17 final size:18
Alignment explanation
Indices: 290814--290851 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
290804 CTTTTTTTCA
290814 TTTTC-TCATTTCTTTTT
1 TTTTCTTCATTTCTTTTT
**
290831 TTTTCTTTTTTTCTTTTT
1 TTTTCTTCATTTCTTTTT
290849 TTT
1 TTT
290852 CCCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTCTTCATTTCTTTTT
Found at i:290837 original size:10 final size:10
Alignment explanation
Indices: 290822--290864 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
290812 CATTTTCTCA
290822 TTTCTTTTTT
1 TTTCTTTTTT
290832 TTTC--TTTT
1 TTTCTTTTTT
290840 TTTCTTTTTT
1 TTTCTTTTTT
*
290850 TTCCCTTTTTT
1 TT-TCTTTTTT
290861 TTTC
1 TTTC
290865 ATCATCCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:290839 original size:8 final size:8
Alignment explanation
Indices: 290803--290850 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
290793 AATTTGAATC
290803 TCTTTTTT
1 TCTTTTTT
* *
290811 TCATTTTC
1 TCTTTTTT
* *
290819 TCATTTCT
1 TCTTTTTT
290827 T-TTTTTT
1 TCTTTTTT
290834 TCTTTTTT
1 TCTTTTTT
290842 TCTTTTTT
1 TCTTTTTT
290850 T
1 T
290851 TCCCTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 5 0.15
8 28 0.85
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (8 bp):
TCTTTTTT
Found at i:290843 original size:18 final size:19
Alignment explanation
Indices: 290822--290861 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
290812 CATTTTCTCA
*
290822 TTTCTTTTTTTT-TCTTTT
1 TTTCTTTTTTTTCCCTTTT
290840 TTTCTTTTTTTTCCCTTTT
1 TTTCTTTTTTTTCCCTTTT
290859 TTT
1 TTT
290862 TTCATCATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTCTTTTTTTTCCCTTTT
Found at i:294990 original size:62 final size:62
Alignment explanation
Indices: 294741--295175 Score: 410
Period size: 61 Copynumber: 7.1 Consensus size: 62
294731 TCTTATGTAG
*
294741 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTCGA-TTTTC----A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTT--ATTTTTCTTTTA
294801 A
62 A
*
294802 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
* * *
294864 GGAAAATTGATTACTTTTCAACTTTTCCTCAAAACAGTCCTTTTTTTGGAAA---A-TTTACTTT
1 GGAAAATTGA-TAC-TTTCAACTTTTCCCCAAAA-A-T--ATTTTTTGGAAATTTATTTTTCTTT
294925 TAA
60 TAA
294928 GGAAAA-TGATACTTTCAACTTTTCCCCAAAAATCATTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTGGAAATTTATTTTTCTTTTAA
* * **
294990 GGAAAATTG-TACTCTCCAAACTTTT-CCCTAAAATATTTTTTGGAAATTT-TTCGAT-TTTTAA
1 GGAAAATTGATACT-TTC-AACTTTTCCCCAAAAATATTTTTTGGAAATTTATT-TTTCTTTTAA
* * *
295051 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAGT-CTCTTT-GAAATTTA------TTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTTTCTTTTAA
* * * * * *
295106 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAATTTTTTATTTTATTTAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTAT-TTTTCTTTTAA
295169 GGAAAAT
1 GGAAAAT
295176 AGAATAATAA
Statistics
Matches: 316, Mismatches: 26, Indels: 62
0.78 0.06 0.15
Matches are distributed among these distances:
54 1 0.00
55 40 0.13
56 6 0.02
57 1 0.00
58 17 0.05
59 15 0.05
60 15 0.05
61 82 0.26
62 56 0.18
63 29 0.09
64 40 0.13
65 2 0.01
66 1 0.00
68 11 0.03
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (62 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAA
Found at i:295207 original size:25 final size:23
Alignment explanation
Indices: 295178--295259 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 23
295168 AGGAAAATAG
295178 AATAATAAAACAAAAAATAAATAAA
1 AATAA-AAAA-AAAAAATAAATAAA
* * *
295203 AATAAATAAATAAAATAAAGAAA
1 AATAAAAAAAAAAAATAAATAAA
*
295226 AGTAAAAATATAAAAAATAAAATAAA
1 AATAAAAA-A-AAAAAAT-AAATAAA
*
295252 GATAAAAA
1 AATAAAAA
295260 GAATATTAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
23 18 0.40
24 4 0.09
25 11 0.24
26 12 0.27
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (23 bp):
AATAAAAAAAAAAAATAAATAAA
Found at i:295211 original size:14 final size:13
Alignment explanation
Indices: 295191--295251 Score: 59
Period size: 14 Copynumber: 4.2 Consensus size: 13
295181 AATAAAACAA
295191 AAAATAAATAAAAAT
1 AAAA-AAAT-AAAAT
*
295206 AAATAAATAAAAT
1 AAAAAAATAAAAT
295219 AAAGAAAAGTAAAAAT
1 AAA-AAAA-T-AAAAT
295235 ATAAAAAATAAAAT
1 A-AAAAAATAAAAT
295249 AAA
1 AAA
295252 GATAAAAAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
13 10 0.25
14 13 0.32
15 5 0.12
16 10 0.25
17 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:295248 original size:30 final size:30
Alignment explanation
Indices: 295171--295257 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
295161 TATTTAAAGG
* * * *
295171 AAAATAGAATAATAAAACAAAAAATAAATA
1 AAAATAAAAAAATAAAATAAAGAATAAATA
* *
295201 AAAATAAATAAATAAAATAAAGAA-AAGTA
1 AAAATAAAAAAATAAAATAAAGAATAAATA
295230 AAAATATAAAAAATAAAATAAAG-ATAAA
1 AAAATA-AAAAAATAAAATAAAGAATAAA
295258 AAGAATATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
29 11 0.23
30 36 0.77
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (30 bp):
AAAATAAAAAAATAAAATAAAGAATAAATA
Found at i:295256 original size:18 final size:17
Alignment explanation
Indices: 295189--295259 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 17
295179 ATAATAAAAC
*
295189 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAGAT
295206 AAATAAATAAAATAAAG--
1 AAA-AAAT-AAATAAAGAT
* *
295223 -AAAAGT-AA-AAATAT
1 AAAAAATAAATAAAGAT
295237 AAAAAATAAAATAAAGAT
1 AAAAAAT-AAATAAAGAT
295255 AAAAA
1 AAAAA
295260 GAATATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
15 8 0.20
16 2 0.05
17 5 0.12
18 14 0.34
19 7 0.17
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAAAATAAATAAAGAT
Found at i:295270 original size:27 final size:28
Alignment explanation
Indices: 295200--295273 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 28
295190 AAAAATAAAT
*
295200 AAAAATAAATAAATAAAATAAAGAAAAG
1 AAAAATATATAAATAAAATAAAGAAAAG
*
295228 TAAAAATATAAAAAATAAAATAAAGATAAA-
1 -AAAAATAT-ATAAATAAAATAAAGA-AAAG
*
295258 AAGAATAT-TAAATAAA
1 AAAAATATATAAATAAA
295274 CCTAATCTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 7 0.18
29 14 0.36
30 15 0.38
31 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (28 bp):
AAAAATATATAAATAAAATAAAGAAAAG
Found at i:296242 original size:28 final size:29
Alignment explanation
Indices: 296194--296264 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
296184 TAATTAGAAC
* * *
296194 AGATAAATAAAAAAAATAGATATATTA-T
1 AGATAAATAAAAATAACAGATATATAATT
296222 AGGATAAA-AAAAATAACAGATATATAATT
1 A-GATAAATAAAAATAACAGATATATAATT
296251 AGATAAATAAAAAT
1 AGATAAATAAAAAT
296265 GCAAAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 23 0.62
29 14 0.38
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.25
Consensus pattern (29 bp):
AGATAAATAAAAATAACAGATATATAATT
Found at i:296280 original size:9 final size:8
Alignment explanation
Indices: 296268--296317 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 8
296258 TAAAAATGCA
296268 AAAATAAAT
1 AAAAT-AAT
296277 AAAAT-AT
1 AAAATAAT
296284 AAAATAAT
1 AAAATAAT
296292 --AATAAT
1 AAAATAAT
296298 AATAATAAT
1 AA-AATAAT
*
296307 ATAATAAT
1 AAAATAAT
296315 AAA
1 AAA
296318 TATATAACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
6 6 0.17
7 7 0.20
8 10 0.29
9 12 0.34
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
AAAATAAT
Found at i:296294 original size:3 final size:3
Alignment explanation
Indices: 296274--296316 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
296264 TGCAAAAATA
296274 AAT AA- AAT -AT AA- AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
296317 ATATATAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 8 0.22
3 28 0.78
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:296310 original size:20 final size:20
Alignment explanation
Indices: 296274--296338 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
296264 TGCAAAAATA
*
296274 AATAA-AAT-ATAAAATAAT
1 AATAATAATAATAATATAAT
296292 AATAATAATAATAATATAAT
1 AATAATAATAATAATATAAT
296312 AATAAATATATAACT-ATATAAAT
1 AAT-AATA-ATAA-TAATAT-AAT
296335 AATA
1 AATA
296339 TACATATAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 5 0.12
19 3 0.08
20 12 0.30
21 4 0.10
22 9 0.22
23 7 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (20 bp):
AATAATAATAATAATATAAT
Found at i:296336 original size:31 final size:27
Alignment explanation
Indices: 296274--296349 Score: 79
Period size: 31 Copynumber: 2.8 Consensus size: 27
296264 TGCAAAAATA
296274 AATAA-AATATAA-AAT-AATAATAAT
1 AATAATAATATAATAATAAATAATAAT
296298 AATAATAATATAATAATAAATATATAACT
1 AATAATAATATAATAATAAATA-ATAA-T
296327 ATATAAATAATATACAT-ATAAAT
1 A-AT-AATAATATA-ATAATAAAT
296350 CTATTCTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
24 5 0.11
25 7 0.16
26 3 0.07
27 4 0.09
28 4 0.09
29 2 0.05
30 2 0.05
31 15 0.34
32 2 0.05
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (27 bp):
AATAATAATATAATAATAAATAATAAT
Found at i:296345 original size:23 final size:21
