Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 33 of 120
Found at i:3628887 original size:320 final size:317
Alignment explanation
Indices: 3628254--3629009 Score: 899
Period size: 320 Copynumber: 2.4 Consensus size: 317
3628244 TCGTCGAGAC
* * ** * * *
3628254 CGGGAATGCACTACGTATGCCTAAGTCAACCCATGAAATGAGCGTATGAGCACTCAACCGACAAA
1 CGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAATGAGCGTGTG-GGGCTCAGCCGGCCAA
* * * *
3628319 AGAGGCAGGATGCGCAAGCCAAGGATCGGCTTGGTCCCCCTCTACGTGCTACTGTCGGTCCGATC
64 AGAGGCAGGATGCGCAAGCCAAGGATCGACCTGGTCCCCCTCTACGTGCTACTGCCAGTCCGATC
3628384 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
129 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
* * *
3628449 TGAAACGAGCGTACGAGTGTTGAGCAGGCTGGAGAGGCATAATGCGCAAGCCGTGGATAAGCCCG
194 TGAAACGAGCGTACGAGTGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCATGGATAAGCCCG
* * ** **** **** *
3628514 GTCCCCTTCTGCGTGCTGTTGATCCAACTGCGGGTCACTCGGTTTGCTTGGGGCTTGGA
259 ATCCCCCTCTGCGTGCTGCCGATCCAACTGCACAACACTCGGTCCAATTGGGGCTTAGA
* *
3628573 TCGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCTGGCCA
1 -CGGGAATGAACTC-GTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGG-GCTCAGCCGGCCA
* **
3628638 AAGAGGCAGGATGCGCAAGCCAAGGATCAACCTGGTCCCCCTCTACGTGCTGTTGCCAGTCCGAT
63 AAGAGGCAGGATGCGCAAGCCAAGGATCGACCTGGTCCCCCTCTACGTGCTACTGCCAGTCCGAT
3628703 CTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTTCGTAT-CCTAAGTCAACC
128 CTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACC
* * ** **
3628766 CATGAAACGAGCGTGCGGGTGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCATGGATCGGGT
192 CATGAAACGAGCGTACGAGTGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCATGGATAAGCC
* * *
3628831 CGATCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCAATTGGGGCTTAGA
257 CGATCCCCCTCTGCGTGCTGCCGATCCAACTG-CACAACACTCGGTCCAATTGGGGCTTAGA
* * * * *
3628893 CATAGG-ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGAGGCTCAGCCGGTC
1 C--GGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGG-GGCTCAGCCGGCC
* * * * * * *
3628957 AGAGAGGCAGAATGCGTAAGTCGAGGATCGACCTTGTCCCTCC-CTGCGTGCTA
62 AAAGAGGCAGGATGCGCAAGCCAAGGATCGACCTGGTCCC-CCTCTACGTGCTA
3629010 TCGATCCTGC
Statistics
Matches: 370, Mismatches: 57, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
319 97 0.26
320 266 0.72
321 7 0.02
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (317 bp):
CGGGAATGAACTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGGCTCAGCCGGCCAAAG
AGGCAGGATGCGCAAGCCAAGGATCGACCTGGTCCCCCTCTACGTGCTACTGCCAGTCCGATCTT
AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
AAACGAGCGTACGAGTGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCATGGATAAGCCCGAT
CCCCCTCTGCGTGCTGCCGATCCAACTGCACAACACTCGGTCCAATTGGGGCTTAGA
Found at i:3629094 original size:26 final size:26
Alignment explanation
Indices: 3629058--3629110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3629048 CCGGTCCGAT
3629058 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* **
3629084 CTTAGGCTGGGGTTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3629110 C
1 C
3629111 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3630247 original size:26 final size:26
Alignment explanation
Indices: 3630211--3630263 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3630201 CTAGTCTGAT
3630211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3630237 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3630263 C
1 C
3630264 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3631358 original size:45 final size:45
Alignment explanation
Indices: 3631212--3631356 Score: 184
Period size: 45 Copynumber: 3.2 Consensus size: 45
3631202 CCTCGATCGT
3631212 CATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
1 CATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
* * * * *
3631257 CATCGACACAAGAT-GGCCACTGGTGCGGGTGGTTGCATCGAACAC
1 CATCGGCACAAGCTGGGCC-CTGGTGCGGGCGGTTGCCTCGACCAC
* * * *
3631302 CATCGGCACATGCTGGGCCGTGGTGCGAGCGATTGCCTCGACCAC
1 CATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
*
3631347 CATAGGCACA
1 CATCGGCACA
3631357 TGTCGAGCCC
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 4 0.05
45 75 0.90
46 4 0.05
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (45 bp):
CATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCAC
Found at i:3631833 original size:26 final size:26
Alignment explanation
Indices: 3631797--3631849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3631787 GCCAGTCGAT
*
3631797 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
3631823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
3631849 C
1 C
3631850 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:3632188 original size:26 final size:26
Alignment explanation
Indices: 3632152--3632204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3632142 CTGGTCTGAT
*
3632152 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3632178 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3632204 C
1 C
3632205 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3633220 original size:45 final size:45
Alignment explanation
Indices: 3633134--3633220 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
3633124 ACCGCCATTG
* * * * * *
3633134 GCACAAGCTGGGCCCTAGTGCGGGCGATTTCCTTAACCACCATCA
1 GCACAAGATGGCCCCTAGTGCGGGCGATTGCATCAAACACCATCA
* *
3633179 GCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCAAACACCA
1 GCACAAGATGGCCCCTAGTGCGGGCGATTGCATCAAACACCA
3633221 ATGGCACATG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (45 bp):
GCACAAGATGGCCCCTAGTGCGGGCGATTGCATCAAACACCATCA
Found at i:3634164 original size:158 final size:158
Alignment explanation
Indices: 3633879--3634165 Score: 357
Period size: 158 Copynumber: 1.8 Consensus size: 158
3633869 TCGGTCTGGC
* * * * * *
3633879 TGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCAC
1 TGGGGCTTAGACACGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAACGAGCATCCAGGCAC
* * * * *
3633944 TCAGTCGGTCGGAGAGCCAGAATGCTCAAGTCGAAGATCGACCCGATCCCTCTCTACCTGCTGCC
66 TCAGTCGGTCAGAGAGCAAGAATGCGCAAGCCGAAGATCGACCCGATCCCCCTCTACCTGCTGCC
3634009 GATCTCGCTATGGGTCCCTCGATCCGGT
131 GATCTCGCTATGGGTCCCTCGATCCGGT
3634037 TGGGGCTTAGAC-CGAGAATGAACT-TCGTATGCCAAAGCCAACCCACGAAACGAGCATCCAGGC
1 TGGGGCTTAGACACG-GAATGAACTCT-GTATGCCAAAGCCAACCCACGAAACGAGCATCCAGGC
* * * * * *
3634100 ACTCAGTCGGTCAGAGAGGTAAG-ATGCGCAAGCCTAGGATC-AGCTCGATCCCCCTCTGCGTGC
64 ACTCAGTCGGTCAGAGA-GCAAGAATGCGCAAGCCGAAGATCGA-CCCGATCCCCCTCTACCTGC
3634163 TGC
127 TGC
3634166 TTTCGGTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.03
158 102 0.94
159 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TGGGGCTTAGACACGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAACGAGCATCCAGGCAC
TCAGTCGGTCAGAGAGCAAGAATGCGCAAGCCGAAGATCGACCCGATCCCCCTCTACCTGCTGCC
GATCTCGCTATGGGTCCCTCGATCCGGT
Found at i:3634207 original size:26 final size:26
Alignment explanation
Indices: 3634178--3634230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3634168 TCGGTCCGAT
*
3634178 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3634204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3634230 C
1 C
3634231 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3634438 original size:479 final size:477
Alignment explanation
Indices: 3633524--3634445 Score: 1170
Period size: 479 Copynumber: 1.9 Consensus size: 477
3633514 TCCCTCTGCA
** *
3633524 TGCTACCGATCCCGCTACGGGTCCCTCGATCCGGTTGGGGCTTAGTTCGGGAATGAACTCCGTAT
1 TGCTACCGATCCCGCTACGGGTCCCTCGATCCGGTTGGGGCTTAGACCGAGAATGAACTCCGTAT
* * * * * * ** * * *
3633589 GCCTAAGCTAACCTACAAAATGAGCGTACGGGTGCTCAGTCGGTCGGAGAGGTAGGATGCGTAAG
66 GCCAAAGCCAACCCACAAAACGAGCATACAGGCACTCAGTCGGTCAGAGAGGTAAGATGCGCAAG
* *
3633654 TCGAGGATCAGCTCGATCCCCCTGTCCGTACTGCTGTCAGTCCGATCTTAGACGAGAATGAACTC
131 CCGAGGATCAGCTCGATCCCCCTCTCCGTACTGCTGTCAGTCCGATCTTAGACGAGAATGAACTC
* * * ** * * *
3633719 TGTATGCTTAGATTAGGAATGAAGTCTGTATGCCTAAGTCAACCCATGAAATGAGAGTGCTGGCA
196 TGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAACAGTGCGGGCA
* * * *
3633784 CTAAGCCGACCGGAGAGGCATAACGTGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACGTGCTGT
261 CTAAGCAGACCGGAGAGGCATAACGT-CAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGC
* *
3633849 CGGTCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTA
325 CAGTCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * *
3633914 AGCCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGGTCGGAGAGCCAGAATGCTCAAGTCGAA
390 AGCCAACCCACGAAACGAGCGAGCGGGCACTCAGCCGGTCGGAGAGCCAGAATGCTCAAGTCGAA
3633979 GATCGACCCGATCCCTCTCTACC
455 GATCGACCCGATCCCTCTCTACC
* * * *
3634002 TGCTGCCGATCTCGCTATGGGTCCCTCGATCCGGTTGGGGCTTAGACCGAGAATGAACTTCGTAT
1 TGCTACCGATCCCGCTACGGGTCCCTCGATCCGGTTGGGGCTTAGACCGAGAATGAACTCCGTAT
* *
3634067 GCCAAAGCCAACCCACGAAACGAGCATCCAGGCACTCAGTCGGTCAGAGAGGTAAGATGCGCAAG
66 GCCAAAGCCAACCCACAAAACGAGCATACAGGCACTCAGTCGGTCAGAGAGGTAAGATGCGCAAG
* * * * * *
3634132 CCTAGGATCAGCTCGATCCCCCTCTGCGTGCTGCTTTCGGTCCGATCTTAGACTGGGAATGAACT
131 CCGAGGATCAGCTCGATCCCCCTCTCCGTACTGCTGTCAGTCCGATCTTAGAC-GAGAATGAACT
* *
3634197 -TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACAAAATAATCA-TGCGG
195 CT-GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAA-CAGTGCGG
** * ** ** *
3634260 GTGCTGAGCAGGTCGGAGAGGCATAATACGT-AAGCCGGGGATCAGCCCGGTCCCTTTCTGCGTG
258 GCACTAAGCAGACCGGAGAGGCAT-A-ACGTCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTG
** * * *
3634324 CTGCCAGTCCCGTTGCTACAACCCTCAGT-TCGGTTGGGGCTTAGACATGGAATGAACTCCGTAT
321 CTGCCAGTCCCACTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * *
3634388 GCCTAAGCCAACCCACGAAACGAGCGAGCGAGG-GCTCGGCCGGTCGGAGAGGCAGAAT
385 GCCTAAGCCAACCCACGAAACGAGCGAGCG-GGCACTCAGCCGGTCGGAGAGCCAGAAT
3634446 ACGCAAGCTG
Statistics
Matches: 374, Mismatches: 63, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
478 158 0.42
479 208 0.56
480 4 0.01
481 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (477 bp):
TGCTACCGATCCCGCTACGGGTCCCTCGATCCGGTTGGGGCTTAGACCGAGAATGAACTCCGTAT
GCCAAAGCCAACCCACAAAACGAGCATACAGGCACTCAGTCGGTCAGAGAGGTAAGATGCGCAAG
CCGAGGATCAGCTCGATCCCCCTCTCCGTACTGCTGTCAGTCCGATCTTAGACGAGAATGAACTC
TGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAACAGTGCGGGCA
CTAAGCAGACCGGAGAGGCATAACGTCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCC
AGTCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCACGAAACGAGCGAGCGGGCACTCAGCCGGTCGGAGAGCCAGAATGCTCAAGTCGAAG
ATCGACCCGATCCCTCTCTACC
Found at i:3634570 original size:26 final size:26
Alignment explanation
Indices: 3634534--3634586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3634524 CTAGTCTGAT
3634534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3634560 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3634586 C
1 C
3634587 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3641459 original size:45 final size:45
Alignment explanation
Indices: 3641372--3641486 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
3641362 GTGTAGGCGA
* * * *
3641372 TTGCCTCAACCACCATCGACACAAGATGGCCCCTAGTGCGGGCAG
1 TTGCATCAACCACCATCGGCACATGATGGCCCCTAGTACGGGCAG
* * *
3641417 TTGCATCGAA-CACCATCGGCACATGATGGGCCGTGGTACGGGCAG
1 TTGCATC-AACCACCATCGGCACATGATGGCCCCTAGTACGGGCAG
* *
3641462 TTGCCTCAACCACCATTGGCACATG
1 TTGCATCAACCACCATCGGCACATG
3641487 CCGAGCGCCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
44 2 0.03
45 55 0.93
46 2 0.03
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (45 bp):
TTGCATCAACCACCATCGGCACATGATGGCCCCTAGTACGGGCAG
Found at i:3641978 original size:26 final size:26
Alignment explanation
Indices: 3641927--3641979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3641917 CCAGTCTGAT
