Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 36 of 120
Found at i:3964797 original size:26 final size:26
Alignment explanation
Indices: 3964768--3964820 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3964758 CCGATCTGAT
3964768 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3964794 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
3964820 C
1 C
3964821 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:3964850 original size:321 final size:320
Alignment explanation
Indices: 3964308--3965040 Score: 868
Period size: 321 Copynumber: 2.3 Consensus size: 320
3964298 AGTTCGGTTG
** * * *
3964308 GGGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATAAACTCCGTATGCCTAAG-CCACCCACGAAACGAGCGTGCGGGCACTC
** * * ** * * * * *
3964373 AACCGATCGAAGAGGTAGGGTGTGCAAG-CCGAGGATCGGCCT-GATCCCCCTCTGCGTGCTACT
65 AGTCGACCGAAGAGGCAGAATGCGCAAGTCAG-GGATCGGCCTGGGTCCCCCTCTGCATGCTGCT
** * * *
3964436 GTCGGTC-CATTCTTAGACTGGAAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
129 ACCGATCTGA-TCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * **
3964500 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGGCCAGAGAGGCATAATGC-TCAAGC
193 CTAAGTCAACACACGAAACGAACGTGCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGT-AAGC
** * * *
3964564 TGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCAATCTCGCTACCACAA-CCTCGATCCGGCTA
257 -CAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCGACTA
* * *
3964628 GGGCTTAGGA-ATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG-AGC
1 GGGCTTA-GACATGGAATAAACTCCGTATGCCTAAGCC-ACCCACGAAACGAGCGTGCGGGCA-C
* * *
3964691 TCAGTTGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTGGGTCCCCCTCTGCATGCTGC
63 TCAGTCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTGGGTCCCCCTCTGCATGCTGC
* * *
3964756 TACCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGC
128 TACCGATCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
3964821 CTAAGTCAACACACGAAATGAATGTGCGGGCACTGAGCCGGTCGGAGAGGCATAATGCGTAAGCC
193 CTAAGTCAACACACGAAACGAACGTGCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGTAAGCC
* * * * *
3964886 AGGATCAGCCTGATCCCCCTCTGCGTGCTGTCGATCCCGTTGCCACAACCCTCGGTCCGACTA
258 AGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCGACTA
* * * *
3964949 GGGCTTAGACATGGAATGAACTCCGTATGCCTAATCCACCCACGAAACGAGTGTGTGGGCACTCA
1 GGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGCACTCA
3965014 GTCGACCGAAGAGGCAGAATGCGCAAG
66 GTCGACCGAAGAGGCAGAATGCGCAAG
3965041 CTGGGGATCG
Statistics
Matches: 344, Mismatches: 59, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
319 1 0.00
320 168 0.49
321 173 0.50
322 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (320 bp):
GGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGCACTCA
GTCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTGGGTCCCCCTCTGCATGCTGCTAC
CGATCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACACACGAAACGAACGTGCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGTAAGCCAGG
ATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCGACTA
Found at i:3965049 original size:158 final size:158
Alignment explanation
Indices: 3964308--3965080 Score: 486
Period size: 158 Copynumber: 4.8 Consensus size: 158
3964298 AGTTCGGTTG
** *
3964308 GGGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* ** * ** * * *
3964373 AACCGATCGAAGAGGTAGGGTGTGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTACTGT
66 AGCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTG---CTGT
* *** * *
3964438 CGGTCCATTC-TTAGACTGGAA-AT-GAACTCCG--TA
128 CGATCC---CGTT-G-CCACAACCTCG--GTCCGACTA
* * * **
3964471 -TGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTT
1 GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
* * * *
3964534 GAGCCGGCC-AGAGAGGCATAATGCTCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTC
65 CAGCCGGCCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTC
* * * * * *
3964598 AATCTCGCTACCACAACCTCGATCCGGCTA
129 GATCCCGTTGCCACAACCTCGGTCCGACTA
* * * * *
3964628 GGGCTTAGGA-ATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG-AGC
1 GGGCTTA-GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-C
** * * * *
3964691 TCAGTTGGCCGGAGAGGCAGAATGCGCAAG-TCAGGGATCGGCCTGGGTCCCCCTCTGCATGCTG
64 TCAGCCGGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCT-GATCCCCCTCTGCGTGCTG
* * * * * *** *
3964755 CTACCGAT-CTGAT-CTTA-GA-CTGGGAATGAACTCT
127 -T--CGATCCCGTTGC-CACAACCTCGGTCCG-ACT-A
* * * * **
3964789 GTATGCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACACACGAAATGAATGTGCGGGCA
1 G--GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA
* * * * * ** *
3964853 CTGAGCCGGTCGGAGAGGCATAATGCGTAAGC-CAGGATCAGCCTGATCCCCCTCTGCGTGCTGT
63 CTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTGT
3964917 CGATCCCGTTGCCACAACCCTCGGTCCGACTA
128 CGATCCCGTTGCCACAA-CCTCGGTCCGACTA
* * *
3964949 GGGCTTAGACATGGAATGAACTCCGTATGCCTAA-TCCACCCACGAAACGAGTGTGTGGGCACTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * **
3965013 AGTCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGTCCAG-TCCCCATCTATGTGCTGTCG
66 AGCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGG-CCTGATCCCCCTCTGCGTGCTGTCG
3965077 ATCC
130 ATCC
3965081 TGCTGCTGGT
Statistics
Matches: 470, Mismatches: 107, Indels: 71
0.73 0.17 0.11
Matches are distributed among these distances:
155 7 0.01
156 2 0.00
157 52 0.11
158 142 0.30
159 39 0.08
160 9 0.02
161 25 0.05
162 121 0.26
163 72 0.15
164 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
AGCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGA
TCCCGTTGCCACAACCTCGGTCCGACTA
Found at i:3965573 original size:26 final size:27
Alignment explanation
Indices: 3965544--3965601 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
3965534 AAGATGACCC
** * *
3965544 ATTTTCTATTTTTCATGA-TTTTTGAA
1 ATTTTCTATGGTTCAAGATTTTTTAAA
*
3965570 ATTTTTTATGGTTCAAGATTTTTTAAA
1 ATTTTCTATGGTTCAAGATTTTTTAAA
3965597 ATTTT
1 ATTTT
3965602 TTTAGAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.05, G:0.09, T:0.60
Consensus pattern (27 bp):
ATTTTCTATGGTTCAAGATTTTTTAAA
Found at i:3966208 original size:45 final size:45
Alignment explanation
Indices: 3966109--3966270 Score: 141
Period size: 45 Copynumber: 3.6 Consensus size: 45
3966099 CCTTTGGTAT
* *
3966109 GGGTAGTTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTCGTAC
1 GGGTAGTTGCCTCGACCACCATCGGCACAAGATGGGCCCTCGTAC
* * * *
3966154 GGGCAGTTGCCTCGACCACCATCGACACAAGAT-GGCCTCTGGTGC
1 GGGTAGTTGCCTCGACCACCATCGGCACAAGATGGGCC-CTCGTAC
* * * * * * * *
3966199 GGGTGGTTGCATCGAACACCATCGGCACATGTTGGGCCGTGGTGC
1 GGGTAGTTGCCTCGACCACCATCGGCACAAGATGGGCCCTCGTAC
* *
3966244 GGGCT-GTT-ACTTGACCACCATCGGCAC
1 GGG-TAGTTGCCTCGACCACCATCGGCAC
3966271 GTGCTAAGCC
Statistics
Matches: 96, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
44 19 0.20
45 72 0.75
46 5 0.05
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
GGGTAGTTGCCTCGACCACCATCGGCACAAGATGGGCCCTCGTAC
Found at i:3966750 original size:26 final size:26
Alignment explanation
Indices: 3966714--3966766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3966704 TCGGTCCGAT
*
3966714 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3966740 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3966766 C
1 C
3966767 GTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3968017 original size:23 final size:23
Alignment explanation
Indices: 3967987--3968040 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
3967977 TCGACCATCA
3967987 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3968010 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGTGCATGGTG
3968033 ATGGCACA
1 ATGGCACA
3968041 GGCTACCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.24, C:0.15, G:0.37, T:0.24
Consensus pattern (23 bp):
ATGGCACATGATGGTGCATGGTG
Found at i:3968818 original size:158 final size:158
Alignment explanation
Indices: 3968415--3968841 Score: 525
Period size: 158 Copynumber: 2.7 Consensus size: 158
3968405 TGGTTGGTCG
* * * *
3968415 AGACCGGGAATGCACTAAGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGTACTCAGCCGA
1 AGACCGAGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTCAGCCGA
* ** * * * *
3968480 TCAGAGA-GTAGAATGCACAAG-CTGAGGATCGGCCCGATCCCTCTCTGCGTGCTGTCGATCTCG
66 TCAGAGAGGTAGGATGCACAAGTC-GAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCA
*
3968543 CTGCAGGTCCCTCGATCCGGTTGGGGCTT
130 CTGCAGGTCCCTCGATCCAGTTGGGGCTT
* * * * * * ** *
3968572 AGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTCAATCGG
1 AGACCGAGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTCAGCCGA
* **
3968637 TCAGAGAGATAGGATGCACAAGTCGAGGATCAACTTGATCCCCCTCTACGTGCTGTCGATCCCAC
66 TCAGAGAGGTAGGATGCACAAGTCGAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCAC
*
3968702 TGCGGGTCCCTCGATCCAGTTGGGGCTT
131 TGCAGGTCCCTCGATCCAGTTGGGGCTT
* *
3968730 AGACCGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGA
1 AGACCGAGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTCAGCCGA
* *** * * *
3968795 TCGGAGAGGTAGGATGTGGAAGTCAAGGATCGACCCTATCCCCCTCT
66 TCAGAGAGGTAGGATGCACAAGTCGAGGATCAACCCGATCCCCCTCT
3968842 GCATGCTACT
Statistics
Matches: 223, Mismatches: 45, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
157 59 0.26
158 163 0.73
159 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
AGACCGAGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTCAGCCGA
TCAGAGAGGTAGGATGCACAAGTCGAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCAC
TGCAGGTCCCTCGATCCAGTTGGGGCTT
Found at i:3968901 original size:26 final size:26
Alignment explanation
Indices: 3968863--3968915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3968853 CCAGTCTGAT
*
3968863 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3968889 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3968915 C
1 C
3968916 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3969270 original size:26 final size:26
Alignment explanation
Indices: 3969219--3969271 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3969209 TCGATCTGAT
***
3969219 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3969245 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3969271 C
1 C
3969272 CTAACTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3970229 original size:45 final size:45
Alignment explanation
Indices: 3970155--3970369 Score: 146
Period size: 45 Copynumber: 4.8 Consensus size: 45
3970145 TGATGATGCA
* * * * * *
3970155 TGGTGGTGGCACATGCATCGCCCATCATCGGCACAGGCT-GCCCTT
1 TGGTGATGGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCC-T
*
3970200 TGGT-ATGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCT
1 TGGTGAT-GGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCT
* ** * * *
3970245 TGGTGCTGGCGGTTGCCTCAACCACCATCGGCACAAGATGGCCCC
1 TGGTGATGGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCT
* ** * * * * ** *
3970290 TAGTGCGGGCAGTTGCATCGAACACCATCGGCACATGCTGGGTCA
1 TGGTGATGGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCT
** ** *
3970335 TGGTGCGGGCGGTTGCCTCGACCACCATTGGCACA
1 TGGTGATGGCACTTGCCTCGACCACCATCGGCACA
3970370 TGTCAAGCCC
Statistics
Matches: 137, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
44 1 0.01
45 132 0.96
46 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TGGTGATGGCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCT
Found at i:3970277 original size:90 final size:90
Alignment explanation
Indices: 3970206--3970369 Score: 238
Period size: 90 Copynumber: 1.8 Consensus size: 90
3970196 CCTTTGGTAT
* * * *
3970206 GGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCTTGGTGCTGGCGGTTGCCTCAACCACC
1 GGGCACTTGCATCGAACACCATCGGCACAAGCTGGGCCATGGTGCGGGCGGTTGCCTCAACCACC
