Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 38 of 120
Found at i:4193185 original size:45 final size:45
Alignment explanation
Indices: 4193119--4193276 Score: 133
Period size: 45 Copynumber: 3.5 Consensus size: 45
4193109 ACACAGGCAC
* * * *
4193119 TTGCCTCAACCGCCATTGGCACAAGCTGGGCCCTAGTGCGAGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGCGA
* * *
4193164 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCTG-GCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGC-GAGCGA
* * * ** *
4193209 TTGCATCGAACACCATTC-GCACATGCTGGGCTGTGGTGTGAGC-A
1 TTGCCTCGACCACCA-TCGGCACAAGCTGGGCCCTGGTGCGAGCGA
* *
4193253 GTTGCCTCGACCATCATCGACACA
1 -TTGCCTCGACCACCATCGGCACA
4193277 TGCCGAGCCC
Statistics
Matches: 88, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
44 3 0.03
45 82 0.93
46 3 0.03
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGCGA
Found at i:4193599 original size:26 final size:26
Alignment explanation
Indices: 4193562--4193612 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4193552 CCAGTCCGAT
4193562 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
* *
4193588 CTTAGACTGGGAGTGAACTCTGTAT
1 CTTAGACAGGGAATGAACTCTGTAT
4193613 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:4193946 original size:26 final size:26
Alignment explanation
Indices: 4193917--4193969 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4193907 CTGATTCGAT
4193917 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGTGG-ATGAACTCTGTATG
4193943 CTTAGACTGTGGATGAACTCTGTATG
1 CTTAGACTGTGGATGAACTCTGTATG
4193969 C
1 C
4193970 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTCTGTATG
Found at i:4194095 original size:196 final size:195
Alignment explanation
Indices: 4193746--4194124 Score: 426
Period size: 196 Copynumber: 1.9 Consensus size: 195
4193736 TCTGGCTGGG
* * *
4193746 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAGCCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCACTCAG
* * *
4193811 CCGACCGGAGAGCTAGAATACGCAAGCTGGGGATCAGCCCGGTGCCCCCTACGTGCTGTCGATCC
66 CCGACCAGAGAGCTAGAATACACAAGCTGGGGATCAGCCAGGTGCCCCCTACGTGCTGTCGATCC
* * *
4193876 TGCTGCTAGTCCTGCTATCACAACCCTCGGTCTGAT-TCGATCTTAGACTGGGAATGAACTCTGT
131 CGCTGC-AGTCCTACTATCACAACCCTCGGTCTAATCT-GATCTTAGACTGGGAATGAACTCTGT
4193940 AT
194 AT
* * * * **
4193942 GCTTAGAC-TGTGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGAGTGTGGGCACTCA
1 GCTTAGACATG-GAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCACTCA
* * * * * * *
4194006 GCTGGCCAGAGAGGTAGGATGCACAAG-TCGGGGATC-GACCAGGTTCCCTCTACGTGCTGTCGA
65 GCCGACCAGAGAGCTAGAATACACAAGCT-GGGGATCAG-CCAGGTGCCCCCTACGTGCTGTCGA
* * * *
4194069 TCCCGTCATG-GGTCCTACTGTCACAACCCTTGGTCTAATCTGATCTTAGATTGGGA
128 TCCCG-C-TGCAGTCCTACTATCACAACCCTCGGTCTAATCTGATCTTAGACTGGGA
4194125 GCGCACTACG
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
195 4 0.03
196 143 0.95
197 2 0.01
198 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCACTCAG
CCGACCAGAGAGCTAGAATACACAAGCTGGGGATCAGCCAGGTGCCCCCTACGTGCTGTCGATCC
CGCTGCAGTCCTACTATCACAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:4200876 original size:45 final size:45
Alignment explanation
Indices: 4200796--4200908 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
4200786 GTATGGGCAC
* * * *
4200796 TTGCCTCGACCACTATCGGCATAAGCTGGGACCTGGTACAGGCGA
1 TTGCCTCGACCACCATCGGCACAAGATGGCACCTGGTACAGGCGA
* * * *
4200841 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCACCTGGTACAGGCGA
* * *
4200886 TTGCCTCAACCATCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
4200909 TACCGAGCCC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCACCTGGTACAGGCGA
Found at i:4201888 original size:196 final size:196
Alignment explanation
Indices: 4201535--4201905 Score: 435
Period size: 196 Copynumber: 1.9 Consensus size: 196
4201525 TCCGGCTGGG
**
4201535 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAACGAGCGTACAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACAAAACGAGCGTACAGGCACTCAA
* * ** * *
4201600 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTTCCCCCTGTGTGCTACCAATCT
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGAATCCCCCTGCGTGCTACCAATCC
* * * * ** *
4201665 TGCTGCTGGCCCTGCTGTCACAACCCTCGGTCTGATCTGATCTTATACTAGGAATGAACTCCGTA
131 TGCTACGGGCCCTACTGTCAAAACCCTCAATCTGATCCGATCTTATACTAGGAATGAACTCCGTA
4201730 T
196 T
* ** *
4201731 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAG-TCAACCCACAAAACGAGCGTACGGGCACTC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCACAAAACGAGCGTACAGGCACTC
* * * * ** *
4201794 AGCCGGCCAGAGAGGCAGGATGCGTAAGCTGGGGATTGACCC-AATCCCCTCTGCGTGCTGTCGA
64 AACCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGAATCCCC-CTGCGTGCTACCAA
*
4201858 TCCTGCTACGGGTCCTACT-TCCAAAACCCTCAATCTGATCCGATCTTA
128 TCCTGCTACGGGCCCTACTGT-CAAAACCCTCAATCTGATCCGATCTTA
4201906 GACTGGGAGC
Statistics
Matches: 144, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
195 8 0.06
196 136 0.94
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACAAAACGAGCGTACAGGCACTCAA
CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGAATCCCCCTGCGTGCTACCAATCC
TGCTACGGGCCCTACTGTCAAAACCCTCAATCTGATCCGATCTTATACTAGGAATGAACTCCGTA
T
Found at i:4202805 original size:45 final size:45
Alignment explanation
Indices: 4202751--4202862 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 45
4202741 AACGGTTACG
* * *
4202751 TCGATCACCATCGGCACATGCCAGCCCTTGGTGCGAGCAATTGCC
1 TCGACCACCATCGGCACATGCCAGCCCGTGGTACGAGCAATTGCC
* ** * ***
4202796 TCGACCACCATCGCCACATGCTGGCCCGTGGTACGGGTGGTTGCC
1 TCGACCACCATCGGCACATGCCAGCCCGTGGTACGAGCAATTGCC
*
4202841 TCGACCACCATCGGCATATGCC
1 TCGACCACCATCGGCACATGCC
4202863 GAGCACCGAA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.18, C:0.37, G:0.26, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGCCAGCCCGTGGTACGAGCAATTGCC
Found at i:4203306 original size:26 final size:26
Alignment explanation
Indices: 4203270--4203322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4203260 TCGGTCCGAT
4203270 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* * *
4203296 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
4203322 C
1 C
4203323 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4203654 original size:26 final size:26
Alignment explanation
Indices: 4203625--4203677 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4203615 CTGGTCTGAT
*
4203625 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
4203651 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
4203677 C
1 C
4203678 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:4203809 original size:196 final size:196
Alignment explanation
Indices: 4203473--4203832 Score: 485
Period size: 196 Copynumber: 1.8 Consensus size: 196
4203463 TGGAACAAAT
** *
4203473 TCCGTATGCCTAAGATAACCCATGAAACGAGCGCGCGGGCGTTCAGCCTACCAGAAAGGCAGAAT
1 TCCGTATGCCTAAGATAACCCACAAAACGAGCGCGCGGGCGCTCAGCCTACCAGAAAGGCAGAAT
* * * * **
4203538 GCGCAAGCCGGGGACCAGCCTAGTCCCTCCTACATGCTGTCGATCCTGCTGTTGGTCCTGCTACC
66 GCGCAAGCCGGGGACCACCCGAGTCCCTCCTACATGCAGTCGATCCCGCTGCGGGTCCTGCTACC
*
4203603 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGGATGAA
131 GCAACCCTCGATCTGATCTGATCTTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGGATGAA
4203668 C
196 C
* * * * * *
4203669 TCCGTATGCCTAAG-TCAACCCACAAAATGAGCGTGTGGGCGCTCAGTCGT-CCAGAGAGGCAGG
1 TCCGTATGCCTAAGAT-AACCCACAAAACGAGCGCGCGGGCGCTCAG-CCTACCAGAAAGGCAGA
* * *
4203732 ATGCGCAAGCCGGGGATCGACCCGA-TCCC-CTCTGCATGCAGTCGATCCCGCTGCGGGTCTTGC
64 ATGCGCAAGCCGGGGA-CCACCCGAGTCCCTC-CTACATGCAGTCGATCCCGCTGCGGGTCCTGC
4203795 TACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGA
127 TACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGA
4203833 GCACACTACG
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
195 2 0.01
196 132 0.94
197 7 0.05
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (196 bp):
TCCGTATGCCTAAGATAACCCACAAAACGAGCGCGCGGGCGCTCAGCCTACCAGAAAGGCAGAAT
GCGCAAGCCGGGGACCACCCGAGTCCCTCCTACATGCAGTCGATCCCGCTGCGGGTCCTGCTACC
GCAACCCTCGATCTGATCTGATCTTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGGATGAA
C
Found at i:4204660 original size:45 final size:45
Alignment explanation
Indices: 4204578--4204820 Score: 181
Period size: 45 Copynumber: 5.4 Consensus size: 45
4204568 GGCAAATGCA
* * * *
4204578 TCGACCATCATCGGCACAGGCT--GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCC--TGGTGCGGGCAGTTGCC
* * *
4204623 TTGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCC
* * * * * *
4204668 TTC-ATCACCATCGGCACATGC-CGGCCCTTGGTG-TGACCGATTGCC
1 -TCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCAG-TTGCC
* * * *
4204713 TCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTGCA
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCC
* * * * *
4204758 TCGAACACCATCGGTACATGCTGGACCGTGGTGCGGGCAGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCC
* **
4204803 TCAACCATTATCGGCACA
