Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 37 of 120
Found at i:4086403 original size:45 final size:45
Alignment explanation
Indices: 4086362--4086491 Score: 122
Period size: 45 Copynumber: 2.9 Consensus size: 45
4086352 AAACAAGCTG
*
4086362 GGACC-TAGTGCGGGTGATTGCCACGATCACCATCGGCACAAGTC
1 GGACCTTAGTGCGGGTGATTGCCACGACCACCATCGGCACAAGTC
* * * * *
4086406 GGCCCTTGGTGCGGGTGATTGCCTCGACCACCATTGGCACAAGAC
1 GGACCTTAGTGCGGGTGATTGCCACGACCACCATCGGCACAAGTC
* * * * *
4086451 GGCCCCTGGTGCGGG-CAGTTG-CATCGAACACCATCGGCACA
1 GGACCTTAGTGCGGGTGA-TTGCCA-CGACCACCATCGGCACA
4086492 TGCTGGGCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 6 0.08
45 66 0.92
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
GGACCTTAGTGCGGGTGATTGCCACGACCACCATCGGCACAAGTC
Found at i:4092898 original size:45 final size:43
Alignment explanation
Indices: 4092798--4092904 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 43
4092788 GGGTCTTGGT
* *
4092798 GTGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTA
1 GTGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGACCCTA
* * * * *
4092841 GTGCGGCTGGTTGCATCGAACACCATCGGCACATGCTGGACCGTGGG
1 GTG-GGC-GGTTGCCTCGAACACCATCGGCACAAGATGGACCCT--A
4092888 GTGGGCGGTTGCCTCGA
1 GTGGGCGGTTGCCTCGA
4092905 CTACCATTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 40 0.77
46 3 0.06
47 3 0.06
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.19
Consensus pattern (43 bp):
GTGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGACCCTA
Found at i:4093411 original size:26 final size:26
Alignment explanation
Indices: 4093359--4093411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4093349 TCAGTCTGAT
* *
4093359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
*
4093385 CTTAGACTAGGAATGAACTCTGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
4093411 C
1 C
4093412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:4093950 original size:196 final size:196
Alignment explanation
Indices: 4093543--4094013 Score: 518
Period size: 196 Copynumber: 2.4 Consensus size: 196
4093533 TTCGACTGGG
* ** * *
4093543 GCTTAGAC-ATGGAATGAACTCTATATGCCTAAGCCAA-CCAATGAAACGAGCATGCAAGTGCTC
1 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCAA-GAAACGAGCGTGCAAGTGCTC
* * * * * * * ** **
4093606 AGCCGGCCGGAGAGGCAGAATGCGTAAG-TCAGGGATCGGCCCAGGGCC-CTCCTGTGTGCTATC
64 AGTCGACCAGAGAGGCAGCATGCGTAAGCT-GGGGATTGACCC-GATCCACT-CTACGTGCTATC
* * * * * *
4093669 GATCCTACTGCTGGTCCTGCTACCGCAACCCCCTGTCCGGTCTGATCTTAGACTGGGAATTAACT
126 GATCCCACTGCAGGTCCTGCTACCGCAACCCCCAGTCCGATCCGATCTTAGACTGGGAATGAACT
*
4093734 CCGTAT
191 CCATAT
* * * **
4093740 GCTTAGATTAGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAAGTGCTCAG
4093805 TCGACCAGAGAGGCAGCATGCGTAAGCTGGGGATTGACCCGATCCACTCTACGTGCTATCGATCC
66 TCGACCAGAGAGGCAGCATGCGTAAGCTGGGGATTGACCCGATCCACTCTACGTGCTATCGATCC
* *** * *
4093870 CGCTGCAGGTCCTGCTGTTGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCATA
131 CACTGCAGGTCCTGCTACCGCAACCCCCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATA
4093935 T
196 T
* * * *
4093936 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAATGAGCGTGCAAGTGCTCAT
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAAGTGCTCAG
*
4094001 TCGGCCAGAGAGG
66 TCGACCAGAGAGG
4094014 TAAGATGTCC
Statistics
Matches: 226, Mismatches: 44, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
196 139 0.62
197 81 0.36
198 6 0.03
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAAGTGCTCAG
TCGACCAGAGAGGCAGCATGCGTAAGCTGGGGATTGACCCGATCCACTCTACGTGCTATCGATCC
CACTGCAGGTCCTGCTACCGCAACCCCCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATA
T
Found at i:4093952 original size:26 final size:26
Alignment explanation
Indices: 4093911--4093963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4093901 CTGATCCGAT
4093911 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4093937 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
4093963 C
1 C
4093964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4094493 original size:23 final size:23
Alignment explanation
Indices: 4094463--4094517 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
4094453 CCACCATCAC
4094463 TGGCACATGATGGCGCATGGTAA
1 TGGCACATGATGGCGCATGGTAA
* *
4094486 TGGCACATGATGGTGCATGGTGA
1 TGGCACATGATGGCGCATGGTAA
4094509 TGGCACATG
1 TGGCACATG
4094518 CATCGACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (23 bp):
TGGCACATGATGGCGCATGGTAA
Found at i:4094602 original size:45 final size:45
Alignment explanation
Indices: 4094548--4094647 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
4094538 GGCTACCCTT
* * * * *
4094548 TGGTACGGGCACTTACCTCGATCGCCATCGGCACAAGCTGGGCCC
1 TGGTGCGGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
** * *
4094593 TGGTGCGGGCGGTTGCCTCGACCACCTTCGGCACAAGATGGCCCC
1 TGGTGCGGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
*
4094638 TGGTGTGGGC
1 TGGTGCGGGC
4094648 GATTACATCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.19
Consensus pattern (45 bp):
TGGTGCGGGCACTTACCTCGACCACCATCGGCACAAGATGGCCCC
Found at i:4094720 original size:45 final size:45
Alignment explanation
Indices: 4094563--4094717 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 45
4094553 CGGGCACTTA
* * * *
4094563 CCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGTGGGCGGTTG
* * * * *
4094608 CCTCGACCACCTTCGGCACAAGATGGCCCCTGGTGTGGGCGATTA
1 CCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGTGGGCGGTTG
* * * * * * **
4094653 CATCAAACACCATCAGCACATGTTGGGCCGTGGTGTAAGCGGTTG
1 CCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGTGGGCGGTTG
4094698 CCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
4094718 TGTCAAGCTC
Statistics
Matches: 85, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 85 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGTGGGCGGTTG
Found at i:4095553 original size:25 final size:26
Alignment explanation
Indices: 4095501--4095555 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
4095491 CTGATCCGAT
*
4095501 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4095527 CTTAGACT-GGTATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTATG
4095552 CTTA
1 CTTA
4095556 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4096413 original size:13 final size:13
Alignment explanation
Indices: 4096395--4096419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4096385 CAATGGCACA
4096395 TGATGGCGCATGG
1 TGATGGCGCATGG
4096408 TGATGGCGCATG
1 TGATGGCGCATG
4096420 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (13 bp):
TGATGGCGCATGG
Found at i:4097519 original size:26 final size:26
Alignment explanation
Indices: 4097483--4097535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4097473 CTGGTTCGAT
4097483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4097509 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4097535 C
1 C
4097536 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4097806 original size:20 final size:20
Alignment explanation
Indices: 4097781--4097818 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
4097771 CCAGGCCTGT
4097781 TGGCAGGTATCTATGCGCGC
1 TGGCAGGTATCTATGCGCGC
4097801 TGGCAGGTATCTATGCGC
1 TGGCAGGTATCTATGCGC
4097819 AAAGCCTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.24, G:0.34, T:0.26
Consensus pattern (20 bp):
TGGCAGGTATCTATGCGCGC
Found at i:4098266 original size:10 final size:10
Alignment explanation
Indices: 4098251--4098276 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
4098241 CGCTTGTGTT
4098251 TTAGGCTGAC
1 TTAGGCTGAC
4098261 TTAGGCTGAC
1 TTAGGCTGAC
4098271 TTAGGC
1 TTAGGC
4098277 ATAAAGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (10 bp):
TTAGGCTGAC
Found at i:4104587 original size:45 final size:45
Alignment explanation
Indices: 4104504--4104621 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
4104494 GTCCCTGGCA
* * * * * * *
4104504 CGGGCGGTTGCCTCGATCACCATTGACACATATCGGCCCTTGGTG
1 CGGGCGATTGCCTCGAACACCATTGGCAAAGATCGGCCCCTAGTG
*
4104549 CGGGCGATTGCCTCGACCACCATTGGCATAAGAT-GGCCCCTAGTG
1 CGGGCGATTGCCTCGAACACCATTGGCA-AAGATCGGCCCCTAGTG
* * *
4104594 CGGGCGACTGCATCGAACACGATTGGCA
1 CGGGCGATTGCCTCGAACACCATTGGCA
4104622 CATGCTGGGC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 58 0.95
46 3 0.05
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
CGGGCGATTGCCTCGAACACCATTGGCAAAGATCGGCCCCTAGTG
Found at i:4105162 original size:26 final size:26
Alignment explanation
Indices: 4105111--4105163 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4105101 TCGGTTCGAT
* * *
4105111 CTTAGATTGGGAATGTACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4105137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4105163 C
1 C
4105164 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4105491 original size:26 final size:26
Alignment explanation
Indices: 4105455--4105507 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4105445 CCAGTCTAAT
*
4105455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
4105481 CTTAGAATGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4105507 C
1 C
4105508 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4108000 original size:45 final size:45
Alignment explanation
Indices: 4107944--4108051 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
4107934 GGCACTTGTG
* * *
4107944 TCGACCGCCATCGGCACAAGCTGGGCCCTAGTGTGGGCGGTTACC
1 TCGACCACCATCGGCACAAGCTGGGCCATAGTGCGGGCGGTTACC
* * * * * *
4107989 TTGATCACCATCGACACATGCTGGGCCATGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCATAGTGCGGGCGGTTACC
*
4108034 TCGACCACCATCAGCACA
1 TCGACCACCATCGGCACA
4108052 TGTCGAGCCC
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGGCCATAGTGCGGGCGGTTACC
Found at i:4109282 original size:136 final size:136
Alignment explanation
Indices: 4109040--4109290 Score: 290
Period size: 136 Copynumber: 1.8 Consensus size: 136
4109030 GCTTAGGTCA
* * ** *
4109040 GGAATAAACTCCATATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAG
1 GGAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTAGGCCAGAG
* * * *
4109105 AGGCAGGATGCACAAGCTGAGGATCAGCCTGGTCCCCCTCTGCGTGCTGTTGTCAGTCTGATCTT
66 AGGCAGAATGCACAAGCCGAGGATCAGACTGATCCCCCTCTGCGTGCTGTTGTCAGTCTGATCTT
4109170 AGACTG
131 AGACTG
* * * * *
4109176 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGGGTGCGGGCACTGAGTAGGCCAGAG
1 GGAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTAGGCCAGAG
* * * * * *
4109241 AGGCATAATGCGAGAA-CCGGGGAT-TGACTCGATCCCTCTCTGTGTGCTGT
66 AGGCAGAATGC-ACAAGCCGAGGATCAGACT-GATCCCCCTCTGCGTGCTGT
4109291 CGGTCTCGCT
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
135 3 0.03
136 87 0.94
137 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (136 bp):
GGAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTAGGCCAGAG
AGGCAGAATGCACAAGCCGAGGATCAGACTGATCCCCCTCTGCGTGCTGTTGTCAGTCTGATCTT
AGACTG
Found at i:4109461 original size:159 final size:159
Alignment explanation
Indices: 4109167--4109547 Score: 509
Period size: 159 Copynumber: 2.4 Consensus size: 159
4109157 TCAGTCTGAT
* * * * * *
4109167 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGGGTGCGGGCACTGAGT
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
* *
4109232 AGGCCAGAGAGGCATAATGCGAGAACCGGGGATTGACTCGATCCCTCTCTGTGTGCTGTCGGTCT
66 AGACCAGAGAGGCATAATGCGAGAACCGGGGATCGACTCGATCCCTCTCTGTGTGCTGTCGGTCT
4109297 CGCTACCACAACCCTC-GATCCGACTGGGG
131 CGCTACCACAACCCTCAG-TCCGACTGGGG
* *
4109326 CTTAGACTTGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAATGAGCGTGCAGGG-GCTCAG