*
3970271 ATCGGCACAAGATGGCCCCTAGTGC
66 ATCGGCACAAGATGGCCCCTAGTAC
* * * *
3970296 GGGCAGTTGCATCGAACACCATCGGCACATGCTGGGTCATGGTGCGGGCGGTTGCCTCGACCACC
1 GGGCACTTGCATCGAACACCATCGGCACAAGCTGGGCCATGGTGCGGGCGGTTGCCTCAACCACC
*
3970361 ATTGGCACA
66 ATCGGCACA
3970370 TGTCAAGCCC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 65 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (90 bp):
GGGCACTTGCATCGAACACCATCGGCACAAGCTGGGCCATGGTGCGGGCGGTTGCCTCAACCACC
ATCGGCACAAGATGGCCCCTAGTAC
Found at i:3970371 original size:45 final size:45
Alignment explanation
Indices: 3970212--3970369 Score: 199
Period size: 45 Copynumber: 3.5 Consensus size: 45
3970202 GTATGGGCAC
* *
3970212 TTGCCTCGACCACCATCGGCACAAGCTGGGCCTTGGTGCTGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * * * *
3970257 TTGCCTCAACCACCATCGGCACAAGATGGCCCCTAGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * *
3970302 TTGCATCGAACACCATCGGCACATGCTGGGTCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
*
3970347 TTGCCTCGACCACCATTGGCACA
1 TTGCCTCGACCACCATCGGCACA
3970370 TGTCAAGCCC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
Found at i:3971169 original size:26 final size:26
Alignment explanation
Indices: 3971140--3971192 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3971130 CTGGTCCGAT
*
3971140 CTTAGATAGGGGATGAACTCCGTATG
1 CTTAGACAGGGGATGAACTCCGTATG
3971166 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGGATGAACTCCGTATG
3971192 C
1 C
3971193 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGGATGAACTCCGTATG
Found at i:3972169 original size:26 final size:26
Alignment explanation
Indices: 3972128--3972180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3972118 CTGGTCTGAT
* *
3972128 CTTAGATTTGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
*
3972154 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
3972180 C
1 C
3972181 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:3973175 original size:45 final size:45
Alignment explanation
Indices: 3973126--3973325 Score: 161
Period size: 45 Copynumber: 4.4 Consensus size: 45
3973116 TGGGCACTTA
* * *
3973126 CCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
* * *** * *
3973171 CCTCGATCACGATCGGCATGTGC-CGGCCCTTGGTGCAGGCGATTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGATTG
* * * *
3973216 CCTCGACCACCATCGGCACAAGAT-GGCCTCTGGTACTGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCC-CTGGTGCGGGCGATTG
* * * *** * *
3973261 CATCGAACACCATCAGCATTTGCTGGGCCGTGGTGCGGGTGATTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
*
3973306 CCTCGACCACCATCGACACA
1 CCTCGACCACCATCGGCACA
3973326 TGCCGAGCCC
Statistics
Matches: 114, Mismatches: 37, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
44 5 0.04
45 104 0.91
46 5 0.04
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTG
Found at i:3973220 original size:90 final size:90
Alignment explanation
Indices: 3973126--3973325 Score: 242
Period size: 90 Copynumber: 2.2 Consensus size: 90
3973116 TGGGCACTTA
* * * * * * *
3973126 CCTCGACCGCCATCGGCACAAGCTGGGCC-CTGGT-GTGGGCGGTTGCCTCGATCACGATCGGCA
1 CCTCGACCACCATCGGCACAAGAT-GGCCTCTGGTACT-GGCGGTTGCATCGAACACCATCAGCA
*
3973189 TGTGCCGGCCCTTGGTGCAGGCGATTG
64 TGTGCCGGCCCGTGGTGCAGGCGATTG
*
3973216 CCTCGACCACCATCGGCACAAGATGGCCTCTGGTACTGGCGGTTGCATCGAACACCATCAGCATT
1 CCTCGACCACCATCGGCACAAGATGGCCTCTGGTACTGGCGGTTGCATCGAACACCATCAGCATG
* * * *
3973281 TGCTGGGCCGTGGTGCGGGTGATTG
66 TGCCGGCCCGTGGTGCAGGCGATTG
*
3973306 CCTCGACCACCATCGACACA
1 CCTCGACCACCATCGGCACA
3973326 TGCCGAGCCC
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
89 4 0.04
90 89 0.95
91 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.20
Consensus pattern (90 bp):
CCTCGACCACCATCGGCACAAGATGGCCTCTGGTACTGGCGGTTGCATCGAACACCATCAGCATG
TGCCGGCCCGTGGTGCAGGCGATTG
Found at i:3973797 original size:26 final size:26
Alignment explanation
Indices: 3973768--3973820 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3973758 TTGGTCCGAT
3973768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3973794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3973820 C
1 C
3973821 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3980695 original size:45 final size:44
Alignment explanation
Indices: 3980646--3980772 Score: 112
Period size: 45 Copynumber: 2.8 Consensus size: 44
3980636 GGCTGCCCTT
3980646 TGGTACGGGCACTTGCCTCGACCACTATCGGCACAAGCTCAGCC-C
1 TGGTACGGGCA-TTGCCTCGACCACTATCGGCACAAG-TCAGCCTC
* * * * * * * *
3980691 TGGTACGAGCGGTTGCCTCGATCACCATCGACACATGTCGGCCTT
1 TGGTACGGGC-ATTGCCTCGACCACTATCGGCACAAGTCAGCCTC
** *
3980736 TGGTGTGGCCGATTGCCTCGACCACTATCGGCACAAG
1 TGGTACGGGC-ATTGCCTCGACCACTATCGGCACAAG
3980773 GTGGCCCCTA
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.08
45 58 0.92
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (44 bp):
TGGTACGGGCATTGCCTCGACCACTATCGGCACAAGTCAGCCTC
Found at i:3980830 original size:90 final size:90
Alignment explanation
Indices: 3980658--3980830 Score: 224
Period size: 90 Copynumber: 1.9 Consensus size: 90
3980648 GTACGGGCAC
* * * *
3980658 TTGCCTCGACCACTATCGGCACAAGCTCAGCCCTGGTACGAGCGGTTGCCTCGATCACCATCGAC
1 TTGCCTCGACCACTATCGGCACAAGCTCAGCCCTAGTACGAGCGGTTGCATCAAACACCATCGAC
*
3980723 ACATGTCGGCCTTTGGTGTGGCCGA
66 ACATGTCGGCCTGTGGTGTGGCCGA
* * * *
3980748 TTGCCTCGACCACTATCGGCACAAGGT-GGCCCCTAGTGCGGGCGGTTGCATCAAACACCATCGA
1 TTGCCTCGACCACTATCGGCACAAGCTCAG-CCCTAGTACGAGCGGTTGCATCAAACACCATCGA
*
3980812 CACATGCTGGGCC-GTGGTG
65 CACATG-TCGGCCTGTGGTG
3980831 CGAGTAGTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
89 1 0.01
90 65 0.92
91 5 0.07
ACGTcount: A:0.18, C:0.32, G:0.28, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACTATCGGCACAAGCTCAGCCCTAGTACGAGCGGTTGCATCAAACACCATCGAC
ACATGTCGGCCTGTGGTGTGGCCGA
Found at i:3981338 original size:26 final size:26
Alignment explanation
Indices: 3981302--3981354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3981292 CCCGTCTGAT
*
3981302 CTTAGACTAGGAATGTACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3981328 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3981354 C
1 C
3981355 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3981637 original size:158 final size:159
Alignment explanation
Indices: 3981328--3981671 Score: 354
Period size: 158 Copynumber: 2.2 Consensus size: 159
3981318 ACTCCATATG
** * * *
3981328 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATGCGGGCACTAAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGACCATACGGGCACTAAAC
* * * * *
3981393 AGGCTGGAGAGGCATAATGCATAAGCCGAGGATCAGTCCAGCCCCCCACTGCATGCTACCGATCC
66 AGGCTGGAAAGGCAGAATGCACAAGCCGAGGATCAGACCAGCCCCCCACTGCATGCTACCAATCC
* ***
3981458 CACTGCCACAACCCTCGGTCTGACTGGGA-
131 CACTGCCACAACCATCGGTCTGA-TCCAAT
* ** *
3981487 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGACCGTACGGGGGC-CAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGACCATACGGGCACTAAA
* * * * * * * *
3981550 CTGGCTGGAAAGGCAGAATGCACAAGCTGGGGATC-GACCCGATCCCCCATTTCGTGCTACCAAT
65 CAGGCTGGAAAGGCAGAATGCACAAGCCGAGGATCAGACCAG-CCCCCCACTGCATGCTACCAAT
* * **
3981614 CCTACTGTCGTAACCATCGGTCTGATCCAAT
129 CCCACTGCCACAACCATCGGTCTGATCCAAT
*
3981645 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
3981672 TTAGCGGGAG
Statistics
Matches: 150, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.04
158 94 0.63
159 50 0.33
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGACCATACGGGCACTAAAC
AGGCTGGAAAGGCAGAATGCACAAGCCGAGGATCAGACCAGCCCCCCACTGCATGCTACCAATCC
CACTGCCACAACCATCGGTCTGATCCAAT
Found at i:3982588 original size:13 final size:13
Alignment explanation
Indices: 3982570--3982594 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3982560 CAATGGCACA
3982570 TGATGGCACATGG
1 TGATGGCACATGG
3982583 TGATGGCACATG
1 TGATGGCACATG
3982595 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3982686 original size:45 final size:45
Alignment explanation
Indices: 3982631--3982754 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 45
3982621 CCTTTGGTAT
* * * * *
3982631 GGGCACTTGCCTCGACCGCCATCGACACAAGCCGGGCCTTAGTGC
1 GGGCAGTTGCCTCGACCACCATCGACACATGCCGGGCCGTAGTAC
** * * * * *
3982676 GGGTGGTTGCCTCGACCCCCATTGGCACATGCTGGGCCGTGGTAC
1 GGGCAGTTGCCTCGACCACCATCGACACATGCCGGGCCGTAGTAC
3982721 GGGCAGTTGCCTCGACCACCATCGACACATGCCG
1 GGGCAGTTGCCTCGACCACCATCGACACATGCCG
3982755 AGCCCCGGTC
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (45 bp):
GGGCAGTTGCCTCGACCACCATCGACACATGCCGGGCCGTAGTAC
Found at i:3983514 original size:26 final size:26
Alignment explanation
Indices: 3983485--3983534 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3983475 TCGGTCTGAT
3983485 CTTAGACCGAGAATGAACTCTGTACG
1 CTTAGACCGAGAATGAACTCTGTACG
* *
3983511 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACCGAGAATGAACTCTGTA
3983535 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCTGTACG
Found at i:3983867 original size:26 final size:26
Alignment explanation
Indices: 3983838--3983890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3983828 CCGATCTAAT
3983838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3983864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3983890 C
1 C
3983891 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3985067 original size:26 final size:25
Alignment explanation
Indices: 3985016--3985067 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
3985006 CCAGTCCGAT
*
3985016 CTTAGACTGGAATGAACTCTGCATG
1 CTTAGACTGGAATGAACTCCGCATG
*
3985041 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGCATG
3985067 C
1 C
3985068 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGCATG
Found at i:3993246 original size:26 final size:26
Alignment explanation
Indices: 3993210--3993262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3993200 CTAGTTTGAT
*
3993210 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3993236 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3993262 C
1 C
3993263 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3994365 original size:45 final size:45
Alignment explanation
Indices: 3994249--3994366 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
3994239 TAGTACGGGT
* * *
3994249 GGTTGCCTCGACCACCATCGATACAAGATGGCCCCTGGTGTGAGC
1 GGTTGCCTCGACCACCATCGATACATGCTGGCCCATGGTGTGAGC
* * * * * *
3994294 GGTTGCATCAAACACCATCGGTACATGCTGGGCCATGGTGTGGGC
1 GGTTGCCTCGACCACCATCGATACATGCTGGCCCATGGTGTGAGC
*
3994339 GGTTGCCTCGACCACCATCGAAACATGC
1 GGTTGCCTCGACCACCATCGATACATGC
3994367 CGAACCCCGG
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (45 bp):
GGTTGCCTCGACCACCATCGATACATGCTGGCCCATGGTGTGAGC
Found at i:3994842 original size:26 final size:26
Alignment explanation
Indices: 3994806--3994884 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
3994796 TCAGTCTGAT
*
3994806 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
3994832 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
3994858 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
3994884 C
1 C
3994885 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATTAACTCCGTATG
Found at i:3995243 original size:29 final size:26
Alignment explanation
Indices: 3995188--3995243 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 26
3995178 CCGGTCCAAT
*
3995188 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATCCTGTATG
3995214 CTTAGACTAGGCGAATGAAGTCCTGTATG
1 CTTAGACT-GG-GAATGAA-TCCTGTATG
3995243 C
1 C
3995244 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.31
27 2 0.08
28 7 0.27
29 9 0.35
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCCTGTATG
Found at i:3996263 original size:45 final size:44
Alignment explanation
Indices: 3996209--3996354 Score: 132