Alignment explanation
Indices: 296270--296347 Score: 63
Period size: 23 Copynumber: 3.6 Consensus size: 21
296260 AAAATGCAAA
*
296270 AATA-AATAAAATATA-AAAT
1 AATATAATATAATATATAAAT
296289 AATAATAATAATAATA-ATATAAT
1 AAT-ATAAT-ATAATATATA-AAT
*
296312 AATAAATATATAACTATATAAAT
1 AATATA-ATATAA-TATATAAAT
296335 AATATACATATAA
1 AATATA-ATATAA
296348 ATCTATTCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.06
20 1 0.02
21 4 0.09
22 12 0.26
23 24 0.51
24 3 0.06
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATAATATAATATATAAAT
Found at i:296448 original size:28 final size:28
Alignment explanation
Indices: 296394--296451 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
296384 TACATATATT
* * *
296394 AATACATAATAATAATAATAAATAAAAA
1 AATACATAATAATAAAAAGAAAAAAAAA
296422 AATACATAA-AATACAAAAGAAAAAAAAA
1 AATACATAATAATA-AAAAGAAAAAAAAA
296450 AA
1 AA
296452 GAAAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (28 bp):
AATACATAATAATAAAAAGAAAAAAAAA
Found at i:296460 original size:12 final size:12
Alignment explanation
Indices: 296436--296461 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
296426 CATAAAATAC
296436 AAAAGAAAAAAA
1 AAAAGAAAAAAA
296448 AAAAGAAAAAAA
1 AAAAGAAAAAAA
296460 AA
1 AA
296462 TAATACAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:296513 original size:20 final size:21
Alignment explanation
Indices: 296490--296530 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
296480 GGCCTTACCC
296490 ATTTGGGCCAGG-CCCAATTG
1 ATTTGGGCCAGGACCCAATTG
*
296510 ATTTGGGCCTGGACCCAATTG
1 ATTTGGGCCAGGACCCAATTG
296531 GGTGTCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (21 bp):
ATTTGGGCCAGGACCCAATTG
Found at i:297822 original size:26 final size:26
Alignment explanation
Indices: 297745--297822 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
297735 TTGACTTAGA
* *
297745 CATACGGAGTTCATTCCAAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
297771 CATACGGAGTTCATTACCATTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
297797 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
297823 ATCGAACCGG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:298707 original size:26 final size:26
Alignment explanation
Indices: 298668--298720 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
298658 GTTGACTTAG
* *
298668 GCATACAAACTTCATTCCTAGTCTAA
1 GCATACAAACTTCATTCCCAATCTAA
* *
298694 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAAACTTCATTCCCAATCTAA
298720 G
1 G
298721 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.28
Consensus pattern (26 bp):
GCATACAAACTTCATTCCCAATCTAA
Found at i:299107 original size:902 final size:897
Alignment explanation
Indices: 296811--299299 Score: 3253
Period size: 924 Copynumber: 2.7 Consensus size: 897
296801 CCCGGTCGCC
* * ** * *
296811 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGGATACCGAGTTCATTCCAAGTCTAAGCACACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCC-AGTCTAAGCATACA
** * * * * *
296876 GAGTTCATTCCCAGTCTAAGATCGGATTGGACTAAGGGTTTCGGCCGCACATGCTAGGCTCGAGC
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
296941 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
130 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * *
297006 TGGCGGCATTGTTGTTCCGGCGATCGGGGGGCCGGGAGGGTGCGCGCACATAATGTGCGATGGGT
195 -GGAGGCATTG-GGTTCCGGCGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGT
*
297071 GCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
257 GCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
297136 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
322 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
297201 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
387 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCC
* * *
297266 AACAAAAATACAAGGATCACT-TCTTCCAAGTTT-GGGCCAAAACTCATTCTGAAAAAA-TTTAA
452 AACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * ** *
297328 AAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGA
516 AAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
297393 AACTTCGAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCAT
581 AACTTC-AGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATTGGCAT
* * *
297458 GCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGGCTTGCGCATCCCG
644 GCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTACGCATCCCA
* * * * * *
297523 TCTTTCTGGCCGATGTTGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCA
709 TCTTTCTGGCAGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCA
** * * * **
297588 TACGGAGTTTTTTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGTAGCAAGATCGACAGCA
774 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAACAAGGGTTACGACAGCAAGATCGACAGCA
** * *
297653 CGCAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAG
839 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
297712 CACCCGCATGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCATTCCAAGTCTAAACATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A--C---A-A-AC-
* * *
297777 GAGTTCATTACCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGT
43 ---TTCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGT
* * *
297842 TGCGGCAGCACATGCTGGGCTCGGG-ATGTGCTGGTG-TCACATTTTTCTTCACCGGGGTACCAT
104 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCATCGGGGCACCAT
* * * *
297905 CACCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTGGGGCTCCGGCAATCGGGCGGGCGGGGG
168 CGCCGGAGCATCGTCGGAGAACCTGA-CGGAGGCATT-GGGTTCCGGCGATCGGG-GGGCCGGGG
* *
297970 GGTGTGCACGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTCGCCCCCTATCTCT
230 GGTGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCT
*
298035 CATCAAACCT------CTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
293 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
298094 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGA
358 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
298159 GTTTTTAACTGAATTTTTTTGTGCATGG-CAATAAAAATACAAGGATCATGTCCACCAAGTTTGG
423 GTTTTTAGCTGAATTTTTTTGTGCA-GGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * ** *
298223 GGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCGCAAACCAAAAAAAGTTTCAAAAATTGTAA
487 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGA
* * *
298288 AAAATAGAAAACGAGTCGTCTTGCCAAGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
552 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA-GTGAAGGCTTAAGGGACCATTGTATGAA
* * *
298353 TTTACAAGCCATCAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
616 TTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACCA
* *
298418 CCCTATCGATCCACGGCTTACGCATCCTATCTCTT-TGGCATACGTAGTGCCCGCCTGCCCGCCC
680 CCCTATCGATCCACGGCTTACGCATCCCATCT-TTCTGGCAGACGTAGTGCCCGCCTGCCCGCCC
* * * * *
298482 GTCCGCTTGTTTCGTTGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AA
744 GCCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * ** * * *
298546 ATAGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGTGGACCCGATCGATCCCCGGCTTGCT
809 ACA-AGGGTTACGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
*
298611 CATCCTGCCCCTCTGGCCGGCTGAG
873 CATCCCGCCCCTCTGGCCGGCTGAG
* *
298636 CGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAAACTTCATTCCTAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCC-AGTCTAAGCATACA
* * *
298701 GAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * **
298766 ATGTGCTGGTGCTGCAGTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAT
130 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-
* *
298831 CGGTGGCATTGGGATTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
194 CGGAGGCATTGGG-TTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
298896 CTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
258 CTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
298961 AAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
299026 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTTGTAGGCC
388 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAGGCC
* * * *
299091 AACAAAAATA-AAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTTCGAAAAAATTTTAAA
452 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
299155 AAATCCCAAACCGTAAAAAGTTTCAACAATTGTGAAAAATAGAAAACGAGTCATTTTGCCATGAA
517 AAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
*
299220 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
582 ACTTCA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATG
*
299285 TAGAAATATGAAGAT
645 CAGAAATATGAAGAT
299300 CCCGGCTTGC
Statistics
Matches: 1374, Mismatches: 161, Indels: 105
0.84 0.10 0.06
Matches are distributed among these distances:
896 63 0.05
897 2 0.00
898 95 0.07
899 74 0.05
900 1 0.00
901 23 0.02
902 302 0.22
903 21 0.02
904 1 0.00
907 3 0.00
909 2 0.00
910 1 0.00
912 2 0.00
913 3 0.00
915 1 0.00
916 2 0.00
918 3 0.00
921 1 0.00