1 TCGACCACCATCGGCACA
4204821 TACCGAGCTC
Statistics
Matches: 152, Mismatches: 38, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
44 10 0.07
45 130 0.86
46 8 0.05
47 4 0.03
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCC
Found at i:4204790 original size:90 final size:90
Alignment explanation
Indices: 4204618--4204790 Score: 222
Period size: 90 Copynumber: 1.9 Consensus size: 90
4204608 GTACGGGCAC
* * * * * * *
4204618 TTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTTCATCACCATCGGC
1 TTGCCTCGACCACCATCAGCACAAGATGGCCCCTGGTACGGGCAGTTGCCATCAACACCATCGGC
* *
4204683 ACATGCCGGCCCTTGGTGTGACCGA
66 ACATGCCGGACCGTGGTGTGACCGA
*
4204708 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTG-CATCGAACACCATCGG
1 TTGCCTCGACCACCATCAGCACAAGATGGCCCCTGGTACGGGCAGTTGCCATC-AACACCATCGG
* *
4204772 TACATGCTGGACCGTGGTG
65 CACATGCCGGACCGTGGTG
4204791 CGGGCAGTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
89 3 0.04
90 67 0.96
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCAGCACAAGATGGCCCCTGGTACGGGCAGTTGCCATCAACACCATCGGC
ACATGCCGGACCGTGGTGTGACCGA
Found at i:4204802 original size:90 final size:90
Alignment explanation
Indices: 4204606--4204820 Score: 218
Period size: 90 Copynumber: 2.4 Consensus size: 90
4204596 GGCTGCCCTT
* * * * * * * * *
4204606 TGGTACGGGCACTTGCCTTGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTTC
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTGCCATC
* * *
4204671 ATCACCATCGGCACATGCCGGCCCT
66 AACACCATCGGCACATGCCGGACCG
* * *
4204696 TGGTG-TGACCGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTG-CAT
1 TGGTGCGGGCAG-TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTGCCAT
* *
4204759 CGAACACCATCGGTACATGCTGGACCG
65 C-AACACCATCGGCACATGCCGGACCG
* **
4204786 TGGTGCGGGCAGTTGCCTCAACCATTATCGGCACA
1 TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACA
4204821 TACCGAGCTC
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
89 5 0.05
90 91 0.92
91 3 0.03
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.20
Consensus pattern (90 bp):
TGGTGCGGGCAGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCAGTTGCCATC
AACACCATCGGCACATGCCGGACCG
Found at i:4204816 original size:135 final size:135
Alignment explanation
Indices: 4204578--4204821 Score: 303
Period size: 135 Copynumber: 1.8 Consensus size: 135
4204568 GGCAAATGCA
* * * * * * *
4204578 TCGACCATCATCGGCACAGGCTGCCCTTTGGTACGGGCACTTGCCTTGACCACCATCAGCACAAG
1 TCGACCACCATCGGCACAAGATGCCCTCTGGTACGGGCACTTGCATCGAACACCATCAGCACAAG
* * *
4204643 CTGGGCCCTGGTGCGGGCGGTTGCCTTCATCACCATCGGCACATGCCGGCCCTTGGTGTGACCGA
66 CTGGACCCTGGTGCGGGCAGTTGCCTTCACCACCATCGGCACATGCCGGCCCTTGGTGTGACCGA
4204708 TTGCC
131 TTGCC
* * * *
4204713 TCGACCACCATCGGCACAAGATGGCCC-CTGGTACGGGCAGTTGCATCGAACACCATCGGTACAT
1 TCGACCACCATCGGCACAAGAT-GCCCTCTGGTACGGGCACTTGCATCGAACACCATCAGCACAA
* **
4204777 GCTGGACCGTGGTGCGGGCAGTTGCC-TCAACCATTATCGGCACAT
65 GCTGGACCCTGGTGCGGGCAGTTGCCTTC-ACCACCATCGGCACAT
4204822 ACCGAGCTCG
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
134 2 0.02
135 84 0.93
136 4 0.04
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.20
Consensus pattern (135 bp):
TCGACCACCATCGGCACAAGATGCCCTCTGGTACGGGCACTTGCATCGAACACCATCAGCACAAG
CTGGACCCTGGTGCGGGCAGTTGCCTTCACCACCATCGGCACATGCCGGCCCTTGGTGTGACCGA
TTGCC
Found at i:4205419 original size:26 final size:26
Alignment explanation
Indices: 4205383--4205461 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
4205373 TCGGTCTGAT
** *
4205383 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGGGTGAACTCCGTATG
4205409 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGGGTGAACTCCGTATG
4205435 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGGGTGAACTCCGTATG
4205461 C
1 C
4205462 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGGTGAACTCCGTATG
Found at i:4206441 original size:45 final size:45
Alignment explanation
Indices: 4206392--4206549 Score: 165
Period size: 45 Copynumber: 3.5 Consensus size: 45
4206382 GTATGGGCAC
* *
4206392 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTAGTACGGGCGG
1 TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTAGTACGGGCGG
* * * * *
4206437 TTGCCTCGACCACCATC-GACATAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCAG-CACAAGCTGGGCCCTAGTACGGGCGG
* * ** * * * *
4206482 TTGCATCGAGCACCATCAGCGTATGCTGGGTCGTAATACGGGCGG
1 TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTAGTACGGGCGG
4206527 TTGCCTCGACCACCATCAGCACA
1 TTGCCTCGACCACCATCAGCACA
4206550 TACTGAGCCC
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 1 0.01
45 88 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTAGTACGGGCGG
Found at i:4207093 original size:159 final size:158
Alignment explanation
Indices: 4206851--4207136 Score: 353
Period size: 159 Copynumber: 1.8 Consensus size: 158
4206841 TCGATTTGGT
*
4206851 TGGGGCTTACACTGAGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
1 TGGGGCTTACACTGAGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC
* * * * ** *
4206916 TTAGTCGGTCAGAGAGGTAGGATGCGTAAGTTAAGGATCGGCCCGGTCCCCCTCTACGTGCTGCC
66 TCAGTCGGCCAGAAAGGTAGAATGCACAAGTCAAGGATCGGCCCGGTCCCCC-CTACGTGCTGCC
4206981 GGTCTCGCTGCCACAACCCTCGGTCGGGC
130 GGTCTCGCTGCCACAACCCTCGGTCGGGC
* * * * * *
4207010 TGGGGCTTAGACATG-GAATGAACTCTGTATGCCTAAG-CTAACCCATGAAATGAGTGTGTGGGC
1 TGGGGCTTACAC-TGAGAACGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGC
** * *
4207073 ACTCAGTCGGCC-GAAAAGGTAGAATGCACAAGTCGGGGATTGGCCCGGTCCCCCCTAGGTGCTG
64 ACTCAGTCGGCCAG-AAAGGTAGAATGCACAAGTCAAGGATCGGCCCGGTCCCCCCTACGTGCTG
4207137 TCGATCCTAC
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 11 0.10
159 93 0.88
160 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (158 bp):
TGGGGCTTACACTGAGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC
TCAGTCGGCCAGAAAGGTAGAATGCACAAGTCAAGGATCGGCCCGGTCCCCCCTACGTGCTGCCG
GTCTCGCTGCCACAACCCTCGGTCGGGC
Found at i:4207221 original size:26 final size:27
Alignment explanation
Indices: 4207185--4207242 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
4207175 TTGGTCTGAT
*
4207185 CTTAGACTGGGAATGAACTTCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
**
4207211 CTTAGACTGGGGGTGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
4207238 CTTAG
1 CTTAG
4207243 TCAACCCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:4208892 original size:90 final size:90
Alignment explanation
Indices: 4208798--4208988 Score: 240
Period size: 90 Copynumber: 2.1 Consensus size: 90
4208788 ACCCCGACTG
* * * * * * *
4208798 CCATCGACACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTTGATCACAATTGGCACATG-TCGACC
1 CCATCGGCACAAGATGGCCCTTGGTGCAGGCGGTTGCATCGAACACAATCGGCACATGCT-GACC
* *
4208862 CTTGGTGCGGGCGATTGCCTCGACCA
65 CGTGGTGCGAGCGATTGCCTCGACCA
* * **
4208888 CCATCGGCACGAGATGGCCCTTGGTGCAGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCC
1 CCATCGGCACAAGATGGCCCTTGGTGCAGGCGGTTGCATCGAACACAATCGGCACATGCTGACCC
*
4208953 GTGGTGCGAGCGGTTGCCTCGACCA
66 GTGGTGCGAGCGATTGCCTCGACCA
4208978 CCATCGGCACA
1 CCATCGGCACA
4208989 TGCCGAGCCC
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 84 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (90 bp):
CCATCGGCACAAGATGGCCCTTGGTGCAGGCGGTTGCATCGAACACAATCGGCACATGCTGACCC
GTGGTGCGAGCGATTGCCTCGACCA
Found at i:4208991 original size:45 final size:45
Alignment explanation
Indices: 4208798--4208991 Score: 205
Period size: 45 Copynumber: 4.3 Consensus size: 45
4208788 ACCCCGACTG
* * * * *
4208798 CCATCGACACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTTGATCA
1 CCATCGGCACATGCTGGCCCTTGGTGCAGGCGGTTGCCTCGACCA
* * * * *
4208843 CAATTGGCACATG-TCGACCCTTGGTGCGGGCGATTGCCTCGACCA
1 CCATCGGCACATGCT-GGCCCTTGGTGCAGGCGGTTGCCTCGACCA
* * *
4208888 CCATCGGCACGA-GATGGCCCTTGGTGCAGGCGGTTGCATCGAACA
1 CCATCGGCAC-ATGCTGGCCCTTGGTGCAGGCGGTTGCCTCGACCA
* *
4208933 CCATCGGCACATGCTGGGCCGTGGTGC-GAGCGGTTGCCTCGACCA
1 CCATCGGCACATGCTGGCCCTTGGTGCAG-GCGGTTGCCTCGACCA
4208978 CCATCGGCACATGC
1 CCATCGGCACATGC
4208992 CGAGCCCCAG
Statistics
Matches: 122, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
44 3 0.02
45 117 0.96
46 2 0.02
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
CCATCGGCACATGCTGGCCCTTGGTGCAGGCGGTTGCCTCGACCA
Found at i:4209745 original size:112 final size:113
Alignment explanation
Indices: 4209547--4209751 Score: 279
Period size: 112 Copynumber: 1.8 Consensus size: 113
4209537 AATGTGCAAG
* * * * * **
4209547 CTGGGGATCGGCCCGGTTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTCGCAACC
1 CTGGGGATCGACCCGATTCCCCCCTGCGTACTGTCGATCCCGCTACTGGTCCTACTACCGCAACC
*
4209612 CTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTTGTATGCATAGA
66 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCATAGA
* *
4209660 CTGGGGATCGACCCGATT-CCCTCTGCGTACTGTCGATCCCGCTTC-GGATCCTACTACCGCAAC
1 CTGGGGATCGACCCGATTCCCCCCTGCGTACTGTCGATCCCGCTACTGG-TCCTACTACCGCAAC
* *
4209723 CCTTGGTCCGGTCTGATCTTAGACTGGGA
