Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 35 of 120
Found at i:3844720 original size:26 final size:26
Alignment explanation
Indices: 3844691--3844743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3844681 CTGATCCGAT
*
3844691 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3844717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3844743 C
1 C
3844744 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3846471 original size:26 final size:26
Alignment explanation
Indices: 3846442--3846493 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3846432 CTGGTCCGAT
3846442 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
3846468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
3846494 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:3847233 original size:26 final size:26
Alignment explanation
Indices: 3847197--3847249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3847187 CTAGTCTGAT
3847197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3847223 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3847249 C
1 C
3847250 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3847940 original size:26 final size:26
Alignment explanation
Indices: 3847911--3847963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3847901 TCGGTCTGAT
* *
3847911 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3847937 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3847963 C
1 C
3847964 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3848846 original size:26 final size:26
Alignment explanation
Indices: 3848810--3848862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3848800 CCGGTCTGAT
3848810 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
3848836 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
3848862 C
1 C
3848863 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:3848911 original size:899 final size:897
Alignment explanation
Indices: 3847332--3856941 Score: 12361
Period size: 891 Copynumber: 10.7 Consensus size: 897
3847322 GGCTAGTCTG
* *
3847332 ATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
3847397 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * *
3847462 TGCAGTTCAAGATTTTTTAAAATTTTTTCGGAACGAGTTTTGGCTCCAAACTTGGTAGACGAGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
3847527 GCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
3847591 GACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
3847656 TCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
3847721 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGA
* * * **
3847786 ACCGCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC-ACCGAAGAAAAA
455 ACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGA-CGAAGAAAAA
* * * *
3847850 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCCACCCTTGGTTCGGTCTGATCTTA
518 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA
* * *
3847915 GATTGGGAATGAACTTCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
583 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
3847980 AACGAACGTACGGGCGCTCAACCGGCCAGAGGGGCGGGTTGCCCAAGCCGGGGATCGGTCGGGTC
648 AACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* ** **
3848045 CCCCTCTATGTGCTATCGATCCTGCTACTGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAAT
713 CCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
* * * * * *
3848110 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCAGGCAGGCAGGCACTACGTCGGCCA
778 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
* * *
3848175 AAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
843 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * **
3848230 ATCTTCATATTTCTTCATGAAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
3848295 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCCAATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
3848360 TGCGGTCCGAGATTTTGTAAAATTTTTTCGG-AGGAAGTTTTGGCCCCAAACGTGGTAGACATGA
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
3848424 TGCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
3848489 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
3848554 ATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATGTA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
3848619 AGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCAG
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGG
* * * *
3848684 AACCCCAATGCCACCGATCAGGTTCTCTGATGATGCTCCAGCGATAGTGCCCCGACGAAGAAAAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAA
* * *
3848749 TACGACACCAGCACATGCCTGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCTGATCTTA
518 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA
** *
3848814 GACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
583 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
3848879 AACGAGCGTCCGAGCGCTCAGCCTGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTC
648 AACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** * **
3848944 CCCCTCTACATGCTA-CTGATCTTGCTACTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
713 CCCCTCTACGTGCTATC-GATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
3849008 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGGGAGGGCGGGCGGGCGGGCACTA
777 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--G--C----GGGCGGGCGGGCGGGCACTA
* *
3849073 CGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
834 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
3849137 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
3849202 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
3849267 TAAGGTTCGAGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGA
131 TACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
3849332 TGCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
3849397 TGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
3849462 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
3849527 AGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGG
* * * * *
3849592 AACCCCAATGCCACCGATCAGGTTCT-CAATGATGCTCCGGCGATAGTGCCCCGACGAAGAAGAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAA
* * ** * *
3849656 TGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCTATAACCCTCGG-CCGATCCGATCTTA
518 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA
* ** *
3849720 GATTGGGAATGAACTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
583 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
** * * * **
3849785 AATAAGCAT-AGAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCTTGGATCGG-CTGGG
648 AACGAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGG
* * * * * * * * *
3849848 TCCCCTTCTGCATGCT-GCTGATCCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGAATAGG
711 TCCCCCTCTACGTGCTATC-GATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGG
* * * * *
3849912 AATGAGCTCCATATGCCTAAGCTAACCGACGAAACGAGCGGGCGAGCGGGCGGGCTCTACGCCGG
775 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGG
* * * *
3849977 CCAGAGAGACGGGATACGCAAGCCCTGGATCGATAGTGTGGTAGGTGGGATTAGGCAC
840 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
3850035 ATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* **
3850100 GCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
3850165 TACGGTAT-GGGATTTTTTAAAATTTTTTCAGAACGG-GTTTTGGCCCCAAACTTGGTAGACGTG
131 TACGGT-TCGAGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
3850228 ATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCATCTAAAAACTCGAAGTGTACAAGATTTT
194 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
3850293 GAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGG-TACTGGAAGTAAACCTGTA
259 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTA
*
3850357 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
323 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
3850422 TAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGACCTCCCTGATCGCC
388 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTC
* *
3850487 AGAACCCCAATGCCGCCGGTCAAGTTCTCC------G----GCGATGGTGCCCCGACGAAGAAAA
452 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCCCGACGAAGAAAA
* * * * *
3850542 ATACGGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCTGCCACCCTTGGTTCGGTCTGATCTT
517 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTT
* * * *
3850607 AGATTGGGAATGAA-TCCGTATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACA
582 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
3850671 AAATGAACGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
647 AAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
** ** * ** *
3850736 CCCCCTCTGTGTGCTGCCAATCCTGC-AGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
712 CCCCCTCTACGTGCTATCGATCCTGCTA-CCACAACCCTCGATCTGGTCTGATCTTAGACTGGGA
* * *
3850800 ATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACAGGCAGGCGGGCACTACGC
776 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G---GGCGGGCGGGCACTACGC
* * *
3850865 CGGGCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCAC
837 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** ** *
3850926 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATATCTTGTCAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
3850991 GCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTCTTCACGTTTTTTGAAAATTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
3851056 CACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * *
3851121 CCTTGTATTTTTGATGGCATGTACAAAACATTTCAGCTTAAAACTCAAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
3851186 GACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
3851251 TCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * *
3851316 GGGCCAAGTACCAGCAGCCATCGCACATCATGTGCACGCACCACCCTGGTTCCCCCGATCGTCGA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG-CCCCCCGATCGTCGG
* * * *
3851381 AACCCCAATGTCGTC-GTCAGGTTCTCCGACGATGATCCGACGATGGTGCCCCGACGAAGAAAAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAA
* * * ** * *
3851445 TGCGGCACCAGCACATGCCCGATCCCAGCATGTGCTGCCGCAACCCTCACTCTGGTAC-AATCTT
518 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGT-CTGATCTT
* * * * **
3851509 ACACTGGCAATGAACTCCGTATGGTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATA
582 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** * *
3851574 AAATTAGCGTGC-AGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCAGGGGATCGGTCGG
647 AAACGAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGG
* * * * ** *
3851638 GTCCCTCTCTACGTGCTA-CTGATCTTGCTACCATAACCCTCAATCCAGTTTGATCTTAGACTGG
710 GTCCCCCTCTACGTGCTATC-GATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGG
* * * *
3851702 GAATGAACTTCGTACGCCTAAGCCAACCGACGAAACGAGCGTGTGGGCGGGGGGGCGGGCACTAT
774 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGGCGGGCACTAC
* * * * * * * *
3851767 GCTGGCTAGAGACACAGGATGCACAAGCCGTGGATCGATCGGGTGATAGGTGGGTTTAGCCAC
835 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
3851830 ATCTTCATATTTCTGCATGCCAATTCCTTTTTTATGGCTTGTAAGA-TCATACAATGGCCCCTTA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA-ATTCATACAATGGTCCCTTA
* * * *
3851894 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATT
65 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** *
3851959 TTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG-GGTTTGGCCCCAAACTTGGTAGACGTGA
130 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
3852023 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
3852088 TGACCATTT-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* **
3852152 ATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGCACCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
3852217 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCGATCGTCGGA
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGA
* *
3852282 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGGCCCGACGAAGAAAAAT
455 ACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAT
* * * *
3852347 GTGGTAGCAGCACATG-CTCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCTAATCTT
519 GCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCTGATCTT
* *
3852410 ATACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
