Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 34 of 120
Found at i:3724170 original size:26 final size:26
Alignment explanation
Indices: 3724141--3724193 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3724131 GCCGTTCGAT
3724141 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
3724167 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
3724193 C
1 C
3724194 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:3724710 original size:26 final size:26
Alignment explanation
Indices: 3724681--3724733 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3724671 CCAATCTGAT
*
3724681 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
3724707 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
3724733 C
1 C
3724734 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:3724894 original size:26 final size:25
Alignment explanation
Indices: 3724855--3724906 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
3724845 CCGGTCTGAT
3724855 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
3724880 CTTAGACGTGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
3724906 C
1 C
3724907 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:3724956 original size:173 final size:177
Alignment explanation
Indices: 3724659--3725155 Score: 542
Period size: 173 Copynumber: 2.8 Consensus size: 177
3724649 GGTTCTACTA
* ** *
3724659 CCGATCCTGCTGCCAATCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAA
1 CCGATCCCGCTGCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGAATGAA
* * * * * *
3724724 CTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTTAGCCGACTGGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAA
* * * *
3724789 TACGCAAGTCAGGGATCATCTCGATCCCCCTCTGCGTG-T-TGT-T-AT
130 TACGTAAGTCAGGGATCAGCCCGATCCCCC-CTACGTGCTCTGTCTGAT
3724834 -CGATCCCGCTGCCGGTCTGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACGTGGAATGAA
1 CCGATCCCGCTGCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGAATGAA
* *
3724897 CTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAA
* * *
3724962 TACGTAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTACCTGTCCTGCT
130 TACGTAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCT--CTGT-CTGAT
* * * * * * * *
3725013 GCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGGAT
1 -CCG-ATCCCGCTG-CCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACT-GGAAT
* * * *
3725078 GAACTCCGCATGCCTAA-CTCAACCC-TCGAAACGAGCGTACGGGCACTCAACCAACCAGAGAGG
62 GAACTCCGTATGCCTAAGC-CAACCCAT-GAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGG
*
3725141 CAGGATACGTAAGTC
125 CAGAATACGTAAGTC
3725156 GAGTATTAAC
Statistics
Matches: 272, Mismatches: 35, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
172 6 0.02
173 114 0.42
174 27 0.10
176 3 0.01
178 1 0.00
179 1 0.00
181 2 0.01
182 6 0.02
183 20 0.07
184 92 0.34
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (177 bp):
CCGATCCCGCTGCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAAT
ACGTAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCTCTGTCTGAT
Found at i:3725090 original size:26 final size:26
Alignment explanation
Indices: 3725038--3725090 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3725028 CTGGTCCGAT
*
3725038 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCACATG
* * *
3725064 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGCGAATGAACTCCACATG
3725090 C
1 C
3725091 CTAACTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCACATG
Found at i:3726076 original size:45 final size:45
Alignment explanation
Indices: 3726027--3726184 Score: 120
Period size: 45 Copynumber: 3.5 Consensus size: 45
3726017 GTACGGGCAC
* * * * *
3726027 TTGCCTCGACCACCATTGGCACAAGCTGGGCCC-TGGTGTGGGCGG
1 TTGCCTCAACCACCATCGGCACAAGAT-GGCCCATGGTGCGGGCGA
*
3726072 TTGCCTCAACCACCATCGTCACAAGATGGCCCATGGTGCGGGCGA
1 TTGCCTCAACCACCATCGGCACAAGATGGCCCATGGTGCGGGCGA
* ** * ** * * * * *
3726117 TTGCATCAAAAACCGTCGGCACGTGTTGGGCCGTGGCGCGGGCGG
1 TTGCCTCAACCACCATCGGCACAAGATGGCCCATGGTGCGGGCGA
* * *
3726162 TTGCCTCTACCATCATCGACACA
1 TTGCCTCAACCACCATCGGCACA
3726185 TGTCGAGCCC
Statistics
Matches: 86, Mismatches: 26, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
44 5 0.06
45 81 0.94
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACAAGATGGCCCATGGTGCGGGCGA
Found at i:3727002 original size:26 final size:26
Alignment explanation
Indices: 3726973--3727023 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3726963 CAGTCTGATC
*
3726973 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
3726999 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
3727024 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:3728091 original size:13 final size:13
Alignment explanation
Indices: 3728073--3728110 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
3728063 CAATGGCACA
3728073 TGATGGCACATGG
1 TGATGGCACATGG
3728086 TGATGGCACATGG
1 TGATGGCACATGG
3728099 TGATGGCACATG
1 TGATGGCACATG
3728111 CATCGACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.37, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3728214 original size:45 final size:45
Alignment explanation
Indices: 3728172--3728309 Score: 127
Period size: 45 Copynumber: 3.1 Consensus size: 45
3728162 TCGCCATCAG
3728172 CACAAGCTGGGCCCTGGTGTGAGCGGTTGCCTCAACCACCATCGA
1 CACAAGCTGGGCCCTGGTGTGAGCGGTTGCCTCAACCACCATCGA
* * * * * * * *
3728217 CACAAGAT-TGCCCTAGAGCGGGCGGCTGCATCGAA-CACCATCGA
1 CACAAGCTGGGCCCTGGTGTGAGCGGTTGCCTC-AACCACCATCGA
* * * * * *
3728261 CACATGCTGGGTCATGGTGTGAGTGGTTGCCTCGACCACCATCGG
1 CACAAGCTGGGCCCTGGTGTGAGCGGTTGCCTCAACCACCATCGA
3728306 CACA
1 CACA
3728310 TGCCGAGCCC
Statistics
Matches: 68, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
44 33 0.49
45 35 0.51
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (45 bp):
CACAAGCTGGGCCCTGGTGTGAGCGGTTGCCTCAACCACCATCGA
Found at i:3730894 original size:13 final size:13
Alignment explanation
Indices: 3730876--3730900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3730866 CAATGGCACA
3730876 TGATGGCGCATGG
1 TGATGGCGCATGG
3730889 TGATGGCGCATG
1 TGATGGCGCATG
3730901 CATAGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (13 bp):
TGATGGCGCATGG
Found at i:3731442 original size:26 final size:26
Alignment explanation
Indices: 3731402--3731454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3731392 CCGGTCTAAT
*
3731402 CTTAGACTGGCAATGGACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
3731428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
3731454 C
1 C
3731455 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:3731817 original size:45 final size:45
Alignment explanation
Indices: 3731727--3731874 Score: 134
Period size: 45 Copynumber: 3.3 Consensus size: 45
3731717 CGGGGACTTA
* ** * * * **
3731727 CCTCGACCACCATCGGCACAAGCTGGGGCCTAGTACGGGTAGTTG
1 CCTCGACCACCATTGGCACAAGCTGGCCCCTGGTGCGAGCGGTTG
* * *
3731772 CCTCGACCACCATTGGCATAAGGTGGCCCCTGGTGTGAGCGGTTG
1 CCTCGACCACCATTGGCACAAGCTGGCCCCTGGTGCGAGCGGTTG
* * * * * * *
3731817 CATCGAACACCATTGGCACATGCTGGGCCGTGGTGCGGGCGGTTA
1 CCTCGACCACCATTGGCACAAGCTGGCCCCTGGTGCGAGCGGTTG
3731862 CCTCGACCACCAT
1 CCTCGACCACCAT
3731875 CGACATATGC
Statistics
Matches: 80, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 80 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATTGGCACAAGCTGGCCCCTGGTGCGAGCGGTTG
Found at i:3732819 original size:45 final size:44
Alignment explanation
Indices: 3732765--3732943 Score: 205
Period size: 45 Copynumber: 4.0 Consensus size: 44
3732755 GCACAAGTTG
* * *
3732765 GGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACATGCT
1 GGCCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGCACATGCT
* * * * *
3732809 AGGCCTTGGTGCGGGCGATTGCTTCGACCACCATCGGCACAAGAT
1 -GGCCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGCACATGCT
* * *
3732854 GGCCTCTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGTTT
1 GGCCT-TGGTGCAGGCGGTTGCCTCGACCACCATCGGCACATG-CT
* * *
3732900 GGCCGTGGTGCAGGCGGTTGCCTCGGCCACCATCGACACATGCT
1 GGCCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGCACATGCT
3732944 TAGCCCTGAT
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
44 6 0.05
45 103 0.90
46 5 0.04
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (44 bp):
GGCCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGCACATGCT
Found at i:3732909 original size:90 final size:90
Alignment explanation
Indices: 3732753--3732939 Score: 250
Period size: 90 Copynumber: 2.1 Consensus size: 90
3732743 GACACTTTAA
* * * * *
3732753 CGGCACAAGTTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACATGCTAGGCCTTGG
1 CGGCACAAGATGGGCCCTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGCTAGGCCGTGG
* *
3732818 TGCGGGCGATTGCTTCGACCACCAT
66 TGCAGGCGATTGCCTCGACCACCAT
* *
3732843 CGGCACAAGAT-GGCCTCTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGTTTGGCCGTG
1 CGGCACAAGATGGGCC-CTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGCTAGGCCGTG
* *
3732907 GTGCAGGCGGTTGCCTCGGCCACCAT
65 GTGCAGGCGATTGCCTCGACCACCAT
*
3732933 CGACACA
1 CGGCACA
3732940 TGCTTAGCCC
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 4 0.05
90 80 0.95
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.20
Consensus pattern (90 bp):
CGGCACAAGATGGGCCCTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGCTAGGCCGTGG
TGCAGGCGATTGCCTCGACCACCAT
Found at i:3733925 original size:26 final size:26
Alignment explanation
Indices: 3733896--3733948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3733886 CCGGTCTGAT
3733896 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3733922 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3733948 C
1 C
3733949 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3734843 original size:13 final size:13
Alignment explanation
Indices: 3734825--3734849 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3734815 CAATGGCACA
3734825 TGATGGCACATGG
1 TGATGGCACATGG
3734838 TGATGGCACATG
1 TGATGGCACATG
3734850 CATCAACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3734941 original size:45 final size:45
Alignment explanation
Indices: 3734886--3735004 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
3734876 CCTTGGTACG
* * * * * *
3734886 GGGCACTTGCCTCGACCGCCATCGGTACAAGCTGGGTGCTAGTGT
1 GGGCAGTTGCCTCGACCACCATCGGTACAAGATGGCTCCTAGTGC
* * * * *
3734931 GGG-TGATTGCCTCAACCACCATTGGCACAAGATGGCTCCTGGTGC
1 GGGCAG-TTGCCTCGACCACCATCGGTACAAGATGGCTCCTAGTGC
3734976 GGGCAGTTGCCTCGACCACCATCGGTACA
1 GGGCAGTTGCCTCGACCACCATCGGTACA
3735005 TATCGACCCC
Statistics
Matches: 57, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
45 56 0.98
46 1 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
GGGCAGTTGCCTCGACCACCATCGGTACAAGATGGCTCCTAGTGC
Found at i:3736221 original size:13 final size:13
Alignment explanation
Indices: 3736203--3736227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3736193 CAATGGCACA
3736203 TGATGGCACATGG
1 TGATGGCACATGG
3736216 TGATGGCACATG
1 TGATGGCACATG
3736228 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3736924 original size:26 final size:26
Alignment explanation
Indices: 3736881--3736932 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3736871 GTCAGTTTGA
* *
3736881 TCTTAGACTGGGAATGAACTCTATAT
1 TCTTAGACTAGGAATGAACTCCATAT
* *
3736907 TCTTAGACTATGATTGAACTCCATAT
1 TCTTAGACTAGGAATGAACTCCATAT
3736933 GCCTAAGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCATAT
Found at i:3737218 original size:26 final size:26
Alignment explanation
Indices: 3737178--3737239 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
3737168 CCCGGTCCCC
*
3737178 CTCTGTATGCTTAGATTGGGAATGAA
1 CTCTGTATGCATAGATTGGGAATGAA
*
3737204 CTCTGTATGCATAGATTGGGAATGCA
1 CTCTGTATGCATAGATTGGGAATGAA
*
3737230 CTCCGTATGC
1 CTCTGTATGC
3737240 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (26 bp):
CTCTGTATGCATAGATTGGGAATGAA
Found at i:3737460 original size:305 final size:305
Alignment explanation
Indices: 3736882--3737493 Score: 731
Period size: 305 Copynumber: 2.0 Consensus size: 305
3736872 TCAGTTTGAT
* * * * *
3736882 CTTAGACTGGGAATGAACTCTATATTCTTAGACTATGATTGAACTCCATATGCCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTCTATATGCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * ** *
3736947 ATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGTCGAGGCATAATGCACAAGCCAGGGATCGGCCC
66 ACGAAACGAGCGTGCAGGCACTGAGCAGGTCGAAGAGGCATAATACACAAGCCAGGGATCGGCCC
* ** * * *
3737012 GGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATG
131 GGTCCCCCTCTACGTGCCATCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATG
* * * * *
3737077 GAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGTGCTCAGCCGATCAGAGA
196 GAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCAGAGA
* *
3737142 GGTAGAATGTGCAAGCCGGGGACCAGCCCGGTCCCCCTCTGTATG
261 GGCAGAATGTGCAAGCCGGGGACCAGCCCGATCCCCCTCTGTATG
* * * * * *
3737187 CTTAGATTGGGAATGAACTCTGTATGCATAGATTGGGAATGCACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCTATATGCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
* * ** * *
3737252 ACGAAATGAGCGTGCAGGCACTGAGTAGG-CTGAAGAGTTATAATACGCAAGCTAGGGATCGGCC
66 ACGAAACGAGCGTGCAGGCACTGAGCAGGTC-GAAGAGGCATAATACACAAGCCAGGGATCGGCC
** *
3737316 CGGTCCCCCTCTACGTGCCATCGGTCCCGCTGTGACAACCCTCGATCCGACTGGGGCTTAGACAT
130 CGGTCCCCCTCTACGTGCCATCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACAT
** ** * * *
3737381 GGAACGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGTCGGTCGGAG
195 GGAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCAGAG
* * * * * *
3737446 AGGCAGATTGTGCAAGCTGGGGATCGGCTCGATCCCCCTCTGTGTG
260 AGGCAGAATGTGCAAGCCGGGGACCAGCCCGATCCCCCTCTGTATG
3737492 CT
1 CT
3737494 GCTACCGATC
Statistics
Matches: 253, Mismatches: 53, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
304 1 0.00
305 252 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (305 bp):
CTTAGACTGGGAATGAACTCTATATGCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCAGGCACTGAGCAGGTCGAAGAGGCATAATACACAAGCCAGGGATCGGCCC
GGTCCCCCTCTACGTGCCATCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATG
GAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCAGAGA
GGCAGAATGTGCAAGCCGGGGACCAGCCCGATCCCCCTCTGTATG
Found at i:3738472 original size:23 final size:23
Alignment explanation
Indices: 3738442--3738497 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
3738432 TCAACCATCA
3738442 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3738465 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3738488 ATGGCACATG
1 ATGGCACATG
3738498 CATCGACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.23, C:0.14, G:0.38, T:0.25
Consensus pattern (23 bp):
ATGGCACATGATGGTGCATGGTG
Found at i:3738587 original size:45 final size:45
Alignment explanation
Indices: 3738528--3738737 Score: 179
Period size: 45 Copynumber: 4.7 Consensus size: 45
3738518 GGCTGCCCTT
* * ** *
3738528 TGGTACGGGCAGTTGCCTCGACCACCATCGGCATAAGCTGGGCCC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCCC
* * * * * *
3738573 TGGTGCAGGTAGTTGCCTTGACCGCCATTGGTACAAAATGGCCCC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCCC
* * * *** * *
3738618 TGGTGTGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCA
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCCC
* * * *
3738663 TGGTGCGGGC-GATTGCCTCGACCGCCATTGGCATAAAATGACCCC
1 TGGTGCGGGCAG-TTGCCTCGACCACCATCGGCACAAAATGGCCCC
* *
3738708 TGGTGCGGGCAGTTGCATCGAACACCATCG
1 TGGTGCGGGCAGTTGCCTCGACCACCATCG
3738738 ACGCATGCTG
Statistics
Matches: 122, Mismatches: 41, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
44 1 0.01
45 120 0.98
46 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCCC
Found at i:3738661 original size:90 final size:90
Alignment explanation
Indices: 3738528--3738787 Score: 315
Period size: 90 Copynumber: 2.9 Consensus size: 90
3738518 GGCTGCCCTT
* * * * * * * *
3738528 TGGTACGGGCAGTTGCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTGCAGGTAG-TTGCCTT
1 TGGTGCGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGC-GGGAGATTGCCTC
* *
3738592 GACCGCCATTGGTACAAAATGGCCCC
65 GACCGCCATTGGCACAAAATGACCCC
* *
3738618 TGGTGTGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGCCTCG
1 TGGTGCGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGAGATTGCCTCG
*
3738683 ACCGCCATTGGCATAAAATGACCCC
66 ACCGCCATTGGCACAAAATGACCCC
* * * * * * *
3738708 TGGTGCGGGCAGTTGCATCGAACACCATCGACGCATGCTGGGCCATGGTACGAGCGGTTGCCTCA
1 TGGTGCGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGAGATTGCCTCG
*
3738773 ACCACCATTGGCACA
66 ACCGCCATTGGCACA
3738788 TGCGGAGCTT
Statistics
Matches: 147, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
89 3 0.02
90 144 0.98
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (90 bp):
TGGTGCGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGAGATTGCCTCG
ACCGCCATTGGCACAAAATGACCCC
Found at i:3738790 original size:45 final size:45
Alignment explanation
Indices: 3738528--3738790 Score: 134
Period size: 45 Copynumber: 5.8 Consensus size: 45
3738518 GGCTGCCCTT
* * * * * *
3738528 TGGTACGGGCAGTTGCCTCGACCACCATCGGCATAAGCTGGGCCC
1 TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGCTGGGCCA
* ** ** * * * *** * *
3738573 TGGTGCAGGTAGTTGCCTTGACCGCCATTGGTACAAAATGGCCCC
1 TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGCTGGGCCA
* * *
3738618 TGGTGTGGGCAGTTGCATCGAA-CACCATCGGCACATGCTGGGCCA
1 TGGTGCGGGCGGTTGCCTC-AACCACCATCGGCACATGCTGGGCCA
* * * * * *** ** *
3738663 TGGTGCGGGCGATTGCCTCGACCGCCATTGGCATAAAATGACCCC
1 TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGCTGGGCCA
* * * *
3738708 TGGTGCGGGCAGTTGCATCGAA-CACCATCGACGCATGCTGGGCCA
1 TGGTGCGGGCGGTTGCCTC-AACCACCATCGGCACATGCTGGGCCA
* * *
3738753 TGGTACGAGCGGTTGCCTCAACCACCATTGGCACATGC
1 TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGC
3738791 GGAGCTTCGA
Statistics
Matches: 153, Mismatches: 61, Indels: 8
0.69 0.27 0.04
Matches are distributed among these distances:
44 3 0.02
45 148 0.97
46 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGCTGGGCCA
Found at i:3739701 original size:333 final size:331
Alignment explanation
Indices: 3739083--3740143 Score: 1211
Period size: 333 Copynumber: 3.2 Consensus size: 331
3739073 GGTCCCTCGA
* ** * *
3739083 TCCGATTGGGGCTTAGATCA-GGAATGAACTCTGTATGCCTAAGTGAACACATGAAATGAGCGTA
1 TCCGGTTGGGGCTTAGA-CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTA
** * * * * *
3739147 CGGGCGCTCAACCAGCCAGAGAGGCAGGATGCGCAAGCCGATGATCGGTCTGATCCCGCTCTGCG
65 CGGGCGCTCAGTC-GGCGGAGAGGCAGGATGCGCAAGCCGAAGATCGGCCTGATCCCCCTCTGCG
* * * *
3739212 TGCTACTGTCGATCCCACTGTCGAAT-CGA-ATTAGACTGGGAATGAACTCCATATGCTTAGACT
129 TGCTGCTGTCAATCCCACTGTCG-GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* * * * * * * *
3739275 GGGAGTGAACTCCGTATACCTAAGTCAACCCACTAAACGAGCGTGCGGGTGCTGAGCTAGCTGAA
193 -GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAACCAGCCGAA
* * *
3739340 GAGGCATAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTATCGATCCCGCTGCCA
257 GAGGCATAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGCCA
*
3739405 CAACCCTCGG
322 CAACCCTCAG
* * * * *
3739415 TCCGGCTAGTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCC
1 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTAC
* * * * *
3739480 AGGCACTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGAAGACCGACCT-AGTCCCCCTCTGCG
66 GGGCGCTCAGTCGG-CGGAGAGGCAGGATGCGCAAGCCGAAGATCGGCCTGA-TCCCCCTCTGCG
* * ** *
3739544 TGATGCTGTCAATCCCGCTGTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGATTAGACTA
129 TGCTGCTGTCAATCCCACTGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-
* * * *
3739609 GGAATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCATGCACTGAACC-GACCGAA
193 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAACCAG-CCGAA
* * * * * ** *
3739673 GATGCATAATGCATAAG-CCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCTGGCTCCC
257 GAGGCATAATGCGTAAGTCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGCC
3739737 ACAACCCTCAG
321 ACAACCCTCAG
* * * *
3739748 TTCGGTTGGGGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGTGTAC
1 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTAC
* * * * * *
3739813 GGGCGCTCAGTTGGCTGGAGAGGCAGGATGCACAAGCTGAGGATCGGCCTGATCCCCCTATGCAT
66 GGGCGCTCAGTCGGC-GGAGAGGCAGGATGCGCAAGCCGAAGATCGGCCTGATCCCCCTCTGCGT
**
3739878 GCTGCTACCAATCCCACTGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
130 GCTGCTGTCAATCCCACTGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * * * *
3739943 AAATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG-AGGGCGCAGAGCCAGTCGGAG
195 -AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-GGCGCTGAACCAGCCGAAG
* * * * *
3740007 AGGCATAAT-CGGTAAGTCGACGATCGACCCGGTCTCCTTCTACGTGCTATCGGTCCCGCTGCCA
258 AGGCATAATGC-GTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGCCA
*
3740071 CAACCCTTAG
322 CAACCCTCAG
* *
3740081 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCATGAAATGAGCGT
1 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGT
3740144 GTCGGTGCTT
Statistics
Matches: 601, Mismatches: 114, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
331 5 0.01
332 130 0.22
333 462 0.77
334 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (331 bp):
TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTAC
GGGCGCTCAGTCGGCGGAGAGGCAGGATGCGCAAGCCGAAGATCGGCCTGATCCCCCTCTGCGTG
CTGCTGTCAATCCCACTGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAACCAGCCGAAGAGG
CATAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAAC
CCTCAG
Found at i:3739947 original size:26 final size:26
Alignment explanation
Indices: 3739907--3739959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3739897 TCGGTCCGAT
*
3739907 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
3739933 CTTAGACTGGAAATGAAGTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
3739959 C
1 C
3739960 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:3740292 original size:26 final size:26
Alignment explanation
Indices: 3740256--3740314 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
3740246 CTCGGTTCGA
3740256 TCCG-ATG-TTAGACTGG-GAATGAAC
1 TCCGTATGCTTAGACTGGAG-ATGAAC
*
3740280 TTCGTATGCTTAGACTGGAGATGAAC
1 TCCGTATGCTTAGACTGGAGATGAAC
3740306 TCCGTATGC
1 TCCGTATGC
3740315 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.77
27 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGAGATGAAC
Found at i:3741415 original size:45 final size:44
Alignment explanation
Indices: 3741257--3741414 Score: 138
Period size: 45 Copynumber: 3.5 Consensus size: 44
3741247 GTAAGGGCAC
*
3741257 TTGCCTCGACCACCATCGGA-ACAAGCTGGGCCCTAGTGCAGGCGG
1 TTGCCTCGACCACCATC-GACACAAGCTGGGCCCTGGTGC-GGCGG
* * * * * * * *
3741302 TTACCTCTACCACCATTGCCACAAGATGGCCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTG-CGGCGG
* * * * * *
3741347 TTGCATCGAACACTATCGGCACATGCTGGGCCGTGGTGCGGACGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGG-CGG
3741392 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
3741415 TTTCGAGCCC
Statistics
Matches: 84, Mismatches: 26, Indels: 6
0.72 0.22 0.05
Matches are distributed among these distances:
44 3 0.04
45 81 0.96
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGCGG
Found at i:3741898 original size:26 final size:26
Alignment explanation
Indices: 3741869--3741920 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3741859 CCAGTTCGAT
*
3741869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3741895 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3741921 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3742276 original size:26 final size:26
Alignment explanation
Indices: 3742219--3742277 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
3742209 CTCGATTTGG
3742219 TTCG-ATG-TTAGACTGGGAATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
* * *
3742243 TCCTTATGCTTAGACTGGGGATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
3742269 TTCGTATGC
1 TTCGTATGC
3742278 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 2 0.07
25 3 0.11
26 23 0.82
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (26 bp):
TTCGTATGCTTAGACTGGGAATGAAC
Found at i:3743936 original size:196 final size:196
Alignment explanation
Indices: 3743589--3743942 Score: 440
Period size: 196 Copynumber: 1.8 Consensus size: 196
3743579 AATGCACTAT
* ** * * ** *
3743589 GTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGTGCTTAGCCGGTCGGAGAGGCAGAATACG
1 GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAAAGAGGCAGAATACA
* ** * * *
3743654 CAAGCTGAGGATCGGCCCGGTCCCCTCTAGATGCTATCGATCCTGCTGCTAGTCCTACTGTCGCA
66 CAAGCTGAGGATCGACCCGGTCCCCTCTAGATGCTATCGATCCCACTGCGAGTCCTACTGCCACA
*