65 CCTCGGTCCGGTCCGATCTTAGACTGGGA
4209752 GCACACTACG
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
111 2 0.03
112 61 0.77
113 16 0.20
ACGTcount: A:0.15, C:0.32, G:0.27, T:0.27
Consensus pattern (113 bp):
CTGGGGATCGACCCGATTCCCCCCTGCGTACTGTCGATCCCGCTACTGGTCCTACTACCGCAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCATAGA
Found at i:4210576 original size:45 final size:44
Alignment explanation
Indices: 4210527--4210728 Score: 181
Period size: 45 Copynumber: 4.5 Consensus size: 44
4210517 GTACGGGCAC
*
4210527 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCCGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCCGGTGCAGGCGG
* * * ** *
4210572 TTGCCTCGATCACCATTGGCACATGCTGGCCTTTGGTGC-GAGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGCC-CCGGTGCAG-GCGG
* * *
4210617 TTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCAGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCC-GGTGCAGGCGG
* * * * * * **
4210662 TTGCATTGAACACCATCAGCACATGCTGGGTCGTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCCGGTGCAGGCGG
*
4210707 TTGCCTCGACCACCATCAGCAC
1 TTGCCTCGACCACCATCGGCAC
4210729 TTGTCGAGCC
Statistics
Matches: 122, Mismatches: 30, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
44 5 0.04
45 113 0.93
46 4 0.03
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.19
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCCGGTGCAGGCGG
Found at i:4210676 original size:90 final size:90
Alignment explanation
Indices: 4210496--4210723 Score: 241
Period size: 90 Copynumber: 2.5 Consensus size: 90
4210486 ATCGACCATT
* * * * * *
4210496 ATTGGCACAGGCT-GCCTTTTGGTACGGGC-ACTTGCCTCGACCGCCATCGGCACAAGCTGGGCC
1 ATTGGCACATGCTGGCC-TTTGGTGCGAGCGA-TTGCCTCGACCACCATCGACACAAGATGGGCC
* * *
4210559 CCGGTGCAGGCGGTTGCCTCGATCACC
64 CCGGTGCAGGCAGTTGCATCGAACACC
4210586 ATTGGCACATGCTGGCCTTTGGTGCGAGCGATTGCCTCGACCACCATCGACACAAGAT-GGCCCC
1 ATTGGCACATGCTGGCCTTTGGTGCGAGCGATTGCCTCGACCACCATCGACACAAGATGGGCCCC
*
4210650 TGGTGCAGGCAGTTGCATTGAACACC
66 -GGTGCAGGCAGTTGCATCGAACACC
** * * *
4210676 ATCAGCACATGCTGG-GTCGTGGTGC-AGGCGGTTGCCTCGACCACCATC
1 ATTGGCACATGCTGGCCT-TTGGTGCGA-GCGATTGCCTCGACCACCATC
4210724 AGCACTTGTC
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
89 8 0.07
90 106 0.90
91 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.21
Consensus pattern (90 bp):
ATTGGCACATGCTGGCCTTTGGTGCGAGCGATTGCCTCGACCACCATCGACACAAGATGGGCCCC
GGTGCAGGCAGTTGCATCGAACACC
Found at i:4211208 original size:26 final size:26
Alignment explanation
Indices: 4211170--4211248 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
4211160 TCGATCTGAT
4211170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4211196 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4211222 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4211248 C
1 C
4211249 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4212186 original size:13 final size:13
Alignment explanation
Indices: 4212168--4212192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4212158 CGATGGCACA
4212168 TGATGGCACATGG
1 TGATGGCACATGG
4212181 TGATGGCACATG
1 TGATGGCACATG
4212193 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:4212302 original size:90 final size:90
Alignment explanation
Indices: 4212223--4212392 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
4212213 GGCTGCCCTT
* * * *
4212223 TGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTACAGGCAATTGACTCA
1 TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCTGAGCCCTGGTACAGCCAATTGACTCA
4212288 ACCACCATTGGCACAAGATGGCCCC
66 ACCACCATTGGCACAAGATGGCCCC
** * * * * ** * *
4212313 TGGTACGGGCGGTTGCATCGAACTCCATCGGCACATGCTGAGCCGTGGTGCAGCCGGTTGCCTCG
1 TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCTGAGCCCTGGTACAGCCAATTGACTCA
4212378 ACCACCATTGGCACA
66 ACCACCATTGGCACA
4212393 TGCCGAGCCC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
90 66 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (90 bp):
TGGTACGGGCACTTGCATCGAACACCATCGGCACAAGCTGAGCCCTGGTACAGCCAATTGACTCA
ACCACCATTGGCACAAGATGGCCCC
Found at i:4212393 original size:45 final size:45
Alignment explanation
Indices: 4212195--4212402 Score: 161
Period size: 45 Copynumber: 4.6 Consensus size: 45
4212185 GGCACATGCA
* * * **
4212195 TCGACCATCATCGGCACAGGCT--GCCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGAGCCC--TGGTACAGGCGGTTGCC
* ** *
4212240 TCGACCACCATCGGCACAAGCTGGGCCCTGGTACAGGCAATTGAC
1 TCGACCACCATCGGCACAAGCTGAGCCCTGGTACAGGCGGTTGCC
* * * * *
4212285 TCAACCACCATTGGCACAAGATG-GCCCCTGGTACGGGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGAG-CCCTGGTACAGGCGGTTGCC
* * * * * *
4212330 TCGAACTCCATCGGCACATGCTGAGCCGTGGTGCAGCCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGAGCCCTGGTACAGGCGGTTGCC
* * *
4212375 TCGACCACCATTGGCACATGCCGAGCCC
1 TCGACCACCATCGGCACAAGCTGAGCCC
4212403 CAGTCGGGCC
Statistics
Matches: 130, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
44 1 0.01
45 124 0.95
46 1 0.01
47 4 0.03
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGAGCCCTGGTACAGGCGGTTGCC
Found at i:4212870 original size:26 final size:26
Alignment explanation
Indices: 4212834--4212912 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
4212824 CCGATCCGAT
*
4212834 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
4212860 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
4212886 CTTAGACTGGGAATGAACTGC-GTATG
1 CTTAGACTAGGAATGAACT-CTGTATG
4212912 C
1 C
4212913 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:4213212 original size:26 final size:26
Alignment explanation
Indices: 4213176--4213228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4213166 CTGGCTTGAT
4213176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
4213202 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4213228 C
1 C
4213229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4213986 original size:13 final size:13
Alignment explanation
Indices: 4213968--4213992 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4213958 CAATGGCACA
4213968 TGATGGCACATGG
1 TGATGGCACATGG
4213981 TGATGGCACATG
1 TGATGGCACATG
4213993 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:4215815 original size:45 final size:45
Alignment explanation
Indices: 4215766--4215940 Score: 190
Period size: 45 Copynumber: 3.9 Consensus size: 45
4215756 CCCTTTGGTA
* *
4215766 CGGGCACTTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTAGTG
1 CGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTG
* * *
4215811 CGGGCAGTTGCCTCGACCACCATCAGCACAAGATGGCCCCTAGTG
1 CGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTG
* * * * * *
4215856 CAGGCGGTTGCAC-CGAACACCATCGGCACATGCTGGGCCGTGGTG
1 CGGGCAGTTGC-CTCGACCACCATCGGCACAAGCTGGGCCCTAGTG
* * * * *
4215901 CGGGCGGTTGCCTTGACCACCATTGGCACATGCTGAGCCC
1 CGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGGCCC
4215941 CGGTCGGCCC
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.01
45 106 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.17
Consensus pattern (45 bp):
CGGGCAGTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTG
Found at i:4216757 original size:26 final size:26
Alignment explanation
Indices: 4216728--4216778 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
4216718 GGTCTGATCC
*
4216728 TAGACCGAGAATGAACTCTGTATGCT
1 TAGACCGAGAATGAACTCCGTATGCT
* * *
4216754 TAGACTGGGGATGAACTCCGTATGC
1 TAGACCGAGAATGAACTCCGTATGC
4216779 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACCGAGAATGAACTCCGTATGCT
Found at i:4218640 original size:26 final size:26
Alignment explanation
Indices: 4218611--4218663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4218601 CCGGTTCGAT
4218611 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
4218637 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4218663 C
1 C
4218664 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4220619 original size:90 final size:89
Alignment explanation
Indices: 4220507--4220714 Score: 229
Period size: 90 Copynumber: 2.3 Consensus size: 89
4220497 CCTTTGGTAC
* * * * * * * *
4220507 GGCACTTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCAGTTGCGTCGATCACCA
1 GGCAGTTGCCTCGACCACCATCGGCACAA-ATGGCCCCTGCTGCAGGCAGTTGCATCGAACACCA
** *
4220572 TTGGCACATGCCAGCCCTTGGTGCG
65 TCAGCACATGCCAGCCCGTGGTGCG
*
4220597 GGC-GATTGCCTCGACCACCATCGGCACGAAATGGCCCCTGCTGCAGGCTGTTGCATCGAACACC
1 GGCAG-TTGCCTCGACCACCATCGGCAC-AAATGGCCCCTGCTGCAGGCAGTTGCATCGAACACC
* **
4220661 ATCAGCACATGCTAGGGCGTGGTGCG
64 ATCAGCACATGCCAGCCCGTGGTGCG
* *
4220687 GGCAGTTGCCTCGACCACTATCGACACA
1 GGCAGTTGCCTCGACCACCATCGGCACA
4220715 TGCCAAGCCC
Statistics
Matches: 98, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
89 1 0.01
90 94 0.96
91 3 0.03
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (89 bp):
GGCAGTTGCCTCGACCACCATCGGCACAAATGGCCCCTGCTGCAGGCAGTTGCATCGAACACCAT
CAGCACATGCCAGCCCGTGGTGCG
Found at i:4221046 original size:26 final size:26