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGGCACTCAG
* * * *
4109390 CCGACCGGAGAGGCATAATGCGTA-ATCCGGGTATCGACTCGATCCCTCTCTGTGTGCTGTCGGT
65 CAGACCAGAGAGGCATAATGCG-AGAACCGGGGATCGACTCGATCCCTCTCTGTGTGCTGTCGGT
*
4109454 C-CGGCTACCACAACCCTCAGTCCGGCTGGGG
129 CTC-GCTACCACAACCCTCAGTCCGACTGGGG
* * * * * *
4109485 CTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
4109548 ACCGGTCGGA
Statistics
Matches: 196, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
158 4 0.02
159 187 0.95
160 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
AGACCAGAGAGGCATAATGCGAGAACCGGGGATCGACTCGATCCCTCTCTGTGTGCTGTCGGTCT
CGCTACCACAACCCTCAGTCCGACTGGGG
Found at i:4109606 original size:159 final size:159
Alignment explanation
Indices: 4109257--4109610 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 159
4109247 AATGCGAGAA
* * * * * *
4109257 CCGGGGATTGACTCGATCCCTCTCTGTGTGCTGTCGGTCTCGCTACCACAACCCTCGATCCGACT
1 CCGGGTATCGACTAGATCCCCCCCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGATCCGACT
* * * *
4109322 GGGGCTTAGACTTGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAATGAGCGTGCAGGGGCT
66 GGGGCTTAGACATGGAATGAACTCCGTATACCCAAGCCAACCCATGAAACGAGCGTACAGGGGCT
* * * * *
4109387 CAGCCGACCGGAGAGGCATAATGCGTAAT
131 CAACCGACCGGAGAGGCAGAATACGCAAG
* * * * *
4109416 CCGGGTATCGACTCGATCCCTCTCTGTGTGCTGTCGGTC-CGGCTACCACAACCCTC-AGTCCGG
1 CCGGGTATCGACTAGATCCCCCCCTGCGTGCTGTCGGTCTC-GCTACCACAACCCTCGA-TCCGA
* *
4109479 CTGGGGCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACGAGCGTAC-GGGC
64 CTGGGGCTTAGACATGGAATGAACTCCGTATACCCAAGCCAACCCATGAAACGAGCGTACAGGG-
** *
4109543 GCTCAACCGGTCGGATAGGCAGAATACGCAAG
128 GCTCAACCGACCGGAGAGGCAGAATACGCAAG
* *
4109575 CCGAGG-ATC-AGGTAGGTCCCCCCCTGCGTGCTGTCG
1 CCG-GGTATCGA-CTAGATCCCCCCCTGCGTGCTGTCG
4109611 ATCCAACTGC
Statistics
Matches: 167, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
158 6 0.04
159 159 0.95
160 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (159 bp):
CCGGGTATCGACTAGATCCCCCCCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGATCCGACT
GGGGCTTAGACATGGAATGAACTCCGTATACCCAAGCCAACCCATGAAACGAGCGTACAGGGGCT
CAACCGACCGGAGAGGCAGAATACGCAAG
Found at i:4109685 original size:26 final size:26
Alignment explanation
Indices: 4109656--4109708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4109646 CCAGTCTGAT
4109656 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4109682 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4109708 C
1 C
4109709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4111238 original size:26 final size:26
Alignment explanation
Indices: 4111198--4111250 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4111188 TCCGATTGAT
* *
4111198 CTTAGACTGGAAATGTACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
4111224 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4111250 C
1 C
4111251 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:4111390 original size:26 final size:26
Alignment explanation
Indices: 4111360--4111414 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
4111350 TCCTACTGCA
* *
4111360 GGTCCTGCTGCCACAACCTTCAGTCT
1 GGTCCTACTACCACAACCTTCAGTCT
*
4111386 GGTCCTACTACCACAACCTTCAGTTT
1 GGTCCTACTACCACAACCTTCAGTCT
4111412 GGT
1 GGT
4111415 ACGATCTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.18, C:0.35, G:0.18, T:0.29
Consensus pattern (26 bp):
GGTCCTACTACCACAACCTTCAGTCT
Found at i:4117823 original size:26 final size:26
Alignment explanation
Indices: 4117772--4117824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4117762 TCGGTCCGAT
* * **
4117772 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
4117798 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
4117824 C
1 C
4117825 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:4118511 original size:45 final size:45
Alignment explanation
Indices: 4118453--4118553 Score: 166
Period size: 45 Copynumber: 2.2 Consensus size: 45
4118443 ACATGCACCA
* *
4118453 ACCATCATTGGCATAGGCTACCCTTTGGTATGGGCACTTACCTCG
1 ACCACCATCGGCATAGGCTACCCTTTGGTATGGGCACTTACCTCG
* *
4118498 ACCACCATCGGCATAGGCTGCCCTTTGGTATGGGCACTTGCCTCG
1 ACCACCATCGGCATAGGCTACCCTTTGGTATGGGCACTTACCTCG
4118543 ACCACCATCGG
1 ACCACCATCGG
4118554 TATAAGATGG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.19, C:0.33, G:0.24, T:0.25
Consensus pattern (45 bp):
ACCACCATCGGCATAGGCTACCCTTTGGTATGGGCACTTACCTCG
Found at i:4120485 original size:45 final size:45
Alignment explanation
Indices: 4120436--4120542 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
4120426 GTATGGGCAC
* * * *
4120436 TTGCCTCGACCGCCATCGGCACAAGTTAGGCC-CTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGAT-GGCCTCTAGTGCAGGCGG
* *
4120481 TTGCCTCGACCACCATTGGCATAAGATGGCCTCTAGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCTCTAGTGCAGGCGG
* *
4120526 TTGCATCGAACACCATC
1 TTGCCTCGACCACCATC
4120543 AACACATGCT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 4 0.08
45 48 0.92
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCTCTAGTGCAGGCGG
Found at i:4121698 original size:11 final size:11
Alignment explanation
Indices: 4121678--4121710 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
4121668 CGGTTAGGTT
4121678 CTCCGACGATG
1 CTCCGACGATG
*
4121689 CTCTGACGATG
1 CTCCGACGATG
4121700 CTCCGACGATG
1 CTCCGACGATG
4121711 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:4122086 original size:45 final size:45
Alignment explanation
Indices: 4121883--4122088 Score: 146
Period size: 45 Copynumber: 4.6 Consensus size: 45
4121873 GTATGGGCAC
* * * * *
4121883 TTGCCTCTACCGCCATCGGCACAAGCTGGGCCCC-GGTACGGGCGA
1 TTGCCTCAACCACCATCGGCACATGCT-GGCCCCTGGTGCGGGCGG
* * * * * * * * * * *
4121928 TTACCTCGATCACCATCAGTAGATGCCGGCCCTTGGTGTGGGTGA
1 TTGCCTCAACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * * *
4121973 TTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGTGG
1 TTGCCTCAACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * ** *
4122018 TTGCATCGAA-CACCCTCGGCACATGCTGGGTCGTGGTGCGGGCGG
1 TTGCCTC-AACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
4122063 TTGCCTCAACCACCATCGGCACATGC
1 TTGCCTCAACCACCATCGGCACATGC
4122089 CGAGCCCCGA
Statistics
Matches: 123, Mismatches: 35, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
44 7 0.06
45 115 0.93
46 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.20
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
Found at i:4122877 original size:26 final size:26
Alignment explanation
Indices: 4122841--4122893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4122831 CCGATCCAAT
* *
4122841 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4122867 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4122893 C
1 C
4122894 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4123896 original size:45 final size:45
Alignment explanation
Indices: 4123847--4123986 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 45
4123837 CCTTCGATCG
* *
4123847 CCATCGGCACAAGTTGGGCCTTGGTGTGGGCGGTTGCCTCGACCA
1 CCATCGGCACAAGATGGGCCTTGGTGTGGGCGGTTACCTCGACCA
* ** * * *
4123892 CCATCGGCACAAGATGGCCCTTGGTACGGGTGGTTACATCGAACA
1 CCATCGGCACAAGATGGGCCTTGGTGTGGGCGGTTACCTCGACCA
* * * * *
4123937 CCAT-GAGCACATGCTGGGCCGTGGTGTGGGCAGTTAACTCGACCA
1 CCATCG-GCACAAGATGGGCCTTGGTGTGGGCGGTTACCTCGACCA
4123982 CCATC
1 CCATC
4123987 ACCACATGCT
Statistics
Matches: 74, Mismatches: 19, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
44 1 0.01
45 73 0.99
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
CCATCGGCACAAGATGGGCCTTGGTGTGGGCGGTTACCTCGACCA
Found at i:4124811 original size:26 final size:26
Alignment explanation
Indices: 4124775--4124827 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
4124765 CTGATCTGAT
4124775 CTTAGACT-GGGACTGAACT-TCGTATG
1 CTTAGACTGGGGA-TGAACTGT-GTATG
4124801 CTTAGACTGGGGATGAACTGTGTATG
1 CTTAGACTGGGGATGAACTGTGTATG
4124827 C
1 C
4124828 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTGTGTATG
Found at i:4124997 original size:196 final size:196
Alignment explanation
Indices: 4124638--4124997 Score: 418
Period size: 196 Copynumber: 1.8 Consensus size: 196
4124628 ATGCATAAGC
* * *
4124638 CAACCCATGAAACGAGCGTACGGGTGCTCAGCCGACTAGAGAGGTAGAATGCACAAATCGGGGAT
1 CAACCCATGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGAGGAAGAATGCACAAACCGGGGAT
* * * * * * * *
4124703 CGACTCGGTCCCCCCTACGTGCTACCGATCCTACTGCTGGTCCTGCTACCATAATCCTTGATCTG
66 CGACTCGATCCCCCCTACATGCTACCGATCCCACTGCGGGTCCTGCTACCACAACCCTCGATCAG
*
4124768 ATCTGATCTTAGACTGGGACTGAACTTCGTATGCTTAGACTGGGGATGAACTGTGTATGCCAAAG
131 ATCTGATCTTAGACTGGGACTGAACTACGTATGCTTAGACTGGGGATGAACTGTGTATGCCAAAG
4124833 T
196 T
* ** ** *
4124834 CAACCCATGAAATGAGCGTGTGGGTGCTCAGCCGACCAGAGAGGCAAG-ATGTGCAAGCCGGGGA
1 CAACCCATGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGAGG-AAGAATGCACAAACCGGGGA
** * *** * *
4124898 TCGACTCGATCCCCTTTGCATGCTGTTGATCCCACTGCGGGTCCTGCTACCGCAACCCTCGGTCA
65 TCGACTCGATCCCCCCTACATGCTACCGATCCCACTGCGGGTCCTGCTACCACAACCCTCGATCA
* * * *
4124963 GGTTTGATCTTAGACTAGGGGC-GCACTACGTATGC
130 GATCTGATCTTAGACT-GGGACTGAACTACGTATGC
4124998 CTAAGTCAAC
Statistics
Matches: 132, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
196 126 0.95
197 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
CAACCCATGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGAGGAAGAATGCACAAACCGGGGAT
CGACTCGATCCCCCCTACATGCTACCGATCCCACTGCGGGTCCTGCTACCACAACCCTCGATCAG
ATCTGATCTTAGACTGGGACTGAACTACGTATGCTTAGACTGGGGATGAACTGTGTATGCCAAAG
T
Found at i:4125916 original size:45 final size:45
Alignment explanation
Indices: 4125759--4125906 Score: 181
Period size: 45 Copynumber: 3.3 Consensus size: 45
4125749 CGGGCACTTA
* *
4125759 CCTCGACCGCCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTG
1 CCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTG
* *
4125804 CCTCGACCACCATCGACACAAGGT-GGCCCTTGGTGCGGGCGGTTA
1 CCTCGACCACCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTG
* * * * * * *
4125849 CGTCAAACACCATCGGCACATGCTGGGCCGTGGTGCGAGCGGTTG
1 CCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTG
4125894 CCTCGACCACCAT
1 CCTCGACCACCAT
4125907 TGGCACATGC
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 5 0.06
45 76 0.89
46 4 0.05
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (45 bp):
CCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTG
Found at i:4127107 original size:45 final size:45
Alignment explanation
Indices: 4127030--4127142 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 45
4127020 GGTGATTGCT
* * ** *
4127030 TCGACCACCATCGGCATAAGATGGCCCCTGGTGTAGGCGGTTACA
1 TCGACCACCATCGGCATATGCTGGCCAATGGTGTAGGCGATTACA
* * * * *
4127075 TCGAACACCATCGGCATATGCTGGGCAATGGTGTGGGCGATTGCC
1 TCGACCACCATCGGCATATGCTGGCCAATGGTGTAGGCGATTACA
* *
4127120 TCGACCACCATTGGCACATGCTG
1 TCGACCACCATCGGCATATGCTG
4127143 AGCCTCGGTC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGGCATATGCTGGCCAATGGTGTAGGCGATTACA
Found at i:4127966 original size:25 final size:26
Alignment explanation
Indices: 4127938--4127987 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4127928 CCGGTCTGAT
4127938 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4127963 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4127988 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4128642 original size:13 final size:13
Alignment explanation
Indices: 4128624--4128655 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
4128614 CAGCACCCAT
4128624 CGCACATCATGTA
1 CGCACATCATGTA
4128637 CGCACATCATGTA