3743719 ACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTTTGTGTGCTTAGACTGGGGATGAACTT
131 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTGTGCTTAGACTGGGGATGAACTT
3743784 C
196 C
* * * **
3743785 GTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCAGCCGGCCAAAGAGGTAGGATGTA
1 GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAAAGAGGCAGAATACA
* * * * * *
3743850 TAAGCTGAGGATCGACCCGGTCCTCTCT-GCATGCTGTCGATCCCATTGCGGGTCCTGCTGCCAC
66 CAAGCTGAGGATCGACCCGGTCCCCTCTAG-ATGCTATCGATCCCACTGCGAGTCCTACTGCCAC
* *
3743914 AACCCTCGGTTCGGTCTGATCTTAGACTG
130 AACCCTCGATCCGGTCTGATCTTAGACTG
3743943 TGAGCGCACT
Statistics
Matches: 129, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
195 1 0.01
196 128 0.99
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAAAGAGGCAGAATACA
CAAGCTGAGGATCGACCCGGTCCCCTCTAGATGCTATCGATCCCACTGCGAGTCCTACTGCCACA
ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTGTGCTTAGACTGGGGATGAACTT
C
Found at i:3745247 original size:26 final size:26
Alignment explanation
Indices: 3745211--3745263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3745201 TCGATTCGAT
* *
3745211 CTTAGACTGGGCATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3745237 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3745263 C
1 C
3745264 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3745624 original size:27 final size:26
Alignment explanation
Indices: 3745568--3745624 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
3745558 GTCTGATCTT
* *
3745568 AGACTGGGAATGAACACCGTATCCTT
1 AGACTGGGAATGAACACCATATCCTA
* * *
3745594 AGACTGGGGATGAACTCTATATGCCTA
1 AGACTGGGAATGAACACCATAT-CCTA
3745621 AGAC
1 AGAC
3745625 AGCCCATAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
AGACTGGGAATGAACACCATATCCTA
Found at i:3745942 original size:26 final size:26
Alignment explanation
Indices: 3745906--3745958 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3745896 CCGATCTGAT
3745906 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
3745932 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3745958 C
1 C
3745959 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3745961 original size:341 final size:344
Alignment explanation
Indices: 3745559--3746316 Score: 943
Period size: 341 Copynumber: 2.2 Consensus size: 344
3745549 CTCGGTCCGG
** * * * *
3745559 TCTGATCTTAGACTGGGAATGAACACCGTATCCTTAGACTGGGGATGAACTCTATATGCCTAAGA
1 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * ** * * *
3745624 CAGCCCATAAAACAAGCGTGTGGGCACTCAGCCGGCTAGAGAGGCAGGATGCGCAAGCCGGGGAT
66 CAACCCATAAAACAAGCATACGGGCACTCAGCCGGCCAGAGAGGCAGGATACGCAAGCCGAGGAT
* * * * * * * *
3745689 CGACCCGGTCCCCTCTGCGTG-TCGTCGATCCCGCTGCGGGTCTTTCTACCACAACCCTCGGTCT
131 CGACACGATCCCCTCTGCATGCT-ATCGATCCCGCTACGGGTCCTGCTAACACAACCCTCGGTCT
* ** * * *
3745753 GGTTTGATGTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCATGAAACGAGCATGCTGG
195 GATCCGATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGG
3745818 CACATAGCCAGTCGGAGAGGCAGAATGCACAAG-TCGAGGATCGACTC-GGTCCCTCTCTACATG
260 CACATAGCCAGTCGGAGAGGCAGAATGCACAAGCT-GAGGATCGACTCAGGTCCC-CTCTACATG
*
3745881 CTG-T-T-GATCCCACTACCGA
323 CTGCTATCAATCCCACTACCGA
3745900 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
** ** * *
3745965 CAACCCACGAAATGAGCATACGGGCACTCAGTCGGCCAGAGAGGTAGGATACGCAAGCCGAGGAT
66 CAACCCATAAAACAAGCATACGGGCACTCAGCCGGCCAGAGAGGCAGGATACGCAAGCCGAGGAT
* * *
3746030 CGACACGATCCCCTCTGCATGCTATCGATCTCGCTACGGGTCCTGCTAACGCAACCCTCGGTTTG
131 CGACACGATCCCCTCTGCATGCTATCGATCCCGCTACGGGTCCTGCTAACACAACCCTCGGTCTG
** * * * * *
3746095 ATCCGATCTTAGACTGGGAGTGCACTACGTATGCCTTGGTCATCCCAAGAAATGAGCGTGCAGGC
196 ATCCGATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGGC
* * *
3746160 ACATAGCCAGTCGGAGAGGCAGAATGCACAAGCTGAGGATCGACTCAGTTCCCCTCTGCGTGCTG
261 ACATAGCCAGTCGGAGAGGCAGAATGCACAAGCTGAGGATCGACTCAGGTCCCCTCTACATGCTG
* * * *
3746225 CTATCAATCTCGCTAGCGG
326 CTATCAATCCCACTACCGA
* * * * *
3746244 TCTAATCTTAGACTGGGATTGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
3746309 CAACCCAT
66 CAACCCAT
3746317 GGAAAGAGTG
Statistics
Matches: 354, Mismatches: 57, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
341 269 0.76
342 8 0.02
343 1 0.00
344 76 0.21
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (344 bp):
TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
CAACCCATAAAACAAGCATACGGGCACTCAGCCGGCCAGAGAGGCAGGATACGCAAGCCGAGGAT
CGACACGATCCCCTCTGCATGCTATCGATCCCGCTACGGGTCCTGCTAACACAACCCTCGGTCTG
ATCCGATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGGC
ACATAGCCAGTCGGAGAGGCAGAATGCACAAGCTGAGGATCGACTCAGGTCCCCTCTACATGCTG
CTATCAATCCCACTACCGA
Found at i:3746418 original size:344 final size:341
Alignment explanation
Indices: 3745563--3746457 Score: 856
Period size: 341 Copynumber: 2.6 Consensus size: 341
3745553 GTCCGGTCTG
** * * * ** * * *
3745563 ATCTTAGACTGGGAATGAACACCGTATCCTTAGACTGGGGATGAACTCTATATGCCTAAGACAGC
1 ATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
** ** **** * * * * * *
3745628 CCATAAAACAAGCGTGTGGGCACTCAGC-CGGCTAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
66 CCACGAAATGAGCACACGGGCACTCA-CTCGGCCAGAGAGGTAGAATACGCAAGCAGAGGATCGA
* * * * * * * * * * *
3745692 CCCGGTCCCCTCTGCGTG-TCGTCGATCCCGCTGCGGGTCTTTCTACCACAACCCTCGGTCTGGT
130 CACGATCCCCCCTACATGCT-GTCGATCCTGCTGCGGGTCCTGCTAACGCAACCCTCGGTCTGAT
** * * *
3745756 TTGATGTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCATGAAACGAGCATGCTGGCAC
194 CCGATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGGCAC
3745821 ATAGCCAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGACTCGGTCCCTCTCTACATGCTGTT
259 ATAGCCAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGACTCGGTCCCTCTCTACATGCTGTT
* *
3745886 GATCCCACTACCGATCTG
324 AATCCCACTACCGATCTA
* * *
3745904 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
* * * *
3745969 CCACGAAATGAGCATACGGGCACTCAGTCGGCCAGAGAGGTAGGATACGCAAGCCGAGGATCGAC
66 CCACGAAATGAGCACACGGGCACTCACTCGGCCAGAGAGGTAGAATACGCAAGCAGAGGATCGAC
* * * * *
3746034 ACGATCCCCTCTGCATGCTATCGAT-CTCGCTACGGGTCCTGCTAACGCAACCCTCGGTTTGATC
131 ACGATCCCCCCTACATGCTGTCGATCCT-GCTGCGGGTCCTGCTAACGCAACCCTCGGTCTGATC
** * * * * *
3746098 CGATCTTAGACTGGGAGTGCACTACGTATGCCTTGGTCATCCCAAGAAATGAGCGTGCAGGCACA
195 CGATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGGCACA
* * *
3746163 TAGCCAGTCGGAGAGGCAGAATGCACAAG-CTGAGGATCGACTCAGTTCCC-CTCTGCGTGCTGC
260 TAGCCAGTCGGAGAGGCAGAATGCACAAGTC-GAGGATCGACTC-GGTCCCTCTCTACATGCTG-
* * * *
3746226 TATCAATCTCGCTAGCGGTCTA
322 T-T-AATCCCACTACCGATCTA
*
3746248 ATCTTAGACTGGGATTGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
* ** * * * *
3746313 CCATGGAAA-GAGTGCGCGGGCGCTCAACT-GGCCGGAGAGGTAGAATACGCAAGTCAG-GGATT
66 CCA-CGAAATGAGCACACGGGCACTC-ACTCGGCCAGAGAGGTAGAATACGCAAG-CAGAGGATC
* * * * ** *
3746375 GGC-CCAGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCG
128 GACACGA-TCCCCCCTACATGCTGTCGATCCTGCTGCGGGTCCTGCTAACGCAACCCTCGGTCTG
3746439 ATCC-ATTCTTAGACTGGGA
192 ATCCGA-TCTTAGACTGGGA
3746458 ATGAACTCTG
Statistics
Matches: 461, Mismatches: 79, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
340 2 0.00
341 262 0.57
342 7 0.02
343 4 0.01
344 176 0.38
345 10 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (341 bp):
ATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
CCACGAAATGAGCACACGGGCACTCACTCGGCCAGAGAGGTAGAATACGCAAGCAGAGGATCGAC
ACGATCCCCCCTACATGCTGTCGATCCTGCTGCGGGTCCTGCTAACGCAACCCTCGGTCTGATCC
GATCTTAGACTGGGAGCACACTACATATGCCTAGGTCAACCCAAGAAACGAGCATGCAGGCACAT
AGCCAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGACTCGGTCCCTCTCTACATGCTGTTAA
TCCCACTACCGATCTA
Found at i:3746482 original size:26 final size:25
Alignment explanation
Indices: 3746446--3746497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
3746436 CCGATCCATT
3746446 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGG-ATGAACTTC-GTATG
3746472 CTTAGACTGGGATGAACTTCGTATG
1 CTTAGACTGGGATGAACTTCGTATG
3746497 C
1 C
3746498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTTCGTATG
Found at i:3746495 original size:25 final size:26
Alignment explanation
Indices: 3746446--3746497 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
3746436 CCGATCCATT
3746446 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3746472 CTTAGACTGGG-ATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
3746497 C
1 C
3746498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 13 0.52
26 11 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3746594 original size:195 final size:196
Alignment explanation
Indices: 3746249--3746613 Score: 434
Period size: 195 Copynumber: 1.9 Consensus size: 196
3746239 AGCGGTCTAA
*
3746249 TCTTAGACTGGGATTGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACC
* * * * * * * * *
3746314 CATGGAAAGAGTGCGCGGGCGCTCAACTGGCCGGAGAGGTAGAATACGCAAGTCAGGGATTGGCC
66 CATCGAAAGAGCGCGCAGGAGCTCAACTGGCCAGAGAGGCAGAATACACAAGTCAGGGATCGACC
* *
3746379 CAGTCCCCCCTACGTGCTGTCGATCCTGCTGCT-GGTCCTGCTGTCGCAACCCTCGGTCCGATCC
131 CAGTCCCCCCTACATGCTGTCGATCCCGCTG-TGGGTCCTGCTGTCGCAACCCTCGGTCCGATCC
3746443 AT
195 AT
* * *
3746445 TCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGG-ATGAACTTCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTTC-ATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAAC
* * * * * * *
3746508 CCA-CGAAATGAGCGTGTAGGAGCTC-AGTCGGCTAGAGAGGCAGGATGCACAAGTCGGGGATCG
65 CCATCGAAA-GAGCGCGCAGGAGCTCAACT-GGCCAGAGAGGCAGAATACACAAGTCAGGGATCG
* * *
3746571 ACCCGGTCCCCTCTGCATGCTGTCGATCCCGCTGTGGGTCCTG
128 ACCCAGTCCCCCCTACATGCTGTCGATCCCGCTGTGGGTCCTG
3746614 TTACCTTCAA
Statistics
Matches: 140, Mismatches: 25, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
194 7 0.05
195 100 0.71
196 33 0.24
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
TCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACC
CATCGAAAGAGCGCGCAGGAGCTCAACTGGCCAGAGAGGCAGAATACACAAGTCAGGGATCGACC
CAGTCCCCCCTACATGCTGTCGATCCCGCTGTGGGTCCTGCTGTCGCAACCCTCGGTCCGATCCA
T
Found at i:3746647 original size:196 final size:196
Alignment explanation
Indices: 3746241--3746649 Score: 423
Period size: 195 Copynumber: 2.1 Consensus size: 196
3746231 ATCTCGCTAG
*
3746241 CGGTCTAATCTTAGACTGGGATTGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTA
1 CGGTCTAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTA
* * * * * * *
3746306 AGTCAACCCATGGAAAGAGTGCGCGGGCGCTCAACTGGCCGGAGAGGTAGAATACGCAAGTCAGG
66 AGTCAACCCATCGAAAGAGCGCGCAGGAGCTCAACTGGCCAGAGAGGCAGAATACACAAGTCAGG
* * * * ** *
3746371 GATTGGCCCAGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGGT
131 GATCGACCCAGTCCCCCCTACATGCTGTCGATCCCGCTGCTGGTCCTGCTACCGCAACCCTCGAT
3746436 C
196 C
* * * * * *
3746437 CGATCCATTCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGG-ATGAACTTCGTATGCCT
1 CGGTCTAATCTTAGACTGGGAATGAACTTC-ATATGCTTAGACTGGGAATGAACTCCGTACGCCT
* * * * * *
3746500 AAGTCAACCCA-CGAAATGAGCGTGTAGGAGCTC-AGTCGGCTAGAGAGGCAGGATGCACAAGTC
65 AAGTCAACCCATCGAAA-GAGCGCGCAGGAGCTCAACT-GGCCAGAGAGGCAGAATACACAAGTC
* * * * * *
3746563 GGGGATCGACCCGGTCCCCTCTGCATGCTGTCGATCCCGCTG-TGGGTCCTGTTACCTTCAACCC
128 AGGGATCGACCCAGTCCCCCCTACATGCTGTCGATCCCGCTGCT-GGTCCTGCTACC-GCAACCC
3746627 TCGATC
191 TCGATC
* *
3746633 TGGTCTGATCTTAGACT
1 CGGTCTAATCTTAGACT
3746650 AGGAGCACAC
Statistics
Matches: 170, Mismatches: 38, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
194 7 0.04
195 102 0.60
196 61 0.36
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
CGGTCTAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTA
AGTCAACCCATCGAAAGAGCGCGCAGGAGCTCAACTGGCCAGAGAGGCAGAATACACAAGTCAGG
GATCGACCCAGTCCCCCCTACATGCTGTCGATCCCGCTGCTGGTCCTGCTACCGCAACCCTCGAT
C
Found at i:3753565 original size:26 final size:26
Alignment explanation
Indices: 3753536--3753586 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3753526 GATCCGATCG
3753536 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
*
3753562 TAGACTAGGGATGAACTTCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
3753587 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:3753987 original size:159 final size:158
Alignment explanation
Indices: 3753750--3754276 Score: 466
Period size: 159 Copynumber: 3.2 Consensus size: 158
3753740 GAGCGCACTA
* * * * * *
3753750 TGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCTGGCCGGAAAGGCATAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AACCGACCGGAGAGGCATAATGC
* * *
3753815 GCAAGTCGGGGATCACCTCGGTCCCCCTCTGCGTGTTGTCGGTCCCACTGCCACAACCCTCGATC
65 GCAAGCCGAGGATCACCTCGGTCCCCCTCTGTGTGTTGTCGGTCCCACTGCCACAACCCTCGATC
*
3753880 TGGCTGGGGCTTAGACATGGAATAAACTT
130 TGGCTGGGGCTTAGACATGGAATGAACTT
* * * * *
3753909 TGTATGCCTAAGCCAACCTATGAAATGAGCGTGCGGGCACTCAACCAACCGGAGAGGCAGAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AACCGACCGGAGAGGCATAATGC
* * *
3753974 GCAAGCCGAGGATCAGCC-CGGTCCTCCTCTATGTGCTGTTGTCGACTCCGCTATCGGTCCGATC
65 GCAAGCCGAGGATCA-CCTCGGTCC-CC-CTCTGTG-TGTTGTCG-GTCC-C-A-CTG-CC-A-C
* ** * * * ** *
3754038 TTAGGCTGGGA-ATGAACTCCGTATGCTTAGAC-TGGGAATGAACTC
119 -AACCCT-CGATCTG-GCT--G-GGGCTTAGACAT-GGAATGAACTT
* * * *
3754083 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTAAGCCGACCGGAGAAGCATAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAA-CCGACCGGAGAGGCATAATGC
* ** * * * ** *
3754148 GTAAGCCGAGGATCGGCTCGATCCCCCTCTGTATGCTGTCGGTCCCGTTGCCACAACCCTCGGTC
65 GCAAGCCGAGGATCACCTCGGTCCCCCTCTGTGTGTTGTCGGTCCCACTGCCACAACCCTCGATC
*
3754213 TGGTTGGGGCTTAGACATGGAATGAACTT
130 TGGCTGGGGCTTAGACATGGAATGAACTT
*
3754242 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
3754277 ATCGCTCAGC
Statistics
Matches: 286, Mismatches: 60, Indels: 44
0.73 0.15 0.11
Matches are distributed among these distances:
159 122 0.43
160 6 0.02
161 5 0.02
162 10 0.03
163 8 0.03
164 2 0.01
165 2 0.01
166 4 0.01
167 3 0.01
168 1 0.00
169 2 0.01
170 8 0.03
171 11 0.04
172 5 0.02
173 7 0.02
174 90 0.31
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAACCGACCGGAGAGGCATAATGCG
CAAGCCGAGGATCACCTCGGTCCCCCTCTGTGTGTTGTCGGTCCCACTGCCACAACCCTCGATCT
GGCTGGGGCTTAGACATGGAATGAACTT
Found at i:3754066 original size:26 final size:26
Alignment explanation
Indices: 3754037--3754089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3754027 TCGGTCCGAT
*
3754037 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3754063 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3754089 C
1 C
3754090 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3754460 original size:26 final size:26
Alignment explanation
Indices: 3754379--3754449 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
3754369 CTGATCCGAT
3754379 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
3754405 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
*
3754431 CTTAGACTGGGGATGAACT
1 CTTAGACTGGGAATGAACT
3754450 CCGTATTCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:3754630 original size:26 final size:26
Alignment explanation
Indices: 3754601--3754653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3754591 CCGTTCTGAT
*
3754601 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
3754627 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
3754653 C
1 C
3754654 CTATGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:3754800 original size:196 final size:196
Alignment explanation
Indices: 3754405--3754808 Score: 454
Period size: 196 Copynumber: 2.1 Consensus size: 196
3754395 ACTTTGTATG
* * *
3754405 CTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATTCTTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCC
* * *
3754470 ACAAATCGAGCGTGCAGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGGGGATCGACCT
66 ACAAATCGAGCGTACAGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCC
* * * * * * *
3754535 GGACCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTGCTACTGCAACCCTCAGTCCGTTCTGA
131 AGACCCCCCTACGTGCTACCAATCCCGCTACGGGTCCTGCTACCGCAACCCTCAGTCAGTTCTGA
3754600 T
196 T
* * * *
3754601 CTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTATGTCAATCC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCC
* ** * * * * * *
3754666 ACGAAA-CGAGCGTACGGGCGTTCAATCGGCCAG-AGAGGTAGGATGCGCAAGCCGAGGATCGAC
66 AC-AAATCGAGCGTACAGGCACTC-AGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGAC
* * * * * * **
3754729 CCAGTCCCCTCTACGTGCTATCGATCCCGTTACGGGTCCTGCTACCGCAACCTTTGGTCTAGTTC
129 CCAGACCCCCCTACGTGCTACCAATCCCGCTACGGGTCCTGCTACCGCAACCCTCAGTC-AGTTC
3754794 -GAT
193 TGAT
3754797 CTTAGACTGGGA
1 CTTAGACTGGGA
3754809 GCGCACTATG
Statistics
Matches: 170, Mismatches: 35, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
196 157 0.92
197 13 0.08
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (196 bp):
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCC
ACAAATCGAGCGTACAGGCACTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCC
AGACCCCCCTACGTGCTACCAATCCCGCTACGGGTCCTGCTACCGCAACCCTCAGTCAGTTCTGA
T
Found at i:3756909 original size:26 final size:26
Alignment explanation
Indices: 3756859--3756910 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3756849 CGGTCTAATA
* *
3756859 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
3756885 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
3756911 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:3757060 original size:195 final size:194
Alignment explanation
Indices: 3756688--3757132 Score: 491
Period size: 195 Copynumber: 2.3 Consensus size: 194
3756678 TCCGGTTGGG
* *
3756688 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCACGAAACGAGTGTACGGAAGCTCAGT
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGTGTACGGAAGCTCAGT
* * * * * * * *
3756753 CGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCTTCCTGCGTGCTGTCGATCCT
65 CGGCCAGACAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCTTCCTACGTGCTGCCGATCCC
* * * * * *
3756818 GCTGCTGGTCCTACTGCCGCAACCTTCGATTCGGTCTAATATTAGACTGGGAATGAACT-TCGTA
130 GCTGCGGGTCCTACTACAGCAACCCTCGATTCGGTCCAATATTAGACTGGAAATGAACTCT-GTA
*
3756882 T
194 C
* * * * * * *
3756883 GCTTAGACTGGGGATGAACTCCATATGCCTAGGTCAACCATGAAATGAGTGTGC-GACGCTCAGT
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGTGTACGGAAGCTCAGT
* * *
3756947 CGGCCAGACAGGCAGGATGCGTAAGTCGAGGATCGACCCGATCCCTT-CTACGTGCTGCCGATCC
65 CGGCCAGACAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT-CCTTCCTACGTGCTGCCGATCC
* * * *
3757011 CGCTGCGGGTCCTGCTACAGTAACCCTCGGTTCCGGTCCAATCTTAGACTGGAAATGAACTCTGT
129 CGCTGCGGGTCCTACTACAGCAACCCTCGATT-CGGTCCAATATTAGACTGGAAATGAACTCTGT
3757076 AC
193 AC
* * * *
3757078 GCTTAGACTAGGAATGCACTACGTATGCCTAAGTCAACCCAAGAAACGAGCGTAC
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGTGTAC
3757133 AAGCGCTCAG
Statistics
Matches: 204, Mismatches: 41, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
194 83 0.41
195 107 0.52
196 14 0.07
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (194 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGTGTACGGAAGCTCAGTC
GGCCAGACAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCTTCCTACGTGCTGCCGATCCCG
CTGCGGGTCCTACTACAGCAACCCTCGATTCGGTCCAATATTAGACTGGAAATGAACTCTGTAC
Found at i:3758156 original size:13 final size:13
Alignment explanation
Indices: 3758138--3758162 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3758128 CAATGGCACA
3758138 TGATGGCACATGG
1 TGATGGCACATGG
3758151 TGATGGCACATG
1 TGATGGCACATG
3758163 CATTGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3760304 original size:26 final size:26
Alignment explanation
Indices: 3760268--3760318 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3760258 GATTCGATCG
3760268 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
3760294 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
3760319 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:3760661 original size:291 final size:290
Alignment explanation
Indices: 3760113--3760686 Score: 674
Period size: 291 Copynumber: 2.0 Consensus size: 290
3760103 TCAGTCCGGT
* * * * *
3760113 TGGGGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCGATGAAATGAGCGTGCGGGCGC
1 TGGGGCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGC
* * * * * * *
3760178 TTAGCCAACCGGAGGGGCAAGATGCGCAAGTCAAGGATCGACTCGGTCCCCCTCTCCGTGCTACT
66 TCAGCCAACCAGAGGAGCAAGATGCGCAAGTCAAGAATCGACCCGATCACCCTCT-CGTGCTACT
* * * *
3760243 GCCGATCTCACTGCCGATTCGATCGTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
130 ACCGATCCCACTGCCGATCCGATCGTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
3760308 ACTCCGTATGCCTAAATCAACCCACAAAATGAACGTGTGGGCATTGAGCAGGCCAGAGAGGCATA
195 ACTCCGTACGCCTAAATCAAACCACAAAATGAACGTGCGGGCACTGAGCAGGCCAGAGAGGCATA
3760373 ATGCGCAAGCCGAGGATCGGCCCGGTCCGAC
260 ATGCGCAAGCCGAGGATCGGCCCGGTCCGAC
3760404 TGGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCG
1 TGGGGCTTAGA-ATGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCG
* ** **
3760468 CTCAGTCGGCCAGA-GAG-ATAGAATGCGCAAGTTGAGAATCGACCCGATCACCCTCT-GTACGC
65 CTCAGCCAACCAGAGGAGCA-AG-ATGCGCAAGTCAAGAATCGACCCGATCACCCTCTCGT--GC
* * *
3760530 TACTACCGATCCCACTGCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGTTTAGACTGGGA
126 TACTACCGATCCCACTGCCGATCCGATCGTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGA
* * * *** * ** *
3760595 ATTAACTTCGTACGCCTAAGTCAAACCATGTAATGAGCGTGCGGGTGCTGAGTC-GGTC-GAAGA
191 ATGAACTCCGTACGCCTAAATCAAACCACAAAATGAACGTGCGGGCACTGAG-CAGGCCAG-AGA
* *
3760658 GGCATAATGCGTAAGCCGGGGATCGGCCC
254 GGCATAATGCGCAAGCCGAGGATCGGCCC
3760687 AATCCCCCTC
Statistics
Matches: 236, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
289 3 0.01
290 5 0.02
291 226 0.96
292 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.20
Consensus pattern (290 bp):
TGGGGCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGC
TCAGCCAACCAGAGGAGCAAGATGCGCAAGTCAAGAATCGACCCGATCACCCTCTCGTGCTACTA
CCGATCCCACTGCCGATCCGATCGTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTACGCCTAAATCAAACCACAAAATGAACGTGCGGGCACTGAGCAGGCCAGAGAGGCATAA
TGCGCAAGCCGAGGATCGGCCCGGTCCGAC
Found at i:3761284 original size:26 final size:26
Alignment explanation
Indices: 3761245--3761295 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3761235 AGTTTGATTA
*
3761245 TAGATTTGGAATGAACTCCGTATGCT
1 TAGATTGGGAATGAACTCCGTATGCT
*
3761271 TAGATTGGGGATGAACTCCGTATGC
1 TAGATTGGGAATGAACTCCGTATGC
3761296 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCGTATGCT
Found at i:3762334 original size:26 final size:26
Alignment explanation
Indices: 3762298--3762350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3762288 TCGATCCGAT
3762298 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
3762324 CTTAGACTGGGGATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3762350 C
1 C
3762351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3763906 original size:45 final size:45
Alignment explanation
Indices: 3763857--3763951 Score: 102
Period size: 45 Copynumber: 2.1 Consensus size: 45
3763847 CCCTTTGGTA
** *
3763857 CGGGCACTTACCTCGACTGCCATCGACACAAGTTGGGCC-CTAGTG
1 CGGGCACTTACCTCGACCACCATCGACACAAGAT-GGCCTCTAGTG
** * * *
3763902 CGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCTCTGGTG
1 CGGGCACTTACCTCGACCACCATCGACACAAGATGGCCTCTAGTG
3763947 CGGGC
1 CGGGC
3763952 GATTGCATCG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 4 0.10
45 37 0.90
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (45 bp):
CGGGCACTTACCTCGACCACCATCGACACAAGATGGCCTCTAGTG
Found at i:3763952 original size:45 final size:45
Alignment explanation
Indices: 3763867--3764021 Score: 168
Period size: 45 Copynumber: 3.4 Consensus size: 45
3763857 CGGGCACTTA
** * * *
3763867 CCTCGACTGCCATCGACACAAGTTGGGCCCTAGTGCGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTG
*
3763912 CCTCGACCACCATCGGCACAAGAT-GGCCTCTGGTGCGGGCGATTG
1 CCTCGACCACCATCGGCACAAGATGGGCC-CTGGTGCGGGCGGTTG
* * * * ** *
3763957 CATCGAACACCATCGGCACATGCTGGGCCAAGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTG
*
3764002 CTTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
3764022 TGTCGAGCCC
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 4 0.04
45 84 0.91
46 4 0.04
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTG
Found at i:3765830 original size:90 final size:90
Alignment explanation
Indices: 3765628--3765830 Score: 246
Period size: 90 Copynumber: 2.3 Consensus size: 90
3765618 GTACAGGCAC
* ** * * *
3765628 TTGCCTCGACCGCCATCGGCACAAGGTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATTGGC
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGC
* * *
3765693 ACATGCCGGCCCTTGGGGTGAGCGA
66 ACATGCAGGCCCATGGGGCGAGCGA
* * *
3765718 TTGCCTCGACCACCATCAGCACAAAATGGCCCCTGGTGTGGGTGGTTGCATCGATCACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGC
* * *
3765783 ACATGCTAGG-CCATGGTGCGGGCGG
66 ACATGC-AGGCCCATGGGGCGAGCGA
*
3765808 TTGCCTCGACCACCATTGGCACA
1 TTGCCTCGACCACCATCGGCACA