Period size: 45 Copynumber: 3.2 Consensus size: 44
3996199 GGCACTTACT
* * * *
3996209 TCGATCACCATCGGCATAAGCTGGGCCCTAGTGTGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCT-GTGCGGGAGGTTGCC
* * * *
3996254 TCGACCACCATCGGCACAAGATGGCCCCTGATACGGGAGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGGCCCTG-TGCGGGAGGTTGCC
* * * * *
3996299 TAGAACACCATCGGCACATGCTGGGCCATGGTGC-AGACGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCT-GTGCGGGA-GGTTGCC
3996344 TCGACCACCAT
1 TCGACCACCAT
3996355 TAGCACATGT
Statistics
Matches: 79, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
44 3 0.04
45 75 0.95
46 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (44 bp):
TCGACCACCATCGGCACAAGCTGGGCCCTGTGCGGGAGGTTGCC
Found at i:3997321 original size:184 final size:184
Alignment explanation
Indices: 3997012--3997488 Score: 780
Period size: 184 Copynumber: 2.6 Consensus size: 184
3997002 TTAGACATGA
**
3997012 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGAGCTCAGTCGGTCGAGGAGG
1 ATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGAGCTCAGTCGGTCGAGGAGG
3997077 TAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTGCCACAACC
66 TAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTGCCACAACC
3997142 CTTGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGGCTGGGG
131 CTTGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGGCTGGGG
* *
3997196 ATGAACTCGGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGAGCTCGGTCGGTCGAGGAGG
1 ATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGAGCTCAGTCGGTCGAGGAGG
3997261 TAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTGCCACAACC
66 TAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTGCCACAACC
3997326 CTTGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGGCTGGGG
131 CTTGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGGCTGGGG
* * * *
3997380 ATGAACTCTGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCA-CTCAGCCGG-CCAGAGA
1 ATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGG-AGCTCAGTCGGTCGAG-GA
* * * * * * *
3997443 GGCAGGATGCGCATGTCGGGGAT-GACCCGATCCCCTCTGTGTGCTG
64 GGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTG
3997489 TCGATCCTGC
Statistics
Matches: 275, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
183 23 0.08
184 251 0.91
185 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGAGCTCAGTCGGTCGAGGAGG
TAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTGCCACAACC
CTTGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGGCTGGGG
Found at i:3998458 original size:26 final size:26
Alignment explanation
Indices: 3998406--3998458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3998396 CCAGTCTGAT
* *
3998406 CTTAGACTGGGAGTGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
3998432 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
3998458 C
1 C
3998459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:3999493 original size:26 final size:26
Alignment explanation
Indices: 3999457--3999509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3999447 TCGGTCCGAT
*
3999457 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
3999483 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
3999509 C
1 C
3999510 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:3999842 original size:26 final size:26
Alignment explanation
Indices: 3999813--3999865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3999803 CCGGTCTGAT
3999813 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
3999839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3999865 C
1 C
3999866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4000895 original size:45 final size:45
Alignment explanation
Indices: 4000809--4000961 Score: 114
Period size: 45 Copynumber: 3.4 Consensus size: 45
4000799 CGGGCACTTA
* * * *
4000809 CCTCAACCGCCATCGG-AAAAAGCTGGGCCCTGGTGCGGGCGGTTG
1 CCTCAACCACCATCGGCAAAAA-CTGGCCCCTAGTGCAGGCGGTTG
4000854 CCTCAACCACCATCGGCATAAAA-TGGCCCCTAGTGCAGGCGGTTG
1 CCTCAACCACCATCGGCA-AAAACTGGCCCCTAGTGCAGGCGGTTG
* * * ** * * * * *
4000899 CATCGGA-CACCATCGGCACATGCTGGGCCATGGTACGGGCGGTTG
1 CCTC-AACCACCATCGGCAAAAACTGGCCCCTAGTGCAGGCGGTTG
**
4000944 CCTCGGCCACCATCGGCA
1 CCTCAACCACCATCGGCA
4000962 CATGTCAAGC
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
44 2 0.02
45 79 0.91
46 2 0.02
47 4 0.05
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (45 bp):
CCTCAACCACCATCGGCAAAAACTGGCCCCTAGTGCAGGCGGTTG
Found at i:4000962 original size:45 final size:45
Alignment explanation
Indices: 4000830--4000965 Score: 155
Period size: 45 Copynumber: 3.0 Consensus size: 45
4000820 ATCGGAAAAA
** * *
4000830 GCTGGGCCCTGGTGCGGGCGGTTGCCTCAACCACCATCGGCATAA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGGCCACCATCGGCACAT
** * * * * *
4000875 AATGGCCCCTAGTGCAGGCGGTTGCATCGGACACCATCGGCACAT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGGCCACCATCGGCACAT
* *
4000920 GCTGGGCCATGGTACGGGCGGTTGCCTCGGCCACCATCGGCACAT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGGCCACCATCGGCACAT
4000965 G
1 G
4000966 TCAAGCCTCG
Statistics
Matches: 71, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (45 bp):
GCTGGGCCCTGGTGCGGGCGGTTGCCTCGGCCACCATCGGCACAT
Found at i:4001444 original size:26 final size:25
Alignment explanation
Indices: 4001405--4001456 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
4001395 CTGGTCCGAT
4001405 CTTAGACGGGAATGAACTTCGTATG
1 CTTAGACGGGAATGAACTTCGTATG
*
4001430 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGAC-GGGAATGAACTTCGTATG
4001456 C
1 C
4001457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTTCGTATG
Found at i:4001774 original size:158 final size:158
Alignment explanation
Indices: 4001429--4001845 Score: 474
Period size: 158 Copynumber: 2.6 Consensus size: 158
4001419 AACTTCGTAT
* *
4001429 GCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAAC-TTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
4001493 GCAGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGTCCAGTCCCCCTTTGCGTGCTGTCAGT
64 GCAGACCGAAGAGGCAGAATACACAAGCCGGGGATCAGTCCAGTCCCCCTCTGCGTGCTGTCAGT
*
4001558 CCGGCTGCCACAACCCTCGATCTAGCTGGA
129 CCGACTGCCACAACCCTCGATCTAGCTGGA
* * * *
4001588 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACTT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
4001653 CTGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCAG-CCTAGT-CCCCTCTGCGTGCTGT-AGG
65 CAGACCGAAGAGGCAGAATACACAAGCCGGGGATCAGTCC-AGTCCCCCTCTGCGTGCTGTCA-G
*
4001715 TCCTACTGCCACAACCCTC-AGTC-AGACTAGG-
128 TCCGACTGCCACAACCCTCGA-TCTAG-CT-GGA
* *
4001746 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACT-TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
4001811 CCAG-CC-AGAGAGGCGGGATACACAAGCCGTGGATC
65 -CAGACCGA-AGAGGCAGAATACACAAGCCGGGGATC
4001846 GATCGAGTGA
Statistics
Matches: 219, Mismatches: 29, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
157 5 0.02
158 122 0.56
159 91 0.42
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
AGACCGAAGAGGCAGAATACACAAGCCGGGGATCAGTCCAGTCCCCCTCTGCGTGCTGTCAGTCC
GACTGCCACAACCCTCGATCTAGCTGGA
Found at i:4002603 original size:45 final size:45
Alignment explanation
Indices: 4002542--4002699 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 45
4002532 GTACGGGCAC
* * * *
4002542 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * *
4002587 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * ** * * *
4002632 TCGCATCGAACACCATCACCACATGATGGGCCATGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
*
4002677 TTGCGTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
4002700 TTCTGAGCCC
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
Found at i:4003372 original size:26 final size:26
Alignment explanation
Indices: 4003336--4003388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4003326 TCGATCTGAT
4003336 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
4003362 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
4003388 C
1 C
4003389 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4015177 original size:45 final size:43
Alignment explanation
Indices: 4015127--4015269 Score: 142
Period size: 45 Copynumber: 3.2 Consensus size: 43
4015117 TTACCTCAAA
* * * *
4015127 CACCATCAGTACAAGATGGGCATTGGTGCGGGCGGTTGCCTTGAT
1 CACCATC-G-ACAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAC
* * * *
4015172 CACCATCGGCACATGCTGGCCCTTGGTGCAGGCGATTGCCTCGAC
1 CACCATC-G-ACAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAC
* *
4015217 CACCATCGACAGAAGATGGCCCTTGGTGCGGGCGGTTGCATCGAA
1 CACCATCGAC--AAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAC
4015262 CACCATCG
1 CACCATCG
4015270 GCACATGCTG
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 77 0.96
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (43 bp):
CACCATCGACAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAC
Found at i:4015289 original size:45 final size:45
Alignment explanation
Indices: 4015149--4015312 Score: 179
Period size: 45 Copynumber: 3.6 Consensus size: 45
4015139 AAGATGGGCA
* *
4015149 TTGGTGCGGGCGGTTGCCTTGATCACCATCGGCACATGCTGGCCC
1 TTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCC
* * * * * * *
4015194 TTGGTGCAGGCGATTGCCTCGACCACCATCGACAGAAGATGGCCC
1 TTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCC
* *
4015239 TTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGG-AC
1 TTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCC
* *
4015283 TATGGTGTGGGTGGTTGCCTC-AACCACCAT
1 T-TGGTGCGGGCGGTTGCCTCGAA-CACCAT
4015313 TAGCATATAT
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 4 0.04
45 93 0.96
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.23
Consensus pattern (45 bp):
TTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCC
Found at i:4015289 original size:90 final size:90
Alignment explanation
Indices: 4015139--4015312 Score: 233
Period size: 90 Copynumber: 1.9 Consensus size: 90
4015129 CCATCAGTAC
* * * * *
4015139 AAGATGGGCATTGGTGCGGGCGGTTGCCTTGATCACCATCGGCACATGCTGGCCCTTGGTGCAGG
1 AAGATGGCCATTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGCACTTGGTGCAGG
*
4015204 CGATTGCCTCGACCACCATCGACAG
66 CGATTGCCTCAACCACCATCGACAG
* **
4015229 AAGATGGCCCTTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGG-ACTATGGTGTGG
1 AAGATGGCCATTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGCACT-TGGTGCAG
* *
4015293 GTGGTTGCCTCAACCACCAT
65 GCGATTGCCTCAACCACCAT
4015313 TAGCATATAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
89 2 0.03
90 70 0.97
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (90 bp):
AAGATGGCCATTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGCACTTGGTGCAGG
CGATTGCCTCAACCACCATCGACAG
Found at i:4016146 original size:26 final size:26
Alignment explanation
Indices: 4016117--4016169 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4016107 TCGATCCGAT
*
4016117 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4016143 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4016169 C
1 C
4016170 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4017126 original size:45 final size:45
Alignment explanation
Indices: 4017013--4017127 Score: 140
Period size: 45 Copynumber: 2.6 Consensus size: 45
4017003 GTACGGCCAC
* * * * *
4017013 TTGCCTCGACCGCCATCGGTACAAGCTGGGCCCTGGTGAGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCATGGTGAGGGCAG
* * * * *
4017058 TTGCATCAAACACCATCAGCACATGCTGGGCCATGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCATGGTGAGGGCAG
4017103 TTGCCTCGACCACCATCGGCACATG
1 TTGCCTCGACCACCATCGGCACATG
4017128 TCGAGCCCCG
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGGCCATGGTGAGGGCAG
Found at i:4017638 original size:26 final size:26
