Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 32 of 120
Found at i:3522645 original size:26 final size:26
Alignment explanation
Indices: 3522609--3522661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3522599 CTGGTCCCAT
3522609 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
* *
3522635 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
3522661 C
1 C
3522662 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:3523359 original size:23 final size:23
Alignment explanation
Indices: 3523329--3523384 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
3523319 TCAACCATCA
3523329 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3523352 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3523375 ATGGCACATG
1 ATGGCACATG
3523385 CATCGACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.23, C:0.14, G:0.38, T:0.25
Consensus pattern (23 bp):
ATGGCACATGATGGTGCATGGTG
Found at i:3523480 original size:45 final size:45
Alignment explanation
Indices: 3523431--3523539 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
3523421 GGGCAATTGT
* * *
3523431 CTCGACCGCCATCGGCACAAGCTGGGCCTTGGTACGGGCGGTTGC
1 CTCGACCACCATCGGCACAAGATGGCCCTTGGTACGGGCGGTTGC
* **
3523476 CTCGACCACCATCGGTACAAGATGGCCCTTGGTGTGGGCGGTTGC
1 CTCGACCACCATCGGCACAAGATGGCCCTTGGTACGGGCGGTTGC
* *
3523521 ATCGAACACCATCGGCACA
1 CTCGACCACCATCGGCACA
3523540 TGCTAGGTCG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
CTCGACCACCATCGGCACAAGATGGCCCTTGGTACGGGCGGTTGC
Found at i:3523819 original size:25 final size:25
Alignment explanation
Indices: 3523783--3523832 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
3523773 CAGTCTGATC
3523783 TTAGACTAGGAATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
* *
3523808 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
3523833 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (25 bp):
TTAGACTAGGAATGAACTCCATATG
Found at i:3524170 original size:26 final size:26
Alignment explanation
Indices: 3524134--3524186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3524124 CTGGTCCCAT
3524134 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
* *
3524160 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
3524186 C
1 C
3524187 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:3524316 original size:196 final size:194
Alignment explanation
Indices: 3523965--3524356 Score: 452
Period size: 196 Copynumber: 2.0 Consensus size: 194
3523955 TCTGGCTGGG
* ** *
3523965 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGCTCAGC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGGCTCAGC
* * ** *
3524030 CGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCTCTACGTGCTGTCGATCCTA
66 CGGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCTCTACGTGCTATCGATCCTA
* ** ** ** * *
3524095 CTGTTGGTCCTGCTGTCGTAACCCTCGATCTGGTCCCATCTTAGACTGGGAATGAACTATGTAT
131 CGGTTGGTCCTGCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTACGTAT
* * * *
3524159 GCTTAGAC-TGGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACAAGCATGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGG-GCTCA
3524223 GCCGGCCAGAGAGGCA-AGATGCACAAGCC-AGGGATCGACCCGGTCCCCTCTACGTGCTATCGA
64 GCCGGCCAGAGAGGCAGA-ATGCACAAGCCGA-GGATCGACCCGGT-CCCTCTACGTGCTATCGA
* * * *
3524286 TCC-A-GGTACTGGTCCTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGGCTGGGAGTGCACT
126 TCCTACGGT--TGGTCCTGCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACT
3524349 ACGTAT
189 ACGTAT
3524355 GC
1 GC
3524357 CTAAGTCAAC
Statistics
Matches: 165, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
193 1 0.01
194 52 0.32
195 42 0.25
196 70 0.42
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGGCTCAGC
CGGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCTCTACGTGCTATCGATCCTA
CGGTTGGTCCTGCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTACGTAT
Found at i:3524945 original size:45 final size:44
Alignment explanation
Indices: 3524896--3525036 Score: 165
Period size: 45 Copynumber: 3.1 Consensus size: 44
3524886 TCTTGACCGT
3524896 CATCGGCACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
1 CATCGGCACAAGCT-GGCCCTGGTGCGGGCGGTTGCCTCGACCAC
* * * * *
3524941 CATCGGCATAAGATGGCCCTTGGTGTGGGCGGTTGCATCGAACAC
1 CATCGGCACAAGCTGGCCC-TGGTGCGGGCGGTTGCCTCGACCAC
* * * * *
3524986 CATCGGCACATGCTGGGTCATGGTGCGGGTGGTTGCCTTGACCAC
1 CATCGGCACAAGCT-GGCCCTGGTGCGGGCGGTTGCCTCGACCAC
3525031 CATCGG
1 CATCGG
3525037 TACATGCCGA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 5 0.06
45 71 0.90
46 3 0.04
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (44 bp):
CATCGGCACAAGCTGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
Found at i:3525517 original size:26 final size:26
Alignment explanation
Indices: 3525481--3525533 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3525471 TCGGTCTGAT
*
3525481 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
3525507 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
3525533 C
1 C
3525534 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:3525876 original size:26 final size:26
Alignment explanation
Indices: 3525835--3525887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3525825 CTGGTCCCAT
3525835 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTATGTATG
* * *
3525861 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTATGTATG
3525887 C
1 C
3525888 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATGTATG
Found at i:3525998 original size:196 final size:196
Alignment explanation
Indices: 3525677--3526035 Score: 492
Period size: 196 Copynumber: 1.8 Consensus size: 196
3525667 TAGAAATGGA
* * * * *
3525677 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGCGCGGGGGCTTAGCCGATCGAAGAGG
1 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAGCCGACCGAAGAGG
* * * **
3525742 TAGAATGCGTAAGCCAAGGATCGATCCGGTCCCCCTTGCGTGCTGTCGATCCTACTACTGGTCCT
66 AAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGCGTGCTACCGATCCTACTACTGGTCCT
* * * *
3525807 GTTGTCGCAACCCTCGGTCTGGTCCCATCTTAGACTAGGAATGAACTATGTATGCTTAGACTGGG
131 GCTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTATGTATGCTTAGACTGGG
3525872 G
196 G
* * *
3525873 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC-AGAGAG
1 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAGCCGACCGA-AGAG
*
3525937 GCAAG-ATGCGCAAGCCAGGGATCGACCCGGT-CCCCTCTGCGTGCTACCGATCC-AGCTACTGG
65 G-AAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCT-TGCGTGCTACCGATCCTA-CTACTGG
3525999 TCCTGCTATCGCAACCCTCGGTCCGGTCCAATCTTAG
127 TCCTGCTATCGCAACCCTCGGTCCGGTCCAATCTTAG
3526036 GATGGGAGTA
Statistics
Matches: 141, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
195 7 0.05
196 132 0.94
197 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (196 bp):
ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAGCCGACCGAAGAGG
AAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGCGTGCTACCGATCCTACTACTGGTCCT
GCTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTATGTATGCTTAGACTGGG
G
Found at i:3526670 original size:45 final size:44
Alignment explanation
Indices: 3526616--3526705 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 44
3526606 GGCTACCTTT
* * * *
3526616 TAGTACGGGCACTTGTCTCGACCGCCATCGGCACAAGCTGGGCCC
1 TAGTACGGGCACTTGCCTCGACCACCATCGACACAAGAT-GGCCC
* **
3526661 TAGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCC
1 TAGTACGGGCACTTGCCTCGACCACCATCGACACAAGATGGCCC
3526705 T
1 T
3526706 TGGTGTGGAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 6 0.16
45 32 0.84
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (44 bp):
TAGTACGGGCACTTGCCTCGACCACCATCGACACAAGATGGCCC
Found at i:3526719 original size:45 final size:44
Alignment explanation
Indices: 3526632--3526785 Score: 146
Period size: 45 Copynumber: 3.4 Consensus size: 44
3526622 GGGCACTTGT
* * *
3526632 CTCGACCGCCATCGGCACAAGCTGGGCCCTAGTGCGGGCGGTTGC
1 CTCGACCACCATCGACACAAGCT-GGCCCTGGTGCGGGCGGTTGC
* * *
3526677 CTCGACCACCATCGACACAAGATGGCCCTTGGTGTGGACGGTTGC
1 CTCGACCACCATCGACACAAGCTGGCCC-TGGTGCGGGCGGTTGC
* * * ** * * *
3526722 ATCGAACACCATCGGCACGTGCTGGGTCGTGGTGCGGGTGGTTGC
1 CTCGACCACCATCGACACAAGCT-GGCCCTGGTGCGGGCGGTTGC
*
3526767 CTCGACCACCATAGACACA
1 CTCGACCACCATCGACACA
3526786 TACCGAGCCT
Statistics
Matches: 85, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
44 5 0.06
45 77 0.91
46 3 0.04
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (44 bp):
CTCGACCACCATCGACACAAGCTGGCCCTGGTGCGGGCGGTTGC
Found at i:3527584 original size:25 final size:25
Alignment explanation
Indices: 3527548--3527595 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
3527538 TTCGATCTTA
*
3527548 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAAATCCGTATGCTT
*
3527573 GACTAGGG-ATGAAATCTGTATGC
1 GACT-GGGAATGAAATCCGTATGC
3527596 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAAATCCGTATGCTT
Found at i:3529219 original size:26 final size:26
Alignment explanation
Indices: 3529183--3529235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3529173 CCGATCTGAT
3529183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3529209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3529235 C
1 C
3529236 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3530408 original size:45 final size:43
Alignment explanation
Indices: 3530334--3530519 Score: 167
Period size: 45 Copynumber: 4.1 Consensus size: 43
3530324 CATCAACCAT
* * * *
3530334 CATCGGCACAAGT-TGCCCTTTGGTACGGGCACTTACCTCGACCAC
1 CATCGGCACAAGTGGGCCC--TGGTGCGGGCA-TTGCCTCGATCAC
*
3530379 CATCGGCACAAGCTGGGCCCTAGTGCGGGCAGTTGCCTCGATCAC
1 CATCGGCACAAG-TGGGCCCTGGTGCGGGCA-TTGCCTCGATCAC
* * *
3530424 CATCGGCATATGTTGGCCCTTGGTGCGGGCGATTGCCTCGATCAC
1 CATCGGCACAAGTGGGCCC-TGGTGCGGGC-ATTGCCTCGATCAC
* * * * *
3530469 CATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACAC
1 CATCGGCACAAG-TGGGCCCTGGTGCGGGC-ATTGCCTCGATCAC
3530514 CATCGG
1 CATCGG
3530520 TACATGCTGG
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
44 6 0.05
45 101 0.86
46 7 0.06
47 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.20
Consensus pattern (43 bp):
CATCGGCACAAGTGGGCCCTGGTGCGGGCATTGCCTCGATCAC
Found at i:3530447 original size:90 final size:90
Alignment explanation
Indices: 3530334--3530519 Score: 232
Period size: 90 Copynumber: 2.1 Consensus size: 90
3530324 CATCAACCAT
* *
3530334 CATCGGCACAAGTTGCCCTTTGGTACGGGC-ACTTACCTCGACCACCATCGGCACAAGCTGGGCC
1 CATCGGCACAAGTTGCCCTTTGGTACGGGCGA-TTACCTCGACCACCATCGGCACAAGATGGCCC
* * *
3530398 CTAGTGCGGGCAGTTGCCTCGATCAC
65 CTAGTACGGGCAGTTGCATCGAACAC
* * * * *