3765831 TGTTGAGCCC
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 93 0.98
91 2 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAAATGGCCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGC
ACATGCAGGCCCATGGGGCGAGCGA
Found at i:3765831 original size:45 final size:45
Alignment explanation
Indices: 3765628--3765841 Score: 196
Period size: 45 Copynumber: 4.7 Consensus size: 45
3765618 GTACAGGCAC
* * * *
3765628 TTGCCTCGACCGCCATCGGCACAAGGTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * * * * * *
3765673 TTGCCTCGATCACCATTGGCACATGCCGGCCCTTGGGGTGAGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* *** * *
3765718 TTGCCTCGACCACCATCAGCACAAAATGGCCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * *
3765763 TTGCATCGATCACCATCGGCACATGCTAGG-CCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCGG
* *
3765808 TTGCCTCGACCACCATTGGCACATGTTGAGCCCC
1 TTGCCTCGACCACCATCGGCACATGCTG-GCCCC
3765842 AATCGACCCT
Statistics
Matches: 128, Mismatches: 38, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
44 1 0.01
45 123 0.96
46 4 0.03
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
Found at i:3766476 original size:26 final size:26
Alignment explanation
Indices: 3766447--3766499 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3766437 CTGGTTCGAT
*
3766447 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
3766473 CTTAGACTAGGGATGATCTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
3766499 C
1 C
3766500 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:3767223 original size:16 final size:16
Alignment explanation
Indices: 3767198--3767238 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
3767188 ATGTGCGCAC
3767198 ACCCCCAATCACCGGA
1 ACCCCCAATCACCGGA
* *
3767214 ACCCCTAATCGCCGGA
1 ACCCCCAATCACCGGA
3767230 ACCCCCAAT
1 ACCCCCAAT
3767239 GGCACCGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.29, C:0.49, G:0.12, T:0.10
Consensus pattern (16 bp):
ACCCCCAATCACCGGA
Found at i:3767440 original size:45 final size:45
Alignment explanation
Indices: 3767374--3767473 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
3767364 CGACCATCAA
* * *
3767374 TGGCACATGATGGCCCCTGGTGCGGGTGGTTGCATCAAACACCAT
1 TGGCACATGCTGGCCCATGGTGCGGGCGGTTGCATCAAACACCAT
* * * *
3767419 TGGCACATGCTGGGCCATGGTGCGGGCGGTTGCTTCAACCACTAT
1 TGGCACATGCTGGCCCATGGTGCGGGCGGTTGCATCAAACACCAT
3767464 TGGCACATGC
1 TGGCACATGC
3767474 CGAGCCCCGG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (45 bp):
TGGCACATGCTGGCCCATGGTGCGGGCGGTTGCATCAAACACCAT
Found at i:3768072 original size:45 final size:45
Alignment explanation
Indices: 3768023--3768223 Score: 158
Period size: 45 Copynumber: 4.5 Consensus size: 45
3768013 GTACGGGCAC
*
3768023 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCGAGCGG
1 TTGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGAGCGG
* * * * *
3768068 TTGCCTCGATCATCATCGGCACATGC-CGACCCTTGGT-C-AGGGTG
1 TTGCCTCGATCACCATCGGCACAAGCTGGGCCC-TGGTGCGAGCG-G
* * * * *
3768112 ATTGCCTCGACCACCATCGACACAAGATGGTCCCTGGTGCG-GACGA
1 -TTGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGAG-CGG
* * * * * * *
3768158 TTGCATCGAACACCATTGGCACATGCTAGGCCATGGTGCGGGCGG
1 TTGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGAGCGG
* *
3768203 TTGCCTCGACCACCATTGGCA
1 TTGCCTCGATCACCATCGGCA
3768224 TATGTCAAGC
Statistics
Matches: 121, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
43 3 0.02
44 6 0.05
45 104 0.86
46 7 0.06
47 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
TTGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGAGCGG
Found at i:3768104 original size:90 final size:91
Alignment explanation
Indices: 3767979--3768183 Score: 213
Period size: 90 Copynumber: 2.3 Consensus size: 91
3767969 TGATGGCACA
* * * * * *
3767979 TGCATCGACCATCATCGGCATA-GGCTACCCTTTGGT-ACGGG-CACTTGCCTCGATCGCCATCG
1 TGCATCGAACATCATCGGCACATGCCGACCCTTTGGTCA-GGGTCA-TTGCCTCGACCACCATCG
* * *
3768041 GCACAAGCTGGGCCCTGGTGC-GAGCGGT
64 ACACAAGATGGGCCCTGGTGCGGA-CGAT
* * *
3768069 TGCCTCGATCATCATCGGCACATGCCGACCC-TTGGTCAGGGTGATTGCCTCGACCACCATCGAC
1 TGCATCGAACATCATCGGCACATGCCGACCCTTTGGTCAGGGTCATTGCCTCGACCACCATCGAC
*
3768133 ACAAGATGGTCCCTGGTGCGGACGAT
66 ACAAGATGGGCCCTGGTGCGGACGAT
* *
3768159 TGCATCGAACACCATTGGCACATGC
1 TGCATCGAACATCATCGGCACATGC
3768184 TAGGCCATGG
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
90 85 0.89
91 10 0.11
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (91 bp):
TGCATCGAACATCATCGGCACATGCCGACCCTTTGGTCAGGGTCATTGCCTCGACCACCATCGAC
ACAAGATGGGCCCTGGTGCGGACGAT
Found at i:3769022 original size:26 final size:26
Alignment explanation
Indices: 3768986--3769038 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3768976 TCGATCTGAT
3768986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3769012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3769038 C
1 C
3769039 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3769391 original size:26 final size:27
Alignment explanation
Indices: 3769342--3769393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
3769332 GATCTGATCA
**
3769342 TAGACTGAGGAATGAACTTTGTATGCT
1 TAGACTGAGGAATGAACTCCGTATGCT
*
3769369 TAGATTGAGG-ATGAACTCCGTATGC
1 TAGACTGAGGAATGAACTCCGTATGC
3769394 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (27 bp):
TAGACTGAGGAATGAACTCCGTATGCT
Found at i:3770269 original size:11 final size:11
Alignment explanation
Indices: 3770253--3770287 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
3770243 AGGCCTCAAC
3770253 CATCAATGGCA
1 CATCAATGGCA
3770264 CATCAATGGCA
1 CATCAATGGCA
*
3770275 CAT-GATGGCA
1 CATCAATGGCA
3770285 CAT
1 CAT
3770288 GTATCGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (11 bp):
CATCAATGGCA
Found at i:3776984 original size:148 final size:147
Alignment explanation
Indices: 3776716--3777215 Score: 428
Period size: 148 Copynumber: 3.3 Consensus size: 147
3776706 CTGGTTGGGG
* * * * * * * * * **
3776716 TTAGACCAAGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCATACGGGCGCTCAACC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGTC
* * * * * * * *
3776781 GATCGGAGAGACAGGATGCGTAAGCCAAGGATCGGCCCGAT-CCCCTTCTGTGTGCTGTTACCGA
66 GACCGAAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTT-TGCGTGCTGTTACCGA
3776845 TCTCGCTACCGGTCTGATC
130 TC-CGCTACCGGTCTGATC
* * *
3776864 TTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGTG
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGTC
* * * *
3776929 GGCCGAAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTTTGCGTGCTGTCAGTCCC
66 GACCGAAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTTTGCGTGCTGT---TACC
* * * *
3776994 GTTACCACAACCCTCGGTCTGGCTGGGGC
128 GAT-CCGCTA--C-CGGTCT-GAT----C
* ** * *
3777023 TTAGAC-ATGGAATGAACTCTGTATGTTTAAGTCAACCCACGAAACGAGTGTGCATGTGCTCAGT
1 TTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGT
* * * ** * * * **
3777087 CGATCGGAGAGGCAGGATGAGCAAGCCGAGGATTTGCCTGGTCCCCCTCTGCGTGCTGTTGTCGA
65 CGACCGAAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTTTGCGTGCTGTTACCGA
*
3777152 TCCCGCTGCCGGTCTGATC
130 T-CCGCTACCGGTCTGATC
3777171 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
3777216 AAGTGTGCGA
Statistics
Matches: 278, Mismatches: 59, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
148 133 0.48
149 7 0.03
151 8 0.03
152 3 0.01
153 7 0.03
154 7 0.03
155 2 0.01
156 7 0.03
158 1 0.00
159 103 0.37
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (147 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGTC
GACCGAAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTTTGCGTGCTGTTACCGAT
CCGCTACCGGTCTGATC
Found at i:3777291 original size:148 final size:148
Alignment explanation
Indices: 3777022--3777600 Score: 369
Period size: 148 Copynumber: 3.8 Consensus size: 148
3777012 CTGGCTGGGG
* ** * * ** *
3777022 CTTAGACATGGAATGAACTCTGTATGTTTAAGTCAACCCACGAAACGAGTGTGCATGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGCACTCAGC
* * ** *
3777087 C-GATCGGAGAGGCAGGATGAGCAAGCCGAGGATTTGCCTGGTCCCCCTCTGCGTGCTGTTGTCG
66 CAGATCGGAGAGGCAGAATGAGCAAGCAG-GGATCAGCCTGGTCCCCCTTTGCGTGCTGTTGTCG
3777151 ATCCCGCTGCCGGTCTGAT
130 ATCCCGCTGCCGGTCTGAT
*
3777170 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGC-GAGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCAG-GCACTCA
* * * **
3777233 G-CAGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAAGCC-GGTCCCCCTTTATGTGCTGTCG
64 GCCAGATCGGAGAGGCAGAATGAGCAAG-CAGGGATC-AGCCTGGTCCCCCTTTGCGTGCTGT--
* * * *
3777296 GTCTCGCTGCCACAAC-CCTCGGTTCAACTG-T
125 -TGTCGAT-CC-C-GCTGC-CGG-T---CTGAT
* * * * * *
3777327 GGCTTAGACATGTAATGCACTCCGTATGCCTAAGCCAGCCCATC-AAACAAGCGTGTG-A-ACGC
1 --CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACAA--GTGTGCAGGCAC
* * * *
3777389 TCAGCCAG-TCAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCTTTGCGTGCTGC
61 TCAGCCAGATCGGAGAGGCAGAATGAGCAAG-CAGGGATCAGCCTGGTCCCCCTTTGCGTGCTGT
* * **
3777453 TGCCGAACCCGCTGCCGGTCCCAT
125 TGTCGATCCCGCTGCCGGTCTGAT
* * * * *
3777477 CTTAGA-TTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCT-TGCAGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG-TGTGCAGGCACTCA
* * * * * * * *
3777540 GCC-GACCGGAGAGGCATAATGTGTAAGCCGAGGATC-GGCTCGGTCCCCCTCTGCCTGCTGT
64 GCCAGATCGGAGAGGCAGAATGAGCAAGCAG-GGATCAGCCT-GGTCCCCCTTTGCGTGCTGT
3777601 CGGACCCGCT
Statistics
Matches: 331, Mismatches: 65, Indels: 70
0.71 0.14 0.15
Matches are distributed among these distances:
146 3 0.01
147 12 0.04
148 177 0.53
149 6 0.02
150 1 0.00
151 5 0.02
152 3 0.01
153 6 0.02
154 6 0.02
155 3 0.01
156 3 0.01
157 1 0.00
158 6 0.02
159 89 0.27
160 5 0.02
161 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (148 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGCACTCAGC
CAGATCGGAGAGGCAGAATGAGCAAGCAGGGATCAGCCTGGTCCCCCTTTGCGTGCTGTTGTCGA
TCCCGCTGCCGGTCTGAT
Found at i:3777711 original size:307 final size:305
Alignment explanation
Indices: 3776725--3777810 Score: 1011
Period size: 307 Copynumber: 3.5 Consensus size: 305
3776715 GTTAGACCAA
* ** * * * * * * * * *
3776725 GAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCATACGGGCGCTCAACCGATCGGAGA
1 GAATGAACTCTGTATGCCTAAGCCAACCCA-CAAACGAGCGTGCAGGAGCTCAACTGGTCAGAGA
* * * * * * * * * * *
3776790 GACAGGATGCGTAAGCCAAGGATCGGCCCGATCCCCTTCTGTGTGCTGTTACCGATCTCGCTACC
65 GGCAGAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGCCGATCCCGCTGCC
* * * *
3776855 GGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
130 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTGCAGG
** ** * *
3776920 TGCTGAGTGGGCCGAAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTTTGCGTGCT
195 CACTGAGCAGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCGG-CCGGTCCCCCTTTGCGTGCT
* * * * *
3776985 GTCAGTCCCGTTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATG
259 GTCGGTCCCGCTGCCACAACCCTCGGTCTAGCTGTGGCTTAGACATG
** * * * * * * *
3777032 GAATGAACTCTGTATGTTTAAGTCAACCCACGAAACGAGTGTGCATGTGCTC-AGTCGATCGGAG
1 GAATGAACTCTGTATGCCTAAGCCAACCCAC-AAACGAGCGTGCAGGAGCTCAACT-GGTCAGAG
* ** * * * *
3777096 AGGCAGGATGAGCAAGCC-GAGGATTTGCCTGGTCCCCCTCTGCGTGCTGTTGTCGATCCCGCTG
64 AGGCAGAATGAGCAAGCCAG-GGATCGGCCCGATCCCCCTCTGCGTGCTGCTGCCGATCCCGCTG
* * *
3777160 CCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG-TGTGC
128 CCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCT-TGC
* * * * **
3777224 -GAGCACTGAGCAGGTCGGAGAGGCATAATGCGCAAGTC-AGGGATCAAGCCGGTCCCCCTTTAT
192 AG-GCACTGAGCAGGCCGGAGAGGCATAATGTGCAAGCCGA-GGATC-GGCCGGTCCCCCTTTGC
* *
3777287 GTGCTGTCGGTCTCGCTGCCACAACCCTCGGT-TCAACTGTGGCTTAGACATG
254 GTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCT-AGCTGTGGCTTAGACATG
* * * * * * * * **
3777339 TAATGCACTCCGTATGCCTAAGCCAGCCCATCAAACAAGCGTG-TGAACGCTCAGCCAGTCAGAG
1 GAATGAACTCTGTATGCCTAAGCCAACCCA-CAAACGAGCGTGCAGGA-GCTCAACTGGTCAGAG
* * * * *
3777403 AGGCAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCTTTGCGTGCTGCTGCCGAACCCGCTGC
64 AGGCAGAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGCCGATCCCGCTGC
* * * *
3777468 CGGTCCCATCTTAGATTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCTTGCAG
129 CGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTGCAG
* * * * *
3777533 GCACTGAGCCGACCGGAGAGGCATAATGTGTAAGCCGAGGATCGGCTCGGTCCCCCTCTGCCTGC
194 GCACTGAGCAGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCGGC-CGGTCCCCCTTTGCGTGC
* * **
3777598 TGTCGGACCCGCTGCCACAACCCTCGATCTAGCAATGGCTTAGACATG
258 TGTCGGTCCCGCTGCCACAACCCTCGGTCTAGCTGTGGCTTAGACATG
* * * * *
3777646 GAATGAACGCTGTCTGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCAACTGGCCAGAGA
1 GAATGAACTCTGTATGCCTAAGCCAACCCAC-AAACGAGCGTGCAGGAGCTCAACTGGTCAGAGA
* * * * *
3777711 GGCAGAATGCGTAAG-CAGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCTGTC-AGTCCTGCTG
65 GGCAGAATGAGCAAGCCA-GGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGCCGA-TCCCGCTG
* * *
3777774 CTGATCCGATCTTAGACTGGGAATGAACTCCATATGC
128 CCGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
3777811 TTAGACTGGG
Statistics
Matches: 630, Mismatches: 128, Indels: 42
0.79 0.16 0.05
Matches are distributed among these distances:
306 10 0.02
307 611 0.97
308 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (305 bp):
GAATGAACTCTGTATGCCTAAGCCAACCCACAAACGAGCGTGCAGGAGCTCAACTGGTCAGAGAG
GCAGAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGCCGATCCCGCTGCCG
GTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTGCAGGC
ACTGAGCAGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCGGTCCCCCTTTGCGTGCTGT
CGGTCCCGCTGCCACAACCCTCGGTCTAGCTGTGGCTTAGACATG
Found at i:3778157 original size:26 final size:26
Alignment explanation
Indices: 3778127--3778179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3778117 CCAGTTCGAT
3778127 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
3778153 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
3778179 C
1 C
3778180 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:3779059 original size:10 final size:10
Alignment explanation
Indices: 3779044--3779073 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3779034 TCGACCATCA
3779044 ATGGCACATG
1 ATGGCACATG
3779054 ATGGCACATG
1 ATGGCACATG
*
3779064 ATGGCGCATG
1 ATGGCACATG
3779074 GTGATGGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (10 bp):
ATGGCACATG
Found at i:3779775 original size:26 final size:26
Alignment explanation
Indices: 3779739--3779791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3779729 CCGGTCCGAT
3779739 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3779765 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
3779791 C
1 C
3779792 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3786854 original size:26 final size:26
Alignment explanation
Indices: 3786825--3786877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3786815 CCGGTCCAAT
3786825 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3786851 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3786877 C
1 C
3786878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3787770 original size:13 final size:13
Alignment explanation
Indices: 3787752--3787815 Score: 101
Period size: 13 Copynumber: 4.9 Consensus size: 13
3787742 CAATGGCACA
3787752 TGATGGCGCATGG
1 TGATGGCGCATGG
*
3787765 TGATGGCGTATGG
1 TGATGGCGCATGG
*
3787778 TGATGGCACATGG
1 TGATGGCGCATGG
3787791 TGATGGCGCATGG
1 TGATGGCGCATGG
*
3787804 TGATGGCACATG
1 TGATGGCGCATG
3787816 CATCGACCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.19, C:0.14, G:0.42, T:0.25
Consensus pattern (13 bp):
TGATGGCGCATGG
Found at i:3787894 original size:45 final size:45
Alignment explanation
Indices: 3787821--3788029 Score: 152
Period size: 45 Copynumber: 4.6 Consensus size: 45
3787811 ACATGCATCG
* * * * * *
3787821 ACCATCATCGGCACAGGCTGTGCTTTGGTACGGGCACTTGCCTCA
1 ACCACCATCGGCACAAGCTGGGCCTTGGTACAGGCAGTTGCCTCA
* * * *
3787866 ACCACCATCAGCACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTCG
1 ACCACCATCGGCACAAGCTGGGCCTTGGTACAGGCAGTTGCCTCA
* * * * * ** *
3787911 ACCACCATCAGCACAAGAT-GCCCTCTAGTACGGGTGGTTGCATCGA
1 ACCACCATCGGCACAAGCTGGGCCT-TGGTACAGGCAGTTGCCTC-A
* * ** *
3787957 A-CACCATTGGCACATGCTGGGCCAAGGTACAGGCAGTTGCCTCG
1 ACCACCATCGGCACAAGCTGGGCCTTGGTACAGGCAGTTGCCTCA
* * *
3788001 ACCACCATCGGCACATGCTGAGCCATGGT
1 ACCACCATCGGCACAAGCTGGGCCTTGGT
3788030 TGGCCCCCAA
Statistics
Matches: 126, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.04
45 117 0.93
46 4 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (45 bp):
ACCACCATCGGCACAAGCTGGGCCTTGGTACAGGCAGTTGCCTCA
Found at i:3787942 original size:90 final size:90
Alignment explanation
Indices: 3787848--3788015 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 90
3787838 CTGTGCTTTG
* ** * *
3787848 GTACGGGCACTTGCCTC-AACCACCATCAGCACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTCGA
1 GTACGGGCACTTGCATCGAA-CACCATCAGCACAAGCTGGGCCAAGGTACAGGCAGTTGCCTCGA
3787912 CCACCATCAGCACAAGATGCCCTCTA
65 CCACCATCAGCACAAGATGCCCTCTA
*** ** *
3787938 GTACGGGTGGTTGCATCGAACACCATTGGCACATGCTGGGCCAAGGTACAGGCAGTTGCCTCGAC
1 GTACGGGCACTTGCATCGAACACCATCAGCACAAGCTGGGCCAAGGTACAGGCAGTTGCCTCGAC
*
3788003 CACCATCGGCACA
66 CACCATCAGCACA
3788016 TGCTGAGCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 63 0.97
91 2 0.03
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.18
Consensus pattern (90 bp):
GTACGGGCACTTGCATCGAACACCATCAGCACAAGCTGGGCCAAGGTACAGGCAGTTGCCTCGAC
CACCATCAGCACAAGATGCCCTCTA
Found at i:3789879 original size:26 final size:26
Alignment explanation
Indices: 3789843--3789895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3789833 CTGGTCTGAT
*
3789843 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3789869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3789895 C
1 C
3789896 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3792987 original size:870 final size:870
Alignment explanation
Indices: 3789123--3793973 Score: 5954
Period size: 870 Copynumber: 5.5 Consensus size: 870
3789113 CCCACTGCCA
* ***
3789123 GTTC-GATCTTAGACTGGGAATGAACTCCCTATGCCTAAGTTGACCGACGAAACGAGCAGGCGAG
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-G
* * * *
3789187 CGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAG-CATGGATCGATAAGGTGGTAGGT
62 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
3789251 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
3789316 ATGGTCCCTTAAGCCTTCACGAGAAGTTTCACGGCAAGACGACTCGTTTTCCATTTTTCACGATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
3789381 TTCAAAACTTTTTACAGTAC-GGAATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
257 TTTAAAACTTTTTACGGTTCAGG-ATTTTT-TAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
3789445 TGGTAGATGTGATCCTTGTATTTTTGGTGGCATGCACAAAAACATTAAGCTAAATACTCAAAGTG
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
3789510 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
3789575 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * * *
3789640 GGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACAACATGTGCACACA-CCCCCCGGCCC
515 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
** * * * *
3789704 TTCCGATCATCGGAACCCCAATGCCGCTGATCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCC
580 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * *** *
3789769 CGATGAAGAAAAATGCTATACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTC
645 CGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C
* *
3789834 TGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAA
704 ---TC-GATC------------CG-A-TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
3789899 AGTCAACCCACAAAACGAGTGTGTGGGTGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCCAGG
749 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGG
* * * * * *** *
3789964 GATC-GACTGGGTCCCCCTCTACATGTTGCCGATCCTACTATTGTAACCCTCAGTCTG
814 GATCGGTC-GGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGTAACCCTCGGTCTG
* * * *
3790021 G-TCAGTTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGT
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGC---
**
3790085 TGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGGT
59 -GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
3790150 AGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCA
123 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
3790215 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTTTATTTTTCAC
188 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* ** * **
3790280 GATTTTTGAAACTTTTTGGGGTTCAGGATTTTTTTAAATTTTTTCGAAAGG-GTTTTTCACCCCA
253 GATTTTTAAAACTTTTTACGGTTCAGGA-TTTTTTAAATTTTTTCGGAAGGAG-TTTTGGCCCCA
* * * * *
3790344 AACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCTGCTAAAAACTCGA
316 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
* * *
3790409 AGTGAACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTG
381 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
3790474 GCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGTTTTGATGAGGG
446 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
3790539 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCCCT
511 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCC-
* * *
3790604 CGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAAGTTCT-C--C-A-------GCGATG
574 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
** *
3790658 GTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
639 GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
3790723 TCGATCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
704 TCGATCCGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** * * * * *
3790787 CGTACGGGCGTTCAGCCAACCAGAGCGGCGGGATGCCCAAACCGGGGATC-GTAGGGTCCCCTTC
768 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *
3790851 TGCGTGCTACCGATCCTACTGCTGTAACCCTCAGTCCG
833 TGCATGCTACCGATCCTGCTGCCGTAACCCTCGGTCTG
* * *
3790889 G-TCTGATCTTAGACTGGGATTGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
*
3790953 CGGACGGACGGGCAGACACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGG
62 C-G--GG-C-GG--G-CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
3791018 TGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGA-ATGCCAATGCCATTTTTATGGCTTGTAA
119 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAA
*
3791082 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
183 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * **
3791147 TTCACGATTTTCAAAACCTTTTGCGGTTTGGGA-TTTTTAAACTTTTTTCGGAAGG-GATTTTGG
248 TTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAA-TTTTTTCGGAAGGAG-TTTTGG
*
3791210 CCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
311 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
** * *
3791275 CTCGTAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
376 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
3791340 TACTAGCGGCGAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTCAGTTCTCAAGGTTTGAT
441 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * * *
3791405 GAGGGATAGGCGGCCCATAGAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
506 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
3791469 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAAG---T-------T-CTCCGGCG
571 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
* *
3791523 ATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
636 ATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
3791588 CCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAAC
701 CCCTCGATCC-GATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
3791652 GAGCGTGCGGGCGCTCAGTCGGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGACCCC
765 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCC
* * ** *
3791717 CTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTG
830 CTCTGCATGCTACCGATCCTGCTGCCGTAACCCTCGGTCTG
** * * * ** *
3791758 G-TCCAATCTTAGACTGGAAATTAGCTCCGTATGTGTAAGCCAACCGATGAAACGAGCGGGCGGG
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
* ** * *
3791822 CGGGCGGGTGGGCATTACACCGGCCAGAGAGACGGGATGCGCGAGTCGTGGATCGATAGGGTGGT
62 CGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* **
3791887 TGGTGGGTTTAGGCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
123 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
3791952 TACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
188 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
3792017 AATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAA
253 GATTTTTAAAACTTTTTACGGTTCAGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * *
3792082 GCTTGGTAGACGTGACCCTTGTATTTTTTTTGGCATGCACAAAGAAATTCAGCTAAAAAATCAAA
317 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
* *
3792147 GTGTACAAGATTTTGTAACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