* *
3641927 CTTAGACTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
*
3641953 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
3641979 C
1 C
3641980 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:3642298 original size:26 final size:26
Alignment explanation
Indices: 3642269--3642321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3642259 CCGATCTGAT
*
3642269 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3642295 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3642321 C
1 C
3642322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3644532 original size:26 final size:26
Alignment explanation
Indices: 3644503--3644555 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3644493 CCAGTCCGAT
3644503 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3644529 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3644555 C
1 C
3644556 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3646331 original size:26 final size:26
Alignment explanation
Indices: 3646291--3646342 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3646281 TGGTCTGATG
* *
3646291 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
3646317 TTAGACTAGGG-ATGAAATCCGTATGC
1 TTAGACT-GGGAATGAAATCCGTATGC
3646343 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:3647327 original size:90 final size:90
Alignment explanation
Indices: 3647229--3647418 Score: 267
Period size: 90 Copynumber: 2.1 Consensus size: 90
3647219 CATCGACCAT
* * *
3647229 CATCGGCACAGGCT-GCCCTTTGGTACGGGC-ACTTACCTCGACCGCCATCAGCACAAGCTGGGC
1 CATCGGCACAGGCTGGCCC-TTGGTACAGCCGA-TTACCTCGACCGCCATCAGCACAAGCTAGGC
3647292 CCTAGTACAGGCGGTTGCCTCGATCAC
64 CCTAGTACAGGCGGTTGCCTCGATCAC
* *
3647319 CATCGGCACATGCTGGCCCTTGGTGCAGCCGATTACCTCGACCGCCATCAGCACAAGCTAGGCCC
1 CATCGGCACAGGCTGGCCCTTGGTACAGCCGATTACCTCGACCGCCATCAGCACAAGCTAGGCCC
* * *
3647384 TAGTGCGGGTGGTTGCCTCGATCAC
66 TAGTACAGGCGGTTGCCTCGATCAC
*
3647409 CATCAGCACA
1 CATCGGCACA
3647419 TGCCAACCCT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
90 84 0.94
91 5 0.06
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.19
Consensus pattern (90 bp):
CATCGGCACAGGCTGGCCCTTGGTACAGCCGATTACCTCGACCGCCATCAGCACAAGCTAGGCCC
TAGTACAGGCGGTTGCCTCGATCAC
Found at i:3647419 original size:90 final size:90
Alignment explanation
Indices: 3647261--3647436 Score: 280
Period size: 90 Copynumber: 2.0 Consensus size: 90
3647251 GTACGGGCAC
* *
3647261 TTACCTCGACCGCCATCAGCACAAGCTGGGCCCTAGTACAGGCGGTTGCCTCGATCACCATCGGC
1 TTACCTCGACCGCCATCAGCACAAGCTAGGCCCTAGTACAGGCGGTTGCCTCGATCACCATCAGC
***
3647326 ACATGCTGGCCCTTGGTGCAGCCGA
66 ACATGCCAACCCTTGGTGCAGCCGA
* * *
3647351 TTACCTCGACCGCCATCAGCACAAGCTAGGCCCTAGTGCGGGTGGTTGCCTCGATCACCATCAGC
1 TTACCTCGACCGCCATCAGCACAAGCTAGGCCCTAGTACAGGCGGTTGCCTCGATCACCATCAGC
3647416 ACATGCCAACCCTTGGTGCAG
66 ACATGCCAACCCTTGGTGCAG
3647437 GTGATTGCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.19
Consensus pattern (90 bp):
TTACCTCGACCGCCATCAGCACAAGCTAGGCCCTAGTACAGGCGGTTGCCTCGATCACCATCAGC
ACATGCCAACCCTTGGTGCAGCCGA
Found at i:3647475 original size:90 final size:89
Alignment explanation
Indices: 3647261--3647511 Score: 245
Period size: 90 Copynumber: 2.8 Consensus size: 89
3647251 GTACGGGCAC
* ** * *
3647261 TTACCTCGACCGCCATCAGCACAAGCTGGGCCCTAGTACAGGCGGTTGCCTCGATCACCATCGGC
1 TTACCTAGACCGCCATCAGCACAAAATAGGCCCTAGTACGGGCGGTTGCCTCGATCACCATC-GC
***
3647326 ACATGCTGGCCCTTGGTGCAGCCGA
65 ACATGCCAACCCTTGGTGCAGCCGA
* ** * *
3647351 TTACCTCGACCGCCATCAGCACAAGCTAGGCCCTAGTGCGGGTGGTTGCCTCGATCACCATCAGC
1 TTACCTAGACCGCCATCAGCACAAAATAGGCCCTAGTACGGGCGGTTGCCTCGATCACCATC-GC
**
3647416 ACATGCCAACCCTTGGTGCAGGTGA
65 ACATGCCAACCCTTGGTGCAGCCGA
* ** * * * *
3647441 TTGCCTAGA-CGACCATTGGCCCAAAAT-GGCCCCTAGTACGGGCAGTTGCATCGAACACCATCG
1 TTACCTAGACCG-CCATCAGCACAAAATAGG-CCCTAGTACGGGCGGTTGCCTCGATCACCATCG
3647504 ACACATGC
64 -CACATGC
3647512 TGGGCCGTGG
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
89 5 0.04
90 131 0.96
ACGTcount: A:0.22, C:0.34, G:0.25, T:0.19
Consensus pattern (89 bp):
TTACCTAGACCGCCATCAGCACAAAATAGGCCCTAGTACGGGCGGTTGCCTCGATCACCATCGCA
CATGCCAACCCTTGGTGCAGCCGA
Found at i:3647554 original size:45 final size:45
Alignment explanation
Indices: 3647221--3647554 Score: 183
Period size: 45 Copynumber: 7.4 Consensus size: 45
3647211 GGCACATGCA
* * * * * *
3647221 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCACTTACC
1 TCGACCACCATCGGCACATGCTGGCCC-CTGGTGCGGGCAGTTGCC
* * * * * * * *
3647266 TCGACCGCCATCAGCACAAGCTGGGCCCTAGTACAGGCGGTTGCC
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCC
* * * * *
3647311 TCGATCACCATCGGCACATGCTGGCCCTTGGTGC-AGCCGATTACC
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCAG-TTGCC
* * * * **
3647356 TCGACCGCCATCAGCACAAGCTAGG-CCCTAGTGCGGGTGGTTGCC
1 TCGACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCAGTTGCC
* * *** *
3647401 TCGATCACCATCAGCACATGCCAACCCTTGGTGCAGGTG-A-TTGCC
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGC-GG-GCAGTTGCC
* * * * *** * * *
3647446 TAGACGACCATTGGCCCAAAATGGCCCCTAGTACGGGCAGTTGCA
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCC
* * * *
3647491 TCGAACACCATCGACACATGCTGGGCCGTGGTGCGGGCAGTTGCC
1 TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCC
3647536 TCGACCACCATCGGCACAT
1 TCGACCACCATCGGCACAT
3647555 ACCGAGCCCT
Statistics
Matches: 207, Mismatches: 73, Indels: 18
0.69 0.24 0.06
Matches are distributed among these distances:
43 1 0.00
44 6 0.03
45 190 0.92
46 9 0.04
47 1 0.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCAGTTGCC
Found at i:3648031 original size:26 final size:26
Alignment explanation
Indices: 3647995--3648047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3647985 CCGGTCTGAT
3647995 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
3648021 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3648047 C
1 C
3648048 CAAGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3648138 original size:161 final size:162
Alignment explanation
Indices: 3647859--3648305 Score: 560
Period size: 161 Copynumber: 2.8 Consensus size: 162
3647849 TCCAGTTGGG
* * * * *
3647859 GCTTAGACCGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAA
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
3647924 CCGGCCGAAGAGGC-TGATGCGCAATCCGAGGATTGACCCGATCCCCTTCTGCGTG-TGGTTGCC
66 CCGGTCGGAGAGGCATGATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCT-GCTGCC
* * *
3647987 GGTCTGATCTTAGACTGGGAATGAACTTCGTAT
130 GATCTGATCTTAGACTGGGAATGAACTCCCTAT
* * * *
3648020 GCTTAGACTGGGGATGAACTCTGTATGCC-AAGTCAACCCATGAAACGAGCGTACAGGCGCTCTG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
3648084 TCGGTCGGAGAGGCAGGATGCACAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCTGTCG
66 CCGGTCGGAGAGGCATGATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCTGCCG
3648149 ATCTGATCTTAGACTGGGAATGAACTCCCTAT
131 ATCTGATCTTAGACTGGGAATGAACTCCCTAT
* * * *
3648181 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
3648246 CCGATCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCTCGGTCCCCCTCTACGTGCTGC
66 CCGGTCGGAGAGGCATGATGCGCAAGCCGA-GGATCGGCTCGGTCCCCCTCTGCGTGCTGC
3648306 CGGTGCCACT
Statistics
Matches: 243, Mismatches: 39, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
160 40 0.16
161 122 0.50
162 81 0.33
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (162 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCATGATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCTGCCG
ATCTGATCTTAGACTGGGAATGAACTCCCTAT
Found at i:3648518 original size:133 final size:136
Alignment explanation
Indices: 3648325--3648596 Score: 345
Period size: 134 Copynumber: 2.0 Consensus size: 136
3648315 TGTGACAACC
* *
3648325 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGAGCTCAACCGGCCGAAGAGGC-TGA
1 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGAGCTCAACCGGCCGAAGAGGCAGGA
* * * * *
3648389 TGCGCAAGCTGAGGATTGACCCGATCCCCCTCTGCGTG-TGGTTGCCGGTCTGATCTTAGACTGG
66 TGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCT-GCTGCCGATCTGATCTTAGACTGG
3648453 G-ATGAA
130 GAATGAA
* * * *** *
3648459 CTCTGTATGCC-AAGTCAACCCATGAAATGAGCGTACAGGCGCTCTGTCGGCCGGAGAGGCAGGA
1 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGAGCTCAACCGGCCGAAGAGGCAGGA
* * * *
3648523 TGCACAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCTGTCGATCTGATCTTAGACTGGG
66 TGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCTGCCGATCTGATCTTAGACTGGG
3648588 AATGAA
131 AATGAA
3648594 CTC
1 CTC
3648597 CCTATGCTTA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
133 41 0.35
134 67 0.57
135 9 0.08
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (136 bp):
CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGAGCTCAACCGGCCGAAGAGGCAGGA
TGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCTGCCGATCTGATCTTAGACTGGG
AATGAA
Found at i:3648613 original size:26 final size:26
Alignment explanation
Indices: 3648577--3648629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3648567 TCGATCTGAT
*
3648577 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
3648603 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3648629 C
1 C
3648630 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3648905 original size:159 final size:158
Alignment explanation
Indices: 3648602--3648946 Score: 392
Period size: 159 Copynumber: 2.2 Consensus size: 158
3648592 AACTCCCTAT
* * * *
3648602 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * ** *
3648667 CAAGCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCCCCTCTGCGTGCTATTGGTCC
66 CAAGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATACCCCTCTGCGTGCTACCGATCC
* *
3648732 CACTGCGACAACCCTCGGTCCGG-CTGGG
131 CACTGCGACAACCCTCGATCCGGTCT-GA
* * *
3648760 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
** * *
3648824 GCTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTTACCCC-CTGCGTGCTACCGA
65 GCAAG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GATACCCCTCTGCGTGCTACCGA
*** * *
3648888 TCTTGCTGCCG-TAACCCTCGATCTGGTCTGA
128 TCCCACTG-CGACAACCCTCGATCCGGTCTGA
*
3648919 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
3648947 TTAGACTAGG
Statistics
Matches: 155, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
158 59 0.38
159 86 0.55
160 10 0.06
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CAAGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATACCCCTCTGCGTGCTACCGATCC
CACTGCGACAACCCTCGATCCGGTCTGA
Found at i:3648961 original size:26 final size:26
Alignment explanation
Indices: 3648920--3648970 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3648910 CTGGTCTGAT
3648920 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3648946 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
3648971 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3650262 original size:26 final size:26
Alignment explanation
Indices: 3650226--3650278 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3650216 TCGGTCTGAT
3650226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3650252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3650278 C
1 C
3650279 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3651596 original size:45 final size:45
Alignment explanation
Indices: 3651547--3651780 Score: 272
Period size: 45 Copynumber: 5.2 Consensus size: 45
3651537 GCCTCAGCCG
* * * ** *
3651547 CCATCGGCACAAT-CTAGGCCCTGGTGTGGGCGGTTGTATCGAACA
1 CCATCGGCAC-ATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
* *
3651592 CCATCGGTACATGCTGGGCCATGGTGTGGGCGGTTGCCTCGACCA
1 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
* * * *