1 CGCACATCATGTA
4128650 CGCACA
1 CGCACA
4128656 CCCCCCGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.34, G:0.16, T:0.19
Consensus pattern (13 bp):
CGCACATCATGTA
Found at i:4128966 original size:45 final size:44
Alignment explanation
Indices: 4128917--4129055 Score: 118
Period size: 45 Copynumber: 3.1 Consensus size: 44
4128907 CTGCTATCCT
4128917 CACAAGCTGGGCCCTGGTGCAGGTGGTTGCCTCGACCACCATCGG
1 CACAAGCTGGGCCCTGGTGC-GGTGGTTGCCTCGACCACCATCGG
* * * * *
4128962 CACAAGATGGCCCCCGATGTG-GGCGGTTGCATCGACCACCATCGG
1 CACAAGCTGGGCCCTG--GTGCGGTGGTTGCCTCGACCACCATCGG
* * ** * * * *
4129007 CACATGCTTGGCTGTAGTGCGGTCAGTTGCCTCGACCATCATCGA
1 CACAAGCTGGGCCCTGGTGCGGT-GGTTGCCTCGACCACCATCGG
4129052 CACA
1 CACA
4129056 TGTCGAGCCC
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
43 3 0.04
44 2 0.03
45 64 0.89
47 3 0.04
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (44 bp):
CACAAGCTGGGCCCTGGTGCGGTGGTTGCCTCGACCACCATCGG
Found at i:4129463 original size:25 final size:25
Alignment explanation
Indices: 4129435--4129498 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
4129425 AATCTTAGAT
4129435 TGGGAATGAACTCCGATGCTTAAAC
1 TGGGAATGAACTCCGATGCTTAAAC
*
4129460 TGGGAATGAACTCCGATGCTTAGAC
1 TGGGAATGAACTCCGATGCTTAAAC
4129485 TGGGAATGAACTCC
1 TGGGAATGAACTCC
4129499 ATATGCCTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (25 bp):
TGGGAATGAACTCCGATGCTTAAAC
Found at i:4129835 original size:26 final size:26
Alignment explanation
Indices: 4129806--4129858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4129796 CCGATCTGAT
*
4129806 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
4129832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4129858 C
1 C
4129859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4131480 original size:26 final size:26
Alignment explanation
Indices: 4131446--4131496 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4131436 TTGGTACAAT
*
4131446 CTTATACTGAGAATGAACTCGGTATG
1 CTTAGACTGAGAATGAACTCGGTATG
* *
4131472 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGAGAATGAACTCGGTAT
4131497 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCGGTATG
Found at i:4131832 original size:26 final size:26
Alignment explanation
Indices: 4131803--4131880 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
4131793 CGGTCCGATA
*
4131803 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
4131829 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4131855 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4131881 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:4132053 original size:26 final size:26
Alignment explanation
Indices: 4132024--4132079 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
4132014 CCGGTCCAAT
4132024 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
4132050 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
4132076 CTTA
1 CTTA
4132080 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:4132065 original size:222 final size:222
Alignment explanation
Indices: 4131640--4132079 Score: 607
Period size: 222 Copynumber: 2.0 Consensus size: 222
4131630 GCTTAGAAAT
* * *
4131640 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGGCACAGCCGGCCAGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGC-GGGGCACAGCCGACCAGAG
* * * * *
4131705 AGGCAAAATGTCCAAGTCGGGGATCGGCCCGGTCCCTCCCTGCGTGCTGTCGATCCTGCTGCTAG
65 AGCCAAAATGTCCAAGCCGGGGATAGGCCCGGTCCCTCCCTGCGTACTATCGATCCTGCTGCTAG
*** * * *
4131770 TCCTGCTACTGTAACCCTCAGTTCGGTCCGATATTAGACTGGGAATGAACTTCGTATGCTTAGAC
130 TCCTGCTACCACAACCCTCAGTCCGGTCCAATATTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
4131835 TGGGGATGAACTCCATATGCTTAGACTG
195 TAGGGATGAACTCCATATGCTTAGACTG
* * *
4131863 GGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGC-GGGCATTCAGTCGACCAGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGGCA--CAGCCGACCAGA
* * *
4131927 GAGCCAGAATG-CACAAGCCGGGGATAGGCTCGGTCCC-CCCTGCGTACTATCGATCCTGTTGCT
64 GAGCCAAAATGTC-CAAGCCGGGGATAGGCCCGGTCCCTCCCTGCGTACTATCGATCCTGCTGCT
* *
4131990 GGTCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
128 AGTCCTGCTACCACAACCCTCAGTCCGGTCCAATATTAGACTGGGAATGAACTCCGTATGCTTAG
*
4132055 ACTAGGGATGAACTCCGTATGCTTA
193 ACTAGGGATGAACTCCATATGCTTA
4132080 AGTCAACCCA
Statistics
Matches: 190, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
221 5 0.03
222 104 0.55
223 81 0.43
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (222 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGGCACAGCCGACCAGAGA
GCCAAAATGTCCAAGCCGGGGATAGGCCCGGTCCCTCCCTGCGTACTATCGATCCTGCTGCTAGT
CCTGCTACCACAACCCTCAGTCCGGTCCAATATTAGACTGGGAATGAACTCCGTATGCTTAGACT
AGGGATGAACTCCATATGCTTAGACTG
Found at i:4132192 original size:196 final size:196
Alignment explanation
Indices: 4131828--4132225 Score: 462
Period size: 196 Copynumber: 2.0 Consensus size: 196
4131818 ACTTCGTATG
*
4131828 CTTAGACTGGGGATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
4131893 ATAAAACGAGCGTGCGGGCATTCAGTCGACCAGAGAGCCAGAATGCACAAGCCGGGGATAGGCTC
66 ACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGCCAGAATGCACAAGCCAGGGATAGACCC
* * ***
4131958 GGTCCCCCCTGCGTACTATCGATCCTGTTGCTGGTCCTGCT-ACCACAACCCTCAGTCCGGTCCA
131 GATCCCCCCTACGTACTATCGATCCCACTGCTGGTCCTGCTGACCA-AACCCTCAGTCCGGTCCA
4132022 AT
195 AT
* *
4132024 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG-ATGAACTCCGTATGCTTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * **
4132088 CACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGGATGTGCAAGCCAGGGATCA-AC
65 CACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGCCAGAATGCACAAGCCAGGGAT-AGAC
* * * * * * *
4132152 CCGATCCCCTCTATGTGCTGTCGATCCCACTG-TGGGTCCTGCTGTCGAAACCCTCGGTCCGGTC
129 CCGATCCCCCCTACGTACTATCGATCCCACTGCT-GGTCCTGCTGACCAAACCCTCAGTCCGGTC
**
4132216 TGAT
193 CAAT
4132220 CTTAGA
1 CTTAGA
4132226 TCGAGAGCAC
Statistics
Matches: 168, Mismatches: 30, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
195 1 0.01
196 161 0.96
197 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGCCAGAATGCACAAGCCAGGGATAGACCC
GATCCCCCCTACGTACTATCGATCCCACTGCTGGTCCTGCTGACCAAACCCTCAGTCCGGTCCAA
T
Found at i:4133081 original size:45 final size:44
Alignment explanation
Indices: 4132983--4133222 Score: 162
Period size: 45 Copynumber: 5.3 Consensus size: 44
4132973 ATATGCATCG
* * * *
4132983 ACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGC-ACTTGCCTCG
1 ACCACCATCGGCACAAGCTGGCCC--TGGTGCGGGCGA-TTGCCTCC
** * *
4133028 ACTGCCATCGACACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTCC
1 ACCACCATCGGCACAAGCT-GGCCCTGGTGCGGGCGATTGCCTCC
* * * * * *
4133073 ATCACCATCGGCACATGCCGGCCCTTGGTGTGGGCGATTGTCTTC
1 ACCACCATCGGCACAAGCTGGCCC-TGGTGCGGGCGATTGCCTCC
* * * * *
4133118 ACCACCATCGGCATAAGATGGCCTCTGTTGCGGGCGATTGCATCGG
1 ACCACCATCGGCACAAGCTGGCC-CTGGTGCGGGCGATTGCCTC-C
* * * * *
4133164 A-CACCATCGGCACACGCTGGGCTCTGGTACGGGCGGTTGCCTCG
1 ACCACCATCGGCACAAGCT-GGCCCTGGTGCGGGCGATTGCCTCC
*
4133208 ACCACCATCGACACA
1 ACCACCATCGGCACA
4133223 TGCCGAACCA
Statistics
Matches: 149, Mismatches: 38, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
44 7 0.05
45 133 0.89
46 5 0.03
47 4 0.03
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (44 bp):
ACCACCATCGGCACAAGCTGGCCCTGGTGCGGGCGATTGCCTCC
Found at i:4133663 original size:26 final size:26
Alignment explanation
Indices: 4133627--4133679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4133617 TCGGTCCAAT
*
4133627 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4133653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4133679 C
1 C
4133680 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4133887 original size:159 final size:167
Alignment explanation
Indices: 4133652--4134142 Score: 466
Period size: 170 Copynumber: 3.0 Consensus size: 167
4133642 AACTTCGTAT
* * *
4133652 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTGAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAA
** * * *
4133717 CAGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGT-CCCCCT-C-TG-TGT-G-CTG
66 CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGCCTG
* * *
4133776 C-C-AGTCCTGCTGCCACAACCCTCGGT-TCGGCTAGG
131 CGCTAGTCCTGCTGCCACAACCCTCGGTCTAGGCCA-A
* * * *
4133811 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
4133875 ACCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGGTC
65 ACAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTC-G-C
* * *
4133940 CTGCTGCTGGTCCTGTTGCCACAACCCTCGGTCTAGTCCAA
128 CTGC-GCTAGTCCTGCTGCCACAACCCTCGGTCTAGGCCAA
* * *
4133981 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA-
* * * * * * ** * *
4134046 CCAG-CCAAAGGGGCA-AGATGCACAAGCCAGGGATTGACCTAGTCCCCTCTGCATGCTATCGAT
65 ACAGACCAGAGAGGCAGA-ATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCG--
* * * *
4134109 CCCGCTGCGAGTCCTGCTGTCGCAACCCTCGGTC
127 CCTGC-GCTAGTCCTGCTGCCACAACCCTCGGTC
4134143 CGGTCCGATC
Statistics
Matches: 269, Mismatches: 46, Indels: 23
0.80 0.14 0.07
Matches are distributed among these distances:
159 91 0.34
160 7 0.03
161 1 0.00
162 2 0.01
163 3 0.01
165 1 0.00
167 4 0.01
169 4 0.01
170 150 0.56
171 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (167 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAA
CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGCCTG
CGCTAGTCCTGCTGCCACAACCCTCGGTCTAGGCCAA
Found at i:4140868 original size:45 final size:43
Alignment explanation
Indices: 4140817--4140956 Score: 111
Period size: 45 Copynumber: 3.1 Consensus size: 43
4140807 ACTGCCATGA
*
4140817 GCACAAGCTAGGCCCTGGTGCAGGCAGTTACCTCAACCACCATCG
1 GCACAAGCT-GGCCCTGGTGCAGGC-GTTGCCTCAACCACCATCG
* * *
4140862 GCACAAGATGGCCCCTGGGGCAGGCGATTGCATCGAA-CACCATCG
1 GCACAAGCTGG-CCCTGGTGCAGGCG-TTGCCTC-AACCACCATCG
* * * * * * *
4140907 GCACATGCTGGGTCGTGTTGCAGGCGGTTGCCTCGACCATCATCA
1 GCACAAGCT-GGCCCTGGTGCAGGC-GTTGCCTCAACCACCATCG
4140952 GCACA
1 GCACA
4140957 TGTCGAGCCC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
44 4 0.05
45 66 0.88
46 5 0.07
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (43 bp):
GCACAAGCTGGCCCTGGTGCAGGCGTTGCCTCAACCACCATCG
Found at i:4141434 original size:26 final size:26
Alignment explanation
Indices: 4141398--4141450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4141388 CCGGTCTGAT
*
4141398 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4141424 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4141450 C
1 C
4141451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4141789 original size:26 final size:26
Alignment explanation
Indices: 4141753--4141805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4141743 CCAGTCTGAT
4141753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4141779 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4141805 C
1 C
4141806 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4142909 original size:45 final size:45
Alignment explanation
Indices: 4142709--4142906 Score: 175
Period size: 45 Copynumber: 4.4 Consensus size: 45
4142699 GGCACATTCA
* * * *
4142709 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGC-ACTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCC-CTGGTGCGGGCGA-TTGCC
* * * * * * *
4142754 TCAACCGCCATCGACACAAGCTGGGCCCTGATGCGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGATTGCC
* * * * * *
4142799 TTGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGTGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGATTGCC
* * * *
4142844 TCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGATTGCC
4142889 TCGACCACCATCGGCACA
1 TCGACCACCATCGGCACA
4142907 TGCCCAGGCC
Statistics
Matches: 120, Mismatches: 31, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
45 117 0.98
46 3 0.03
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGATTGCC
Found at i:4145454 original size:44 final size:45
Alignment explanation
Indices: 4145351--4145464 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 45
4145341 TGCGGGTGAC
* * * *
4145351 TGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTACGGGCAGT
1 TGCCTCAACCACCATTGGCACATGTTGGCCCCTGGTACGGACAGT
* * * *
4145396 TGCATCGAA-GACCATTGGCACATGTTGG-CCGTGGTACGGACGGT
1 TGCCTC-AACCACCATTGGCACATGTTGGCCCCTGGTACGGACAGT
* *
4145440 TGCCTCAACCACCATCGGCATATGT
1 TGCCTCAACCACCATTGGCACATGT
4145465 CAAGCCCTGG
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
43 2 0.04
44 31 0.56
45 21 0.38
46 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (45 bp):
TGCCTCAACCACCATTGGCACATGTTGGCCCCTGGTACGGACAGT
Found at i:4145939 original size:26 final size:26
Alignment explanation
Indices: 4145903--4145955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4145893 TCGATCTGAT
* *
4145903 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4145929 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4145955 C
1 C
4145956 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4146131 original size:159 final size:158
Alignment explanation
Indices: 4145928--4146292 Score: 396
Period size: 159 Copynumber: 2.3 Consensus size: 158
4145918 AACTCCGTAT
* * * ** * *
4145928 GCTTAGACTGGGAATGAACTCCATATGCCTACG-TCAACCAACGAAATGAGCGTGCAGGCATTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACAAGCATGCAGGCACTGA
*** * *** * *
4145992 GCCGGCC-AGAGAGGCATAATGTGCAAGTCGGGGATCGGCCC-GATCCCCCTCTACATGCTGCCG
64 GCAAACCGA-AGAGGCATAATGTGCAAGCCAAAGATCGGCCCAG-TCCCCCTCTACATACTACCG
4146055 GTCCCGTTGCCACAACCCTC-GATCCGGTCGGG
127 GTCCCGTTGCCACAACCCTCAG-TCCGGTCGGG
* *
4146087 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCATGCGGGCGCTGAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCATGCAGGCACTGAG
* * * * *
4146152 CAAATCGAAGAGGCATAATGTGCAAGCCAAAGATTGGCTCAGTCCCCCTCTACGTACTACCTGTC
65 CAAACCGAAGAGGCATAATGTGCAAGCCAAAGATCGGCCCAGTCCCCCTCTACATACTACCGGTC
* **
4146217 CCGTTGCTACAACCCTCAGTCTTGTCGGG
130 CCGTTGCCACAACCCTCAGTCCGGTCGGG
*
4146246 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAAC
4146293 GAACATTCGG
Statistics
Matches: 173, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
159 168 0.97
160 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCATGCAGGCACTGAGC
AAACCGAAGAGGCATAATGTGCAAGCCAAAGATCGGCCCAGTCCCCCTCTACATACTACCGGTCC
CGTTGCCACAACCCTCAGTCCGGTCGGG
Found at i:4146357 original size:159 final size:159
Alignment explanation
Indices: 4145998--4146357 Score: 424
Period size: 159 Copynumber: 2.3 Consensus size: 159
4145988 TTGAGCCGGC
* *
4145998 CAGAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTACATGCTGCCGGTCCCGTT
1 CAGAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTACATACTACCGGTCCCGTT
*
4146063 GCCACAACCCTCGATCCGGTCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCA
66 GCCACAACCCTCGATCCGGTCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
*
4146128 CGAAACAAGCATGCGGGCGCTGAGCAAAT
131 CGAAACAAGCATGCGGGCGCTCAGCAAAT
* *** * * * *
4146157 C-GAAGAGGCATAATGTGCAAGCCAAAGATTGGCTC-AGTCCCCCTCTACGTACTACCTGTCCCG
1 CAG-AGAGGCATAATGTGCAAGTCGGGGATCGGCCCGA-TCCCCCTCTACATACTACCGGTCCCG
* ** *
4146220 TTGCTACAACCCTC-AGTCTTGTCGGGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
64 TTGCCACAACCCTCGA-TCCGGTCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * **
4146284 CCACGAAACGAA-CATTCGGGTGCTCAGTC-GGT
128 CCACGAAAC-AAGCATGCGGGCGCTCAG-CAAAT
* * * *
4146316 CAGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCC
1 CAGAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCC
4146358 TTCTGCTTAC
Statistics
Matches: 164, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 3 0.02
159 156 0.95
160 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CAGAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTACATACTACCGGTCCCGTT
GCCACAACCCTCGATCCGGTCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACAAGCATGCGGGCGCTCAGCAAAT
Found at i:4146435 original size:26 final size:26
Alignment explanation
Indices: 4146406--4146458 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4146396 CCGGTCTAAT
4146406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4146432 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4146458 C
1 C
4146459 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4147274 original size:136 final size:136
Alignment explanation
Indices: 4147040--4147287 Score: 327
Period size: 136 Copynumber: 1.8 Consensus size: 136
4147030 CTTAGATCGA
*
4147040 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGATCGAAAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGATCCAAAA
* * * * * *
4147105 GGTAGGATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTTTACGTGCTACTGTCGGTTCTATCTTA
66 GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACTGTCGGTTCTATCTTA
4147170 GACTGG
131 GACTGG
* * ** * *
4147176 GAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGTGCTTAGCCG-TCCAGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGATCCA-AA
* * * *
4147240 AGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCT
65 AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCT
4147288 GTCGATCCCG
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
135 3 0.03
136 91 0.97
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (136 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGATCCAAAA
GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACTGTCGGTTCTATCTTA
GACTGG
Found at i:4147525 original size:26 final size:26
Alignment explanation
Indices: 4147496--4147548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4147486 CCGGTTTGAT
4147496 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
* *
4147522 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
4147548 C
1 C
4147549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:4148742 original size:45 final size:44
Alignment explanation
Indices: 4148491--4148739 Score: 230
Period size: 45 Copynumber: 5.5 Consensus size: 44
4148481 GTACGGCCAC
** *
4148491 TTGCCTCGACTGCCATCGGCACAAGCTGGTCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGG-CCCTGGTGCGGGCGG
* * * * * * *
4148536 TTGCCTTGATCACCATCGACACATG-TCGACCCTTGGTGTGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCC-TGGTGCGGGCGG
* *
4148581 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGG-CCCTGGTGCGGGCGG
* * *
4148626 TTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGG-CCCTGGTGC-GGGCGG
* * * * * *
4148672 TTGCATCGAACATCATCGGCACATGCTAGGTCGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGGGCGG
*
4148717 TTGCCTCGACCATCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
4148740 TGCCGAGCCC
Statistics
Matches: 168, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
44 3 0.02
45 127 0.76
46 36 0.21
47 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCGGGCGG
Found at i:4149218 original size:26 final size:26
Alignment explanation
Indices: 4149182--4149234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4149172 CCGATCCGAT
* *
4149182 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4149208 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4149234 C
1 C
4149235 CTAAAACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4149575 original size:26 final size:26
Alignment explanation
Indices: 4149539--4149591 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4149529 CCAATCTGAA
4149539 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4149565 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4149591 C
1 C
4149592 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4150627 original size:45 final size:45
Alignment explanation
Indices: 4150522--4150627 Score: 113
Period size: 45 Copynumber: 2.4 Consensus size: 45
4150512 GGCTGCCCTT
* * * * * * *
4150522 TGGTACGCGCACTTGCCTCGATCACCATCGGCATAAGCTGGGCCC
1 TGGTACGAGCAGTTGCCTAGACCACCATCGGCACAAGATGGCCCC
* *
4150567 TGGTGCGAGCGGTTGCCTAGACCACCATCGGCACAAGATGGCCCC
1 TGGTACGAGCAGTTGCCTAGACCACCATCGGCACAAGATGGCCCC
* *
4150612 TGGTATGGGCAGTTGC
1 TGGTACGAGCAGTTGC
4150628 ATCGAACAGC
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
TGGTACGAGCAGTTGCCTAGACCACCATCGGCACAAGATGGCCCC
Found at i:4151703 original size:45 final size:45
Alignment explanation
Indices: 4151630--4151837 Score: 161
Period size: 45 Copynumber: 4.6 Consensus size: 45
4151620 GTACATGCAC
* * *
4151630 TTGCCACGACCACCATCTG-CATAAGCTGGGCCCTGGTG-GGGCCGG
1 TTGCCTCGACCACCATC-GACACATGCTGGGCCCTGGTGCGGG-CGG
* * **
4151675 TTGCCTCGATCACCATCGACACATGCT-GGCCCTTGGTGTGGGCAA
1 TTGCCTCGACCACCATCGACACATGCTGGGCCC-TGGTGCGGGCGG
* * * * * *
4151720 TTGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCGGGCGG
* * * ** * * *
4151765 TTGCATCGAACACTATCGGTACATGCTGGGCCATGGTACGGTCGG
1 TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCGGGCGG
* *
4151810 TTACCTCGACCACCATCAACACATGCTG
1 TTGCCTCGACCACCATCGACACATGCTG
4151838 AGCCTTGCTT
Statistics
Matches: 124, Mismatches: 35, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
44 6 0.05
45 111 0.90
46 7 0.06
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCGGGCGG
Found at i:4151724 original size:90 final size:90
Alignment explanation
Indices: 4151630--4151793 Score: 204
Period size: 90 Copynumber: 1.8 Consensus size: 90
4151620 GTACATGCAC
* * * * * * * *
4151630 TTGCCACGACCACCATCTGCATAAGCTGGGCCCTGGTG-GGGCCGGTTGCCTCGATCACCATCGA
1 TTGCCACAACCACCATCGGCACAAGATGGCCCCTGGTGCAGG-CGGTTGCATCGAACACCATCGA
4151694 CACATGCTGGCCCTTGGTGTGGGCAA
65 CACATGCTGGCCCTTGGTGTGGGCAA
* * **
4151720 TTGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACTATCGGT
1 TTGCCACAACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGAC
4151785 ACATGCTGG
66 ACATGCTGG
4151794 GCCATGGTAC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
90 59 0.97
91 2 0.03
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.21
Consensus pattern (90 bp):
TTGCCACAACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGAC
ACATGCTGGCCCTTGGTGTGGGCAA
Found at i:4152458 original size:45 final size:45
Alignment explanation
Indices: 4152409--4152534 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 45
4152399 CGAGCACTTG
* * * * * **
4152409 CCTTGACCACCATCGGCATAGGATGGGCCCTAGTATGGGTAGTTA
1 CCTTGATCACCATCAGCACAAGATGGCCCCTAGTACAGGTAGTTA
* *
4152454 CCTTGATCACCATCAGCACAAGATGGCCCCTGGTACAGGTGGTTA
1 CCTTGATCACCATCAGCACAAGATGGCCCCTAGTACAGGTAGTTA
* *
4152499 CCTCGATCACCATCAGCACAAGATGGCCCCTGGTAC
1 CCTTGATCACCATCAGCACAAGATGGCCCCTAGTAC
4152535 GGGCGATTGC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (45 bp):
CCTTGATCACCATCAGCACAAGATGGCCCCTAGTACAGGTAGTTA
Found at i:4152555 original size:45 final size:45
Alignment explanation
Indices: 4152461--4152563 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 45
4152451 TTACCTTGAT
* * * *
4152461 CACCATCAGCACAAGATGGCCCCTGGTACAGGTGGTTACCTCGAT
1 CACCATCAGCACAAGATGGCCCCTGGTACAGGCGATTACATCGAA
* *
4152506 CACCATCAGCACAAGATGGCCCCTGGTACGGGCGATTGCATCGAA
1 CACCATCAGCACAAGATGGCCCCTGGTACAGGCGATTACATCGAA
*
4152551 CACCATCGGCACA
1 CACCATCAGCACA
4152564 TGCTAGGCCG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (45 bp):
CACCATCAGCACAAGATGGCCCCTGGTACAGGCGATTACATCGAA
Found at i:4152597 original size:776 final size:774
Alignment explanation
Indices: 4151101--4152617 Score: 2157