922 163 0.12
923 27 0.02
924 348 0.25
925 6 0.00
926 83 0.06
927 82 0.06
928 65 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAACTTCATTCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACG
GAGGCATTGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTACGCATCCCATCTTTCT
GGCAGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGAAACAAGGGTTACGACAGCAAGATCGACAGCACGCAGAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:300272 original size:26 final size:26
Alignment explanation
Indices: 300235--300287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
300225 GTTGACTTAG
300235 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
300261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
300287 G
1 G
300288 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:301644 original size:26 final size:26
Alignment explanation
Indices: 301615--301667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
301605 GTTGACTTAG
*
301615 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
301641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
301667 G
1 G
301668 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:302545 original size:26 final size:26
Alignment explanation
Indices: 302515--302567 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
302505 GTTGACTTAG
302515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
302541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
302567 G
1 G
302568 ACCCGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:302879 original size:900 final size:903
Alignment explanation
Indices: 300483--303946 Score: 4528
Period size: 901 Copynumber: 3.8 Consensus size: 903
300473 TTGGCACCCT
* * * *
300483 ATCCCGTCTCTCTGGTCGACGTAGTGCCC-CC-CCGTCCGCTCG-TCGTTTCGTCGGTTGGCTTA
1 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * *
300545 GGTATACGGAGTTCATTCCCAATCTAAGATCGGACTGGA-CAAGAGTTTGGCAGCAGGGATCGAC
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGAGTTCGGCAGCA-GGATCGGC
* * * * * *
300609 AGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTTTGGTCAGCTGAGCA
130 AGCACACAGAGGAGGACCCGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
300674 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACTGA
195 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * **
300739 GTTCATTCACGAGTCTAAGCATTGGACCAAACCGCAGGGTTTACGGCAGCACATGCTAGGCTC-A
260 GTTCATTC-CCAGTCTAAG-ATCGGACCGGACCG-AGGG-TTACGGCAGCACATGCTAGGCTCGA
* * *
300803 GGCATGTGCT-GTGCGCACATTTTTCCTCGTC--GGCACCATCATCGGTAAAGCATCG-TCGGAG
321 -GCATGTGCTGGTGC-CGCATTTTTCTTCGTCGGGGCACCATCGTCGG---AGCATCGATCGGAG
* * *
300864 AAACCTGACCTAC-GCATT-GGGTT-CGACGATCGAGGTGCC-GGGGTA-GTGTGCACACATGAT
381 AAA-CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGG-AGGTGTGCACACATGAT
* * * *
300924 GTGTGAT-GGTGCTGGCTACTTGGCCC-TATATTAGCCCCCGTATCCCTCATCAAAGCCTTGAGA
444 GTGCGATGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCC-TATCCCTAATCAAA-CCTCGAGA
* *
300987 ACTCACACCCCCTTAAAGAGGCATTTTGAGATTTTACAGGTTTGCTGTCAGTAGCCA-TAAAGTC
506 ACTCACACCCCCTTAAAGA-GCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
301051 TCTGAAAATGGGGACAC-TTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTACCTGA
569 TCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * **
301115 A-TGTTTTGTGCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTT-GGATCAAAAACTCC
633 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCC
* * * **
301178 TTCCGAAAAAAATTTT-AAAAATCTCGAGCCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
697 TTCCGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
301242 CGAGTCGTCCTGCCATGAAACTTCACGTCAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCA
762 CGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
301307 TAAAAATCGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
827 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
301372 CACGACTTGCGC
892 CACGACTTGCGC
* * * *
301384 ATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCCCACTCGTTTCGTCGGTT
1 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-ACCGCCCGCCCG----CTCGTTTCATCGGTT
*
301449 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CAGACCAAGAGTTCTGGCAGCAG
60 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACCAAGAGTTC-GGCAGCAG
* ** * * * * *
301513 GATCGGCAGAATGCAGAGGAGGACCCGGCCGATCCCCGGGTTACGCATCTCGCCCCTCTGGCTGA
123 GATCGGCAGCACACAGAGGAGGACCCGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGG
* * * * * *
301578 CTGAGCGCCCGCACGCTTGTTCCGCGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGC
188 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * **
301643 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTACCCT
253 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCT
*
301708 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAA
318 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGATCGGAGAA
* * * *
301772 CCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTGCGCACATGATGTG
383 ACTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCTGGGGAGGTGTGCACACATGATGTG
* ** * * * *
301837 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTTGAGAACCCAT
447 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCAC
* *
301902 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
512 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
301967 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
577 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* * * * *
302032 TGCACGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTT-GGGCCAAAAAGCCTTTCG-AAAA
642 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
*
302095 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC-TCGAAAAATAGAAAACGAGTCATC
707 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT-GAAAAATAGAAAACGAGTCATC
302159 TTGCCATGAAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
771 TTGCCATG-AAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
302224 GCATTGGCATGCAGAAATATGAAGATATGCGTAAACCCACCTACCACCCTATCGATCCATGACTT
835 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
302289 GCGC
900 GCGC
* *
302293 ATCCCGTCTCTCTGGCCAACGTAGTGCCCG-C-CCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
1 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
** * *
302356 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCA-CAGGATCGCC
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGAGTT-CGGCAGCAGGATCGGC
** * * **
302420 AGCACGTAGAGGGGGACCCGGCCGATCCTCATCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
130 AGCACACAGAGGAGGACCCGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
302485 CCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
195 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
302550 GTTCATTCCCAGTCTAAGACCCGACCGGACCCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCA
260 GTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCA
* * *
302615 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCAT-GATCGAAGAAACTGAC
324 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGATCGGAGAAACTGAC
* * *
302679 CGACGGCATTGGGGTTCCAACGATCGGGGGGCCTGGGG-GGTGTGCGCACATGATGTACGATGGG
389 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGAGGTGTGCACACATGATGTGCGATGGG
* *
302743 TGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCTTAATCAAACCTCGAGAACTCACCCCCCC
454 TGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
* *
302808 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
518 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
302873 ACTTTTTTCAAATGGT-ACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATG
583 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
*
302937 CC-ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAAAAATTTT
648 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAATTTT
* * * *
303000 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCATCTTGCCAT
713 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
303065 GAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
778 GAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
303130 ATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGTGC
843 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * *
303191 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCTGCCCGCCCGCTCGTTTCATCGATTGGCT
1 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCACC-GCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * * * ** *
303256 TAGGTATACGGAGTTCATTCCCAGTCTATGGTCAGACCGAACCGAGGGTTGCAACAGTAGGATCG
64 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGAGTT-CGGCAGCAGGATCG
* * * * ** * *
303321 GCAGCACATAGAAGG-GGATCTGGCCGATCCCCGGCTTGTGCATCCCGCCATTTTGGCCGGCAGA
128 GCAGCACACAG-AGGAGGACCCGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGA
* * **
303385 GCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGAATAAGCATAC
192 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
303450 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGAG
257 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAG
** * *
303515 CATGTGCTGGTGATGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATC-ATCGGAGAACCTG
322 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGATCGGAGAAACTG
* * * * * *
303579 ATCGGCGGCATTGAGGTTTCGACAATCGGGGGG-CTGGGG-GGATGTGCACACATGATGTGTGAT
387 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGAGG-TGTGCACACATGATGTGCGAT
303642 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCAA-CAAACCTCGAGAACTCACAAC
451 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-AATCAAACCTCGAGAACTCAC-AC
* *
303705 CCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTG-AATGG
514 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
303769 GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
579 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
* ** * *
303834 CATACCAA-AAAACATACATTGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCTGAAAAAA
644 CATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * *
303898 ATTTTACAAAATCCTGAACCGCAAAAAGATTCGAAAATCATGAAAAATA
708 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
303947 TGAAGATGTA
Statistics
Matches: 2272, Mismatches: 239, Indels: 102
0.87 0.09 0.04
Matches are distributed among these distances:
898 172 0.08
899 177 0.08
900 315 0.14
901 332 0.15
902 270 0.12
903 196 0.09
904 3 0.00
905 27 0.01
906 17 0.01
907 104 0.05
908 137 0.06
909 252 0.11
910 110 0.05
911 153 0.07
912 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGAGTTCGGCAGCAGGATCGGCA
GCACACAGAGGAGGACCCGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGATCGGAGAAACTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGAGGTGTGCACACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
Found at i:306924 original size:25 final size:25
Alignment explanation
Indices: 306890--306937 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
306880 GACTTAGGCT
* *
306890 TACGGAGTTCATTCCAGTCTAAGCA
1 TACGAAGTTCATCCCAGTCTAAGCA
306915 TACGAAGTTCATCCCAGTCTAAG
1 TACGAAGTTCATCCCAGTCTAAG
306938 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
TACGAAGTTCATCCCAGTCTAAGCA
Found at i:308129 original size:905 final size:903
Alignment explanation
Indices: 305279--322091 Score: 14527
Period size: 905 Copynumber: 18.6 Consensus size: 903
305269 ACCTGGCCGG
305279 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
305344 CTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
305409 GTAGCCAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
305474 GAGTTTTTACCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
305539 GGTCCAAAACTCCTTCTGAAAACATTTTAAAAAATCTCGAACCACT-AAAAGTTTCAAAAATCAT
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCAT
305603 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
305668 AATTTACAAGCCATAAAAATGG---TGGCACGGAGAAATATGAAGATGTGCCTAAATCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** **
305730 AACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCCGCCCTT
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-CG-CCCGCCCGC
* * *
305795 CCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCA
518 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * ** * * *
305860 GACCGAGGGTGGC-GCAGCAGGATCGGTAGCACATAGAGTTGGACTCGTTCAATTCCCCGGCTTG
583 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGA-TCCCCGGCTTG
* * *
305924 CGCAATCCCGCCCCTCTGGCCGGCTGAGCGCTCCGAACG-TC-ATTC-GTAGGTTGACTTAGGCA
647 CGC-ATCCCGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCAGTGGGTTGACTTAGGCA
* *** * **
305986 TACAGAGTTCATTCCCAGTCTAAG-AGGTGCAG-TCATTCCCAGTCTAAGAT-AAACCAGGACCG
710 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCG
* *
306048 AGGGTGATGCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG-GCCGCAATTTTCTTCGT-CGG
774 AGGGT--TG-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGC-G
* * * * **
306111 AGGCAACATCG-CGAAGCATCGTCGGAGAACCT-ACCGGCGCCAATGGGGTTCCGGTGATC-GGG
835 AGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
306173 GGCC
900 GGCC
* *
306177 GGGGGAGTGTGCGCACCATGATGTGCGAT--GTGCTCGGTACGTGGCCCCCTTTATGTTGTG--C
1 GGGGG-GTGTGCGCA-CATGATGTGCGATGGGTGCT-GGTACTTGG--CCC-TTATATTG-GCCC
* * ** *
306238 CCTATCCATCATTCAAAATCTTAAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
59 CCTATCCCTCA-TC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
306303 TTGCTGCCAGTAGCCACTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
122 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
306368 GTACACTACGAGTTTTTAGCTGAAATTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTA
187 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
306433 CCAAGTTTCGGGCCAAAAATCC-TCCTGAAAAAATTTTAAAAAATCCCGAATCGT-AAAAGTTTC
252 CCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
306496 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA-GCTTAAGGGAC
316 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
306560 CATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAA
381 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* **
306625 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCTAT
446 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GC
* * *
306690 CCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTATGA
510 CCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** * **
306755 TTGGACCAGACCAAGGGCTGCGGCAGTAGGATCAACAGCA-ACCTTGA-GGGGACCCGACCGATC
575 TCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACA-C-AGAGGGGGACCCGGTCGATC
** *
306818 CCCGGCTTAAGCATCCCGCCCCTGCTGGCCGGCTGAGCGCCCGCACGCTTGTTTC-GTGGGTTGA
638 CCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGA
* *
306882 CTTAGGCTTACGGAGTTCATT-CCAGTCTAAGCATACGAAGTTCA-TCCCAGTCTAAGATCGGAC
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * *
306945 CGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTTGGCCAAGTGCTGAT-ACGTATTTTTTCTTTC
767 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTC-TTC
* * ** * *
307009 GT-CGAGGCACCATCGCCGG-GCATCGTCGGATAAACCT-AACGGCGATATTAGGTTTCCGACGA
830 GTGCGAGGCACCATCGCCGGAGCATCGTCGGA-GAACCTGACCGGCGGCATTGGGGTTCCGACGA
307071 TCGAGGGGGCC
894 TCG-GGGGGCC
* * * * * *
307082 AGGGGGAGTGTGTGCACATGATGTACGATGGGTTACTGGTTCTTGGCCCTTATATTGGCCGCTTA
1 -GGGGG-GTGTGCGCACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
307147 TCCCTCATCAAACCCCGAGAACTCACACCCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
63 TCCCTCATCAAACCTCGAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
307212 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
127 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
307277 CTTCGAGTTTTTACCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
192 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
307342 TTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAAT
257 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
307407 TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
322 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
307472 ATGAATTTACAAGCCATAAAAATTGCATTGGAAGGTAGAAATATGAAGATGTGCCTAAACCCA-C
387 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
307536 AACCCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAACCGACGTAGTGCCGTCTGCCC
452 TA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCC
* * * * * *
307601 ACCCGCCTACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGGTTGGAC
516 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * ** * * ***
307666 AAGACTGAGGCCTACGGCAGTAGGATCGGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTT
581 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * * *
307731 ACGCATCCCACCCCTCTGGCCAGTTGAGCGCCCGTACGCTCGTTTCAG-GGGTTGACTTAGGCGT
646 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCAT
* *
307795 ACGGAGTTCATTCCCAGTCTAAGCATTATGGAGTTCA-TCCCAATCTAAGATCGGACCGGACCGA
711 ACGGAGTTCATTCCCAGTCTAAGCA-TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * * * *
307859 CGGTACTGTGGTAGCCACATGCTAGGCTTGGGCCAAGTGCTGGTACCACA-TTTTCTTCGTGCGA
775 GGGT--TGCGGCAG-CACATGCTGGGCTCGGG-CATGTGCTGGTGCCGCATTTTTCTTCGTGCGA
* * * * *
307923 GG-ACCATTGCCGGAGGCATCGTCGGATAACCTGACCGGCCGGTATT-AGGTTCCGGACAATCGG
836 GGCACCATCGCCGGA-GCATCGTCGGAGAACCTGACCGG-CGGCATTGGGGTTCC-GACGATCGG
307986 GGGGCC
898 GGGGCC
* * * * *
307992 GGGGGGTGTGCGCACATGATGTACGATGGGTG-TGGATACGTGGGCCTTATATTGGACCGCTTAT
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG-TACTTGGCCCTTATATTGG-CCCCCTAT
*
308056 CCCTCATC-AACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTGAGA-TTTACAGAGGTTGCTG
64 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTG
* *
308118 CCAGTAGCCATTAAAAGTATCTGAAA-GGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACA
128 CCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
308182 CTTCGAGTTTTTAGCTGAATTTTTTTGCGCTTGCCCACAAAAATACAAGGATCACGTCTACCAAG