3651637 CCATTGGAACATGCTGGGCCGTGGTACGGGCGGTTGCCTCGACCA
1 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
* *
3651682 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGCTACCTCGACCA
1 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
* * * * * *
3651727 CTATCGGCACATGTTGGGCCGTGTTGTGGGCGGTTGCCTCAACCA
1 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
3651772 CCATCGGCA
1 CCATCGGCA
3651781 TATGTCGAGC
Statistics
Matches: 162, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 2 0.01
45 160 0.99
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (45 bp):
CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
Found at i:3651707 original size:135 final size:135
Alignment explanation
Indices: 3651523--3651775 Score: 321
Period size: 135 Copynumber: 1.9 Consensus size: 135
3651513 GGCTGCCCTT
* * * * **
3651523 TGGTACGGGCACTTGCCTCAGCCGCCATCGGCACAATCTAGGCCCTGGTGTGGGCGGTTGTATCG
1 TGGTACGGGCACTTGCCTCAGCCACCATCGGCACAATCTAGGCCATGGTGCGGGCGGCTACATCG
* *
3651588 AACACCATCGGTACATGCTGGGCCATGGTGTGGGCGGTTGCCTCGACCACCATTGGAACATGCTG
66 AACACCATCGGCACATGCTGGGCCATGGTGTGGGCGGTTGCCTCAACCACCATTGGAACATGCTG
3651653 GGCCG
131 GGCCG
** * *
3651658 TGGTACGGGCGGTTGCCTC-GACCACCATCGGCAC-ATGCTGGGCCATGGTGCGGGCGGCTACCT
1 TGGTACGGGCACTTGCCTCAG-CCACCATCGGCACAAT-CTAGGCCATGGTGCGGGCGGCTACAT
* * * * *
3651721 CGACCACTATCGGCACATGTTGGGCCGTGTTGTGGGCGGTTGCCTCAACCACCAT
64 CGAACACCATCGGCACATGCTGGGCCATGGTGTGGGCGGTTGCCTCAACCACCAT
3651776 CGGCATATGT
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
134 3 0.03
135 96 0.97
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.21
Consensus pattern (135 bp):
TGGTACGGGCACTTGCCTCAGCCACCATCGGCACAATCTAGGCCATGGTGCGGGCGGCTACATCG
AACACCATCGGCACATGCTGGGCCATGGTGTGGGCGGTTGCCTCAACCACCATTGGAACATGCTG
GGCCG
Found at i:3652782 original size:195 final size:196
Alignment explanation
Indices: 3652420--3652785 Score: 465
Period size: 197 Copynumber: 1.9 Consensus size: 196
3652410 TTAGTATGGA
* *
3652420 ATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGGGTGCGGGCACTCAGCCAGCAGGAGAGG
1 ATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCAGGAGAGG
*
3652485 CAGAATGCGTAAGCTGAGGATCAGCCCGATCCCTTCCTACGTGCTGTCGATCCTACTGCTGGTCC
66 CAGAATGCGCAAGCTGAGGATCAGCCCGATCCCTT-CTACGTGCTGTCGATCCTACTGCTGGTCC
** * *
3652550 TACTATTGCAACCCTCATTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGG
130 TACTACAGCAACCCTCATCCAGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGG
3652615 GG
195 GG
* * * * * *
3652617 ATGAATTCTGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGAGCTCTCAGCCAGCTA-GAGAG
1 ATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGC-AGGAGAG
* * * *
3652681 GTAGGATGCGCAAGTTG-GGATC-GACCCGATCCCCTT-TACGTGCTGTCGATCCTGCTG-TGGG
65 GCAGAATGCGCAAGCTGAGGATCAG-CCCGAT-CCCTTCTACGTGCTGTCGATCCTACTGCT-GG
**
3652742 TCCTACTACAGCAACCCTTGGTCCAG-TCCAATCTTAGACTGGGA
127 TCCTACTACAGCAACCC-TCATCCAGATCCAATCTTAGACTGGGA
3652786 GGGCACTACG
Statistics
Matches: 145, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
194 1 0.01
195 56 0.39
196 15 0.10
197 72 0.50
198 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
ATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCAGGAGAGG
CAGAATGCGCAAGCTGAGGATCAGCCCGATCCCTTCTACGTGCTGTCGATCCTACTGCTGGTCCT
ACTACAGCAACCCTCATCCAGATCCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGG
G
Found at i:3653581 original size:45 final size:44
Alignment explanation
Indices: 3653530--3653741 Score: 163
Period size: 45 Copynumber: 4.7 Consensus size: 44
3653520 TGATGGCACA
* *
3653530 TGCATCGACCACCATCGGCACAATCTGGGCCCTTGTGCGGGCGAT
1 TGCATCGACCACCATCGGCACAAGCT-GGCCCTTGTACGGGCGAT
* * * * * * *
3653575 TACATCGATCACCATTGGCACAAGCCGGCCTTTGGTGCGGGTGAT
1 TGCATCGACCACCATCGGCACAAGCTGGCCCTT-GTACGGGCGAT
* * * * * *
3653620 TGCCTCGACCGCCATTGGCACAAGATGGCCCCTGCTACGGGTGAT
1 TGCATCGACCACCATCGGCACAAGCTGGCCCTTG-TACGGGCGAT
* * * * * *
3653665 TGCATCAAACACCATCGGCACATGCTAGGCCGTGGTACGGGCGGT
1 TGCATCGACCACCATCGGCACAAGCT-GGCCCTTGTACGGGCGAT
* * *
3653710 TGCCTCGACCACCATCGACACATGCTGAGCCC
1 TGCATCGACCACCATCGGCACAAGCTG-GCCC
3653742 CGATCGAACT
Statistics
Matches: 130, Mismatches: 33, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
44 8 0.06
45 117 0.90
46 5 0.04
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (44 bp):
TGCATCGACCACCATCGGCACAAGCTGGCCCTTGTACGGGCGAT
Found at i:3654205 original size:26 final size:26
Alignment explanation
Indices: 3654169--3654221 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3654159 TCGATCTGAT
*
3654169 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
3654195 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
3654221 C
1 C
3654222 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:3654568 original size:26 final size:25
Alignment explanation
Indices: 3654524--3654575 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
3654514 CCAGTCAGAT
*
3654524 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
3654549 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
3654575 C
1 C
3654576 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:3654721 original size:194 final size:195
Alignment explanation
Indices: 3654366--3654727 Score: 498
Period size: 194 Copynumber: 1.9 Consensus size: 195
3654356 TAGACATGGA
* * *
3654366 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGTGCTCAACCGACCAAAGAGG
* * ** * * *
3654431 CAGAATACGCAAGCTGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGCTGGTCCT
66 CAGAATACACAAGCCGGGGATCGACCCAATCCCCCTTGCATGCTATCGATCCCACTGCTGGTCCT
* *
3654496 GCTGCCGCAACCCTTGGTCCAGTCAGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTAGGG
131 GCTGCCACAACCCTTGGTCCAGTCAGATCTTACACTGGAATGAACTCTGTATGCTTAGACTAGGG
*
3654561 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGC-GGTGCTCAACCGACCAAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGTGCTCAACCGACCAAAGAGG
* *
3654625 CAGGATGCACAAGCCGGGGATCGACCCAAT-CCCCTCTGCATGCTATCGATCCCACTG-TGGGTC
66 CAGAATACACAAGCCGGGGATCGACCCAATCCCCCT-TGCATGCTATCGATCCCACTGCT-GGTC
* * **
3654688 CTGCTGTCATAACCCTTGGTCGGGTTC-GATCTTACACTGG
129 CTGCTGCCACAACCCTTGGTCCAG-TCAGATCTTACACTGG
3654728 GAGCGCACTA
Statistics
Matches: 145, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
193 6 0.04
194 98 0.68
195 41 0.28
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (195 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGTGCTCAACCGACCAAAGAGG
CAGAATACACAAGCCGGGGATCGACCCAATCCCCCTTGCATGCTATCGATCCCACTGCTGGTCCT
GCTGCCACAACCCTTGGTCCAGTCAGATCTTACACTGGAATGAACTCTGTATGCTTAGACTAGGG
Found at i:3655611 original size:90 final size:90
Alignment explanation
Indices: 3655517--3655708 Score: 219
Period size: 90 Copynumber: 2.1 Consensus size: 90
3655507 CGGGCACTTA
* * * * *
3655517 CCTCGACCGCCATAGGCACAAGTTGGGCCC-TGGTGCAGGCAGTTGCCTCGATCACCATCGGCAC
1 CCTCGACCACCATAGGCACAAGAT-GGCCCTTGGTACAGGCAGTTGCATCGAACACCATCGGCAC
*
3655581 ATG-TCGGTCCT-TGGTGTGGGCGAATG
65 ATGCT-GG-CCTGTGGGGTGGGCGAATG
* ** * *
3655607 CCTCGACCACCATCGGCACAAGATGGCCCTTGGTATGGGCGGTTGCATTGAACACCATCGGCACA
1 CCTCGACCACCATAGGCACAAGATGGCCCTTGGTACAGGCAGTTGCATCGAACACCATCGGCACA
* *
3655672 TGCTGGGCTGTGGGGTGGGCGATTG
66 TGCTGGCCTGTGGGGTGGGCGAATG
3655697 CCTCGACCACCA
1 CCTCGACCACCA
3655709 ACGATACATG
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
89 7 0.08
90 78 0.91
91 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (90 bp):
CCTCGACCACCATAGGCACAAGATGGCCCTTGGTACAGGCAGTTGCATCGAACACCATCGGCACA
TGCTGGCCTGTGGGGTGGGCGAATG
Found at i:3655638 original size:45 final size:45
Alignment explanation
Indices: 3655517--3655708 Score: 151
Period size: 45 Copynumber: 4.3 Consensus size: 45
3655507 CGGGCACTTA
* * * **
3655517 CCTCGACCGCCATAGGCACAAGTTGGGCCC-TGGTGCAGGC-AGTTG
1 CCTCGACCACCATCGGCACAAG-TCGGCCCTTGGTGTGGGCGA-TTG
* * * *
3655562 CCTCGATCACCATCGGCACATGTCGGTCCTTGGTGTGGGCGAATG
1 CCTCGACCACCATCGGCACAAGTCGGCCCTTGGTGTGGGCGATTG
* *
3655607 CCTCGACCACCATCGGCACAAGAT-GGCCCTTGGTATGGGCGGTTG
1 CCTCGACCACCATCGGCACAAG-TCGGCCCTTGGTGTGGGCGATTG
* * * * * *
3655652 CATTGAACACCATCGGCACATG-CTGG-GCTGTGGGGTGGGCGATTG
1 CCTCGACCACCATCGGCACAAGTC-GGCCCT-TGGTGTGGGCGATTG
3655697 CCTCGACCACCA
1 CCTCGACCACCA
3655709 ACGATACATG
Statistics
Matches: 115, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
44 7 0.06
45 106 0.92
46 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGTCGGCCCTTGGTGTGGGCGATTG
Found at i:3656195 original size:26 final size:26
Alignment explanation
Indices: 3656159--3656211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3656149 CCGGTCCGAT
*
3656159 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3656185 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3656211 C
1 C
3656212 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3656389 original size:159 final size:159
Alignment explanation
Indices: 3656186--3656473 Score: 380
Period size: 159 Copynumber: 1.8 Consensus size: 159
3656176 CTCTGTATGC
* * ** * * *
3656186 TTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTCAACC
* * *
3656251 GGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGAT-CCCCCTCTACCTACTACCGATCC
66 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCT-TACCTACTACCGATCC
3656315 CGCTACCACAACCCTCAATCTGACTGGGGT
130 CGCTACCACAACCCTCAATCTGACTGGGGT
* * * *
3656345 TTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTAAGGGTGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTCAACC
* * * * * *
3656410 GGTCGGAGAGGTAGAATGCGCAAGCCGAGGATTGGCTCGATCCCCCCTTACGTTCTACCGATCC
66 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTTACCTACTACCGATCC
3656474 TACTGCAAGT
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
159 102 0.94
160 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTCAACC
GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTTACCTACTACCGATCCC
GCTACCACAACCCTCAATCTGACTGGGGT
Found at i:3656544 original size:26 final size:26
Alignment explanation
Indices: 3656515--3656567 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3656505 CTGGTCCGAT
*
3656515 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
3656541 CTTAGATTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3656567 C
1 C
3656568 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:3657556 original size:45 final size:44
Alignment explanation
Indices: 3657502--3657628 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 44
3657492 CTTTGGTACG
* *
3657502 GGCACTTGCCTCGACCGCGATCGGCACAAGCTGGGCCCTAGTGCA
1 GGCAGTTGCCTCGACCAC-ATCGGCACAAGCTGGGCCCTAGTGCA
* * * *
3657547 GGCGGTTGCCTCGACCATCATCGGCACAAGATGGCCCCTGGTGCA
1 GGCAGTTGCCTCGACCA-CATCGGCACAAGCTGGGCCCTAGTGCA
* * *
3657592 GGCAGTTGCATCGAACACCATCGGCACATGCTGGGCC
1 GGCAGTTGCCTCGACCA-CATCGGCACAAGCTGGGCC
3657629 GTGCTGCGGG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 67 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.17
Consensus pattern (44 bp):
GGCAGTTGCCTCGACCACATCGGCACAAGCTGGGCCCTAGTGCA
Found at i:3658155 original size:26 final size:26
Alignment explanation
Indices: 3658119--3658169 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3658109 TCGGTTTGAT
3658119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3658145 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
3658170 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3658498 original size:26 final size:26
Alignment explanation
Indices: 3658462--3658514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3658452 CCGGTCTAAT
3658462 CTTAGACTAGCAATGAACT-TCGTATG
1 CTTAGACTAGCAATGAACTCT-GTATG
*
3658488 CTTAGACTAGCGATGAACTCTGTATG
1 CTTAGACTAGCAATGAACTCTGTATG
3658514 C
1 C
3658515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCTGTATG
Found at i:3659446 original size:45 final size:44
Alignment explanation
Indices: 3659397--3659604 Score: 152
Period size: 45 Copynumber: 4.6 Consensus size: 44
3659387 GCATGGTGAT
* * *
3659397 GGCACATGCATCGACCAACATCGGCACAGGCT-GCCCTTTGGTACG
1 GGCACTTGCATCGACCACCATCGGCACAAGCTGGCCC--TGGTACG
* * * *
3659442 GGCACTTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCG
1 GGCACTTGCATCGACCACCATCGGCACAAGCT-GGCCCTGGTACG
* * * *
3659487 GGCAGTTGCTTCGACCACCATCGGCACAAGATGGCCCTTGGTACA
1 GGCACTTGCATCGACCACCATCGGCACAAGCTGGCCC-TGGTACG
* * * * *
3659532 GGCGA-TTGCATTGAGCACCATCGGCACATGCT-GCACCGTGGTGCA
1 GGC-ACTTGCATCGACCACCATCGGCACAAGCTGGC-CC-TGGTACG
* ** *
3659577 AGCGGTTGCCTCGACCACCATCGGCACA
1 GGCACTTGCATCGACCACCATCGGCACA
3659605 TGCCGAGCCC
Statistics
Matches: 131, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
44 7 0.05
45 119 0.91
46 1 0.01
47 4 0.03
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (44 bp):
GGCACTTGCATCGACCACCATCGGCACAAGCTGGCCCTGGTACG
Found at i:3659553 original size:90 final size:90
Alignment explanation
Indices: 3659407--3659604 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 90
3659397 GGCACATGCA
* * * * * * *
3659407 TCGACCAACATCGGCACAGGCTGCCCTTTGGTACGGGCACTTGCCTCGATCGCCATCGGCACAAG
1 TCGACCACCATCGGCACAAGATGCCCTTTGGTACAGGCACTTGCATCGAGCACCATCGGCACAAG
** ** *
3659472 CTGGGCCCTGGTGCGGGCAGTTGCT
66 CTGCACCCTGGTGCAAGCAGTTGCC
*
3659497 TCGACCACCATCGGCACAAGATGGCCC-TTGGTACAGGCGA-TTGCATTGAGCACCATCGGCACA
1 TCGACCACCATCGGCACAAGAT-GCCCTTTGGTACAGGC-ACTTGCATCGAGCACCATCGGCACA
* * *
3659560 TGCTGCACCGTGGTGCAAGCGGTTGCC
64 AGCTGCACCCTGGTGCAAGCAGTTGCC
3659587 TCGACCACCATCGGCACA
1 TCGACCACCATCGGCACA
3659605 TGCCGAGCCC
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
90 85 0.94
91 5 0.06
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (90 bp):
TCGACCACCATCGGCACAAGATGCCCTTTGGTACAGGCACTTGCATCGAGCACCATCGGCACAAG
CTGCACCCTGGTGCAAGCAGTTGCC
Found at i:3660094 original size:26 final size:26
Alignment explanation
Indices: 3660058--3660110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3660048 CCGATCCGAT
*
3660058 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3660084 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3660110 C
1 C
3660111 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3661424 original size:45 final size:45
Alignment explanation
Indices: 3661390--3661499 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
3661380 TGGGCACTTG
* * *
3661390 CCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTACGGGCGATTA
1 CCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGATTA
* * *
3661435 CTTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGATTA
* * *
3661480 CATCGAACACCATCGACACA
1 CCTCGACCACCATCGGCACA
3661500 TGCTGCAACG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.15
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGATTA
Found at i:3662048 original size:26 final size:26
Alignment explanation
Indices: 3661997--3662049 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3661987 CCGGTCCGAT
* *
3661997 CTTAGACTGGGAAAGAACTCCTTATG
1 CTTAGACTGGGAAAGAACACCGTATG
* *
3662023 CTTAGACTGGGAATGAGCACCGTATG
1 CTTAGACTGGGAAAGAACACCGTATG
3662049 C
1 C
3662050 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACACCGTATG
Found at i:3662368 original size:26 final size:26
Alignment explanation
Indices: 3662339--3662389 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3662329 CCGGTCCGAT
3662339 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
3662365 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTCGGAATGAACTCCGTAT
3662390 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:3663789 original size:45 final size:45
Alignment explanation
Indices: 3663735--3663834 Score: 103
Period size: 45 Copynumber: 2.2 Consensus size: 45
3663725 GGTTGACCTT
* * * *
3663735 TGGTATGGGCACTTGCCTCAACCGCCATC-GACACAAGCTAGGCCC
1 TGGTGTGGGCACTTACCTCAACCACCATCAG-CACAAGATAGGCCC
** * *
3663780 TGGTGTGGGCGGTTACCTCGACCACCATCAGCACAAGATGGGCCC
1 TGGTGTGGGCACTTACCTCAACCACCATCAGCACAAGATAGGCCC
*
3663825 TGGTGCGGGC
1 TGGTGTGGGC
3663835 GGTTGCATTG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
45 44 0.98
46 1 0.02
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
TGGTGTGGGCACTTACCTCAACCACCATCAGCACAAGATAGGCCC
Found at i:3663835 original size:45 final size:45
Alignment explanation
Indices: 3663766--3663894 Score: 150
Period size: 45 Copynumber: 2.9 Consensus size: 45
3663756 CCGCCATCGA
* * *
3663766 CACAAGCTAGGCCCTGGTGTGGGCGGTTACCTCGACCACCATCAG
1 CACAAGCTAGGCCCTGGTGCGGGCGGTTGCATCGACCACCATCAG
* * * * *
3663811 CACAAGATGGGCCCTGGTGCGGGCGGTTGCATTGAACACCATCGG
1 CACAAGCTAGGCCCTGGTGCGGGCGGTTGCATCGACCACCATCAG
* * * *
3663856 CACATGCTAGGTCGTGGTGCGGGCGGTTGCTTCGACCAC
1 CACAAGCTAGGCCCTGGTGCGGGCGGTTGCATCGACCAC
3663895 TATTGGCACA
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (45 bp):
CACAAGCTAGGCCCTGGTGCGGGCGGTTGCATCGACCACCATCAG
Found at i:3664677 original size:158 final size:158
Alignment explanation
Indices: 3664384--3664677 Score: 385
Period size: 158 Copynumber: 1.9 Consensus size: 158
3664374 AGCTCCATAT
* ** * *
3664384 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAA
* * * * * *
3664449 CCGATCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTCTGCGTGTTTCAGTCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGTGTCAATCC
3664514 CGCTACCACAACCCTTGATTTAGCTGGG
131 CGCTACCACAACCCTTGATTTAGCTGGG
* * *
3664542 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGCAAGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCA
** * *
3664606 ACCGACCGGAGAGGCAGAATGTGCAGGCCAAGGATCGACCCGGTCCCTC-CTACGTGCTGTCAAT
65 ACCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTACGTG-TGTCAAT
*
3664670 CCTGCTAC
129 CCCGCTAC
3664678 TGATCCTGCT
Statistics
Matches: 115, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 6 0.05
158 108 0.94
159 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGTGTCAATCC
CGCTACCACAACCCTTGATTTAGCTGGG
Found at i:3664754 original size:26 final size:26
Alignment explanation
Indices: 3664713--3664765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3664703 CCGATCCGAT
3664713 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* *
3664739 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
3664765 C
1 C
3664766 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:3665027 original size:45 final size:45
Alignment explanation
Indices: 3664867--3665024 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 45
3664857 GTACGGGCAC
* * * **
3664867 TTGCCTCGACCGCCATCGACACAAGTTGGACCCTAGTGCGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGACCCTGGTATGGGCGG
* * * *
3664912 TTGCCTCGACCACCATCGATACAAGATGGCCCCCGGTATGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGACCCTGGTATGGGCGG
* * * * * *
3664957 TTGCATCGAACACCATCGACACATGCTGGGCCATGGTATGGGTGG
1 TTGCCTCGACCACCATCGACACAAGCTGGACCCTGGTATGGGCGG
3665002 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
3665025 TGCCGAGCCT
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCTGGACCCTGGTATGGGCGG
Found at i:3665511 original size:26 final size:26
Alignment explanation
Indices: 3665482--3665531 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3665472 GTCCGATCTA
3665482 AGACTGAGAATGAACTCCGTATGCTT
1 AGACTGAGAATGAACTCCGTATGCTT
* *
3665508 AGACTGGGAATGAACTCTGTATGC
1 AGACTGAGAATGAACTCCGTATGC
3665532 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCGTATGCTT
Found at i:3665725 original size:26 final size:25
Alignment explanation
Indices: 3665675--3665726 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
3665665 CCGATCTGAT
**
3665675 CTTAGACTGGGAATGAACTTGTATG
1 CTTAGACTGGGAATGAACTCATATG
3665700 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACT-CATATG
3665726 C
1 C
3665727 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCATATG
Found at i:3666096 original size:26 final size:26
Alignment explanation
Indices: 3666060--3666112 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3666050 TCCATTTGAT
*
3666060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
3666086 CTTAGATTGGGGATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
3666112 C
1 C
3666113 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:3667499 original size:45 final size:45
Alignment explanation
Indices: 3667293--3667509 Score: 184
Period size: 45 Copynumber: 4.8 Consensus size: 45
3667283 GGCTACCTTT
** * *
3667293 TGGTACGGGC-ACTTGCCTCGACTGCCATCGGCACAAGCTGGGCCC
1 TGGTACGGGCGA-TTGCCTCGACCACCATCGGCACATGCTGGCCCC
** * * * *
3667338 TGGTGTGGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCCT
1 TGGTACGGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCC
* * ** * * * *
3667383 TGGTACGGGTGATTGCTTCTTCCACCATCGACACAAGATCGCCCC
1 TGGTACGGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCC
* * * *
3667428 TGGTACGGGCGATTGCATCGAACACCATCGGCACATGCTGGGCCG
1 TGGTACGGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCC
* * * *
3667473 TGGTGCGAGCGGTTGCCTTGACCACCATCGGCACATG
1 TGGTACGGGCGATTGCCTCGACCACCATCGGCACATG
3667510 TCGAGCCCCG
Statistics
Matches: 130, Mismatches: 41, Indels: 2
0.75 0.24 0.01
Matches are distributed among these distances:
45 130 1.00
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (45 bp):
TGGTACGGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCC
Found at i:3668308 original size:26 final size:26
Alignment explanation
Indices: 3668279--3668331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3668269 CCGGTCCGAT
3668279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3668305 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3668331 C
1 C
3668332 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3669411 original size:89 final size:85
Alignment explanation
Indices: 3669257--3669415 Score: 196
Period size: 89 Copynumber: 1.8 Consensus size: 85
3669247 CCTGGCCTTG
* * * *
3669257 GTGCGAACGGTTGCCTCGACACCATCGCACATGCTGGCCTGCGTGCGAGCGATTCCTCAACCCAC
1 GTGCGAACAGTTGCATCGACACCATCACACATGCTGGCCTGCGTACGAGCGATTCCTCAACCCAC
3669322 CATCGAATAAGATGGCCGCT
66 CATCGAATAAGATGGCCGCT
*
3669342 GTGCGTAACAGTTGCATCGAACACCATCCACACATGCTGGGCCGTG-GTACGGGCGATTACCTC-
1 GTGCG-AACAGTTGCATCG-ACACCAT-CACACATGCT-GGCC-TGCGTACGAGCGATT-CCTCA
*
3669405 AGCCACCATCG
60 ACCCACCATCG
3669416 GCACTTGCCG
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
85 5 0.08
86 11 0.18
87 7 0.11
88 9 0.15
89 24 0.39
90 6 0.10
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (85 bp):
GTGCGAACAGTTGCATCGACACCATCACACATGCTGGCCTGCGTACGAGCGATTCCTCAACCCAC
CATCGAATAAGATGGCCGCT
Found at i:3670134 original size:12 final size:12
Alignment explanation
Indices: 3670117--3670159 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
3670107 TCCCCCTACG
*
3670117 TGCTGCCGATCC
1 TGCTGCCGGTCC
*
3670129 TGCTGCTGGTCC
1 TGCTGCCGGTCC
3670141 TGCTGCCGGTCC
1 TGCTGCCGGTCC
*
3670153 TACTGCC
1 TGCTGCC
3670160 ACAACCCTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.05, C:0.40, G:0.28, T:0.28
Consensus pattern (12 bp):
TGCTGCCGGTCC
Found at i:3672265 original size:23 final size:23
Alignment explanation
Indices: 3672232--3672287 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
3672222 TCAACCATCA
* *
3672232 ATGGCACATGATGGCGCATGGTG
1 ATGGCATATGATGGCACATGGTG
3672255 ATGGCATATGATGGCACATGGTG
1 ATGGCATATGATGGCACATGGTG
*
3672278 ATAGCATATG
1 ATGGCATATG
3672288 CATCGACCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (23 bp):
ATGGCATATGATGGCACATGGTG
Found at i:3675113 original size:45 final size:45
Alignment explanation
Indices: 3675064--3675223 Score: 185
Period size: 45 Copynumber: 3.6 Consensus size: 45