582 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
3852475 AAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGCCGGGT
647 AAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * ** * *
3852540 CCCCCTCTACGTGCTGT-GATCCTACTACTGCAACCCTCGGT-TCGGTCTGATCTTAGACTGAGA
712 CCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGATCT-GGTCTGATCTTAGACTGGGA
* * * * * * *
3852603 ATGAACTCCGTATGCCTTAGCCAACCGAAGAAGCGAGCGGGCGGGCGAGCGGGCACTACACTGGG
776 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
* * *
3852668 CAGAGTGACGGGATG-ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCAC
841 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * ***** * * *
3852724 ATCTTCATATTTCTACGTGCCTATGCCGCCGGTCTAGCTTGTAAATTCATACAATAGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
** * * * * **
3852789 TACTTCACGTGAGGTTTCATGGCAAGACGACTCGTGTTCTATTTTTCACAAATTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
3852854 TACGGTTCAAGATTTTTTAAAATTTTTTCGAAATGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
3852919 CCTTGTATTTTTGTTGGTATACACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
3852984 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCCTGTAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CCTGTAAA
3853049 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
3853114 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGG
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGG
* ** ** *
3853179 AACCCCAATGCCGCCGATCAGGTTCTGTGGCGATGCTCCGCGATGGTGCCCTCGATGAAGAAAAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCC-CGACGAAGAAAAA
* * * * * *
3853244 TCCGTCACCAACACATGGCCCGAGCCCAGCATGTACT-ATCGCAACCCTCGGTCTACTCCGATCC
518 TGCGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCTGCT-GCAACCCTC-G--------G----
*
3853308 AATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGG
568 --TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
3853373 GAATGAACTCCGTATGCCTAAGACAACACACGAAACGAGCGTGC-AGGTGCTCAGCTGGGCAGA-
615 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCAGCCGGCCAGAG
* ** * * ** ** *
3853436 GGGCTTGGATATGCAAGCCAGAGATTAG-CTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATC
679 GGGC-GGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTATCGATCCTGCTACC
* * * *
3853500 ACAACCCTCGATCTCGTCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
742 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
3853565 AACGA--------GCGTGCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCTGTGGATCA
807 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
3853622 ATAGGGTGGTAGGTGGGTTTAGGCAC
872 ATAGGGTGGTAGGTGGGTTTAGGCAC
3853648 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
3853713 -CCTTCAAGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * * *
3853777 TGCAGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCAAAAGTTGGTAGATGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* **
3853842 CCTTGTATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
3853907 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
3853972 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAAGATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
3854037 GGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCGCCGGGCCCCCCGATCGTCGG
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-GGCCCCCCGATCGTCGG
** * * **
3854102 AACCCCAATGCTACCGGTCAGGTTCACTGATGATGCTCAAACGATGGTGCCCCGACGAAGAAAAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAA
* * * *
3854167 TACGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CCTGGT-TCGATCT
518 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC-GGTCT-GATCT
* * * * * * *
3854230 TAGATTGGGAATGACCTCCGTATGCTAAGACTGGGAATGAACTCCGTATACGTAAGTCAACTCAT
581 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
3854295 GAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCACAAGTCGGGGATCGGTCAGG
646 GAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
** * * * * *
3854360 TCTTCTTCTACGTGCTATCAATCCTACTGCCACAACCCTC-AGTCTGGTC-CATTCTTAGACTGG
711 TCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGA-TCTGGTCTGA-TCTTAGACTGG
* *
3854423 GAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGA----GCGGGCGGGCGGGCACTACGCCG
774 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
*
3854484 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
839 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** * * *
3854543 ATCTTCATATTTCTGCGTGTGAATGCCATTTTTATGGTTTGTAAATTCATGCAATGGTCCCTTGA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * * **
3854608 GCCTTCACGTGAGGTGTCATGGCAAGACGACTCGTTTTTTATTTTTCACAAATTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
3854673 TACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * *
3854738 CCTTGTATTTTTATTAGCATGCACAAACAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
3854803 GACCATTTAAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
3854868 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGTGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
3854933 GGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCCGGCCCCCCCATCGTCGAAA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
* * *
3854996 CCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATG
456 CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATG
* * * * *
3855061 TGACCCCAGCAAATG-CTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC---C-G----T--
520 CGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAG
* *
3855115 AC---------A------AT-CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAA
584 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
3855164 ACGAGCGTGC-AGGCGCTCAGCTGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTC
649 ACGAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * *
3855228 CCCCTCTGCGTGCTACCGATCTTGCTACCATAACCCTC-AGTCTGGTTTGATCTTAGACTAGGAA
713 CCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAA
* * * * * *
3855292 TGAACTCCGTACGCCTAAGCCAACCGACGAAATGAACGGGTGGGCGGGGGGGCACTACGCTGGCC
777 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
3855357 AGAGAGACAGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCAC
842 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * **
3855413 ATCTTCATATTTCTGCATGCCAATTCGTTTTTTATGGCTTGTAAGA-TCATACAATGGTCCCTTA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA-ATTCATACAATGGTCCCTTA
* * *
3855477 AGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
65 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * * *
3855542 TTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCTCTAAACTTGGTAGATGTGA
130 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
3855607 TCCTTGTATTTTT-TCTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTT
195 TCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
3855671 GTGACCATTTG--AAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAA
259 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
3855734 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
324 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
3855799 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGGCCCCCGATCGTCGG
389 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
* * *
3855864 AACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGTTCCGACGATGGTGCCCCGACGAAGAAAAA
454 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAA
* * * * **
3855929 TGTGGCACTAGCACATG-TTCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCTTTCTGATCTT
518 TGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTT
* * * *
3855993 AGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCATATGCATAAGTCAACCCACG
582 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
3856058 AAACGAGCGTGCGGGAGCTCAACAGGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGTCGGGT
647 AAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * * * *
3856123 CCCCCTCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCGGT-TCGATCTGATATTAGACTGGGA
712 CCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGATCT-GGTCTGATCTTAGACTGGGA
* * * *
3856187 ATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGTGGGTAGGCGGACGGGCGGGCACTACAC
776 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GCG--GGCGGGCGGGCGGGCACTACGC
* * * * *
3856252 CGGGCAGAGTGACGGGATGCGCAAACCGTTGATCGATGGGGTGGTAGGTGGGTTTAGGCAC
837 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * ** * *
3856313 ATCTTCATATTTCTACGTGCCAATGCCACTGGTCTAGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
3856378 GCCTTCTCGTGAAGTTTCAAGGCAAGACGACTCGTGTTCTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * *
3856443 TACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCCAAAGTTGGTAGACGTTAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
3856508 CCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTG
196 CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
3856573 TGAGCATTTGAAAAAAGTGTCCCCATTTTCAGACACCTTAATGGCTACTGGCAGCAAACATGTAA
260 TGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
3856638 AATCTCAAATGCTATTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATGT
324 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
3856703 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
389 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC
* * * * * *
3856768 GAAACCTCAATGCCGCCGGTCTGGTTCTACGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAA
452 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCGACGAAGAAA
** * * ** * *
3856833 AATGCATCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTACGGTCCGATCT
516 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCT
* ** *
3856898 TAGACTGGGAATGAATTTTGTATGCTTAGACTAGGAATGAACTC
581 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
3856942 TCTATGCTTA
Statistics
Matches: 7622, Mismatches: 905, Indels: 362
0.86 0.10 0.04
Matches are distributed among these distances:
866 173 0.02
867 3 0.00
868 147 0.02
869 2 0.00
870 434 0.06
871 1 0.00
873 1 0.00
874 1 0.00
878 1 0.00
880 2 0.00
882 1 0.00
884 1 0.00
887 249 0.03
888 29 0.00
889 1 0.00
890 8 0.00
891 652 0.09
892 147 0.02
893 8 0.00
894 181 0.02
895 262 0.03
896 546 0.07
897 428 0.06
898 524 0.07
899 604 0.08
900 303 0.04
901 263 0.03
902 241 0.03
903 196 0.03
904 442 0.06
905 13 0.00
906 367 0.05
907 294 0.04
908 310 0.04
909 7 0.00
913 1 0.00
914 2 0.00
919 1 0.00
921 1 0.00
922 142 0.02
923 325 0.04
924 105 0.01
925 1 0.00
928 3 0.00
929 7 0.00
930 124 0.02
931 67 0.01
932 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
CTCTACGTGCTATCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
Found at i:3849766 original size:26 final size:26
Alignment explanation
Indices: 3849716--3849768 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3849706 CCGATCCGAT
* * **
3849716 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3849742 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3849768 C
1 C
3849769 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3852436 original size:26 final size:26
Alignment explanation
Indices: 3852407--3852456 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3852397 CCGGTCTAAT
*
3852407 CTTATACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
3852433 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
3852457 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:3853340 original size:26 final size:26
Alignment explanation
Indices: 3853311--3853389 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
3853301 CCGATCCAAT
* *
3853311 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3853337 CTTAGACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTATG
3853363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3853389 C
1 C
3853390 CTAAGACAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3856026 original size:26 final size:26
Alignment explanation
Indices: 3855990--3856042 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3855980 CCTTTCTGAT
*
3855990 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
3856016 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
3856042 C
1 C
3856043 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:3856934 original size:26 final size:26