3530424 CATCGGCATATGTTGGCCC-TTGGTGCGGGCGATTGCCTCGATCACCATCGGCACAAGATGGCCC
1 CATCGGCACAAGTT-GCCCTTTGGTACGGGCGATTACCTCGACCACCATCGGCACAAGATGGCCC
* *
3530488 CTGGTACGGGCGGTTGCATCGAACAC
65 CTAGTACGGGCAGTTGCATCGAACAC
3530514 CATCGG
1 CATCGG
3530520 TACATGCTGG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
90 77 0.94
91 5 0.06
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.20
Consensus pattern (90 bp):
CATCGGCACAAGTTGCCCTTTGGTACGGGCGATTACCTCGACCACCATCGGCACAAGATGGCCCC
TAGTACGGGCAGTTGCATCGAACAC
Found at i:3531320 original size:26 final size:26
Alignment explanation
Indices: 3531291--3531343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3531281 CTGGTCCGAT
3531291 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
3531317 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3531343 C
1 C
3531344 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:3532383 original size:45 final size:45
Alignment explanation
Indices: 3532289--3532493 Score: 144
Period size: 45 Copynumber: 4.6 Consensus size: 45
3532279 GTACGGCCAC
** * * * * ** * *
3532289 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTAGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACATGATGGGCCTTGGTGTGGGCGA
* * *
3532334 TTGCCTCGATCACCATCGACACATG-TGGGCCCTTGGTATGGGCGA
1 TTGCCTCGACCACCATCGGCACATGATGGG-CCTTGGTGTGGGCGA
* * * * * *
3532379 TTGCCTCAACCATCATCGGCATAAGAT-GGCCTCTAGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACATGATGGGCCT-TGGTGTGGGCGA
* * * * * *
3532424 TTACATCGAACACCATCGGCACATGTTGGGCCGTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACATGATGGGCCTTGGTGTGGGCGA
*
3532469 TTGCCTCGACCACCATCGGTACATG
1 TTGCCTCGACCACCATCGGCACATG
3532494 CCGAGCCCCA
Statistics
Matches: 119, Mismatches: 37, Indels: 8
0.73 0.23 0.05
Matches are distributed among these distances:
44 7 0.06
45 107 0.90
46 5 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGATGGGCCTTGGTGTGGGCGA
Found at i:3532383 original size:90 final size:90
Alignment explanation
Indices: 3532289--3532487 Score: 222
Period size: 90 Copynumber: 2.2 Consensus size: 90
3532279 GTACGGCCAC
** * * * * * *
3532289 TTGCCTCGACTGCCATCGGCACAAGCTGGGCC-CTAGTGCAGGTGGTTGCCTCGATCACCATCGA
1 TTGCCTCGACCACCATCGGCACAAGAT-GGCCTCTAGTGCAGGCGATTACATCGAACACCATCGA
*
3532353 CACATG-TGGGCCCTTGGTATGGGCGA
65 CACATGTTGGG-CCGTGGTATGGGCGA
* * * * *
3532379 TTGCCTCAACCATCATCGGCATAAGATGGCCTCTAGTGCGGGCGATTACATCGAACACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCTCTAGTGCAGGCGATTACATCGAACACCATCGAC
* *
3532444 ACATGTTGGGCCGTGGTGTGGGCGG
66 ACATGTTGGGCCGTGGTATGGGCGA
3532469 TTGCCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
3532488 TACATGCCGA
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 4 0.04
90 81 0.91
91 4 0.04
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCTCTAGTGCAGGCGATTACATCGAACACCATCGAC
ACATGTTGGGCCGTGGTATGGGCGA
Found at i:3532962 original size:26 final size:26
Alignment explanation
Indices: 3532933--3532984 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3532923 GTCGATCCGA
3532933 TCTTAGACTAAGAATGAACTCCGTAT
1 TCTTAGACTAAGAATGAACTCCGTAT
* *
3532959 TCTTAGACTAGGAATGAACTCTGTAT
1 TCTTAGACTAAGAATGAACTCCGTAT
3532985 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAAGAATGAACTCCGTAT
Found at i:3540213 original size:45 final size:45
Alignment explanation
Indices: 3540157--3540366 Score: 147
Period size: 45 Copynumber: 4.7 Consensus size: 45
3540147 GGGCGTGACA
*
3540157 CGGGCACTTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTG
1 CGGGCAGTTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTG
* * * * * **
3540202 TGGGCAGTTGCCTCGATCACCATCGGCACATGC-CAGCCCTTGGTG
1 CGGGCAGTTGCCTTGACCACCATCAGCACAAGCTGGGCCC-TGGTG
* ** * *
3540247 CGGGC-GATTGCCTCGACCACCATCAGCACAAAATGGCCCCTGGAG
1 CGGGCAG-TTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTG
* * * * * ** *
3540292 CGGGCGGTTACATTGAACACCATC-GACACATGCTGGGCTGTGCTG
1 CGGGCAGTTGCCTTGACCACCATCAG-CACAAGCTGGGCCCTGGTG
* * * *
3540337 TGGCCGGTTGCCTTGACCACCATCGGCACA
1 CGGGCAGTTGCCTTGACCACCATCAGCACA
3540367 TTCTGAGCTC
Statistics
Matches: 124, Mismatches: 35, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
44 6 0.05
45 113 0.91
46 5 0.04
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (45 bp):
CGGGCAGTTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTG
Found at i:3540844 original size:26 final size:26
Alignment explanation
Indices: 3540808--3540860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3540798 CCAGTCTGAT
*
3540808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3540834 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3540860 C
1 C
3540861 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3542230 original size:90 final size:90
Alignment explanation
Indices: 3542131--3542351 Score: 257
Period size: 90 Copynumber: 2.4 Consensus size: 90
3542121 GGCATAGGCT
* * * * * * * *
3542131 GCCCTTTGGTACGGGC-ACTTGCCTCAATCGCCATTGGCACAAGCTGGGCCCTGGTGTGAGCGGT
1 GCCC-TTGGTGCGGGCGA-TTGCCTCAACCACCATCGGCACAAGATGGCCCCTAGTGCGAGCGGT
*
3542195 TG-ACTCGATCACCATCGGCACATGCCG
64 TGCACT-GAACACCATCGGCACATGCCG
* * *
3542222 GCCCTTGGTGTGGGCGATTGCCTCAACCACTATCGGCACAAGATGGCCCCTAGTGCGGGCGGTTG
1 GCCCTTGGTGCGGGCGATTGCCTCAACCACCATCGGCACAAGATGGCCCCTAGTGCGAGCGGTTG
*
3542287 CACTGAACACCATCGGCACATGCTG
66 CACTGAACACCATCGGCACATGCCG
* * *
3542312 GGCCGTGGTGCGGGCGATTGCCTCGACCACCATCGGCACA
1 GCCCTTGGTGCGGGCGATTGCCTCAACCACCATCGGCACA
3542352 TGTCGAGCCC
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
90 102 0.93
91 8 0.07
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (90 bp):
GCCCTTGGTGCGGGCGATTGCCTCAACCACCATCGGCACAAGATGGCCCCTAGTGCGAGCGGTTG
CACTGAACACCATCGGCACATGCCG
Found at i:3542231 original size:45 final size:45
Alignment explanation
Indices: 3542177--3542362 Score: 160
Period size: 45 Copynumber: 4.1 Consensus size: 45
3542167 GCACAAGCTG
* * * *
3542177 GGCCC-TGGTGTGAGCGGTTGACTCGATCACCATCGGCACATGCC
1 GGCCCTTGGTGCGGGCGATTGACTCGACCACCATCGGCACATGCC
* * * * * **
3542221 GGCCCTTGGTGTGGGCGATTGCCTCAACCACTATCGGCACAAGAT
1 GGCCCTTGGTGCGGGCGATTGACTCGACCACCATCGGCACATGCC
* * * * *
3542266 GGCCCCTAGTGCGGGCGGTTGCACT-GAACACCATCGGCACATGCT
1 GGCCCTTGGTGCGGGCGATTG-ACTCGACCACCATCGGCACATGCC
* * * *
3542311 GGGCCGTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATGTC
1 GGCCCTTGGTGCGGGCGATTGACTCGACCACCATCGGCACATGCC
3542356 GAGCCCT
1 G-GCCCT
3542363 GATTGGCCAC
Statistics
Matches: 109, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
44 7 0.06
45 97 0.89
46 5 0.05
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
GGCCCTTGGTGCGGGCGATTGACTCGACCACCATCGGCACATGCC
Found at i:3543797 original size:12 final size:12
Alignment explanation
Indices: 3543780--3543811 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3543770 TGAGGGATAG
3543780 GGGGCCAATATA
1 GGGGCCAATATA
3543792 GGGGCCAATATA
1 GGGGCCAATATA
*
3543804 AGGGCCAA
1 GGGGCCAA
3543812 GTATCGGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:3544167 original size:45 final size:45
Alignment explanation
Indices: 3544085--3544190 Score: 106
Period size: 45 Copynumber: 2.4 Consensus size: 45
3544075 GTATAGGCAC
* * * * *
3544085 TTGCCTTGATCGCCATTGGCACAAGCTCAGCGCTGGTGCGGGCGG
1 TTGCCTCGATCACCATTGGCACAAGCCCAGCCCTGGTGCGGGCGA
* * *
3544130 TTGCCTCGATCACCATTGGCACATGCCCA-CCCTTGGTGTGGGTGA
1 TTGCCTCGATCACCATTGGCACAAGCCCAGCCC-TGGTGCGGGCGA
* *
3544175 TTGCCTCAACCACCAT
1 TTGCCTCGATCACCAT
3544191 CGACACAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 2 0.04
45 48 0.96
ACGTcount: A:0.16, C:0.32, G:0.27, T:0.25
Consensus pattern (45 bp):
TTGCCTCGATCACCATTGGCACAAGCCCAGCCCTGGTGCGGGCGA
Found at i:3544287 original size:45 final size:46
Alignment explanation
Indices: 3544175--3544289 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 46
3544165 GTGTGGGTGA
* * * * *
3544175 TTGCCTCAACCACCATCGACACAAAATGGGCCACTGGTGTGGGCAG
1 TTGCCTCGACCACCATCGGCACATAATGGGCCACTGGTGCGAGCAG
* * * * *
3544221 TTGCATCGAACACCATTGGCACATATTGGGCCA-TGGTGCGAGCGG
1 TTGCCTCGACCACCATCGGCACATAATGGGCCACTGGTGCGAGCAG
*
3544266 TTGCCTCGACCACTATCGGCACAT
1 TTGCCTCGACCACCATCGGCACAT
3544290 GCCGAGCCCT
Statistics
Matches: 55, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
45 29 0.53
46 26 0.47
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (46 bp):
TTGCCTCGACCACCATCGGCACATAATGGGCCACTGGTGCGAGCAG
Found at i:3544781 original size:26 final size:26
Alignment explanation
Indices: 3544730--3544782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3544720 TCAGTCCGAT
* *
3544730 CTTAAACTGGGAATGAACTGCATATG
1 CTTAAACTAGGAATGAACTCCATATG
* *
3544756 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
3544782 C
1 C
3544783 CTAAGCCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:3545522 original size:45 final size:45
Alignment explanation
Indices: 3545473--3545591 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 45
3545463 TGTCAATCCT
* *
3545473 TGGTGCGGGCAATTACCTCGACCACCATCGGCACAAGATGGCCCC
1 TGGTGCGGGCAATTGCCTCGAACACCATCGGCACAAGATGGCCCC
* ** * * * * * *
3545518 TGGTGCAGGCAGCTGCATCGAACACCATTGGCACATGCTGGGCCG
1 TGGTGCGGGCAATTGCCTCGAACACCATCGGCACAAGATGGCCCC
*
3545563 TGGTGCGGGCGATTGCCTCGAACACCATC
1 TGGTGCGGGCAATTGCCTCGAACACCATC
3545592 AGTACATGCC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (45 bp):
TGGTGCGGGCAATTGCCTCGAACACCATCGGCACAAGATGGCCCC
Found at i:3546075 original size:26 final size:26
Alignment explanation
Indices: 3546039--3546091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3546029 CCGATCTGAT
*
3546039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3546065 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3546091 C
1 C
3546092 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3547325 original size:45 final size:45
Alignment explanation
Indices: 3547174--3547344 Score: 130
Period size: 45 Copynumber: 3.8 Consensus size: 45
3547164 CACACTGGCA
* ** **
3547174 GCCCTTAGGTACGGGC-AGTTGCCTCGATGACCATCGACACAAGATTG
1 GCCCTT-GGTAAGGGCGA-TTGCCTCGAACACCATCGGTACAAGA-TG
* * * * * * **
3547221 GCCC-TAGTATGGGTGATTGCCTGGATCACCATCGGTACATGCCG
1 GCCCTTGGTAAGGGCGATTGCCTCGAACACCATCGGTACAAGATG
** * *
3547265 GCCCTTGGTGCGGGCGATTACCTCGACCACCATCGGTACAAGATG
1 GCCCTTGGTAAGGGCGATTGCCTCGAACACCATCGGTACAAGATG
* *
3547310 GCCCTTGGTAAGGGCGGTTGCATCGAACACCATCG
1 GCCCTTGGTAAGGGCGATTGCCTCGAACACCATCG
3547345 ACACATGGTG
Statistics
Matches: 96, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.05
45 85 0.89
46 2 0.02
47 4 0.04
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCCTTGGTAAGGGCGATTGCCTCGAACACCATCGGTACAAGATG
Found at i:3548201 original size:26 final size:26