Period size: 776 Copynumber: 2.0 Consensus size: 774
4151091 GTAGTTCGGC
* *
4151101 ATTTTTTAAAATTTTTTTAGAAAGAGTTTTGGCCCCAAATTCGGTAGATGTGATCCTTGTATTTT
1 ATTTTTCAAAATTTTTTTAGAAAGAGTTTTGGCCCCAAATTCGGTAGATGTGATCCTTCTATTTT
* *
4151166 TGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAA
66 TGTTGGCACGCACAAAAAACTTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAA
*
4151231 AAAAATGTCCCCATTTCAGACACTTTAATGGCTAATGGGAGCAAACCTAAAAAATCTCAAATGCT
131 AAAAATGTCCCAATTTCAGACACTTTAATGGCTAATGGGAGCAAACCTAAAAAATCTCAAATGCT
*
4151296 CTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
196 CTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
4151361 TAGCACCCACGCACATCATGTGCGCACACCCCCGGCCCCCCAATCACCGAAACCCCCAATGCCGT
261 CAGCACCCACGCACATCATGTGCGCACACCCCCGCCCCCCCAATCACCGAAACCCCCAATGCCGC
* ** * *
4151426 AGATTAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAATGTGGCACCAGCAC
326 AGATTAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGACGAAAAAAATGTGGCACCAGCAC
* * * *
4151491 ATGCTCGAGCCCAGCATGTGCACCGTGGCTCAAAATTGAACTTTGGCAAAGGCCTCGACCATCAG
391 ATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATTGAACTTCGACAAAGGCCTCGACCATCAA
*
4151556 TGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTGCCCTTTGG
456 TGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTACCCTTTGG
* * * * *
4151621 TACATGCACTTGCCACGACCACCATCTGCATAAGCTGGGCCCTGGTGGGGCCGGTTGCCTCGATC
521 TACATGCACTTGCCACGACCACCATCGGCATAAGATGGGCCCTAGTGGGGCCAGTTACCTCGATC
* * * *** * *
4151686 ACCATCGACACATGCTGGCCCTTGGTGTGGGCAATTGCCTCAACCACCATCGGCACAAGATGGCC
586 ACCATCGACACAAGATGGCCCCTGGTACAGGCAATTACCTCAACCACCATCAGCACAAGATGGCC
* * * * * *
4151751 CCTGGTGCAGGCGGTTGCATCGAACACTATCGGTACATGCTGGGCCATGGTACGGTCGGTTACCT
651 CCTGGTACAGGCGATTGCATCGAACACCATCGGCACATGCTAGGCCATGGTACGGGCGGTTACCT
4151816 CGACCACCATCAACACATGCTGAGCCTTGCTTGGCCCCTGAAACTTTTTGCAGTTCAAG
716 CGACCACCATCAACACATGCTGAGCCTTGCTTGGCCCCTGAAACTTTTTGCAGTTCAAG
* * *
4151875 ATTTTTCAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAATTTGGTAGATGTGATCTTTCTATTTT
1 ATTTTTCAAAATTTTTTTAGAAAGAGTTTTGGCCCCAAATTCGGTAGATGTGATCCTTCTATTTT
**
4151940 TGTTGGCACGCACAAACAAA-TTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGATTGTTTG-
66 TGTTGGCACGCACAAA-AAACTTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGA
* * * * **
4152003 AAAAATTGTCCCAATTTCAGACACTTTAATGGCTACTGGGAGCAAACCTATAAAATTTTGAATGC
130 AAAAAATGTCCCAATTTCAGACACTTTAATGGCTAATGGGAGCAAACCTAAAAAATCTCAAATGC
*
4152068 TCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
195 TCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** *
4152133 CCAGCGCCCATCGCACATCATGTGCAG-ACACCCCTCGACCCCCCCAATCGTCGGAACCCCCAAT
260 CCAGCACCCA-CGCACATCATGTGC-GCACACCCC-CG-CCCCCCCAATCACCGAAACCCCCAAT
* * * * * * ** *
4152197 TCTGCCGGTTAGGTTCTCTAACGATGCTCTGGTGATGGTGCCCCAGATGAAAAAAATGTGGCACC
321 GCCGCAGATTAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGACGAAAAAAATGTGGCACC
* *
4152262 AGCACATGCCCGA-CGCCAGCATGTGCACCGTGGCTCAAAATTGAACTTCGACCAAGGCCTCGAT
386 AGCACATGCCCGAGC-CCAGCATGTGCACCGTGGCTCAAAATTGAACTTCGACAAAGGCCTCGAC
4152326 CATCAATGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTACC
450 CATCAATGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTACC
** * * *
4152391 CTTTGGTACGA-GCACTTGCCTTGACCACCATCGGCATAGGATGGGCCCTAGTATGGG-TAGTTA
515 CTTTGGTAC-ATGCACTTGCCACGACCACCATCGGCATAAGATGGGCCCTAGT-GGGGCCAGTTA
* *** * *
4152454 CCTTGATCACCATC-AGCACAAGATGGCCCCTGGTACAGGTGGTTACCTCGATCACCATCAGCAC
578 CCTCGATCACCATCGA-CACAAGATGGCCCCTGGTACAGGCAATTACCTCAACCACCATCAGCAC
* * *
4152518 AAGATGGCCCCTGGTACGGGCGATTGCATCGAACACCATCGGCACATGCTAGGCCGTGGTGCGGG
642 AAGATGGCCCCTGGTACAGGCGATTGCATCGAACACCATCGGCACATGCTAGGCCATGGTACGGG
* ** *
4152583 CGGTTGCCTCGACCACCATCGGCATATGCTGAGCC
707 CGGTTACCTCGACCACCATCAACACATGCTGAGCC
4152618 CTGATCGACC
Statistics
Matches: 651, Mismatches: 83, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
773 129 0.20
774 136 0.21
775 8 0.01
776 374 0.57
777 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.24
Consensus pattern (774 bp):
ATTTTTCAAAATTTTTTTAGAAAGAGTTTTGGCCCCAAATTCGGTAGATGTGATCCTTCTATTTT
TGTTGGCACGCACAAAAAACTTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAA
AAAAATGTCCCAATTTCAGACACTTTAATGGCTAATGGGAGCAAACCTAAAAAATCTCAAATGCT
CTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCACGCACATCATGTGCGCACACCCCCGCCCCCCCAATCACCGAAACCCCCAATGCCGC
AGATTAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGACGAAAAAAATGTGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATTGAACTTCGACAAAGGCCTCGACCATCAA
TGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTACCCTTTGG
TACATGCACTTGCCACGACCACCATCGGCATAAGATGGGCCCTAGTGGGGCCAGTTACCTCGATC
ACCATCGACACAAGATGGCCCCTGGTACAGGCAATTACCTCAACCACCATCAGCACAAGATGGCC
CCTGGTACAGGCGATTGCATCGAACACCATCGGCACATGCTAGGCCATGGTACGGGCGGTTACCT
CGACCACCATCAACACATGCTGAGCCTTGCTTGGCCCCTGAAACTTTTTGCAGTTCAAG
Found at i:4153067 original size:26 final size:26
Alignment explanation
Indices: 4153038--4153090 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4153028 CCGGTCCGAT
4153038 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4153064 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4153090 C
1 C
4153091 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4153480 original size:159 final size:159
Alignment explanation
Indices: 4153063--4153481 Score: 457
Period size: 159 Copynumber: 2.6 Consensus size: 159
4153053 AACTCCGTAT
* * * * * *
4153063 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAATCCATGAAACGAGCATGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
4153127 GTCGGCCAGAGAGGAATAATGCA-TAAGCCAGGGATTGGCCCGGTCCCCCTCTACGTGCTATCGA
65 GTCGGCCAGAGAGGCAGAATGCACT-AGCCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGA
* * *
4153191 TCCCACTGCCACAATCCTCGATCCGGCTAGG
129 TCCCACTGCCACAACCCTAGATCCGACTAGG
* * * * *
4153222 GCTTAGACATGGAATGAACTACGTATACCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
4153287 TAGGTCGGAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGTTGTCGGTC
66 TCGGCCAGAGAGGCAGAATGCACTAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGATC
* *
4153352 CCGCTGCCACAACCCTTAG-TTCGACTAGG
131 CCACTGCCACAACCC-TAGATCCGACTAGG
* ** *
4153381 GCTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* *
4153446 TCGGCCAGTGAGGCAGAATGCACTGGCCGGGGATCG
66 TCGGCCAGAGAGGCAGAATGCACTAGCCGGGGATCG
4153482 GATCGATCCC
Statistics
Matches: 209, Mismatches: 48, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
159 206 0.99
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
TCGGCCAGAGAGGCAGAATGCACTAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGATC
CCACTGCCACAACCCTAGATCCGACTAGG
Found at i:4153603 original size:26 final size:26
Alignment explanation
Indices: 4153555--4153605 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4153545 GATCCAATCC
**
4153555 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
4153581 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
4153606 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:4154584 original size:45 final size:44
Alignment explanation
Indices: 4154535--4154735 Score: 159
Period size: 45 Copynumber: 4.5 Consensus size: 44
4154525 ACGGGCACTA
* *
4154535 GCCTCGACCGCCATCAACACAAGCTAGGCCCTGGTACGGGCGGTT
1 GCCTCGACCACCATCAGCACAAGCT-GGCCCTGGTACGGGCGGTT
* * * * * * *
4154580 GCCTCGATCACCATCAGCACATGCCGGTCCTTGGTATGGGTGATT
1 GCCTCGACCACCATCAGCACAAGCTGG-CCCTGGTACGGGCGGTT
* ** * *
4154625 GCCTTGACCACCATTGGCACAAGATTGCCCTAGGTACGGGCGGTT
1 GCCTCGACCACCATCAGCACAAGCTGGCCCT-GGTACGGGCGGTT
* * * * * *
4154670 GCATCGAACACCATCGGCACATGCTGGGCCGTGGTACGGGTGGTT
1 GCCTCGACCACCATCAGCACAAGCT-GGCCCTGGTACGGGCGGTT
* * *
4154715 GCCTCAACTACCATCGGCACA
1 GCCTCGACCACCATCAGCACA
4154736 TGTCAAGCCC
Statistics
Matches: 119, Mismatches: 34, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
44 5 0.04
45 110 0.92
46 4 0.03
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.20
Consensus pattern (44 bp):
GCCTCGACCACCATCAGCACAAGCTGGCCCTGGTACGGGCGGTT
Found at i:4154728 original size:90 final size:89
Alignment explanation
Indices: 4154562--4154735 Score: 231
Period size: 90 Copynumber: 1.9 Consensus size: 89
4154552 CACAAGCTAG
* * * * *
4154562 GCCCTGGTACGGGCGGTTGCCTCGATCACCATCAGCACATGCCGGTCCTTGGTATGGGTGATTGC
1 GCCCTGGTACGGGCGGTTGCATCGAACACCATCAGCACATGCCGGGCCGTGGTACGGGTGATTGC
** *
4154627 CTTGACCACCATTGGCACAAGATT
66 CTCAACCACCATCGGCACAAGATT
* * *
4154651 GCCCTAGGTACGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTACGGGTGGTTG
1 GCCCT-GGTACGGGCGGTTGCATCGAACACCATCAGCACATGCCGGGCCGTGGTACGGGTGATTG
*
4154716 CCTCAACTACCATCGGCACA
65 CCTCAACCACCATCGGCACA
4154736 TGTCAAGCCC
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
89 5 0.07
90 67 0.93
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (89 bp):
GCCCTGGTACGGGCGGTTGCATCGAACACCATCAGCACATGCCGGGCCGTGGTACGGGTGATTGC
CTCAACCACCATCGGCACAAGATT
Found at i:4156550 original size:45 final size:45
Alignment explanation
Indices: 4156501--4156701 Score: 136
Period size: 45 Copynumber: 4.5 Consensus size: 45
4156491 GTACGGGCAC
* * *
4156501 TTGCCTCTACCACCATCGACACAAGCTGGGCCCTGGTGGGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGA
* * * * * *
4156546 TTGCCTCGATCACCAAT-GGCACATGC-CGACCCTCGGTGCGAGCGA
1 TTGCCTCGACCACC-ATCGACACAAGCTGGGCCCT-GGTGCGGGCGA
* * * * * * * * *
4156591 TTGCCTCAACCATCATTGGCACAAGATGGCCCCTAGTACGGGTGA
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGA
* * * * * * * *
4156636 TTACATCGAACACCATCGACACATGCTGGGCCGTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGA
4156681 TTGCCTCGACCACCATCGACA
1 TTGCCTCGACCACCATCGACA
4156702 AATGCCGAGC
Statistics
Matches: 114, Mismatches: 38, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
44 7 0.06
45 100 0.88
46 7 0.06
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGA
Found at i:4157185 original size:25 final size:26
Alignment explanation
Indices: 4157146--4157196 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
4157136 CAGTCCGATT
4157146 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
*
4157172 TTAGACT-GGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
4157197 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:4157449 original size:26 final size:26
Alignment explanation
Indices: 4157413--4157465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4157403 CCGGTCAGAT
*
4157413 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
4157439 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
4157465 C
1 C
4157466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:4158467 original size:45 final size:45
Alignment explanation
Indices: 4158418--4158528 Score: 143
Period size: 45 Copynumber: 2.5 Consensus size: 45
4158408 GTACGAGCAC
* * * * *
4158418 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCAG
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGTGGGCAG
4158463 TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGTGGGC-G
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGTGGGCAG
* *
4158507 ATTGCATCGAACACCATCGACA
1 -TTGCCTCGACCACCATCGACA
4158529 TATGTCGAGC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 57 0.98
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGTGGGCAG
Found at i:4159355 original size:26 final size:26
Alignment explanation
Indices: 4159326--4159377 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4159316 TTCGGTCTGA
* *
4159326 TCTTAGATTGGGAATGAACTTCGTAT
1 TCTTAGATGGGGAATGAACTCCGTAT
*
4159352 TCTTAGATGGGGGATGAACTCCGTAT