3675054 GTACGAGTGG
* * * *
3675064 TTGCCTCGATCACCACCTGCACATGCTGGCCCTTGGTGCGGGCGA
1 TTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCGGGCGA
* * * * * *
3675109 TTGCCTCGAACACCATTGGCACAAGATGGCCCCTGGTGCCGACGG
1 TTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCGGGCGA
* * * *
3675154 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGAGCGA
1 TTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCGGGCGA
*
3675199 TTGCCTCGACCACCATCGGCACATG
1 TTGCCTCGAACACCATCGGCACATG
3675224 TCGAACCCCG
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.19
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCGGGCGA
Found at i:3675694 original size:26 final size:26
Alignment explanation
Indices: 3675664--3675716 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3675654 CCAGTCTGAT
3675664 CTTAGACT-GCAAATGAACTCCGTATG
1 CTTAGACTAG-AAATGAACTCCGTATG
* *
3675690 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
3675716 C
1 C
3675717 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:3675939 original size:159 final size:158
Alignment explanation
Indices: 3675689--3675983 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 158
3675679 AACTCCGTAT
* * *
3675689 GCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
3675754 TAGGCCGGAAAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
66 CAGACCGGAAAGGCAGAATGCACAAGCTGAGGATCGGCCCGATCCCCC-CTACGTGCTATCGATC
3675819 CCGCTGCCACAACCCTTGGTCCGACTGGG
130 CCGCTGCCACAACCCTTGGTCCGACTGGG
* * *
3675848 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
3675912 GCCGATC-GAAGAGGCAGATTGCACAAGCTGGGGATTGGCCCGGTCCCCCCTACGTGCTATCGAT
65 GCAGACCGGAA-AGGCAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTACGTGCTATCGAT
*
3675976 CCTGCTGC
129 CCCGCTGC
3675984 TGGTCCTGCT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
158 23 0.20
159 91 0.80
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGACCGGAAAGGCAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCCTTGGTCCGACTGGG
Found at i:3676047 original size:25 final size:26
Alignment explanation
Indices: 3676019--3676070 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3676009 CTGGTTTGAT
*
3676019 CTTAGA-TGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
3676044 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
3676070 C
1 C
3676071 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:3676187 original size:196 final size:196
Alignment explanation
Indices: 3675861--3676226 Score: 531
Period size: 196 Copynumber: 1.9 Consensus size: 196
3675851 TAGACATGGA
* * *
3675861 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCGATCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGG
* * * *
3675926 CAGATTGCACAAGCTGGGGATTGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCT
66 CAGATTGCACAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCCGCTGCAGGTCCT
3675991 GCTGCCACAACCCTCGGTCTGGTTTGATCTTAGA-TGGGAATGAACTCTGTATGCTTAGATTGGG
131 GCTGCCACAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGG
3676055 G
196 G
* * *
3676056 ATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCCGCTCAGCCGGCC-AGGGA
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGG-CGCTCAGCCGACCGA-AGA
* * ** *
3676120 GGCAGGA-TGCGCAAGCTGGGGATCGACCCGGTCCCCTCTGTGTGCTGTCGATCCCGCTGCAGGT
64 GGCA-GATTGCACAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCCGCTGCAGGT
* *
3676184 CCTGCTGCTACAACCCTTGGTCTGGTTTGATCTTAGACTGGGA
128 CCTGCTGCCACAACCCTCGGTCTGGTTTGATCTTAGACTGGGA
3676227 GCCCACTACA
Statistics
Matches: 150, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
195 44 0.29
196 99 0.66
197 7 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (196 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGG
CAGATTGCACAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCCGCTGCAGGTCCT
GCTGCCACAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGG
G
Found at i:3677095 original size:45 final size:45
Alignment explanation
Indices: 3677013--3677175 Score: 164
Period size: 45 Copynumber: 3.6 Consensus size: 45
3677003 GTACGAGCAC
* * * * * * *
3677013 TTGCCTCGACCGCCATCAGCACAAGCTAGGCCCTGGTGCGGGCAG
1 TTGCATCGACCACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
* * * * *
3677058 TTGCTTTGACCACCATCGGCACATGCTGGGTCGTGGTGCGAGCGG
1 TTGCATCGACCACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
* ** * *
3677103 TTGCATCGAACACTGTCGGCACTTGCTGGGCCATGGTGTGGGCGG
1 TTGCATCGACCACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
*
3677148 TTGCCTCGACCACCATCGGCACATGCTG
1 TTGCATCGACCACCATCGGCACATGCTG
3677176 AGCCTCGGTC
Statistics
Matches: 93, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (45 bp):
TTGCATCGACCACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
Found at i:3677100 original size:90 final size:90
Alignment explanation
Indices: 3677001--3677175 Score: 197
Period size: 90 Copynumber: 1.9 Consensus size: 90
3676991 GGCTACCCTT
* * * * * *
3677001 TGGTACGAGCACTTGCCTCGACCGCCATCAGCACAAGCTAGGCCCTGGTGCGGGCAGTTGCTTTG
1 TGGTACGAGCACTTGCATCGAACACCATCAGCACAAGCTAGGCCATGGTGCGGGCAGTTGCCTCG
3677066 ACCACCATCGGCACATGCTGGGTCG
66 ACCACCATCGGCACATGCTGGGTCG
* ** ** * ** * * *
3677091 TGGTGCGAGCGGTTGCATCGAACACTGTCGGCACTTGCTGGGCCATGGTGTGGGCGGTTGCCTCG
1 TGGTACGAGCACTTGCATCGAACACCATCAGCACAAGCTAGGCCATGGTGCGGGCAGTTGCCTCG
3677156 ACCACCATCGGCACATGCTG
66 ACCACCATCGGCACATGCTG
3677176 AGCCTCGGTC
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 68 1.00
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (90 bp):
TGGTACGAGCACTTGCATCGAACACCATCAGCACAAGCTAGGCCATGGTGCGGGCAGTTGCCTCG
ACCACCATCGGCACATGCTGGGTCG
Found at i:3678085 original size:170 final size:170
Alignment explanation
Indices: 3677796--3678166 Score: 417
Period size: 170 Copynumber: 2.2 Consensus size: 170
3677786 CCAGCTGGGG
** *
3677796 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
3677860 CCTACCGAAGAGGTAGAATGCGTAAGTCGAGGATCAGCTCGATCCCCTTTGCGTGCTGTCGATCC
65 CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCC
** * * **
3677925 TGCTGCTGGTCCTAT-TGCCGTAACCCTCGGTCCGATCTGAT
130 CACTGCGGGTCCT-TCTACCACAACCCTCGGTCCGATCTGAT
* * *
3677966 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC-GGACGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGG-CGCTCAG
* * * *
3678030 CCGGCCAAAGAGGCAGTATGTGCAAGCCGGGGATC-GACCCGATCCCCTCTGCGTGCTGTCGATC
65 CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCTCTGCGTGCTGTCGATC
* * *
3678094 CCACTGCGGGTCCTTCTATCACAACCCTCGGTTCGGTCTGAT
129 CCACTGCGGGTCCTTCTACCACAACCCTCGGTCCGATCTGAT
* * *
3678136 CTTAGACTGGGAGTGCACTACGTATGCCTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA
3678167 ATTCACCTAC
Statistics
Matches: 167, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
169 5 0.03
170 162 0.97
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGC
CGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCC
ACTGCGGGTCCTTCTACCACAACCCTCGGTCCGATCTGAT
Found at i:3678214 original size:170 final size:170
Alignment explanation
Indices: 3677899--3678228 Score: 364
Period size: 170 Copynumber: 1.9 Consensus size: 170
3677889 AGGATCAGCT
* ** * * **
3677899 CGATCCCCTTTGCGTGCTGTCGATCCTGCTGCTGGTCCTATTGCCGTAACCCTCGGTCCGATCTG
1 CGATCCCCTCTGCGTGCTGTCGATCCCACTGCGGGTCCTATTACCACAACCCTCGGTCCGATCTG
* * * * *
3677964 ATCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGACGCTCA
66 ATCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACAAAATCAGCGTACGGACACTCA
* *
3678029 GCCGGCCAAAGAGGCAGTATGTGCAAGCCGGGGATCGACC
131 GCCGGCCAAAGAGGCAGGATGGGCAAGCCGGGGATCGACC
* * *
3678069 CGATCCCCTCTGCGTGCTGTCGATCCCACTGCGGGTCCT-TCTATCACAACCCTCGGTTCGGTCT
1 CGATCCCCTCTGCGTGCTGTCGATCCCACTGCGGGTCCTAT-TACCACAACCCTCGGTCCGATCT
* * * * *
3678133 GATCTTAGACTGGGAGTGCACTACGTATGCCTAAATTC-ACCTAC-AAA-CAGCGTACGAGGCAC
65 GATCTTAGACTGGGAATGAACTACGTATGCCT-AAGTCAACCCACAAAATCAGCGTACG-GACAC
* *
3678195 TTAGCCGCGTCC-GAGAGGCAGGATGGGCAAGCCG
128 TCAGCCG-G-CCAAAGAGGCAGGATGGGCAAGCCG
3678229 ATGGTTCGAT
Statistics
Matches: 131, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
168 7 0.05
169 13 0.10
170 105 0.80
171 6 0.05
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (170 bp):
CGATCCCCTCTGCGTGCTGTCGATCCCACTGCGGGTCCTATTACCACAACCCTCGGTCCGATCTG
ATCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACAAAATCAGCGTACGGACACTCA
GCCGGCCAAAGAGGCAGGATGGGCAAGCCGGGGATCGACC
Found at i:3678981 original size:45 final size:45
Alignment explanation
Indices: 3678899--3679095 Score: 213
Period size: 45 Copynumber: 4.4 Consensus size: 45
3678889 GGCACACGCA
* * **
3678899 TCGACCATCATCGGCACAAGCT-GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC-TTGGTGCGGGCGGTTGCC
*
3678944 TCGACTACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCT-GGCCCTTGGTGCGGGCGGTTGCC
* ** * *
3678989 TCGACCACCATCAGCACAAGAAGGCCCTTGGTGCGAGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
* * * *
3679034 TCGAACACCATCGGCACATGCTGGCCGC--AGTGCGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGCC-CTTGGTGCGGGCGGTTGCC
3679078 TCGACCACCATCGGCACA
1 TCGACCACCATCGGCACA
3679096 TTTCGAGCCC
Statistics
Matches: 127, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
44 34 0.27
45 88 0.69
46 1 0.01
47 4 0.03
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
Found at i:3679569 original size:26 final size:26
Alignment explanation
Indices: 3679539--3679589 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3679529 CGGTCCATCC
3679539 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
3679565 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
3679590 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:3679927 original size:26 final size:26
Alignment explanation
Indices: 3679891--3679943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3679881 TCGGTCTAAT
3679891 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3679917 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3679943 C
1 C
3679944 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3680064 original size:196 final size:195
Alignment explanation
Indices: 3679736--3680101 Score: 446
Period size: 196 Copynumber: 1.9 Consensus size: 195
3679726 GACATGGAAA
* * * * * * *
3679736 GAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGGGCTCAATCGATCGGAAGGCAG
1 GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAATCGACCAGAAGACAG
* * * * ***
3679801 AATGCGTAAATTGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTGTTGCTGGCCCTGCT
66 AATGCGTAAATCGGGGATCGACCCGATCCCCCCTACATACTGTCGATCCCGCTGCACACCCTGCT
* *
3679866 GCCTCAACCCTCGAT-TCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
131 GCCACAACCCTCGATCT-GGTCTAATCTTAGACTGGCAATGAACTCCATATGCTTAGACTGGGGA
3679930 T
195 T
* * * *
3679931 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGAGACA
1 GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAATCGACCAGA-AGACA
* * * ** * *
3679996 GGATGCGTAAGTCGGGGATCGACCCGGTCCCTTCTTCATACTGTCGATCCCGCTGCACATCCTGC
65 GAATGCGTAAATCGGGGATCGACCCGATCCCCCCTACATACTGTCGATCCCGCTGCACACCCTGC
* *
3680061 TGCCACAACCCTCGATCTGGTCTGATCTTAGATTGGCAATG
130 TGCCACAACCCTCGATCTGGTCTAATCTTAGACTGGCAATG
3680102 CACTATGTAT
Statistics
Matches: 140, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
195 49 0.35
196 90 0.64
197 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (195 bp):
GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAATCGACCAGAAGACAG
AATGCGTAAATCGGGGATCGACCCGATCCCCCCTACATACTGTCGATCCCGCTGCACACCCTGCT
GCCACAACCCTCGATCTGGTCTAATCTTAGACTGGCAATGAACTCCATATGCTTAGACTGGGGAT
Found at i:3680878 original size:45 final size:45
Alignment explanation
Indices: 3680827--3681029 Score: 160
Period size: 45 Copynumber: 4.5 Consensus size: 45