**
3792212 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
447 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
3792277 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACCTCATGTGCGCACACCCCCCCGG
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
*
3792342 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
577 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
** *
3792407 CCCCGGTGAAGAAAAATACGATACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCG
642 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
3792472 ATCCGATCCTATCTTAGACTTGGAATGAATTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTG
707 ATCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
3792537 CGGGCACTCAACCGGCCAGAGGGGTGAGATGCGCAAACCGGGGATCGGTCGGGTCCCCCACTGCA
772 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCA
* * * **
3792602 TGCTGCGGATCCTGGTGCCACAACCCTCGGTCTG
837 TGCTACCGATCCTGCTGCCGTAACCCTCGGTCTG
* * * *
3792636 GTTC-GATCTTATACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGG
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * ** *
3792700 CGGGCACTGCATCGGCCAGAGAGACGAGATGCGCAAGCCGCAGATCGATAGGGTGGTAGGTGGTT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** **
3792765 TTAGGAACATCTTCATAAATCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
3792830 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCATGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * *
3792895 AAACTTTTTGCGGTTCGGGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCAGGATTTTTTAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
3792960 GATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
3793025 GATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTC-GAACATTTTAATGGCTACTGGCAGCAAA
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAA
*
3793089 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGG
*
3793153 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCGGCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCC
* * * * * *
3793218 CCGATCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGGCGATGCTTCGGCGATGGTACCTCA
582 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
*** * *
3793283 ACAAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCAGTCCA
647 GTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-
* * *
3793348 GTTTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAG
706 ----GATC-----C---G-AT---C---CTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
3793413 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGA
751 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
* * * * ** *
3793478 TCGATCAGGTCCCCCTCTGCAAGCTACTGATCCTGCAACCGTAACCCTCGGT-TT
816 TCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGTAACCCTCGGTCTG
* * ** *
3793532 GATCTAATCTTAGACTGGGAATGAACTCCACATGCCTAAGCCAACCGACGAAACCAGCGGGCGGG
1 GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * **
3793597 CGGGCACTGCGTCGGCCAGAGAGACGGGATGCTCAAGCTGTGGATCAATATCGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** **
3793662 CTAGGCAC-TCCTTCATATTTTTATGTTTCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTAGGCACAT-CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
3793726 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTG
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * **
3793791 GAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTCAGAAGGAGTTTTCACCCCAAACTTGGTA
260 AAAACTTTTTACGGTTCAGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
3793856 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
3793921 GATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTA
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
3793974 AGTCAACCCA
Statistics
Matches: 3471, Mismatches: 390, Indels: 186
0.86 0.10 0.05
Matches are distributed among these distances:
864 7 0.00
865 194 0.06
866 260 0.07
867 49 0.01
868 294 0.08
869 195 0.06
870 470 0.14
871 371 0.11
872 196 0.06
873 3 0.00
874 9 0.00
875 1 0.00
876 1 0.00
877 2 0.00
878 257 0.07
879 2 0.00
881 4 0.00
885 4 0.00
886 3 0.00
889 2 0.00
890 2 0.00
892 1 0.00
893 2 0.00
895 63 0.02
896 149 0.04
897 376 0.11
898 40 0.01
900 1 0.00
901 2 0.00
902 44 0.01
903 416 0.12
904 8 0.00
905 6 0.00
906 37 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
AAACTTTTTACGGTTCAGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCC
TATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGA
TCCTGCTGCCGTAACCCTCGGTCTG
Found at i:3793384 original size:26 final size:26
Alignment explanation
Indices: 3793355--3793407 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3793345 CCAGTTTGAT
*
3793355 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
3793381 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
3793407 C
1 C
3793408 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:3794842 original size:26 final size:26
Alignment explanation
Indices: 3794806--3794858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3794796 CCAGTCAGAT
*
3794806 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3794832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3794858 C
1 C
3794859 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3795697 original size:26 final size:26
Alignment explanation
Indices: 3795668--3795720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3795658 CCAGTCCGAT
*
3795668 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3795694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3795720 C
1 C
3795721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3796591 original size:26 final size:26
Alignment explanation
Indices: 3796562--3796614 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3796552 CCGATCCGAT
3796562 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3796588 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3796614 C
1 C
3796615 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3797494 original size:26 final size:26
Alignment explanation
Indices: 3797464--3797516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3797454 CCGTTCCAAT
3797464 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3797490 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3797516 C
1 C
3797517 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3797925 original size:903 final size:892
Alignment explanation
Indices: 3795642--3798442 Score: 3752
Period size: 903 Copynumber: 3.1 Consensus size: 892
3795632 TGAAGAAAAA
* * * * *
3795642 TGCCACAACCCTTGATCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
3795707 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCTGGCCAGA-GGTG
65 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGT-
* * * * *
3795771 CGAGATGCACAAGCCGAGGATCGACC-GAGTCCCCCTCTACGTGTTGCCGATCCTGTTGCCACAA
129 AG-GATGCACAAGCCG-GGATCGACCAG-GTCCCCCTCTACATGCTGCCGATCCTGCTGCCGCAA
** * * ** * *
3795835 CATTCCATTTGGTCTGATCTTAGACTGGGAATGAACTTGGTATGCCTAAGCTAACCGACCAAACG
191 CCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * *
3795900 AC-CGTGCGGGCAGGCGGGCACTACGCAGGCCAAAGAGTCGAGATGCGCAAGCCGTGGATCGATA
256 ACGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
3795964 GGGTGGTC-GGT-GGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATGGCTTG
321 GGGTGG-CAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
3796027 TAAATTCAAACAATGGT--C-----CCTT-A-TGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
385 TAAATTCATACAATGGTCCCTTAAGCCTTCACTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* * * *
3796083 TTTTTATGATATTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTT-GGAAGGAGTTTTG
450 TTTTCA-CA-ATTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
3796147 GCCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAA
513 G-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
3796212 AAGTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATG
577 AACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * ** *
3796277 GCTATTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTACGAGTTCTCAAGGTTTG
642 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
3796342 ATGAGGGATAGGTGGCCAATATAAGGGCCATGTACCAGCACCCATCACACATCATGTGCGCAATC
707 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC-A--
* *
3796407 CCCCACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGATTCTCCGACGATGC
769 ---CACCCCC-CGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * *
3796472 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTAC
830 TCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
3796536 TGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
3796601 TGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTACGGGCTCTCAGCCGGTC-GAGGGGC
65 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA-GGG-
* * * *
3796665 CA-GATGCATAAGCCGGGGATCGGCCAGGTCCCCCTCCACATGCTGCCGATCCTGCTGCCGCAAC
128 TAGGATGCACAAGCC-GGGATCGACCAGGTCCCCCTCTACATGCTGCCGATCCTGCTGCCGCAAC
** ** * * *
3796729 CCTATGTCTGGTCCAATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGA
192 CCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
3796794 TCGGGCGGGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
257 -C--GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
3796859 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTT
319 TAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
3796924 CTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGACGACTCATTTTCT
384 GTAAATTCATACAATGGTCCCTTAAGCCTTCAC-TGAAGTTTCATGGCAAGACGACTCATTTTCT
* * *
3796989 ATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
448 ATTTTTCA-CA-ATTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
3797054 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
511 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * **
3797119 AAACTCAAAGTGTACAAGATTTTGTTACCATTTGAACGAAGTGTCCCCATTTCAGACACTTTAAT
576 AAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
3797184 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTG
641 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* **
3797249 GATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA
706 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
** **
3797314 CCCCCCGACCCCCCCGATCGTCGGAACGTCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAG
771 CCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-G
*
3797379 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGCATGTGC
834 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
3797438 TGCCGCAACCCTTGGTCCGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
3797503 TGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGACGGGT
65 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA-GGGT
* * * * * * *
3797568 AGGATGCGCAATCCAGGGATCGACCAGGTCCCCCTCTGCATGCTACCAATCCTGCTGCTGTAACC
129 AGGATGCACAAGCC-GGGATCGACCAGGTCCCCCTCTACATGCTGCCGATCCTGCTGCCGCAACC
* * *
3797633 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAG
193 CTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
* * * *
3797698 CGAACGGGCGGGCGGGCGGGCACTACGCCTGCCAGAGAGACGGGATACGCAAGCTGTGGATTGAT
257 CG--CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
3797763 AGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTG
320 AGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
3797828 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTATTTTCTA
385 TAAATTCATACAATGGTCCCTTAAGCCTTCAC-TGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * * *
3797893 TTTTTCACAACTTTCAAAAGTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
449 TTTTTCACAA-TTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
3797958 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGACATGCCCAAAAAAATTCAGCTAAA
512 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
3798023 AACTCGAAGTGTA-TAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAAACACATTAATG
577 AACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
3798087 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-CTTTTAAGGGGGTGTGAGTTCTCGAGGTTT
642 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
3798151 CATGAGGGATA-GGGGACAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA
706 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
** ** *
3798215 CCCCCCCGGGCCTTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGG
771 -CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-G
* * * *
3798280 TGATGGTGCCCAGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGC
834 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * *
3798339 TACCGCAACCATCGATCCGGTCCAATCTTAGATTGGGAATGAATTTCGTTTGCTTAGATTGGGAA
1 TGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
** * * *
3798404 CAAACTCCGTATGTCTAAGTCAACCCATGAAACAAGCGT
65 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
3798443 TGAAAAAGTA
Statistics
Matches: 1682, Mismatches: 191, Indels: 61
0.87 0.10 0.03
Matches are distributed among these distances:
893 104 0.06
894 113 0.07
895 2 0.00
897 63 0.04
898 65 0.04
900 1 0.00
901 237 0.14
902 350 0.21
903 417 0.25
905 4 0.00
906 1 0.00
907 1 0.00
908 310 0.18
909 14 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGCCGCAACCCTCGATCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGTAG
GATGCACAAGCCGGGATCGACCAGGTCCCCCTCTACATGCTGCCGATCCTGCTGCCGCAACCCTC
CGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACGCG
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
CAATTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCC
CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCC
GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
Found at i:3798784 original size:26 final size:26
Alignment explanation
Indices: 3798746--3798797 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3798736 CCGGTCTGAT
*
3798746 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
3798772 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3798798 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3798793 original size:381 final size:383
Alignment explanation
Indices: 3798056--3798811 Score: 977
Period size: 381 Copynumber: 2.0 Consensus size: 383
3798046 CACCATTTGA
*
3798056 AAAAAGTGTCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTATCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
3798121 CTTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGACAATATAAGGGCCAAGTAC
66 CTTTTAAAGGGGTGTGAGTTCTCGAGGTTTCATGAGGGACAGGGGACAATATAAGGGACAAATAC
* ** * *
3798186 CAGCACCCATCACACATCATGTGTGCACACCCCCCCGGGCCTTCGATCGTCGGAACCCCAATGCC
131 CAGCACACATCACACATCATGTGCACACACCCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCC
* *
3798251 GCCAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCAGGCGAAGAAAAATACGGCACCAGC
196 GCCAGTCAGGTTCTCC-ACGA-G--CC-G-AATGGTGCCCAGACGAAGAAAAATACGGCACCAGC
* * * *
3798316 ACATGCCCGAGCCCAACATGTGCTACCGCAACCATCGATCCGGTCCAATCTTAGATTGGGAATGA
255 AAATGCCCGAGCCCAACATGTGCTACAGCAACCATCGATCCGGTCCAATCTTAGACTAGGAATGA
* * *
3798381 ATTTCGTTTGCTTAGATTGGGAACAAACTCCGTATGTCTAAGTCAACCCATGAAACAAGCGTTG
320 ACTTCGTATGCTTAGATTGGGAACAAACTCCGTATGGCTAAGTCAACCCATGAAACAAGCGTTG
** * * *
3798445 AAAAAGTATCCCCATTTCGGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG-
1 AAAAAGTATCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3798509 CTCTTTAAATGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGCCCAATATAAGGGACAAAT
66 CT-TTTAAAGGGGTGTGAGTTCTCGAGGTTTCATGAGGGACAGGGG-ACAATATAAGGGACAAAT
* *
3798574 ACCAGCACACATCGCACATCATGTGCACACACCCCCTTCCTGCCCCTCGATCGTCGGAACCCCAA
129 ACCAGCACACATCACACATCATGTGCACACACCCCC--CCGGCCCCTCGATCGTCGGAACCCCAA
* * * **
3798639 TGCCGTCGGTCAGGTTCT-C-CG-G-C-AATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAA
192 TGCCGCCAGTCAGGTTCTCCACGAGCCGAATGGTGCCCAGACGAAGAAAAATACGGCACCAGCAA
* * ** * **
3798699 ATGCTCGAGCCCAGCATGTGCTGTAGCAACTC-TCGGTCCGGTCTGATCTTAGACTAGGAATGAA
257 ATGCCCGAGCCCAACATGTGCTACAGCAAC-CATCGATCCGGTCCAATCTTAGACTAGGAATGAA
**
3798763 CTTCGTATGCTTAGATTGGGAATGAACTCCGTATGGCTAAGTCAACCCA
321 CTTCGTATGCTTAGATTGGGAACAAACTCCGTATGGCTAAGTCAACCCA
3798812 CAAAATGAAC
Statistics
Matches: 319, Mismatches: 43, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
381 127 0.40
382 1 0.00
384 1 0.00
387 1 0.00
388 2 0.01
389 99 0.31
390 47 0.15
391 1 0.00
392 40 0.13
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (383 bp):
AAAAAGTATCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
CTTTTAAAGGGGTGTGAGTTCTCGAGGTTTCATGAGGGACAGGGGACAATATAAGGGACAAATAC
CAGCACACATCACACATCATGTGCACACACCCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCC
GCCAGTCAGGTTCTCCACGAGCCGAATGGTGCCCAGACGAAGAAAAATACGGCACCAGCAAATGC
CCGAGCCCAACATGTGCTACAGCAACCATCGATCCGGTCCAATCTTAGACTAGGAATGAACTTCG
TATGCTTAGATTGGGAACAAACTCCGTATGGCTAAGTCAACCCATGAAACAAGCGTTG
Found at i:3799679 original size:26 final size:26
Alignment explanation
Indices: 3799650--3799702 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3799640 CCAATCCGAT
3799650 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
3799676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
3799702 C
1 C
3799703 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:3800430 original size:903 final size:893
Alignment explanation
Indices: 3798445--3814294 Score: 17891
Period size: 903 Copynumber: 17.7 Consensus size: 893
3798435 ACAAGCGTTG
* * * *
3798445 AAAAAGTATCCCCATTTCGGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
** * * * *
3798510 TCTTTAAATGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGCCCAATATAAGGGACAAATA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
3798575 CCAGCACACATCGCACATCATGTGCACACACCCCCTTCCTGCCCCTCGATCGTCGGAACCCCAAT
131 CCAGCACCCATCACACATCATGTGCGCACACCCCC--CCGGCCCCCCGATCGTCGGAACCCCAAT
* * * *
3798640 GCCGTCGGTCAGGTTCTCCG-GC-AATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATGC
194 GCCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* ** * * * *
3798703 TCGAGCCCAGCATGTGCTGTAGCAACTCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCG
259 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
3798768 TATGCTTAGATTGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAATGAACGTGCGGGCGCT
324 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** * * * **
3798833 CAACCGGCCAGAGGGGCGGGATGCATAAGTCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCG
389 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCG
* * * * ** * **
3798898 ATCCTGTTGCCCCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAG
454 ATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
3798963 CCAACCAACGAAACGAGCGGGCGGGTGGGCGTGCGGGCACTACGTCGCCCAAAGAGACGGGATGC
519 CCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * * * * **
3799028 GCAAGCCGTGGATCAATAAGGTGCTAGCTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAAT
583 GCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
3799093 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
648 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** *
3799158 AGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATT
713 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
3799223 TTTTTGAAACG-GTTTTGG-TCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
778 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
3799286 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
843 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3799337 AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGT
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3799402 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGAGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * * *
3799467 CCAGCACCCATTGCACATCATGTGGGCACACCACCCTCCGGCCCGCTCGATCGCCGAAACCCCAA
131 CCAGCACCCATCACACATCATGTGCGCACACC-CCC-CCGGCCC-CCCGATCGTCGGAACCCCAA
* ** *
3799532 TGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGGCAC
193 TGCCGCCGGTCAGGTTCTC---CGA-G---CG--GATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * ** *
3799597 CAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGCA
249 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
3799662 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
314 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
3799727 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGGT-CCCCTTTG
379 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
* ** * * *
3799791 TGTGCTATTGATCCTGCTACTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
444 CGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * ** *
3799856 TATGCCTAAGCCAATCGATGAAACGAGCGGGCGGACAGGCGGGCGGGCACTACACCGACCAGAGA
509 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGA
*
3799921 GACGGGATGCGCAAGCAGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
573 GACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
3799986 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAG
638 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * *
3800051 TTTCATGGCAAGATTACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATT
703 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* **
3800116 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTCAT
768 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* **
3800181 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGATGATTTGA
833 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
3800242 AAAACGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3800307 TCCTTAAGGGAGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * ** * * ** * *
3800372 CCGGAACCCATCATGCATCGTGTGTGCACACCCCCCCAACCCCCCGGATCATCGAAACCCCAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATG
* * ** * *
3800437 TCGTCGGTCAGGTTCTCCG-G-GGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATTCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
3800500 CAAGCCCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGAAATGAACTTCAT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
3800565 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTC
325 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * **
3800630 AGCCGGCCAGAGGGGTGGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCAT-TGTGCAATTG
390 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-TGCGTGCTACCG
* * * * * *
3800694 ATCCTGCTGCTGCAGCCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAG
454 ATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
3800759 CCAACCGACGAAACGAGCAGGCGGACGGGCGGGCAGGCACTACGTCGACCAGAGAGACGGGATGC
519 CCAACCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
3800824 GCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTTTGTGTGCCATT
583 GCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
3800889 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
648 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
3800954 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
713 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
3801019 TTTTCGGAAGGTA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTCGTTGGCATGCA
778 TTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * **
3801083 CAAAAAAATTTC-GCTAAAAACTTGAAGCGTACAAGATTTTGTGATGATTTGA
842 CAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3801135 AAAACGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3801200 TCTTTAAGGGAGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** * * *
3801265 CCGGCACCCATCATGCATCATGTGTGCACA-CCCCCCGACCCCCCCGATCGTCGAAACCCCAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATG
* * ** *
3801329 TCACCGGTCAGGTTCTCCG-G-GGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
3801392 CGAGCCCAGCATGTGCTGTCGCAACTCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTTCAT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
3801457 ATGCTTGGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTC
325 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
3801522 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCATCTACGTGCTATTGA
390 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGA
* * * * *
3801587 TCCTACCATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
455 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
3801652 CAACCGATGAAACGAGC---AGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAAACGGGATGCGT
520 CAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
** * * * * *
3801714 AAGCCTTGGATCGATAGGGTGGTACGTGGGTTTTGTCACATCTTCATATTGCTATGTGCCAATGC
585 AAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* * *
3801779 CATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCACGGCAAG
650 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
3801844 ATGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
715 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