Alignment explanation
Indices: 4017567--4017645 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
4017557 TTAGTCCGAT
*
4017567 CTTAGACTGGGAATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
4017593 TTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
4017619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4017645 C
1 C
4017646 CTAATTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:4017989 original size:25 final size:25
Alignment explanation
Indices: 4017950--4018000 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
4017940 TCGATCCGAT
*
4017950 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
4017975 CTTAGACTGCG-ATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
4018000 C
1 C
4018001 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:4018288 original size:353 final size:354
Alignment explanation
Indices: 4017594--4018457 Score: 1044
Period size: 353 Copynumber: 2.4 Consensus size: 354
4017584 CTTCATATGT
*
4017594 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCA
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCA
* * *
4017659 CGAAATGAGCGTGCGGGCTCTGAGCAGGCCAGAGAGGCATAATGCGCAA-CCTGGGGATCGGCTC
65 CGAAATGAGCGTGCGGGCGCTGAGC-GGCCAGAGAGGCATAATGCGCAAGCC-GGGGATCAGCCC
* * * * * * *
4017723 GATCCCCCTTTGTGTGCTATCAGTCCCCGTTGCCACAACCCTCAGTTCGGCTAGGGCTTAGAGAT
128 GATCCCCCTCTGCGTGCTGTCGGTCCCCG-TGCCACAACCCTCAGTCCAGCTAGGGCTTAGACAT
* *
4017788 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGGGCTCAGCCGGCTGGAG
192 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGGGCTCAACCAGCTGGAG
* * ** **
4017853 AGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTATCGATCCTGTTGTTGG
257 AGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTACATGCTATCGATCCTACTACTGG
** * * *
4017918 TCCTGTTATCGCAACCCTCGAT-TCGATCCGATC
322 TCCTACTACCACAACCCTCGGTCT-GATCCGATC
*
4017951 TTAGACT-GGAATGAACTCTGTATGCTTAGACTGCGATGAACTCCGTATGCCTAAGTCAACCCAC
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** *
4018015 CAAACGAGCGTGCGGGGGCTCAGTCGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACCCGA
66 GAAATGAGCGTGCGGGCGCTGAG-CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGA
* * *
4018080 T-CCCCTCTACGTGCTGTCGGTCCCAC-TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGG
130 TCCCCCTCTGCGTGCTGTCGGTCCC-CGTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGG
* * * * *
4018143 AATGAACTCCGTATGCCTTAGCCAACCCATGAAACGAGTGTGCGGGGGCTCAACCA-ATCGGAGA
194 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGGGCTCAACCAGCT-GGAGA
** ** * * *
4018207 GGCAGAATGTGCAATTCAGGGATCTGCCCGATCCCCCTCTACGTGCTGTCGATCCTACTACTGGT
258 GGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTACATGCTATCGATCCTACTACTGGT
*
4018272 CCTACTGCCACAACCCTCGGTCTGATCCGATC
323 CCTACTACCACAACCCTCGGTCTGATCCGATC
* * * *
4018304 TTAGATTGGGAATGACCTCCGTATGCTTACACTGGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACT--GGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
4018369 ATGAAATGAGTGTGCGGGCGCTGAGC--CTATCGAAGAGGCATAATGCGTAAGCCGGGG-TCAGC
64 ACGAAATGAGCGTGCGGGCGCTGAGCGGCCA--G-AGAGGCATAATGCGCAAGCCGGGGATCAGC
4018431 CCGATCCCCCTCTGCGTGCTGTCGGTC
126 CCGATCCCCCTCTGCGTGCTGTCGGTC
4018458 TTGCTACCAC
Statistics
Matches: 430, Mismatches: 65, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
352 1 0.00
353 171 0.40
354 41 0.10
355 91 0.21
356 119 0.28
357 7 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (354 bp):
TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAATGAGCGTGCGGGCGCTGAGCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGAT
CCCCCTCTGCGTGCTGTCGGTCCCCGTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAA
TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGGGCTCAACCAGCTGGAGAGGC
AGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTACATGCTATCGATCCTACTACTGGTCCT
ACTACCACAACCCTCGGTCTGATCCGATC
Found at i:4018622 original size:45 final size:45
Alignment explanation
Indices: 4018463--4018622 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
4018453 CGGTCTTGCT
* * * *
4018463 ACCACAATCGGCATATGTTGGGCCCTGGTGCGGGCGGTTGCCTCA
1 ACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTGCCTCA
* * * * *
4018508 ATCACAATCGGCACATGCTGGCCCTTGGTGCGGGTGATTGCCTCA
1 ACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTGCCTCA
* * * * * * * *
4018553 ACCACCATCGACAAAAGATGGCCCCTGGTACGAGCGGTTGCATTGA
1 ACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTGC-CTCA
4018599 A-CACCATCGGCACATGCTGGCCCC
1 ACCACCATCGGCACATGCTGGCCCC
4018623 GTTCATCCCC
Statistics
Matches: 90, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
45 87 0.97
46 3 0.03
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (45 bp):
ACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTGCCTCA
Found at i:4019461 original size:26 final size:26
Alignment explanation
Indices: 4019410--4019462 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4019400 CTGGTCTGAT
**
4019410 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4019436 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
4019462 C
1 C
4019463 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4019597 original size:196 final size:196
Alignment explanation
Indices: 4019239--4019617 Score: 449
Period size: 196 Copynumber: 1.9 Consensus size: 196
4019229 TCCGGTTGGG
* **
4019239 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGGGCTCAG
1 GCTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * *
4019304 CCAGTAGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCAATCT
66 CCAGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCAATCC
* * * * *
4019369 TGCTGCTAGGCCTGCTGTCACAACCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
131 TGCTGCTAGGCCTACTATCACAACCCTCAGTCTAGTCTGATCTTACACTGGGAATGAACTCTGTA
4019434 T
196 T
* * * *
4019435 GCTTAGAC-TGGAGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCA
1 GCTTAGACACGGA-ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * * * * * ** *
4019499 GCCAGCCA-GAGAGGCAGGATGGGTAAGCCGAGGATCGACCCGATCCCCTCTGCGTGTTGTCGAT
65 GCCAG-CAGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCAAT
* * *
4019563 CCTGCTGC-GGGTCCTACTATCGCAACCCTCAGTCTAGTTTGATCTTACACTGGGA
129 CCTGCTGCTAGG-CCTACTATCACAACCCTCAGTCTAGTCTGATCTTACACTGGGA
4019618 GCGCACTACG
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
195 5 0.03
196 145 0.96
197 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (196 bp):
GCTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCAGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCAATCC
TGCTGCTAGGCCTACTATCACAACCCTCAGTCTAGTCTGATCTTACACTGGGAATGAACTCTGTA
T
Found at i:4020812 original size:26 final size:26
Alignment explanation
Indices: 4020783--4020833 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4020773 CGATCCGATC
*
4020783 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCATATGT
*
4020809 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
4020834 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:4021055 original size:159 final size:158
Alignment explanation
Indices: 4020809--4021253 Score: 402
Period size: 158 Copynumber: 2.8 Consensus size: 158
4020799 CTCCGTATGT
** * * * *
4020809 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGTGCTGAGCT
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCC
* * * * *
4020874 GGCAGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCTATGCGTGCTG-CTGGT-C
66 GGCAGAAAAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCCC-ATGCGTGCTGTC-GATCC
* * * *
4020937 TCGCTGCCACAACCCTCGGTCCGA-CTGGGGC
129 T-GCTACCAAAACCCTCAGTCCGATCT-GAGC
* * *
4020968 TTAGACAT-GGAATGAACTCTGTATGCCTAAGACAACTCACGAAACGAGTGTGCGGGGGCTGAGC
1 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGC
* * * * * * *
4021032 CGATC-GAAAAGGTAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CG-GCAGAAAAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCC
* *
4021096 TGCTACCAAAACCCTCAGTCTGATCTGATC
129 TGCTACCAAAACCCTCAGTCCGATCTGAGC
* * * *
4021126 TTAGACTGGGAATCAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAAC
1 TTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGC
* * * * * * * *
4021190 CGGCCAG-AGAGGCAGGATGCACAAGCC-GAGGATCGACCCGATCACCTATACGTGCTGTCGATC
65 CGG-CAGAAAAGGCAGAATACGCAAGCCAG-GGATCGGCCCGATCCCCCATGCGTGCTGTCGATC
4021253 C
128 C
4021254 CGTTGTGAGT
Statistics
Matches: 230, Mismatches: 46, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 130 0.57
159 95 0.41
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCC
GGCAGAAAAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCTG
CTACCAAAACCCTCAGTCCGATCTGAGC
Found at i:4022258 original size:45 final size:43
Alignment explanation
Indices: 4022102--4022256 Score: 123
Period size: 45 Copynumber: 3.5 Consensus size: 43
4022092 TGGGCACTTA
* * *
4022102 CCTCGACCGCCATCGTCACAAGCTGGGCCCTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCT-GGCCGTGGTGT-GGCGGTTG
* * * *
4022147 CCTCGACCACTATCAGG-ACAAGATGGTCGCTGGTGCGGGCGGTTG
1 CCTCGACCACCATC-GGCACAAGCTGGCCG-TGGTG-TGGCGGTTG
* * * * *
4022192 CATTGAACACCAACGGCACATGCTAGGCCGTGGTGTGGCTGGTTG
1 CCTCGACCACCATCGGCACAAGCT-GGCCGTGGTGTGGC-GGTTG
*
4022237 CCTCGACCACTATCGGCACA
1 CCTCGACCACCATCGGCACA
4022257 TGTTGAGCCC
Statistics
Matches: 83, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
44 8 0.10
45 70 0.84
46 5 0.06
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.20
Consensus pattern (43 bp):
CCTCGACCACCATCGGCACAAGCTGGCCGTGGTGTGGCGGTTG
Found at i:4023917 original size:26 final size:26
Alignment explanation
Indices: 4023866--4023918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4023856 CCGCTCTGAT
*
4023866 CTTAGACAGGGAATGAACTCTATATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
4023892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
4023918 C
1 C
4023919 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:4024185 original size:159 final size:159
Alignment explanation
Indices: 4023891--4024186 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 159
4023881 AACTCTATAT
** * *
4023891 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
* * * * * * *
4023956 CTGGCCGGAGAGGCATAATGCATAAGCCGGGGATCGACCCGATCTCCCTCTATGTGCTGCCGGTC
66 CTGACCGAAGAGGCAGAATGCATAAGACAGGGATCGACCCGATCTCCCCCTATGTGCTGCCGATC
4024021 CTGCTGCCACAACCCTCGGTCCAGCTGGG
131 CTGCTGCCACAACCCTCGGTCCAGCTGGG
* * * *
4024050 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAGCCCACGAAACGAGCGTACGGGAT-CTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGG-TGCTC
* ** * * *
4024113 AACTGATCGAAGAGGCAGAATGTGTAAGACAGGGATCGACTCGATC-CCCCCATGTGTGCTGTCG
64 AACTGACCGAAGAGGCAGAATGCATAAGACAGGGATCGACCCGATCTCCCCC-TATGTGCTGCCG
*
4024177 ATCTTGCTGC
128 ATCCTGCTGC
4024187 TGGTCCTACT
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 4 0.04
159 106 0.95
160 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
CTGACCGAAGAGGCAGAATGCATAAGACAGGGATCGACCCGATCTCCCCCTATGTGCTGCCGATC
CTGCTGCCACAACCCTCGGTCCAGCTGGG
Found at i:4024251 original size:26 final size:26
Alignment explanation
Indices: 4024222--4024274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4024212 CCGGTCCGAT
4024222 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
4024248 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4024274 C
1 C
4024275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4025384 original size:45 final size:45
Alignment explanation
Indices: 4025212--4025384 Score: 175
Period size: 45 Copynumber: 3.8 Consensus size: 45
4025202 GTATGGGCAC
* * * *
4025212 TTGCCTCAACCACCATCGGCACAAGCTGGGCCTTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCAGGCGG
* * * * ** *