3680817 GTATGGGTAC
* * * * *
3680827 TTGCCTCAACCGCCATCAGCACAAGCTGGGCCTTGGTGCGGGCGG
1 TTGCCTCAACCACCATCGGCACAAGCTGGCCCTTGATGCGGGCGA
* * * *
3680872 TTGCCTCCATCACCATCGGCACATA-CCGGCCCTTGGTGCGGGCGA
1 TTGCCTCAACCACCATCGGCACA-AGCTGGCCCTTGATGCGGGCGA
* * * * *
3680917 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTT-ATACGGGTGG
1 TTGCCTCAACCACCATCGGCACAAGCTGG-CCCTTGATGCGGGCGA
* * * * * * *
3680962 TTACATCGAA-CACCATCGGCATATGCTGGGCCATGATGCGGGCAA
1 TTGCCTC-AACCACCATCGGCACAAGCTGGCCCTTGATGCGGGCGA
*
3681007 TTGCCTCAACCACCATCAGCACA
1 TTGCCTCAACCACCATCGGCACA
3681030 TGTCGAGCCC
Statistics
Matches: 121, Mismatches: 31, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
44 6 0.05
45 108 0.89
46 7 0.06
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACAAGCTGGCCCTTGATGCGGGCGA
Found at i:3681693 original size:26 final size:26
Alignment explanation
Indices: 3681664--3681716 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3681654 CCAATTTGAT
3681664 CTTAAACC-GAGAATGAACTCCGTATG
1 CTTAAACCGGAG-ATGAACTCCGTATG
* *
3681690 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAAACCGGAGATGAACTCCGTATG
3681716 C
1 C
3681717 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACCGGAGATGAACTCCGTATG
Found at i:3682707 original size:45 final size:46
Alignment explanation
Indices: 3682658--3682860 Score: 200
Period size: 45 Copynumber: 4.5 Consensus size: 46
3682648 GTACAGGCAC
*
3682658 TTGCCTCGACCGCCATCGGCACAAGCTGGGCTC-TGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCTCATGGTGCGGGCGG
* ** * * * * * *
3682703 TTGCCTCGATCACCATCGGCACTTGC-CGACCCTTGGTACGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCTCATGGTGCGGGCGG
* *
3682748 TTGCCTCGACCACCATCGGTACAAGAT-GGCTTC-TGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGC-TCATGGTGCGGGCGG
* * * * *
3682793 TTGCATCGAACACCATCAGCACATGCTGGGC-CATGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCTCATGGTGCGGGCGG
*
3682838 TTGCCACGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3682861 TGTCGAGCCC
Statistics
Matches: 124, Mismatches: 29, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
44 4 0.03
45 116 0.94
46 4 0.03
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (46 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCTCATGGTGCGGGCGG
Found at i:3682739 original size:90 final size:89
Alignment explanation
Indices: 3682645--3682860 Score: 263
Period size: 90 Copynumber: 2.4 Consensus size: 89
3682635 AGGCTACCGT
* * * *
3682645 TTGGTACAGGCACTTGCCTCGACCGCCATCGGCACAAGCTGGGC-TCTGGTGCGGGCGGTTGCCT
1 TTGGTACGGGCA-TTGCCTCGACCACCATCGGCACAAGAT-GGCTTCTGGTGCGGGCGGTTGCAT
* * *
3682709 CGATCACCATCGGCACTTGCCGACCC
64 CGAACACCATCAGCACATGCCGACCC
*
3682735 TTGGTACGGGCGATTGCCTCGACCACCATCGGTACAAGATGGCTTCTGGTGCGGGCGGTTGCATC
1 TTGGTACGGGC-ATTGCCTCGACCACCATCGGCACAAGATGGCTTCTGGTGCGGGCGGTTGCATC
* **
3682800 GAACACCATCAGCACATGCTGGGCC
65 GAACACCATCAGCACATGCCGACCC
* * *
3682825 ATGGTGCGGGCAGTTGCCACGACCACCATCGGCACA
1 TTGGTACGGGCA-TTGCCTCGACCACCATCGGCACA
3682861 TGTCGAGCCC
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
89 4 0.04
90 103 0.95
91 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (89 bp):
TTGGTACGGGCATTGCCTCGACCACCATCGGCACAAGATGGCTTCTGGTGCGGGCGGTTGCATCG
AACACCATCAGCACATGCCGACCC
Found at i:3683412 original size:136 final size:136
Alignment explanation
Indices: 3683166--3683559 Score: 540
Period size: 136 Copynumber: 2.9 Consensus size: 136
3683156 CCAATTGGGG
* * * * *
3683166 CTTAGACCGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * *
3683231 CGACCGAAGAGGCAAGATGCGCAAGCTGAGGATCAGCCTGGTCCCCCTCTACGTGCTGCTACCGG
66 CGACCGAAGAGGCAAGATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGCTACCGA
3683296 TCCAAT
131 TCCAAT
3683302 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * * *
3683367 CAACCGGAGAGACAAGATGCACAAGCCAAGGATCGG-CTCGATCCCCCTCTGCGTGCTGCTGCCG
66 CGACCGAAGAGGCAAGATGCGCAAGCCGAGGATCGGCCT-GATCCCCCTCTGCGTGCTGCTACCG
*
3683431 ATCCGAT
130 ATCCAAT
* * * * *
3683438 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
**
3683503 CGGTCGAAGAGGCATA-ATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCT
66 CGACCGAAGAGGCA-AGATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCT
3683560 ACCGATCCTG
Statistics
Matches: 226, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
135 2 0.01
136 221 0.98
137 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (136 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
CGACCGAAGAGGCAAGATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGCTACCGA
TCCAAT
Found at i:3684842 original size:45 final size:44
Alignment explanation
Indices: 3684779--3684962 Score: 197
Period size: 45 Copynumber: 4.1 Consensus size: 44
3684769 TCGGCGTCGA
* * * *
3684779 CACAAGCTGGGCCCTGGTGTGGGTAGTTGCCTCGATCACCATTGG
1 CACAAGCT-GGCCCTGGTGCGGGTGGTTGCCTCGACCACCATCGG
* * * *
3684824 CACATGCCGGCCCTTGGTGCGGGCGATTGCCTCGACCACCATCGG
1 CACAAGCTGGCCC-TGGTGCGGGTGGTTGCCTCGACCACCATCGG
* * * * *
3684869 CTCAAGATGGCCCCTGGTGCAGGTGGTTGCATCGAACACCATCGG
1 CACAAGCTGG-CCCTGGTGCGGGTGGTTGCCTCGACCACCATCGG
* *
3684914 CACAAGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGG
1 CACAAGCT-GGCCCTGGTGCGGGTGGTTGCCTCGACCACCATCGG
3684959 CACA
1 CACA
3684963 TGTCGAGCCT
Statistics
Matches: 112, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
44 5 0.04
45 102 0.91
46 5 0.04
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (44 bp):
CACAAGCTGGCCCTGGTGCGGGTGGTTGCCTCGACCACCATCGG
Found at i:3684884 original size:90 final size:90
Alignment explanation
Indices: 3684781--3684959 Score: 241
Period size: 90 Copynumber: 2.0 Consensus size: 90
3684771 GGCGTCGACA
* * ** * * * * *
3684781 CAAGCTGGGCCCTGGTGTGGGTAGTTGCCTCGATCACCATTGGCACATGCCGGCCCTTGGTGCGG
1 CAAGATGGCCCCTGGTGCAGGTAGTTGCATCGAACACCATCGGCACAAGCCGGCCCATGGTGCGG
3684846 GCGATTGCCTCGACCACCATCGGCT
66 GCGATTGCCTCGACCACCATCGGCT
* * *
3684871 CAAGATGGCCCCTGGTGCAGGTGGTTGCATCGAACACCATCGGCACAAGCTGGGCCATGGTGCGG
1 CAAGATGGCCCCTGGTGCAGGTAGTTGCATCGAACACCATCGGCACAAGCCGGCCCATGGTGCGG
*
3684936 GCGGTTGCCTCGACCACCATCGGC
66 GCGATTGCCTCGACCACCATCGGC
3684960 ACATGTCGAG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 76 1.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.20
Consensus pattern (90 bp):
CAAGATGGCCCCTGGTGCAGGTAGTTGCATCGAACACCATCGGCACAAGCCGGCCCATGGTGCGG
GCGATTGCCTCGACCACCATCGGCT
Found at i:3685751 original size:26 final size:26
Alignment explanation
Indices: 3685722--3685774 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3685712 CCAGTCTGAT
**
3685722 CTTAGACT-GGGAATGGGCTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
3685748 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
3685774 C
1 C
3685775 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:3685929 original size:196 final size:195
Alignment explanation
Indices: 3685575--3685929 Score: 453
Period size: 196 Copynumber: 1.8 Consensus size: 195
3685565 ATTAAACTCG
* *
3685575 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAGCTGACCAGAGAGGTAGAATGTGCA
1 TATGCCTAAGCCAACCCACGAAACGAACGTGCGGGGCTCAGCTGACCAGAGAGGAAGAATGTGCA
* * * * *
3685640 AGCCATGGATCGACCCGGTCCCCCCTGCATACTGTCGATCCTGCTGCTGGTCCTGCTATCGCAAC
66 AGCCAGGGATCGACCCGGTCCCCCCTACATACTGTCAATCCCGCTGCAGGTCCTGCTATCGCAAC
* * *
3685705 CCTCGATCCAGTCTGATCTTAGACTGGGAATGGGCTCCATATGCTTAGACTAGGGATGAACTCCA
131 CCTCGATCCAGTCCGATCATAAACTGGGAATGGGCTCCATATGCTTAGACTAGGGATGAACTCCA
* * * *
3685770 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTTGGCTAGAGAGGCAAG-ATGTG
1 TATGCCTAAGCCAACCCACGAAACGAACGTGCGGG-GCTCAGCTGACCAGAGAGG-AAGAATGTG
* * * * * * * * *
3685834 CAAGTCGGGGATCGACCTGGTCCCCTCTACATGCTGTCAATCCCGTTGCAGGTCTTGCTGTGGCA
64 CAAGCCAGGGATCGACCCGGTCCCCCCTACATACTGTCAATCCCGCTGCAGGTCCTGCTATCGCA
*
3685899 ACCCTCTG-TCCGGTCCGATCATAAACTGGGA
129 ACCCTC-GATCCAGTCCGATCATAAACTGGGA
3685930 GTGCACTATG
Statistics
Matches: 133, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
195 33 0.25
196 97 0.73
197 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (195 bp):
TATGCCTAAGCCAACCCACGAAACGAACGTGCGGGGCTCAGCTGACCAGAGAGGAAGAATGTGCA
AGCCAGGGATCGACCCGGTCCCCCCTACATACTGTCAATCCCGCTGCAGGTCCTGCTATCGCAAC
CCTCGATCCAGTCCGATCATAAACTGGGAATGGGCTCCATATGCTTAGACTAGGGATGAACTCCA
Found at i:3687726 original size:196 final size:196
Alignment explanation
Indices: 3687392--3687757 Score: 456
Period size: 196 Copynumber: 1.9 Consensus size: 196
3687382 TTGACATGGA
* * * *
3687392 ATGAACTCAGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAACCGGCCGGAGAGG
1 ATGAACTCAGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAACCGGCCAGAGAGG
* * * * * *
3687457 CAGAATGCGCAAGTCGGGGATCAGCCCGGTCCACCTCGCATGTTGTCGATCCTACTGCTGGTCTT
66 CAGAATGCGCAAGTCGGGGATCAACCCGGTCCACCTCGCATGCTGCCGATCCCACTGCGGGTCCT
*
3687522 ACTACCGCAACCCTC-GATCTGG-TCTGATCTTAAACTGGGAATAAACCCCATACACTTAGACTG
131 ACTACCGCAACCCTCAG-TCCGGTTC-GATCTTAAACTGGGAATAAACCCCATACACTTAGACTG
3687585 GGG
194 GGG
* * *
3687588 ATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTCAACCGGCCAGAGAGG
1 ATGAACTCAGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAACCGGCCAGAGAGG
* * *
3687653 CA-AGATGTGTAAG-CTGGGGATCAACTCGGTCC-CCTCTG-AGTGCTGCCGATCCCACTGCGGG
66 CAGA-ATGCGCAAGTC-GGGGATCAACCCGGTCCACCTC-GCA-TGCTGCCGATCCCACTGCGGG
** *
3687714 TCCTGTTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGA
127 TCCTACTACCGCAACCCTCAGTCCGGTTCGATCTTAAACTGGGA
3687758 GTGCACTACG
Statistics
Matches: 144, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
195 7 0.05
196 134 0.93
197 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (196 bp):
ATGAACTCAGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAACCGGCCAGAGAGG
CAGAATGCGCAAGTCGGGGATCAACCCGGTCCACCTCGCATGCTGCCGATCCCACTGCGGGTCCT
ACTACCGCAACCCTCAGTCCGGTTCGATCTTAAACTGGGAATAAACCCCATACACTTAGACTGGG
G
Found at i:3694506 original size:45 final size:45
Alignment explanation
Indices: 3694457--3694600 Score: 164
Period size: 45 Copynumber: 3.2 Consensus size: 45
3694447 GTACGGGCAC
3694457 TTGCCTCGACCACCATCGGTACAAACTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGTACAAACTGGGCCCTGGTGTGGGCGG
* ** * * * * *
3694502 TTGCCTCGATCACCATCGGTACATGCCGGGCCTTGGTGCGGGTGA
1 TTGCCTCGACCACCATCGGTACAAACTGGGCCCTGGTGTGGGCGG
* * *
3694547 TTGCCTCGACCACCATCGGCACAAGA-TGGCCCCTGGTGTGGGCAG
1 TTGCCTCGACCACCATCGGTACAA-ACTGGGCCCTGGTGTGGGCGG
*
3694592 TTGCATCGA
1 TTGCCTCGA
3694601 ACACGATTGG
Statistics
Matches: 78, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGTACAAACTGGGCCCTGGTGTGGGCGG
Found at i:3694623 original size:90 final size:90
Alignment explanation
Indices: 3694457--3694654 Score: 227
Period size: 90 Copynumber: 2.2 Consensus size: 90
3694447 GTACGGGCAC
* * * * * *
3694457 TTGCCTCGACCACCATCGGTACAAACTGGGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGGT
1 TTGCCTCGACCACCATCGGCACAAACTGGCCCCTGGTGTGGGCAGTTGCATCGAACACCATCGGC
* * ***
3694522 ACATGCCGGGCCTTGGTGCGGGTGA
66 ACATACCGGGCCGTGGTGCGACCGA
* *
3694547 TTGCCTCGACCACCATCGGCACAAGA-TGGCCCCTGGTGTGGGCAGTTGCATCGAACACGATTGG
1 TTGCCTCGACCACCATCGGCACAA-ACTGGCCCCTGGTGTGGGCAGTTGCATCGAACACCATCGG
* *
3694611 CATATACTGGGCCGTGGTGCGACCGA
65 CACATACCGGGCCGTGGTGCGACCGA
* *
3694637 TTGCCTTGACCACAATCG
1 TTGCCTCGACCACCATCG
3694655 ACAAATGTCG
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
90 89 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAACTGGCCCCTGGTGTGGGCAGTTGCATCGAACACCATCGGC
ACATACCGGGCCGTGGTGCGACCGA
Found at i:3695140 original size:26 final size:26
Alignment explanation
Indices: 3695102--3695154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3695092 TCGGTTCAAT