Alignment explanation
Indices: 3856896--3856967 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
3856886 ACGGTCCGAT
* * *
3856896 CTTAGACTGGGAATGAATTTTGTATG
1 CTTAGACTGGGAATGAACTCTCTATG
*
3856922 CTTAGACTAGGAATGAACTCTCTATG
1 CTTAGACTGGGAATGAACTCTCTATG
3856948 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
3856968 CGTATGCCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:3857701 original size:26 final size:26
Alignment explanation
Indices: 3857661--3857713 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3857651 CCAGTTTGAT
3857661 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3857687 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
3857713 C
1 C
3857714 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3858742 original size:89 final size:89
Alignment explanation
Indices: 3858649--3858814 Score: 205
Period size: 90 Copynumber: 1.9 Consensus size: 89
3858639 GCCCTCTGGA
* * * *
3858649 ACGGGC-ACTTGCC-TCACCGCCATCGGCACAAGCTGGGCCCTAGTGT-GGGTGGTTGCCTT-AA
1 ACGGGCGA-TTGCCTTCACCACCATCGGCACAAGAT-GGCCCTAG-GTAGGGCGGTTGCATTGAA
3858710 TCACCATCGGCACATATCGACCTTTGGT
63 -CACCATCGGCACATATCGACCTTTGGT
* *
3858738 ACGGGCGATTGCCTTGACCACCATCGGCACAAGATGGCCCTTGGTACGGGCGGTTGCATTGAACA
1 ACGGGCGATTGCCTTCACCACCATCGGCACAAGATGGCCCTAGGTA-GGGCGGTTGCATTGAACA
3858803 CCATCGGCACAT
65 CCATCGGCACAT
3858815 GCTGGGCCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
88 2 0.03
89 18 0.27
90 44 0.67
91 2 0.03
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.22
Consensus pattern (89 bp):
ACGGGCGATTGCCTTCACCACCATCGGCACAAGATGGCCCTAGGTAGGGCGGTTGCATTGAACAC
CATCGGCACATATCGACCTTTGGT
Found at i:3858837 original size:45 final size:45
Alignment explanation
Indices: 3858699--3858853 Score: 141
Period size: 45 Copynumber: 3.4 Consensus size: 45
3858689 TAGTGTGGGT
* * * * ** *
3858699 GGTTGCCTTAATCACCATCGGCAC-ATATCGACCTTTGGTACGGGC
1 GGTTGCCTTGACCACCATCGGCACAAGAT-GGCCCATGGTACGGAC
* * *
3858744 GATTGCCTTGACCACCATCGGCACAAGATGGCCCTTGGTACGGGC
1 GGTTGCCTTGACCACCATCGGCACAAGATGGCCCATGGTACGGAC
* * * * * *
3858789 GGTTGCATTGAACACCATCGGCACATGCTGGGCCATGGTGCGGAC
1 GGTTGCCTTGACCACCATCGGCACAAGATGGCCCATGGTACGGAC
*
3858834 GGTTGCCTCGACCACCATCG
1 GGTTGCCTTGACCACCATCG
3858854 ACATATGCCG
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 88 0.97
46 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (45 bp):
GGTTGCCTTGACCACCATCGGCACAAGATGGCCCATGGTACGGAC
Found at i:3859644 original size:26 final size:26
Alignment explanation
Indices: 3859615--3859667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3859605 CTAGTCCGAT
3859615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3859641 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3859667 C
1 C
3859668 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3861234 original size:26 final size:26
Alignment explanation
Indices: 3861198--3861250 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3861188 CCGGTCTGAT
3861198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3861224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3861250 C
1 C
3861251 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3861580 original size:25 final size:26
Alignment explanation
Indices: 3861552--3861600 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
3861542 CCGGTCTGAT
3861552 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3861577 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
3861601 AGCCTAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3862570 original size:45 final size:44
Alignment explanation
Indices: 3862504--3862676 Score: 143
Period size: 45 Copynumber: 3.9 Consensus size: 44
3862494 CGAGCACTTA
* * *
3862504 CCTCGACCGCCATCGGTACAAGCTGGGCCCTGGTGCAGGTGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGC-GGCGGTTG
* * * * *
3862549 CCTCGACCACCATCGACACAAGATGGCCCCCGGTACGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGC-GGCGGTTG
* * * * ** *
3862594 CATCAAACACCATCGGCTCTTGCTGGGCCATGGTGCGAGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCG-GCGGTTG
* *
3862639 CCTCGACCACCATCGGTACATA-CTGAGCCCTGGT-CGGC
1 CCTCGACCACCATCGGCACA-AGCTGGGCCCTGGTGCGGC
3862677 CCCCGAAATG
Statistics
Matches: 96, Mismatches: 30, Indels: 6
0.73 0.23 0.05
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 91 0.95
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.18
Consensus pattern (44 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGCGGTTG
Found at i:3863118 original size:26 final size:26
Alignment explanation
Indices: 3863089--3863141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3863079 TCGATCTGAT
*
3863089 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
3863115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3863141 C
1 C
3863142 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3863677 original size:26 final size:26
Alignment explanation
Indices: 3863641--3863691 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3863631 CTAGTCTGAT
3863641 CTTAGACTGGGAATGAACTCCATATC
1 CTTAGACTGGGAATGAACTCCATATC
* *
3863667 CTTAGACTGGGGATGAACTCTATAT
1 CTTAGACTGGGAATGAACTCCATAT
3863692 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATC
Found at i:3863697 original size:197 final size:196
Alignment explanation
Indices: 3863286--3863848 Score: 637
Period size: 197 Copynumber: 2.9 Consensus size: 196
3863276 TAGACATGGA
*
3863286 ATGAACTCTGTATGCCTAAG-CTAACCCACGAAATGAGCATGCGGGTGCTCAGTCGATCGGAGAG
1 ATGAACTCTGTATGCCTAAGTC-AACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAG
* * * *
3863350 GCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCC
65 GCAAAATGCGCAAGCCAGGAATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCC
* * * * * *
3863415 TGTTGCCGCAACCCTAAGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGG
130 TGCTACCGCAAACCTAAGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTGG
3863480 GG
195 GG
* * *
3863482 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGTGCTTAGTCGATTGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGG
* * * *
3863547 CAGAATGCGCAAGTCAGGAATCGGCCCGGTCTGCCCCTACGTGCTGTCGATCTTGCTACTGGTCC
66 CAAAATGCGCAAGCCAGGAATCGGCCCGGTC-CCCCCTACGTGCTGTCGATCCTGCTACTGGTCC
* *
3863612 TGCTACCGCAAACCTCAGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTG
130 TGCTACCGCAAACCTAAGTC-AGATCCGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTG
3863676 GGG
194 GGG
* * * ** * ** * *
3863679 ATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCTTGCAGGCACTCAGCCGGCCAGAGAAG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGG
** * * ** * * ** * **
3863744 CAGGATGCCCAAGCC-GAGATTCAACCTGGTCCCCTCTGTGTACTGTCGATCCTGCTACAAGTCC
66 CAAAATGCGCAAGCCAG-GAATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCC
* * * * *
3863808 TGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGAGTGGGA
130 TGCTACCGCAAACCTAAGTCAGATCCGATCTTAGACTGGGA
3863849 GCACACTACG
Statistics
Matches: 310, Mismatches: 52, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
195 1 0.00
196 147 0.47
197 161 0.52
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGG
CAAAATGCGCAAGCCAGGAATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCCT
GCTACCGCAAACCTAAGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTGGG
G
Found at i:3865678 original size:45 final size:45
Alignment explanation
Indices: 3865628--3865829 Score: 185
Period size: 45 Copynumber: 4.5 Consensus size: 45
3865618 GTACGGGCAC
* *
3865628 TTGCCTCGACCACCATCGACACAAGCTAGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTAGGCCCTGGTGCGGGCGG
* * * * * * *
3865673 TTGCCTCGATCACCATCGGTACATGC-CGTCTCTTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTAGGC-CCTGGTGCGGGCGG
* * *
3865718 TTGCCTCGACCACCATTGGCACAAGAT-GGCCCTTAGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTAGGCCC-TGGTGCGGGCGG
* * * * * *
3865763 TTGCATCGAACACCATC-GCACATGCCAGGCCGTGGTGCGGACGG
1 TTGCCTCGACCACCATCGGCACAAGCTAGGCCCTGGTGCGGGCGG
* *
3865807 TTACCTCAACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3865830 TGTCGAGCCC
Statistics
Matches: 121, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
44 32 0.26
45 89 0.74
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTAGGCCCTGGTGCGGGCGG
Found at i:3865722 original size:90 final size:89
Alignment explanation
Indices: 3865615--3865829 Score: 238
Period size: 90 Copynumber: 2.4 Consensus size: 89
3865605 AGGCTGCCCT
* * * * * *
3865615 TTGGTACGGGC-ACTTGCCTCGACCACCATCGACACAAGCTAGGCCC-TGGTGTGGGCGGTTGCC
1 TTGGTGCGGGCGA-TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTTAGTGCGGGCGGTTGCA
* * *
3865678 TCGATCACCATCGGTACATGCC-GTCTC
64 TCGAACACCATC-GCACATGCCAGGC-C
*
3865705 TTGGTGCGGGCGATTGCCTCGACCACCATTGGCACAAGATGGCCCTTAGTGCGGGCGGTTGCATC
1 TTGGTGCGGGCGATTGCCTCGACCACCATCGGCACAAGATGGCCCTTAGTGCGGGCGGTTGCATC
3865770 GAACACCATCGCACATGCCAGGCC
66 GAACACCATCGCACATGCCAGGCC
* * * * *
3865794 GTGGTGCGGACGGTTACCTCAACCACCATCGGCACA
1 TTGGTGCGGGCGATTGCCTCGACCACCATCGGCACA
3865830 TGTCGAGCCC
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
89 44 0.42
90 61 0.58
91 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.20
Consensus pattern (89 bp):
TTGGTGCGGGCGATTGCCTCGACCACCATCGGCACAAGATGGCCCTTAGTGCGGGCGGTTGCATC
GAACACCATCGCACATGCCAGGCC
Found at i:3866292 original size:26 final size:26
Alignment explanation
Indices: 3866256--3866308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3866246 TTGGTCTGAT
*
3866256 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3866282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3866308 C
1 C
3866309 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3866603 original size:26 final size:26
Alignment explanation
Indices: 3866567--3866619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3866557 CTGATCCAAT
3866567 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
3866593 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3866619 C
1 C
3866620 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3867630 original size:45 final size:44
Alignment explanation
Indices: 3867562--3867719 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 44
3867552 GTACGGGCAC
** * * *
3867562 TTGCCTCGACTGCCATAGGCACAAGTTGGGCCCTGGTGCGGGTAG
1 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTGGTGCGGGTGG
* * *
3867607 TTTCCTCGACCACCATCGACACAAGATGGCCCTTGGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCC-TGGTGCGGGTGG
* * * * *
3867652 TTGCATCGAACACCATCGGCACATGCTAGGCCATGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTGGTGCGGGTGG
3867697 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3867720 TGTCGAGCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 5 0.05
45 84 0.90
46 4 0.04
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCTGGTGCGGGTGG
Found at i:3868788 original size:170 final size:170
Alignment explanation
Indices: 3868358--3868798 Score: 433
Period size: 170 Copynumber: 2.6 Consensus size: 170
3868348 CCGGCTGGGG
* * * * *
3868358 CTTAGACAT-GGAATGCACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTCAG
1 CTTAGAC-TGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAG
* * * * * * ***
3868422 TCGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGATCCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGGTCGAAGAGGCAGGATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
* * * *
3868487 TGTTGCTGGTCCTGCTGTCGCAACTCTCGATCCGGTCCAAT
130 TGCTGCGGGTCCTGCTCTCGCAACTCTAGATCCGGTCCAAT
* ** ** * * *
3868528 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTACGGGCGCTTAAC
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGC
* * * * * **
3868593 TGG-CCAGAGAGGCAGGATACGCAAGCCGGGGATCGACCCGGTCCCTTCTACATGCTGTCGATCC
66 CGGTCGA-AGAGGCAGGATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGAT-C
* *
3868657 CT-CTGCGGGTCTTGCTACT-GCAAC-CATAGGTCCGGTCCAAT
129 CTGCTGCGGGTCCTGCT-CTCGCAACTC-TAGATCCGGTCCAAT
* * * *
3868698 CTTAGACTGGGATTGCACTATGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTTAGC
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGC
* *
3868763 CGGTCGAAGAGGCGGGATGCGCAAGCCGTGGATCGA
66 CGGTCGAAGAGGCAGGATGCGCAAGCCGAGGATCGA