192 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
308247 TTTGGGACCAAAACACCTT-CGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
257 TTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
** *
308311 TCGGGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
321 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
308376 TATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTACCTAAACCCAC
386 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
308441 CTACCAGCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCTGCC
451 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCC
* * *
308506 CGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGAT
515 CGCCCGCCT----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * * *
308571 CAGACCAAACCAAGGGTTGCGGAAAAAAGATCAGCAGCACACAGAAGGGGACCCGGGT-GATCCC
576 CGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC-GGTCGATCCC
* ** * * * *
308635 TGGCTTGCGCATCTTGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTCATTTCA-TAGGTTGACTT
640 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTT
* * *
308699 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * ** *
308763 ACTGATGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTC-ACCA
770 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCG
* * * * * * * *
308827 AGGCACCAACACCGGAGCATCGTCAGAGAACCTAACTGACGGCATTGGGGTTCCCACGATTGGGG
835 AGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
308892 GGCC
900 GGCC
* * * **
308896 GGGGGTTGCGCGCACATGATGTACGACAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
308961 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
309026 GTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
309091 GATTTTTTAGCTG-ATTTGTTTTGTGCATGCCAAGAAAAATGCAAGGATCACGTCTACCAAGTTT
196 GAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
309155 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
260 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
309220 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
309285 AATTTACAAGCCATAAAAATGGCATTCGCACACAAAAAAATGAAGATGTGCCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
309350 CACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCGCT
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGCC
* * * * *
309415 CGCCCGTTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
519 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * **
309480 ACCGAGGGTTGCGGCAGTAGGATTGGCAGCACACAGAGGGGGACTCGACCGATCCCCGGCTTGCG
584 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * * *
309545 CATCCCGCCTCTCTGGCCGACTAAGCGGCCGCACGCTCATTTC-GTGGGTTGACTTAGGCATACG
649 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACG
*
309609 GAGTTCAATT-CCATTCTAAG-AT-C-G-G---------A--CT---A---GACC-G---G-GGG
714 GAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * *
309647 TTGTGGCAGCACATGCTGGGCTTGGCCATGTGCTGGTGCCACATTTTTCTTCGCTAG-G-GGCAC
778 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-T-GCGAGGCAC
** * * * * *
309710 CATCATCGGAGCATCGTCAGAGAACATGACCGGTGGCATTGGAGTTCC-AGTGATCGGGGGGCC
841 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCC
* * *
309773 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
309838 CTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
309903 GCAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
309968 GAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACAAAGTATG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * *
310033 GGACAAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTATTC-AAAATCTT
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT-TTCAAAAATCAT
*
310097 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
310162 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGGGCCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
310227 CACCC-ATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCG--C
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCC
* * * *
310285 -CC-GCACGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGA
520 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * *** * *
310348 TCGAGGGTTGCAGCAGCAGGATCGACAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGT
585 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
310413 ATCCCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTT-AATGGGCTGACTTAGGCATACGG
650 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACGG
* *
310477 AGTTCATTCCC-G-GT---C-TA---AG---------A-TC--AGATCGGA-CTGA---A-GGTT
715 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * ** * ** *
310516 GCGGCAGCACGTGCTGGTCTCAAGCATGTGCTGGTGCCGCCTTTTTCTTC-ACCGAGGCAGCATC
780 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCATC
* * * * * * *
310580 ACTGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTTCGATGATCAGGGGGCC
845 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* *
310639 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
310704 CTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
310769 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
310834 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** ** *
310899 GGGCCAAAACTTCATCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTTGAAAATCATA
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
310964 AAAAATAGAAAACGAGTCATCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
326 AAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
311029 AATTTACAAGCCATAAAAATGGCATTTGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
311094 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCACCCGTACGC
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CC-GCC---CGC
* * * *
311158 CCGCCCGTCC-GCTTGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
514 CCGCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * ** ** * *
311222 GACCAGATCAAGGTTTGTGGCAACAGGATCGATAGCATGCAGAGGGGGACCCGGCCGATCCCCGA
578 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGG
* * * * * * * ** * ** **
311287 CTTGCGCATCCCGTCTCTCTGGTCGGC-GTAGTGCCCGCCCACCCGGTCGCCCGCCCGCCTG-CT
643 CTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTC-GT-TTCAG-TGGGTTGACT
* * * ** * * *
311350 T--G--TTC--CG-TCGGTTGGC--T-TAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACC
704 TAGGCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * ** **** *
311405 GAATCGAGGGTTACGGCAGCAGGAT-C-GGTAGCAC--ACATAG-G-TGGACCCG-ACCGATCCT
768 GGACCGAGGGTTGCGGCAGCA-CATGCTGG--GCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTT
* ** * * * * ** * * *
311463 CG-GCTTGCGG-ATCCCGCCCCTCTG-GC--CGACTGAGCGCC-AACAC-GC-TCATTTCGTTGG
829 CGTGC--GAGGCA--CCATCGC-CGGAGCATCGTCGGAGAACCTGAC-CGGCGGCA-TT-G-GGG
* * * ** *
311520 TTGACGTAGGCATTCGGAGTTCAT
885 TT-CCG-ACG-A-TCGGGGGGC-C
***** * ** * * * ** * * ** **
311544 TCCCAGTCTAAGCATATGAAGTTC-ATTCCCAGT-CTAAG-A-TCGGACCGGACCGAGGGTTGCT
1 GGGGGGTGTGCGCACATGATGTGCGA-T--GGGTGCT-GGTACTTGG-CC---CTTA-TATTG--
* * ** *** ** **** * * * *
311605 GCAGCAC-ATGCCGGGCTCGGGCATGTGCT-G-GTGCTGCATTTTTCTCTGCTGAGGCACCATCG
55 GC-CCCCTAT-CC---CTC-ATCA-AACCTCGAGAACT-CA-CACCCCCT--TAAAG-AGCAT--
** ** **** * *** * ** *** *
311667 CCGAAGCATCGT-C-GGAGAACCTGACCGGTAG-CATTGGCGT-TCCGGCGATCGGGGGGGC--C
106 TTG-AG-ATTTTACAGG-TTTGCTG-CCAGTAGCCATTAAAGTGT-CTGAAAT-GGGGACACTTT
******* * * ** * ** * * ** * * *
311726 GGGGGGGT-GTGCGC-ACATGATGTGCGA-TGGGGGCTGGTTCTTGGC--CCTTATATTG-GC-C
165 TTTCAAATGGT-CACAAAATCTTGTAC-ACTTCGAG-T--TT-TTAGCTGAATTTTTTTGTGCAT
* * **** * * ****** * * * *
311784 CCCTATCCCTCAT-CAA--A-C-C-TC-ACAAACTCACACCCCCTTAAAGA-GCATT-TG---AG
224 GCC-AACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCC--AAA-ACTCCTTCCGAAAAA
**** * * * * ** * * * * ***** * *
311837 ATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTTAAAT-GTGGACACT-TTTTTCAAAT
284 ATTTTA-AAAAAT-C--CC-G-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * ** * ** * * *
311899 GGTC---ACA--AAATCTTGTACACTTCG-AGTTTTTAGCTTA--ATT-T-T--TTTGTGCATGC
343 CGTCTTGCCATGAAA-C-T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGC
* * * * ** ** * * * ** ** *
311952 CAACAAAAAT-ACA-AGG-A-TCACG-TTTACCAAGTTTGGGCCCAAAACTCTTTCA-AAAAAAT
401 C-ATAAAAATGGCATTGGCACGCA-GAAATATGAAG-ATGTG-CCTAAAC-C---CACCTACCAC
** *** ** * **** * ** * * ** * ****** **
312011 TTTAAAAAATCTCA-AAC---CGAAAAAAGTTTCAAAAATCG-TGA-AAAATAAAAAACGAGTCG
458 CCT-ATCGATC-CACGGCTTGCGCATCCCGTCTC---TCTGGCCGACGTAGTGCCGCCCG-CCCG
** ** * ** * * ** * * *
312070 TCTTGCCATGAAAC--TTC-ACGTGAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATA
517 -CCCGCC-TG-CTCGTTTCGTCG-GTTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-TA
* * *** * *** ** ** * ****** **
312130 GAAAT-TGAATTGGCACGCAGAAAT-ATG-A--A-GAT-GTGCATAAACCCACCTACCG-CCCTA
572 -AGATCGGACCAGAC-CG-AGGGTTGCGGCAGCAGGATCG-GCA-GCACACAGAGGGGGACCCGG
* * * * *
312187 TCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGTGTGCCCGCCCGC
632 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC----TG---A-------G--CGCCCGC
* * * * * *
312252 CCGC-CGCTTGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCA
681 ACGCTCG--T-TTCAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-C-
** *** * ** * ** ** *
312316 GATTGAGGTTTGTGATAGTAGGAT-TGACAGCATGCAGAGGGGGACCTAGCCAATCCCCGGCTTG
739 G---GA-GTTCAT--TCCCA-G-TCT-A-AG-AT-CGGA-CCGGACCGAG--GGT-TGCGGC-AG
* * * ** * * * * * ***
312380 CGCATCCCGCTCCTCTGGTCA-GT--TGAGCGCCCGCACGTTCGTTTCAT-GGGTTGACTTAGCC
787 CACATGCTG-GGCTC-GGGCATGTGCTG-GTG-CCGCA--TT--TTTCTTCGTG-CGAGGCA-CC
* * * * *** * * * *** * * **
312441 AT--ACAGAGTTCATTCATAGTCTAAGCAT-A-CGGAGTTCATTCCCAG-T-CTATGATCAGACC
842 ATCGCCGGAG--CA-TCGTCGGAGAA-CCTGACCGGCG-GCATT-GGGGTTCCGACGATC-G-GG
**
312500 GGAAC
899 GGGCC
** * * * * * * * * ** * *
312505 GAAGGTTGCGGTAGCACATGCTAG-GCTCAAGCAGGTGCTGGT--GTCGCATTTTTCTCCGTGGG
1 GGGGGGTG-TG-CGCACATGAT-GTGC-GATG--GGTGCTGGTACTTGGCCCTTATAT---T--G
* * ** * * * ** ** * ** ** *
312567 GGCACC-ATCACCAGAGC-ATCGTCGGAGAAC-CTGA-CCGGTGGCATTG-GGGTTTCGATGATC
55 GCCCCCTATC-CCTCATCAAACCTC-GAGAACTCACACCCCCT--TAAAGAGCATTT-GA-GATT
*** * *** ** *** * * * * * * *
312627 GGGCGGGCCGGGGGGGTGTGCACGCATGATGTGCGAAGGGTGCTGGTACT-TGG-CCCTTATATT
114 TTACAGGTTTGCTGCCAGT--A-GC--CAT-T--AAAGTGT-CT-GAAATGGGGACAC-T-T-TT
** ** * * * *
312690 TTCCCCCTATCCCTCATCAAAACCTCG-AGAAC-TC-AGTCTCCCTTAAAGAGCATTTGAGATTT
166 TT---CAAAT-GGTCA-CAAAATCTTGTA-CACTTCGAGT-T---TT---TAGC---TGA-ATTT
** * * *
312752 TACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTTAAATGGGGA-CACTTTTTTTCAAATGGTC
214 T-----TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA---GGATCAC-----GTC------T-
* * * ** *** * ** * **** **
312815 ACAAAATTTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
251 ACCAAGTTTGGGGC-C-AAAACTCCTT--CCGAA-AAAATT-T---T----A-AAAAAT-C-CCG
* ** * * ** * ***
312880 ATCACGTTTACCAAGTTTGGGCCCAAAACTCTTTCGAAAAAATTTTAAAA--AATC-TCGAACCG
300 AAC-CG--TAAAAAGTTT-----CAAAAATC-AT-G-AAAAA-TAGAAAACGAGTCGTCTTGCC-
* * * *** * * * * *
312942 A-AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGA
352 ATGAAA--CTTC----A-CGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AA-TTTAC---A
* * * * ** * * *
313005 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGA
398 AGCCATAA---A--AATG---GCATTGGCACG-C--AGAAAT---A-T--GA---AG--ATGTG-
** * * *
313070 AGATGTACCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
440 -CCT-AAAC----CC-ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * ** *
313135 ACGTAGTGCCCGCCTGCCCGCCCGCCTGCCCGCTCGTTTCATCTATTGGCTTAGGCATACGCAGT
498 ACGTAGTG-CCGCCCGCCCGCCCGCCT----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * * * * *
313200 TCATTCCCAGTCTAAGATTAGACC-GAACCAAGGGTTGCGGAAGAAAGATTGGCAGCACACAGAG
558 TCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAG
* * ** * * *
313264 GGGGACCCGGGCGATCCCCAGCTTGCGCATCTTGCCCCTTTAGCCGGCTGAGCGCCCGCATGCTC
622 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
313329 ATTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
687 GTTTCAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
313393 AGTCTAAGATCGGACCAGACTGATGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
752 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
313458 TGCATTTTTCTTC--GCCAGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGACGGCATT
817 CGCATTTTTCTTCGTGCGA-GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
*
313521 GGGGTTCCGGCGATCGGGGGGCC
881 GGGGTTCCGACGATCGGGGGGCC
*
313544 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
313609 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
313674 GTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
313739 GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
313804 GGCCCAAAACT-CTTTCG-AAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTG
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
313867 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
313932 ATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
313997 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGT---GCCCGCCTG--C-
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCG
* * * * * **
314056 CC-GCTCGTTTCATCTGTTGGATTAGGCATACGCAGTTCATTCCTAGTCTAAGATTAGACC-GAA
521 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
* * * * * * * * *
314119 CCAAGGGTTGTGGAAGAAAGATCGACAGCACACAGAGGGGGACCCGGGCGATCCGCAGCTTGCGC
585 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
*** * * *
314184 ATTTTGCCCCTTTAGCCGGCTGAGCGCCCGCACGCTCATTTCA-TGGGTTGACTTAGGCATACGG
650 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACGG
* *
314248 AGTTCATTCCCAGTCTAAG-AT-C--AG---A---CCAGACT--GA-CGG---GTA-C---GG-T
715 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* *
314292 -----AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT--TGCCAGGGCACCAT
780 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGA-GGCACCAT
* * * * * *
314350 CACAGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGTC
844 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* * *
314410 GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCTCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
314475 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTA-AGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * **
314539 GTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
314604 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTC
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
314669 GGGCCAAAAATCCTGCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTC-AAAATCGT
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCAT
* * *
314733 GGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
314798 AATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGTTGTGCCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
314863 CACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT---GCCCGCCCGCCC
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCC
* *
314925 G--T--TCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGA
520 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * *
314986 CCGAGGGTTGCGGCAGCAGGGTTGGTAGCACACAGAGGGGCACCCGGTCGATCCACAGCTTCCGC
585 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
315051 ATCTCC-CCTCTCTGGCTGGTTGAGCGCCCACACGCTCGTTTC-GTGGGTTGAC-T-----T--G
650 ATC-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACG
*
315106 G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
714 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
315153 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGGCACCAT
779 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCAT
* ** * * * * *
315217 CGCTGGAGCATTATCGGAAAACCTGACGGGCAGCATTGGGGTTCCGATGATCGGGGGGTCG
844 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CC
* * * * * *
315278 GGAGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTAGTTGGCTCTAATATCGGCCCTCTATC
1 GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
315343 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
315408 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTATACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
315473 CGAGTTTTTATCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
315536 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCAT
260 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
315601 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATA
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
315666 AATTTACAA-CCATAAAAATGGCTTTGGCAC-CTAGAAATATGAAGATGTGCCTAAACCCACCTA
390 AATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
315729 CAACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT---GCCCTTCCGCC
454 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCC
* *
315791 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAG
519 CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * * * * * *
315856 ACTGAGGATTGCGGCAGTATGATCGACAGCACATAGAGGGGCAACCC-ATCGATCCTCGGCTTCC
584 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGG-GACCCGGTCGATCCCCGGCTTGC
* * * *
315920 GCATCTCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTC-GTGGGTTGACTTAGGCATAC
648 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATAC
* *
315984 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
713 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * ** * *
316049 TTGCGGTAGCACATGATGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC-ACCGAGGCGCAA
778 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCA
* * * *
316113 TCGCCGGAGCATCGTCCGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCAGGGGGGCG
843 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
*
316175 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
316240 CTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