1 TCTTAGATGGGGAATGAACTCCGTAT
4159378 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (26 bp):
TCTTAGATGGGGAATGAACTCCGTAT
Found at i:4159664 original size:26 final size:26
Alignment explanation
Indices: 4159626--4159678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4159616 CCGATCCGAT
*
4159626 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
4159652 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
4159678 C
1 C
4159679 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:4159851 original size:26 final size:26
Alignment explanation
Indices: 4159822--4159926 Score: 201
Period size: 26 Copynumber: 4.0 Consensus size: 26
4159812 CCGGTCCAAT
*
4159822 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
4159848 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
4159874 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
4159900 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
4159926 C
1 C
4159927 CTAAGTCAAC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:4161004 original size:26 final size:26
Alignment explanation
Indices: 4160964--4161015 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4160954 TGGTCTGATA
*
4160964 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
4160990 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4161016 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:4161876 original size:13 final size:13
Alignment explanation
Indices: 4161858--4161882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4161848 CAATGGCACA
4161858 TGATGGCACATGG
1 TGATGGCACATGG
4161871 TGATGGCACATG
1 TGATGGCACATG
4161883 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:4161962 original size:45 final size:45
Alignment explanation
Indices: 4161913--4162036 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 45
4161903 GGCTGCCCTT
** * ** * *
4161913 TGGTATGGGCACTTGCCTCGATCGGCATCAGCACAACTTGGGTCC
1 TGGTATGGGCGGTTGCCTCGACCACCATCAGCACAACATGGGCCC
* * *
4161958 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
1 TGGTATGGGCGGTTGCCTCGACCACCATCAGCACAACATGGGCCC
* *
4162003 TGGTGTGGGCGGTTGCCTCGACCACCATCGGCAC
1 TGGTATGGGCGGTTGCCTCGACCACCATCAGCAC
4162037 CAGATTGCCC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.20
Consensus pattern (45 bp):
TGGTATGGGCGGTTGCCTCGACCACCATCAGCACAACATGGGCCC
Found at i:4162130 original size:45 final size:45
Alignment explanation
Indices: 4161951--4162129 Score: 198
Period size: 45 Copynumber: 4.0 Consensus size: 45
4161941 CAGCACAACT
* * * *
4161951 TGGGTCCTGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGA
1 TGGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATGA
* *
4161996 TGGGCCCTGGTGTGGGCGGTTGCCTCGACCACCATCGGCACCA-GA
1 TGGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCA-CATGA
* * * * * * *
4162041 TTGCCCCTAGTGCGGGCGATTACATCGAACACCATCGGCACATGC
1 TGGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATGA
* * *
4162086 TGGGCCGTGGTGCGGGCAATTGCCTCGACCACCATCGACACATG
1 TGGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATG
4162130 CCGAGCCTTG
Statistics
Matches: 111, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.02
45 107 0.96
46 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
TGGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATGA
Found at i:4162617 original size:26 final size:26
Alignment explanation
Indices: 4162581--4162633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4162571 CCGGTTCGAT
4162581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4162607 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4162633 C
1 C
4162634 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4162972 original size:26 final size:26
Alignment explanation
Indices: 4162936--4162988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4162926 CCGATCCGAT
*
4162936 CTTAGACTGGAAATGAACTCTTTATG
1 CTTAGACTGGAAATGAACTCTATATG
*
4162962 CTTAGACTGGAGATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCTATATG
4162988 C
1 C
4162989 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTATATG
Found at i:4163349 original size:45 final size:45
Alignment explanation
Indices: 4163300--4163397 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
4163290 CTGCCTTTTG
* *
4163300 GTACGGGCACTTACCTCGACCGCCATCGGTACAAGATGGGCCCTA
1 GTACGGGCACTTACCTCGACCACCATCGGTACAAGATGGCCCCTA
** * *
4163345 GTACGGGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTG
1 GTACGGGCACTTACCTCGACCACCATCGGTACAAGATGGCCCCTA
*
4163390 GTGCGGGC
1 GTACGGGC
4163398 GATTGCATCG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (45 bp):
GTACGGGCACTTACCTCGACCACCATCGGTACAAGATGGCCCCTA
Found at i:4163398 original size:45 final size:45
Alignment explanation
Indices: 4163313--4163467 Score: 195
Period size: 45 Copynumber: 3.4 Consensus size: 45
4163303 CGGGCACTTA
* * *
4163313 CCTCGACCGCCATCGGTACAAGATGGGCCCTAGTACGGGCGGTTG
1 CCTCGACCACCATCGGTACAAGATGGGCCCTGGTGCGGGCGGTTG
* *
4163358 CCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGCGATTG
1 CCTCGACCACCATCGGTACAAGATGGGCCCTGGTGCGGGCGGTTG
* * * * **
4163403 CATCGAACACCATCGGCACATA-CTGGGCTGTGGTGCGGGCGGTTG
1 CCTCGACCACCATCGGTACA-AGATGGGCCCTGGTGCGGGCGGTTG
4163448 CCTCGACCACCATCGGTACA
1 CCTCGACCACCATCGGTACA
4163468 TGTCGAGCCC
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 92 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
CCTCGACCACCATCGGTACAAGATGGGCCCTGGTGCGGGCGGTTG
Found at i:4164221 original size:45 final size:45
Alignment explanation
Indices: 4164065--4164219 Score: 166
Period size: 45 Copynumber: 3.4 Consensus size: 45
4164055 ACGGGACTTA
* * *
4164065 CCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCAGTTA
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTG
* * * **
4164110 CCTCGACCACCATCGACACAAGATGGCCCCTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTG
* * * * * * * *
4164155 CATCAAACACAATCGGTACATGCTGGGCCATGGAGCAGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTG
4164200 CCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
4164220 TGTCGAGTCT
Statistics
Matches: 84, Mismatches: 26, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 84 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTG
Found at i:4164620 original size:751 final size:748
Alignment explanation
Indices: 4163168--4165150 Score: 2830
Period size: 751 Copynumber: 2.6 Consensus size: 748
4163158 CCTAGGTCAA
* * *
4163168 CACATG-CTCGAGCCC-GACATGTGCACCGTCGCTCAAAATTGAACTTCGGCCAAGGCCTCGACC
1 CACATGCCT-GAGCCCAG-CATGTGCATCGTGGCTCAAAA-TCAACTTCGGCCAAGGCCTCGACC
* *
4163231 ATCAATGGCAAATGATGGTGTATGGTGATGGCACATGCATCGACCATCATCGACACAGGCTGCCT
63 ATCAATGGCACATGATGGTGTATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTGCC-
* * * * *
4163296 TTTGGTACGGGCACTTACCTCGACCGCCATCGGTACAAGATGGGCCCTAGTACGGGCGGTTGCCT
127 TTTGGTACGGG-ACTTACCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCT
* * *
4163361 CGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGCGATTGCATCGAACACCATCGGCACATAC
191 CGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGC
** * * *
4163426 TGGGCTGTGGTGCGGGCGGTTGCCTCGACCACCATCGGTACATGTCGAGCCCCAGTCGACCCCCA
256 TGGGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGAG-CTCGGTCGACCCCCA
* * * * *
4163491 AAACGAGCGAGCAGGCATCGAACCGACTGCTGGGGGTGGGTTGTGCGAGCCGACCAAGGATCTTG
320 AAACGAGCGAGCGGGCACCAAACCGACTGTTGGGGGT-GGTTGTGCGAGCCGACCAAGGATCCTG
* * *
4163556 CTGCTGGTCCCCCTTGATTGTTGCCCCAAACGCCATTGATAGCCTCTGGCCCTTGGTTGGTCGAG
384 CTGCTGGTCCCCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAG
*
4163621 ATCGAAAATGCACTACGTATGCCTAAGTCAACCCATGAAATGACTGCGCAGGCGCTCAATCTATC
449 ATCGAAAATGCACTACGTATGCCTAAGTCAACCCATGAAACGACTGCGCAGGCGCTCAATCTATC
* * * *
4163686 GAAGAGCTAGAATGCACAAGTTAAGGATCGACCCGATCCCCTTCTGCGTGCTGCCGATCCCACTG
514 GAAGAGCCAGAATGCACAAGTCAAGGATCGACCCGATCCCCTTCTGCATGCTACCGATCCCACTG
* * * *
4163751 CGGGTCCCTCGATCTGGTTGGGGTGTATAAGGGCCAAGTACCAGAACCTATCGCACATTATGTGC
579 CGGGTCCCTCGATCCGGTCGGGGTGTATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGC
*
4163816 GCATACCCCTCGGCCCCCCAATCACCAGAACCCCCAATGTCGCTGGGTAGGTTCTCCAGTGATGC
644 GCACACCCCTCGGCCCCCCAATCACCAGAACCCCCAATGTCGCTGGGTAGGTTCTCCAGTGATGC
* * *
4163881 TCCGGCGATGGTGCCTCGAGTGAAAAAAATGTGGTACCAG
709 TCCGGCAATGGTGCCCCAAGTGAAAAAAATGTGGTACCAG
* *
4163921 CACATGCCTGAGCCCAGCATATGCATCGTGGCTCAAAATCACACTTCGGCTAAGGCCTCGACCAT
1 CACATGCCTGAGCCCAGCATGTGCATCGTGGCTCAAAATCA-ACTTCGGCCAAGGCCTCGACCAT
*
4163986 CAATGGCACATGATGGTGCATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTGACCTT
65 CAATGGCACATGATGGTGTATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTG-CCTT
* *
4164051 TGGTACGGGACTTACCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCAGTTACCTCGA
129 TGGTACGGGACTTACCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGA
* * * * *
4164116 CCACCATCGACACAAGATGGCCCCTGGTGTGGGCGGTTGCATCAAACACAATCGGTACATGCTGG
194 CCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGG
* * * *
4164181 GCCATGGAGCAGGCGGTTGCCTCGACCACCATCGGCACATGTCGAGTCTTGGTCGACCCCCGAAA
259 GCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGAG-CTCGGTCGACCCCCAAAA
* *
4164246 TGATCGAGCGGGCACCAAACCGACTGTTGGGGGCT-GTTGTGCGAGCCGACCAAGGATCCTGCTG
323 CGAGCGAGCGGGCACCAAACCGACTGTTGGGGG-TGGTTGTGCGAGCCGACCAAGGATCCTGCTG
* *
4164310 TTGGTCCCCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAGACC
387 CTGGTCCCCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAGATC
* * * * *
4164375 GAAAATGCACTACGTATGCCTAAGTCAACCCATGAACCGATTGTGC-GAGCGCTCAGTCTGTCGA
452 GAAAATGCACTACGTATGCCTAAGTCAACCCATGAAACGACTGCGCAG-GCGCTCAATCTATCGA
* ** *
4164439 AGAGCCAGAATGCACAAGTCAAGGATCGACTCGATCCCCTTCTGCATGCTATGGATCCCGCTGCG
516 AGAGCCAGAATGCACAAGTCAAGGATCGACCCGATCCCCTTCTGCATGCTACCGATCCCACTGCG
*
4164504 GGTCCCTCGATCCGGTCGGGGCT-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
581 GGTCCCTCGATCCGGTCGGGG-TGTATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCG
* * * * **
4164568 CACACCCCTCGGCCCCCTAATCGCCAGAACCCCGAATG-CTGCTGGTTAGGTTCTCTGGTGATGC
645 CACACCCCTCGGCCCCCCAATCACCAGAACCCCCAATGTC-GCTGGGTAGGTTCTCCAGTGATGC
*
4164632 TCTGGCAATGGTGCCCCAAGTGAAAAAAATGTGGTACCAG
709 TCCGGCAATGGTGCCCCAAGTGAAAAAAATGTGGTACCAG
* * * *
4164672 CACATGCCCGAGCCCAGCATGTGCATCGTGGCTTAAAATCAAACTTCGACCAAGGTCTCGACCAT
1 CACATGCCTGAGCCCAGCATGTGCATCGTGGCTCAAAATC-AACTTCGGCCAAGGCCTCGACCAT
* *
4164737 CAATGACACATGATGGCGTATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTGCCCTT
65 CAATGGCACATGATGGTGTATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTG-CCTT
* * *
4164802 TGGTAAGGGACTTGCCTCGACCGCTATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGA
129 TGGTACGGGACTTACCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGA
* * * * * *
4164867 CCACCATCGGCACAAAATGGCCTCTGGTGCAGGCTGTTGCATCGAACACCATCGACACATGCTAG
194 CCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGG
* * * **
4164932 GCCATGGTGCGGGTGGTTGCCTCGACCACCATCAGCACATGTCGAGCATCGATCGGA-CCTTAAA
259 GCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGAGC-TCGGTC-GACCCCCAAA
* * **
4164996 ACAAGCGAGCGGGCACCAAATCGACCATTGGGGGTGGCTTGTGCGAGCCGACCAAGGAT-CTCGC
322 ACGAGCGAGCGGGCACCAAACCGACTGTTGGGGGTGG-TTGTGCGAGCCGACCAAGGATCCT-GC
*
4165060 TGCTGGTCCTCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAGA
385 TGCTGGTCCCCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAGA
*
4165125 TCGAAAATGCACTATGTATGCCTAAG
450 TCGAAAATGCACTACGTATGCCTAAG
4165151 CACTACGATG
Statistics
Matches: 1096, Mismatches: 120, Indels: 29
0.88 0.10 0.02
Matches are distributed among these distances:
750 4 0.00
751 662 0.60