Alignment explanation
Indices: 3548165--3548217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3548155 ATGGTCCGAT
* *
3548165 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3548191 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3548217 C
1 C
3548218 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3548363 original size:196 final size:196
Alignment explanation
Indices: 3547994--3548387 Score: 441
Period size: 196 Copynumber: 2.0 Consensus size: 196
3547984 TCTGGCTGGG
* *
3547994 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * ** * * *
3548059 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCATGCTGTCGATCT
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGCATGCCGTCGATCT
* * * * * * * *
3548124 TGCTGCTGGTCCTGCTGTCGTAACCCTTAATATGGTCCGATCTTAGATTGGGAATGAACTTCGTA
131 TGCTACGGGTCCTACTGTCGCAACCCTCAATACGGTCCGATCTTAGACTGGGAATGAACTACGTA
3548189 T
196 T
* * * * *
3548190 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTATGGGCTCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * *
3548254 ACCGGCCAGAGAGGTAGGATGCGTAAGTCAAGGATCGACCCGGT-CCCCTCTGCGTGCCGTCGAT
65 ACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCT-TGCATGCCGTCGAT
* * * * * * *
3548318 CTTGCTACGGGTTCTACTGTTGCAACCCTCAATCCGTTTCGATCTTAGACTGGGAGTGCACTACG
129 CTTGCTACGGGTCCTACTGTCGCAACCCTCAATACGGTCCGATCTTAGACTGGGAATGAACTACG
3548383 TAT
194 TAT
3548386 GC
1 GC
3548388 CTATGTCAAC
Statistics
Matches: 161, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 6 0.04
196 155 0.96
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGCATGCCGTCGATCT
TGCTACGGGTCCTACTGTCGCAACCCTCAATACGGTCCGATCTTAGACTGGGAATGAACTACGTA
T
Found at i:3551037 original size:26 final size:26
Alignment explanation
Indices: 3550987--3551039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3550977 CCGGTCTGAT
**
3550987 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3551013 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3551039 C
1 C
3551040 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3551438 original size:9 final size:10
Alignment explanation
Indices: 3551414--3551446 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
3551404 CTCGTTTTTT
3551414 ATTTTTCATG
1 ATTTTTCATG
3551424 ATTTTTCATG
1 ATTTTTCATG
3551434 ATTTTTCATG
1 ATTTTTCATG
3551444 ATT
1 ATT
3551447 ATAGAAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.61
Consensus pattern (10 bp):
ATTTTTCATG
Found at i:3552811 original size:26 final size:26
Alignment explanation
Indices: 3552773--3552822 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
3552763 GTCCAATCTT
3552773 AGACTGGGAATGAACTAC-GTATGCTC
1 AGACTGGGAATGAACT-CTGTATGCTC
3552799 AGACTAGGG-ATGAACTCTGTATGC
1 AGACT-GGGAATGAACTCTGTATGC
3552823 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.05
26 18 0.82
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTC
Found at i:3553831 original size:45 final size:45
Alignment explanation
Indices: 3553775--3553931 Score: 163
Period size: 45 Copynumber: 3.5 Consensus size: 45
3553765 GTACGGGCAC
* *
3553775 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * * *
3553820 TCGCCTTGACCACC-TCGGTACAAGATAGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * * *
3553864 TTGCATCGAACACCATCGACACATGCTGGGCCGTGGTGCAGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
3553909 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3553932 TGTCGAGTCC
Statistics
Matches: 85, Mismatches: 26, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
44 33 0.39
45 52 0.61
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:3554403 original size:26 final size:26
Alignment explanation
Indices: 3554365--3554420 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3554355 CCAGTTTGAT
* *
3554365 CTTAGCCTGGGAATGAACTCCGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
*
3554391 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
3554417 CTTA
1 CTTA
3554421 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:3555853 original size:26 final size:26
Alignment explanation
Indices: 3555815--3555871 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
3555805 CTGGTCCAAT
3555815 CTTAGACTAGGAATGAACTCCGTATG-
1 CTTAGACTAGGAATGAACT-CGTATGC
*
3555841 CTTAGACTGGGAATGAACTCGTATGC
1 CTTAGACTAGGAATGAACTCGTATGC
3555867 CTTAG
1 CTTAG
3555872 TCAACTCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 6 0.21
26 23 0.79
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGTATGC
Found at i:3556040 original size:26 final size:26
Alignment explanation
Indices: 3556011--3556063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3556001 CTGATTCGAT
*
3556011 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
3556037 CTTAGATTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
3556063 C
1 C
3556064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:3556195 original size:196 final size:196
Alignment explanation
Indices: 3555813--3556166 Score: 460
Period size: 197 Copynumber: 1.8 Consensus size: 196
3555803 TGCTGGTCCA
* *
3555813 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTTAGTCAACT
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACC
* * * * * *
3555878 CATGAAACAAGCGTGCGGGCACTGAGCTATCCAAAGAGGCAGGATGCGCAAGCCGGGGATCGACC
66 CATAAAACAAGCATGCGGGCACTCAGCAATCCAAAGAGCCAGGATGCGCAAGCCAGGGATCGACC
* * *
3555943 CGGTCCCCCTCTGCATGCTGCCGATCCTACTGCTAGTCCTACTGTCGCAACCCTCAGTCTGATTC
131 CGATCCCCCTATGCATGCTGCCGATCCCACTGCTAGTCCTACTGTCGCAACCCTCAGTCTGATTC
3556008 G
196 G
* * * *
3556009 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTACGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAAC
** * ** * *
3556074 CCATAAAATGAGCATGCGGGCGCTCAGCCAAT-CGGAGAGCCAGGATGCGTAAGCTAGGGATCGA
65 CCATAAAACAAGCATGCGGGCACTCAG-CAATCCAAAGAGCCAGGATGCGCAAGCCAGGGATCGA
* *
3556138 CCCGAT-CCCCTATGCGTGCTGTCGATCCC
129 CCCGATCCCCCTATGCATGCTGCCGATCCC
3556167 GCTGTGGGTT
Statistics
Matches: 132, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
196 62 0.47
197 67 0.51
198 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACC
CATAAAACAAGCATGCGGGCACTCAGCAATCCAAAGAGCCAGGATGCGCAAGCCAGGGATCGACC
CGATCCCCCTATGCATGCTGCCGATCCCACTGCTAGTCCTACTGTCGCAACCCTCAGTCTGATTC
G
Found at i:3556785 original size:45 final size:45
Alignment explanation
Indices: 3556721--3556824 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 45
3556711 CCCTGGTGCG
* * * *
3556721 GGCACAGGCTGGCCTTTGGTACTGGCACTTGCCTCGATCGCCATC
1 GGCACAAGCTGGCCTTTGGTACGGGCACTTGCCTCGACCACCATC
* ***
3556766 GGCACAAGCTGGGCC-TTGGTGCGGGTGGTTGCCTCGACCACCATC
1 GGCACAAGCT-GGCCTTTGGTACGGGCACTTGCCTCGACCACCATC
*
3556811 GGCACAAGATGGCC
1 GGCACAAGCTGGCC
3556825 CCTGGTGTAG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 4 0.08
45 41 0.84
46 4 0.08
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.20
Consensus pattern (45 bp):
GGCACAAGCTGGCCTTTGGTACGGGCACTTGCCTCGACCACCATC
Found at i:3556831 original size:45 final size:45
Alignment explanation
Indices: 3556749--3556906 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 45
3556739 GTACTGGCAC
* * * *
3556749 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCTTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * **
3556794 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *
3556839 ATGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGAGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
*
3556884 TTGCCTCGACCACTATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3556907 TGCCGAGTCT
Statistics
Matches: 91, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:3557581 original size:26 final size:26
Alignment explanation
Indices: 3557545--3557595 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3557535 CTGGTCCAAT
3557545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3557571 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
3557596 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3558494 original size:23 final size:23
Alignment explanation
Indices: 3558464--3558519 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
3558454 TCGACCATCA
3558464 ATGGCACATGATGGCGCATGGTG
1 ATGGCACATGATGGCGCATGGTG
*
3558487 ATGGCACATGATGGCGTATGGTG
1 ATGGCACATGATGGCGCATGGTG
3558510 ATGGCACATG
1 ATGGCACATG
3558520 TATCGACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.23, C:0.16, G:0.38, T:0.23
Consensus pattern (23 bp):
ATGGCACATGATGGCGCATGGTG
Found at i:3558667 original size:89 final size:90
Alignment explanation
Indices: 3558524--3558717 Score: 216
Period size: 89 Copynumber: 2.2 Consensus size: 90
3558514 CACATGTATC
* * * ** **
3558524 GACCATCATCGGCACAGGCTGCCCTTTGGTACGGGCACTTTCCTCGACTGCCATC-GACACAAGC
1 GACCACCATCGGCACAGGCGGCCCTTTGGTACGGGCACTTGCCTCGACCACCATCAG-CACAAAA
3558588 TAGG-CCCTGGTGCGGGCGGTTACCTT
65 T-GGCCCCTGGTGCGGGCGGTTACCTT
* * *
3558614 GATCACCATCGGCACATGCGGCCC-TTGGTACGGGTGA-TTGCCTCGACCACCATCAGCACAAAA
1 GACCACCATCGGCACAGGCGGCCCTTTGGTACGGG-CACTTGCCTCGACCACCATCAGCACAAAA
* **
3558677 TGGCCCCTGGTGCGGGCTGTTGGCTT
65 TGGCCCCTGGTGCGGGCGGTTACCTT
3558703 GACCACCATCGGCAC
1 GACCACCATCGGCAC
3558718 GTGCCGAGCC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
88 2 0.02
89 63 0.72
90 22 0.25
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.21
Consensus pattern (90 bp):
GACCACCATCGGCACAGGCGGCCCTTTGGTACGGGCACTTGCCTCGACCACCATCAGCACAAAAT
GGCCCCTGGTGCGGGCGGTTACCTT
Found at i:3558709 original size:45 final size:44
Alignment explanation
Indices: 3558592--3558717 Score: 128
Period size: 45 Copynumber: 2.8 Consensus size: 44
3558582 ACAAGCTAGG
* * * **
3558592 CCCTGGTGCGGGCGGTTACCTTGATCACCATCGGCACATGCGGC
1 CCCTGGTGCGGGCTGTTGCCTTGACCACCATCGGCACAAACGGC
* * * * *
3558636 CCTTGGTACGGG-TGATTGCCTCGACCACCATCAGCACAAAATGGC
1 CCCTGGTGCGGGCTG-TTGCCTTGACCACCATCGGCAC-AAACGGC
*
3558681 CCCTGGTGCGGGCTGTTGGCTTGACCACCATCGGCAC
1 CCCTGGTGCGGGCTGTTGCCTTGACCACCATCGGCAC
3558718 GTGCCGAGCC
Statistics
Matches: 64, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.02
44 28 0.44
45 33 0.52
46 2 0.03
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (44 bp):
CCCTGGTGCGGGCTGTTGCCTTGACCACCATCGGCACAAACGGC
Found at i:3559212 original size:26 final size:26
Alignment explanation
Indices: 3559161--3559213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3559151 TTGGTCTGAT
**
3559161 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3559187 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3559213 C
1 C
3559214 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3559868 original size:45 final size:45
Alignment explanation
Indices: 3559819--3559957 Score: 120