Alignment explanation
Indices: 4221008--4221060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4220998 CCAGTCCAAT
* *
4221008 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
*
4221034 CTTAGACTAGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
4221060 C
1 C
4221061 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:4221328 original size:159 final size:159
Alignment explanation
Indices: 4221033--4221328 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
4221023 AACTCCGTAT
* * * * * *
4221033 GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCGACCCACGAAATGAGCATGCGGGCGCTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAG
* * * * *
4221098 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGGTC
66 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCAGTCCCCCACTGCATGCTGTCGATC
4221163 CCGCTGCCACAACCTTCGGTCCAGCTGGG
131 CCGCTGCCACAACCTTCGGTCCAGCTGGG
* ** *
4221192 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGTGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCA
* * *
4221256 GCTGACCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCC-GATCCCTCACTGCATGCTGTCGA
65 GCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCAG-TCCCCCACTGCATGCTGTCGA
*
4221320 TCCTGCTGC
129 TCCCGCTGC
4221329 TGGTCCTACT
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 2 0.02
159 114 0.98
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCAGTCCCCCACTGCATGCTGTCGATC
CCGCTGCCACAACCTTCGGTCCAGCTGGG
Found at i:4221405 original size:26 final size:26
Alignment explanation
Indices: 4221364--4221416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4221354 CTGGTCTGAT
4221364 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
4221390 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4221416 C
1 C
4221417 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4227519 original size:45 final size:45
Alignment explanation
Indices: 4227371--4227522 Score: 162
Period size: 45 Copynumber: 3.4 Consensus size: 45
4227361 GTACAGGCAC
* * *
4227371 TTGCCTCGACCGCCATCGGCACAAGCTGTGCCCTGGTGC-AGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGG
* ** * * *
4227415 TTGCCCCGACCACCATCAACACAAGATGGCCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGG
* * * * *
4227460 TTGCATCAAACACCATCGGCACATGCTGGGCCGTGGTGCGAGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGG
*
4227505 TTGCCTTGACCACCATCG
1 TTGCCTCGACCACCATCG
4227523 ACACTTGTCG
Statistics
Matches: 83, Mismatches: 24, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
44 32 0.39
45 51 0.61
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGG
Found at i:4229372 original size:45 final size:45
Alignment explanation
Indices: 4229323--4229471 Score: 172
Period size: 45 Copynumber: 3.3 Consensus size: 45
4229313 AGGCACTTGT
* * * * *
4229323 CTCGACCGCCATCAGCATAAGCTGGGCCCTGGTGCAAGCGGTTGC
1 CTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGGTTGC
* * * *
4229368 CTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGTGATTGC
1 CTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGGTTGC
* * * * *
4229413 ATCAAACACCATCGGCACATGCTGGGCCGTGGTGCGAGTGGTTGC
1 CTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGGTTGC
4229458 CTCGACCACCATCG
1 CTCGACCACCATCG
4229472 ATACTTGTCG
Statistics
Matches: 83, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (45 bp):
CTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGAGTGGTTGC
Found at i:4230220 original size:12 final size:12
Alignment explanation
Indices: 4230205--4230239 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
4230195 GTGCTGCCGA
*
4230205 TCCTGCTACTGG
1 TCCTGCTACCGG
4230217 TCCTGCTACCGG
1 TCCTGCTACCGG
4230229 TCCTGCTACCG
1 TCCTGCTACCG
4230240 CAAACCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.40, G:0.23, T:0.29
Consensus pattern (12 bp):
TCCTGCTACCGG
Found at i:4230290 original size:26 final size:26
Alignment explanation
Indices: 4230261--4230313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4230251 CCAATCCGAT
*
4230261 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4230287 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4230313 C
1 C
4230314 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4231308 original size:45 final size:45
Alignment explanation
Indices: 4231256--4231411 Score: 168
Period size: 45 Copynumber: 3.5 Consensus size: 45
4231246 GTACGGGCAC
* * *
4231256 TTGCCTCGACCGCCATCGGCATGAGCTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
4231301 TTCCCTCGACCACCATCAGCATAAGATGGCCCCTGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTGCGGGCGG
* * * * * * * *
4231346 TTGCATCAAACACCATTGGCACAATCTGGGCCGTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTGCGGGCGG
4231391 TTGCCTCGACCACCATCGGCA
1 TTGCCTCGACCACCATCGGCA
4231412 CATGTCGAGC
Statistics
Matches: 86, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCATAAGCTGGGCCCTGGTGCGGGCGG
Found at i:4231338 original size:90 final size:90
Alignment explanation
Indices: 4231244--4231407 Score: 202
Period size: 90 Copynumber: 1.8 Consensus size: 90
4231234 GGCTGCCCTT
* * * * ** **
4231244 TGGTACGGGCACTTGCCTCGACCGCCATCGGCATGAGCTGGGCCCTGGTGTGGGCGGTTCCCTCG
1 TGGTACGGGCACTTGCATCAAACACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTCCCTCG
4231309 ACCACCATCAGCATAAGATGGCCCC
66 ACCACCATCAGCATAAGATGGCCCC
** * * * *
4231334 TGGTACGGGCGGTTGCATCAAACACCATTGGCACAATCTGGGCCGTGGTGCAGGCGGTTGCCTCG
1 TGGTACGGGCACTTGCATCAAACACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTCCCTCG
4231399 ACCACCATC
66 ACCACCATC
4231408 GGCACATGTC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 60 1.00
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (90 bp):
TGGTACGGGCACTTGCATCAAACACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTCCCTCG
ACCACCATCAGCATAAGATGGCCCC
Found at i:4232226 original size:26 final size:26
Alignment explanation
Indices: 4232197--4232249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4232187 CCGGTCTAAT
4232197 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACTTCC-TATG
*
4232223 CTTAGACTGGGGATGAACTTCCTATG
1 CTTAGACTGGGAATGAACTTCCTATG
4232249 C
1 C
4232250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCTATG
Found at i:4232654 original size:170 final size:170
Alignment explanation
Indices: 4232223--4232661 Score: 481
Period size: 170 Copynumber: 2.6 Consensus size: 170
4232213 ACTCCGTATG
* * * **
4232223 CTTAGACTGGGGATGAACTTCCTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGC
* * *
4232288 CGGCCAGAGAGGTAGGATGCGCAAGCCAAGGATCGACCTGAGCCCCTCAGGGTGCTGTCAATCTC
66 CGGCCAGAGAGGTAGGATGCGCAAGCCAAGGATCAACCTGAGCCCCTCAGCGTGCTGTCAATCCC
* ** ** * *
4232353 GTTGTGGGTCTTACTATTGCAACCCTCAGTCTGGTTTGAT
131 GCTACGGGTCTTACTACCGCAACCCTCAGTCCGGTCTGAT
* * * *
4232393 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGA-TCAG
1 CTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGT-ACTCAG
* ** ** * * *
4232457 CTGGCCAGAGAGGTAGGATATGCAAGCCGGGGATCAA-CTCGATCCCCTCTGCGTGCTGTCGATC
65 CCGGCCAGAGAGGTAGGATGCGCAAGCCAAGGATCAACCT-GAGCCCCTCAGCGTGCTGTCAATC
*
4232521 CCGCTACGGGTCTTACTGCCGCAACCCTCAGTCCGGTCTGAT
129 CCGCTACGGGTCTTACTACCGCAACCCTCAGTCCGGTCTGAT
* * *
4232563 CTTAGACT-GGGATTGCA-TGACGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGTACTTA
1 CTTAGACTGGGGA-TGAACT-ACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCA
* * * ** *
4232626 GCCAGTCGGAGAGGCGGGATGCGCAAGCCATGGATC
64 GCCGGCCAGAGAGGTAGGATGCGCAAGCCAAGGATC
4232662 CTTGTATTTT
Statistics
Matches: 220, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
169 8 0.04
170 212 0.96
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGC
CGGCCAGAGAGGTAGGATGCGCAAGCCAAGGATCAACCTGAGCCCCTCAGCGTGCTGTCAATCCC
GCTACGGGTCTTACTACCGCAACCCTCAGTCCGGTCTGAT
Found at i:4239312 original size:26 final size:26
Alignment explanation
Indices: 4239283--4239335 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4239273 CCGGTCCGAT
4239283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4239309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4239335 C
1 C
4239336 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4243780 original size:26 final size:26
Alignment explanation
Indices: 4243751--4243801 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4243741 AATCCGATCT
*
4243751 TAGACTAGGAATGAACTCCGTATGCG
1 TAGACTAGGAATGAACTACGTATGCG
*
4243777 TAGACTGGGAATGAACTACGTATGC
1 TAGACTAGGAATGAACTACGTATGC
4243802 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTACGTATGCG
Found at i:4246827 original size:892 final size:891
Alignment explanation
Indices: 4239212--4250717 Score: 13516
Period size: 903 Copynumber: 12.9 Consensus size: 891
4239202 ACGCCCACAG
* * * *
4239212 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT-CGCAACCCCCGGTCCG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-TCCGCAACCCTC-ATTCG
4239276 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