3868799 TCGAGTGGTA
Statistics
Matches: 215, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
169 3 0.01
170 206 0.96
171 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGC
CGGTCGAAGAGGCAGGATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCCT
GCTGCGGGTCCTGCTCTCGCAACTCTAGATCCGGTCCAAT
Found at i:3869446 original size:13 final size:13
Alignment explanation
Indices: 3869428--3869452 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3869418 TAATGGCACT
3869428 TGATGGCACATGG
1 TGATGGCACATGG
3869441 TGATGGCACATG
1 TGATGGCACATG
3869453 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3869517 original size:45 final size:45
Alignment explanation
Indices: 3869463--3869638 Score: 151
Period size: 45 Copynumber: 3.9 Consensus size: 45
3869453 CATCGACCAT
* *
3869463 CATCGGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGATCAC
1 CATCAGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGAACAC
* ** *
3869508 CATCAGCACATGC-CAGCCCTTGGTGTGGGC-GATTGCCTC-AACCAC
1 CATCAGCACAAGCTGGGCCC-TGGTGTAGGCAG-TTGCCTCGAA-CAC
* * * * * *
3869553 CATCGGCACAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACAC
1 CATCAGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGAACAC
* ** * *
3869598 CATCAGCACATGCTGGGCATTGGTGCAGGTAGTTGCCTCGA
1 CATCAGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGA
3869639 CCATCATCGG
Statistics
Matches: 101, Mismatches: 24, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
44 6 0.06
45 89 0.88
46 6 0.06
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
CATCAGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGAACAC
Found at i:3869634 original size:90 final size:90
Alignment explanation
Indices: 3869458--3869648 Score: 231
Period size: 90 Copynumber: 2.1 Consensus size: 90
3869448 ACATGCATCG
* * * *
3869458 ACCATCATCGGCACAAGCTGGGCCCTGGTGTAGGCAGTTGCCTCGATCACCATCAGCACATGCCA
1 ACCATCATCGGCACAAGATGGCCCCTGGTGTAGGCAGTTGCATCGAACACCATCAGCACATGCCA
* * *
3869523 GCCCTTGGTGTGGGCGATTGCCTCA
66 GCCATTGGTGAGGGAGATTGCCTCA
* * * **
3869548 ACCACCATCGGCACAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACACCATCAGCACATGCTG
1 ACCATCATCGGCACAAGATGGCCCCTGGTGTAGGCAGTTGCATCGAACACCATCAGCACATGCCA
* * *
3869613 GGCATTGGTGCAGGTAG-TTGCCTCG
66 GCCATTGGTG-AGGGAGATTGCCTCA
3869638 ACCATCATCGG
1 ACCATCATCGG
3869649 TACATGTCGA
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 81 0.96
91 3 0.04
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (90 bp):
ACCATCATCGGCACAAGATGGCCCCTGGTGTAGGCAGTTGCATCGAACACCATCAGCACATGCCA
GCCATTGGTGAGGGAGATTGCCTCA
Found at i:3870096 original size:26 final size:26
Alignment explanation
Indices: 3870067--3870119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3870057 CCAGTCCGAT
*
3870067 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
3870093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3870119 C
1 C
3870120 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:3870470 original size:25 final size:26
Alignment explanation
Indices: 3870422--3870473 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
3870412 CCGGTCCGAT
* *
3870422 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3870448 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3870473 C
1 C
3870474 CTAAGTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3873365 original size:161 final size:162
Alignment explanation
Indices: 3873100--3873409 Score: 419
Period size: 161 Copynumber: 1.9 Consensus size: 162
3873090 GATTCGATCC
* *
3873100 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTTTGTATGCCTAAGATAA
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGATAA
* ** * * * * * *
3873165 CCCATGAAACGTGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCA-GATGCGCAAGCCACGGATCGG
66 CCCACGAAACCAGCGTGCGGGCACTCAGCCGACCGGAGAGGAATAATGCGCAAGCCACGGATCGA
3873229 CCTGATCCCCCTCTGCGTGCTGCGGTCGGTCT
131 CCTGATCCCCCTCTGCGTGCTGCGGTCGGTCT
* *
3873261 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACT-GGGAATGAACTTCGTATGCCTAAG-TC
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGG-ATGAACTTCGTATGCCTAAGAT-
* * ***
3873324 AACCCACGAAACCAGTGTGCGGGCACTGAGCCGACCGGAGAGGAATAATGCGCAAGCTGGGGATC
64 AACCCACGAAACCAGCGTGCGGGCACTCAGCCGACCGGAGAGGAATAATGCGCAAGCCACGGATC
3873389 GACCTGATCCCCCTCTGCGTG
129 GACCTGATCCCCCTCTGCGTG
3873410 TTGTAGGTCC
Statistics
Matches: 128, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
160 4 0.03
161 89 0.70
162 35 0.27
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.21
Consensus pattern (162 bp):
GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGATAA
CCCACGAAACCAGCGTGCGGGCACTCAGCCGACCGGAGAGGAATAATGCGCAAGCCACGGATCGA
CCTGATCCCCCTCTGCGTGCTGCGGTCGGTCT
Found at i:3874395 original size:26 final size:26
Alignment explanation
Indices: 3874366--3874417 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3874356 CCAGTCCGAT
3874366 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3874392 CTTATATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3874418 GCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3877416 original size:45 final size:45
Alignment explanation
Indices: 3877362--3877460 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
3877352 GGCTACCCTT
* * * *
3877362 TGGTATGGGCACTTGCCTCGACCGCCATCGGCACAAGCTGGGCCC
1 TGGTGTGGGCACTTGCCTCGACCACCATCGGCACAAGATGGCCCC
** *
3877407 TGGTGTGGGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCC
1 TGGTGTGGGCACTTGCCTCGACCACCATCGGCACAAGATGGCCCC
3877452 TGGTGTGGG
1 TGGTGTGGG
3877461 TGGTTGCATT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.14, C:0.30, G:0.35, T:0.20
Consensus pattern (45 bp):
TGGTGTGGGCACTTGCCTCGACCACCATCGGCACAAGATGGCCCC
Found at i:3877533 original size:45 final size:45
Alignment explanation
Indices: 3877386--3877531 Score: 159
Period size: 45 Copynumber: 3.2 Consensus size: 45
3877376 GCCTCGACCG
**
3877386 CCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTCGACCA
1 CCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTTAACCA
* * * * *
3877431 CCATCGGTACAAGATGGCCCCTGGTGTGGGTGGTTGCATTGAA-CA
1 CCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTT-AACCA
* * * **
3877476 CCATTGGCACATGCTGGGCCATGGTGCAGGCGGTTGCCTTAACCA
1 CCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTTAACCA
*
3877521 CTATCGGCACA
1 CCATCGGCACA
3877532 TGTCGAGCCT
Statistics
Matches: 80, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
44 2 0.03
45 77 0.96
46 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTTAACCA
Found at i:3878026 original size:26 final size:25
Alignment explanation
Indices: 3877988--3878064 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
3877978 GATCTGATCT
*
3877988 TAGACTGGAAATGAACTTCGTATGCA
1 TAGACTGGGAATGAAC-TCGTATGCA
* * *
3878014 TAGACTGGGAATGAACACCGCATGCT
1 TAGACTGGGAATGAAC-TCGTATGCA
* *
3878040 TAGGCTGGGAATAAACTCTGTATGC
1 TAGACTGGGAATGAACTC-GTATGC
3878065 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 1 0.02
26 40 0.98
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCGTATGCA
Found at i:3878403 original size:26 final size:26
Alignment explanation
Indices: 3878367--3878419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3878357 CTGGTCTGAT
3878367 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3878393 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3878419 C
1 C
3878420 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3881074 original size:45 final size:44
Alignment explanation
Indices: 3881008--3881176 Score: 144
Period size: 45 Copynumber: 3.8 Consensus size: 44
3880998 GCACAAGTTG
* * * * *
3881008 GGCCCTGGTGCAGGCGGTTGCCTTGATCACCATCGGCAAATGCC
1 GGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCAAATGCT
* * *
3881052 GGCCCTTGGTGCGGGTGATTGCCTCGACCACTATCGGCATAA-GAT
1 GGCCC-TGGTGCGGGCGATTGCCTCGACCACCATCGGCA-AATGCT
* * * * * *
3881097 GGCCCCTGGTGCGGGTGGTTGCATCGAACACCATTGGCACATGCT
1 GG-CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCAAATGCT
* *
3881142 GGGCCAT-GTGCGGGCAATTGCCTCGACCACCATCG
1 -GGCCCTGGTGCGGGCGATTGCCTCGACCACCATCG
3881177 ACACATGTCG
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
44 28 0.29
45 63 0.64
46 7 0.07
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (44 bp):
GGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCAAATGCT
Found at i:3881169 original size:89 final size:90
Alignment explanation
Indices: 3880983--3881176 Score: 210
Period size: 90 Copynumber: 2.2 Consensus size: 90
3880973 CGAGCACTTA
** * * * * * * *
3880983 CCTCGACTGCCATTGGCACAAGTTGGGCCCTGGTGCAGGCGGTTGCCTTGATCACCATCGGCAAA
1 CCTCGACCACCATCGGCATAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGGCAAA
* **
3881048 TGCCGGCCCTTGGTGCGGGTGATTG
66 TGCCGGCCCATGGTGCGGGCAATTG
* * * * *
3881073 CCTCGACCACTATCGGCATAAGATGGCCCCTGGTGCGGGTGGTTGCATCGAACACCATTGGCACA
1 CCTCGACCACCATCGGCATAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGGCAAA
* *
3881138 TGCTGGGCCAT-GTGCGGGCAATTG
66 TGCCGGCCCATGGTGCGGGCAATTG
3881162 CCTCGACCACCATCG
1 CCTCGACCACCATCG
3881177 ACACATGTCG
Statistics
Matches: 84, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
89 25 0.30
90 59 0.70
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (90 bp):
CCTCGACCACCATCGGCATAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGGCAAA
TGCCGGCCCATGGTGCGGGCAATTG
Found at i:3881537 original size:26 final size:26
Alignment explanation
Indices: 3881501--3881553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3881491 CTTGTCCGAT
3881501 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
3881527 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
3881553 C
1 C
3881554 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:3882561 original size:45 final size:45
Alignment explanation
Indices: 3882495--3882662 Score: 137
Period size: 45 Copynumber: 3.7 Consensus size: 45
3882485 GGTCGAGCAC
* *
3882495 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
* * * * * *
3882540 TTGCCTCAACCACCATTGGCACAAGATGGCCCCTGGTGTGGGCAG
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
* *
3882585 TTGCGTCGAA-CACCATCGGCACATA-CTGGG--CTACGGTGCAGGCGG
1 TTGCCTC-AACCACCATCGGCACA-AGCTGGGCCCTA--GTGCGGGCGG
* * * * *
3882630 TTGTCTCGACCACCATCGACACATGCTGAGCCC
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCC
3882663 CGATCGACAC
Statistics
Matches: 93, Mismatches: 22, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 86 0.92
46 3 0.03
47 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
Found at i:3883457 original size:26 final size:26
Alignment explanation
Indices: 3883428--3883480 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3883418 CCGGTCCAAT
3883428 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3883454 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3883480 C
1 C
3883481 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3887119 original size:26 final size:26
Alignment explanation
Indices: 3887078--3887130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3887068 CCAGTCAGAT
3887078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3887104 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
3887130 C
1 C
3887131 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3889338 original size:45 final size:45
Alignment explanation
Indices: 3889255--3889408 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 45
3889245 GTACAGGCAC
* * * *
3889255 TTGCCTCGACCGCCATTGGCATAAGCTGGGCTCTGGTGCAGGCT-G
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGC-GGCTGG
* * * *
3889300 TTGCCTCGACCACCATCGGCACAAGATGGACCCCGGTGCGGATGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGCTGG
* * * * * *
3889345 TTGCATCGAACACCATCGACACATGCTGGGCCATGGTGTGGCTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGCTGG
*
3889390 TTACCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
3889409 TATCAAACCG
Statistics
Matches: 86, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 3 0.03
45 83 0.97
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGCTGG
Found at i:3889669 original size:27 final size:27
Alignment explanation
Indices: 3889634--3889689 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
3889624 ATCCCCCTCT
* *