752 304 0.28
753 121 0.11
754 5 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (748 bp):
CACATGCCTGAGCCCAGCATGTGCATCGTGGCTCAAAATCAACTTCGGCCAAGGCCTCGACCATC
AATGGCACATGATGGTGTATGGTGATGGCACATGCATCGACCATCATCGGCACAGGCTGCCTTTG
GTACGGGACTTACCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGACC
ACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGC
CATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGAGCTCGGTCGACCCCCAAAACGA
GCGAGCGGGCACCAAACCGACTGTTGGGGGTGGTTGTGCGAGCCGACCAAGGATCCTGCTGCTGG
TCCCCCTCGATTGTTGCCCCAAACACCATCGATAGCCTCTGGCCCTTGGTTGGTCGAGATCGAAA
ATGCACTACGTATGCCTAAGTCAACCCATGAAACGACTGCGCAGGCGCTCAATCTATCGAAGAGC
CAGAATGCACAAGTCAAGGATCGACCCGATCCCCTTCTGCATGCTACCGATCCCACTGCGGGTCC
CTCGATCCGGTCGGGGTGTATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACC
CCTCGGCCCCCCAATCACCAGAACCCCCAATGTCGCTGGGTAGGTTCTCCAGTGATGCTCCGGCA
ATGGTGCCCCAAGTGAAAAAAATGTGGTACCAG
Found at i:4164867 original size:45 final size:44
Alignment explanation
Indices: 4164813--4164970 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 44
4164803 GGTAAGGGAC
* *
4164813 TTGCCTCGACCGCTATCGGCACAAGCTGGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGGCGG
** *
4164858 TTGCCTCGACCACCATCGGCACAAAATGGCCTCTGGTGCAGGCTG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCC-CTGGTGCAGGCGG
* * * * * * *
4164903 TTGCATCGAACACCATCGACACATGCTAGGCCATGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGGCGG
*
4164948 TTGCCTCGACCACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
4164971 TGTCGAGCAT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 4 0.04
45 84 0.91
46 4 0.04
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCAGGCGG
Found at i:4165497 original size:26 final size:26
Alignment explanation
Indices: 4165468--4165520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4165458 TAGGTCCGAT
4165468 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
4165494 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4165520 C
1 C
4165521 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:4165873 original size:26 final size:26
Alignment explanation
Indices: 4165822--4165874 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4165812 CCAGTCTGAT
**
4165822 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4165848 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4165874 C
1 C
4165875 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4166878 original size:45 final size:45
Alignment explanation
Indices: 4166829--4166974 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
4166819 GCCTTGATCG
* *
4166829 CCATCGGCACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGACCA
1 CCATCGGCACAAGATGGGCCCTGGTGCAGGTGGTTGCCTCGACCA
* * * **
4166874 CCATCAGCACAAGATGGCCCCTGGTGCAGGTGGTTGCATCGAATA
1 CCATCGGCACAAGATGGGCCCTGGTGCAGGTGGTTGCCTCGACCA
* * **
4166919 CCATCGGCACATGATGGGCCATGGTGCAGGCAGTTGCCTCGACCA
1 CCATCGGCACAAGATGGGCCCTGGTGCAGGTGGTTGCCTCGACCA
4166964 CCATCGGCACA
1 CCATCGGCACA
4166975 TGTTGAGCCC
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 85 1.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
CCATCGGCACAAGATGGGCCCTGGTGCAGGTGGTTGCCTCGACCA
Found at i:4166976 original size:45 final size:45
Alignment explanation
Indices: 4166805--4166974 Score: 178
Period size: 45 Copynumber: 3.8 Consensus size: 45
4166795 GGCTACCCTT
* * * * * *
4166805 TGGTACAGGCACTTGCCTTGATCGCCATCGGCACAAGCTGGGCCC
1 TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
* ** * *
4166850 TGGTGCGGGTGGTTGCCTCGACCACCATCAGCACAAGATGGCCCC
1 TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
** * ** * *
4166895 TGGTGCAGGTGGTTGCATCGAATACCATCGGCACATGATGGGCCA
1 TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
4166940 TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACA
1 TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACA
4166975 TGTTGAGCCC
Statistics
Matches: 101, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 101 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
TGGTGCAGGCAGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
Found at i:4167811 original size:26 final size:26
Alignment explanation
Indices: 4167775--4167848 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
4167765 TTGATCTTCA
*
4167775 ACTGGGAATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
*
4167801 ACTGGGGATGAACTCTGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
4167827 ACTGGGGATGAACTCCGTATGC
1 ACTGGGGATGAACTCCGTATGC
4167849 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (26 bp):
ACTGGGGATGAACTCCGTATGCTTAG
Found at i:4169755 original size:26 final size:26
Alignment explanation
Indices: 4169719--4169771 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4169709 CTAGTCTGAT
4169719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4169745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4169771 C
1 C
4169772 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4172006 original size:12 final size:12
Alignment explanation
Indices: 4171989--4172030 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
4171979 CCCTCTTGCA
4171989 TGCTGCCGATCC
1 TGCTGCCGATCC
* *
4172001 TGCTGCTGGTCC
1 TGCTGCCGATCC
*
4172013 TGCTGCCAATCC
1 TGCTGCCGATCC
4172025 TGCTGC
1 TGCTGC
4172031 TAGTCCTACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.07, C:0.38, G:0.26, T:0.29
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:4172024 original size:24 final size:24
Alignment explanation
Indices: 4171989--4172037 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
4171979 CCCTCTTGCA
* *
4171989 TGCTGCCGATCCTGCTGCTGGTCC
1 TGCTGCCAATCCTGCTGCTAGTCC
4172013 TGCTGCCAATCCTGCTGCTAGTCC
1 TGCTGCCAATCCTGCTGCTAGTCC
4172037 T
1 T
4172038 ACTACCGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.08, C:0.37, G:0.24, T:0.31
Consensus pattern (24 bp):
TGCTGCCAATCCTGCTGCTAGTCC
Found at i:4172037 original size:12 final size:12
Alignment explanation
Indices: 4171998--4172037 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
4171988 ATGCTGCCGA
*
4171998 TCCTGCTGCTGG
1 TCCTGCTGCTAG
* *
4172010 TCCTGCTGCCAA
1 TCCTGCTGCTAG
4172022 TCCTGCTGCTAG
1 TCCTGCTGCTAG
4172034 TCCT
1 TCCT
4172038 ACTACCGTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.07, C:0.38, G:0.23, T:0.33
Consensus pattern (12 bp):
TCCTGCTGCTAG
Found at i:4172095 original size:26 final size:26
Alignment explanation
Indices: 4172066--4172118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4172056 CCCGTCGGAT
*
4172066 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4172092 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4172118 C
1 C
4172119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4173062 original size:45 final size:45
Alignment explanation
Indices: 4173013--4173181 Score: 160
Period size: 45 Copynumber: 3.8 Consensus size: 45
4173003 GGCTGCCTTT
* * * *
4173013 TGGTATGGGCACTTGCCTTGATCGCCATCGGCACAAGTTGGGCCC
1 TGGTACGGGCAGTTGCCTTGAACACCATCGGCACAAGTTGGGCCC
* * * * * *
4173058 TGGTACGGGCGGTTGCC-TCAACCACCATTGGTACAAGATGGCCCC
1 TGGTACGGGCAGTTGCCTTGAA-CACCATCGGCACAAGTTGGGCCC
* * * * *
4173103 TGGTGCGGGCAGTTGCATTGAACACCATCTGCACATGTTGGGCCG
1 TGGTACGGGCAGTTGCCTTGAACACCATCGGCACAAGTTGGGCCC
* * *
4173148 TGGTGCGGGCAGTTGCCTTGACCACGATCGGCAC
1 TGGTACGGGCAGTTGCCTTGAACACCATCGGCAC
4173182 TTATCGAACC
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 2 0.02
45 92 0.95
46 3 0.03
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.22
Consensus pattern (45 bp):
TGGTACGGGCAGTTGCCTTGAACACCATCGGCACAAGTTGGGCCC
Found at i:4175080 original size:45 final size:45
Alignment explanation
Indices: 4175010--4175190 Score: 202
Period size: 45 Copynumber: 4.0 Consensus size: 45
4175000 ATCGGCAGAA
* * *
4175010 GCTGGGCCATGGTGCGAGCGGTTGCCTCGATCACCA-CTAGCACAT
1 GCTGGCCCATGGTGCGGGCGGTTGCCTCGACCACCATC-AGCACAT
* * * *
4175055 GCTGGCCCTTGGTGCGGGTGATTGCCTCGACCACCATCAGCACAA
1 GCTGGCCCATGGTGCGGGCGGTTGCCTCGACCACCATCAGCACAT
** * * * * *
4175100 AATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGTACAT
1 GCTGGCCCATGGTGCGGGCGGTTGCCTCGACCACCATCAGCACAT
* *
4175145 GCTGGGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAT
1 GCTGGCCCATGGTGCGGGCGGTTGCCTCGACCACCATCAGCACAT
4175190 G
1 G
4175191 TCGAGCCCCG
Statistics
Matches: 111, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
45 110 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.19
Consensus pattern (45 bp):
GCTGGCCCATGGTGCGGGCGGTTGCCTCGACCACCATCAGCACAT
Found at i:4175135 original size:90 final size:90
Alignment explanation
Indices: 4175019--4175188 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 90
4175009 AGCTGGGCCA
* * * *
4175019 TGGTGCGAGCGGTTGCCTCGATCACCA-CTAGCACATGCTGGCCCTTGGTGCGGGTGATTGCCTC
1 TGGTGCGAGCGGTTGCATCGAACACCATC-AGCACATGCTGGCCCATGGTGCGGGCGATTGCCTC
4175083 GACCACCATCAGCACAAAATGGCCCC
65 GACCACCATCAGCACAAAATGGCCCC
* * * * *
4175109 TGGTGCGGGCGGTTGCATCGAACACCATCGGTACATGCTGGGCCATGGTGCGGGCGGTTGCCTCG
1 TGGTGCGAGCGGTTGCATCGAACACCATCAGCACATGCTGGCCCATGGTGCGGGCGATTGCCTCG
*
4175174 ACCACCATCGGCACA
66 ACCACCATCAGCACA
4175189 TGTCGAGCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
90 68 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (90 bp):
TGGTGCGAGCGGTTGCATCGAACACCATCAGCACATGCTGGCCCATGGTGCGGGCGATTGCCTCG
ACCACCATCAGCACAAAATGGCCCC
Found at i:4176886 original size:45 final size:45
Alignment explanation
Indices: 4176837--4177008 Score: 150
Period size: 45 Copynumber: 3.8 Consensus size: 45
4176827 AGCTAGGCTC
* * * * *
4176837 TGGTGTGGGCAGTTGCCTCGATCACCATCGGTACATGTCGGCCCT
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGGCCCA
* * * * * *
4176882 TGGTGCGGGCGATTGCTTCAACCACCATCAGCACAAGAT-GGCCCC
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATG-TCGGCCCA
* * * * * *
4176927 TAGTGTGGGCGGTTGCATCGAACACCATCGGCAGATG-CTGGGCCA
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTC-GGCCCA
*
4176972 TGGTGCGGGCGGCTGCCTCGACCACCATCGGCACATG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATG
4177009 CCGAGCCTCG
Statistics
Matches: 97, Mismatches: 27, Indels: 6
0.75 0.21 0.05
Matches are distributed among these distances:
45 96 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGGCCCA
Found at i:4176953 original size:90 final size:90
Alignment explanation
Indices: 4176839--4177006 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 90
4176829 CTAGGCTCTG
* * * * * *
4176839 GTGTGGGCAGTTGCCTCGATCACCATCGGTACATG-TCGGCCCTTGGTGCGGGCGATTGCTTCAA
1 GTGTGGGCAGTTGCATCGAACACCATCGGCACATGCT-GGCCCATGGTGCGGGCGACTGCCTCAA
4176903 CCACCATCAGCACAAGATGGCCCCTA
65 CCACCATCAGCACAAGATGGCCCCTA
* * * * *
4176929 GTGTGGGCGGTTGCATCGAACACCATCGGCAGATGCTGGGCCATGGTGCGGGCGGCTGCCTCGAC
1 GTGTGGGCAGTTGCATCGAACACCATCGGCACATGCTGGCCCATGGTGCGGGCGACTGCCTCAAC
*
4176994 CACCATCGGCACA
66 CACCATCAGCACA
4177007 TGCCGAGCCT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 64 0.98
91 1 0.02
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (90 bp):
GTGTGGGCAGTTGCATCGAACACCATCGGCACATGCTGGCCCATGGTGCGGGCGACTGCCTCAAC
CACCATCAGCACAAGATGGCCCCTA
Found at i:4177163 original size:26 final size:26
Alignment explanation
Indices: 4177134--4177184 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4177124 CCGGTCTGAT
4177134 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
4177160 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4177185 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:4178174 original size:45 final size:44
Alignment explanation
Indices: 4178125--4178371 Score: 226