Period size: 45 Copynumber: 3.1 Consensus size: 45
3559809 GCCTATACCG
*
3559819 CCATCGGCACAAGTCGGGCTCTGGTGCGAGCGGTTGCCTTGACCA
1 CCATCGACACAAGTCGGGCTCTGGTGCGAGCGGTTGCCTTGACCA
* * * * * * * *
3559864 CCATCGACCCAAGAT-GGCCCCTGGTACGGGCAGTTGCATTGAACA
1 CCATCGACACAAG-TCGGGCTCTGGTGCGAGCGGTTGCCTTGACCA
* * * * *
3559909 CCATCGACACATG-CTGGGCTGTGGCGCGAACGGTTGCCTCGACCA
1 CCATCGACACAAGTC-GGGCTCTGGTGCGAGCGGTTGCCTTGACCA
3559954 CCAT
1 CCAT
3559958 TGGCACATGC
Statistics
Matches: 69, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
45 68 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (45 bp):
CCATCGACACAAGTCGGGCTCTGGTGCGAGCGGTTGCCTTGACCA
Found at i:3560441 original size:26 final size:26
Alignment explanation
Indices: 3560405--3560456 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3560395 ACCAGTCCCA
*
3560405 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
3560431 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
3560457 GCGTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:3560798 original size:26 final size:26
Alignment explanation
Indices: 3560762--3560814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3560752 CCAGTCTGAT
3560762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3560788 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3560814 C
1 C
3560815 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3562394 original size:26 final size:26
Alignment explanation
Indices: 3562355--3562407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3562345 CCCATCCCAT
3562355 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3562381 CTTAGATTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3562407 C
1 C
3562408 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3562762 original size:26 final size:26
Alignment explanation
Indices: 3562711--3562763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3562701 CCGGTCTAAT
*
3562711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3562737 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
3562763 C
1 C
3562764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3563897 original size:45 final size:45
Alignment explanation
Indices: 3563663--3563908 Score: 151
Period size: 45 Copynumber: 5.5 Consensus size: 45
3563653 GGCACATGCA
* * * *
3563663 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGC-ACTTGCC
1 TCGACCACCATCGGCACATGCTGGCCC-CTGGTGCGGGCGA-TTGCC
* * * * * ** * * *
3563708 CCGACCGCCATCGGCACAAGTTAGG-CCTTGGTATGAGCGGTTACC
1 TCGACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCGATTGCC
* * * *
3563753 TCGATCACCATCGACACATG-TCGACCCTTGGTGCGGGCGATTGCC
1 TCGACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCGATTGCC
* * * ** * *
3563798 TCGACCACCATCGGCCCAAGATGGCCCCCAGTGTGGGC-AGTTGCA
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGA-TTGCC
* * * *
3563843 TTGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGCGATTGCC
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGATTGCC
3563888 TCGACCACCATCGGCACATGC
1 TCGACCACCATCGGCACATGC
3563909 CGAGCCCTGG
Statistics
Matches: 150, Mismatches: 44, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
44 3 0.02
45 142 0.95
46 4 0.03
47 1 0.01
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGATTGCC
Found at i:3564396 original size:26 final size:26
Alignment explanation
Indices: 3564345--3564397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3564335 TTGGTCCGAT
* *
3564345 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3564371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3564397 C
1 C
3564398 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3564741 original size:26 final size:26
Alignment explanation
Indices: 3564701--3564752 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3564691 CGGTCTGATT
3564701 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
3564727 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
3564753 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:3566164 original size:13 final size:13
Alignment explanation
Indices: 3566146--3566170 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3566136 CAATGGCATA
3566146 TGATGGCACATGG
1 TGATGGCACATGG
3566159 TGATGGCACATG
1 TGATGGCACATG
3566171 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3566262 original size:45 final size:44
Alignment explanation
Indices: 3566173--3566410 Score: 199
Period size: 45 Copynumber: 5.3 Consensus size: 44
3566163 GGCACATGCA
* * * **
3566173 TCGACCATCATCGGCACAAGCT-GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC--TGGTGCAGGCGGTTGCC
* * *
3566218 TCGACCACCATCGACACAAGCTAGGCCCTGGTGCAAGCAGTTGCC
1 TCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGGCGGTTGCC
* * * * *
3566263 TTGACTACCATCGGCACATGCTGGCCCTTGGTGTAGGCGATTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC-TGGTGCAGGCGGTTGCC
* * * *
3566308 TCAACCACCATCGGCACAAGATGGCCCCCGGTGCAGGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGG-CCCTGGTGCAGGCGGTTGCC
* * * * * *
3566353 TGGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGGCGGTTGCC
*
3566398 TTGACCACCATCG
1 TCGACCACCATCG
3566411 ACATATGCCG
Statistics
Matches: 153, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
44 5 0.03
45 139 0.91
46 5 0.03
47 4 0.03
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.20
Consensus pattern (44 bp):
TCGACCACCATCGGCACAAGCTGGCCCTGGTGCAGGCGGTTGCC
Found at i:3566294 original size:90 final size:89
Alignment explanation
Indices: 3566181--3566413 Score: 238
Period size: 90 Copynumber: 2.6 Consensus size: 89
3566171 CATCGACCAT
* * *
3566181 CATCGGCACAAGCT-GCCCTTTGGTACGGGCACTTGCCTCGACCACCATCGACACAAGCTAGG-C
1 CATCGGCACATGCTGGCCC-TTGGTGCGGGCA-TTGCCTCGACCACCATCGACACAAGAT-GGCC
* * *
3566244 CCTGGTGCAAGCAGTTGCCTTG-ACTAC
63 CCCGGTGCAAGCAGTTGCATGGAAC-AC
** * *
3566271 CATCGGCACATGCTGGCCCTTGGTGTAGGCGATTGCCTCAACCACCATCGGCACAAGATGGCCCC
1 CATCGGCACATGCTGGCCCTTGGTGCGGGC-ATTGCCTCGACCACCATCGACACAAGATGGCCCC
* *
3566336 CGGTGCAGGCGGTTGCATGGAACAC
65 CGGTGCAAGCAGTTGCATGGAACAC
* * ** *
3566361 CATCGGCACATGCTGGGCCGTGGTGCGGGTGGTTGCCTTGACCACCATCGACA
1 CATCGGCACATGCTGGCCCTTGGTGCGGG-CATTGCCTCGACCACCATCGACA
3566414 TATGCCGAGC
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
89 2 0.02
90 108 0.92
91 7 0.06
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (89 bp):
CATCGGCACATGCTGGCCCTTGGTGCGGGCATTGCCTCGACCACCATCGACACAAGATGGCCCCC
GGTGCAAGCAGTTGCATGGAACAC
Found at i:3567980 original size:13 final size:13
Alignment explanation
Indices: 3567962--3568005 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
3567952 CAATGGCACA
3567962 TGATGGCATATGG
1 TGATGGCATATGG
*
3567975 TGATGGCACA---
1 TGATGGCATATGG
3567985 TGATGGCATATGG
1 TGATGGCATATGG
3567998 TGATGGCA
1 TGATGGCA
3568006 CATGCATCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 9 0.35
13 17 0.65
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.27
Consensus pattern (13 bp):
TGATGGCATATGG
Found at i:3567984 original size:23 final size:23
Alignment explanation
Indices: 3567954--3568009 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
3567944 TCGACCATCA
3567954 ATGGCACATGATGGCATATGGTG
1 ATGGCACATGATGGCATATGGTG
3567977 ATGGCACATGATGGCATATGGTG
1 ATGGCACATGATGGCATATGGTG
3568000 ATGGCACATG
1 ATGGCACATG
3568010 CATCGACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (23 bp):
ATGGCACATGATGGCATATGGTG
Found at i:3568113 original size:45 final size:44
Alignment explanation
Indices: 3568064--3568209 Score: 166
Period size: 45 Copynumber: 3.2 Consensus size: 44
3568054 GCCTCAACCG
* *
3568064 CCATCAGCACAAGCTAGGCCCTGGTGCAGGCGGTTGCTTCGACCA
1 CCATCAGCACAAGCT-GGCCCTGGTGCGGGCGGTTGCATCGACCA
* * * *
3568109 CCATCGGCATAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACA
1 CCATCAGCACAAGCTGG-CCCTGGTGCGGGCGGTTGCATCGACCA
* * * *
3568154 CCATCAGCACATGCTGCGCCGTGGTGCGGGCGGTTGCCTCGACGA
1 CCATCAGCACAAGCTG-GCCCTGGTGCGGGCGGTTGCATCGACCA
*
3568199 CCATCGGCACA
1 CCATCAGCACA
3568210 TGCCGATCAC
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
44 2 0.02
45 81 0.96
46 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (44 bp):
CCATCAGCACAAGCTGGCCCTGGTGCGGGCGGTTGCATCGACCA
Found at i:3568555 original size:26 final size:26
Alignment explanation
Indices: 3568526--3568578 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3568516 CCAATCCGAT
* *
3568526 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
3568552 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3568578 C
1 C
3568579 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3569570 original size:45 final size:45
Alignment explanation
Indices: 3569521--3569627 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
3569511 ATCCGGGCAC
* *
3569521 TTGCCTTGACCGCCATCGGCACAAGCTGGGCCT-TGGTATGGATGG
1 TTGCCTTGACCACCATCGGCACAAGCTGGG-CTGTGGTACGGATGG
** * *
3569566 TTGCCTTGACCACCATCGGCACTTGCTGGGCTGTGGTGCGGGTGG
1 TTGCCTTGACCACCATCGGCACAAGCTGGGCTGTGGTACGGATGG
*
3569611 TTGCCTCGACCACCATC
1 TTGCCTTGACCACCATC
3569628 AGTACATGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 2 0.04
45 52 0.96
ACGTcount: A:0.13, C:0.30, G:0.32, T:0.25
Consensus pattern (45 bp):
TTGCCTTGACCACCATCGGCACAAGCTGGGCTGTGGTACGGATGG
Found at i:3571147 original size:45 final size:45
Alignment explanation
Indices: 3571098--3571223 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 45
3571088 ACGGGCACTC
* * *
3571098 GCCTCGACCGCCATCGGCATAAGCTGGGCCCTGGTGCGAGCGGTT
1 GCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTACGAGCGATT
* * * * * *
3571143 GCCTCGATCACCATTGGCACATGCT-AGCCCTTGGTACGGGCGATT
1 GCCTCGACCACCATCGGCATAAGCTGGGCCC-TGGTACGAGCGATT
* * * *
3571188 GCCTCGACCAACATCAGCATAAGATGGCCCCTGGTA
1 GCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTA
3571224 TGGCCTGTTA
Statistics
Matches: 61, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
44 4 0.07
45 54 0.89
46 3 0.05
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.20
Consensus pattern (45 bp):
GCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTACGAGCGATT
Found at i:3571180 original size:90 final size:90
Alignment explanation
Indices: 3571070--3571258 Score: 213
Period size: 90 Copynumber: 2.1 Consensus size: 90
3571060 CCATCATCGA
** * * * *
3571070 CACATGCTGCCCTTTCGTACGGGC-ACTCGCCTCGACCGCCATCGGCATAAGCTGGGCCCTGGTG
1 CACATGCTGCCCTTTCGTACGGGCGA-TCGCCTCGACCAACATCAGCATAAGATGGCCCCTGGTA
* * *
3571134 CGAG-CGGTTGCCTCGATCACCATTGG
65 CG-GCCGGTTACATCGAACACCATTGG
* *
3571160 CACATGCTAGCCC-TTGGTACGGGCGATTGCCTCGACCAACATCAGCATAAGATGGCCCCTGGTA
1 CACATGCT-GCCCTTTCGTACGGGCGATCGCCTCGACCAACATCAGCATAAGATGGCCCCTGGTA