4025257 TTGCCTCGACCACCATCAACACAGGATGGCCCCTGGTGTGGGCAG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCAGGCGG
* * *
4025302 TTGCATCGAGCACCATCGACACATGCTGGGCCATGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCAGGCGG
** * * *
4025347 TTGCCTCGACCATAATCGGCACATGCCGTGCCCTGGTG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTG
4025385 GGCCCCCGAA
Statistics
Matches: 100, Mismatches: 28, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 100 1.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCAGGCGG
Found at i:4025841 original size:26 final size:26
Alignment explanation
Indices: 4025812--4025864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4025802 TCGGTCTGAT
*
4025812 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
*
4025838 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
4025864 C
1 C
4025865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:4026170 original size:26 final size:26
Alignment explanation
Indices: 4026141--4026193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4026131 CCAGTCCGAT
4026141 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
4026167 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
4026193 C
1 C
4026194 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:4027097 original size:45 final size:46
Alignment explanation
Indices: 4027040--4027147 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 46
4027030 ATCTGGTCCT
* * *
4027040 TGGTGC-GAGCGGTTGCCTTC-ATCACCATTGACACAAGATGGCCCC
1 TGGTGCAG-GCGGTTGCCTTCGAACACCATCGACACAAGATGGCCCA
** * * *
4027085 TGGTGTGGGCGGTTG-CATCGAACACCATCGACACATGATGGGCCA
1 TGGTGCAGGCGGTTGCCTTCGAACACCATCGACACAAGATGGCCCA
4027130 TGGTGCAGGCGGTTGCCT
1 TGGTGCAGGCGGTTGCCT
4027148 CAGCCACTAT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
44 3 0.06
45 45 0.90
46 2 0.04
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (46 bp):
TGGTGCAGGCGGTTGCCTTCGAACACCATCGACACAAGATGGCCCA
Found at i:4027991 original size:26 final size:26
Alignment explanation
Indices: 4027962--4028017 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
4027952 TCGATCCGAT
4027962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4027988 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4028014 CTTA
1 CTTA
4028018 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4029024 original size:45 final size:45
Alignment explanation
Indices: 4028917--4029207 Score: 251
Period size: 45 Copynumber: 6.5 Consensus size: 45
4028907 GGCACATGCA
* * * * * *
4028917 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCAGTTGCC
1 TCGACCACCATCGGCACATGCTAGGCC-GTGGTGCGGGCGGTTGCC
* ** * * * * * *
4028962 TCGATCGTCATCAGCACAAGCTGGGCCCTGGAGCGGGCAGTTGCC
1 TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
* * * * * * * * *
4029007 TCGACCACTATCGGCACAAGATTGCCCCTGGTGTGGGCGGTTACA
1 TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
* * **
4029052 TCAAACACCATCGGCACATGCTAGGCCGTGGTGCGAACGGTTGCC
1 TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
* ** * *
4029097 TCGACCACTATTAGCACATGCTGGGCCGTGGTGAGGGCGGTTGCC
1 TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
* *
4029142 TCAACCACCATCGGCACATGCTAGGCCGTGGTGCGGGTGGTTGCC
1 TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
4029187 TCGACCACCATCGGCACATGC
1 TCGACCACCATCGGCACATGC
4029208 CAAGCCCTGA
Statistics
Matches: 194, Mismatches: 51, Indels: 2
0.79 0.21 0.01
Matches are distributed among these distances:
45 191 0.98
46 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGCTAGGCCGTGGTGCGGGCGGTTGCC
Found at i:4029205 original size:90 final size:90
Alignment explanation
Indices: 4029001--4029207 Score: 279
Period size: 90 Copynumber: 2.3 Consensus size: 90
4028991 GGAGCGGGCA
* * * *
4029001 GTTGCCTCGACCACTATCGGCACAAGATTGCCCCTGGTGTGGGCGGTTACATCAAACACCATCGG
1 GTTGCCTCGACCACTATCGGCACATGCTGGCCCCTGGTGAGGGCGGTTACATCAAACACCATCGG
4029066 CACATGCTAGGCCGTGGTGCGAACG
66 CACATGCTAGGCCGTGGTGCGAACG
** * * * * *
4029091 GTTGCCTCGACCACTATTAGCACATGCTGGGCCGTGGTGAGGGCGGTTGCCTCAACCACCATCGG
1 GTTGCCTCGACCACTATCGGCACATGCTGGCCCCTGGTGAGGGCGGTTACATCAAACACCATCGG
***
4029156 CACATGCTAGGCCGTGGTGCGGGTG
66 CACATGCTAGGCCGTGGTGCGAACG
*
4029181 GTTGCCTCGACCACCATCGGCACATGC
1 GTTGCCTCGACCACTATCGGCACATGC
4029208 CAAGCCCTGA
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 100 1.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
GTTGCCTCGACCACTATCGGCACATGCTGGCCCCTGGTGAGGGCGGTTACATCAAACACCATCGG
CACATGCTAGGCCGTGGTGCGAACG
Found at i:4029929 original size:159 final size:159
Alignment explanation
Indices: 4029673--4029966 Score: 357
Period size: 159 Copynumber: 1.8 Consensus size: 159
4029663 CTCCATATCT
* * *
4029673 TTAGACCAGGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAACA
1 TTAGACCAGGAATGAACTCCATATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACA
* * *
4029738 GGTCGGAGAGGCATAATGCGCAAGCTAGGGATC-GACCCGGT-CCCTCTTTGCGTGCTGTCGATC
66 GGTCGGAGAGGCAGAATGCGCAAGCGAGGGATCAG-CCCGATCCCCTC-TTGCGTGCTGTCGATC
4029801 CCGCTGCCACAACCCTCGGTCCGACTGGGGC
129 CCGCTGCCACAACCCTCGGTCCGACTGGGGC
** **
4029832 TTAGA-CATGGAATGAACTCCATATGGCTAAGCCAACCCATGAAACGAGCGTGCGGG-GACTCAG
1 TTAGACCA-GGAATGAACTCCATATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGCG-CTCA-
* * * *
4029895 TC-GGTCGGAGAGGCAGAATGTGCAAGCCGA-GGATCAGCCCGATCCCCTCTTGTGTGTTGTCGA
63 ACAGGTCGGAGAGGCAGAATGCGCAAG-CGAGGGATCAGCCCGATCCCCTCTTGCGTGCTGTCGA
*
4029958 TCCTGCTGC
127 TCCCGCTGC
4029967 TGGTCCTGCT
Statistics
Matches: 114, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
158 3 0.03
159 102 0.89
160 9 0.08
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
TTAGACCAGGAATGAACTCCATATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACA
GGTCGGAGAGGCAGAATGCGCAAGCGAGGGATCAGCCCGATCCCCTCTTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGACTGGGGC
Found at i:4030043 original size:26 final size:26
Alignment explanation
Indices: 4030002--4030054 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4029992 CCAGTCTAAT
4030002 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4030028 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
4030054 C
1 C
4030055 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4031044 original size:45 final size:45
Alignment explanation
Indices: 4030995--4031148 Score: 175
Period size: 45 Copynumber: 3.4 Consensus size: 45
4030985 GTACGGGCAC
*
4030995 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGAGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGAGG
* * * * **
4031040 TTGCCTCGTCCACCATCGGCACAAGATGGCCCCTGGTATGGGTCG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGAGG
* * * * *
4031085 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTG-CGGATGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGA-GG
*
4031130 TTGCCTTGACCACCATCGG
1 TTGCCTCGACCACCATCGG
4031149 TACATGTCGA
Statistics
Matches: 87, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 2 0.02
45 85 0.98
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGAGG
Found at i:4031815 original size:26 final size:26
Alignment explanation
Indices: 4031786--4031838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4031776 CCAGTCCGAT
*
4031786 CTTAGACTAGGTATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
* *
4031812 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
4031838 C
1 C
4031839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:4033319 original size:26 final size:26
Alignment explanation
Indices: 4033283--4033335 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4033273 CCGGGCTGAT
4033283 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
4033309 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
4033335 C
1 C
4033336 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:4033816 original size:196 final size:196
Alignment explanation
Indices: 4033467--4033845 Score: 440
Period size: 196 Copynumber: 1.9 Consensus size: 196
4033457 TCGGGCTGGG
* ** *
4033467 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGGGCTCAA
* * * * * * *
4033532 CTGGCCGAAGAGGCAGAACGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTGCCGATCC
66 CCGACAGAAGAGGCAGAACGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
*
4033597 AGCTGCTAGTCCTGCTATCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATA
131 AGCTGCTAGTCCTGCGATCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATA
4033662 T
196 T
* * * *
4033663 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGGGCTCA
* * * * * * *
4033727 ACCGACTAG-AGAGGTAGGATGTGCCAGCCAGGGATCGACCCGATCCCCTCTACGTGCTACCGAT
65 ACCGAC-AGAAGAGGCAGAACGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTACCGAT
* * * * ** *
4033791 CCCGTTGC-AGGTTCTGCGGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGA
129 CCAGCTGCTA-GTCCTGCGATCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGA
4033846 GCGCAGTATG
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
195 2 0.01
196 147 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGGGCTCAA
CCGACAGAAGAGGCAGAACGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
AGCTGCTAGTCCTGCGATCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATA
T
Found at i:4035207 original size:26 final size:26
Alignment explanation
Indices: 4035171--4035223 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4035161 CGGGGCTGAT
4035171 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
4035197 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
4035223 C
1 C
4035224 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:4040966 original size:45 final size:45
Alignment explanation
Indices: 4040917--4041033 Score: 103
Period size: 45 Copynumber: 2.6 Consensus size: 45
4040907 TCGTGCGAGT
*
4040917 GGTTGCTTCAACCACCATCAGCACAAGATAGCCCCTAGTGCGGAC
1 GGTTGCATCAACCACCATCAGCACAAGATAGCCCCTAGTGCGGAC
* * * ** * *
4040962 GGTTGCATCGAA-CACCATC-GACACATGCTGGGTCGTGGTGCGGAC
1 GGTTGCATC-AACCACCATCAG-CACAAGATAGCCCCTAGTGCGGAC
* * *
4041007 GATTGCCTCGACCACCATCAGCACAAG
1 GGTTGCATCAACCACCATCAGCACAAG
4041034 TCGAGCCCCA
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
44 2 0.04
45 51 0.91
46 3 0.05
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (45 bp):
GGTTGCATCAACCACCATCAGCACAAGATAGCCCCTAGTGCGGAC
Found at i:4041522 original size:26 final size:26
Alignment explanation
Indices: 4041483--4041535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4041473 CTGGTCCGAT
4041483 CTTAGACTGAGAATGAACTCTATATG
1 CTTAGACTGAGAATGAACTCTATATG
* *
4041509 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTATATG
4041535 C
1 C
4041536 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTATATG
Found at i:4041867 original size:26 final size:26
Alignment explanation
Indices: 4041838--4041890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4041828 TCCGGTCGAT
4041838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4041864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4041890 C
1 C
4041891 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4043332 original size:196 final size:195
Alignment explanation
Indices: 4042976--4043340 Score: 448
Period size: 196 Copynumber: 1.9 Consensus size: 195
4042966 TAGACATGGA
** * * *
4042976 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGTGCTCACCGACCGGAGAGGC
1 ATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCACCGACCAGAAAGGC
* * ** * * *
4043041 GGAATGCGCAAGCCGGGGATCGGCTTGATCCCCTCCTACGTCTGTCGATCCTGCTGCTGGTCCTA
66 GGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCCTACGTCTATCGATCCTACTGCGGGTCCTA
* * * *
4043106 CTATCACAACCCTCGGTCTGGCCTGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGG
131 CCACCACAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGG
* * * *