3889634 GCGTGCTGATGATCAATCGATCGGAGA
1 GCGTACTGATGATCAACCGATCGGAGA
3889661 GCGTACTGATGATCAACCGATCGGAGA
1 GCGTACTGATGATCAACCGATCGGAGA
3889688 GC
1 GC
3889690 CAAAATATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.20
Consensus pattern (27 bp):
GCGTACTGATGATCAACCGATCGGAGA
Found at i:3890231 original size:45 final size:45
Alignment explanation
Indices: 3890182--3890338 Score: 199
Period size: 45 Copynumber: 3.5 Consensus size: 45
3890172 GTACAAGCAC
* * *
3890182 TTGCCTCGACCGCCATTGGCACAAGCTGGGCCCTAGTGCGGACTG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGACTG
* * *
3890227 TTGCCTCGACCACCATCGGCACAAGATGGACCCTGGTGCGGACGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGACTG
* * * *
3890272 TTGCGTCGAACACCATCGGCACATGCTGGGCCATGGTGCGG-CTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGACT-G
*
3890317 TTACCTCGACCACCATCGGCAC
1 TTGCCTCGACCACCATCGGCAC
3890339 CGAACCGACT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 1 0.01
45 94 0.99
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGACTG
Found at i:3890781 original size:26 final size:26
Alignment explanation
Indices: 3890752--3890804 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3890742 TCGGTCCGAT
3890752 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
3890778 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
3890804 C
1 C
3890805 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:3891065 original size:158 final size:158
Alignment explanation
Indices: 3890777--3891070 Score: 342
Period size: 158 Copynumber: 1.9 Consensus size: 158
3890767 AACTCCGTAT
* * * * *
3890777 GCTTAGAATGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGCCGTTGAG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGCCGCTCAG
* * * * ** **
3890842 CCGATCGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCC
66 CCGACCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCCATCGATCC
*
3890907 TGCTGCCACAACCCTCGGTCTGGTTAGG
131 TACTGCCACAACCCTCGGTCTGGTTAGG
* * **
3890935 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGCCGCTCA
* * * *
3890999 GTCGGCCAGAGAGGTAGAATGCGCAAGCC-GAGGATCGACCTGATCCCCC-CTACGTGCCATCGA
65 GCCGACC-GAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCTCTACGTGCCATCGA
3891062 TCCTACTGC
128 TCCTACTGC
3891071 TGGTCCTACT
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 75 0.68
159 36 0.32
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGCCGCTCAG
CCGACCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCCATCGATCC
TACTGCCACAACCCTCGGTCTGGTTAGG
Found at i:3892997 original size:26 final size:26
Alignment explanation
Indices: 3892968--3893020 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3892958 CCGATCCAAT
* *
3892968 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
3892994 CTTACACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3893020 C
1 C
3893021 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:3894085 original size:45 final size:43
Alignment explanation
Indices: 3893991--3894167 Score: 149
Period size: 45 Copynumber: 4.0 Consensus size: 43
3893981 GCACAAGCTA
** * *
3893991 GGCCCTGGTGTGGGTGGTTGCCTCGATCACCATCGACACATGT
1 GGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGACACATGT
* * *
3894034 CAGCCCTTGGTGCAGGCGATTGCCTCGACCACCATCGACACAAGAT
1 -GGCCC-TGGTGCAGGCGGTTGCCTCGACCACCATCGACACATG-T
* * ** * *
3894080 GGCCCTGCTGCAGACGGTTGTATCGAACACCATC-AGCACATCCT
1 GGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGA-CACAT-GT
* * *
3894124 GGGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGT
1 -GGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGACACATGT
3894168 CAAGCCCCGA
Statistics
Matches: 102, Mismatches: 25, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
43 1 0.01
44 33 0.32
45 67 0.66
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (43 bp):
GGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGACACATGT
Found at i:3894646 original size:26 final size:26
Alignment explanation
Indices: 3894617--3894669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3894607 CCTGTCTGAT
*
3894617 CTTAGACT-GGTAATGAACTCTGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
3894643 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3894669 C
1 C
3894670 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3895557 original size:45 final size:45
Alignment explanation
Indices: 3895496--3895650 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 45
3895486 TAATGCGAGC
* * * *
3895496 GGTTGCCTTGATCACCATCGGCACATGCCAGCCCTTGGTGCGGGT
1 GGTTGCCTCGACCACCATCGGCACATGCCGGCCCCTGGTGCGGGT
* * ** * *
3895541 GATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTGGGC
1 GGTTGCCTCGACCACCATCGGCACATGCCGGCCCCTGGTGCGGGT
* * * ** * *
3895586 GGTTGCATCGAACACCATCAGCACATGCCGGGTCGTGGTGCGGAT
1 GGTTGCCTCGACCACCATCGGCACATGCCGGCCCCTGGTGCGGGT
*
3895631 GGTTGCCTTGACCACCATCG
1 GGTTGCCTCGACCACCATCG
3895651 ACATATGTCG
Statistics
Matches: 83, Mismatches: 27, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (45 bp):
GGTTGCCTCGACCACCATCGGCACATGCCGGCCCCTGGTGCGGGT
Found at i:3896344 original size:26 final size:26
Alignment explanation
Indices: 3896294--3896346 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3896284 TCGGTCTGAT
* **
3896294 CTTAGATTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
3896320 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3896346 C
1 C
3896347 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3897254 original size:45 final size:45
Alignment explanation
Indices: 3897167--3897296 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
3897157 GCATGGTGAT
* * * *
3897167 GGCACATGCATCGACCATCATCGGCACAGGCT--GCCCTTTGGTATG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCC--TGGTATG
3897212 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTATG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTATG
* ** * * *
3897257 AGCGGTTGTCTCGACCACCATCGGCACAAGATGGCCCCTG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTG
3897297 ATACGAGCGG
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 69 0.95
47 4 0.05
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (45 bp):
GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTATG
Found at i:3897305 original size:45 final size:45
Alignment explanation
Indices: 3897221--3897309 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
3897211 GGGCACTTGC
* * * *
3897221 CTCGACCACCATCGGCACAAGCTGGGCCCTGGTATGAGCGGTTGT
1 CTCGACCACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTGT
3897266 CTCGACCACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTG
1 CTCGACCACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTG
3897310 CATCAAACAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (45 bp):
CTCGACCACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTGT
Found at i:3897326 original size:45 final size:45
Alignment explanation
Indices: 3897227--3897329 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 45
3897217 TTGCCTCGAC
* * * * * *
3897227 CACCATCGGCACAAGCTGGGCCCTGGTATGAGCGGTTGTCTCGAC
1 CACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTGTCTCAAA
3897272 CACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTG-CATCAAA
1 CACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTGTC-TCAAA
*
3897317 CACCTTCGGCACA
1 CACCATCGGCACA
3897330 TGCTGGGCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 49 0.98
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.17
Consensus pattern (45 bp):
CACCATCGGCACAAGATGGCCCCTGATACGAGCGGTTGTCTCAAA
Found at i:3899031 original size:13 final size:13
Alignment explanation
Indices: 3899013--3899050 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
3899003 CAATGGCACA
*
3899013 TGATGGCGCATGG
1 TGATGGCACATGG
3899026 TGATGGCACATGG
1 TGATGGCACATGG
3899039 TGATGGCACATG
1 TGATGGCACATG
3899051 CATCAACCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.16, G:0.39, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3905667 original size:26 final size:26
Alignment explanation
Indices: 3905631--3905683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3905621 CAGGTACAAT
*
3905631 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3905657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3905683 C
1 C
3905684 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3906792 original size:45 final size:45
Alignment explanation
Indices: 3906743--3906883 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 45
3906733 CACCTACCTA
* * *
3906743 GACCACCATCGGCACAAGCTGGGCCTTAGTGTGGGTGGTTGCCTC
1 GACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
* * * * * *
3906788 GACCACCATCGACACAAGATAGCCCCTGGTGTGGGCAGTTGCATC
1 GACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
* * * * * *
3906833 GAACATCATCGGCACATGCTGGGCCGTGGTGTGGGCGGTTTCCTT
1 GACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
3906878 GACCAC
1 GACCAC
3906884 AATCAGTACA
Statistics
Matches: 73, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
GACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTC
Found at i:3907736 original size:26 final size:26
Alignment explanation
Indices: 3907700--3907752 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3907690 CCAGTCCGAT
3907700 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
3907726 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3907752 C
1 C
3907753 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3907931 original size:45 final size:45
Alignment explanation
Indices: 3907839--3907933 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
3907829 AGGCTGCCAT
* ** *
3907839 TTGGTACGAGCACTTGCCTCGACCACTATCGGCACAAGCTGGGCC
1 TTGGTACGAGCACTTGCCTCGACCACCATCGGCACAAAATGGCCC
* *
3907884 TTGGTACGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCC
1 TTGGTACGAGCACTTGCCTCGACCACCATCGGCACAAAATGGCCC
3907929 TTGGT
1 TTGGT
3907934 GTAAGCGGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (45 bp):
TTGGTACGAGCACTTGCCTCGACCACCATCGGCACAAAATGGCCC
Found at i:3907945 original size:45 final size:45
Alignment explanation
Indices: 3907839--3907964 Score: 126
Period size: 45 Copynumber: 2.8 Consensus size: 45
3907829 AGGCTGCCAT
* * * ** *
3907839 TTGGTACGAGCACTTGCCTCGACCACTATCGGCACAAGCTGGGCC
1 TTGGTACAAGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCC
**
3907884 TTGGTACGGGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCC
1 TTGGTACAAGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCC
** * * * *
3907929 TTGGTGTAAGCGGTTGCATTGAACACCATCGGCACA
1 TTGGTACAAGCAGTTGCCTCGACCACCATCGGCACA
3907965 TGCTGGGCTA
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (45 bp):
TTGGTACAAGCAGTTGCCTCGACCACCATCGGCACAAAATGGCCC
Found at i:3909013 original size:26 final size:25
Alignment explanation
Indices: 3908978--3909029 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
3908968 ATCGTCTGAT
* *
3908978 CTTAGCTGGGAATGAACTCCATATG
1 CTTAGCTGGGAATAAACACCATATG
*
3909003 CTTAGGCTGGGACTAAACACCATATG
1 CTTA-GCTGGGAATAAACACCATATG
3909029 C
1 C
3909030 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
CTTAGCTGGGAATAAACACCATATG
Found at i:3909535 original size:45 final size:45
Alignment explanation
Indices: 3909486--3909633 Score: 172
Period size: 45 Copynumber: 3.3 Consensus size: 45
3909476 GGGGCACTTA
* * * *
3909486 CCTCGACCGCCATCGGCATAAGCTGGGCCCTGGTGCGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGGTTG
*
3909531 CCTCGACCACCATCGGCACAAGAT-GGCCCTTGGTGTAGGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCAGGCGGTTG
* * * * * *
3909576 CATCGAACACCATCGGCACATGTTGGGCCATGGTGCAAGCGGTTG
1 CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGGTTG
*
3909621 CCTCAACCACCAT
1 CCTCGACCACCAT
3909634 GACACATGTC
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 5 0.06
45 77 0.90
46 4 0.05
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGGTTG
Found at i:3910134 original size:26 final size:26
Alignment explanation
Indices: 3910094--3910146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3910084 TCGGTCTGAT
* *
3910094 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
*
3910120 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