64 GTCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ***
4239341 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGC-GAGATGTAAAAGCCGGGG
128 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGG
* * * * * * * ** **
4239405 ATCAACCGAGTGCCCCTTTGTGTGCTGCCGATCCTACTGCCGCAATGCTCGGTCTGGTCCAATCT
192 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* * *
4239470 TAGACTGGGACTGAACTCCGAATGCCTAAGCCAACCGACGAAATGAGCGGGCGGACGGGCGGGCG
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGC-
* *
4239535 GGCGGGCAGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
317 -GC-GG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
4239600 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTGTATCGCTTGTAAATTCAGA
378 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
4239665 CAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGG-ATTGATGACTTGTTTTCTATTTTTCACG
443 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-AGACGACTCGTTTTCTATTTTTCATG
* * * * *
4239729 A-TTTTCAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
507 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAA
* * * * * *
4239793 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCTCAAAATATTTCAGCTATAAACTCAAAG
572 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
4239858 TGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCGATTTCAGACAC-TTAATGGCTACTGGC
637 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
4239922 AGCAAACCAGTAAAATCTCAAATGATCTTTAAGGGGGTGTGA-TTCTCGA-GTTTGATGAGGGAT
702 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
4239985 AGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCAT-TGCGCACA-CCCCCCGG-
767 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * *
4240047 -CCCCCGATCGCCGGAACCCCAAGGCCGTCGGTCAGGTTCTCCGACGTTGCTCCAGTGATGGTGC
832 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C--TG-----GCGATGGTGC
*
4240111 CTCGA
887 CCCGA
* * * * *
4240116 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCAGTCTAG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTC-GG
* *
4240181 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTGTCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
4240246 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTAGAGTGGCA-GATGCGCAAGTCGGGGAT
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
** * ** * * ** * *
4240310 CGCCCAGGTCCCCCTCTATGTGCTACCGATCTTGCTTTCGCAACCCTTGGTTTGGTCTGATCTTA
194 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
*
4240375 GAGTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGG
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGC--G
* * * * *
4240440 CAGGCGGGCACTACGTCGGCCAGAGAGACAGGACGTGCAAGCCGTGGATCGATAGGGTGGTTGGT
318 C--G-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
4240505 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCGTTTTTATGGCTGGTAAATTCATACA
380 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
4240570 ATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTTGTTTTCTATTTTTCATGATT
445 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * *
4240635 TTCAAAACTTTTTACGGTTCGGGATTTTTTAGAATTTTTTCAGAAGGA-TTTTTGGACCCAAACT
510 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTT-GCCCCAAACT
* * * *
4240699 TGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCAAAGTG
574 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4240764 TACAAGATTTTGTGACCATTTGAAAAAAGGGT-CCCATTTCAGACACTTTAATGGCTACTGGTAG
639 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
4240828 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAG
704 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
4240893 GGGGCCAATATAAGGGCCAAGTGCTAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCCC
769 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* *
4240957 CCCCGATCGTCGGAACCCCAATGCCGCCCGGTCAAGTTCTCCGACGATGCTCCGACGATGTTGCC
834 CCCCGATCGTCGGAACCCCAATGCCG-CCGGTCAGGTTCT-C--C--TG----G-CGATGGTGCC
* *
4241022 CAGG
888 CCGA
* * * * * * * * * **
4241026 TGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATCTGCTGCTGTAATCCTCAGTCAAC
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTC-GG
* * * *
4241091 TCCAATCTTATACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
4241156 CAACACACGAAACGAGTGTGCAGGCGCTCAACCGGCCAAAAGGGC-GAGATGTGCAAGCCGGGGA
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGGA
** * * * * * *
4241220 TCGGCCGGGTCTCCCTCTGCGTG-TGCCGATCCTACTGCCACAGCCCTCGGTCCGGTCTGATCCT
193 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
* *
4241284 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA----GCAGGC-GG-GC-GGG
258 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGG
* *
4241342 CACTACG-CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAC
323 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** *
4241406 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCC
388 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * **
4241471 ATAAGCCTTCACATAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
4241536 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA-TTTTTGACCCCAAACTTGGTGGAC
518 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGAC
* * *
4241600 GTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
582 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
4241665 TTTGTGACCATTTTACAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
647 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4241730 TAAAATCTCGAAA-GCTCTTTAA-GGGGTGTGAGTTCTTC-AGGTTTGATGAGGGATAGGGGGCC
712 TAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
4241792 AATATAAAGGCCAAGTACCAGAACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGA
775 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* *
4241857 TTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCT-GCGATGCTCCGACGATGCTACCCCGG
840 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGA---T--G--G-TG---CCCCGA
* * * * * * * *
4241919 TGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTC-ATTCGG
* * * **
4241984 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCATATTACTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
4242049 CAACACACAAAACGAGCATGCGGGCGCTCAGGCAGCAAGAAGGGCCA-GATGCGCAAG-CGAAGG
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCAGGATGCGCAAGCCG-GGG
* * * * *
4242112 ATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCACAACCGTCGGTCTGGTCTGATCT
192 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* * *
4242177 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAATCAACGAAACGA--------GC-GTC-C-GG
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGG
* * *
4242230 GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTG
322 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
4242295 GGCACATCTTCATATTTCTGCATTTGCCGATGCCATTTTTTTGGCTTGTTAATTCATACAATGGT
387 GGCACATCTTCATATTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * *
4242360 CCCTTTAAGTCCTTCACGTGGAAGTTTTCATGGCAAGTTTGACTCGTTTCTTTATTTTTTTCACG
450 CCC-TTAAG-CCTTCACGT-GAAG-TTTCATGGCAAG-ACGACTCGTTT-TCTA--TTTTTCATG
** * *
4242425 ATTTTCAAAACTTTTTGA-GGTTCAGGATTTTCTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCC
507 ATTTTTGAAACTTTTT-ACGGTTCGGGATTTT-TTAAAA-TTTTTTCGGAAGGAGTTTTTGCCCC
* *
4242489 AAACTTGGTAGACGTGATCCTTATACTTTTGTTGGCTATGC-CATTAAAAAATTCAGCT--AAAC
569 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACA--AAAAAATTCAGCTAAAAAC
* *
4242551 TCGAAGGTGTACAAGATTTTTGGGACCATTTTCAAAAAAG-GCATCCCCCATTTTCAGACACTTT
631 TCGAA-GTGTACAAGA-TTTTGTGACCA-TTTGAAAAAAGTG--T-CCCCA-TTTCAGACACTTT
* *
4242615 AATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGG
689 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
4242680 TTTGATGAGGGAT--GGGGCCAATATAAAGGGCCAAGTACCAG-ACCCATTGCACATCATGT-CG
754 TTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
4242741 CA-ACCACCCCC-G--CCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTGCTGGCGA-
818 CACACC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGAT
*
4242801 --TGCCTCCGG
882 GGTGCC-CCGA
* * * **
4242810 CGATG----GTGC--C-CCA--AC---CCCGAGCCCAGCATGTGCTGT-TGCAACCCTTGGTTCG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-TCCGCAACCC-TCATTCG
** * * * *
4242862 GTTTGATCTTAGACTGGGAATGAAATCTGTATGCTTCGACTAGGAATGAACT-CGTATGCCTAAG
64 GTCCGATCTTAGACTGGGAATGAACTC-CTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
4242926 TCAACTCACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGGA
128 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * * *
4242991 TCGGTCGGGTCACCCTTTACGTGTTGTCGATCCTGTTGCTGCAACCCTCGATCTGGTCTGATCTT
193 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
* * *
4243056 AGACTGGGCATGAACTCCATATGCCTAAGCCAATCGACGAAACGA----GCGGGC-GG-GC-GGG
258 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGG
* * * * **
4243114 CACTACACCAGCTAGAGAGAC-GGATGTGCAAGCCGTGGATC-AGTAGGGTGGTAGGTACGTTTA
323 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTA
* ** * *
4243177 GGCAGATCTTCATATTTCTGTGTGCCAATGCCATTTTTACGGCTTGTAAATTAATACAATGGTCC
387 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
4243242 TTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAA
452 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * ** **
4243307 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTCGGCCCCAAACTTGGTAGAC
517 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGAC
* * * *
4243372 GTGATTCTTTTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGAT
582 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
4243437 TTTTTGACCATTTGAAAAAATTGTCTTCAATTT-AGACACCTTAATGGCTACTGGCAGCAAACCT
647 TTTGTGACCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* **
4243501 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGATA
711 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * **
4243566 TTATACGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCCG-ACCCTTGA
776 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCCCCCCCGA
* * *
4243630 TCGTCGGAACCCCAATGTCGCAGGTCAAG---TCC-GGCGATGGTGCCCCGA
840 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGATGGTGCCCCGA
* * * * * * * *
4243678 CGAAGAAAAATGCAGCATCAGCACATGCCCAAACCCAGCATGTGC-TGCGACAACCCTCGGTCCA
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCG-CAACCCTC-ATTCG
* * * *
4243742 ATCCGATCTTAGACTAGGAATGAACTCCGTATGCGTAGACTGGGAATGAACTACGTATGCCTAAG
64 GTCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
4243807 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
128 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* ** * * * * * * * *
4243872 TAGGCCGGGTCCCCCTCTACGTACTACCGATCCTGCTGCCACAACCCTCAGTCCGATCTCATCTT
193 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
*
4243937 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC-GG-GC-GGG
258 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGG
* * **
4243999 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGCTCGATAGGGCAGTAGGTGGGTTTAG
323 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
4244064 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGATTGTAAATTCATACAATGGTCCC
388 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
4244129 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTACGTGATTTTTTAAAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
4244194 TTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGCAGAC
518 TTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGAC
* * * * *
4244258 GTGATCCTTGTATTTTTTTTGCCATGCATAAAAAAATTCAACTAAAAACTCGAAGTGTACACGAT
582 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
4244323 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
647 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
4244388 TAAAATCTCAAATGCTCTTTCAGGAGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAA
712 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
4244453 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
777 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * * *
4244517 GCCGGAACCCCAACGCCACCGGTCAAGTTCTCC-GACAATGGTGCCCCGG
842 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGATGGTGCCCCGA
* * * * **
4244566 TGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCCGTAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTC-GG
* * *
4244631 TCTGATCTTAGACTGGGAATGAACT-CTGTAGCTTAGACTGGGAATGAACT-CGTATGCCTAGGT
65 TCCGATCTTAGACTGGGAATGAACTCCTAT-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
4244694 CAACCCATGAAACGAGCTTGCGGGCGCTCAGTCGGCCAGA---G--GGATGCACAAGCTGGGGAT
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * ** **
4244754 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGATGTCGTAACCCTCAATCCAGTCTGATCTTA
194 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * *
4244819 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGGGCAGAC-GG-GC-GGGC
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGGC
* ** **
4244881 ACTACGCTGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGG
324 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
4244946 AACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
389 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
4245011 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACT
454 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * *
4245076 TTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTTGGCCCCAAACTTGGTAGACG
519 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTT-GCCCCAAACTTGGTAGACG
*
4245140 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
4245205 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTAGCAGCAAACCTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
4245270 AAAATCTCAAATGCTCTTTAAGGGAGTGTGACTTCTCGAGGCTTGATGAGGGACAGGGGGCCAAT
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
4245335 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGGCCTCCCCGAT
778 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCGGCCCCCCCGAT
*
4245400 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTCGATGGTCCGACGATGGTGCCTCGA
841 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C--T-G---G-CGATGGTGCCCCGA
* *
4245461 CGAAGAAAAATGCGACACCAGCACATGCCCGA-CCCAGCATGTGCTGCCGCAACCCTCA----GT
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTCGGT
* *
4245521 CCGA--TT---C-------G-------AT-CTTAGA-TTGGAATGAACTCCGTATGCTTAAGTCA
66 CCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * ** * *
4245565 TCCCACTAAACAAGTGTGCGGGTGTTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGAGGATCG
131 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * * *
4245630 GTCGGGTCCCCCTCTGCGTGCTACCGATCATGCTGCCACAACCCTCGAT-TCGGTCCGATCTTAG
196 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAG
* * * * * * *
4245694 ACTGGGAATGAACTCTGTATGCCTAAGCCAACAGATGAAATGAGCGGACGGACGGGCGGGCGGGC
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCG-GGGC
*
4245759 ACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
324 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
4245824 CACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
389 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
4245889 TAAGCCTTCACGTGAAGTTTCATGCCTAGAC-AGCTCGTTTTCTATTTTTCATGATTTTTGAAAC
454 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
4245953 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTTGCCCCAAACTTGGTAGACA
518 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACG
* * *
4246018 TGATCCTCGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
4246083 TTGCGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTAT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
4246148 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAAT
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
4246213 CTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCACCCGATTG
778 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * * * *
4246278 TCGAAACACCAATGTCGTCGGTCAGGTTCT-CTGGTGATGGTGCCCCGA
843 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGATGGTGCCCCGA
* * * * * *
4246326 CGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGCATCTACTTTCGCGACCCTCAATTCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTC-ATTCGG
* * ** *
4246391 TCTGATCTTAGACTGGGAATGAACTCCTATCCTTAGACTACGAATGAACTCCATATGCCTAAGTC
65 TCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * *
4246456 AACCTACGAAACGAGCGTACGGGCGCTCAGCCGGATAGAGGGGCAGGATGCGTAAGCCGAGGATC
130 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * *
4246521 GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCAGGTCCGATCTTAG
195 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
* *
4246586 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGCGTGGGC
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCG-GGGC
* * * ** * * *
4246651 ACTATGGCGACCAGAGAGATAGGATGCGTAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGG
324 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
4246716 CACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCT
389 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
4246781 TAAGCCTTCACGTGAAGTGTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCATGATTTTTGAAAC
454 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
4246845 TTTTTACGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTTGCCGCAAACTTGGTATACG
518 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACG
* *
4246910 TGATCCTTGTATTTTTCTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGAT
583 TGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
4246974 TTTGTGACCATTTGAAAAAAGTGTCCGCATTTCGGACACTTTAAAGGCTACTGGCAGCAAACCTG
647 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4247039 TAAAATCTCAAATGCGCTTTAAGGGCGG-GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
712 TAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
4247103 ATATAAAGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