316305 GTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
316370 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * ** *** **
316435 GTGCCAAAAATCCTTTCGAAAAAATTTAAAAAAAATCCAAAACAACAAAAAGTTTCAAAAATTGT
261 GGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
316500 GAAAAATAGAAAACGAGTAGTCTTGCCATGAAATTTCACGTGAAGGCTTAATGGACCACTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * ** *
316565 AATTTAAAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAAATGTGCCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
316630 CACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGGCGTAGT-------GCCCGCCC
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCC
*
316688 G---G-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
520 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * ** *
316749 CTGAGGGTTGCGGCAGCAGGATCGACAGCACACAGA-GGTGACCCGACCGATCCCCGGCTTGCGT
585 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
316813 ATCCTG-CCGTGTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGA
650 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACGG
*
316876 AGTTCATTCCCAGTCTAAGCATACGGA-TATCATTCCCAGTCTACGATCGGACCGGACCGAGGGT
715 AGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
316940 TGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCAT
779 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCAT
** * * *
317004 CGCCGGAGCATCACCGGAGAACCTTACCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCC
844 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC
* * *
317065 AGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
317130 CTCATCAAACCTCAAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
317195 GTAGCCATTAAAGTGTCTTAAATGTGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* **
317260 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * **
317325 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGTACCGCAAAAAGTTTCAAAAATTGTG
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
317390 AAAAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
317455 ATTTACAAGCCATAAAAATTTCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
317520 ACCCTATCGATCCACGACTTGCACAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCC
* * *** * * *
317585 GCCCGCTCGTTTCATTAATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAAC-GA
520 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-
* * * ** * *
317649 ACCAAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGAGGGACCCGGTCGATCCCCGGCTTACG
584 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * * * *
317714 CATGCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGGATATG
649 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACG
*
317778 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
714 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
317843 TGCGGCAGCCCATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T------CA-C--
779 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCAT
* * * *
317896 CG-GGGTACCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCC
844 CGCCGG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * * * * *
317957 AGGGGGTGCGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCGCTTATTC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
318022 CTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
318087 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
318152 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
318216 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
318281 -AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAA-GGACCGTTGTATAA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** *
318344 ATTTACAAGCCATAAAAATGGCATTGGCACATTGAAATATGAAGATGTGCCTAAACCCACCTACA
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
318409 ACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTTTGGCCGGCGTAGT---GCCCGCCCGCCTG
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCG
* * *
318470 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
521 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * * * * *
318535 CGAGGGTTGCGACAGTAGGATTGACAGCACACAGAGGGGCAACCGATCAATCCTCGGCTTCCGCA
586 CGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * * * * *
318600 TCTCGCCCCTCTGGCCAGCTGAGCGGCCGCACACTCGGTTCA-TGGGTTGACTTAGGCATATGGA
651 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACGGA
* *
318664 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
716 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * ** * *
318729 CGGCAGCAGATGTTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTT-GACCGGGGCACCATCA
781 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCATCG
* * *
318793 CCGGAGCATCGTCCGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATAAGGGGGGCC
846 CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGCC
* *
318852 GGGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTAT
1 --GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
318917 CCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
64 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
318982 CAGTAGCCATTAAAGTGTCTGGAATGGGGACAATTTTTTTAAATGGTTACAAAATCTTGTACACT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
319047 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTT
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * ** ***
319112 TGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCAAAACTACAAAAAGTTTCAAAAATCA
259 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
319177 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTATA-GGACCACTGTA
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGTA
** *
319241 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCT
388 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
319306 ACCACCCTATCGATCCACGGCTTGCGCATTCCCGTCTCTCTGG-CGACGTAGTGCCTGCCCGCCC
453 ACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCC
* * * *
319370 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATAGGAC
516 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * * *
319435 CAGACTGAGGGTTGAGGTAGCAGGATCAGCAGCACGCAGAGGGTGACTCGATCGATCCCTGGCTT
581 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTT
* * *
319500 GCGCATCCCG-CCGTGTGGCCGGCTGAGTGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCAT
646 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCAT
* * * * * *
319563 ACGGAGTTCACTCCTAGTCTAAGCATACAGA-TATCATTCACAGTCTACGATCGGACCGAACCGA
711 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGA
** * * *
319627 GGGTTGCGATAGCACATGCTGGGCTTGGACATGTGCTGGTGCCGCATTTTTCTTCG-CCGAGGCA
775 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCA
** * *
319691 CCATCGCCGGAGCATCACCGGAGAACCTTACCGGCGGCA-TGGGGTTTCGACGATCGGGGGGCC
840 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* * *
319754 -AGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
319818 CTCATCAAACCTCAAGCACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
319883 GTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGATCACAAAATATTCTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * **
319948 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAAAAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * **
320013 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGTACCGCAAAAAGTTTCAAAAATTGTG
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * * *
320078 AAAAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
320143 ATTTACAAGCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * * *
320208 ACCCTATCGATCCACGACTTGCACAACTCGTCTCTTTTGCTGGCATAGTGCCCGCCCGCCCGCCC
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCC
* * * * *
320273 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAACAGA--ATG
520 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-G
* * * * * * ** *
320336 AACCAAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGAGGGACCCGATCGATCCCCAACTTTC
584 -ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * * * * *
320401 GCATCCCTCCCCTCTTGCTGGCTGAGCGCCCGTACGCTCGTTTCA-TGGGTTGACTTAGGGATAT
648 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATAC
* * *
320465 GGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGA
713 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * ** *
320530 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACCGGGGCACCA
778 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCA
* * *
320594 T---C---G---C--CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATC-GTGGGCC
843 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* * *
320643 AGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
320708 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
320773 GTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** * *
320838 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTTCCAAGTTCG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * * * ** *