4043171 ATGAACTCAATATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAAAGG
1 ATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCA-CCGACCAGAAAGG
* * * *
4043236 CAGG-ATGCGTAAGCCAGGGATCGACCCGATCCCCT-CTGCGTGTTATTGATCCTACTGCGGGTC
65 C-GGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCCTACGT-CTATCGATCCTACTGCGGGTC
*
4043299 CTACCGCCACAACCCTCGATCCGGTCC-GATCTTAGACTGGGA
128 CTACCACCACAACCCTCGATCCGG-CCTGATCTTAGACTGGGA
4043341 GCGCACTATG
Statistics
Matches: 141, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
195 50 0.35
196 87 0.62
197 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (195 bp):
ATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCACCGACCAGAAAGGC
GGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCCTACGTCTATCGATCCTACTGCGGGTCCTA
CCACCACAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGG
Found at i:4044167 original size:45 final size:46
Alignment explanation
Indices: 4044105--4044256 Score: 161
Period size: 45 Copynumber: 3.4 Consensus size: 46
4044095 AAGCTACCCT
* *
4044105 TTGGTACGGGC-ACTTGCCTCGACTGCCATCGGCACAAGCTGGGCCC
1 TTGGTACGGGCGA-TTGCCTCGACTACCATCAGCACAAGCTGGGCCC
** * *
4044151 -TGGTGTGGGCGATTGCCTCGA-TCACCATCAGCACATGC-CGGCCC
1 TTGGTACGGGCGATTGCCTCGACT-ACCATCAGCACAAGCTGGGCCC
* * * *
4044195 TTGGTACGGGCGATTACCTCAACCACCATCAGCACAAGAT-GGCCC
1 TTGGTACGGGCGATTGCCTCGACTACCATCAGCACAAGCTGGGCCC
4044240 TTGGTACGGGCGATTGC
1 TTGGTACGGGCGATTGC
4044257 ATTGAACACC
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
44 6 0.07
45 80 0.92
46 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.20
Consensus pattern (46 bp):
TTGGTACGGGCGATTGCCTCGACTACCATCAGCACAAGCTGGGCCC
Found at i:4044267 original size:45 final size:44
Alignment explanation
Indices: 4044130--4044275 Score: 141
Period size: 45 Copynumber: 3.2 Consensus size: 44
4044120 GCCTCGACTG
* ** * *
4044130 CCATCGGCACAAGCTGGGCCC-TGGTGTGGGCGATTGCCTCGATCA
1 CCATCAGCACAAGCT-GGCCCTTGGTACGGGCGATTG-CTTGAACA
* * * * *
4044175 CCATCAGCACATGCCGGCCCTTGGTACGGGCGATTACCTCAACCA
1 CCATCAGCACAAGCTGGCCCTTGGTACGGGCGATTGCTTGAA-CA
*
4044220 CCATCAGCACAAGATGGCCCTTGGTACGGGCGATTGCATTGAACA
1 CCATCAGCACAAGCTGGCCCTTGGTACGGGCGATTGC-TTGAACA
*
4044265 CCATCGGCACA
1 CCATCAGCACA
4044276 TTCTGGGCCG
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
44 7 0.09
45 71 0.88
46 3 0.04
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (44 bp):
CCATCAGCACAAGCTGGCCCTTGGTACGGGCGATTGCTTGAACA
Found at i:4044798 original size:26 final size:26
Alignment explanation
Indices: 4044762--4044812 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4044752 CCGATTCGAT
4044762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4044788 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4044813 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4047226 original size:90 final size:90
Alignment explanation
Indices: 4047123--4047322 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 90
4047113 CGGGCACTTG
* * * ** * * * *
4047123 CCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTTTAGATAGTTGCCTCGATCACCATCGGTACA
1 CCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGACAGTTGCATCGAACACCATCGGCACA
*
4047188 TGCCGACCCTTGGTGCAGGCAATTA
66 TGCCGACCCATGGTGCAGGCAATTA
* * * *
4047213 CCTCGACCACCATCGACACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATTGGCACA
1 CCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGACAGTTGCATCGAACACCATCGGCACA
* ** * * *
4047278 TGCTGGGCCATGGTGCGGGCGATTG
66 TGCCGACCCATGGTGCAGGCAATTA
4047303 CCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
4047323 TGCCGAGCCC
Statistics
Matches: 89, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (90 bp):
CCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGACAGTTGCATCGAACACCATCGGCACA
TGCCGACCCATGGTGCAGGCAATTA
Found at i:4047323 original size:45 final size:45
Alignment explanation
Indices: 4047120--4047325 Score: 180
Period size: 45 Copynumber: 4.6 Consensus size: 45
4047110 GTACGGGCAC
* * * ** **
4047120 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTTTA-GATA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGGCGA
* * * * * *
4047164 GTTGCCTCGATCACCATCGGTACATGCCGACCCTTGGTGCAGGCAA
1 -TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGGCGA
* * * * *
4047210 TTACCTCGACCACCATCGACACAAGATGGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGGCGA
* * * * * *
4047255 TTGCATCGAACACCATTGGCACATGCTGGGCCATGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGGCGA
4047300 TTGCCTCGACCACCATCGGCACATGC
1 TTGCCTCGACCACCATCGGCACATGC
4047326 CGAGCCCCGG
Statistics
Matches: 123, Mismatches: 37, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
45 121 0.98
46 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGGCGA
Found at i:4047794 original size:26 final size:26
Alignment explanation
Indices: 4047765--4047817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4047755 CCGGTCTGAT
4047765 CTTAGACTGAGAATGAACACCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
* *
4047791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
4047817 C
1 C
4047818 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:4048167 original size:26 final size:26
Alignment explanation
Indices: 4048131--4048183 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4048121 CCAATTCGAT
4048131 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4048157 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4048183 C
1 C
4048184 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4055078 original size:45 final size:45
Alignment explanation
Indices: 4054918--4055075 Score: 169
Period size: 45 Copynumber: 3.5 Consensus size: 45
4054908 GTACGGATAC
* *
4054918 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGC-A
1 TTGCCTCGACCACCATCGACACAAGTTGGGCCCTGGTGTGGGCGA
* * * * *
4054962 GTTGCCTCGACCACCATCGACACAAGATCGCCCCTGGTGTAGGCGG
1 -TTGCCTCGACCACCATCGACACAAGTTGGGCCCTGGTGTGGGCGA
* * * *
4055008 TTGCATCGTA-CACCATTGACACATA-TTGGGCCATGGTGCGGGCGA
1 TTGCCTCG-ACCACCATCGACACA-AGTTGGGCCCTGGTGTGGGCGA
4055053 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
4055076 TATAGAGCCT
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
44 1 0.01
45 89 0.97
46 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGTTGGGCCCTGGTGTGGGCGA
Found at i:4056944 original size:90 final size:90
Alignment explanation
Indices: 4056831--4057007 Score: 205
Period size: 90 Copynumber: 2.0 Consensus size: 90
4056821 CACAGGTTGC
* * * * * * *
4056831 CCTTTGGTACGGGCACTTGCCTCGACCGCCATTGGCCTAAGCTGGGCCC-TGGTATGGGTGGTTG
1 CCTTTGGTACGGGCACTTACCTCGACCACCATCGGCATAAGAT-GGCCCTTGGTATAGGCGGTTG
* * *
4056895 CCTCGATCACCATTGGCACATGCCGG
65 CATCGAACACCATCGGCACATGCCGG
* * *
4056921 CCTTTGGTGCGGGCGA-TTACCTCGACCACCATCGGCATAAGATTGCCCTTGGTGTAGGCGGTTG
1 CCTTTGGTACGGGC-ACTTACCTCGACCACCATCGGCATAAGATGGCCCTTGGTATAGGCGGTTG
4056985 CATCGAACACCATCGGCACATGC
65 CATCGAACACCATCGGCACATGC
4057008 TGGGCCGTGG
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 4 0.06
90 67 0.93
91 1 0.01
ACGTcount: A:0.16, C:0.31, G:0.29, T:0.24
Consensus pattern (90 bp):
CCTTTGGTACGGGCACTTACCTCGACCACCATCGGCATAAGATGGCCCTTGGTATAGGCGGTTGC
ATCGAACACCATCGGCACATGCCGG
Found at i:4056973 original size:45 final size:45
Alignment explanation
Indices: 4056807--4057049 Score: 141
Period size: 45 Copynumber: 5.4 Consensus size: 45
4056797 GGCATATACA
* * * * * **
4056807 TCGACCATCATCAGCAC-AGGTTGCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGATGGCCC-TTGGTGCGGGCGGTTGCC
* * * ** *
4056852 TCGACCGCCATTGGC-CTAAGCTGGGCCC-TGGTATGGGTGGTTGCC
1 TCGACCACCATCGGCAC-AAGAT-GGCCCTTGGTGCGGGCGGTTGCC
* * * ** * * *
4056897 TCGATCACCATTGGCACATGCCGGCCTTTGGTGCGGGCGATTACC
1 TCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTGCC
* * ** *
4056942 TCGACCACCATCGGCATAAGATTGCCCTTGGTGTAGGCGGTTGCA
1 TCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTGCC
* * * * * *
4056987 TCGAACACCATCGGCACATGCTGGGCCGTGGTGCGAGCGGTTGCC
1 TCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTGCC
*
4057032 TCAACCACCATCGGCACA
1 TCGACCACCATCGGCACA
4057050 TGTGGAGCCC
Statistics
Matches: 147, Mismatches: 46, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
44 5 0.03
45 134 0.91
46 4 0.03
47 4 0.03
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.22
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTGCC
Found at i:4057844 original size:26 final size:26
Alignment explanation
Indices: 4057815--4057867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4057805 CCGGTCCGAT
4057815 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
4057841 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4057867 C
1 C
4057868 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4058853 original size:45 final size:45
Alignment explanation
Indices: 4058723--4058968 Score: 147
Period size: 45 Copynumber: 5.5 Consensus size: 45
4058713 TTCAGCCAAG
* * * * ** *
4058723 GCCTCGACCATCAAT-GGCACATGATGGCACATGGTGATGGAACTT
1 GCCTCGACCA-CCATCGGCACAAGATGGCCCTTGGTGCGGGCACTT
* * * * * *
4058768 GCATCGACCATCATCGGCACAGGCT-GCCCTTTTGTACGGGCACTT
1 GCCTCGACCACCATCGGCACAAGATGGCCC-TTGGTGCGGGCACTT
* ** * **
4058813 GCCTTGACTGCCATCGGCACAAGTTAGG-CCTTGGTGCGGGCGGTT
1 GCCTCGACCACCATCGGCACAAGAT-GGCCCTTGGTGCGGGCACTT
**
4058858 GCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTT
1 GCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTT
* * ** * * * * * **
4058903 ACATCGAATACCATTGGCACATGCTGGGCCATGGTGCGGGCGGTT
1 GCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTT
*
4058948 GCCTCGACCACCATCGACACA
1 GCCTCGACCACCATCGGCACA
4058969 TGCTGTGCTG
Statistics
Matches: 154, Mismatches: 42, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
44 7 0.05
45 144 0.94
46 2 0.01
47 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (45 bp):
GCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTT
Found at i:4058898 original size:90 final size:90
Alignment explanation
Indices: 4058766--4058968 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
4058756 GTGATGGAAC
* * * * * * * * * *
4058766 TTGCATCGACCATCATCGGCACAGGCTGCCCTTTTGTACGGGCACTTGCCTTGACTGCCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGCCCTTTGGTACGGGCACTTACATCGAATACCATCGGC
* *
4058831 ACAAGTTAGGCCTTGGTGCGGGCGG
66 ACAAGCTAGGCCATGGTGCGGGCGG
* ** *
4058856 TTGCCTCGACCACCATCGGCACAAGATGGCCC-TTGGTGCGGGCGGTTACATCGAATACCATTGG
1 TTGCCTCGACCACCATCGGCACAAGAT-GCCCTTTGGTACGGGCACTTACATCGAATACCATCGG
* *
4058920 CACATGCTGGGCCATGGTGCGGGCGG
65 CACAAGCTAGGCCATGGTGCGGGCGG
*
4058946 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
4058969 TGCTGTGCTG
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
90 89 0.96
91 4 0.04
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGCCCTTTGGTACGGGCACTTACATCGAATACCATCGGC
ACAAGCTAGGCCATGGTGCGGGCGG
Found at i:4058969 original size:45 final size:45
Alignment explanation
Indices: 4058823--4059015 Score: 210
Period size: 45 Copynumber: 4.3 Consensus size: 45
4058813 GCCTTGACTG
* * *
4058823 CCATCGGCACAAGTTAGGCCTTGGTGCGGGCGGTTGCCTCGACCA
1 CCATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGACCA
* * * * * **
4058868 CCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTACATCGAATA
1 CCATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGACCA
* *
4058913 CCATTGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
1 CCATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGACCA
* * *
4058958 CCATCGACACATGCTGTG-CTGTGGTGCGGGTGGTTGCCT-GAACCA
1 CCATCGGCACATGCTGGGCCT-TGGTGCGGGCGGTTGCCTCG-ACCA
*
4059003 CCATTGGCACATG
1 CCATCGGCACATG
4059016 TCGAGCCTCG
Statistics
Matches: 123, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.02
45 121 0.98