776 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* *
4247168 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GGCGATGCTGGTGCCTCGA
841 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGA---TGGTGCCCCGA
* * * *
4247221 CGAAGAAAAATACGGCACCGGCACATTCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TCGGT
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTCGGT
* *
4247282 ----TC----A----G--T---C-CC-AT-CTTAGACAGGGAATGAACTCCGTATGCCTAGGTCA
66 CCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** * * *
4247327 ACCCACGAAACAAGCGTACGGGCGCTCAGTCGGCCAGAGACGCGGGATGCACAAGCCGAGGATCG
131 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * ** * ** * *
4247392 ACCGGGTCCCCCTCTGCGTGCTGCTGATCCTATTGCTGCAACCCTCATTCCT-GTCCGATCTTGG
196 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAG
* * * * *
4247456 ATTGGGAATGAACTCCGTATCCCTAAGTCAACCGACGAAACGAGCAGGCGGGCGGGCTG-GCAGG
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GCG-GGG
* * *
4247520 CACTACGTCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
323 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
4247585 GCACATCTTTATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCTC
388 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
4247650 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * ** * * * *
4247715 TATTTGCGGTTCATGATTTTTTAAAATTTTTTCGAAAGGTGTTTTAGCCCCAAACTTGGTAGACA
518 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACG
* *
4247780 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
4247845 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
4247910 AAAATCTCAAATGATCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-AGGGCCAAT
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
4247974 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCCTCGATC
778 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-CGATC
* * * *
4248038 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCTATGCTCTGGCGATGGTTCCTCGA
842 GTCGGAACCCCAATGCCGCCGGTCAGG-T-T----C--T-C-CTGGCGATGGTGCCCCGA
* * * * * **
4248098 TGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTC-GG
* * *
4248163 TCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTC-CTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
4248228 CAACCCACGAAACGAGTGTACGGGCGCTCAACCGGCTAGAGGGGCAGGATGTGAAAGTCGAGGAT
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * *
4248293 CGATCAGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCTGATTTGATCTTA
194 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* *
4248358 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGAACGGGCGGACGGGCG
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG--CGGGCGG--GCGC-
* * * *
4248423 GGCGTGCACTACGTCGGCCAGAGAGACGGGATGCCCAAGCCGTGGATTGATAAGGTGGTAGGTGG
319 GG-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
4248488 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
382 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
4248553 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACGATTTT
447 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** ** * * * *
4248618 CAAAACTTTTTGTGGTTCGGGATTTCTTAAAATTGTTTT-GGAAGGAGTTTTAGCCACAACCTTG
512 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* *
4248682 GAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
576 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
4248747 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCA
641 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
4248812 AGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTGATGAGGGATAGGG
706 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
4248877 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-AACCCCCCGGCCCCC
771 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
** * *
4248941 CCGATCACCGGAAACCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCC
836 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT----C----CT--GGCGATGGTG-CCCC
4249006 G-
890 GA
** * * * *
4249007 CGAAGAAAAATGCTACACCAGCACATGCCCAAGCCCAGCACGTGCTACCGCAACCCTCGATCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTC-ATTCGG
4249072 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** * *
4249137 CAACCCACGAAACGAGCGTGCGGGCACTTAGCAGGCCAGAGGGGTGGGATACGCAAGTCGGGGAT
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * ** * **
4249202 TGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCATAACCCTCGATCTGGTCCCATCTTA
194 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * * * * ** *
4249267 GACTAGGAATGAACTCCGTATACCTAAGCCAACCGACAAAAAGAGCAGGCCGACAAGCGAGCGGG
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCG-GGG
* ** * *
4249332 CACTATGCCGGCCAGAGAGATAGGATGCGCAAGCCGTGGGTCGATAGGGCGGTAGGTGGGTTTAG
323 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
4249397 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
388 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
4249462 TTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGACAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * *
4249527 TTTTTATGGTTCAGGATTTCTTAAAATTTTTTCAGAAGGAGTTTTAGTCCCAAACTTGGTAGACG
518 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACG
* *
4249592 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
4249657 TTGTGACCATTTGAAAAAAGTGCCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
4249722 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * * **
4249787 ATAAGGGATAAGTACTAGCACCAATCGCACATCATGTGCGCACA-CCCCCCGG-CCCATCGATCG
778 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * *
4249850 CCGGAACCCCAATGCCGCCGATCAGGTTCTCC-CGCGATGGTGCCCCGA
843 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGATGGTGCCCCGA
* * * ** * * *
4249898 CAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCGCAACCCTTGATCCAG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCC-TCATTCGG
* * * *
4249963 TTCGATCTTAGACTGGGAATGAACTCAATATGCTTAGATTGGGAATGAACTCCGCATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTC-CTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
4250028 CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT
129 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * * *
4250093 CGATCGGGTCCCCCGCTACATGCTGCCGATCCTACTACCGGAACCCTCAGTCTGGTCTGATCTTA
194 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * *
4250158 GACTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAATGAGCGGACAGGC-GG-GC-GGGC
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGGC
* * * *
4250220 ACTACTCCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGG
324 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
4250285 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTAGTAAATTCATACAATGGTCCC
389 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT-GTAAATTCATACAATGGTCCC
* *
4250350 TTTAAGCCTTCACGTGGAAGTTTCAGGGCAAGACAACTCGTTTTCTATTTTTTCATGCA-TTTTG
453 -TTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCATG-ATTTTTG
* * * * * *
4250414 AAAACTTTTTTCGGTTTCGAGA-TTTTTCAAATGTTTTTCGGACGGATTTTTTGGCCCAAACTTG
514 -AAACTTTTTACGG-TTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * *
4250478 GTAGACGTG-TCCTTTGTATTCTTTGTTGG-AGTGCACCAAAACAATTCATCTACAAACTCGAAG
576 GTAGACGTGATCC-TTGTATT-TTTGTTGGCA-TGCA-CAAAAAAATTCAGCTAAAAACTCGAAG
* * *
4250541 TGTACAA-ATATTGTGACAATTTGAAAAAA-AGTCCCCATTTCAGACACTTTAATGGCTACTGGC
637 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
4250604 AGCAAACCTATAAAATCTCAAATGCTCTTTAATGGGGTGTTGAGTTCCCGAGGTTTGATGAGGGA
702 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAGGGA
* * * *
4250669 TAGAGGGCCAATATAAGGGCCAAATACCATCA-CCATCACACATCCATGT
766 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-CATGT
4250718 ACGCCGGCCA
Statistics
Matches: 9202, Mismatches: 1114, Indels: 582
0.84 0.10 0.05
Matches are distributed among these distances:
864 83 0.01
865 59 0.01
866 54 0.01
867 16 0.00
868 52 0.01
869 160 0.02
870 683 0.07
871 23 0.00
872 40 0.00
873 3 0.00
874 122 0.01
875 13 0.00
876 59 0.01
877 72 0.01
878 580 0.06
879 127 0.01
880 115 0.01
881 737 0.08
882 64 0.01
883 27 0.00
884 56 0.01
885 69 0.01
886 474 0.05
887 131 0.01
888 108 0.01
889 35 0.00
890 119 0.01
891 310 0.03
892 753 0.08
893 743 0.08
894 270 0.03
895 127 0.01
896 13 0.00
897 8 0.00
898 6 0.00
899 1 0.00
900 36 0.00
901 9 0.00
902 106 0.01
903 1001 0.11
904 386 0.04
905 32 0.00
906 68 0.01
907 61 0.01
908 71 0.01
909 771 0.08
910 316 0.03
911 33 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCATTCGGT
CCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCGATGGTGCCCCGA
Found at i:4248198 original size:26 final size:26
Alignment explanation
Indices: 4248169--4248221 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4248159 CTGGTCCGAT
4248169 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
*
4248195 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
4248221 C
1 C
4248222 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:4249107 original size:26 final size:26