3801909 TTCAGAAGGAGTTTTAGCCCCAAACTTAGTATATGTGATCCTTGTATTTTTTTTGGCATGCACAA
780 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
3801974 AAAATTTCAGCTAAAAAATCCAAGTGTACAAGATTTTGTGACCATTTGA
845 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
3802023 AAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3802088 TCTTTAAAGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
3802153 CCAGCACCCATCACACATCATGTGTGTACACCCCCCTGGCACCCCCGATCGTCGGAACCCCAACG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATG
* * * * *
3802218 CCGCCGGTTAGGTTCTCCGA-C-GATGGTGCCCCGGCAAAGAAAAATACAGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * ** ** *
3802281 TGAGCCCAGCATGTGCTGCCGTAAGCCTCAATCTAGTCCGATCTTAGACTGGGAATGAACTTCGT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
3802346 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGTGTGCGGGCGCTC
325 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * ** * * * *
3802411 AGCCAGCCAGAGGGGCAAGATGCGCAAGCAGGGGATCGATTGGGTCCCGC-CTGCATGTTGCCGA
390 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGA
* ** * * * * * *
3802475 TCCTGCTGCCGCAACCCTTAGTTTGGACTGATCTTAGACTGGGAATGAACTCAGTATGCCAAACC
455 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
3802540 CAACTGACGAAACGA-----------GCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCAC
520 CAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
3802594 AAGCCGTGGATCGATAGGATGGTAGGTGGGATTAGGCACATCTTCATATTTCTATGTGCCAATGC
585 AAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
*
3802659 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAG
650 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
3802724 ACAACTCGTTTACTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTTAAATTTT
715 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** * * * *
3802789 TTCAGAAGGTTTTTTGGCCCCAAACTTGGTATACGTGATCCTTGAATTTTTTTTCGCATGCAC-A
780 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
3802853 AAAAATTGAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACTATTTGAA
845 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-A
*
3802903 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3802968 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** * * * *
3803033 CTAGCACCCATCTTATATCATGTGCGCACA-CCCCCCGGCCCCCCGATCATCGGAACCCTAGTGC
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * *
3803097 CGTCGATCAGGTTCTTCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
196 CGCCGGTCAGGTTC-TC--CGA-G---CG--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * * *
3803162 CACATGCCAGAGCCCAGCATGTG-T-CATCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAA
252 CACATGCCCGAGCCCAGCATGTGCTGC--CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * *
3803225 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTGTGGCTAAGTCAACCCACGAAACGAGCGT
315 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
3803290 GCGGGCGGTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGT
380 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
** * ** *
3803355 GTGCTATTGATCCTACTACCGCAACCCTCGGTCCAGTCCGATATTAGACTGGGAATGAACTCCGT
445 GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
3803420 ATGCCTAAGCCGACCGATGAAACGAGCAGGCAGGCGGGCGGGCGAGCACTACGTCGGCTAGAGAG
510 ATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
** *
3803485 ACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAATCAAATCTTCATATTTC-G
574 ACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * * *
3803549 ATGCGCCAATGCCATTTTTATGGCGTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTAAAG
639 -TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
*
3803614 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATT
703 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* ** * * * **
3803679 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCAGCAAACTAGGTAGACATGATCCTTGTATATTCAT
768 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
3803744 TGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGA
833 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3803805 AAAAAGTGTCCTCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* ** *
3803870 TTTTTAAGGGACTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
3803935 CCAGCACCCATCACACATCATGTGTGTACACCCCCCTGGCACCCCCGATCGTCGGAACCCCAACG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATG
* * * * *
3804000 CCGCCGGTTAGGTTCTCCGA-C-GATGGTGCCCCGGCAAAGAAAAATACAGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * ** ** *
3804063 TGAGCCCAGCATGTGCTGCCGTAAGCCTCAATCTAGTCTGATCTTAGACTGGGAATGAACTCCGT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
3804128 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACTACCGTGCGGGTGCTT
325 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * * *
3804193 AGCCGGCAAGAGGGGCAGGATGCGCAAGTCGGGGATCGACTAGGTCCCCCTCTACATGCTGCCGA
390 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGA
* * * *
3804258 TCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGTACTCCGTATGCCTAAGC
455 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * *
3804323 CGACCCGATGAAACGAGCGGGCAGGCGGGCGGGCAAGCACTACGTCGGCTAGAGTGACGGGATGC
520 C-AACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
3804388 GCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTATGCGCCAAT
583 GCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
*
3804453 GCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
648 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
3804518 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGAGTTTTTAAAATT
713 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * **
3804583 TTTTCGAAAGGAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGTATATTCATTGGCATGCAC
778 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
3804648 AAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
843 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
3804699 AAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3804763 TTTTTAAGGGAGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * *
3804828 CCAGCACCCATCATGCATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCACAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATG
* * ** *
3804893 TCGCCGGTCAGGTTCTCCG-G-GGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
3804956 CGAGCCCAGTATGTGCTGCCACAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
3805021 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAATCAACCCATGAAACTACCGTGCGGGCGCTC
325 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
3805086 AGCCGGCCAGAGGGGTGGGATGCTCAAGTCGGGGATCGGCCAGGTCCCCCT-TGCGTGCTGCCGA
390 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGA
* * * *
3805150 TCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGTACTCCGTATGCCTAAGC
455 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
3805215 CAATCGACGAAACGAGC---AGGCGGGCGGGCAGGCACAATGTCGGCCAGAGAAACGGGATGCGC
520 CAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
3805277 AAGCCA-TGGATCGATAGGGTGGTACGTGGGTTTTGGCACATCTTCATATTTCTGTATGCCAATA
585 AAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
* *
3805341 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCAA
649 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** **
3805406 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCCAGATTTTTTAAAATTT
714 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* ** * *
3805471 TTTCAGAAGGAGTTTTCACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACA
779 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
3805536 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
844 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
3805586 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* **
3805651 TCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGG-TAGGGGGCCAATATAACAGCCAAGT
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGT
* * **
3805715 ACCAGCACCCATCATAGATCATGTGCGCACA--CCCCCGGCCCCCCGATCGTCGGAACCCCAAAA
130 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
* * * * * *
3805778 TCGACGATTAGGTTCTCCG-G-GGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
3805841 CTAACCCAGCATGTGCTGCTGCAACCCTCGG-CCGGGTCTGGTCTTAGGCTGGGAATGAACTCCG
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * ** ** * *** *
3805905 CACGGTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCG-GTCCTGC-TACCATAACC
324 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GC-GGGCG
* *** ** * * * ** *
3805968 CTCGGTCCGGTTTGATCTTAGACTGGGAAT--G-AACTCCGTATGCTTCGACTGGGAATAAACCC
387 CTCAG-CCGGCCAGA---GGGGC-GGG-ATGCGCAA-GCCG--GGGATCGACCGGG--T---CCC
* * * * * * *** **
3806030 CGTGTGCCTAAGTTAACCCACGAAATGAACATGCGGGTGCTCAGCCAACCAGAGG---GG-CAAA
438 CCTCTGCGT--GCT-A--C-CG--AT---CCTGC---TAC-C-G-CAACCCTCGGTCTGGTC-CG
** * * * * * *
3806091 ATGCGCAAGCCAGGG-ATCAGACGGGTCCCCATTTACGTG-CT-A-CCAATCCTGCTGCTGCAAC
485 AT-C-TTAGACTGGGAATGA-AC---T--CC--GTA--TGCCTAAGCCAA-CC-G--AC-G-AAA
* ** ** * * * ** * **
3806152 CGTTG-GTTCGGTCTGATCTGAGACTGGGAATGAACTCCGTTTGCCTA-AGCTA-AC-CGATAAA
532 CG-AGCGGGCGG-C-GGGC-G-GGC--GG---GCACTACGTCGGCC-AGAG--AGACGGGAT-GC
* * * ** *** *** * * ** * * * * *
3806213 ACGAGC-GGGCGGGCGGGCGGGCACTACGTTGG-CCAGACAGACGGGATGTGCA-A--GCCGTG-
583 GCAAGCAGTG-GATCGATAGGGTGGTAGGTGGGTTTAGGC--AC---ATCTTCATATTTCTGTGT
* * *** ** * * * *
3806272 GATCGATG-GGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTA-CGTGCCATT--GCCAT
642 G-CCAATGCCATTTTTA--TGGCTTGTA---A-A--TTCATA---CAATGGT-CCCTTAAGCC--
* * * * * *
3806332 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACG
692 -TTCA---CGTG-AAGTT--T-C-ATGG---C--AAGAC--GAC-T--CGTTT--T-------C-
* ** * ** *
3806397 AATCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTT
728 TAT--TTTTC-A-----C--GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * ** *
3806462 GAAAAGAGTTTTTGCCCGAAACTTTTTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
783 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
3806527 AATTCAGCTAACAACTCGAAGTGTACAAGATTTTGTGGCCATTTGA
848 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
3806573 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATGTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3806638 TCTTTAAGGGGGAGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * *
3806703 CCAGCACCCATTGCACATCATGTGCACACTA-CCCCCCGACCCCCCCGATCGCCGGAACCCCAAT
131 CCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAAT
* * * *
3806767 GCTGTCGGTCAGGTTCTCCGA-C-GATGGTGCCCCGACGAAGAAAAATACGGCA-TAGCACATGC
194 GCCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
3806829 CCGAGCCCAGCAAGTGCTACCGCAAACCTCGGTCCGGACCGATCTTAGACTGGGAATGAACTCCA
259 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
3806894 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCT
324 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * ** * * ***
3806959 CAGCCGGCCAGAGGGGCGGGATGTACAAGTCGGGGATCGGTCGGGTCCTCCTCTGCATGCTGTAG
389 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCG
* ** ** * * * * * * *
3807024 ATCCTGTTGTCGTTACCCTCAGTCCGGTCTGGTCTTAGACTGGGAATGACCTCCATATGCCTAGG
454 ATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
3807089 CCAACCGACGAAATGAGCGGACGGGCGGGCGGGCGGGCGGTCACTATGTCTGCAAGAGAGACGGG
519 CCAACCGACGAAACGA---G-CGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
3807154 ATGCGCAAGTC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
579 ATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
*
3807218 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
643 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
3807283 CGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAATTTTTTA
708 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
** *
3807348 AAATTTTTTTC-GAAGGTTTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
773 AAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
3807412 ATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAGGATTTTGTGACGATTTGA
837 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3807469 ATAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3807534 TCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATGAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
3807599 CCAGCACCCATCACACATTACGTGCGCACTGCCCCCCCGGCCCCCCCGATCGTGGGAACCCCAAT
131 CCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAAT
* *
3807664 GCCGTCGGTCATGTTCTCCG-GC-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
194 GCCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
*
3807727 CTGAGCCCAGCATGTGCTGCCGCAACCCT---T---G---G-TC-----C--GG--T---CT--G
259 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
3807768 -AT-CTTAGGCTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCT
324 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * * **
3807831 CAGCCGACCTG-GGGGCGGGATGCACAAGCCGGGGATCGGCTGGGTCCACCTTTACGTGCTGTCG
389 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCG
* * * * *
3807895 ATCCTACTGCCGCAACCCTCGGTCCGGTCCGTTCTTAGATTGGGAATGAACTCCGTATGCCTAAG
454 ATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * ** *
3807960 CCAACCGACGAAAC-A--AGTTGGCGGGCGGGCGGGCACCACAACGACCAGAGAGACGGGATGCG
519 CCAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * *
3808022 CAAGTC-GTGGATCGATAGTGTGGTAGGTGGGTTTCA-GCACATCCTCATATTTCTATGTGCCAA
584 CAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGTGTGCCAA
* * *
3808085 TGCCATTTTTATGGCTTGTAAATTCATACAGTCGTCCCTTAAGACTTCACGTGAAGTTTCATGGC
647 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * **
3808150 AAGACGACTCATTTT-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAT
712 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
3808214 TTTTTCGGAAGGAGTTTTGG-------CTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
777 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
3808272 TAAAAAAATTCAGCTAGAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
842 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** *
3808324 AAAAAGTGTTACCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3808389 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATGAGGGCCAACTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
3808454 CCAGCACCCGTCACACATTATGTGCGCATAGCCCCCCCCGGCCCCCCGATCGTCGGAACCCCAAA
131 CCAGCACCCATCACACATCATGTGCGCACA--CCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * * * *
3808519 GCCACCGGTCAAGTTCTCCG-GC-GATGGTGCCCCGACAAAGAAAAATGCAGCACTAGCACATGC
194 GCCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * *
3808582 CCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCG
259 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * **
3808647 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAACGAGCGTGCAAGCGCT
324 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** *
3808712 CAGTCGGCCAAAGGGGTGGGATGCGCAAGCTGGGGATC-AGCCAAGTCCCCCTCT--ATG-T---
389 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTACC
* * * *
3808770 G---CTGCT---GCAACCCTCGGTCCGGTGCGATCTTAGCCTAGGAATGAACTCCGTATGCCTAA
453 GATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
3808829 GCCAACCGACGAAACGAGCGGGCAGGCGGACGGGCAGGCACTATGCCAGCCAGAGAGATGAGATG
518 GCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * **
3808894 CGCAAGCCA-TGGATCGATAGTGTGGTAGGTGGGTTTAGACACATCTTCAGGTTTCTGTGTGCCA
582 CGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
* *
3808958 ATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGG
646 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
3809023 CAAGACGACTCGTTTTCTATTTTGCACGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTTAAA
711 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * *
3809088 TTTTTTTGGAAGGCGTTTT-GTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGT
776 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
3809152 GCAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGA
841 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
3809205 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGA
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3809270 TCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** ** * * **** * *
3809335 CCAGCACCCATCGCACCCCCCGAT-CGCCAAAACCCTAATG-CCGCCG---GTC---A----AGT
131 CCAGCACCCATCACACATCATG-TGCG-CACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * * * * * * *
3809388 -TCTCCGG-C-GATGCTCCGA-C-GATGGTGTCCTGACGAAGAAAAATGCAGCACCAGCAAATGC
194 GCCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * * * *
3809448 CCGAGCCAAGCATGTGCTGTCGTAACCCTCAGTCCGGT-CGAATCATAGACTGGAAATAAACTTC
259 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG-ATCTTAGACTGGGAATGAACTCC
* *
3809512 GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
323 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * * *
3809577 TCAACTGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCAGGT-CCCCTTTGGCGTGTTGC
388 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-GCGTGCTAC
* * * * *
3809641 TGATCATACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTA
452 CGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
3809706 AGCCAACGGATG-AACGAACGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
517 AGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* ** * * ***
3809770 GTGCAAG-ACGTACATCGATAGGGTGGTAGGTGGGTTTGGGTACATCTTCATATTTCTACATGCC
581 GCGCAAGCA-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
* * *
3809834 AATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCCTCACGTGAAGTTTCATG
645 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** *
3809899 GCAAGACGACTCGTTTTCTATTTTTCACCA-TTTTCAAAATTTTTGTGGTTCGAGATTTTTTAAA
710 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
3809963 ATTTTTTCAGATGGAATTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATG
775 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * * *
3810028 CATAAAAGAATTTAGCTAAAAACTTGAAGTGTA-TAGATTTTGTGACCCTTTGA
840 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3810081 AAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
3810146 TCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
3810211 CCAGCACCCATCGCACATCATGTTCGCACACCCCCTCCGGCCCCTCGATTGCCGGAACCCCAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGAACCCCAATG
* *
3810276 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGCCACCA
195 CCGCCGGTCAGGTTCT-C--CGA-G---C-G-GATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * ** *
3810341 GCACATGCCCGAGCCCAGCATGTGATGTCGTAACCCTCGGTCTGGTCTAATCTTAGAATGGGAAT
251 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * **
3810406 GAACTCGGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAATGTG
316 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * ** *
3810471 CGGGCGCTCAGCCAGCCAGAGAGGCGAGATGCGCAAGCCAGGGATTGGTCGGGTCCCCCTCTCCG
381 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* ** ** * *
3810536 TGCT-CTGATCCTGCTATTGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
446 TGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
3810600 TGCCTAAGCCAACCGACGAAACGA-------ACGGGTGGGCGGGCACTACGCCTGCCAAAGAGAC
511 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* * *
3810658 AGGATGCGCAAGCCGTGGATCGATTAGGG-GGTAGGTGGGTTTAGGCACATCTTGATATTTCT-T
576 GGGATGCGCAAGCAGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
* * *
3810721 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACATGAAGT
640 -GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
3810786 TTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTT
704 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* *
3810851 TTTCAAAATTTTTTC-GAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
769 TTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
3810915 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
833 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
3810976 AAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAACAAACCTGTAAAATCTTAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
3811041 TCTTTAAGGGGGTGTGAGCTCTCTAGGTTTGATGAGGGATAGGGGGCCAACAGAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * *
3811106 CCAGCACCCATCGTACATCATGTGTGCACA-CCCCCCGGCCCCCCCGATCGTCGGAAGCTCAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATG
* * * * * *
3811170 CCGCCGGTCAGGTTCTCCGGTGATGCTCCAATGATGGTACCCTGATGAAGAAAATTGTGGCACCA
195 CCGCCGGTCAGGTTCTCC---GA-G---C--GGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* *
3811235 GCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGGTCCGATCTTAGACTGGGAAT
251 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * **
3811300 GAACACCGTATGCTTAGACTGGGAAT-ATACTCCGTGTGCCTAAGTCAACCTACGAAATGAGCAA
316 GAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * **
3811364 GTGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGTAAGCCGGGGATTGGTCGGGTCCCCCTCTGC
380 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * * * *
3811429 GTGGTGCCGATCCTGCTGCCACAACCCTCGGTCTGG-CCTGATCTTAGACTGGGAGTGAACTCCG
445 GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCC-GATCTTAGACTGGGAATGAACTCCG
* * * * *
3811493 TATGCCTAAGCCAATCGAC-AAAGCGAGCGAGCGGGCAGACGGGCGGGCACTACGCCGGCCAGAG
509 TATGCCTAAGCCAACCGACGAAA-CGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAG
* ** * * * * *
3811557 GGATAGGATGCGCAAGCCA-TGGATCGATAAGGTGGTAGGTTGATTTAGGCATATCTTCATGTTT
572 AGACGGGATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** *
3811621 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGA
636 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* **
3811686 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGGTTCGGGA
701 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
* *
3811751 TTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTT
766 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * **
3811816 GTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCATGATTTGA
831 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3811879 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3811944 TCTTTAACGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
3812009 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATTC
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * *
3812074 TGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGCCGAAGAAAAATGCGGCACCAG
196 CGCCGGTCAGGTTCT-C--CGA-G---C-G-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
3812139 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTAC-GTCCGATCTGATCTTAGACTGGGAAT
252 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCCGGTCCGATCTTAGACTGGGAAT
* * * *
3812203 GAACTCCGTATGCTTAGCCTAGGAATGAACTCCATATGCCTAAGTCGACCCACGAAACGAGCGTG
316 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
3812268 CGGGCGCTCAGCAGGCTAGAGGGGCGGGATACGCAAGTCGGGGTTC-AGCCGGGTCCCCCTCTGT
381 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGC
* * * ** * *
3812332 GTGCTACCGATCTTGCTACCACAGCCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
445 GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
3812397 ATGCCTAAGCCAACCGACGAAACGATCGGACTGGCAGGCAGACGGGCACTACGCCAGCCAAAGAG
510 ATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
3812462 ACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTG
574 ACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** * * *
3812527 TGTGCCAATGCCATACTTATGGCTTGTAAATCCATACAATGGTCCGTTAAACCTTCACGTGAAGT
639 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * * ** * *
3812592 TTCAGGGCAAGACGATTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCATTTCAGAATTT
704 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * * * *
3812657 TTTTAAATTTTTTTGGAAGGATTTTTGGGCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTT
769 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
** *
3812722 GGCATGCACAAAAAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGA
834 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
3812782 AAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3812847 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATGGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * * * * *
3812912 CCAGCACCCATCGCACATCATGTGTGCACA-CCCCTCGTCCCCCCGATCGCCGAAACACTAATTC
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * * *
3812976 CGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGCCGAAGAAAAATGTGGTACCAG
196 CGCCGGTCAGGTTCT-C--CGA-G---C-G-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * ** * *
3813041 CACATGCCCGAGGCCAGTATGTGCTGCCGCAACCCTCGTTCCCATCTGATCTTATACTGGGAATG
252 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* *
3813106 AACTCTGTATGCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
317 AACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * ** *
3813170 CGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCGTAAGCCGGGGTTCGGTCGGGTCCCCCTCTGTG
381 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * * * * * * *
3813235 TGCTACCGATCCTGCTACTGGAACCCTTGGTTTGATCCAATCTTAGACTGGGACTGAACTCTGTA
446 TGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
3813300 TGCCTAAGCCAACCGACGAAATGAGCAGGCGGGTGGGCGGGTGGGCACTACGTCGACCAGAGAGA
511 TGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
* *
3813365 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGT
575 CGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
* *
3813430 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTT
640 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
*
3813495 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTT
705 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * *
3813560 TAAAAAATTTTTT-GGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTTTATTTTT-TT
770 T-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * *
3813623 TGCTATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCGTTTGA
834 GGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
3813684 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
3813749 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATCTAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** * *
3813814 CCAGTACCCATCGTACATCATGTGCGCACACCCCCCCGGCGCCCCCGATTGTCGAAACCCCAATG
131 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATG
* * * * * * *
3813879 CTGCCTGTAAGGTTCTCCGA-C-AATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCC
195 CCGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * * * *
3813942 CGAGCCCAGCATGTGCTTCTGCGACCCTCAGTTCGGTTCGATCTTCGACTGGGAATGAACTTCGT
260 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* **
3814007 ATAGCTTTGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCGC
325 AT-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-GCGC
* * ** * * *
3814072 TCAGCCGGACATAGGGGTAGGATGCGCAAGCCGAGGATCAATCGGGTCCCCCTCTGCGTGCTACC
388 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACC
* ** * * *
3814137 GATCCTACTGTCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAA
453 GATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * **
3814202 GCCAACCGACGAAATGAGCGGGCAGGCGGGCGCGCGGGCACTACGTCGGCCAGAGAGATAGGATG
518 GCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
3814267 CGCAGGCCA-TGGATCGATAGGATGGTAG
582 CGCAAG-CAGTGGATCGATAGGGTGGTAG
3814295 CCATTTTTAT
Statistics
Matches: 12797, Mismatches: 1768, Indels: 783
0.83 0.12 0.05
Matches are distributed among these distances:
855 335 0.03
856 9 0.00
858 1 0.00
861 7 0.00
862 56 0.00
863 166 0.01
864 3 0.00
865 10 0.00
866 188 0.01
867 1 0.00
868 7 0.00
869 2 0.00
870 65 0.01
871 111 0.01
872 67 0.01
873 9 0.00
874 163 0.01
875 70 0.01
876 209 0.02
877 255 0.02
878 88 0.01
879 61 0.00
880 426 0.03
881 284 0.02
882 36 0.00
883 3 0.00
884 4 0.00
885 172 0.01
886 14 0.00
887 336 0.03
888 680 0.05
889 436 0.03
890 79 0.01
891 25 0.00
892 757 0.06
893 1525 0.12
894 792 0.06
895 434 0.03
896 282 0.02
897 87 0.01
898 37 0.00
899 2 0.00
900 70 0.01
901 206 0.02
902 1215 0.09
903 1630 0.13
904 283 0.02
905 234 0.02
906 3 0.00
907 1 0.00
908 4 0.00
910 1 0.00
911 8 0.00
912 4 0.00
913 9 0.00
914 8 0.00
916 5 0.00
918 3 0.00
919 6 0.00
920 4 0.00
921 6 0.00
922 2 0.00
923 2 0.00
924 1 0.00
925 4 0.00
926 4 0.00
927 1 0.00
928 3 0.00
929 1 0.00
930 6 0.00
931 4 0.00
932 2 0.00
934 4 0.00
935 6 0.00
936 2 0.00
937 20 0.00
938 29 0.00
939 11 0.00
940 6 0.00
941 7 0.00
942 7 0.00
943 6 0.00
944 13 0.00
945 28 0.00
946 22 0.00
947 2 0.00
948 6 0.00
949 5 0.00
950 3 0.00
951 3 0.00
952 5 0.00
953 8 0.00
954 6 0.00
955 7 0.00
956 5 0.00
957 6 0.00
959 1 0.00
960 1 0.00
961 4 0.00
962 12 0.00
963 5 0.00
964 7 0.00
965 2 0.00
967 7 0.00
969 1 0.00
970 2 0.00
972 1 0.00
976 3 0.00
977 2 0.00
978 8 0.00
979 5 0.00
980 1 0.00
981 1 0.00
983 9 0.00
984 3 0.00
985 4 0.00
986 6 0.00
987 282 0.02
988 7 0.00
989 112 0.01
990 69 0.01
991 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGAGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGAT
CCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
AGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
Found at i:3802359 original size:26 final size:26
Alignment explanation
Indices: 3802323--3802375 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3802313 CTAGTCCGAT
3802323 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
3802349 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3802375 C
1 C
3802376 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3804141 original size:26 final size:26
Alignment explanation
Indices: 3804105--3804157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3804095 CTAGTCTGAT
3804105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3804131 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3804157 C
1 C
3804158 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3805034 original size:26 final size:26
Alignment explanation
Indices: 3804998--3805050 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3804988 TCGGTCCAAT
3804998 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3805024 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3805050 C
1 C
3805051 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3806038 original size:101 final size:101
Alignment explanation
Indices: 3805863--3806048 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 101
3805853 GTGCTGCTGC
* * * * *
3805863 AACCCTCGGCCGGGTCTGGTCTTAGGCTGGGAATGAACTCCGCACGGTTAAACTGGGAATGAACT
1 AACCCTCGGCCGGGTCTGATCTTAGACTGGGAATGAACTCCGCACGCTTAAACTGGGAATAAACC
3805928 CCGTATGCCTAAGTCAACCCTCGGTCCTGCTACCAT
66 CCGTATGCCTAAGTCAACCCTCGGTCCTGCTACCAT
* * * **
3805964 AACCCTCGGTCC-GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATAAAC
1 AACCCTCGG-CCGGGTCTGATCTTAGACTGGGAATGAACTCCGCACGCTTAAACTGGGAATAAAC
* *
3806028 CCCGTGTGCCTAAGTTAACCC
65 CCCGTATGCCTAAGTCAACCC
3806049 ACGAAATGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
101 70 0.97
102 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (101 bp):
AACCCTCGGCCGGGTCTGATCTTAGACTGGGAATGAACTCCGCACGCTTAAACTGGGAATAAACC
CCGTATGCCTAAGTCAACCCTCGGTCCTGCTACCAT
Found at i:3806908 original size:26 final size:26
Alignment explanation
Indices: 3806872--3806924 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3806862 CCGGACCGAT
3806872 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3806898 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3806924 C
1 C
3806925 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3808654 original size:26 final size:26
Alignment explanation
Indices: 3808625--3808677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3808615 TCGATCCGAT
3808625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3808651 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3808677 C
1 C
3808678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3809535 original size:26 final size:26
Alignment explanation
Indices: 3809493--3809543 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3809483 GGTCGAATCA
*
3809493 TAGACTGGAAATAAACTTCGTATGCT
1 TAGACTGGAAATAAACTCCGTATGCT
*
3809519 TAGACTAGG-AATGAACTCCGTATGC
1 TAGACT-GGAAATAAACTCCGTATGC
3809544 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGACTGGAAATAAACTCCGTATGCT
Found at i:3810430 original size:26 final size:26
Alignment explanation
Indices: 3810392--3810444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3810382 CTGGTCTAAT
* *
3810392 CTTAGAATGGGAATGAACTCGGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
*
3810418 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
3810444 C
1 C
3810445 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:3812218 original size:26 final size:26
Alignment explanation
Indices: 3812189--3812241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3812179 CCGATCTGAT
* *
3812189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3812215 CTTAGCCTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3812241 C
1 C
3812242 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3815758 original size:26 final size:26
Alignment explanation
Indices: 3815729--3815781 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3815719 CCGATCCGAT
*
3815729 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3815755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3815781 C
1 C
3815782 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3816377 original size:895 final size:892
Alignment explanation
Indices: 3814851--3834579 Score: 23285
Period size: 902 Copynumber: 22.2 Consensus size: 892
3814841 CCGGTTCGAT
** * * *
3814851 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCTCGAAACAAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
3814916 CGGCTAGAGGGGTGGGATACGTAAGTCGGGGATCGATCGGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * ** * * * *
3814981 TACTGCTGTAACCCTCAATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
3815046 CCGACGAAACGAGCGAGCGGGCTAGCGGGCGGGCACTAAGCCGGCCAGAGACACGAGATGCGCAA
196 CCGACG-AA--A-CGAGC-GG---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
3815111 GCCGTGGTTTGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
3815176 TTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
3815241 GAATCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATATTTT
383 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAAT-TTTT
* *
3815306 T-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
3815370 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCAATT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
3815435 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
3815500 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
3815565 TCATGTGCGCACACCCTCCCCGACCCCCCGATCGCCGGAACCCCAATACCGTCGGTTAGGTTCTC
706 TCATGTGCGCACACCC-CCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
3815630 CGACGATGCTCTAGCTATGCTGCCCCGGCGAAGAAAAATGCGGCACCAACAAATGCCCGAGCCCA
770 CGACGATGCTC--GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
3815695 GCATGTGCTGCTGCAACCCTCGATCCGATCCGATCTTATACTGGGAATGAACTCCGTATG
833 GCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
3815755 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * * * *
3815820 CGACCAAAACGGTGGCATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
3815885 TGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
3815950 CCGACAAAACGAGCGGGCGGGCGGATACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** * * **
3816015 TCGATAGGGTGAAAGGTGGGTTTAGGCACATGTTCATATTTTTGTGTGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
3816080 GCTTCTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGAC-CGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * * *
3816144 TTCTATTTTCCATAATTTCTGAAACTTTTTGGGATTAGGGATTTTTTAAAATTTCTTCGGAAGGT
391 TTCTATTTTTCACGATTTTTGAAACTTTTTGGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
3816209 GTTTTTGTCCCAAACCTAGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
3816274 CTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
3816339 TAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
3816404 ATTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTACG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** *
3816469 CACACCCTCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCC-GTCAGGTTCTCCGGTGACG
715 CACACCC-CCCCGCCCCCCCGATCGCCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGACGATG
* * * * ** ** * *
3816533 CTTCGACTATGCTACCTCGGTGAAGAAAAATATGGCACCAGCACATGCTCAAGCCCAGCATGTGC
778 C-TCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
3816598 TGCTGCAACCCT---T--G----G----T---C------TG-A-TCCG-AT-
841 TGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3816624 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
3816689 CGACCAGAAGGGCGGGATGCACAAGTCGGGGACCGGTGGGGTCCCCCTCTGCGTCCTG-CTGATT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
** * * **
3816753 CTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
3816818 ACCAACGAAATGTGCGGGTGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAA----CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
3816883 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGTGTGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
3816948 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
3817013 -CATTTTTTATTTTCCACAATTTTTGAAACTTTTTGGGGTTAGTGATTTTTTAAAA-TTTTTCTG
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTC-G
* * * * * * *
3817076 GAAGTAGTTTTCGTCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTCGGCTTGCACAAAAAA
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
3817141 CTTCAGCCAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
3817206 ACACTTTAACGGCTACTGGCAGCAAACCTATAAAAT-ACAAATGCCTCTTTAAGGGGGTGTGACT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGT
* * * *
3817270 TCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
3817335 ATGTGCGCACA---CCCC-CCCCCCCGATCGCCAGAACCCTAATGCCGTCGATCAGGATCT-C--
708 ATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* ** * * *
3817393 CGA------CGATGGTGCCCCGATGAAGAAAAATGCAACACCAACACATGCCCGAGCCTAGCAAG
773 CGATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
3817452 TGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATG
838 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
3817507 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
3817572 CGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATTGATCGGGTGCTCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
3817637 TACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGGATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
3817702 CCGACGAAACGAGCGGGCGGACGGGCACCACGCTGGCCAGAGAGATGGGATGCGCAAGCCATGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
3817767 TCAATAAGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
3817832 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-CTGACTCAT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACTCGT
* * * * *
3817896 TTTGTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGAATTTTTCAAAATTTTTTTGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
3817961 ATTTTTGGTCCTAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATGCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
3818026 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCGGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
3818090 TTAATGGCTACTTGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
3818155 TGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
3818220 GTACAGCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
714 GCACA-CCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * **
3818285 CTCCGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCTTAGCCC-GCATGTGC
778 CT-C-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
3818349 TGCCGTAACCCTCACTCTGATCCGATCCGATCCTACACAGGGAATGAACTCTGTATG
841 TGCCGCAA--C-C-CTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
3818406 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCATTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
3818471 CGGCCAGAGCGGCGGGATGCACAAGCCGGGGATC-GACGAGGTCCCCCTCTATC-TGCTGTCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG-GGTCCCCCTCT-GCGTGCTGTCGAT
* * **
3818534 CCAGCTTCCGCAACCCTCGGTCTC-GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
3818598 CAACTGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACG
193 CAACCGACG--A-AA-----CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* ***
3818663 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTATGTGCCAATG
250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
3818728 CCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAA
315 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
3818793 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
380 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTT
* * * **
3818858 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA--TGATCCCTATATTTTTGTTGGCATACGTA
444 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
3818921 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCAT
509 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
3818986 TTCAGACACTTTAATGGCTA-TGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGT
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
3819050 GAGTTCTCAACGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCA
639 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
3819115 CATCATGTGTGCACACCCCCCCGGCCTCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTC
704 CATCATGTGCGCACACCCCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * ** *
3819180 TCTGACGATGCTCCGGTGATGGTGCCCCGACGAACAAAAATGTAGCACCAGCACATTCCCGAGCC
768 TCCGACGATGCT-C-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** *
3819245 CAGCCTGTGCTACCGCAACCCTC-AGT-CTAGTTTGATCTTAGACTGGGAATGAACTCCATATG
831 CAGCATGTGCTGCCGCAACCCTCGA-TCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
3819307 CTTAGACTAGGAATCAACTACGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * ** * **
3819372 CAGCCAGAGAGGCATGATGCGCAAGTCGGGGATCGACCGGGTCCCCTTCTATGTGCTG-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * ** * * * * * *
3819436 CTGCTACTGCAACCTTTAGTTCGGTCTGATCTTAGATTGGGAATGAATTACGTATGCCTAAGTCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
3819501 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * * * *
3819566 ATCGATAGGGTGGTCGGTGGGCTTGGGCATATCTTCGTATTTCTACATGCCAATGCCATTTTGAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * * *
3819631 GGCTGGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGATGTTTCAAGGCAAGACCACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
3819696 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTACAATTTTTTTGGATGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
3819761 ATTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCT
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-
3819826 A-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
3819890 TTTAATGGCTACTGGCAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
3819955 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCTTGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
3820020 CGCACACCCCCCCGGCCCCCCGATCGTCGGAACACCAATGCTGCCGGTCAGGTTCTCCGACGATG
713 CGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
3820085 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGT
778 CT-CG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
3820150 TGTCGCAA--C-CG---C-A---G----T---CT--G---G---TCCG-AT-
841 TGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
3820175 CTTAGACTGGGAATGAACTCCATATGCCTTAGTCAACCCACGAAACGAACGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * ** *
3820240 TGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTGCCCCTCTGCGTGCTACCGATGC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
3820305 TGCTGTCACAACCATCGGTCCGGT-TGCATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCCGGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** *
3820369 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACATCGGTCA-ACGAGACGGGATGCGCAAGC
195 ACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGA-GAGACGGGATGCGCAAGC
* * *
3820433 CCTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *** *
3820498 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCATGAAGTTTCTTGATGAGACAA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
3820563 CTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
385 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
3820628 GAAGGTGTTTTGGCCCGAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAA
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
3820693 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
514 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
3820758 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGT
578 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
3820823 TCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * * *
3820888 ATGTGCGCACACCCCTCCCGGCCCCCCCAATCGTTGGAAGCCCAATGCTGCCGATCAGGTTCTCC
708 ATGTGCGCACACCCC-CCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
3820953 GGCAATGCTCTGGCGATGGTACCCCGACGAAGAAAAATGTGGCACTAGCACATGCCTGAGCCCAG
771 GACGATGCTC--GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
3821018 CATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATG
834 CATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
3821077 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** ** *
3821142 TGGCCAGAGCGACGAGATGCATAAGCCGGGGATCAATCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * * * * *
3821207 TGCTACCACAACCCTCAATCCGGTCTGATATTTGACTAGGAATGCACTCCGTATGCCTAAGCGAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
3821272 CCGACGAAACAAGCGGGCGGGCAGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGCATGCGCAA
196 CCGACGAAACGAGCGGGC--G--GGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
3821337 GCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTG-AGTGCCAATGCC
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
3821401 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
3821466 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTT
* ** *
3821531 TCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTCATTGGCGTGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * **
3821596 ACAATTCAGCTAAAAACTCAAAGTGTACAAGAAATTGTGACCATTTGAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
3821661 TAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * ** * *
3821726 GTTCTTGAGGTTTGATGAGAGATAGGGGGATATTATATGGGCCAAGTACCAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
3821791 TCATGGGCGCACA-TCCCCCGGCCTCCCGATCGTCGGAACCGCAATGCCACAGGTCAGGTTCTCC
706 TCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
3821855 GACGATGCTCCAACGATGGTACCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
771 GACGATGCT-C-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * ** * *
3821920 CAAATGCTGCCGTAACCCTTGGTCTAATCTGATCTTAGATTGGGAATGAACTCCGTATG
834 CATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
3821979 CTTAGGCTGGGAATGATCT-CGATATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
3822043 CCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
3822108 CTGTTGCCACAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCTTAGGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
3822173 ACCGACGAAACGAGCGGGCGGGCGAGCAGGTAGGCACTACACCGGCCAGAGAAACGGGATGCGCA
195 ACCGACGAAACGAGCGGGC--G-G-GC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
3822238 AGCCGTGGATCGGTAGGGTGGTAGGTGCGTTTAGGCACATCTTAATATTTCTGCGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
3822303 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
3822368 CGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTTGGGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTT
* * ** * *
3822433 TCGGTAGGATTTTTGGCCTAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
3822498 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATTACCATTTGAAAAAAGTGTCCCCACTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TT
* *
3822563 T-AGACACTTTAATGGCTAATGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
3822627 AGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** *
3822692 ATCATGTGCGCGCACCCCCGCCGGCCCCCCAGATCGCCAGAACCCCAATGTTGTCGGTCAGG---
705 ATCATGTGCGCACACCCCC-CC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
**
3822754 T-------T-CTC-C---GGT--------GAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCA
768 TCCGACGATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * **
3822799 GCATGTGCTGTCGTAACCCTTGGTCC-AGTCCGATCTTAGATTGGGAATGAACTCTATATG
833 GCATGTGCTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3822859 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3822924 TGGCCACA-GGGCGGGATGCGCAAGCCAGCGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * * * * * * * **
3822988 TGCTACTACAACCCCCGATCTGATCTGATCTTAGATTAGGAATAAACTTTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
3823053 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGAAGGGATGCGCAAACCG
196 CCGACGAAAC--G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ** * * * * * *
3823118 TGGGTCGATAGGGTGGTTTGTGGGTTTAGGTACAACTTCATATATCTACGTGTCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
3823183 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACAACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
3823248 CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
3823313 AGGATTTTTGGCCCGAAACTTAGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
** *
3823377 TCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