3910146 C
1 C
3910147 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:3910319 original size:25 final size:26
Alignment explanation
Indices: 3910291--3910342 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3910281 CCGGTCCAAT
3910291 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3910316 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3910342 C
1 C
3910343 CTCAACCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3911222 original size:26 final size:26
Alignment explanation
Indices: 3911171--3911223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3911161 CCGATCCGAT
**
3911171 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3911197 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
3911223 C
1 C
3911224 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3912888 original size:26 final size:26
Alignment explanation
Indices: 3912859--3912922 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
3912849 TCCTGCTGCT
*
3912859 ACTGGGAATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
3912885 ACTGGGGATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
3912911 ACTGGGGATGAA
1 ACTGGGGATGAA
3912923 AAGAACGTGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (26 bp):
ACTGGGGATGAACTCCGTATGCTTAG
Found at i:3913900 original size:45 final size:45
Alignment explanation
Indices: 3913808--3913910 Score: 109
Period size: 45 Copynumber: 2.3 Consensus size: 45
3913798 GGCACATGCA
* *
3913808 TCGACCATCATCGACACAGGCTGCCCTTTGGTACGGGCACTTACC
1 TCGACCACCATCGACACAAGCTGCCCTTTGGTACGGGCACTTACC
* * * * * *
3913853 TCGACCGCCATCGACACAAGCTGGGCC-TTGGTGCGGGTAGTTGCC
1 TCGACCACCATCGACACAAGCT-GCCCTTTGGTACGGGCACTTACC
*
3913898 TCGATCACCATCG
1 TCGACCACCATCG
3913911 GTACCTGCTA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
45 44 0.94
46 3 0.06
ACGTcount: A:0.18, C:0.34, G:0.26, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGACACAAGCTGCCCTTTGGTACGGGCACTTACC
Found at i:3913973 original size:20 final size:20
Alignment explanation
Indices: 3913948--3914008 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
3913938 TTACCTCAAG
*
3913948 CACCATCGACACAAGATGGC
1 CACCATCGGCACAAGATGGC
*
3913968 CACCATCGGCATAAGATGGC
1 CACCATCGGCACAAGATGGC
3913988 CACCATCGGCACAAGATGGC
1 CACCATCGGCACAAGATGGC
3914008 C
1 C
3914009 CCTGGTGCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (20 bp):
CACCATCGGCACAAGATGGC
Found at i:3914903 original size:26 final size:26
Alignment explanation
Indices: 3914865--3914917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3914855 CCGATCCGAT
*
3914865 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
3914891 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3914917 C
1 C
3914918 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3916436 original size:26 final size:26
Alignment explanation
Indices: 3916384--3916436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3916374 CCGATCTGAT
* *
3916384 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
*
3916410 CTTAGACTAGGAATGAACTTTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
3916436 C
1 C
3916437 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:3916782 original size:26 final size:26
Alignment explanation
Indices: 3916731--3916782 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3916721 CTGGTCTGAT
**
3916731 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3916757 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3916783 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3918410 original size:13 final size:13
Alignment explanation
Indices: 3918392--3918416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3918382 CAATGGCACA
3918392 TGATGGCACATGG
1 TGATGGCACATGG
3918405 TGATGGCACATG
1 TGATGGCACATG
3918417 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3919249 original size:26 final size:26
Alignment explanation
Indices: 3919205--3919257 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3919195 CCGGCTCGAT
*
3919205 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
3919231 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3919257 C
1 C
3919258 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3920178 original size:45 final size:45
Alignment explanation
Indices: 3920019--3920176 Score: 235
Period size: 45 Copynumber: 3.5 Consensus size: 45
3920009 GTACGGGCAC
*
3920019 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * *
3920064 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
3920109 TTGCATCGAACACCATCGGCACATGCTGGGACGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
3920154 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3920177 TGTCGAGCCC
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 99 1.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:3920749 original size:159 final size:158
Alignment explanation
Indices: 3920498--3920791 Score: 385
Period size: 159 Copynumber: 1.9 Consensus size: 158
3920488 AACTCCGTTT
* * * * *
3920498 GCTTAGACTAGGAATAAACTTCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCACTGAG
1 GCTTAGACTAGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAA
* * * * *
3920563 CCGGTCGAAGAGGTATAATGCGTAAGCCGGGGATC-GACCCGGTCCCCCTCTACGTGCTGTCGGT
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCAG-CCCGGTCCCCC-CTACGTGCTGTCGAT
3920627 CCTGCTGCCATAACCCTCGGTCCAGTTGGG
129 CCTGCTGCCATAACCCTCGGTCCAGTTGGG
* * **
3920657 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGTGCTCA
1 GCTTAGACTA-GGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCA
* * * *
3920721 ACCGGCCGGAGAGGTAGAATGTGCAAGCCATGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATC
65 ACCGGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATC
3920786 CTGCTG
130 CTGCTG
3920792 TCGCAACCCT
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
158 22 0.19
159 92 0.80
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTAGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAA
CCGGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCATAACCCTCGGTCCAGTTGGG
Found at i:3921904 original size:45 final size:45
Alignment explanation
Indices: 3921771--3922022 Score: 154
Period size: 45 Copynumber: 5.6 Consensus size: 45
3921761 GGCACATGCA
* * ** *
3921771 TCGACCATCATCGGCACA-GGCTACCCTTTGGTACGGGC-AGTTGCC
1 TCGACCACCATCGGCACATGCCGGCCC-TTGGTGCGGGCGA-TTGCC
** * * * *
3921816 TCGACTGCCATCGACACAAGCTGGGCCC--GGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACATGC-CGGCCCTTGGTGCGGGCGATTGCC
* * ** *
3921860 TTGATCACCATTAGCACATGCCGGCCCTTGGTGCGAGCGATTGCC
1 TCGACCACCATCGGCACATGCCGGCCCTTGGTGCGGGCGATTGCC
**** * * *
3921905 TCGACCACCATCGGCACAAAATGGCCCCTGGTGCGGGCGGTTGCA
1 TCGACCACCATCGGCACATGCCGGCCCTTGGTGCGGGCGATTGCC
** * * *
3921950 TCGAATACCATCGGCACATGCTGG-GCTGTGGTACGGGCGATTGCC
1 TCGACCACCATCGGCACATGCCGGCCCT-TGGTGCGGGCGATTGCC
* *
3921995 TTGACCACCATTGGCACATGCCGAGCCC
1 TCGACCACCATCGGCACATGCCG-GCCC
3922023 CGGTTGACCC
Statistics
Matches: 150, Mismatches: 49, Indels: 14
0.70 0.23 0.07
Matches are distributed among these distances:
43 5 0.03
44 27 0.18
45 112 0.75
46 2 0.01
47 4 0.03
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGCCGGCCCTTGGTGCGGGCGATTGCC
Found at i:3921967 original size:90 final size:89
Alignment explanation
Indices: 3921811--3922012 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 89
3921801 GTACGGGCAG
** * ** * * * *
3921811 TTGCCTCGACTGCCATCGACACAAGCTGGGCCCGGTGCGGGCGGTTGCCTTGATCACCATTAGCA
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCCGGTGCGGGCGGTTGCATCGATCACCATCAGCA
*
3921876 CATGCCGGCCCT-TGGTGCGAGCGA
66 CATGCCGG-CCTGTGGTACGAGCGA
*
3921900 TTGCCTCGACCACCATCGGCACAAAATGGCCCCTGGTGCGGGCGGTTGCATCGAAT-ACCATCGG
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCC-GGTGCGGGCGGTTGCATCG-ATCACCATCAG
* * *
3921964 CACATGCTGGGCTGTGGTACGGGCGA
64 CACATGCCGGCCTGTGGTACGAGCGA
* *
3921990 TTGCCTTGACCACCATTGGCACA
1 TTGCCTCGACCACCATCGGCACA
3922013 TGCCGAGCCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
89 29 0.31
90 63 0.67
91 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (89 bp):
TTGCCTCGACCACCATCGGCACAAAATGGCCCCGGTGCGGGCGGTTGCATCGATCACCATCAGCA
CATGCCGGCCTGTGGTACGAGCGA
Found at i:3922865 original size:26 final size:26
Alignment explanation
Indices: 3922814--3922866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3922804 TCGGTCTGAT
*
3922814 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3922840 CTTAGACTAGGATTGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3922866 C
1 C
3922867 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3923128 original size:159 final size:159
Alignment explanation
Indices: 3922839--3923149 Score: 376
Period size: 159 Copynumber: 2.0 Consensus size: 159
3922829 AACTCCTTAT
* * * *
3922839 GCTTAGACTAGGATTGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * ***
3922904 TCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCTTTTACGTGCTATCGATC
66 CCGGTAGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTATCGATC
* *
3922969 CCGTTGCCGCAACCCTCGGTCCGGCTAGG
131 CCGCTGCCGCAACCCTCAGTCCGGCTAGG
* *
3922998 GCTTAGAC-ATGGAATGAACTCCATATGGCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCA
* * * * *
3923062 GCCGGCTAG-AGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCCTGCGTGCT-GCTG
65 GCCGG-TAGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTATC-G
* *
3923125 ATCCTGCTGCTGCAACCCTCAGTCC
128 ATCCCGCTGCCGCAACCCTCAGTCC
3923150 AATATGATCT
Statistics
Matches: 127, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 2 0.02
159 123 0.97
160 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCAG
CCGGTAGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTATCGATC
CCGCTGCCGCAACCCTCAGTCCGGCTAGG
Found at i:3923190 original size:26 final size:26
Alignment explanation
Indices: 3923158--3923210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3923148 CCAATATGAT
*
3923158 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3923184 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3923210 C
1 C
3923211 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3930230 original size:45 final size:45
Alignment explanation
Indices: 3930081--3930228 Score: 161
Period size: 45 Copynumber: 3.3 Consensus size: 45
3930071 TTGCTTTGAT
* * *
3930081 CACCATCGGTACAAGCTGGGCCCTAGTGCGGGCGGTTACCTCGAC
1 CACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAC
* * * * * * *
3930126 CACCATCGGCACAAGATGGCCCCTGGTGTGAGCGGTTGCATCAAA
1 CACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAC
** * * *
3930171 CACCATCAACACATGCTGGGCCATGGTGCGGGCGGTCGCCTCGAC
1 CACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAC
3930216 CACCATCGGCACA
1 CACCATCGGCACA
3930229 TGTCGAGCCC
Statistics
Matches: 79, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (45 bp):
CACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAC
Found at i:3931419 original size:136 final size:136
Alignment explanation
Indices: 3931186--3931621 Score: 536
Period size: 136 Copynumber: 3.2 Consensus size: 136
3931176 AGACCAGGAT
* *
3931186 TGAACTCCATAAGCCTAAGTCAACCCACGAAATGAGCGTATGGGCGCTCAGCCGATCGGAGAGGC
1 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGC
* * * *
3931251 AAGATGCGCAAGCTGAGGATCAG-CCTGATCCCCCTCCACATGCTGCTGCCGGTCCAATCTTAGA
66 AAGATGCGCAAGCTGAGGATCAGCCCAG-TCCCCCTCTACGTGCTGCTGCCGGTCCGATCTTAGA
3931315 CTGGGAA
130 CTGGGAA
* * * * * *
3931322 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTCAGCCGGTCGGAGAGAC
1 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGC
* ** * * *
3931387 AGGATGCGCAAG-TCGAGGATTGGCCCAGTCCCCCTCTACGTGCTACTGTCGGTTCGATCTTAGA
66 AAGATGCGCAAGCT-GAGGATCAGCCCAGTCCCCCTCTACGTGCTGCTGCCGGTCCGATCTTAGA
3931451 CTGGGAA
130 CTGGGAA
* * * * *
3931458 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCACTCAGCCGATCGAAGCGGC
1 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGC
*** * **
3931523 AAGATGCGCAAGCTGAGGATCCA-CTTGGTCCCCCTCTACGTGCTGCTACTAGTCCGATCTTAGA
66 AAGATGCGCAAGCTGAGGAT-CAGCCCAGTCCCCCTCTACGTGCTGCTGCCGGTCCGATCTTAGA
* *
3931587 ATGGGGA
130 CTGGGAA
*
3931594 TGAACTCCGTATGCCTAAGTCAACCCAC
1 TGAACTCCATATGCCTAAGTCAACCCAC
3931622 AAAATAAACT
Statistics