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (45 bp):
CCATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGACCA
Found at i:4058983 original size:90 final size:89
Alignment explanation
Indices: 4058839--4059015 Score: 232
Period size: 90 Copynumber: 2.0 Consensus size: 89
4058829 GCACAAGTTA
* *
4058839 GGCCTTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCGGTTA
1 GGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGG-CCTTGGTGCGGGCGGTTA
*
4058904 CATCGAA-TACCATTGGCACATGCTG
65 CAT-GAACCACCATTGGCACATGCTG
* * *
4058929 GGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGACACATGCTGTG-CTGTGGTGCGGGTGGTT
1 GGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATG-GCCT-TGGTGCGGGCGGTT
* *
4058993 GCCTGAACCACCATTGGCACATG
64 ACATGAACCACCATTGGCACATG
4059016 TCGAGCCTCG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
89 5 0.07
90 70 0.92
91 1 0.01
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (89 bp):
GGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCTTGGTGCGGGCGGTTAC
ATGAACCACCATTGGCACATGCTG
Found at i:4059668 original size:26 final size:26
Alignment explanation
Indices: 4059639--4059694 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
4059629 CTGGTCCGAT
4059639 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
* * * * *
4059665 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATA
4059691 CTTA
1 CTTA
4059695 AGCCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:4060032 original size:195 final size:195
Alignment explanation
Indices: 4059488--4060036 Score: 670
Period size: 194 Copynumber: 2.8 Consensus size: 195
4059478 GAAGGCACTA
* * * * * * *
4059488 CGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGTCGACTGGAGAGCCAGAATAC
1 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGC
* * ** * * * *
4059553 GCAAGCCGAGGATCGACCCAATCCCCCCCTGCGTGTTGTCGAACCTGCTGCTGGTCCTGCTGTCG
66 ACAAGCCGGGGATCGACCCGGT-CCCCCTTGCGTGCTGTCGATCCTACTGCTGGTCCTGCT-TCG
* *
4059618 TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATACTTATACTGGGGATGAAC
129 TAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATACGTAGACTGGGGATGAAC
4059683 TC
194 TC
* * * * * ** *
4059685 TGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG-CCGCCAGAGACGCAGAATGC
1 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGC
* * * * * * * *
4059749 ACAAGCCAGGGATCGGCTCGGTCCCTCTCTGTGTGCTGTCGATCCTACTACTGGTCCTGCGTCGC
66 ACAAGCCGGGGATCGACCCGGTCCCCCT-TGCGTGCTGTCGATCCTACTGCTGGTCCTGCTTCGT
* * *
4059814 AACCCTCGGTCCGATCCGATCTTAG-CTAGGAATGAACTCCGTATGCGTAGACTGGGGATGAACT
130 AACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATACGTAGACTGGGGATGAACT
4059878 C
195 C
* *
4059879 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTTGGAGAGGTAGAATGC
1 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGC
* *
4059944 ACAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGCCGATCCTACTGCTGGTCCTGCTTCCGT
66 ACAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTT-CGT
**
4060009 AACCCTCGGTCTGGTTTGATCTTAGACT
130 AACCCTCGGTCTGGTCCGATCTTAGACT
4060037 GCGAGCGCAC
Statistics
Matches: 288, Mismatches: 60, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
194 105 0.36
195 91 0.32
196 56 0.19
197 36 0.12
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (195 bp):
CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGC
ACAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTTCGTA
ACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATACGTAGACTGGGGATGAACTC
Found at i:4060905 original size:45 final size:45
Alignment explanation
Indices: 4060817--4060905 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
4060807 GTTCAGGCAC
** * **
4060817 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTGGTGTGGGTGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTACGGGTGA
4060862 TTGCCTCGACCACCATCGGCACAAGAC-GGCCCCTGGTACGGGTG
1 TTGCCTCGACCACCATCGGCACAAG-CTGGCCCCTGGTACGGGTG
4060906 GTTACCTCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 37 0.97
46 1 0.03
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTACGGGTGA
Found at i:4065565 original size:45 final size:45
Alignment explanation
Indices: 4065498--4065585 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
4065488 GGTGTGACAC
* * *
4065498 GGGCACTTGCCTCGACTGCCATCGGCACAAGTTAGCCCTTGCTGT
1 GGGCACTTGCCTCGACTACCATCGACACAAGCTAGCCCTTGCTGT
* * *
4065543 GGGCAGTTGCCTCGA-TCACCATCGACACATGCTGGCCCTTGCT
1 GGGCACTTGCCTCGACT-ACCATCGACACAAGCTAGCCCTTGCT
4065586 ACGGGTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (45 bp):
GGGCACTTGCCTCGACTACCATCGACACAAGCTAGCCCTTGCTGT
Found at i:4065608 original size:45 final size:45
Alignment explanation
Indices: 4065554--4065664 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 45
4065544 GGCAGTTGCC
* * * *
4065554 TCGATCACCATCGACACATGCTGGCCCTTGCTACGGGTGATTACG
1 TCGAACACCATCGACACATGCTGGCCCCTGCTACGGGCGATTACA
* * * * * * *
4065599 TCGACCACCATCGGCATAAGATGGCCCCTGGTACGGGCGATTGCA
1 TCGAACACCATCGACACATGCTGGCCCCTGCTACGGGCGATTACA
4065644 TCGAACACCATCGACACATGC
1 TCGAACACCATCGACACATGC
4065665 CGGGCAGTGG
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.20
Consensus pattern (45 bp):
TCGAACACCATCGACACATGCTGGCCCCTGCTACGGGCGATTACA
Found at i:4066443 original size:159 final size:159
Alignment explanation
Indices: 4066195--4066614 Score: 578
Period size: 159 Copynumber: 2.6 Consensus size: 159
4066185 GCTTAGGCTG
* * * *
4066195 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGAGCTGAGCCAGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-ACGGGCGCTCAGCCAGCCGGA
** * * *
4066259 GAGGTC-GAATGCTTAAG-TGAAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGC
65 GAGG-CAGAATGCGCAAGCTG-GGGATCGGCCTGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGC
*
4066322 CACAACCCTCGGTCCGACTGGGGCTTAGACAT
128 CACAACCCTCAGTCCGACTGGGGCTTAGACAT
* * *
4066354 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCGGAG
* * *
4066419 AGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCAC
66 AGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCAC
*
4066484 AACCCTCAGTTCGACTGGGGCTTAGACAT
131 AACCCTCAGTCCGACTGGGGCTTAGACAT
* * * *
4066513 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTTAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCGGAG
*
4066578 AGGCAGAATGCGCAAGCTGGGGATTGG-CTCGGTCCCC
66 AGGCAGAATGCGCAAGCTGGGGATCGGCCT-GGTCCCC
4066615 TCCTGCATGC
Statistics
Matches: 229, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
158 3 0.01
159 224 0.98
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.30, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCAC
AACCCTCAGTCCGACTGGGGCTTAGACAT
Found at i:4067721 original size:45 final size:44
Alignment explanation
Indices: 4067632--4067829 Score: 148
Period size: 45 Copynumber: 4.4 Consensus size: 44
4067622 GGCACATGCA
* * * **
4067632 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC--TGGTGCGGGCGGTTGCC
* *
4067677 TCGACCGCCATCGGCACAAGCTGGACCCTGGTGCAGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGG-CCCTGGTGCGGGCGGTTGCC
* * * * * * *
4067722 TTGATCACCATCGGTACATGCCGGCCCTTGGTGCGGGCGATTGCA
1 TCGACCACCATCGGCACAAGCTGGCCC-TGGTGCGGGCGGTTGCC
* * * * *
4067767 TCGAACACCACCGACA-AATGCTAGGCCATGGTGCGGGCGGATGCC
1 TCGACCACCATCGGCACAA-GCT-GGCCCTGGTGCGGGCGGTTGCC
*
4067812 TCGACCACCATCCGCACA
1 TCGACCACCATCGGCACA
4067830 TGCCGAGCCC
Statistics
Matches: 116, Mismatches: 31, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
44 4 0.03
45 103 0.89
46 6 0.05
47 3 0.03
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (44 bp):
TCGACCACCATCGGCACAAGCTGGCCCTGGTGCGGGCGGTTGCC
Found at i:4074568 original size:26 final size:26
Alignment explanation
Indices: 4074528--4074579 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4074518 CAGTCTGATT
*
4074528 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
4074554 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
4074580 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:4075457 original size:26 final size:26
Alignment explanation
Indices: 4075406--4075458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4075396 CCGGTCTGAT
***
4075406 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTAAATATG
4075432 CTTAGACTAGGAATGAACTAAATATG
1 CTTAGACTAGGAATGAACTAAATATG
4075458 C
1 C
4075459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTAAATATG
Found at i:4076279 original size:90 final size:90
Alignment explanation
Indices: 4076162--4076374 Score: 257
Period size: 90 Copynumber: 2.4 Consensus size: 90
4076152 CTAGGCCCTA
* * * * * ** *
4076162 GTGCGGGTGATTGCCTTGACCATCATCGGTACAAGCTAGG-CCCTGGTGTGGGCGGTTGCCTCGA
1 GTGCGAGTGATTGCCTCGACCACCATCGGCACAAGAT-GGCCCCTGGTACGGGCGGTTGCATCGA
* * *
4076226 TCACCATCGGCACATGCCAACCCTTG
65 ACACCATCAGCACATGCCAACCCGTG
4076252 GTGCGAGTGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAA
1 GTGCGAGTGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAA
* **
4076317 CACCATCAGCACATGCTAGGCCGTG
66 CACCATCAGCACATGCCAACCCGTG
* * *
4076342 GTGCGAGCGGTTGCCTCGACCACCGTCGGCACA
1 GTGCGAGTGATTGCCTCGACCACCATCGGCACA
4076375 TGTCGAACTA
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
89 2 0.02
90 103 0.98
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (90 bp):
GTGCGAGTGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAA
CACCATCAGCACATGCCAACCCGTG
Found at i:4076375 original size:45 final size:45
Alignment explanation
Indices: 4076152--4076376 Score: 202
Period size: 45 Copynumber: 5.0 Consensus size: 45
4076142 GACCCGTTTT
* * * * * * * *
4076152 CTAGGCCCTAGTGCGGGTGATTGCCTTGACCATCATCGGTACAAG
1 CTAGGCCCTGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
* * *
4076197 CTAGGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGGCACATG
1 CTAGGCCCTGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
* * * * *
4076242 CCA-ACCCTTGGTGCGAGTGATTGCCTCGACCACCATCGGCACAAG
1 CTAGGCCC-TGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
* * * * * *
4076287 AT-GGCCCCTGGTACGGGCGGTTGCATCGAACACCATCAGCACATG
1 CTAGG-CCCTGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
* *
4076332 CTAGGCCGTGGTGCGAGCGGTTGCCTCGACCACCGTCGGCACATG
1 CTAGGCCCTGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
4076377 TCGAACTAAC
Statistics
Matches: 140, Mismatches: 36, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
44 3 0.02
45 132 0.94
46 5 0.04
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
CTAGGCCCTGGTGCGAGCGGTTGCCTCGACCACCATCGGCACATG
Found at i:4076830 original size:26 final size:26
Alignment explanation
Indices: 4076791--4076843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4076781 TCAGTCCAAT
*
4076791 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
*
4076817 CTTAAACTGTGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
4076843 C
1 C
4076844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:4077142 original size:26 final size:26
Alignment explanation
Indices: 4077113--4077168 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
4077103 CCGATCCGAT
*
4077113 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* **
4077139 CTTAGACTGGGGTTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
4077165 CTTA
1 CTTA
4077169 AGTGGGTTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4077900 original size:45 final size:45
Alignment explanation
Indices: 4077846--4077938 Score: 105
Period size: 45 Copynumber: 2.1 Consensus size: 45
4077836 GGCTGCCCTT
* * * *
4077846 TGGTACAGGCACTTGCCTCGACCGCCATCGGCACAAGCTGGGCCC
1 TGGTACAGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
* ** **
4077891 TGGTGCAGGCGGTTATGTCGACCACCATCGGCACAAGATGGCCCC
1 TGGTACAGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