320903 GGGACAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGAGTAAAAAATCATG
261 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * * * *
320968 AAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAATGAACCGTTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
321033 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACATAAACCCACCAACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
321098 ACCCTATCGATCCACGACTTGCACATCCCATCTTTCTGGCCGACGTACTGCCCGCCCGTCCGCCT
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCG--C-CC-
* * *
321163 TCCCGCCCT-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGA
516 GCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * ** * * *
321227 CCAAACCGAGGGTTACGATAGTAGGATCGGTAGCACACAGAGGGTGACCCGGTCGAT---C--C-
580 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCT
* * *
321286 --C-CA----G---CT-T-----G--GA--------ATGATCGTTTC-GTGGGTCGACTTAGGCA
645 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCA
* * * * * ** *
321324 TACGGAATTCATTCCTAGTTTAAGCATACGAAGTTCATTCTCAGTCTAAGATTAGATCGGACCGA
710 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * *
321389 GGGTTGCAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTT--TGCCTG-GG
775 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTG-C-GAGG
* * * * * * * * *
321451 CACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGTTTCTGGCGACCGGGGGGG
838 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
321516 CC
902 CC
*
321518 GGGTGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
321583 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* ** *
321647 AGCAGCTTTTAAAATGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
130 AGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
321711 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
321776 TGGGGCTAAAACTCTTTCCGAAAGAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCA
259 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
321841 TCAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
321906 GAATTTACAAGCCACAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
321971 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTACCGGCCCGCCCGC
454 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGC
* * * * *
322036 CCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGCCTAAG
518 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
322092 CATACGGAGT
Statistics
Matches: 12979, Mismatches: 2174, Indels: 1551
0.78 0.13 0.09
Matches are distributed among these distances:
845 2 0.00
846 1 0.00
847 1 0.00
848 1 0.00
850 2 0.00
851 6 0.00
853 2 0.00
854 3 0.00
857 2 0.00
858 2 0.00
859 2 0.00
861 3 0.00
862 141 0.01
863 2 0.00
864 1 0.00
865 146 0.01
866 611 0.05
867 877 0.07
868 156 0.01
869 167 0.01
870 92 0.01
871 203 0.02
872 10 0.00
873 31 0.00
874 5 0.00
875 380 0.03
876 172 0.01
877 484 0.04
878 11 0.00
879 6 0.00
880 8 0.00
881 143 0.01
882 9 0.00
884 276 0.02
885 9 0.00
886 1 0.00
887 2 0.00
888 23 0.00
889 313 0.02
890 1001 0.08
891 90 0.01
892 571 0.04
893 11 0.00
894 102 0.01
895 56 0.00
896 209 0.02
897 435 0.03
898 129 0.01
899 739 0.06
900 393 0.03
901 368 0.03
902 174 0.01
903 560 0.04
904 798 0.06
905 1125 0.09
906 271 0.02
907 54 0.00
908 66 0.01
909 85 0.01
910 230 0.02
911 68 0.01
912 34 0.00
913 22 0.00
914 16 0.00
915 27 0.00
916 29 0.00
917 14 0.00
918 11 0.00
919 11 0.00
920 16 0.00
921 8 0.00
922 16 0.00
923 20 0.00
924 20 0.00
925 19 0.00
926 15 0.00
927 16 0.00
929 4 0.00
931 3 0.00
933 4 0.00
934 9 0.00
935 1 0.00
936 3 0.00
937 4 0.00
938 5 0.00
939 5 0.00
940 4 0.00
941 3 0.00
942 2 0.00
943 2 0.00
944 4 0.00
945 6 0.00
946 3 0.00
947 2 0.00
948 2 0.00
949 6 0.00
950 17 0.00
951 13 0.00
952 17 0.00
953 8 0.00
954 5 0.00
955 8 0.00
956 8 0.00
957 8 0.00
958 12 0.00
959 10 0.00
960 10 0.00
961 13 0.00
962 6 0.00
963 21 0.00
964 12 0.00
965 6 0.00
966 5 0.00
967 8 0.00
968 8 0.00
969 3 0.00
970 2 0.00
971 1 0.00
972 2 0.00
973 1 0.00
974 1 0.00
976 5 0.00
977 2 0.00
978 1 0.00
979 9 0.00
980 1 0.00
981 3 0.00
983 1 0.00
984 1 0.00
985 1 0.00
986 1 0.00
987 3 0.00
990 5 0.00
991 3 0.00
993 2 0.00
995 2 0.00
996 5 0.00
997 6 0.00
998 2 0.00
999 2 0.00
1000 4 0.00
1002 2 0.00
1005 4 0.00
1006 3 0.00
1008 1 0.00
1009 7 0.00
1010 7 0.00
1012 4 0.00
1014 10 0.00
1015 6 0.00
1016 8 0.00
1017 1 0.00
1019 4 0.00
1020 4 0.00
1021 7 0.00
1022 9 0.00
1024 38 0.00
1025 56 0.00
1026 31 0.00
1027 37 0.00
1028 41 0.00
1029 23 0.00
1030 61 0.00
1031 117 0.01
1032 53 0.00
1033 37 0.00
1034 49 0.00
1035 24 0.00
1036 55 0.00
1037 58 0.00
1038 39 0.00
1039 57 0.00
1040 51 0.00
1041 52 0.00
1042 24 0.00
1043 26 0.00
1044 19 0.00
1045 22 0.00
1046 19 0.00
1047 28 0.00
1048 20 0.00
1049 20 0.00
1050 13 0.00
1051 5 0.00
1052 17 0.00
1053 14 0.00
1054 30 0.00
1055 22 0.00
1056 21 0.00
1057 13 0.00
1058 9 0.00
1059 84 0.01
1060 17 0.00
1061 8 0.00
1062 6 0.00
1063 25 0.00
1064 5 0.00
1065 6 0.00
1066 12 0.00
1067 63 0.00
1068 77 0.01
1069 15 0.00
1070 5 0.00
1071 19 0.00
1072 4 0.00
1073 6 0.00
1076 2 0.00
1077 1 0.00
1078 8 0.00
1079 5 0.00
1080 6 0.00
1082 20 0.00
1083 39 0.00
1084 44 0.00
1085 27 0.00
1086 34 0.00
1087 70 0.01
1088 173 0.01
1089 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCG
CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGCGAGGCACCATCG
CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
Found at i:308512 original size:12 final size:12
Alignment explanation
Indices: 308495--308520 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
308485 CCGAAGTAGT
308495 GCCCGCCTGCCC
1 GCCCGCCTGCCC
308507 GCCCGCCTGCCC
1 GCCCGCCTGCCC
308519 GC
1 GC
308521 TCATTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
GCCCGCCTGCCC
Found at i:308752 original size:25 final size:26
Alignment explanation
Indices: 308701--308752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
308691 GTTGACTTAG
*
308701 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
308727 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
308752 G
1 G
308753 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:311430 original size:179 final size:175
Alignment explanation
Indices: 311112--311489 Score: 492
Period size: 179 Copynumber: 2.1 Consensus size: 175
311102 CGATCCATGG
311112 CTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGTACGCCCGCCCGTCCGCTTGTTCC
1 CTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGTACGCCCGCCCGTCCGCTTGTTCC
* **
311177 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGTTTGTGG
66 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGG
** *
311242 CAACAGGATCGATAGCATGCAGAGGGGGACCCGGCCGATCCCCGA
131 CAACAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCGA
* *
311287 CTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGGT-CGCCCGCCCG-CCTGCT
1 CTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT----GCCCACCC-GTACGCCCGCCCGTCC-GCT
* * *
311350 TGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACC-GAATCGAGG
60 TGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ATCAAGG
* * * * * *
311414 GTTACGGCAGCAGGATCGGTAGCACACATAGGTGGACCCGACCGATCCTCGG
124 GTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCGA
* * *
311466 CTTGCGGATCCCGCCCCTCTGGCC
1 CTTGCGCATCCCGTCTCTCTGGCC
311490 GACTGAGCGC
Statistics
Matches: 175, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
175 30 0.17
178 3 0.02
179 140 0.80
180 2 0.01
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.21
Consensus pattern (175 bp):
CTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGTACGCCCGCCCGTCCGCTTGTTCC
GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGG
CAACAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCGA
Found at i:312487 original size:26 final size:26
Alignment explanation
Indices: 312440--312489 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
312430 TTGACTTAGC
*
312440 CATACAGAGTTCATTCATAGTCTAAG
1 CATACAGAGTTCATTCACAGTCTAAG
* *
312466 CATACGGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCACAGTCTA
312490 TGATCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAG
Found at i:313159 original size:12 final size:12
Alignment explanation
Indices: 313142--313167 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
313132 CCGACGTAGT
313142 GCCCGCCTGCCC
1 GCCCGCCTGCCC
313154 GCCCGCCTGCCC
1 GCCCGCCTGCCC
313166 GC
1 GC
313168 TCGTTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
GCCCGCCTGCCC
Found at i:313378 original size:26 final size:26
Alignment explanation
Indices: 313348--313400 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
313338 GTTGACTTAG
313348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
313374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
313400 G
1 G
313401 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.