Matches: 252, Mismatches: 44, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
135 1 0.00
136 247 0.98
137 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (136 bp):
TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGC
AAGATGCGCAAGCTGAGGATCAGCCCAGTCCCCCTCTACGTGCTGCTGCCGGTCCGATCTTAGAC
TGGGAA
Found at i:3931755 original size:45 final size:45
Alignment explanation
Indices: 3931691--3931844 Score: 184
Period size: 45 Copynumber: 3.4 Consensus size: 45
3931681 GTATGGGCAC
* *
3931691 TTGCCTCGACCTCCATCGGCACAAGCTGGGCTGTGGTGCTGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCGTGGTGCTGGCGG
* * * * *
3931736 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCGTGGTGCTGGCGG
* * *
3931781 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTG-TAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCGTGGTGCT-GGCGG
* *
3931826 TTGCCTCAACCACTATCGG
1 TTGCCTCGACCACCATCGG
3931845 TACATGCCGA
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCGTGGTGCTGGCGG
Found at i:3932332 original size:26 final size:26
Alignment explanation
Indices: 3932303--3932355 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3932293 CCAGTCTGAT
*
3932303 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3932329 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3932355 C
1 C
3932356 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3933292 original size:45 final size:43
Alignment explanation
Indices: 3933233--3933385 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 43
3933223 GGCACAAGCA
* * * *
3933233 TCGACCATCGTCGGCATAGGCTGCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAGGCTGCCC-TTGGTGCGGGCA-TTGCC
*
3933278 TCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCAGTTGCC
1 TCGACCACCATCGGCACAGGCT--GCCCTTGGTGCGGGCA-TTGCC
* * * * *
3933323 TCAATCACCATCGGCACATGCCGGCCCTTGGTGCGGGTGATTGCC
1 TCGACCACCATCGGCACA-GGCTGCCCTTGGTGCGGG-CATTGCC
*
3933368 TCGACCACCATTGGCACA
1 TCGACCACCATCGGCACA
3933386 AAATGGCCCC
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
44 4 0.05
45 78 0.89
46 2 0.02
47 4 0.05
ACGTcount: A:0.16, C:0.35, G:0.29, T:0.20
Consensus pattern (43 bp):
TCGACCACCATCGGCACAGGCTGCCCTTGGTGCGGGCATTGCC
Found at i:3933394 original size:45 final size:44
Alignment explanation
Indices: 3933261--3933475 Score: 162
Period size: 45 Copynumber: 4.8 Consensus size: 44
3933251 GGCTGCCCTT
* *
3933261 TGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGCT-GGCCC
* * * *
3933306 TGGTGCGGGCAGTTGCCTCAATCACCATCGGCACATGCCGGCCC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGCCC
* * **
3933350 TTGGTGCGGG-TGATTGCCTCGACCACCATTGGCACAAAATGGCCCC
1 -TGGTGCGGGCAG-TTGCCTCGACCACCATCGGCACAAGCTGG-CCC
* * * * * * * * *
3933396 TAGTGCGGACAGTTGCATCGAACACAATTGACACATGCTGGGCCG
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGCT-GGCCC
* * * * *
3933441 TGGTACGAGCGGTTACCTCGACCACCATCTGCACA
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACA
3933476 TGTCGAGCCC
Statistics
Matches: 128, Mismatches: 37, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
44 6 0.05
45 116 0.91
46 6 0.05
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (44 bp):
TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGCCC
Found at i:3933460 original size:90 final size:90
Alignment explanation
Indices: 3933276--3933475 Score: 213
Period size: 90 Copynumber: 2.2 Consensus size: 90
3933266 CGGGCACTTG
** * * * * * *
3933276 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTCAATCACCATCGGCACA
1 CCTCGACCACCATCGGCACAAAATGGCCCCTAGTGCGGACAGTTGCATCAATCACAATCGACACA
* * * * *
3933341 TGCCGGCCCTTGGTGCGGGTGATTG
66 TGCCGGCCCGTGGTACGAGCGATTA
* *
3933366 CCTCGACCACCATTGGCACAAAATGGCCCCTAGTGCGGACAGTTGCATCGAA-CACAATTGACAC
1 CCTCGACCACCATCGGCACAAAATGGCCCCTAGTGCGGACAGTTGCATC-AATCACAATCGACAC
* * *
3933430 ATGCTGGGCCGTGGTACGAGCGGTTA
65 ATGCCGGCCCGTGGTACGAGCGATTA
*
3933456 CCTCGACCACCATCTGCACA
1 CCTCGACCACCATCGGCACA
3933476 TGTCGAGCCC
Statistics
Matches: 89, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 87 0.98
91 2 0.02
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (90 bp):
CCTCGACCACCATCGGCACAAAATGGCCCCTAGTGCGGACAGTTGCATCAATCACAATCGACACA
TGCCGGCCCGTGGTACGAGCGATTA
Found at i:3934154 original size:26 final size:26
Alignment explanation
Indices: 3934113--3934165 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3934103 CCAGTCTGAT
3934113 CTTAGACAGGAAATGAACTTCATATG
1 CTTAGACAGGAAATGAACTTCATATG
* * *
3934139 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACAGGAAATGAACTTCATATG
3934165 C
1 C
3934166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTTCATATG
Found at i:3935265 original size:45 final size:45
Alignment explanation
Indices: 3935106--3935259 Score: 175
Period size: 45 Copynumber: 3.4 Consensus size: 45
3935096 GTATGGGCAC
* * * **
3935106 TTGCCTTGACCGCCATCGGCACAAGTTGGGCCCTGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGTGG
* *
3935151 TTGCCTCGACCACTATCGGCACAAGAT-GGCCCTTGGTACGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGGGTGG
* * * * * *
3935196 TTGCATCGAACACCATCGGCACATGCTGGGTCGTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGTGG
3935241 TTGCCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
3935260 TACATGTCGA
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 5 0.06
45 82 0.91
46 3 0.03
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGTGG
Found at i:3935743 original size:26 final size:26
Alignment explanation
Indices: 3935705--3935757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3935695 TCGGTCTGAT
3935705 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
3935731 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3935757 C
1 C
3935758 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3940149 original size:26 final size:26
Alignment explanation
Indices: 3940120--3940172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3940110 TCGGTCTGAT
*
3940120 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3940146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3940172 C
1 C
3940173 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3941567 original size:45 final size:45
Alignment explanation
Indices: 3941518--3941669 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 45
3941508 TTGCCTTGAT
* * *
3941518 CACCATCGGGACATGTCGGCCCTTGGTGCGAGCGATTGCCTCAAC
1 CACCATCGGCACATGTCGGCCCATGGTGCGAGCGGTTGCCTCAAC
* * * * *
3941563 CACCATTGGCACAAGAT-GGCCCATGGTACGGGCGGTTGCATCGAA-
1 CACCATCGGCACATG-TCGGCCCATGGTGCGAGCGGTTGCCTC-AAC
* * * *
3941608 CACCATTGACACATG-CTGGGCCGTGGTGCGAGCGGTTGCCTCAAC
1 CACCATCGGCACATGTC-GGCCCATGGTGCGAGCGGTTGCCTCAAC
3941653 CACCATCGGCACATGTC
1 CACCATCGGCACATGTC
3941670 AAGCCCCGAT
Statistics
Matches: 84, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
44 2 0.02
45 78 0.93
46 4 0.05
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (45 bp):
CACCATCGGCACATGTCGGCCCATGGTGCGAGCGGTTGCCTCAAC
Found at i:3941595 original size:90 final size:90
Alignment explanation
Indices: 3941463--3941665 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 90
3941453 GTACGGGCAC
* * * * * * * * **
3941463 TTGCCTCAGCCGCCATTGGCACAAGCTAGGCTCTGGTGCGGGCAGTTGCCTTGATCACCATCGGG
1 TTGCCTCAACCACCATTGGCACAAGATAGGCCCTGGTACGGGCAGTTGCATCGAACACCATCGAC
*
3941528 ACATG-TCGGCCCTTGGTGCGAGCGA
66 ACATGCT-GGCCCGTGGTGCGAGCGA
* *
3941553 TTGCCTCAACCACCATTGGCACAAGAT-GGCCCATGGTACGGGCGGTTGCATCGAACACCATTGA
1 TTGCCTCAACCACCATTGGCACAAGATAGGCCC-TGGTACGGGCAGTTGCATCGAACACCATCGA
* *
3941617 CACATGCTGGGCCGTGGTGCGAGCGG
65 CACATGCTGGCCCGTGGTGCGAGCGA
*
3941643 TTGCCTCAACCACCATCGGCACA
1 TTGCCTCAACCACCATTGGCACA
3941666 TGTCAAGCCC
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
89 4 0.04
90 90 0.95
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCAACCACCATTGGCACAAGATAGGCCCTGGTACGGGCAGTTGCATCGAACACCATCGAC
ACATGCTGGCCCGTGGTGCGAGCGA
Found at i:3942135 original size:25 final size:26
Alignment explanation
Indices: 3942107--3942158 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
3942097 TTGGTCCGAT
*
3942107 CTTAGACTGGGAATGAA-TCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3942132 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3942158 C
1 C
3942159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3942420 original size:159 final size:159
Alignment explanation
Indices: 3942131--3942476 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 159
3942121 GAATCCGTAT
* * * *
3942131 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGTACTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGGGGGCACTCAG
* * ** * * * **
3942196 CCGGCTGGAGAGGCATAATGTGCAAGCCAGGGATCAGTCCGGTCCTCCTCTACGTGCTGTCGATC
66 CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTCCGATCCCCCCCTACGTGCCATCGATC
3942261 CCGCTGCCACAACTCTCGGTCTGGCTGGG
131 CCGCTGCCACAACTCTCGGTCTGGCTGGG
*
3942290 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCG-GGCGGGCACTC
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGG-GGGCACTC
*
3942353 AGCCGACTGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CTCGATCCCCCCCTACGTGCCATCG
64 AGCCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTC-CGATCCCCCCCTACGTGCCATCG
* *** * *
3942417 ATCCTGCTGTTGCAACTTTCGGTCTGGTCT-GA
128 ATCCCGCTGCCACAACTCTCGGTCTGG-CTGGG
* * *
3942449 TCATAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
3942477 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
158 4 0.03
159 151 0.96
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGGGGGCACTCAG
CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTCCGATCCCCCCCTACGTGCCATCGATC
CCGCTGCCACAACTCTCGGTCTGGCTGGG
Found at i:3942491 original size:26 final size:26
Alignment explanation
Indices: 3942452--3942502 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3942442 GGTCTGATCA
3942452 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
3942478 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
3942503 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:3943534 original size:26 final size:25
Alignment explanation
Indices: 3943493--3943542 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
3943483 TGGTTCGATA
*
3943493 TTAGACTGGAATGAACTCTGTATGC
1 TTAGACTGGAATGAACTCCGTATGC
3943518 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACT-GGAATGAACTCCGTATG
3943543 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:3943875 original size:26 final size:27
Alignment explanation
Indices: 3943846--3943899 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
3943836 CCGGTCTGAT
3943846 CTTAGACT-GGGAATGAACTCCG-TATG
1 CTTAGACTAGGG-ATGAACTCCGTTATG
3943872 CTTAGACTAGGGATGAACTCCGTTATG
1 CTTAGACTAGGGATGAACTCCGTTATG
3943899 C
1 C
3943900 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGGATGAACTCCGTTATG
Found at i:3944953 original size:45 final size:46
Alignment explanation
Indices: 3944855--3944956 Score: 136
Period size: 45 Copynumber: 2.2 Consensus size: 46
3944845 GCCTTGACTG
* * **
3944855 CCATCGACACAAGCTGGGCCCTGGTGTGGGCAGGTTACCTCGACCA
1 CCATCGGCACAAGATGACCCCTGGTGTGGGCAGGTTACCTCGACCA
*
3944901 CCATCGGCACAAGATGACCCCTGGTGT-GG-ATGGTTCCCTCGACCA
1 CCATCGGCACAAGATGACCCCTGGTGTGGGCA-GGTTACCTCGACCA
3944946 CCATCGGCACA
1 CCATCGGCACA
3944957 TGCTGGGGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.02
45 26 0.52
46 23 0.46
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (46 bp):
CCATCGGCACAAGATGACCCCTGGTGTGGGCAGGTTACCTCGACCA
Found at i:3946063 original size:45 final size:45
Alignment explanation
Indices: 3946014--3946119 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
3946004 TACGAGCACC
* ** *
3946014 TGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGTGGT
1 TGCCTCGACCACCATCGGCACAAGATGACCCCTGGTGTGGGCGGT
3946059 TGCCTCGACCACCAAT-GGCACAAGATGACCCCTGGTGTGGGCGGT
1 TGCCTCGACCACC-ATCGGCACAAGATGACCCCTGGTGTGGGCGGT
* *
3946104 TGCATCGAACACCATC
1 TGCCTCGACCACCATC
3946120 AACACATGCC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.04
45 49 0.92
46 2 0.04
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
TGCCTCGACCACCATCGGCACAAGATGACCCCTGGTGTGGGCGGT
Found at i:3951332 original size:25 final size:26
Alignment explanation
Indices: 3951289--3951340 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