* *
3571224 TGGCCTGTTACATCGAACACCATTGG
65 CGGCCGGTTACATCGAACACCATTGG
3571250 CACATGCTG
1 CACATGCTG
3571259 GGCCGTGGTG
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
89 2 0.02
90 76 0.92
91 5 0.06
ACGTcount: A:0.19, C:0.33, G:0.26, T:0.22
Consensus pattern (90 bp):
CACATGCTGCCCTTTCGTACGGGCGATCGCCTCGACCAACATCAGCATAAGATGGCCCCTGGTAC
GGCCGGTTACATCGAACACCATTGG
Found at i:3571298 original size:45 final size:45
Alignment explanation
Indices: 3571186--3571300 Score: 104
Period size: 45 Copynumber: 2.6 Consensus size: 45
3571176 GTACGGGCGA
* * *
3571186 TTGCCTCGACCAACATCAGCATAAGATGGCCCCTGGTATGGCCTG
1 TTGCCTCGACCAACATCAGCACATGATGGCCCCTGGTATGGCCAG
* * * * ** * * * *
3571231 TTACATCGAACACCATTGGCACATGCTGGGCCGTGGTGTGGCCAG
1 TTGCCTCGACCAACATCAGCACATGATGGCCCCTGGTATGGCCAG
*
3571276 TTGCCTCGACCATCATCAGCACATG
1 TTGCCTCGACCAACATCAGCACATG
3571301 TCGAGCCCCA
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (45 bp):
TTGCCTCGACCAACATCAGCACATGATGGCCCCTGGTATGGCCAG
Found at i:3571854 original size:18 final size:18
Alignment explanation
Indices: 3571831--3571868 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
3571821 GGCACTGAGC
3571831 ATAATGCGCAAGTTAGGG
1 ATAATGCGCAAGTTAGGG
3571849 ATAATGCGCAAGTTAGGG
1 ATAATGCGCAAGTTAGGG
3571867 AT
1 AT
3571869 CAACCCGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.24
Consensus pattern (18 bp):
ATAATGCGCAAGTTAGGG
Found at i:3572451 original size:26 final size:26
Alignment explanation
Indices: 3572412--3572464 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3572402 TCGGTCCGAT
*
3572412 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
** *
3572438 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
3572464 C
1 C
3572465 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:3572849 original size:26 final size:26
Alignment explanation
Indices: 3572813--3572863 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3572803 AGTCTGATCT
* *
3572813 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTAGGAATCAACTCCGTATGCC
3572839 TAGACTAGGAATCAACTCCGTATGC
1 TAGACTAGGAATCAACTCCGTATGC
3572864 TTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATCAACTCCGTATGCC
Found at i:3573205 original size:26 final size:26
Alignment explanation
Indices: 3573169--3573221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3573159 CTGGTCTAAT
3573169 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
3573195 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3573221 C
1 C
3573222 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3573351 original size:197 final size:196
Alignment explanation
Indices: 3572997--3573376 Score: 422
Period size: 197 Copynumber: 1.9 Consensus size: 196
3572987 TCCAGCTGAG
** * *
3572997 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAG
* * ** * * *
3573062 CCGGTCGGAGAGTTAGACTGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
66 CCAGCCGGAGAGGCAGACTGCACAAGCCAGGGATCGACCCAATCCCCCCTACATGCTACCGATCC
** * * * * *
3573127 TGCTACAGGTCCTGCTGCCGCAACCCTCGGGTCTGGTCTAATCTTAGACTGGGAATAAACTCCGT
131 CACTACAGGTCCTACTACCGCAACCCTC-AGTCTGATCCAATCTTAGACTGGGAATAAACTCCGT
3573192 AT
195 AT
* * * * *
3573194 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCA
* * * * * *
3573258 GCCAGCCTGAGAGGCAGGA-TGCGCAAGTCAGGGATCGACCCAATCCCCTCTACGTGCTGCCGAT
65 GCCAGCCGGAGAGGCA-GACTGCACAAGCCAGGGATCGACCCAATCCCCCCTACATGCTACCGAT
* * * *
3573322 CCCACTGCGGGTCCTACTATCGTAACCCTCAGTCTGATCCAATCTTAGACTGGGA
129 CCCACTACAGGTCCTACTACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGA
3573377 CCGCACTAGG
Statistics
Matches: 148, Mismatches: 33, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
196 23 0.16
197 123 0.83
198 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAG
CCAGCCGGAGAGGCAGACTGCACAAGCCAGGGATCGACCCAATCCCCCCTACATGCTACCGATCC
CACTACAGGTCCTACTACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATAAACTCCGTA
T
Found at i:3578240 original size:25 final size:25
Alignment explanation
Indices: 3578206--3578253 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
3578196 TCCGATCTTA
*
3578206 GACTGGGAATGAACTTCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
3578231 GACTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
3578254 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:3578437 original size:26 final size:26
Alignment explanation
Indices: 3578386--3578438 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3578376 CCTGTTCGAT
**
3578386 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3578412 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3578438 C
1 C
3578439 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3580826 original size:26 final size:26
Alignment explanation
Indices: 3580775--3580827 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3580765 CCTGTTCGAT
**
3580775 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3580801 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3580827 C
1 C
3580828 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3583649 original size:45 final size:45
Alignment explanation
Indices: 3583600--3583718 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 45
3583590 GCTGGGCCTT
3583600 GGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGAT-GGCCCCC
1 GGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATAGG-CCCC
* * * * * **
3583645 GGTGCGGGCGGTTG-CACGAACACCATCGGCACATGCTAGGCCGT
1 GGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATAGGCCCC
**
3583689 GGTGTAGGCGGTTGCCTCGACCACCATCGA
1 GGTGCGGGCGGTTGCCTCGACCACCATCGA
3583719 TAAATGCCGA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
44 32 0.53
45 28 0.47
ACGTcount: A:0.18, C:0.33, G:0.34, T:0.16
Consensus pattern (45 bp):
GGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATAGGCCCC
Found at i:3584327 original size:26 final size:26
Alignment explanation
Indices: 3584291--3584343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3584281 CTAGTCTAAT
3584291 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
3584317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
3584343 C
1 C
3584344 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:3586520 original size:26 final size:26
Alignment explanation
Indices: 3586491--3586543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3586481 CCGATCTGAT
3586491 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
3586517 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
3586543 C
1 C
3586544 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:3586672 original size:195 final size:195
Alignment explanation
Indices: 3586321--3586691 Score: 449
Period size: 195 Copynumber: 1.9 Consensus size: 195
3586311 TCCGACTGGG
* ** *
3586321 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * * *
3586386 CCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGCTATCGATCC
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
*** * *
3586451 TGTTGCTGGTCCTACTACCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
131 CACTGCGGGTCCTACTACCCAACCCTCGGTCCGATCTAATCTTAGACTAGGAATGAACTCCGTAT
* ** * * **
3586516 GCTTAGAC-TGAGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * * *
3586580 ACCGGCCAAAGAGGCAGGATGTGTAAG-CGGGGATCGACCCGATCCCCTCTACGTGCTGTCGATC
65 ACCGGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTATCGATC
* * *
3586644 CCACTGCGGGTCCTACTACCATAACCCTCGGTCTGGTCTAATCTTAGA
130 CCACTGCGGGTCCTACTACC-CAACCCTCGGTCCGATCTAATCTTAGA
3586692 TTGGGAGCAC
Statistics
Matches: 145, Mismatches: 29, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
194 50 0.34
195 95 0.66
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCGGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
CACTGCGGGTCCTACTACCCAACCCTCGGTCCGATCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:3587423 original size:13 final size:13
Alignment explanation
Indices: 3587405--3587429 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3587395 CAATGGCACA
3587405 TGATGGCACATGG
1 TGATGGCACATGG
3587418 TGATGGCACATG
1 TGATGGCACATG
3587430 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3587521 original size:45 final size:45
Alignment explanation
Indices: 3587467--3587577 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 45
3587457 CTTTGGTATG
* * * *
3587467 GGCACTTGCCTCGACCGCCATCGACACAAGCTTGG-CCCTGGTGCA
1 GGCAGTTGCCTCGACCACCATCGACACAAG-ATGGCCCCTGGTACA
* *
3587512 GGTAGTTGCCTCGACTACCATCGACACAAGATGGCCCCTGGTACA
1 GGCAGTTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTACA
* *
3587557 GGCAGTTGCATCGAACACCAT
1 GGCAGTTGCCTCGACCACCAT
3587578 TGGCACATGC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 3 0.05
45 52 0.95
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (45 bp):
GGCAGTTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTACA
Found at i:3588716 original size:482 final size:478
Alignment explanation
Indices: 3587848--3588848 Score: 1244
Period size: 482 Copynumber: 2.1 Consensus size: 478
3587838 TCAGCAGGCT
* * *
3587848 GGAGAGCCAGATTGTGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGTCAATCTCGCTA
1 GGAGAGCCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGTCAATCCCGCTA
* * * *
3587913 CAGGCCCCTCAGTCCGTTTGGGGCTTAGACCGAGAATGAACTCTGTATGCCTAAGTTAACCCACG
66 CAGGCCCCTCAGTCCGATTGGGGCTTAGACCAAGAATGAACTCTGTATGCCTAAGTCAACCCACA
**
3587978 AAACGAGCGTGCGGGCACTCAGCCCGTTGAAGAGGCAGATGCGCAAGCCAAGGATCGGCTCGATC
131 AAACGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGCAGATGCGCAAGCCAAGGATCGGCTCGATC
* *
3588043 CCCCTCTACGTGCTGCTGTCGGTCTGATCTTACATTAGGAATGAACTCCGTATGCTTAGACTGGG
196 CCCCTCTACGTGCTGCTGTCGGTCTGATCTTACATGAGGAATGAACTCCGTATGCTTAGACTAGG
* * * * * * * *
3588108 AATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGTCTGCGGGTGCTGAGCCGATCGGAGAG
261 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTCTACGGGCGCTGAGCAGACCGAAGAG
* *
3588173 GCATAATGTGTAAGTCGGGGTTCGACCTAGTCCCCCTCTGCGTGATTCCGATCCCGCTGCCACAA
326 GCATAATGTGCAAGCCGGGGTTCGACCTAGTCCCCCTCTGCGTGATTCCGATCCCGCTGCCACAA
* *
3588238 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAACG
391 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACG
3588303 AGCGTGCGGGCACTCAACCAGTG
456 AGCGTGCGGGCACTCAACCAGTG
** * * * *
3588326 GGAGAGCCAGAATGCGCAAGCTTAGGGTCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGTTA
1 GGAGAGCCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGTCAATCCCGCTA
* * * * *
3588391 CGGGTCCCTC-GATTCGATTGGGGTTTAGACCAATAATGAACT-TCGTATGCCTAAGTCAACCCA
66 CAGGCCCCTCAG-TCCGATTGGGGCTTAGACCAAGAATGAACTCT-GTATGCCTAAGTCAACCCA