Period size: 45 Copynumber: 5.5 Consensus size: 44
4178115 GTGCGGGCAC
* * **
4178125 TTGCCTCGACCACCATTGACACAAGCTGGGCCCTGGTGCGGATGG
1 TTGCCTCGACCACCATCGACACAAGCT-GGCCCTGGTGTGGGCGG
* *
4178170 TTGCCTCGACCACCATC-AGCGCAAGATGGCCCTTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGA-CACAAGCTGGCCC-TGGTGTGGGCGG
* * * * *
4178215 TTGCATCAAACACCATCGACACATGCTGGCCGTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGCCCTGGTGTGGGCGG
* * * * *
4178259 TTGCCTCGACCACCATTGGCACAAGATGGCCCTTCGTGCGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGCCC-TGGTGTGGGCGG
* * * * ** *
4178304 TTGCATCGAACACCATCGGCACATGCTGGGCTGTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGACACAAGCT-GGCCCTGGTGTGGGCGG
*
4178349 TTGCCTCGACCACTATCGACACA
1 TTGCCTCGACCACCATCGACACA
4178372 TGCAGAGCCC
Statistics
Matches: 160, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
44 42 0.26
45 114 0.71
46 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGACACAAGCTGGCCCTGGTGTGGGCGG
Found at i:4178268 original size:89 final size:90
Alignment explanation
Indices: 4178108--4178361 Score: 321
Period size: 89 Copynumber: 2.8 Consensus size: 90
4178098 GGCACAGGCT
* ** * * * * * * * *
4178108 GCCCTTTGTGCGGGCACTTGCCTCGACCACCATTGACACAAGCTGGGCCCTGGTGCGGATGGTTG
1 GCCCTTCGTGCGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCCGTGGTGTGGGTGGTTG
*
4178173 CCTCGACCACCATCAGCGCAAGATG
66 CCTCGACCACCATCAGCACAAGATG
* * *
4178198 GCCCTTGGTGTGGGCGGTTGCATCAAACACCATCGACACATGCT-GGCCGTGGTGTGGGCGGTTG
1 GCCCTTCGTGCGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCCGTGGTGTGGGTGGTTG
**
4178262 CCTCGACCACCATTGGCACAAGATG
66 CCTCGACCACCATCAGCACAAGATG
* * *
4178287 GCCCTTCGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCTGTGGTGTGGGTGGTTG
1 GCCCTTCGTGCGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCCGTGGTGTGGGTGGTTG
4178352 CCTCGACCAC
66 CCTCGACCAC
4178362 TATCGACACA
Statistics
Matches: 141, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
89 78 0.55
90 63 0.45
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.21
Consensus pattern (90 bp):
GCCCTTCGTGCGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCCGTGGTGTGGGTGGTTG
CCTCGACCACCATCAGCACAAGATG
Found at i:4178282 original size:134 final size:134
Alignment explanation
Indices: 4178125--4178374 Score: 315
Period size: 134 Copynumber: 1.9 Consensus size: 134
4178115 GTGCGGGCAC
* * * * *
4178125 TTGCCTCGACCACCATTGACACAAGCTGGGCCC-TGGTGCGGATGGTTGCCTCGACCACCATCAG
1 TTGCCTCGACCACCATTGACACAAGAT-GGCCCTTCGTGCGGACGGTTGCATCGAACACCATCAG
*
4178189 CGCAAGATGGCCCT-TGGTGTGGGCGGTTGCATCAAACACCATCGACACATGCTGGCCGTGGTGT
65 CACAAGATGG-CCTGTGGTGTGGGCGGTTGCATCAAACACCATCGACACATGCTGGCCGTGGTGT
4178253 GGGCGG
129 GGGCGG
* * *
4178259 TTGCCTCGACCACCATTGGCACAAGATGGCCCTTCGTGCGGGCGGTTGCATCGAACACCATCGGC
1 TTGCCTCGACCACCATTGACACAAGATGGCCCTTCGTGCGGACGGTTGCATCGAACACCATCAGC
* * * * * * * *
4178324 ACATGCTGGGCTGTGGTGTGGGTGGTTGCCTCGACCACTATCGACACATGC
66 ACAAGATGGCCTGTGGTGTGGGCGGTTGCATCAAACACCATCGACACATGC
4178375 AGAGCCCCGG
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
133 7 0.07
134 90 0.93
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (134 bp):
TTGCCTCGACCACCATTGACACAAGATGGCCCTTCGTGCGGACGGTTGCATCGAACACCATCAGC
ACAAGATGGCCTGTGGTGTGGGCGGTTGCATCAAACACCATCGACACATGCTGGCCGTGGTGTGG
GCGG
Found at i:4179470 original size:196 final size:196
Alignment explanation
Indices: 4179131--4179484 Score: 428
Period size: 196 Copynumber: 1.8 Consensus size: 196
4179121 TCCCGTTGGG
* * * *
4179131 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGTCCGGGGGCTCAT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGGGCTCAG
* * * * * *
4179196 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCC
66 CCAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCTTACGTGCTATCGATCC
* * * *
4179261 TGCTGCTGGTCCTGCAACCGCAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTA
131 CGCTACGGGTCCTGCAACCACAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTA
4179326 C
196 C
* * *
4179327 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGGGCTCA
* * * * * *
4179391 GCCAACCAGAGAGGTAGGATGCGTAAGTC-GAGGATTGACCTAG-T-CCCCTCTGCGTGCTATCG
65 GCCAACCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACC-AGATCCCCCT-TACGTGCTATCG
*
4179453 ATCCCGCTACGGGTCCTGCTACCACAACCCTC
127 ATCCCGCTACGGGTCCTGCAACCACAACCCTC
4179485 GGTCCAGTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
195 7 0.05
196 122 0.94
197 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGGGCTCAG
CCAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCTTACGTGCTATCGATCC
CGCTACGGGTCCTGCAACCACAACCCTCCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTA
C
Found at i:4180348 original size:45 final size:45
Alignment explanation
Indices: 4180296--4180453 Score: 190
Period size: 45 Copynumber: 3.5 Consensus size: 45
4180286 GTACGGGCAC
* * *
4180296 TTGCCTCGACCACCGTCGGCATAAGATGGGCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCATGGTGCGGGCGG
** * *
4180341 TTGCCTCGACCACCATCAACACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCATGGTGCGGGCGG
* * * * * *
4180386 TTGCATCGAACACCATTGGCACATGCTGGGCCATGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCATGGTGCGGGCGG
*
4180431 TTGCCTCAACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
4180454 TACAGAGCCC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCATGGTGCGGGCGG
Found at i:4181070 original size:26 final size:26
Alignment explanation
Indices: 4181034--4181086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4181024 CTAGTTCGAT
4181034 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
4181060 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
4181086 C
1 C
4181087 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:4181418 original size:26 final size:26
Alignment explanation
Indices: 4181389--4181441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4181379 CCGATCCAAT
*
4181389 CTTAGACTG-GGAATGCACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
4181415 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
4181441 C
1 C
4181442 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:4182523 original size:90 final size:89
Alignment explanation
Indices: 4182402--4182574 Score: 195
Period size: 90 Copynumber: 1.9 Consensus size: 89
4182392 AAACAAGCTG
* * * * * * *
4182402 GGCCCTGGTGTGGGCGGTCACCTCGATCACCATTGGCACAT-ATCGACCCTTGGTGCGGGTGATT
1 GGCCCTGGTGTAGGCGGTCACATCGAACACCATCGGCACATGCT-GACCCATGGTGCGGGCGATT
*
4182466 GGCTCGACCACCATCGGCAAAAGAT
65 GCCTCGACCACCATCGGCAAAAGAT
** * **
4182491 GGCCCTTGGTGTAGGCGGTTGCATCGAACACCATCGGGACATGCTGGGCCATGGTGCGGGCGATT
1 GGCCC-TGGTGTAGGCGGTCACATCGAACACCATCGGCACATGCTGACCCATGGTGCGGGCGATT
*
4182556 GCCTCGACTACCATCGGCA
65 GCCTCGACCACCATCGGCA
4182575 CATGTTGAGC
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
89 5 0.07
90 62 0.91
91 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (89 bp):
GGCCCTGGTGTAGGCGGTCACATCGAACACCATCGGCACATGCTGACCCATGGTGCGGGCGATTG
CCTCGACCACCATCGGCAAAAGAT
Found at i:4182578 original size:45 final size:44
Alignment explanation
Indices: 4182422--4182578 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 44
4182412 TGGGCGGTCA
* * * *
4182422 CCTCGATCACCATTGGCACAT-ATCGACCCTTGGTGCGGGTGATTG
1 CCTCGA-CACCATCGGCACATGAT-GGCCCATGGTGCGGGCGATTG
* * * * ** *
4182467 GCTCGACCACCATCGGCAAAAGATGGCCCTTGGTGTAGGCGGTTG
1 CCTCGA-CACCATCGGCACATGATGGCCCATGGTGCGGGCGATTG
* * * *
4182512 CATCGAACACCATCGGGACATGCTGGGCCATGGTGCGGGCGATTG
1 CCTCG-ACACCATCGGCACATGATGGCCCATGGTGCGGGCGATTG
4182557 CCTCGACTACCATCGGCACATG
1 CCTCGAC-ACCATCGGCACATG
4182579 TTGAGCCCCA
Statistics
Matches: 86, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
44 2 0.02
45 81 0.94
46 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (44 bp):
CCTCGACACCATCGGCACATGATGGCCCATGGTGCGGGCGATTG
Found at i:4183333 original size:26 final size:26
Alignment explanation
Indices: 4183304--4183356 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4183294 TCAGTCTGAT
* * *
4183304 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACGAGGAACGAACTCCGTATG
*
4183330 CTTAGACGGGGAACGAACTCCGTATG
1 CTTAGACGAGGAACGAACTCCGTATG
4183356 C
1 C
4183357 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGAGGAACGAACTCCGTATG
Found at i:4183689 original size:26 final size:26
Alignment explanation
Indices: 4183660--4183715 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
4183650 CCTGTCCGAT
*
4183660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4183686 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4183712 CTTA
1 CTTA
4183716 AGTCAACGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4184799 original size:44 final size:45
Alignment explanation
Indices: 4184640--4184796 Score: 156
Period size: 45 Copynumber: 3.5 Consensus size: 45
4184630 GTACGGGCAC
* * * * *
4184640 TTGCCTCGACCACCATCGGCACAAGTTGGGCCTTGGTACGAGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCATGGTGCGGGCGG
* * * * *
4184685 TTGCCTCGACCACCATCTACACAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCATGGTGCGGGCGG
* * *
4184730 TTGCTTCGAACC-CCATCGGCACATGCTGGGCCATGG-GCGGGCGG
1 TTGCCTCG-ACCACCATCGACACAAGCTGGGCCATGGTGCGGGCGG
* *
4184774 TTCCCTCGACCACTATCGACACA
1 TTGCCTCGACCACCATCGACACA
4184797 TGCCGAGCCT
Statistics
Matches: 90, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
43 3 0.03
44 22 0.24
45 62 0.69
46 3 0.03
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCTGGGCCATGGTGCGGGCGG
Found at i:4186112 original size:26 final size:26
Alignment explanation
Indices: 4186083--4186135 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4186073 CTGATCCGAT
4186083 CTTATACT-GGGAATGAACTCCGTATG
1 CTTATACTAGGG-ATGAACTCCGTATG
4186109 CTTATACTAGGGATGAACTCCGTATG
1 CTTATACTAGGGATGAACTCCGTATG
4186135 C
1 C
4186136 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTATACTAGGGATGAACTCCGTATG
Found at i:4190357 original size:226 final size:226
Alignment explanation
Indices: 4189958--4190404 Score: 804
Period size: 226 Copynumber: 2.0 Consensus size: 226
4189948 TTCGTGAGTC
4189958 TGAAAGGCATCACCAAAAACTCATACGAACCATACCTAGTCACACATGCTATTTTTGGCTCATCT
1 TGAAAGGCATCACCAAAAACTCATACGAACCATACCTAGTCACACATGCTATTTTTGGCTCATCT
* *
4190023 CCTTCCGTGATCCTGACTTGATAGTAGCCTGACCTCAAATCCAGCTTGGTGAACCACCTTGCACT
66 CCCTCCGCGATCCTGACTTGATAGTAGCCTGACCTCAAATCCAGCTTGGTGAACCACCTTGCACT
* *
4190088 CCCATGTTGATCGAACAAGTTCGCAATGAGTGGGATAGGGTACTTGTTCTTGATGGTCAGCTTGT
131 CCCAAGTTGATCGAACAAGTTCACAATGAGTGGGATAGGGTACTTGTTCTTGATGGTCAGCTTGT
4190153 TCAAAGCCCGATAGTCTATGCATAGCCATAA
196 TCAAAGCCCGATAGTCTATGCATAGCCATAA
* * *
4190184 TGAAAGGCATCACCAAGAACTTATACGAACCATACCTAGTGACACATGCTATTTTTGGCTCATCT
1 TGAAAGGCATCACCAAAAACTCATACGAACCATACCTAGTCACACATGCTATTTTTGGCTCATCT
4190249 CCCTCCGCGATCCTGACTTGATAGTAGCCTGACCTCAAATCCAGCTTGGTGAACCACCTTGCACT
66 CCCTCCGCGATCCTGACTTGATAGTAGCCTGACCTCAAATCCAGCTTGGTGAACCACCTTGCACT
*
4190314 CCCAAGTTGATCGAACAAGTTCACAATGAGTGGGATGGGGTACTTGTTCTTGATGGTCAGCTTGT
131 CCCAAGTTGATCGAACAAGTTCACAATGAGTGGGATAGGGTACTTGTTCTTGATGGTCAGCTTGT
* *
4190379 TCAAAGCTCGGTAGTCTATGCATAGC
196 TCAAAGCCCGATAGTCTATGCATAGC
4190405 TGCAACGACC
Statistics
Matches: 211, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
226 211 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (226 bp):
TGAAAGGCATCACCAAAAACTCATACGAACCATACCTAGTCACACATGCTATTTTTGGCTCATCT
CCCTCCGCGATCCTGACTTGATAGTAGCCTGACCTCAAATCCAGCTTGGTGAACCACCTTGCACT
CCCAAGTTGATCGAACAAGTTCACAATGAGTGGGATAGGGTACTTGTTCTTGATGGTCAGCTTGT
TCAAAGCCCGATAGTCTATGCATAGCCATAA
Done.