3823442 ACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
3823507 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
3823572 AGCGCACACCCCCCCCGACCACCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
711 TGCGCACA-CCCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * **
3823637 GATGCTTCGACGATGGTGCCCCGACGAAGAAAATTACGGCACCAGCGCTTGCCCAAGCCCAATAT
774 GATGC-TCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
3823702 GTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
837 GTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
3823758 CTTAGACTAGGAGTGAGCTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
3823823 CGGCCAGAGGGGCAAGATGCACAAGCGGGGGATTGGTCGGGTCCCCCTTTGCGTGCTATCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
3823888 TGCTACCGCAACCCTTGATCTGGTTCGATCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
3823953 CCGATGAAACGAGTGGGCGGGCGGGTGGGCCGGCACTATGCCGGCCAGAGAGACAGGATGTGCAA
196 CCGACGAAACGA----GCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
3824018 GCCGTGGACCGATAGGGTGGTAGTTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
3824083 GTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCATGTGAAGTTTCATGGCAAGAT
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * **
3824148 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTATGCGGTTTGGGATTTTGTAAAAACTTTT
383 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTT
* * *
3824213 CGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAA
447 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
3824278 AAATACAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTGCCCATTT
512 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT
* *
3824343 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
3824408 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTTCCAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
3824473 TCATGTGCACACA-CCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
706 TCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * **
3824537 -A--A------CGATGGTGCCCCGACGAAGAAAAATTTGGCACTAGCACATGCTCGAGCTTAGCA
771 GACGATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
3824593 TGTGCTGCCGCAACCCTC-AGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATT
836 TGTGCTGCCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
3824650 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** *
3824715 CAGCCAGAGGGTCGAGATGCGCAAGCCGAGGATCAGTTGAGTCCCCCAATGCGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * * *
3824780 TGCTACCGCAACCCTCGATCTGGTTCGATCTTACACTGGGATTGAACTCTGTATGCCTAAGCGAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
3824845 CTGACGAAATGATAGGGCGAGCGGGCGGACGGGCACTAC-CTCCACCAGAGAGACGAGATGCGGA
196 CCGACG--A--A-A---CGAGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCA
* * ** *
3824909 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTTATATTTCTGTGTGCCGATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** *
3824974 ATTTTTATCTCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
3825039 CGACTCGTTTTCTATTTTTCAGGA-TTTTGTAAACATTTTACGGTTCGAGTTTTTTTAAAATTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTG-AAAC-TTTTTGGGTTCGGGATTTTTTAAAATTTT
* * *
3825103 TTCAGAAGGATTTTTGG-CCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
445 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
3825167 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGACAAAAGTGTACCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
3825232 TTAGACACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
3825297 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
3825362 ATCATGTGCGCACACCCCCCCTGGCCACCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTC
705 ATCATGTGCGCACACCCCCCC--GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
3825427 CCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCTGCACATGCCCAAGCC
768 TCCGACGATGCT-CG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
3825492 CAGCATGTGCTGCCCCAACCATCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATG
831 CAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
3825554 CTTAGACTGGGAATGAACCCCGCATGCCTATGTGAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
3825619 TGGCCAGAGGGACGGGATACGCAAGCCGAGGATTGGTCGGATCCCCATCTGCGTGCT-ACTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * ** *
3825683 TTGCTACCGCAACCTTCAATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
3825748 ACCGACGAAACGAACGGGCGGGCAGGCGGGCACTATGTCAGCCAGAGAGTCGGGATGCGTAAGTC
195 ACCGACGAAACG-A---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
3825813 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
3825878 TTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
3825943 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGA
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGG
** * *
3826008 AAGGAGTTTTCACCCCAAAC---CTAGTCGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
** * *
3826069 TTCATTTAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
3826134 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT-ATGGGGTGTGAGTTG
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
3826198 TCAAGGTTTGATGAGGGATAGGGGGCCCATATAAAGGCCAAGTACCACCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
3826263 GTGCGCACATCCCCCTCG----GCC-A-C-CCCG-ACCCCAATGCCGTCGGTTAGGTTCT-CTAG
710 GTGCGCACA-CCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* * * * *
3826319 TGATGCTTCGACGATGGTGCCCCGACGAAGAAAATTACGGCACCAGCACTTGCCCGAGCCCAACA
773 CGATGC-TCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
3826384 TATGCTGCCGTAACCCT---T--G----G-TC-----C-------G-A-TCCG-AT-
836 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3826415 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3826480 CGACAAGA-GGGCGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTGAGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
3826544 TGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
3826609 CTGACGAAACGAGCGGGCGAGCAGGCACGCACTACGCCGACTAGAGAGATAGGATGCGCAAGCTG
196 CCGACGAAACGAGCGGGCGGGC-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
3826674 TGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATACCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
3826739 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATC-TGAAGTTTCATGGCCAGACGAC
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGACGAC
* ** ** *
3826803 TCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAG
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
3826868 AAGGATTTTTGGCCCCAAGCTTTGTAGATGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
3826933 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
3826998 CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
3827063 TCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGG-CAAGTACCAGCACCCATCACACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
3827127 GTGCGCACAGCCCCCCTCGGCCCCCCCGATCATCGGAACCCCTATGCTGCCGGTCAAGTTCT-C-
710 GTGCGCACA-CCCCCC-C-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
3827190 -CGA------CGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
772 ACGATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
3827248 GTGCTGCCGCAA--C-C-AT-CG----G-TC-----C---G---G---TCCG-AT-
837 GTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
3827278 CTTAGACTAGGAATGAACTCTGTATGGCTAAGTCAACCCACGAAATGAGCCTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3827343 CGGCCAGAGGGGCGGTATGCGCAAGTCGGGGATTGATCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
3827408 TGCTGCCGCAACCCTCGGTCTGGTCCGTTCTTACACTGGGAATGAACTCAGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *** *
3827473 CCGACGAAATGAGTTAGCGGGCGGGCACTAC-CACGGCCAGAGAGACGGGATGCGCAAGTCGTGG
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
3827537 ATCGATTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTA
260 ATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
3827602 TGG-TATGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
324 TGGCT-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** *
3827666 GTTTTCTGTTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTTCGAAA
388 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
3827730 GGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
3827795 CAGCTAAAAACTCGAAGCGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCACATTTTAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
3827860 CTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTT
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
3827925 GAGGTTTGATGAGGGATAGGGAGCCAATCTAAGGGCCAAGTACCAGCACCCATCGCACAACATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * **
3827990 GCGCACA-CCCCCCGACCCCCCCGATTGCCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGGTGA
712 GCGCACACCCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
*** ** *
3828054 TGCTCTGACGATGGTGCCCCGGTAAAGAAAAATATGGCACCAGCACATGCCCGAG-CCAGCATTT
776 TGCTC-G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
3828118 GCTGCCACAAACCTCGGTCCGGTCCAATCTTAGATTGGGAATCAACTCCGTATG
839 GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3828172 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3828237 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCTCTTTGCGTGCTATCCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
3828302 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
3828367 CCGATGAAACGAGCGGGCGGGGCGGGCGAGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGCGGGC-GGGCGGGC-A-C---TAC-GC--CGGCCAGAGAGACGGGATGCGCA
3828432 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
3828497 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
3828562 CGACTCGTTTTTTATTTTTCAAGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTAT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTT
** * * *
3828626 TCAAAAGGAATTTTGGCCCAAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
3828691 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTATGACCATTTGGAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
3828756 TAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
3828821 GTTCTTGAGGTTTGATGAGGGATAGGGGG-CAATCTAAGGGCCAAGTACCAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
3828885 TCATGTGCACACA-CCCCCCGCCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCCC
706 TCATGTGCGCACACCCCCCCGCCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** ** * *
3828949 CGGTGATGCTC-CGATGATAGTGCCCCGGTGAA-AAAAATTCGGCACCAGCACATGCCCGATCCC
770 CGACGATGCTCGCGATG---GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
3829012 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTTGATTGGGAATGAACTCCGTATG
832 AGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
3829073 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
3829138 CGGCCAGA-GGGCGGGATGCGAAAGTCAGAGATCGGTCGGGTCCCCCTCTGCGTGCT-TCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGT-CGATC
* * * ** *
3829201 TTGCTGCCACAACCCTCGGTCCGTTCTAATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
3829266 ACCGACGAAACAAGCGGGCGGGC---CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
3829328 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
3829393 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAGTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
3829458 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTATTTCAGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
** * * * *
3829523 AGTTTAAGCCGCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCCCAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * ***
3829588 GCTAAAAAGTCAAAGAGTACAAGATTTT-TCGACCACTTGAAAAAAGTGTCCCCATTTTTTACAC
519 GCTAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
3829652 TATAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
3829717 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-AAAGTACTAGCACCCATCGCATATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** * *
3829781 CGCACACCCCCCGGGCCCCCCCGATCGTCGAAAACCTGATGTCACCGGTCAGGTTCT-C--CG--
713 CGCACACCCCCC-CGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * ** *
3829841 G---G-GATGGTGCCTCGATGAAGAAAATTATGGCACCAGCACATGCCCGAGCCCAGCATGCGCT
777 GCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * *
3829902 GCCATAACCCTCAATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
842 GCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3829953 CTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
3830018 CAGCCAGAGGGGCGTGATGCACAAGCCGGGGATCGGAT-GGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGTCGATC
* ** * * *
3830082 CTGCTACCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
3830147 ACCGATGAAACGATCGGGCGGGTGGGCGGGCACTACACCGGCCTGAGAGATAGGATGCGCAAGCC
195 ACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
3830212 GTGGATCGATAGGGTGGTAGTTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
3830277 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
3830342 TCATTTTCTATTCTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGG
* **
3830407 AAGGAGTTTGGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAACAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AA
* * * * *
3830471 ATTTAGCTAGAAACTCAAAGTGTATAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
3830536 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGT-AAACGGTCTTTAAGGGGGTGTGAGT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
3830600 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCTCCCATCGCACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
3830665 ATGCGCGCATA-CCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGA
708 ATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * *
3830729 CGATGCTTCGGCGATGGTGCCACGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCA
773 CGATGC-TC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
3830794 TGTGCTACCGCAACCCTTGGTCCGATCAGATCTTAGACTGGGAATGAGCTCCGTATG
836 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
** * *
3830851 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3830916 CAGCCAGAGGGGCGGGATGCACAAGCCTGGGATCGGTCGTGTCCCCCTCTACGTGCTGTCGATGC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * ** * *
3830981 TACTACCGTAACCCCTGATCTGGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
131 TGCTGCCGCAA-CCC---TC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
3831046 GCCAACTGACGAAATGA----GCGGGTGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
191 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
3831107 GTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
3831172 TTATGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGA
321 TTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
3831237 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTG
385 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
3831302 AAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCTTGCACAAAACA
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
3831367 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
3831432 ACACTTTAATGGTTACTAGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** * * *
3831497 CTCAAGGTTTGATGAGGGATAGGGCACCAATATAAGGGCCAAGTACTAGCACCCATAGCATATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * **
3831562 TGTGCGCACA-CCCCCCGGCCCCCTGATCGTCGGAATCCCAATGCCACCGGTCAAGTTCTTCGGT
709 TGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** ** * *
3831626 GATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCACCAACACATGCTCGAGCCCAGCAT
774 GATGCT-CG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
3831691 GTGCTACCGTAACCCTTGGTCC-AGTCCGATCATAGACTGGGAATGAACTTCGTATG
837 GTGCTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
*
3831747 CTTAGACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATG-AA--A---------CG---A--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
3831794 --G-CAGAGGGGCGAGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
3831856 TACTGCTGTAA-CCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
3831920 CCGACGAAACGA--------GCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
3831977 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
3832042 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
3832107 TTCT-TTTATTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
391 TTCTATTT-TTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
** * *
3832171 AGTTTTGGAACCAAACTTGGTAGACATGATCCTTGTATATTTT-TTGGGATGCAC-AAAAAATTC
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTC
* *
3832234 AGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTCAAATAAA-TGTCCCCATTTCAGACA
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA-AAAGTGTCCCCATTTCAGACA
* * * *
3832298 CTTTAATGGCTACTGGCAG-TAACCTGTAAAATCTCAAATGCTCTTTTATGGAGCTGTGAGTTCT
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCT
* * *
3832362 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
3832427 TGCGCACACCCCCCTGGCCCCCCCGATCGTCC-GAACCCCAATGCCGCCGGTCAGGTTCT-C--C
711 TGCGCACACCCCCC-CGCCCCCCCGATCG-CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * *
3832488 ---G---GCGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCGCATGCCTGAGCCCAGCATGT
774 GATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
3832547 GCTGCCGCAA--C-C-AT-CG----G-TC-----C---G---G---TCCG-AT-
839 GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
3832575 CTTAGACTAGGAATGAACTCTGTATGGCTAAGTCAAACCCACGAAATGAGCCTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
3832640 TCGGCCAGAGGGGCGGTATGCGGCAAGCCGGGGATTGATCGGGT-CCCCTCGTGCATGCTGCCGA
65 CCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGGTCGGGTCCCCCTC-TGCGTGCTGTCGA
* * * * * *
3832704 TCCTGCTGTCGGTAACCCTCGGTCTGGTCCGTTCTTACAACTGGGAATGAACTCAGTATGCCTAA
128 TCCTGCTG-CCGCAACCCTCGGTCCGGTCCGATCTTA-GACTGGGAATGAACTCCGTATGCCTAA
* *** *
3832769 GCCAACCGACGAAATGAGTTAGCGGGCGGGCACTAC-CACGGCCAGAGAGACGGGATGCGCAAGT
191 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGC
* *
3832833 CGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
3832898 TTTATGGCTTATAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * ** *
3832963 CTCGTTCTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTTTTAATTTTTTT
385 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGA-TTTTTTAAAATTTTTTC
* * * * *
3833028 GAAAGGAGTTTTGGCCCCAAACTTGTTACACGTGATCCCTGTATTTTTGTTAGCATGCACAAAAA
448 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
3833093 AATTCAGCTAAAAACTTGAAGTATACAAGATTTTGTGACCATTTGGAAGAAA-TG--CCCATTTC
513 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTC
* *
3833155 AGACACCTTTAATGGCTACTGGCA-CAAACCTGTAAAATCTCCAAATGCTCTTTAAGGAGCTGTG
577 AGACA-CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGT-
* * *
3833219 GAGTTCTCACAGGGTTTGAATGAGGGATAGGGGGCCAATCTAAGGGCCAAGTAACTAGCACCCAT
639 GAGTTCTC-GA-GGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCAT
* **
3833284 TGCAACATCATGT-CGCA-A-CCCCTGGCCCCCCCGATCGTCC-GAA-CCCAATGGCCGCCGGTC
700 CGC-ACATCATGTGCGCACACCCCCCCGCCCCCCCGATCG-CCGGAACCCCAAT-GCCGCCGGTC
* *
3833344 AGGCTTCT-C--C---G---GCGATGGTGCCCCGACGAAGAAGAAATGTGGCACCAGCGCATCGC
762 AGG-TTCTCCGACGATGCTCGCGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACAT-GC
* * * * * *
3833400 CTGAGCCTAGCAAGTGCTGCCGCAACCCTCGATCCTGGTCCAATCTTAGACTGGGAATGAACTTC
824 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC-GATCCGATCTTAGACTGGGAATGAACTCC
3833465 GTATG
888 GTATG
* **
3833470 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
3833535 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** * *
3833600 TGCTGCTGTAACCCCCAGTCTAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAACCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
3833665 CCGACGAAACGAGCGTACGGGCGGACTAGCACTACGTCGACCAGAGAAACGGGACGCGCAAGTCG
196 CCGACGAAACGAGCGGGCGGGCGG----GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
3833730 TGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCAAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
3833795 TATGGCTTATAAAATT-ATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTGATGGCAAGACGAC
322 TATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * *
3833859 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTTAATTTTTTTGA
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
3833924 AAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCCTGTATTTTTGTTAGCATGCAAAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
3833989 TTCAGCTAAAAATTTGAAGTATACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
3834054 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGCTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
3834119 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * *
3834184 GTGCGCACACCCCCTGGCCCCCCCGATCGTCC-GAACCCCATTGCCGTCGGTCAGGTTCT-C--C
710 GTGCGCACACCCCCCCGCCCCCCCGATCG-CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
3834245 ---G---GCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGT
774 GATGCTCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
3834304 GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
3834358 CTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
3834423 CGGCCAGAGGGG-GGGATGCGCAAGTCGAGGATCGGCCAGGTCCCCCTTTACGTGCTG-CCAGTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGA-TC
* * * * ** * * * *
3834486 TTGCTGCTGCAACCCCCAGTCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATCCCTAAACCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
3834551 ACCGATCCGAAACAAGCGGGCGGGCGGGC
195 ACCGA--CGAAACGAGCGGGCGGGCGGGC
3834580 GGGCGGGGGA
Statistics
Matches: 16383, Mismatches: 1961, Indels: 981
0.85 0.10 0.05
Matches are distributed among these distances:
828 26 0.00
829 6 0.00
830 10 0.00
831 2 0.00
833 2 0.00
836 1 0.00
839 1 0.00
842 2 0.00
844 2 0.00
845 2 0.00
849 2 0.00
850 21 0.00
851 36 0.00
852 6 0.00
853 15 0.00
854 97 0.01
855 1 0.00
856 8 0.00
857 58 0.00
858 36 0.00
859 9 0.00
860 595 0.04
861 259 0.02
862 241 0.01
863 451 0.03
864 516 0.03
865 229 0.01
866 42 0.00
867 55 0.00
868 262 0.02
869 289 0.02
870 12 0.00
871 11 0.00
872 313 0.02
873 640 0.04
874 264 0.02
875 417 0.03
876 3 0.00
877 5 0.00
878 7 0.00
879 434 0.03
880 442 0.03
881 127 0.01
882 11 0.00
883 180 0.01
884 40 0.00
885 16 0.00
886 7 0.00
887 240 0.01
888 697 0.04
889 367 0.02
890 234 0.01
891 224 0.01
892 541 0.03
893 348 0.02
894 392 0.02
895 1055 0.06
896 935 0.06
897 127 0.01
898 270 0.02
899 360 0.02
900 504 0.03
901 463 0.03
902 1317 0.08
903 143 0.01
904 696 0.04
905 528 0.03
906 485 0.03
907 245 0.01
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:3817521 original size:26 final size:26
Alignment explanation
Indices: 3817481--3817533 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3817471 CTGGTCTGAT
3817481 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
3817507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
3817533 C
1 C
3817534 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:3819332 original size:26 final size:26
Alignment explanation
Indices: 3819281--3819333 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3819271 CTAGTTTGAT
* * *
3819281 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATCAACTACATATG
*
3819307 CTTAGACTAGGAATCAACTACGTATG
1 CTTAGACTAGGAATCAACTACATATG
3819333 C
1 C
3819334 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTACATATG
Found at i:3821089 original size:26 final size:26
Alignment explanation
Indices: 3821052--3821102 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3821042 CGATCCGATC
*
3821052 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
*
3821078 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
3821103 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:3822884 original size:26 final size:26
Alignment explanation
Indices: 3822833--3822885 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3822823 CCAGTCCGAT
* *
3822833 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3822859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3822885 C
1 C
3822886 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3823761 original size:26 final size:26
Alignment explanation
Indices: 3823732--3823784 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3823722 CTGATCCGAT
*
3823732 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
3823758 CTTAGACTAGGAGTGAGCTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3823784 C
1 C
3823785 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3824652 original size:26 final size:26
Alignment explanation
Indices: 3824623--3824674 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3824613 TCCGATCCGA
3824623 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
*
3824649 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