* * * * *
3588454 CAAAACGAGCGTGTGGGCGCTCAGCCGGCCGAAGAGGCAAGATGCGTAAGCCGAGGATCGGCTCG
129 CAAAACGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGC-AGATGCGCAAGCCAAGGATCGGCTCG
* **
3588519 ATCCCCCTCTACGTGCTGCTGCTGCCGGTCTGATCTTAGACTGA-GAATGAACTTTGTATGCTTA
193 ATCCCCCTCTACGTGCTGCTG-T--CGGTCTGATCTTACA-TGAGGAATGAACTCCGTATGCTTA
* *
3588583 GACTAGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTACGGGCGCTGAGCTAG-
254 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTCTACGGGCGCTGAGC-AGA
* * * * * *
3588647 CCGAAGAGGCATAATGTGCAAGCCGGGGTTTG-GCTCGGTCCCTCTCTGCGT-ACTGT-CGGTCT
318 CCGAAGAGGCATAATGTGCAAGCCGGGGTTCGACCT-AGTCCCCCTCTGCGTGA-T-TCCGATCC
* * * *
3588709 TGCTGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
380 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAA
* * * * * *
3588774 CCCACGAAATGAGCGTGTGGGCGCTCTATCGACT-
445 CCCACGAAACGAGCGTGCGGGCACTC-AACCAGTG
* * ** * *
3588808 GAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCC
1 GGAGAGCCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCC
3588849 TCCTGCATGC
Statistics
Matches: 443, Mismatches: 68, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
477 2 0.00
478 139 0.31
479 45 0.10
480 1 0.00
481 3 0.01
482 245 0.55
483 8 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (478 bp):
GGAGAGCCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGTCAATCCCGCTA
CAGGCCCCTCAGTCCGATTGGGGCTTAGACCAAGAATGAACTCTGTATGCCTAAGTCAACCCACA
AAACGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGCAGATGCGCAAGCCAAGGATCGGCTCGATC
CCCCTCTACGTGCTGCTGTCGGTCTGATCTTACATGAGGAATGAACTCCGTATGCTTAGACTAGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTCTACGGGCGCTGAGCAGACCGAAGAG
GCATAATGTGCAAGCCGGGGTTCGACCTAGTCCCCCTCTGCGTGATTCCGATCCCGCTGCCACAA
CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACG
AGCGTGCGGGCACTCAACCAGTG
Found at i:3589823 original size:45 final size:45
Alignment explanation
Indices: 3589751--3589864 Score: 111
Period size: 45 Copynumber: 2.5 Consensus size: 45
3589741 TTGCCTTGAC
* * * *
3589751 CACCATCGGCACAAGATGGCCCCTGGTGCTGGCGGTTGCATCAAA
1 CACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCATCAAA
** * * * *
3589796 CACCATCGGCACATGCTGGGTCGTGGTGCGGGCAGTTGCCTCGAC
1 CACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCATCAAA
* *
3589841 CACCATCGACAAATGCTGAGCCCC
1 CACCATCGGCACATGCTG-GCCCC
3589865 GGTTAGCCCA
Statistics
Matches: 53, Mismatches: 15, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
45 51 0.96
46 2 0.04
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (45 bp):
CACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCATCAAA
Found at i:3590418 original size:26 final size:26
Alignment explanation
Indices: 3590382--3590434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3590372 CCGGTTCGAT
3590382 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
3590408 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
3590434 C
1 C
3590435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:3592080 original size:26 final size:26
Alignment explanation
Indices: 3592031--3592080 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3592021 GGTAGGATCA
*
3592031 TAGACTGGGAATGAACTGCATATGAT
1 TAGACTGGGAATGAACTCCATATGAT
*
3592057 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCATATG
3592081 CGTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGAT
Found at i:3593234 original size:45 final size:44
Alignment explanation
Indices: 3593185--3593398 Score: 173
Period size: 45 Copynumber: 4.8 Consensus size: 44
3593175 GTACAGGCAC
* *
3593185 TTGCCTCGATCCCCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGA-CCCCATCGGCACATGCTGGGCCCTGGTGCGGGCGG
* ** * * * *
3593230 TTGCCTCGATCACCATC-G-ACATGC-CAGCCTTGCTGTGGGCGA
1 TTGCCTCGA-CCCCATCGGCACATGCTGGGCCCTGGTGCGGGCGG
* * * * * *
3593272 TTGCCTCGACCACCTTCAGCACAAGATGGCCCCAGGTGCGGGCGG
1 TTGCCTCGACC-CCATCGGCACATGCTGGGCCCTGGTGCGGGCGG
* * * * *
3593317 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCAGGCAG
1 TTGCCTCG-ACCCCATCGGCACATGCTGGGCCCTGGTGCGGGCGG
*
3593362 TTGCCTCGACCACCATCGGCACATGCTGAGCCCTGGT
1 TTGCCTCGACC-CCATCGGCACATGCTGGGCCCTGGT
3593399 CACCCCCTGA
Statistics
Matches: 127, Mismatches: 36, Indels: 12
0.73 0.21 0.07
Matches are distributed among these distances:
41 1 0.01
42 24 0.19
43 6 0.05
44 7 0.06
45 87 0.69
46 2 0.02
ACGTcount: A:0.16, C:0.34, G:0.30, T:0.20
Consensus pattern (44 bp):
TTGCCTCGACCCCATCGGCACATGCTGGGCCCTGGTGCGGGCGG
Found at i:3601004 original size:45 final size:45
Alignment explanation
Indices: 3600955--3601153 Score: 197
Period size: 45 Copynumber: 4.4 Consensus size: 45
3600945 GTACGAGCAC
* * * *
3600955 TTGCCTCGA-CAGCCATCGGCATAAGCTGGGCCCTAGTGCGGGCGG
1 TTGCCTCGACCA-CCATCGGCACAAGCTGGGCCCTGGTGCAGGCAG
* * * * **
3601000 TTGCCTCGATCACCATCGGCACATGC-CGACCCTTGGTG-AGGGTG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCAGGCAG
* *
3601044 ATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCAG
1 -TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCAG
* * * *
3601090 TTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCAGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCAG
*
3601135 TTGTCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
3601154 TACATGCCGA
Statistics
Matches: 125, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
44 7 0.06
45 108 0.86
46 10 0.08
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCAG
Found at i:3601127 original size:90 final size:90
Alignment explanation
Indices: 3600955--3601153 Score: 231
Period size: 90 Copynumber: 2.2 Consensus size: 90
3600945 GTACGAGCAC
* * * * * * *
3600955 TTGCCTCGA-CAGCCATCGGCATAAGCTGGGCCCTAGTGCGGGCGGTTGCCTCGATCACCATCGG
1 TTGCCTCGACCA-CCATCGGCACAAGATGGCCCCTAGTGCAGGCAGTTGCATCGAACACCATCGG
* **
3601019 CACATGCCGACCCTTGGTG-AGGGTG
65 CACATGCCGACCCATGGTGCAGGCAG
*
3601044 ATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCAGTTGCATCGAACACCATCGG
1 -TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCAGTTGCATCGAACACCATCGG
* **
3601109 CACATGCTGGGCCATGGTGCAGGCAG
65 CACATGCCGACCCATGGTGCAGGCAG
*
3601135 TTGTCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
3601154 TACATGCCGA
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
90 86 0.93
91 6 0.07
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCAGTTGCATCGAACACCATCGGC
ACATGCCGACCCATGGTGCAGGCAG
Found at i:3603693 original size:26 final size:26
Alignment explanation
Indices: 3603664--3603716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3603654 CTAGTCCGAT
*
3603664 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
*
3603690 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
3603716 C
1 C
3603717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:3603965 original size:87 final size:89
Alignment explanation
Indices: 3603843--3604086 Score: 228
Period size: 90 Copynumber: 2.8 Consensus size: 89
3603833 TGATGGCACA
* * * * * *
3603843 TGCATCGACCATCATCGACACAGGCT-ACCCTTTGGTGT-GG-GCACTTGCCTCGATCGCCATCG
1 TGCATCGAACACCATCGACACATGCTGGCCC-TTGGTGTAGGTG-A-TTGCCTCGACCACCATCG
* * *
3603905 GCACAAG-GG-CCTTGGTGCAGGTGGT
63 GCACAAGAGGCCCCTGGTGCACGCGGT
* * *
3603930 TGCCTCGATCACCATCGACACATGCTGGCCCTTGGTGTAGGTGATTGCCTCGACCACCATCGGTA
1 TGCATCGAACACCATCGACACATGCTGGCCCTTGGTGTAGGTGATTGCCTCGACCACCATCGGCA
*
3603995 TAAGATGGCCCCTGGTGCACGCGGT
66 CAAGA-GGCCCCTGGTGCACGCGGT
* * * * * * * *
3604020 TGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGAAGGCGGTTGCCTTGACCACCATTGGCA
1 TGCATCGAACACCATCGACACATGCTGGCCCTTGGTGTAGGTGATTGCCTCGACCACCATCGGCA
3604085 CA
66 CA
3604087 TGTCGAGCCC
Statistics
Matches: 127, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
87 50 0.39
88 6 0.05
89 3 0.02
90 68 0.54
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.22
Consensus pattern (89 bp):
TGCATCGAACACCATCGACACATGCTGGCCCTTGGTGTAGGTGATTGCCTCGACCACCATCGGCA
CAAGAGGCCCCTGGTGCACGCGGT
Found at i:3604085 original size:45 final size:45
Alignment explanation
Indices: 3603887--3604088 Score: 185
Period size: 45 Copynumber: 4.6 Consensus size: 45
3603877 GTGTGGGCAC
* * * *
3603887 TTGCCTCGATCGCCATCGGCACAAG--GG-CCTTGGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCAGGCGG
* * * * *
3603929 TTGCCTCGATCACCATCGACACATGCTGGCCCTTGGTGTAGGTGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCAGGCGG
* * * * * *
3603974 TTGCCTCGACCACCATCGGTATAAGATGGCCCCTGGTGCACGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCAGGCGG
* * * * *
3604019 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGAAGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCAGGCGG
* *
3604064 TTGCCTTGACCACCATTGGCACATG
1 TTGCCTCGACCACCATCGGCACATG
3604089 TCGAGCCCCG
Statistics
Matches: 127, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
42 22 0.17
44 2 0.02
45 103 0.81
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCAGGCGG
Found at i:3604590 original size:26 final size:26
Alignment explanation
Indices: 3604540--3604592 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3604530 CCGGTCCAAT
* **
3604540 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTAAGTATG
3604566 CTTAGACCGGGAATGAACTAAGTATG
1 CTTAGACCGGGAATGAACTAAGTATG
3604592 C
1 C
3604593 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTAAGTATG
Found at i:3605996 original size:45 final size:44
Alignment explanation
Indices: 3605947--3606099 Score: 126
Period size: 45 Copynumber: 3.4 Consensus size: 44
3605937 TTAACTTGAT
* *
3605947 CACCATCGGCACATGCCGGCCCTTGGTGTGGCCGATTACATCAAC
1 CACCATCGGCACATGCCGGCCCCTGGTGTGGCCG-TTGCATCAAC
* * ** * * *
3605992 CACCATCAGCACAAGATGGCCCCTGGGGTGGGCGGTTGCATCAAA
1 CACCATCGGCACATGCCGGCCCCTGGTGT-GGCCGTTGCATCAAC
* * * * * * *
3606037 TACCATCGGCACATGCTGGGCCGTGGTGCGGGCTGTTGCTTCAAC
1 CACCATCGGCACATGCCGGCCCCTGGTG-TGGCCGTTGCATCAAC
*
3606082 CACCATCGACACATGCCG
1 CACCATCGGCACATGCCG
3606100 AGCTCCGGTC
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
45 79 0.95
46 4 0.05
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (44 bp):
CACCATCGGCACATGCCGGCCCCTGGTGTGGCCGTTGCATCAAC
Found at i:3606567 original size:26 final size:26
Alignment explanation
Indices: 3606538--3606588 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3606528 CGGTCCGATC
*
3606538 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
3606564 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
3606589 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:3608511 original size:26 final size:25
Alignment explanation
Indices: 3608475--3608526 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
3608465 CTAGTCCGAT
*