4077936 TGG
1 TGG
4077939 CATGGGCAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.17
Consensus pattern (45 bp):
TGGTACAGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
Found at i:4078510 original size:27 final size:26
Alignment explanation
Indices: 4078457--4078510 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
4078447 TCGGTCTGAT
*
4078457 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
4078483 CTTAGACTAGGGAATGAACTCTGCATG
1 CTTAGACT-GGGAATGAACTCCGCATG
4078510 C
1 C
4078511 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:4078842 original size:26 final size:26
Alignment explanation
Indices: 4078813--4078865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4078803 CCGGTCCAAT
*
4078813 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCATATG
4078839 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGGATGAACTCCATATG
4078865 C
1 C
4078866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCATATG
Found at i:4079864 original size:45 final size:45
Alignment explanation
Indices: 4079810--4079924 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 45
4079800 CACTTACCTC
* * * *
4079810 GACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGATTGCCTT
1 GACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGATTGCATT
* * *
4079855 GACCACCATCAGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATT
1 GACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGATTGCATT
* * * *
4079900 GAACAGCATCGGCACATGTTGGGCC
1 GACCACCATCGGCACAAGATGGGCC
4079925 ACAGTGCAAA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
GACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGATTGCATT
Found at i:4080771 original size:26 final size:26
Alignment explanation
Indices: 4080742--4080794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4080732 CCGGTCTTAT
*
4080742 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
4080768 CTTAGACTAGGGATGAATTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
4080794 C
1 C
4080795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:4082259 original size:26 final size:27
Alignment explanation
Indices: 4082223--4082280 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
4082213 CTAGTCCGAT
**
4082223 CTTAGACTAGGAATGGACTTCGTATG-
1 CTTAGACTAGGAATCAACTTCGTATGC
4082249 CTTAGACTAGGAATCAACTTCGTATGC
1 CTTAGACTAGGAATCAACTTCGTATGC
4082276 CTTAG
1 CTTAG
4082281 TCAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (27 bp):
CTTAGACTAGGAATCAACTTCGTATGC
Found at i:4083631 original size:45 final size:45
Alignment explanation
Indices: 4083582--4083769 Score: 155
Period size: 45 Copynumber: 4.2 Consensus size: 45
4083572 GCCTCGATTG
* *
4083582 CCATCGGCACAAGCTGGCCCCTGGTGCGGGCAGTTGCCTCGATCA
1 CCATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACCA
* * * ** * * * *
4083627 CCATCAGCACATGC-CGCCCCTTGGTATGGGTGATTGTCTCAACCA
1 CCATCGGCACAAGCTGGCCCC-TGGTGCGGGCGGTTGCCTCGACCA
* * * * * *
4083672 CCATCGACACAAGATGG-CCTTGGTGCGGGTGGTTGCTTCGAGCA
1 CCATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACCA
* ** * *
4083716 CCATCGGCACATGCTGGGTCATGGTGCGGGCGGTTGCGTCGACCA
1 CCATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACCA
4083761 CCATCGGCA
1 CCATCGGCA
4083770 AATGTCGAGC
Statistics
Matches: 108, Mismatches: 32, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
44 36 0.33
45 71 0.66
46 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACCA
Found at i:4084191 original size:26 final size:26
Alignment explanation
Indices: 4084162--4084214 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4084152 CCGGTCCGAT
* *
4084162 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4084188 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4084214 C
1 C
4084215 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4084549 original size:26 final size:26
Alignment explanation
Indices: 4084513--4084565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4084503 TCGGTCCGAT
4084513 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4084539 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4084565 C
1 C
4084566 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4084651 original size:162 final size:162
Alignment explanation
Indices: 4084342--4084660 Score: 385
Period size: 162 Copynumber: 2.0 Consensus size: 162
4084332 ACCATCGGTC
* * *
4084342 CGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTAGGGATGAACTCTGTATACCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATACCTA
* * * * *
4084407 AGTCAACCCACGATATGAGCGTGCAGGCGCTCAACTGGCCAGAGAGGCAGGATGTGTAAGCCGAG
66 AGTCAACCCACGATACGAGCATGCAGGCGCTCAACTGGCCAGAGAGGCAGAATGCGCAAGCCGAG
* **
4084472 GATCGGCTTGATCCCCCTCTGCATGCTACTAT
131 GATCGCCCCGATCCCCCTCTGCATGCTACTAT
*
4084504 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGGAATGAACTCCGTATGCCT
1 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGG-ATGAACTCCGTATACCT
* * * * * * *
4084568 AAGTCAACCCACGGA-ACGAGCATGCGGGTGCT-GAGTAGGCCGGAGAGGCATAATGCGCAAGCT
65 AAGTCAACCCAC-GATACGAGCATGCAGGCGCTCAACT-GGCCAGAGAGGCAGAATGCGCAAGCC
* *
4084631 GGGGATCAGCCCCG-TCCCCCTCTGCGTGCT
128 GAGGATC-GCCCCGATCCCCCTCTGCATGCT
4084661 GCCAGTCCCA
Statistics
Matches: 132, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
161 5 0.04
162 122 0.92
163 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (162 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATACCTA
AGTCAACCCACGATACGAGCATGCAGGCGCTCAACTGGCCAGAGAGGCAGAATGCGCAAGCCGAG
GATCGCCCCGATCCCCCTCTGCATGCTACTAT
Found at i:4084884 original size:517 final size:510
Alignment explanation
Indices: 4084187--4085241 Score: 1443
Period size: 517 Copynumber: 2.1 Consensus size: 510
4084177 AACTCCGTAT
4084187 GCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCAAGCGTACGGGGGCTCAGCCAGCC
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCAAGCGTACGGGGGCTCAGCCAGCC
* * * **
4084251 GGAGAGGTAGAATGCATAAGCCAGGGATTGGCCCGATCCCACCTGCGTGCTACCGATTTTACTAC
65 GAAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCCTACTAC
*
4084316 AGATCCTACTGCTGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTA
130 AGATCCTACTGCTGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTA
** * * * **
4084381 GACTAGGGATGAACTCTGTATACCTAAGTCAACCCACGATATGAGCGTGCAGGCGCTCAACTGGC
195 GACTAGGGATGAACTCCATATACCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCAGC
* * * * *
4084446 CAGAGAGGCAGGATGTGTAAGCCGAGGATCGGCTTGATCCCCCTCTGCATGCTACTATCGGTCCG
260 CAAAGAGGCAGGATGTGCAAGCCGAGGATCAGCTCGATCCCCCTCTACATGCTACTATCGGTCCG
*
4084511 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
325 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** ** * *
4084576 CCACGGAACGAGCATGCGGGTGCTGAG-TAGGCCGGAGAGGCATAATGCGCAAGCTGGGGATC-A
390 CCACAAAACGAGCATGCGGGCACTGAGCT-GGCCGGAGAGGCATAATGCGCAAGCAGGCGATCGA
* *
4084639 GCCCCGTCCCCCTCTGCGTGCTGCCAGTCCCACTACCACAACCCTCTG-TCTGACTGGG
454 -CCCCGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTC-GATCCGACTGGG
* *
4084697 GCTTAGACATGGAATGAACTTAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA-CC-C---A--AGCGTACGGGGGCTCAG
* * * * * * * * *
4084762 TCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCTGATCC
59 CCAGCCGAAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCC
* * * *
4084827 TGCTACAGGTCCTACTGCTGCAGCCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCTTA
124 TACTACAGATCCTACTGCTGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCTTA
* * *
4084892 TGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGCGCTCA
189 TGCTTAGACTAGGGATGAACTCCATATACCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCA
* * * * **
4084957 GCCAGCCAAAGAGGTAGGATGTGCAAGCCGAGGATCAGCTCGGTCCCCCTCTACGTGCTGTTATC
254 ACCAGCCAAAGAGGCAGGATGTGCAAGCCGAGGATCAGCTCGATCCCCCTCTACATGCTACTATC
* *
4085022 GGTCGGATCTTAGACTAGGAATGAATTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
319 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
4085087 GTCAACCCATAAAACGAGCATGCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCAGGCG
384 GTCAACCCACAAAACGAGCATGCGGGCACTGAGCTGGCCGGAGAGGCATAATGCGCAAGCAGGCG
* * * *
4085152 ATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGG
449 ATCGACCCCGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTCGATCCGACTGGG
*
4085214 ACTTAGACATGGAATGAACTTCGTATGC
1 GCTTAGACATGGAATGAACTTCGTATGC
4085242 TTAGCCGGTC
Statistics
Matches: 473, Mismatches: 61, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
510 34 0.07
511 3 0.01
512 1 0.00
515 1 0.00
516 1 0.00
517 431 0.91
518 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (510 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGCGTACGGGGGCTCAGCCAGCCG
AAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCCTACTACA
GATCCTACTGCTGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAG
ACTAGGGATGAACTCCATATACCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCAGCC
AAAGAGGCAGGATGTGCAAGCCGAGGATCAGCTCGATCCCCCTCTACATGCTACTATCGGTCCGA
TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCATGCGGGCACTGAGCTGGCCGGAGAGGCATAATGCGCAAGCAGGCGATCGACC
CCGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTCGATCCGACTGGG
Found at i:4084904 original size:26 final size:26
Alignment explanation
Indices: 4084868--4084920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4084858 CCGGTCTGAT
*
4084868 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4084894 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4084920 C
1 C
4084921 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4085068 original size:26 final size:26
Alignment explanation
Indices: 4085030--4085082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4085020 TCGGTCGGAT
*
4085030 CTTAGACTAGGAATGAATTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4085056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4085082 C
1 C
4085083 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4085165 original size:162 final size:162
Alignment explanation
Indices: 4084859--4085177 Score: 390
Period size: 162 Copynumber: 2.0 Consensus size: 162
4084849 GCCCTCGATC
* * * *
4084859 CGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGGATGAACTCCATATGCCTA
1 CGGTCGGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * * * *
4084924 AGTCAACCCACAAAACGAGCGTGTAGGCGCTCAGCCAGCCAAAGAGGTAGGATGTGCAAGCCGAG
66 AGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCAGCCAAAGAGGCAGAATGCGCAAGCAGAG
*
4084989 GATCAGCTCGGTCCCCCTCTACGTGCTGTTAT
131 GATCAGCCCGGTCCCCCTCTACGTGCTGTTAT
* *
4085021 CGGTCGGATCTTAGACTAGGAATGAATTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
1 CGGTCGGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTA
* * * ** * ** *
4085086 AGTCAACCCATAAAACGAGCATGCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCAG-G
66 AGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCAGCCAAAGAGGCAGAATGCGCAAGCAGAG
*
4085150 CGATC-GACCCGGTCCCCCTCTGCGTGCT
131 -GATCAG-CCCGGTCCCCCTCTACGTGCT
4085178 ACCGGTCCCG
Statistics
Matches: 131, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
161 2 0.02
162 129 0.98
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (162 bp):
CGGTCGGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTA
AGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCAGCCAAAGAGGCAGAATGCGCAAGCAGAG
GATCAGCCCGGTCCCCCTCTACGTGCTGTTAT
Found at i:4085380 original size:26 final size:26
Alignment explanation
Indices: 4085351--4085401 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4085341 CCGGTCCGAT
*
4085351 CTTAGACTGGGAATTAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
4085377 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4085402 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Done.