3824675 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:3825580 original size:26 final size:26
Alignment explanation
Indices: 3825528--3825580 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3825518 CTGATCCGAT
* * *
3825528 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGCATG
3825554 CTTAGACTGGGAATGAACCCCGCATG
1 CTTAGACTGGGAATGAACCCCGCATG
3825580 C
1 C
3825581 CTATGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGCATG
Found at i:3827540 original size:159 final size:157
Alignment explanation
Indices: 3827249--3827540 Score: 338
Period size: 159 Copynumber: 1.8 Consensus size: 157
3827239 GCCCAGCATG
* * * *
3827249 TGCTGCCGCAACCATCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGGCTAAGTCAA
1 TGCTGCCGCAACCATCGGTCCGGTCCGATCTTACACTAGGAATGAACTCAGTATGCCTAAGCCAA
* ** * * * *
3827314 CCCACGAAATGAGCCTGCAGGCGCTCAGTCGGCCAGAGGGGCGGTATGCGCAAGTCGGGGATTGA
66 CCCACGAAATGAGCCTGCAGGCGCACACACGGCCAGAGAGACGGGATGCGCAAGTC--GGATGGA
3827379 TCGGGTCCCCCTCTGCATGCTGCCGATCC
129 TCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * *
3827408 TGCTGCCGCAACCCTCGGTCTGGTCCGTTCTTACACTGGGAATGAACTCAGTATGCCTAAGCCAA
1 TGCTGCCGCAACCATCGGTCCGGTCCGATCTTACACTAGGAATGAACTCAGTATGCCTAAGCCAA
* * *
3827473 CCGACGAAATGAG-TTAGCGGGCGGGCACTACCACGGCCAGAGAGACGGGATGCGCAAGTC-G-T
66 CCCACGAAATGAGCCT-GCAGGC--GCAC-A-CACGGCCAGAGAGACGGGATGCGCAAGTCGGAT
3827535 GGATCG
126 GGATCG
3827541 ATTAGGGTGG
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
158 1 0.01
159 80 0.73
160 1 0.01
161 3 0.03
162 1 0.01
163 24 0.22
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (157 bp):
TGCTGCCGCAACCATCGGTCCGGTCCGATCTTACACTAGGAATGAACTCAGTATGCCTAAGCCAA
CCCACGAAATGAGCCTGCAGGCGCACACACGGCCAGAGAGACGGGATGCGCAAGTCGGATGGATC
GGGTCCCCCTCTGCATGCTGCCGATCC
Found at i:3828175 original size:26 final size:26
Alignment explanation
Indices: 3828146--3828198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3828136 CCGGTCCAAT
*
3828146 CTTAGATTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
3828172 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
3828198 C
1 C
3828199 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:3829956 original size:26 final size:26
Alignment explanation
Indices: 3829927--3829979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3829917 CCGGTCCGAT
* *
3829927 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
3829953 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
3829979 C
1 C
3829980 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:3831759 original size:26 final size:26
Alignment explanation
Indices: 3831723--3831773 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3831713 AGTCCGATCA
*
3831723 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
3831749 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
3831774 CTAGTCAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:3833495 original size:26 final size:26
Alignment explanation
Indices: 3833444--3833496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3833434 CTGGTCCAAT
* *
3833444 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3833470 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3833496 C
1 C
3833497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3836057 original size:26 final size:26
Alignment explanation
Indices: 3836028--3836080 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3836018 CCGATACAAT
3836028 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
3836054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
3836080 C
1 C
3836081 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:3836963 original size:26 final size:26
Alignment explanation
Indices: 3836927--3836976 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3836917 CCGGTCCGAT
* *
3836927 CTTAGATTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
3836953 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
3836977 TGCCTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:3837824 original size:26 final size:26
Alignment explanation
Indices: 3837795--3837847 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3837785 CCGGTCTGAT
* * *
3837795 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
*
3837821 CTTAGGCTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
3837847 C
1 C
3837848 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:3838729 original size:26 final size:26
Alignment explanation
Indices: 3838700--3838752 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3838690 CCGGTCTAAT
*
3838700 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAAATCCGTATG
*
3838726 CTTAGATCGGGAATGAAATCTGTATG
1 CTTAGATCGGGAATGAAATCCGTATG
3838752 C
1 C
3838753 CCACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATCGGGAATGAAATCCGTATG
Found at i:3839631 original size:26 final size:26
Alignment explanation
Indices: 3839602--3839654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3839592 CCGGTCTGAT
*
3839602 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
3839628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
3839654 C
1 C
3839655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:3839905 original size:117 final size:117
Alignment explanation
Indices: 3839687--3839923 Score: 298
Period size: 117 Copynumber: 2.0 Consensus size: 117
3839677 CGTGCAAGAG
* * * *
3839687 CTCAGCCGGCCAGAGGGGATAGATGCACAAGCTGGGGATCGGCCGAGTCCCCCTCTGTGTGCTGC
1 CTCAGCCGGCCAGAAGGGATAGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGTGTGCTAC
* * ** *
3839752 CGATCTTGCTACTGCAACCCTTGATTCGGTCTGATCTGAGACTGGGAATGAA
66 CGAACCTGCTACTGCAACCCTCAATTCGGTCCGATCTGAGACTGGGAATGAA
* * * *
3839804 CTCAGCCGGCCAGAAGGGATGGATG-AGTAAGCCGGGGATCGACCGGGTCCCCCTTTGTGTGCTA
1 CTCAGCCGGCCAGAAGGGATAGATGCA-CAAGCCGGGGATCGACCGAGTCCCCCTCTGTGTGCTA
* * *
3839868 TCGAACCTGTTGCTGCAACCCTCAA-TCTGGTCCGATCTGAGACTGGGAATGAA
65 CCGAACCTGCTACTGCAACCCTCAATTC-GGTCCGATCTGAGACTGGGAATGAA
3839921 CTC
1 CTC
3839924 CATATGCCTA
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
116 3 0.03
117 99 0.97
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (117 bp):
CTCAGCCGGCCAGAAGGGATAGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGTGTGCTAC
CGAACCTGCTACTGCAACCCTCAATTCGGTCCGATCTGAGACTGGGAATGAA
Found at i:3840777 original size:513 final size:509
Alignment explanation
Indices: 3839804--3840786 Score: 1430
Period size: 513 Copynumber: 1.9 Consensus size: 509
3839794 TGGGAATGAA
* * *
3839804 CTCAGCCGGCCAGAAGGGATGGATGAGTAAGCCGGGGATCGACCGGGTCCCCCTTTGTGTGCTAT
1 CTCAGCCGGCCAGAAGGGATGGATGAGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTAT
** * *
3839869 CGAACCTGTTGCTGCAACCCTCAATCTGGTCCGATCTGAGACTGGGAATGAACTCCATATGCCTA
66 CGAACCTACTACCGCAACCCTCAATCTGGTCCGATCTGAGACTGGGAATGAACTCCATATGCCTA
* * * * *
3839934 AGCCATCCGATGAAACGAATAGGTGGGCGGGCACTACGCCGTCCAAAAAGACGGGATGCGCAAGC
131 AGCCAACCAACGAAACGAATAGGCGGGCGGGCACTACGCCGTCCAAAAAGACGGGATGCACAAGC
*
3839999 CGTGGATCGATAGGGTGGTAGCTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
196 CGTGGATCGATAGGGTGGTAGCTAGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATT
*
3840064 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTA
261 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
3840129 CTCATTTTCTATTTTTCACGATTTGTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
326 ATCATTTTCTATTTTTCACGATTTGTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *** *
3840194 GAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACA
391 GAAAGAGTTTTGGCCCCAAACTTGGCAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
3840259 ATTCAGC-AAAGAACTCAAAGTGCACAAAACAATACAGAAAGGAACGTGCGGGCG
456 ATTCAGCTAAA-AACTCAAAGTGCACAAAACAATACAGAAAGGAACGTGCGGGCG
* * * *
3840313 CTCAGCCGGCCAG-AGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
1 CTCAGCCGGCCAGAAGGGAT-GGATGAGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTA
* * * * * * *
3840377 TCGATCCTACTACCGTAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
65 TCGAACCTACTACCGCAACCCTCAATCTGGTCCGATCTGAGACTGGGAATGAACTCCATATGCCT
* * * *
3840442 AAGCCAACCAACGAAACGAGCAGGTGGGCGGGCGGGCACTACGTCGTCCAGAAAGATGGGATGCA
130 AAGCCAACCAACGAAACGA--A--TAGGCGGGCGGGCACTACGCCGTCCAAAAAGACGGGATGCA
* * * **
3840507 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGTGTGCCAATG
191 CAAGCCGTGGATCGATAGGGTGGTAGCTAGGTTTAGACACATCTTCATATTTCTGCATGCCAATG
3840572 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
256 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
3840637 GACGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
321 GACGAATCATTTTCTATTTTTCACGATTTGTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * * * *
3840702 TTTGGGAAAGATTTTTGGCCCCAAACTTTGTAGACACGATCCTTGTATTTTTTTTGGCATGGACA
386 TTTCGGAAAGAGTTTTGGCCCCAAACTTGGCAGACACGATCCTTGTATTTTTGTTGGCATGCACA
3840767 AAAAAATTCAGCTAAAAACT
451 AAAAAATTCAGCTAAAAACT
3840787 TGAAGTGTAC
Statistics
Matches: 416, Mismatches: 52, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
508 5 0.01
509 121 0.29
511 1 0.00
513 286 0.69
514 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (509 bp):
CTCAGCCGGCCAGAAGGGATGGATGAGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTAT
CGAACCTACTACCGCAACCCTCAATCTGGTCCGATCTGAGACTGGGAATGAACTCCATATGCCTA
AGCCAACCAACGAAACGAATAGGCGGGCGGGCACTACGCCGTCCAAAAAGACGGGATGCACAAGC
CGTGGATCGATAGGGTGGTAGCTAGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
ATCATTTTCTATTTTTCACGATTTGTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAAGAGTTTTGGCCCCAAACTTGGCAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCAAAGTGCACAAAACAATACAGAAAGGAACGTGCGGGCG
Found at i:3842212 original size:903 final size:901
Alignment explanation
Indices: 3840303--3846523 Score: 7964
Period size: 903 Copynumber: 7.0 Consensus size: 901
3840293 CAGAAAGGAA
* *
3840303 CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC
* * * * * **
3840368 TGCGTGCTGTCGATCCTACTACCGTAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
3840433 CGTATGCCTAAGCCAACCAACG--AA-A-CGAGCAGGTGGGCGGGCGGGCACTACGTCGTCCAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * * * *
3840494 AAGATGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTT
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* ***
3840559 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
3840624 AGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGA
325 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
* * * * **
3840689 TTTTTTAAAATTTTTTGGGAAAGATTTTTGGCCCCAAACTTTGTAGACACGATCCTTGTATTTTT
390 TTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
3840754 TTTGGCATGGACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAA
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
3840819 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTC
519 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * * * **
3840884 TTTAATGGGGTGTGAATTCTTGAGGTTTGATGAGCGATAAGGGGCCAATATAAGGGCCAAGTATG
584 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
3840949 AGCACGCATCGCACATCATGTGCGAACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCG
649 AGCACGCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
*
3841014 TCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCA
714 TCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCA
* * * * * *
3841079 CATGCCCAAGCCCAGCATGTGCTGTCGTAAACCTTGGTCTAATCCGATCTTAGACTGGGAATGAA
779 CATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGATCCGATCTTAGACTGGGAATGAA
* * *
3841144 CTTCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
844 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
3841202 TGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCGAGCCGGGGATCGGTCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC
* * * * * *
3841267 TGCATGTTGCCAATCCTACTGCAGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
3841332 CGTATACCTAAGCCAGCCGATGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
** * *
3841397 GAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGATAT-TTCATATTT
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
3841461 TTACCTGCCAATGCCATTTTTATGACTTGTAAATTCGTACAATGGTCCCTTGAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
3841526 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
325 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
* *
3841591 TTTTTTAAAAGTTTTTCGGAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
390 TTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
3841656 GTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTTGTGACCATTTGAA
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAA
* ** * * *
3841721 AAAAGTGTCCCTATTTCAGATGCTTTAATGGCCACTCGCAGCAAACCTATAAAATCTCAAATGCT
518 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
3841786 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAAAATAAGGGCCAAGTAC
583 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * *
3841851 CAGCACGCATCGCACATCATGTGCGAACACCCCCCAGCCCCCCTGATCGTCAGAACCCCAATACC
648 CAGCACGCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* *
3841916 GTCGGTCAGGTTTTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGTGGGCACCAG
713 GTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATG-CGGCACCAG
* * * * *
3841981 CACATGCCCAAGCCCAGGATGTGCTGTCGTAAACCTCGGTTTGATCTGATCTTAGACTGGGAATG
777 CACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGATCCGATCTTAGACTGGGAATG
* * *
3842046 AACTTCGTTTGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAT
842 AACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** * * * *
3842106 TGTGCGGGTGCTCAAACGGCTAGAGGGGCGGGATGCGCGAA-CCGAGATCAGTTGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCCGGGATCGGTCGGGTCCCCCTC
* * * * *
3842170 TGCATGTTGCCAATCCTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * *
3842235 CGTATGCCTAAGCCAACCGATGAAAAGAACGGACGGGCGGGCGGGCGGGCACTACGTCAGCTAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* *
3842300 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGATAT-TTCATATTT
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
3842364 TTACCTGCCAATGCCATTTTTATGACTTGTAAATTCGTACAATGGTCCCTTGAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
3842429 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
325 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
* * * *
3842494 TCTTTTAAAAGTTTTTCGAAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
390 TTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
3842559 GTTGGCATCCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAA
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAA
* * *
3842624 AAAAGTGTCCCCATTTCGGACGCTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCT
518 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
3842689 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCCAGTAC
583 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* ** *
3842754 CAACACGCATCATACATCA-GAGCGCACAACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
648 CAGCACGCATCGCACATCATGTGCGCAC-A--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * * *
3842818 GCCGTCTGTCAGGTTCTCTGGTGATGCTCCGACAATGGCGCCCCGACGAAGAAAAATGCAGCACC
710 GCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACC
*
3842883 AGCACATGCCTGAGCCCAGCATGTGCTGCCGC-AACC-C---TTG----G-TC-----C--GG--
775 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGATCCGATCTTAGACTGGGAA
* * * *
3842929 T---C--CG-AT-CCTAGGCTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAG
840 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** * *
3842984 CGTGCGGGAGCTCAGCCAGCCAGAGGGGATGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTC
* * * * * * * * * *
3843049 TACGTGCTGCTGATCTTGCTGCTGTAACCCTTGGTCCGGTTTAATCTTAGACTGGAAAAGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
3843114 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGTGCGGGTACTACGCTGGCCAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
*
3843179 GAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
3843244 TTGCTTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
** ** *
3843309 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACAATTCAGGA
325 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
* *
3843374 TTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTT
390 TTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
3843439 GTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
454 GTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
3843503 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCT
518 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
3843568 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
583 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
3843633 CAGCAC-CATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCT
648 CAGCACGCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * *
3843697 GTCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGTCCC-AGCGAAGAAAAATGTGGCACCAG
713 GTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAG-GAAGAAAAATGCGGCACCAG
* ** *
3843761 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCCAGTCCGATCTTAGAATGGGAAT
777 CACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGA-TCCGATCTTAGACTGGGAAT
* *
3843825 GAAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
841 GAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ** * * *
3843886 CGAGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTC
* * * * * * * *
3843951 TACGTGCTGCCGATCCTACTGCCACAATCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* *
3844016 CGTATGCCTAGGCCAACCGACG--AA-A-C--G-A-GCGGGCGGGCGGGCACTACACCGGCCAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * * * * **
3844073 GAAACGGCAAGCGTAAGCCGTGGATAGATAGGGTTCTAGGTGGGTTTAGGCACATCTTCATA--T
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
3844136 TT--CTG-CAA----A-----ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
3844189 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACGTTTTACGGTTTGGGA
325 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
*
3844254 TTTTTTAAAATCTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
390 TTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
3844319 -TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
3844383 AAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-GAACAACAAACCTGTAAAATCTCAAATGCT
519 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCT
* ** * *
3844447 CTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATATTATATGGGCCAAGTAC
583 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* **
3844512 CAGCA-GCCACCGCACATCATGTGCGCACACCCTCCCGG-CCCCCCGATCACCGGAACCCCAATG
648 CAGCACG-CATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * * *
3844575 CCGTAGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
711 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCA
* * * * * *
3844640 GCACATGCCGGAGCCTAGCAAGCGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAAT
776 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGATCCGATCTTAGACTGGGAAT
* * * **
3844705 TAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAATAAG
841 GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** * * * * *
3844766 CGTGCGGGCGCTCAGTAGGCCACAGGGGTGGGATACGCAAGCTAGGGATCGGCCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTC
* * * ** *
3844831 TGCGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTCGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* *
3844896 CGTATGCCTAAGCCAACCGACGAAATGAGC--G--GGCGGGCGGGCGGGCACTATGCCGGCCAGA
130 CGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGA
** * * *
3844957 GAGACGACATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAAGCACATCTTCATATTT
195 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
3845022 CTACATGCCAGTGCCATTTTTATGGCTTTTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGA
260 TTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
3845087 AGTTTCATGGCAAG-TCGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGGG
325 AGTTTCATGGCAAGAT-GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
* *
3845151 A----TT----TTTTT-GGATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
389 ATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
3845207 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAA
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
3845272 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
519 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
3845337 TTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACC
584 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
3845402 AGCACCCATCGCACATTATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGAAACCCCAAT-CC
649 AGCACGCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * * *
3845466 TGCCAGTCAAGTTCTCC---G--G-T-----GATGGTGCCCTGACGAAGAAAAATACGGCACCAG
713 -GTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAG
* * * * ** * *
3845520 CACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGG-TCCAGTCTGATCTTAGATTGGGAAT
777 CACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGA-TCCGATCTTAGACTGGGAAT
*
3845584 GAACTTCATATGCTTAGAC--------AA----G---G---AA-T-------------GAG
841 GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** **
3845613 CGTACGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCATGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC
* * * * *
3845678 TGTGTGCTGCCGATCCTGCCGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
3845743 TGTATGCCTAAGCCAACCGACGAAACA-AGTGAGC-GGACGGGCGGGCAGGCACTACGCCGGCCA
130 CGTATGCCTAAGCCAACCGACGAAA-AGAGCGGGCAGG-CGGGCGGGCGGGCACTACGCCGGCCA
* *
3845806 GAGAGACGGGATGCGCAAGCAGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATAT
193 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
3845871 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACAT
258 TTTTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * * *
3845936 GAAGTTTCATGGCAAGACGACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
323 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
*
3846001 GATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTT
388 GATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
3846066 TTGTTGGCATGCACAAAAAAATTTAGCTAAAAACACGAAGTGTACAAGATTTTGTGACTATGTGA
452 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
3846131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
517 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
3846196 TCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
582 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
3846261 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACGCCCCCGATCGCCGGAACCACAATG
647 CCAGCACGCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
** * *
3846326 CCACCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCG-GTGAAGAAAAATGCGGCACC
711 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAG-GAAGAAAAATGCGGCACC
* * * *
3846390 AGCACATGCCTGAGCCCAGCATGTGCTGCCAC-AACTCTCGGTCTGGTCCGATCTTAGACTGGGA
775 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAAC-CTCGGTTTGATCCGATCTTAGACTGGGA
* * * * ** *
3846454 AAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACTAACGAAATGAG
839 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
*
3846517 CGGGCGG
1 CGTGCGG
3846524 ACGGGCGCGC
Statistics
Matches: 4689, Mismatches: 489, Indels: 283
0.86 0.09 0.05
Matches are distributed among these distances:
847 136 0.03
849 1 0.00
850 2 0.00
851 201 0.04
855 2 0.00
860 7 0.00
861 300 0.06
862 2 0.00
864 2 0.00
866 1 0.00
867 2 0.00
871 4 0.00
872 96 0.02
875 1 0.00
876 117 0.02
877 5 0.00
878 86 0.02
879 615 0.13
880 737 0.16
881 8 0.00
882 2 0.00
883 1 0.00
884 83 0.02
885 4 0.00
886 4 0.00
887 4 0.00
888 48 0.01
889 222 0.05
890 43 0.01
892 3 0.00
893 3 0.00
894 83 0.02
895 2 0.00
896 1 0.00
897 1 0.00
898 102 0.02
899 138 0.03
900 2 0.00
901 4 0.00
902 408 0.09
903 922 0.20
904 202 0.04
905 82 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCT
GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
TACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
TTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACGCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTTTGATCCGATCTTAGACTGGGAATGAACT
TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
Found at i:3843847 original size:26 final size:26
Alignment explanation
Indices: 3843811--3843863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3843801 CCAGTCCGAT
*
3843811 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
3843837 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
3843863 C
1 C
3843864 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Done.