3608475 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGACTGAA-TCTGTATG
3608501 CTTAGACTGGGACTGAATCTGTATG
1 CTTAGACTGGGACTGAATCTGTATG
3608526 C
1 C
3608527 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGACTGAATCTGTATG
Found at i:3608793 original size:26 final size:26
Alignment explanation
Indices: 3608757--3608809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3608747 AGCTGGGGAT
3608757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3608783 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3608809 C
1 C
3608810 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3609892 original size:90 final size:91
Alignment explanation
Indices: 3609725--3609893 Score: 218
Period size: 90 Copynumber: 1.9 Consensus size: 91
3609715 GGCATAGGCT
* * ** *
3609725 ACCCTTTGGTACGGGCACTTGCCTCGACCGTCATCGACACAAGCTGGGCCCTGGTATGGGCGGTT
1 ACCCTTTGGTACGAGCAATTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTATGGGCGGTT
*
3609790 GCCTCAATCACCATTGGTGCATGCCG
66 GCATCAATCACCATTGGTGCATGCCG
* **
3609816 ACCC-TTGGTGCGAGCAATTGCCTCGACCACCATCGGTACAAGAT-GGCCCTTGGTATGGGCGGT
1 ACCCTTTGGTACGAGCAATTGCCTCGACCACCATCGACACAAGATGGGCCC-TGGTATGGGCGGT
3609879 TGCATCGAA-CACCAT
65 TGCATC-AATCACCAT
3609894 CGGCACATGC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
89 5 0.07
90 56 0.84
91 6 0.09
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (91 bp):
ACCCTTTGGTACGAGCAATTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTATGGGCGGTT
GCATCAATCACCATTGGTGCATGCCG
Found at i:3609929 original size:90 final size:90
Alignment explanation
Indices: 3609743--3609917 Score: 201
Period size: 90 Copynumber: 1.9 Consensus size: 90
3609733 GTACGGGCAC
** * * * *
3609743 TTGCCTCGACCGTCATCGACACAAGCTGGGCCCTGGTATGGGCGGTTGCCTCAATCACCATTGGT
1 TTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTATGGGCGGTTGCATCAATCACCATCGGC
* *
3609808 GCATGCCGACCCTTGGTGCGAGCAA
66 ACATGCCGACCCGTGGTGCGAGCAA
**
3609833 TTGCCTCGACCACCATCGGTACAAGAT-GGCCCTTGGTATGGGCGGTTGCATCGAA-CACCATCG
1 TTGCCTCGACCACCATCGACACAAGATGGGCCC-TGGTATGGGCGGTTGCATC-AATCACCATCG
* * *
3609896 GCACATGCTGGCTCGTGGTGCG
64 GCACATGCCGACCCGTGGTGCG
3609918 GGCGGTTGCC
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
89 5 0.07
90 63 0.90
91 2 0.03
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTATGGGCGGTTGCATCAATCACCATCGGC
ACATGCCGACCCGTGGTGCGAGCAA
Found at i:3610398 original size:26 final size:26
Alignment explanation
Indices: 3610358--3610408 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3610348 CGATCCGATC
3610358 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
3610384 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCATATG
3610409 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:3612830 original size:26 final size:26
Alignment explanation
Indices: 3612801--3612879 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
3612791 CCAGTCAGAT
3612801 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTTGGAATGAACTCCATATG
* **
3612827 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTTGGAATGAACTCCATATG
*
3612853 CTTAGAC-TGCGGATGAACTCCATATG
1 CTTAGACTTG-GAATGAACTCCATATG
3612879 C
1 C
3612880 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCATATG
Found at i:3614701 original size:45 final size:45
Alignment explanation
Indices: 3614582--3614736 Score: 159
Period size: 45 Copynumber: 3.4 Consensus size: 45
3614572 TGAGCACTTA
*
3614582 CCTCGACCGCCATCGGCACAAGCTGGGCCC-TGGTGCAGGCGATTG
1 CCTCGACCACCATCGGCACAAGCT-GGCCCTTGGTGCAGGCGATTG
* * * * * **
3614627 CCTCAATCACCATTGCCACATGCCAGCCCTTGGTGCAGGCGATTG
1 CCTCGACCACCATCGGCACAAGCTGGCCCTTGGTGCAGGCGATTG
* * * *
3614672 CCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCACGTGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGCCCTTGGTGCAGGCGATTG
* * *
3614717 CTTCGAACACCATCGACACA
1 CCTCGACCACCATCGGCACA
3614737 TGTTGGGTCA
Statistics
Matches: 87, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 4 0.05
45 83 0.95
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.19
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGCCCTTGGTGCAGGCGATTG
Found at i:3615607 original size:26 final size:26
Alignment explanation
Indices: 3615578--3615630 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3615568 CTGGTCTGAT
*
3615578 CTTAGACTAGGAACGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * *
3615604 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
3615630 C
1 C
3615631 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:3615791 original size:26 final size:26
Alignment explanation
Indices: 3615740--3615792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3615730 CCGGTCTGAT
*
3615740 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3615766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3615792 C
1 C
3615793 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3615843 original size:162 final size:162
Alignment explanation
Indices: 3615570--3615880 Score: 408
Period size: 162 Copynumber: 1.9 Consensus size: 162
3615560 CCCTCGGTCT
* *
3615570 GGTCTGATCTTAGACTAGGAACGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAA
1 GGTCTGATCTTAGACTAGGAACGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCAAA
* ** * * *
3615635 GTCAACACATGAAACGAGTGTGCAGGCGCTTAGCCGGCCAAAGAGGCAGGATGCATAAGCCGAGG
66 GTCAACACACGAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCAGAATGCATAAGCCGAGG
*
3615700 ATCAGCCCGGTCCCCCTCTACGTGCTGCTACC
131 ACCAGCCCGGTCCCCCTCTACGTGCTGCTACC
* * *
3615732 GGTCTGATCTTAGACTGGGAATGAACT-TCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
1 GGTCTGATCTTAGACTAGGAACGAACTCT-ATATGCTTAGACTGGGAATGAACTCCGTATGCCAA
* * * * * * * * *
3615796 AGTCAACCCACGAAATGAGCATGCGGGCACTAAGCTGGCCGAAGAGGCATAATGCGTAAGTCGGG
65 AGTCAACACACGAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCAGAATGCATAAGCCGAG
*
3615861 GACCAGCCTGGTCCCCCTCT
130 GACCAGCCCGGTCCCCCTCT
3615881 GCATACTGTC
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
161 1 0.01
162 125 0.99
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (162 bp):
GGTCTGATCTTAGACTAGGAACGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCAAA
GTCAACACACGAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCAGAATGCATAAGCCGAGG
ACCAGCCCGGTCCCCCTCTACGTGCTGCTACC
Found at i:3616150 original size:26 final size:26
Alignment explanation
Indices: 3616099--3616151 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
3616089 CCGGTCTGAT
* *
3616099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
3616125 CTTAGACTGGTG-ATAAACTCTATATG
1 CTTAGACTGG-GAATAAACTCCATATG
3616151 C
1 C
3616152 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:3617227 original size:26 final size:26
Alignment explanation
Indices: 3617191--3617243 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3617181 CTGGTCAAAT
3617191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3617217 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3617243 C
1 C
3617244 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3619212 original size:26 final size:26
Alignment explanation
Indices: 3619183--3619235 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3619173 TCGATCCGAT
3619183 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
3619209 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
3619235 C
1 C
3619236 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:3619350 original size:12 final size:12
Alignment explanation
Indices: 3619335--3619367 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
3619325 GTGCTGTCGA
*
3619335 TCCTGCTACGGG
1 TCCTACTACGGG
3619347 TCCTACTACGGG
1 TCCTACTACGGG
3619359 TCCTACTAC
1 TCCTACTAC
3619368 CCCAACCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.21, T:0.27
Consensus pattern (12 bp):
TCCTACTACGGG
Found at i:3621598 original size:159 final size:157
Alignment explanation
Indices: 3621001--3621600 Score: 481
Period size: 159 Copynumber: 3.7 Consensus size: 157
3620991 AACTCCATAT
** * * *
3621001 GCTTAGAGTGGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACAAGCATGCAGGCGCTAAGC
1 GCTTAGAGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG-
* * * * * *
3621066 CGACTGGAGAGGAATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
* * *
3621131 TGCTGCCACAACCCTCGATTCGACTGGG
130 CGCTGCCACAACCCTCGGTTAGACTGGG
* * * * * * * *
3621159 GTTTAGATGCGGAATGAACTATGTATGCCTAATCCAACCCACGAAATGAACGTGCTGGCGCTCAA
1 GCTTAGA-GTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
3621224 CTGACCGGACG-GGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCC-CTACGTGCTGCCAAT
65 C-GACCGGA-GAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* * * * *
3621287 CCTGCTACTGGTCCTGTTGTTGCAACCCTCGGTCCAGTCT-GA
128 CC--C-GCT-G-CC-------ACAACCCTCGGT-TAGACTGGG
* * * * * * * *
3621329 TCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAATGAGCGTACAGGCGCTGAG
1 GCTTAGAGT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * *
3621394 CCAGCCGAAGAGGCATAATGC-TCAAGCC-AGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGA
65 CGA-CCGGAGAGGCAGAATGCGT-AAGCCGA-GGATCGGCCCGGTCCCCCTCTACGTGCTGTCGA
* *
3621457 TCCCGCTGCCACAACCCTCGGTTTGGCTGGG
127 TCCCGCTGCCACAACCCTCGGTTAGACTGGG
* * *
3621488 GCTTAGACATGGAATGAACTCTGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGA-GTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
3621553 TCGATCGGAGAGGTAGAATGCGTAAGCCGAAGATTGGCCCGGTCCCCC
65 -CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCC
3621601 CTGCATGCAG
Statistics
Matches: 338, Mismatches: 77, Indels: 53
0.72 0.16 0.11
Matches are distributed among these distances:
158 24 0.07
159 181 0.54
160 6 0.02
161 2 0.01
162 1 0.00
163 2 0.01
166 2 0.01
167 1 0.00
168 2 0.01
169 3 0.01
170 96 0.28
171 18 0.05
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGAGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
GACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTTAGACTGGG
Found at i:3621618 original size:329 final size:329
Alignment explanation
Indices: 3621002--3621685 Score: 813
Period size: 329 Copynumber: 2.1 Consensus size: 329
3620992 ACTCCATATG
* *
3621002 CTTAGAGT-GGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACAAGCATGCAGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACAAGCATACAGGCGCTAAGC
* * * *
3621066 CGACTGGAGAGGAATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGAATAATGCGTAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
* * ** *
3621131 TGCTGCCACAACCCTCGATTCGACTGGGGTTTAGATGCGGAATGAACTATGTATGCCTAATCCAA
131 CGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACACGGAATGAACTATGTATGCCTAAGCCAA