3951279 TCGGTCTGAT
*
3951289 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3951315 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3951340 C
1 C
3951341 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3952737 original size:45 final size:45
Alignment explanation
Indices: 3952688--3952839 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 45
3952678 TTGCCTTGAT
* * *
3952688 CACCATCGGGACATGTCGGCCCTTGGTGCGAGCGATTGCCTCAAC
1 CACCATCGGCACATGTCGGCCCATGGTGCGAGCGGTTGCCTCAAC
* * * * *
3952733 CACCATTGGCACAAGAT-GGCCCATGGTACGGGCGGTTGCATCGAA-
1 CACCATCGGCACATG-TCGGCCCATGGTGCGAGCGGTTGCCTC-AAC
* * * *
3952778 CACCATTGACACATG-CTGGGCCGTGGTGCGAGCGGTTGCCTCAAC
1 CACCATCGGCACATGTC-GGCCCATGGTGCGAGCGGTTGCCTCAAC
3952823 CACCATCGGCACATGTC
1 CACCATCGGCACATGTC
3952840 AAGCCCCGAT
Statistics
Matches: 84, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
44 2 0.02
45 78 0.93
46 4 0.05
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (45 bp):
CACCATCGGCACATGTCGGCCCATGGTGCGAGCGGTTGCCTCAAC
Found at i:3952765 original size:90 final size:90
Alignment explanation
Indices: 3952633--3952835 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 90
3952623 GTACGGGCAC
* * * * * * * * **
3952633 TTGCCTCAGCCGCCATTGGCACAAGCTAGGCTCTGGTGCGGGCAGTTGCCTTGATCACCATCGGG
1 TTGCCTCAACCACCATTGGCACAAGATAGGCCCTGGTACGGGCAGTTGCATCGAACACCATCGAC
*
3952698 ACATG-TCGGCCCTTGGTGCGAGCGA
66 ACATGCT-GGCCCGTGGTGCGAGCGA
* *
3952723 TTGCCTCAACCACCATTGGCACAAGAT-GGCCCATGGTACGGGCGGTTGCATCGAACACCATTGA
1 TTGCCTCAACCACCATTGGCACAAGATAGGCCC-TGGTACGGGCAGTTGCATCGAACACCATCGA
* *
3952787 CACATGCTGGGCCGTGGTGCGAGCGG
65 CACATGCTGGCCCGTGGTGCGAGCGA
*
3952813 TTGCCTCAACCACCATCGGCACA
1 TTGCCTCAACCACCATTGGCACA
3952836 TGTCAAGCCC
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
89 4 0.04
90 90 0.95
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCAACCACCATTGGCACAAGATAGGCCCTGGTACGGGCAGTTGCATCGAACACCATCGAC
ACATGCTGGCCCGTGGTGCGAGCGA
Found at i:3953307 original size:25 final size:26
Alignment explanation
Indices: 3953279--3953330 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
3953269 TTGGTCCGAT
*
3953279 CTTAGACTGGGAATGAA-TCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3953304 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3953330 C
1 C
3953331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3953592 original size:159 final size:159
Alignment explanation
Indices: 3953303--3953648 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 159
3953293 GAATCCGTAT
* * * *
3953303 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGTACTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGGGGGCACTCAG
* * ** * * **
3953368 CCGGCTGGAGAGGCATAATGTGCAAGCCAGGGATCAGTCCGATCCTCCTCTACGTGCTGTCGATC
66 CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTCCGATCCCCCCCTACGTGCCATCGATC
3953433 CCGCTACCACAACTCTCGGTCTGGCTGGG
131 CCGCTACCACAACTCTCGGTCTGGCTGGG
*
3953462 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCG-GGCGGGCACTC
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGG-GGGCACTC
*
3953525 AGCCGACTGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CTCGATCCCCCCCTACGTGCCATCG
64 AGCCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTC-CGATCCCCCCCTACGTGCCATCG
* **** * *
3953589 ATCCTGCTGTTGCAACTTTCGGTCTGGTCT-GA
128 ATCCCGCTACCACAACTCTCGGTCTGG-CTGGG
* * *
3953621 TCATAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
3953649 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
158 4 0.03
159 151 0.96
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGGGGGCACTCAG
CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGTCCGATCCCCCCCTACGTGCCATCGATC
CCGCTACCACAACTCTCGGTCTGGCTGGG
Found at i:3953663 original size:26 final size:26
Alignment explanation
Indices: 3953624--3953674 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3953614 GGTCTGATCA
3953624 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
3953650 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
3953675 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:3954706 original size:26 final size:25
Alignment explanation
Indices: 3954665--3954714 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
3954655 TGGTTCGATA
*
3954665 TTAGACTGGAATGAACTCTGTATGC
1 TTAGACTGGAATGAACTCCGTATGC
3954690 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACT-GGAATGAACTCCGTATG
3954715 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:3955043 original size:26 final size:26
Alignment explanation
Indices: 3955014--3955066 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3955004 CCGGTCTGAT
3955014 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
3955040 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
3955066 C
1 C
3955067 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:3956052 original size:45 final size:45
Alignment explanation
Indices: 3956003--3956121 Score: 103
Period size: 45 Copynumber: 2.6 Consensus size: 45
3955993 TTTTTGGTAC
* * ** * **
3956003 GGGCACTTGCCTTGACTGCCATCGACACAAGCTGGGCCCTGGTGT
1 GGGCACTTACCTCGACCACCATCGACACAAGATGACCCCTGGTGT
* *
3956048 GGGCAGTTACCTCGACCACCATCGGCACAAGATGACCCCTGGTGT
1 GGGCACTTACCTCGACCACCATCGACACAAGATGACCCCTGGTGT
**** * *
3956093 GGATGGTTCCCTCGACCACCATCGGCACA
1 GGGCACTTACCTCGACCACCATCGACACA
3956122 TGCTGGGGGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (45 bp):
GGGCACTTACCTCGACCACCATCGACACAAGATGACCCCTGGTGT
Found at i:3957245 original size:45 final size:45
Alignment explanation
Indices: 3957188--3957299 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
3957178 GTACGGCACC
* **
3957188 TGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGT
1 TGCCTCGACCACCATCGGCACAAGATGACCCCTGGTGTGGGCGGT
*
3957233 TGCCTCGGCCACCAAT-GGCACAAGATGACCCCTGGTGTGGGCGGT
1 TGCCTCGACCACC-ATCGGCACAAGATGACCCCTGGTGTGGGCGGT
* * *
3957278 TGCATCGAACACCATCAGCACA
1 TGCCTCGACCACCATCGGCACA
3957300 TGTCGAGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
44 2 0.04
45 53 0.93
46 2 0.04
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (45 bp):
TGCCTCGACCACCATCGGCACAAGATGACCCCTGGTGTGGGCGGT
Found at i:3960024 original size:45 final size:44
Alignment explanation
Indices: 3959975--3960177 Score: 140
Period size: 45 Copynumber: 4.5 Consensus size: 44
3959965 GTAGGTGCAC
*
3959975 TTGCCTCGACCGCCATCGGCACAAGCTAGGCTC-TGGTGTGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGC-AGGC-CGTGGTGTGGGCGA
* * *
3960020 TTGCCTCGATCACCATCGGCACATGCCGGCCGTTGGTGTGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCAGGCCG-TGGTGTGGGCGA
* * * * * * *
3960065 TTGCCTCAACCACCATCGACACAA-AATGGCCCCTGATGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCA-GG-CCGTGGTGTGGGCGA
* * * * * ** * *
3960110 TTGCATCGAACACCATCGGCACATGCTGGGTCGTGGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGC-AGGCCGTGGTGTGGGCGA
* *
3960155 TTGCCTCAACCACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
3960178 GGTCGAGCCC
Statistics
Matches: 122, Mismatches: 30, Indels: 12
0.74 0.18 0.07
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 114 0.93
46 4 0.03
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCAGGCCGTGGTGTGGGCGA
Found at i:3960649 original size:26 final size:26
Alignment explanation
Indices: 3960620--3960670 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3960610 GGTCCGATCG
3960620 TAGACT-GAGAATGAACTCCGTATGCT
1 TAGACTAG-GAATGAACTCCGTATGCT
*
3960646 TAGACTAGGAATGAACTTCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
3960671 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:3962501 original size:26 final size:26
Alignment explanation
Indices: 3962463--3962515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3962453 CCGGTCTGAT
* *
3962463 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3962489 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3962515 C
1 C
3962516 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3962854 original size:26 final size:26
Alignment explanation
Indices: 3962818--3962870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3962808 CTAATCCGAT
3962818 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3962844 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3962870 C
1 C
3962871 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3962999 original size:196 final size:196
Alignment explanation
Indices: 3962660--3963025 Score: 486
Period size: 196 Copynumber: 1.9 Consensus size: 196
3962650 TAGACATGGA
* * *
3962660 ATGAACTCTGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGCAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGCAGAGG
* * * * * *
3962725 TAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTACT
66 AAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTATCGATCCCGCTACTGGTACT
* *
3962790 GCTACCGCAACCCTCGG-TCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
131 GCTACCACAACCCTCGGTTC-AATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
3962854 GG
195 GG
* * ***
3962856 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTTGGCCAG-AGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCC-GCAGAG
* * * * *
3962920 GAAGGATGCGCAAGCCGTGGATCGACCCGGTCCCCTCTGCATGCTATCGATCCCGCTAC-GTTTC
65 GAAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTATCGATCCCGCTACTG-GTA
*
3962984 CTGCTACCACAACCCTCGGTTCAGTCCAATCTTAGACTGGGA
129 CTGCTACCACAACCCTCGGTTCAATCCAATCTTAGACTGGGA
3963026 GCGCACTACG
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
195 1 0.01
196 141 0.97
197 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (196 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGCAGAGG
AAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTATCGATCCCGCTACTGGTACT
GCTACCACAACCCTCGGTTCAATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
G
Found at i:3964487 original size:26 final size:26
Alignment explanation
Indices: 3964447--3964499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3964437 TCGGTCCATT
3964447 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
3964473 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
3964499 C
1 C
3964500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:3964573 original size:162 final size:160
Alignment explanation
Indices: 3964310--3964914 Score: 491
Period size: 162 Copynumber: 3.8 Consensus size: 160
3964300 TTCGGTTGGG
* *
3964310 GCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * ** * *
3964375 CCGATCGAAGAGGTAGGGTG-TGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTACTGTC
66 CCGGCCGGAGAGGCAGAATGCT-CAAGCTGAGGATCGGCCTGATCCCCCTCTGCGTGCTACTATC
*
3964439 GGTCCATTCTTAGACTGGAAATGAACTCCGTAT
130 GATCCA-TCTTAGACTGG-AATGAACTCCGTAT
* * * *
3964472 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
3964537 CCGGCCAGAGAGGCATAATGCTCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCAATC
66 CCGGCCGGAGAGGCAGAATGCTCAAGCTGAGGATCGGCCTGATCCCCCTCTGCGTGC--T-ACTA
* * * *
3964602 TCGCTACCA-C--A-ACCTCG-AT---C-CGGCTAGG
128 TCGAT-CCATCTTAGA-CTGGAATGAACTCCG-TA-T
* * * * * * *
3964630 GCTTAGGAAT-GGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCA
1 GCTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * *
3964694 GTTGGCCGGAGAGGCAGAATGCGCAAG-TCAGGGATCGGCCTGGGTCCCCCTCTGCATGCTGCTA
65 GCCGGCCGGAGAGGCAGAATGCTCAAGCTGA-GGATCGGCCT-GATCCCCCTCTGCGTGCTACTA
* * *
3964758 CCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
128 TCGATC-CATCTTAGACT-GGAATGAACTCCGTAT
* * * ** * *
3964793 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACACACGAAATGAATGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
3964858 CCGGTCGGAGAGGCATAATGCGT-AAGC-CAGGATCAGCCTGATCCCCCTCTGCGTGCT
66 CCGGCCGGAGAGGCAGAATGC-TCAAGCTGAGGATCGGCCTGATCCCCCTCTGCGTGCT
3964915 GTCGATCCCG
Statistics
Matches: 350, Mismatches: 68, Indels: 51
0.75 0.14 0.11
Matches are distributed among these distances:
155 1 0.00
156 7 0.02
157 6 0.02
158 83 0.24
159 21 0.06
160 4 0.01
161 19 0.05
162 119 0.34
163 74 0.21
164 5 0.01
165 8 0.02
166 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (160 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCTCAAGCTGAGGATCGGCCTGATCCCCCTCTGCGTGCTACTATCG
ATCCATCTTAGACTGGAATGAACTCCGTAT
Done.