3695102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3695128 CTTAGACTTGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3695154 C
1 C
3695155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3698613 original size:26 final size:26
Alignment explanation
Indices: 3698575--3698627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3698565 CCGGTCTGAT
* *
3698575 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3698601 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3698627 C
1 C
3698628 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3699874 original size:13 final size:13
Alignment explanation
Indices: 3699856--3699880 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3699846 TAATGGCACA
3699856 TGATGGCACATGG
1 TGATGGCACATGG
3699869 TGATGGCACATG
1 TGATGGCACATG
3699881 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3699965 original size:45 final size:45
Alignment explanation
Indices: 3699916--3700074 Score: 153
Period size: 45 Copynumber: 3.5 Consensus size: 45
3699906 CCCTTTCGTA
* *
3699916 CGGGCACTTGCCTCGACCGCCATCGGATCAAGCTGGGCCGTGGTG
1 CGGGCAGTTGCCTCGACCACCATCGGATCAAGCTGGGCCGTGGTG
* * * * *
3699961 CGGGCGGTTGCCTCGACCACCATCAGCA-CAAGATGGCCCCTGGTG
1 CGGGCAGTTGCCTCGACCACCATC-GGATCAAGCTGGGCCGTGGTG
* * * *
3700006 TGGGCAATTGCAC-CGAACACCATCGGCAT-ATGCTGGGCCGTGGTG
1 CGGGCAGTTGC-CTCGACCACCATCGG-ATCAAGCTGGGCCGTGGTG
* *
3700051 TGGGCGGTTGCCTCGACCACCATC
1 CGGGCAGTTGCCTCGACCACCATC
3700075 AGCACATGTC
Statistics
Matches: 90, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
44 2 0.02
45 85 0.94
46 3 0.03
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (45 bp):
CGGGCAGTTGCCTCGACCACCATCGGATCAAGCTGGGCCGTGGTG
Found at i:3700560 original size:26 final size:26
Alignment explanation
Indices: 3700522--3700574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3700512 TCGGTTTGAT
* *
3700522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTCGGAATGAACTCCGTATG
3700548 CTTAAACTCGGAATGAACTCCGTATG
1 CTTAAACTCGGAATGAACTCCGTATG
3700574 C
1 C
3700575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTCGGAATGAACTCCGTATG
Found at i:3700943 original size:26 final size:26
Alignment explanation
Indices: 3700888--3700947 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
3700878 TTACACTGGA
* * * *
3700888 ATGAACTTTGTATGCTTAGATTGAGT
1 ATGAACTCTGTACGCTTAGATAGAGG
3700914 ATGAACTCTGTACGCTTAGACTAG-GG
1 ATGAACTCTGTACGCTTAGA-TAGAGG
3700940 ATGAACTC
1 ATGAACTC
3700948 CGTATGCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
ATGAACTCTGTACGCTTAGATAGAGG
Found at i:3701519 original size:33 final size:33
Alignment explanation
Indices: 3701482--3701550 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
3701472 GAGACACTTT
3701482 AATGGCTACTGGGAGCAAACCTATAAAATCTCA
1 AATGGCTACTGGGAGCAAACCTATAAAATCTCA
*
3701515 AATGGCTATTGGGAGCAAACCTATAAAATCTCA
1 AATGGCTACTGGGAGCAAACCTATAAAATCTCA
3701548 AAT
1 AAT
3701551 TTTTGTGACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (33 bp):
AATGGCTACTGGGAGCAAACCTATAAAATCTCA
Found at i:3707206 original size:45 final size:45
Alignment explanation
Indices: 3707125--3707329 Score: 161
Period size: 45 Copynumber: 4.6 Consensus size: 45
3707115 TACGGGCACC
* * * * *
3707125 TGCCTCGATCACCATCGACACAAGCTGGGCCC-TGGTGTGAGTGGT
1 TGCCTCGACCACCATCGGCACATGCT-GACCCTTGGTGCGAGTGGT
* * * *
3707170 TGCCTCGATCACCATCGGCACATG-TCGACCCTTGGTGCAAGCGAT
1 TGCCTCGACCACCATCGGCACATGCT-GACCCTTGGTGCGAGTGGT
* * * * *
3707215 TGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGC-AG-GCGAT
1 TGCCTCGACCACCATCGGCACATGCTGACCCTTGGTGCGAGTG-G-T
* * *
3707260 TGCATCGAACACCATCGGTACATGCTAGA--CTGTGGTGCGAGTGGT
1 TGCCTCGACCACCATCGGCACATGCT-GACCCT-TGGTGCGAGTGGT
3707305 TGCCTCGACCACCATCGGCACATGC
1 TGCCTCGACCACCATCGGCACATGC
3707330 CGAGCCTCGA
Statistics
Matches: 127, Mismatches: 25, Indels: 16
0.76 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 8 0.06
45 112 0.88
46 5 0.04
47 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.20
Consensus pattern (45 bp):
TGCCTCGACCACCATCGGCACATGCTGACCCTTGGTGCGAGTGGT
Found at i:3707273 original size:90 final size:90
Alignment explanation
Indices: 3707125--3707326 Score: 223
Period size: 90 Copynumber: 2.2 Consensus size: 90
3707115 TACGGGCACC
* * * * * * *
3707125 TGCCTCGATCACCATCGACACAAGCTGGGCCCTGGTGTGAGTGGTTGCCTCGATCACCATCGGCA
1 TGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTCAGTGGTTGCATCGAACACCATCGGCA
*
3707190 CATG-TCGACCCT-TGGTGCAAGCGAT
66 CATGCTAGA--CTGTGGTGCAAGCGAT
*
3707215 TGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTG-CAG-GCGATTGCATCGAACACCATCGG
1 TGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTCAGTG-G-TTGCATCGAACACCATCGG
* * * *
3707278 TACATGCTAGACTGTGGTGCGAGTGGT
64 CACATGCTAGACTGTGGTGCAAGCGAT
3707305 TGCCTCGACCACCATCGGCACA
1 TGCCTCGACCACCATCGGCACA
3707327 TGCCGAGCCT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
88 1 0.01
89 5 0.05
90 85 0.90
91 3 0.03
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (90 bp):
TGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTCAGTGGTTGCATCGAACACCATCGGCA
CATGCTAGACTGTGGTGCAAGCGAT
Found at i:3708125 original size:26 final size:26
Alignment explanation
Indices: 3708096--3708148 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3708086 CCTATCCGAT
*
3708096 CTTAGAATGG-GAATGAACTCCGTATG
1 CTTAGAATGGAG-ATGAACTCCCTATG
*
3708122 CTTAGACTGGAGATGAACTCCCTATG
1 CTTAGAATGGAGATGAACTCCCTATG
3708148 C
1 C
3708149 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGAGATGAACTCCCTATG
Found at i:3709144 original size:45 final size:45
Alignment explanation
Indices: 3709093--3709213 Score: 111
Period size: 45 Copynumber: 2.7 Consensus size: 45
3709083 GGGCACGACA
* * *
3709093 ACCATCGGCACAAGCTGGGCCCTGGTGCGGGT-GATTACCTTGACC
1 ACCATCGGCACAAGCTGGGCCCTGGTGCGGGTAG-TTACATCGAAC
* * * * *
3709138 ACCATCGACACAAGAT-AGCCCTTGGTGCGGATAGTTGCATCGAAC
1 ACCATCGGCACAAGCTGGGCCC-TGGTGCGGGTAGTTACATCGAAC
* * *
3709183 ACCATCGGCACATGCTGGGCCATGGTACGGG
1 ACCATCGGCACAAGCTGGGCCCTGGTGCGGG
3709214 CGGTTGCCTC
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
44 4 0.07
45 50 0.86
46 4 0.07
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (45 bp):
ACCATCGGCACAAGCTGGGCCCTGGTGCGGGTAGTTACATCGAAC
Found at i:3709730 original size:26 final size:26
Alignment explanation
Indices: 3709694--3709746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3709684 TTGGTCCAAT
*
3709694 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3709720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3709746 C
1 C
3709747 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3710077 original size:26 final size:26
Alignment explanation
Indices: 3710027--3710078 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3710017 CGATTTGATT
*
3710027 TTAGACTGGAAATGAACTCCGTATGC
1 TTAGACTGGAAATGAACTCCATATGC
* * *
3710053 TTAGATTGGGAATGAACTCTATATGC
1 TTAGACTGGAAATGAACTCCATATGC
3710079 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGC
Found at i:3710497 original size:333 final size:330
Alignment explanation
Indices: 3709541--3710581 Score: 1092
Period size: 332 Copynumber: 3.1 Consensus size: 330
3709531 TTGGTCTGGT
* * *
3709541 TGGGGCTTAGATC-GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCA
1 TGGGGCTTAGA-CATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCA
* ** * * * * * * *
3709605 TTCAGCCGACCGAAGAGACAGGATGTGCAAGTCGAGGATCAGCCCGGTCCCCCTTTGCATGCTGC
65 CTCAGCCGGTCGAAGAGGCAGAATGCGCAAGTTGAGGATCGGCCTGGTCCCCCTTTGCGTGCTGC
** * ** *
3709670 TACCGATCTCGC-T-GTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
130 TGTCGATC-C-CATCGTCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
3709733 TGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAACGTGCGGGTGTTGACCCGACCGGAA-AGG
192 TGAACTTCGTATGCCTAAGTCAACCCAA-AAATGAGCGTGCGGGCGCTGAGCCGACC-GAAGAGG
* * * * * * **
3709797 CAAAATG-TGCAGTCGGAGATCGTCTCGATCCCTCTCTGCGTACTGTCAGTCCCGCTGCCACAAC
255 CATAATGCT-AAGTCGGAGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCAACTGCCACAAC
* * * * **
3709861 TCTTGATCTGAT
319 CCTCGGTCCGGC
* * * *
3709873 TGGGGCTTAGACATGGAATGAAATCTGTATACCTAAGCCAAACCACAAAATGAGCGTGCAGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCAC
** * * *
3709938 TCAGCTAGTCGGAGAGGCAGAATGCCCAAGCTGAGGATCGGCCTGGTCCCCCTTTGCGTGCTGCT
66 TCAGCCGGTCGAAGAGGCAGAATGCGCAAGTTGAGGATCGGCCTGGTCCCCCTTTGCGTGCTGCT
* * * * *
3710003 GTCGATCCCA-CTGCCGATTTGATTTTAGACTGGAAATGAACTCCGTATGCTTAGATTGGGAATG
131 GTCGATCCCATC-GTCGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATG
* * ** * *
3710067 AAC-TCTATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCA
194 AACTTC-GTATGCCTAAGTCAACCCA-AAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCA
* * * * *
3710131 TAATTCGC-AAGTCGTAGATCGGCCCGTTCCCCCTCTGCATGCTGTCGGTCCAACTGCCATAATC
257 TAA-T-GCTAAGTCGGAGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCAACTGCCACAA-C
3710195 CCTCGGTCCGGC
319 CCTCGGTCCGGC
* * * **
3710207 TAGGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCAC
* * * * *
3710272 TCAACCGGTCGAAAAGGCAGAATGCGCAAGTTGGGGATTGGCCTGGT-CCCCTCTGCGTGCTGCT
66 TCAGCCGGTCGAAGAGGCAGAATGCGCAAGTTGAGGATCGGCCTGGTCCCCCTTTGCGTGCTGCT
* * *
3710336 GTCGATCCCATCGTCGGTCTGATCTTAAACTAGGAATGAACTCCGTACGCTTAGACTGAGAATGA
131 GTCGATCCCATCGTCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
3710401 ACTTCGTATGCCAAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATA
195 ACTTCGTATGCCTAAGTCAACCCA-AAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATA
* * * * * **
3710466 ATGCATAAGCCGGGGATCGGATCGGTCCCCCTCTACGTGCTGTCGGTCCTTCTGCCACAACCCTC
259 ATGC-TAAGTCGGAGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCAACTGCCACAACCCTC
3710531 GGTCCGGC
323 GGTCCGGC
3710539 TGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACC
1 TGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACC
3710582 TAAGGCCTCG
Statistics
Matches: 578, Mismatches: 114, Indels: 34
0.80 0.16 0.05
Matches are distributed among these distances:
330 1 0.00
331 9 0.02
332 254 0.44
333 207 0.36
334 107 0.19
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (330 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCAC
TCAGCCGGTCGAAGAGGCAGAATGCGCAAGTTGAGGATCGGCCTGGTCCCCCTTTGCGTGCTGCT
GTCGATCCCATCGTCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTTCGTATGCCTAAGTCAACCCAAAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAAT
GCTAAGTCGGAGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCAACTGCCACAACCCTCGGT
CCGGC
Found at i:3710754 original size:89 final size:91
Alignment explanation
Indices: 3710643--3710833 Score: 219
Period size: 90 Copynumber: 2.1 Consensus size: 91
3710633 ATCGACCATA
* * * *
3710643 ATCGGCACA-GGCTGCCCTTTGGTAC-GAGCACTTGCCTCGACCAC-ATCGACACAAGTTGGGCC
1 ATCGGCACATGCCAGCCCTTTGGTACAG-GCACTTACCTCGACCACTATCGACACAAGATGGGCC
* * *
3710705 TTGGTGCGGGCGATTGCCTCGATCACC
65 TTGGTGCAGGCGATTGCATCGAACACC
* * * * *
3710732 GTCGGCACATGCCAGCCC-TTGGTGCAGGCACTTACCTCGATCACTATCGGCACAAGATGGGCTT
1 ATCGGCACATGCCAGCCCTTTGGTACAGGCACTTACCTCGACCACTATCGACACAAGATGGGCCT
* *
3710796 TGGTGCAGGCGGTTGTATCGAACACC
66 TGGTGCAGGCGATTGCATCGAACACC
3710822 ATCGGCACATGC
1 ATCGGCACATGC
3710834 TGGGCCGTGG
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
89 29 0.35
90 55 0.65
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.21
Consensus pattern (91 bp):
ATCGGCACATGCCAGCCCTTTGGTACAGGCACTTACCTCGACCACTATCGACACAAGATGGGCCT
TGGTGCAGGCGATTGCATCGAACACC
Found at i:3710799 original size:45 final size:44
Alignment explanation
Indices: 3710670--3710846 Score: 131
Period size: 45 Copynumber: 4.0 Consensus size: 44
3710660 TTTGGTACGA
* * * *
3710670 GCACTTGCCTCGACCACATCGACACAAGTTGGGCCTTGGTGCGG