* * * **
3621196 CCCACGAAATGAACGTGCTGGCGCTCAACTGACCGGACGGGCAGAATGTGCAAGCCGGGGATCGG
196 CCCACGAAACGAACGTGCGGGCGCTCAACTGACCGGACGGGCAGAATGCGCAAGCCGAAGATCGG
* * * * * ***
3621261 CTCGGTCCCCCCTACGTGCTGCCAATCCTGCTACTGGTCCTGTTGTTGCAACCCTCGGTCCAG-T
261 CCCGGTCCCCCCTACATGCAGCCAATCCTGCTACTAGTCCTGCTACCGCAACCCTCGGT-CAGAT
3621325 CTGAT
325 CTGAT
* * * * ** * *
3621330 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAATGAGCGTACAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACAAGCATACAGGCGCTAAGC
* *
3621395 C-AGCCGAAGAGGCATAATGC-TCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
66 CGA-CCGAAGAGGAATAATGCGT-AAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
* * * * * *
3621458 CCCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCGTAAGCC
129 CCCGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACACGGAATGAACTATGTATGCCTAAGCC
* * * * *
3621523 AACCCACGAAACGAGCGTGCGGGCGCTC-AGTCGATCGGA-GAGGTAGAATGCGTAAGCCGAAGA
194 AACCCACGAAACGAACGTGCGGGCGCTCAACT-GACCGGACG-GGCAGAATGCGCAAGCCGAAGA
* * * * * *
3621586 TTGGCCCGGTCCCCCCTGCATGCAGTCAATCCTGCTGCTAGTCTTGCTACCGCAACCCTCGGTCT
257 TCGGCCCGGTCCCCCCTACATGCAGCCAATCCTGCTACTAGTCCTGCTACCGCAACCCTCGGTCA
3621651 GATCTGAT
322 GATCTGAT
*
3621659 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
3621686 TTGGACTGAG
Statistics
Matches: 298, Mismatches: 52, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
328 14 0.05
329 284 0.95
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (329 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACAAGCATACAGGCGCTAAGC
CGACCGAAGAGGAATAATGCGTAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACACGGAATGAACTATGTATGCCTAAGCCAA
CCCACGAAACGAACGTGCGGGCGCTCAACTGACCGGACGGGCAGAATGCGCAAGCCGAAGATCGG
CCCGGTCCCCCCTACATGCAGCCAATCCTGCTACTAGTCCTGCTACCGCAACCCTCGGTCAGATC
TGAT
Found at i:3622594 original size:13 final size:13
Alignment explanation
Indices: 3622576--3622600 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3622566 CAAAGGCACA
3622576 TGATGGCACATGG
1 TGATGGCACATGG
3622589 TGATGGCACATG
1 TGATGGCACATG
3622601 CATTGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3622756 original size:45 final size:45
Alignment explanation
Indices: 3622642--3622757 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
3622632 GGTACGGGTA
* *
3622642 GTTGCCTCGACCACCATCGGCACAAGATGGCCCTCAGTGCGAGCG
1 GTTGCCTCGACCACCATCGGCACATGATGGCCCTCAGTGCAAGCG
* * * * * *
3622687 GTTGCATCGAACACCATCGGCACATGCTGGGTCGT-GGTGCAAGCG
1 GTTGCCTCGACCACCATCGGCACATGAT-GGCCCTCAGTGCAAGCG
3622732 GTTGCCTCGACCACCATCGGCACATG
1 GTTGCCTCGACCACCATCGGCACATG
3622758 TCGAGCCCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 56 0.93
46 4 0.07
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (45 bp):
GTTGCCTCGACCACCATCGGCACATGATGGCCCTCAGTGCAAGCG
Found at i:3623878 original size:45 final size:44
Alignment explanation
Indices: 3623810--3623937 Score: 123
Period size: 45 Copynumber: 2.9 Consensus size: 44
3623800 GCACGGTGAT
* * ** *
3623810 GGCACATGCATCGACCATTATCGGCACAGGCT-GCCCTTTGGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCC--TGGTACG
* * **
3623855 GGCACTTGCCTCGACCGCCATCGGCACAAGTTGGGCCCTGGTGTG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTACG
* *
3623900 GGCATTTGCCTCGACCACCATCGGCACAAGATGGCCCT
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCT
3623938 TGGTCCGAGC
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
44 6 0.09
45 59 0.86
47 4 0.06
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (44 bp):
GGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTACG
Found at i:3624020 original size:45 final size:45
Alignment explanation
Indices: 3623860--3624017 Score: 145
Period size: 45 Copynumber: 3.5 Consensus size: 45
3623850 GTACGGGCAC
* * * * **
3623860 TTGCCTCGACCGCCATCGGCACAAGTTGGGCCCTGGTGTGGGCAT
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * * *
3623905 TTGCCTCGACCACCATCGGCACAAGATGGCCCTTGGTCCGAGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * * * *
3623950 TTGCATCGAACACAATCGTCACATGCTGGGCCATGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* *
3623995 TTGCTTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
3624018 TGCCGAGCCC
Statistics
Matches: 89, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
Found at i:3626255 original size:45 final size:45
Alignment explanation
Indices: 3626091--3626333 Score: 195
Period size: 45 Copynumber: 5.4 Consensus size: 45
3626081 GGCACATGCA
* * * *
3626091 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC-CTGGTACGGGCGCTTGCC
* * *
3626136 TCGACCGCCATCGGCACAAGCT-GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC-CTGGTACGGGCGCTTGCC
* * * *
3626181 TCGATCACCATTGGCACAAGCTGGGCCCTGGTGA-GGGCGTTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGT-ACGGGCGCTTGCC
* * * * *
3626226 TCGACCACCATCGACACAAGATGGCCCCTGGTATGGGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGTACGGGCGCTTGCC
* * * ** * * * *
3626271 TCAAACACCATCGGCACATGCTGGGTCATGGTGCGGCCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGTACGGGCGCTTGCC
* *
3626316 TCTACCACCATCAGCACA
1 TCGACCACCATCGGCACA
3626334 TGTCGAGCCC
Statistics
Matches: 163, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.01
45 158 0.97
46 4 0.02
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGCCCCTGGTACGGGCGCTTGCC
Found at i:3626258 original size:90 final size:90
Alignment explanation
Indices: 3626131--3626327 Score: 216
Period size: 90 Copynumber: 2.2 Consensus size: 90
3626121 GTACGGGCAC
* * * * * * * *
3626131 TTGCCTCGACCGCCATCGGCACAAGCTGCCCTTTGGTACGGGCACTTGCCTCGATCACCATTGGC
1 TTGCCTCGACCACCATCGACACAAGATGCCCTCTGGTACGGGCACTTGCATCAAACACCATCGGC
* * *
3626196 ACAAGCTGGGCCCTGGTGAGGGCGT
66 ACAAGCTGGGCCATGGTGAGGCCGG
* **
3626221 TTGCCTCGACCACCATCGACACAAGATGGCCC-CTGGTATGGGCGGTTGCATCAAACACCATCGG
1 TTGCCTCGACCACCATCGACACAAGAT-GCCCTCTGGTACGGGCACTTGCATCAAACACCATCGG
* * *
3626285 CACATGCTGGGTCATGGTGCGGCCGG
65 CACAAGCTGGGCCATGGTGAGGCCGG
*
3626311 TTGCCTCTACCACCATC
1 TTGCCTCGACCACCATC
3626328 AGCACATGTC
Statistics
Matches: 88, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 84 0.95
91 4 0.05
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGATGCCCTCTGGTACGGGCACTTGCATCAAACACCATCGGC
ACAAGCTGGGCCATGGTGAGGCCGG
Found at i:3627183 original size:45 final size:45
Alignment explanation
Indices: 3627094--3627336 Score: 141
Period size: 45 Copynumber: 5.4 Consensus size: 45
3627084 GGCATATGCA
* * * **
3627094 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTATGGGC-ACTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCC-TTGGTGCGGGCGA-TTGCC
* * *
3627139 TCGACCGCCATCGGTACAAGCTGGGCCTTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCGATTGCC
* * * * * * * * *
3627184 TCGATCACAATCAGCATATGCCGGTCATTGGTGTGGGCGATTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCGATTGCC
* * * * * * *
3627229 TCGACCACCATCGGCATAAGAC-GGCCCCTGGTGTGAGCGATTACA
1 TCGACCACCATCGGCACAAG-CTGGGCCTTGGTGCGGGCGATTGCC
* * * * * * * *
3627274 TCAAACACCATCGGTACATGCTGGGCCATGGTGCAGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCGATTGCC
*
3627319 TCGACCACCATCGACACA
1 TCGACCACCATCGGCACA
3627337 TGGTGATGGT
Statistics
Matches: 146, Mismatches: 48, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
44 1 0.01
45 141 0.97
46 4 0.03
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCGATTGCC
Found at i:3627990 original size:45 final size:45
Alignment explanation
Indices: 3627941--3628108 Score: 156
Period size: 45 Copynumber: 3.7 Consensus size: 45
3627931 ATGCGAGCAC
* *
3627941 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCATGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGTGG
* * * * * * ** * *
3627986 TTGCCTTGACCACTATCGGCACAAGATGGCCCCTAGTGTAGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGTGG
* ** * *
3628031 TTGCATCGAATACCATCGGCACATGCTAGGCCATGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGTGG
* * *
3628076 TTGCCTCGACCACTATCGGCACATGCTGAGCCA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCA
3628109 CGGTCGACCC
Statistics
Matches: 90, Mismatches: 33, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGTGG
Found at i:3628419 original size:26 final size:26
Alignment explanation
Indices: 3628383--3628435 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3628373 TCGGTCCGAT
3628383 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
3628409 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
3628435 C
1 C
3628436 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:3628446 original size:162 final size:161
Alignment explanation
Indices: 3628250--3628826 Score: 510
Period size: 162 Copynumber: 3.6 Consensus size: 161
3628240 TTGTTCGTCG
* * * * * ** * * *
3628250 AGACCGGGAATGCACTACGTATGCCTAAGTCAACCCATGAAATGAGCGTATGAGCACTCAACCGA
1 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGCAGG
* *
3628315 CAAAAGAGGCAGGATGCGCAAGCCAAGGATCGGCTTGGTCCCCCTCTACGTGCTACTGTCGGTCC
66 CAAAAGAGGCAGGATGCGCAAGCCAAGGATCAGCCTGGTCCCCCTCTACGTGCT-CTGTCGGTCC
3628380 GATCTTAGACTGGGAATGAACTCTGTATGCTT
130 GATCTTAGACTGGGAATGAACTCTGTATGCTT
* *
3628412 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGTTGAGCAGG
1 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGCAGG
*** ** ** * * * * * * *
3628477 CTGGAGAGGCATAATGCGCAAGCCGTGGATAAGCCCGGTCCCCTTCTGCGTG--CTGTTGATCCA
66 CAAAAGAGGCAGGATGCGCAAGCCAAGGATCAGCCTGGTCCCCCTCTACGTGCTCTGTCGGTCCG
* * * ** **
3628540 ACTGCGGGT-CACTCGGTTTG--CT-TG-GGGCTT
131 A-T-C--TTAGACTGGGAATGAACTCTGTATGCTT
* * * * *
3628570 GGA-TCGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCT
1 AGACT-GGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGCA
* * * * *
3628633 GGCCAAAGAGGCAGGATGCGCAAGCCAAGGATCAACCTGGTCCCCCTCTACGTGCTGTTGCCAGT
64 GGCAAAAGAGGCAGGATGCGCAAGCCAAGGATCAGCCTGGTCCCCCTCTACGTGCT-CTGTCGGT
3628698 CCGATCTTAGACTGGGAATGAACTCTGTATGCTT
128 CCGATCTTAGACTGGGAATGAACTCTGTATGCTT
* * *
3628732 AGACAT-GGAATGAACTTCGTAT-CCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCAG
1 AGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGCAG
*** ** *
3628795 GCCGGAGAGGCATAATGCGCAAGCCATGGATC
65 GCAAAAGAGGCAGGATGCGCAAGCCAAGGATC
3628827 GGGTCGATCC
Statistics
Matches: 322, Mismatches: 76, Indels: 35
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.01
158 104 0.32
159 12 0.04
160 6 0.02
161 74 0.23
162 118 0.37
163 3 0.01
164 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (161 bp):
AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGCAGG
CAAAAGAGGCAGGATGCGCAAGCCAAGGATCAGCCTGGTCCCCCTCTACGTGCTCTGTCGGTCCG
ATCTTAGACTGGGAATGAACTCTGTATGCTT
Done.