1 GCACTTGCCTCGATCACATCGGCACAAGATGGGCCTTGGTGCAG
* * *** *
3710714 GCGA-TTGCCTCGATCACCGTCGGCACATGCCAGCCCTTGGTGCAG
1 GC-ACTTGCCTCGATCA-CATCGGCACAAGATGGGCCTTGGTGCAG
* *
3710759 GCACTTACCTCGATCACTATCGGCACAAGATGGGCTTTGGTGCAG
1 GCACTTGCCTCGATCAC-ATCGGCACAAGATGGGCCTTGGTGCAG
** ** * * * *
3710804 GCGGTTGTATCGAACACCATCGGCACATGCTGGGCCGTGGTGC
1 GCACTTGCCTCGATCA-CATCGGCACAAGATGGGCCTTGGTGC
3710847 GACTAGTTGC
Statistics
Matches: 101, Mismatches: 27, Indels: 9
0.74 0.20 0.07
Matches are distributed among these distances:
44 15 0.15
45 85 0.84
46 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (44 bp):
GCACTTGCCTCGATCACATCGGCACAAGATGGGCCTTGGTGCAG
Found at i:3710860 original size:90 final size:90
Alignment explanation
Indices: 3710671--3710875 Score: 225
Period size: 90 Copynumber: 2.3 Consensus size: 90
3710661 TTGGTACGAG
* * * * * *
3710671 CACTTGCCTCGACCAC-ATCGACACAAGTTGGGCCTTGGTGCGGGCGATTGCCTCGATCACCGTC
1 CACTTGCCTCGACCACTATCGGCACAAGATGGGCCTTGGTGCAGGCGATTGCATCGAACACCATC
* *
3710735 GGCACATGCCAGCCCTTGGTGCAGG
66 GGCACATGCCAGCCCGTGGTGCAGA
* * * * *
3710760 CACTTACCTCGATCACTATCGGCACAAGATGGGCTTTGGTGCAGGCGGTTGTATCGAACACCATC
1 CACTTGCCTCGACCACTATCGGCACAAGATGGGCCTTGGTGCAGGCGATTGCATCGAACACCATC
** *
3710825 GGCACATGCTGGGCCGTGGTGC-GA
66 GGCACATGCCAGCCCGTGGTGCAGA
* *
3710849 CTAGTTGCCTCGACCACTATCAGCACA
1 C-ACTTGCCTCGACCACTATCGGCACA
3710876 TGTCAAGCCC
Statistics
Matches: 94, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
89 16 0.17
90 78 0.83
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (90 bp):
CACTTGCCTCGACCACTATCGGCACAAGATGGGCCTTGGTGCAGGCGATTGCATCGAACACCATC
GGCACATGCCAGCCCGTGGTGCAGA
Found at i:3712818 original size:26 final size:26
Alignment explanation
Indices: 3712789--3712841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3712779 TCAGTCTGAT
* * *
3712789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
3712815 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
3712841 C
1 C
3712842 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:3713320 original size:24 final size:24
Alignment explanation
Indices: 3713288--3713339 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
3713278 CCCATCTGCG
* *
3713288 TGCTGTCGATCTCGCTGCGGGTCC
1 TGCTGTCGATCCCACTGCGGGTCC
3713312 TGCTGTCGATCCCACTGCGGGTCC
1 TGCTGTCGATCCCACTGCGGGTCC
3713336 TGCT
1 TGCT
3713340 ACCGTAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.06, C:0.35, G:0.31, T:0.29
Consensus pattern (24 bp):
TGCTGTCGATCCCACTGCGGGTCC
Found at i:3714223 original size:45 final size:45
Alignment explanation
Indices: 3714165--3714319 Score: 152
Period size: 45 Copynumber: 3.4 Consensus size: 45
3714155 TGGGCACTTA
* *
3714165 CCTCGACCGCCATCGTCACAAGCTGGGCCCTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGACACAAGCTGGGCCCTGGTGTGGGCGGTTG
* * * * * *
3714210 CCTCAACCACCATCGACATAAGAT-GGCTCTTGGTATGGGCGGTTT
1 CCTCGACCACCATCGACACAAGCTGGGC-CCTGGTGTGGGCGGTTG
* ** * *
3714255 CATCGTA-CACCATCGGTACATGCTGGGCCGTGGTGTGGGCGGTTG
1 CCTCG-ACCACCATCGACACAAGCTGGGCCCTGGTGTGGGCGGTTG
*
3714300 CCTCGACCCCCATCGACACA
1 CCTCGACCACCATCGACACA
3714320 TTTCAAGCCT
Statistics
Matches: 84, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
44 4 0.05
45 76 0.90
46 4 0.05
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.22
Consensus pattern (45 bp):
CCTCGACCACCATCGACACAAGCTGGGCCCTGGTGTGGGCGGTTG
Found at i:3714248 original size:90 final size:90
Alignment explanation
Indices: 3714149--3714317 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 90
3714139 AGGTTGCCCT
* *
3714149 TTGGTATGGGCACTTACCTCG-ACCGCCATC-GTCACAAGCTGGGCCCTGGTGTGGGCGGTTGCC
1 TTGGTATGGGCACTTACATCGTA-CACCATCGGT-ACAAGCTGGGCCCTGGTGTGGGCGGTTGCC
3714212 TCAACCACCATCGACATAAGATGGCTC
64 TCAACCACCATCGACATAAGATGGCTC
** * * *
3714239 TTGGTATGGGCGGTTTCATCGTACACCATCGGTACATGCTGGGCCGTGGTGTGGGCGGTTGCCTC
1 TTGGTATGGGCACTTACATCGTACACCATCGGTACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
* *
3714304 GACCCCCATCGACA
66 AACCACCATCGACA
3714318 CATTTCAAGC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 65 0.96
91 3 0.04
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.24
Consensus pattern (90 bp):
TTGGTATGGGCACTTACATCGTACACCATCGGTACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
AACCACCATCGACATAAGATGGCTC
Found at i:3716733 original size:26 final size:26
Alignment explanation
Indices: 3716697--3716749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3716687 CCAGTCTGAT
3716697 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
3716723 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
3716749 C
1 C
3716750 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:3717085 original size:26 final size:26
Alignment explanation
Indices: 3717040--3717092 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3717030 CTGATCTGAT
*
3717040 CTTAGACTAGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
3717066 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3717092 C
1 C
3717093 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3718674 original size:26 final size:26
Alignment explanation
Indices: 3718630--3718682 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3718620 TCGGTCTGAT
* *
3718630 CTTAGATTGGCAATTAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
3718656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
3718682 C
1 C
3718683 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:3720049 original size:45 final size:44
Alignment explanation
Indices: 3719995--3720118 Score: 115
Period size: 45 Copynumber: 2.8 Consensus size: 44
3719985 ATACAAGCTA
3719995 GGCCC-TGGTGCGGGCGGTTGCCTCGACGACCATCACCACAAGAT
1 GGCCCATGGTGCGGGCGGTTGCCTCGAC-ACCATCACCACAAGAT
* * ** * * *
3720039 GGCCCATGGTGCTGGTGGTTGTTTCGAACACCATCAGCACATGTT
1 GGCCCATGGTGCGGGCGGTTGCCTCG-ACACCATCACCACAAGAT
* * * *
3720084 GGGCCATGGTACGGACGGTTGCCTCAACCACCATC
1 GGCCCATGGTGCGGGCGGTTGCCTCGA-CACCATC
3720119 GGCACATGTC
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
44 6 0.10
45 54 0.87
46 2 0.03
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (44 bp):
GGCCCATGGTGCGGGCGGTTGCCTCGACACCATCACCACAAGAT
Found at i:3720673 original size:161 final size:162
Alignment explanation
Indices: 3720418--3720771 Score: 460
Period size: 161 Copynumber: 2.2 Consensus size: 162
3720408 ATTCGACTGG
** * * *
3720418 GCTTAGACCAGGAATGAACTCCATATGCCAAAGTCAACCTACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
** * * * * *
3720483 CCGGCTGGAGAGGCAGGATACGTAAGCCGAGGATCGGTCCGATCCCCCTCTACATGCTGCTGTC-
66 CCGGCCAGAGAGACAGGATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACTGTCA
3720547 GATCTGATCTTAGACT-AGAATTAACTCCATAT
131 G-TCTGATCTTAGACTGAGAATTAACTCCATAT
* ** * * *
3720579 GCTTAGACTGGGAATGAACACCGTATGCCTCAGTCAACCCACGAAACGAACGTGTGTGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * *
3720644 TCGGCCAGAGAGATAGGATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACTGTCA
66 CCGGCCAGAGAGACAGGATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACTGTCA
* * *
3720709 GTCTGATTTTAGACTGGGAATTAACTCCGTAT
131 GTCTGATCTTAGACTGAGAATTAACTCCATAT
3720741 GCTTAGACTGGGAATGAACTCCGTATGCCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCAA
3720772 CCCATGAAAT
Statistics
Matches: 163, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
161 120 0.74
162 43 0.26
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (162 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
CCGGCCAGAGAGACAGGATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACTGTCA
GTCTGATCTTAGACTGAGAATTAACTCCATAT
Found at i:3720753 original size:26 final size:26
Alignment explanation
Indices: 3720717--3720768 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3720707 CAGTCTGATT
*
3720717 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
3720743 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
3720769 CAACCCATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:3720925 original size:26 final size:26
Alignment explanation
Indices: 3720895--3720946 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3720885 CGGTCTAATA
3720895 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
3720921 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
3720947 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:3721949 original size:44 final size:45
Alignment explanation
Indices: 3721900--3721999 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
3721890 GCCTCGACCG
*
3721900 CCATCGGCACAAGATGCCTC-TGGTGCAGGCGGTTGCATCGAACA
1 CCATCGGCACAAGATGCCTCATGGTGCAGGCGGTTACATCGAACA
* * ** * *
3721944 CCATCGGCACATGCTGGGTCATGGTGCAGGCGGTTACCTCGACCA
1 CCATCGGCACAAGATGCCTCATGGTGCAGGCGGTTACATCGAACA
3721989 CCATCGGCACA
1 CCATCGGCACA
3722000 TGTCGAGCCC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 16 0.33
45 32 0.67
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (45 bp):
CCATCGGCACAAGATGCCTCATGGTGCAGGCGGTTACATCGAACA
Found at i:3722176 original size:26 final size:26
Alignment explanation
Indices: 3722138--3722190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3722128 CCGATTCGAT
3722138 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
3722164 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3722190 C
1 C
3722191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3722679 original size:26 final size:26
Alignment explanation
Indices: 3722650--3722702 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3722640 CCAGTCCGAT
3722650 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
3722676 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
3722702 C
1 C
3722703 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:3722853 original size:26 final size:26
Alignment explanation
Indices: 3722824--3722876 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3722814 TCAGTCTGAT
3722824 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
3722850 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
3722876 C
1 C
3722877 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:3722915 original size:174 final size:174
Alignment explanation
Indices: 3722606--3722933 Score: 485
Period size: 174 Copynumber: 1.9 Consensus size: 174
3722596 TCTTGTTGCG
**
3722606 GGTCCCCCTCTACGTGCTACTGTCGATCCCGCTGCCAGTCCGATCTTAGACTGGGAATGAACTCC
1 GGTCCCCCTCTACGTGCTACTACCGATCCCGCTGCCAGTCCGATCTTAGACTGGGAATGAACTCC
* ** * *
3722671 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGC
66 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCCC
3722736 TCAGCCGACCGGAGAGGCAGAATGCATAAGCTAGGGATCATCTC
131 TCAGCCGACCGGAGAGGCAGAATGCATAAGCTAGGGATCATCTC
* ** * * * *
3722780 GGTCTCCCTCTACGTGCTGTTACCGATCCCGTTGTCAGTCTGATCTTAGACTGGGAATGAACTCT
1 GGTCCCCCTCTACGTGCTACTACCGATCCCGCTGCCAGTCCGATCTTAGACTGGGAATGAACTCC
* * *
3722845 GTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCTGCCCC
66 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCCC
**
3722910 TCAGCCGGTCGGAGAGGCAGAATG
131 TCAGCCGACCGGAGAGGCAGAATG
3722934 TGCAAGTCGG
Statistics
Matches: 135, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
174 135 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (174 bp):
GGTCCCCCTCTACGTGCTACTACCGATCCCGCTGCCAGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCCC
TCAGCCGACCGGAGAGGCAGAATGCATAAGCTAGGGATCATCTC
Found at i:3723054 original size:26 final size:26
Alignment explanation
Indices: 3723018--3723070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3723008 CTGGTTTGAT
*
3723018 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3723044 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3723070 C
1 C
3723071 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.