Alignment explanation
Indices: 4249078--4249130 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4249068 CCGGTCCGAT
4249078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4249104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4249130 C
1 C
4249131 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4249723 original size:903 final size:900
Alignment explanation
Indices: 4247292--4250717 Score: 4592
Period size: 909 Copynumber: 3.8 Consensus size: 900
4247282 TCAGTCCCAT
* * * *
4247292 CTTAGACAGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACAAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * *
4247357 CGGCCAGAGACGCGGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * * * *
4247422 TATTGCTGCAACCCTCATTCCT-GTCCGATCTTGGATTGGGAATGAACTCCGTATCCCTAAGTCA
131 TACTACCGCAACCCTCAGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
* * * * * * * * *
4247486 ACCGACGAAACGAGCAGGCGGGCGGGCTGGCAGGCACTACGTCGACCAGAGAGACGGGATGCGTA
195 ACCGACAAAAAGAGCAGGCGGACAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
4247551 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4247616 ATTTTTGTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
4247681 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTCATGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCAGGATTTCTTAAAATTTTT
* * * *
4247746 TCGAAAGGTGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TCGGAAGGAGTTTTAG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4247811 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4247876 CAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGAGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
4247941 GTTCTTGAGGTTTGATGAGGGATA-AGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
4248005 TCATGTGCGCACACCCCCCCGCCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
714 TCATGTGCGCACACCCCCCGGCCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * * * *
4248070 CGGCTATGCTCTGGCGATGGTTCCTCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
778 C-GC-ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCAAGCCCA
* * * * * *
4248135 GCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCTGTATG
841 GCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * *
4248195 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
4248260 CGGCTAGAGGGGCAGGATGTGAAAGTCGAGGATCGATCAGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * ** *
4248325 TGCTGCCGCAACCCTC-GATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TACTACCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
* * * * *
4248389 ACCGACGAAACGAACGGGAACGGGCGGACGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGA
195 ACCGAC-AAA--AA---GAGCAGGCGGACAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
4248454 TGCCCAAGCCGTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
254 TGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
4248519 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
319 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
4248584 ACAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTCTTAAA
384 GCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCAGGATTTCTTAAA
* * *
4248649 ATTGTTTT-GGAAGGAGTTTTAGCCACAACCTTGGAAGACGTGATCCTTGTATTTTTTTTGGCAT
449 ATT-TTTTCGGAAGGAGTTTTAGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
4248713 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
512 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
4248778 CCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGG
577 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
4248843 GGTGTGAGTTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
642 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
4248908 TCGCACATCATGTGCGCAAACCCCCCGGCCCCCCCGATCACCGGAAACCTAATGCCGCCGGTCAG
707 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
*
4248973 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCCG-CGAAGAAAAATGCTACACCAGCACATGCCC
772 GTTCTCCG-C-ATGCTCCGGCGATGGTG-CCCCGACGAAGAAAAATGCTGCACCAGCACATGCCC
* *
4249037 AAGCCCAGCACGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
834 AAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTA
4249102 TG
899 TG
* * *
4249104 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
4249169 AGGCCAGAGGGGTGGGATACGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* ** * *
4249234 TGCTACCATAACCCTC-GATCTGGTCCCATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCA
131 TACTACCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
* * * * **
4249298 ACCGACAAAAAGAGCAGGCCGACAAGCGAGCGGGCACTATGCCGGCCAGAGAGATAGGATGCGCA
195 ACCGACAAAAAGAGCAGGCGGACAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
4249363 AGCCGTGGGTCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
4249428 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
4249493 TGACTCGTTTTCTATTTTTCACGATTTTCGACACTTTTTATGGTTCAGGATTTCTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCAGGATTTCTTAAAATTTTT
*
4249558 TCAGAAGGAGTTTTAGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTAG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4249623 AAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4249688 TAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * *
4249753 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGATAAGTACTAGCACCAATCGCACA
649 GTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** *
4249818 TCATGTGCGCACACCCCCCGG-CCCATCGATCGCCGGAACCCCAATGCCGCCGATCAGG-T-T--
714 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
4249878 -C-T-C-CC-GCGATGGTGCCCCGACAAAGAAAAATG-TGGCACCAGCACATGCCCAAGCCCAGC
779 GCATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCT-GCACCAGCACATGCCCAAGCCCAGC
* * * *
4249937 ATGTGC-AGCCGCAACCCTTGATCCAGTTCGATCTTAGACTGGGAATGAACTCAATATG
843 ATGTGCTA-CCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * * *
4249995 CTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
4250060 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTACATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
4250125 TACTACCGGAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAA
131 TACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
* * * *
4250190 CCGAC-GAAA-TG-A-GCGGACAGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCACAA
196 CCGACAAAAAGAGCAGGCGGACAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
4250251 GCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
4250316 TTTTTATGGCTTAGTAAATTCATACAATGGTCCCTTTAAGCCTTCACGTGGAAGTTTCAGGGCAA
326 TTTTTATGGCTT-GTAAATTCATACAATGGTCCC-TTAAGCCTTCACGT-GAAGTTTCATGGCAA
* * * *
4250381 GACAACTCGTTTTCTATTTTTTCATGCATTTT-GAAAACTTTTT-TCGGTTTC-GAGATTT-TTC
388 GACGACTCATTTTCTA-TTTTTCACG-ATTTTCG-AAACTTTTTGT-GG-TTCAG-GATTTCTTA
* * *
4250442 AAATGTTTTTCGGACGGATTTTTTGGCCCAAACTTGGTAGACGTG-TCCTTTGTATTCTTTGTTG
447 AAAT-TTTTTCGGAAGGA-GTTTTAGCCCAAACTTGGTAGACGTGATCC-TTGTATT-TTTGTTG
* * * * *
4250506 G-AGTGCACCAAAACAATTCATCTACAAACTCGAAGTGTACAA-ATATTGTGACAATTTGAAAAA
508 GCA-TGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
4250569 A-AGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
571 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* ** *
4250633 TAATGGGGTGTTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAATACCA
636 TAAGGGGGTG-TGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCA
* *
4250698 TCA-CCATCACACATCCATGT
700 GCACCCATCGCACAT-CATGT
4250718 ACGCCGGCCA
Statistics
Matches: 2245, Mismatches: 242, Indels: 81
0.87 0.09 0.03
Matches are distributed among these distances:
887 113 0.05
888 22 0.01
889 14 0.01
890 38 0.02
891 281 0.13
892 28 0.01
893 123 0.05
894 92 0.04
895 29 0.01
896 1 0.00
900 1 0.00
901 1 0.00
902 37 0.02
903 649 0.29
904 4 0.00
906 3 0.00
908 6 0.00
909 731 0.33
910 72 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
TACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
CCGACAAAAAGAGCAGGCGGACAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCAGGATTTCTTAAAATTTTTT
CGGAAGGAGTTTTAGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGC
ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCAAGCCCAGCATG
TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATG
Found at i:4251407 original size:26 final size:26
Alignment explanation
Indices: 4251378--4251430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4251368 CCAATCCGAT
*
4251378 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAACGAACTCCGTATG
*
4251404 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGAATGGGAACGAACTCCGTATG
4251430 C
1 C
4251431 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAACGAACTCCGTATG
Found at i:4252565 original size:490 final size:488
Alignment explanation
Indices: 4251636--4252613 Score: 1492
Period size: 490 Copynumber: 2.0 Consensus size: 488
4251626 GGCGGGCACA
* *
4251636 ACGCTGGCCAGAGAGACGGGATACGCAAGACGTGCATCGATAGGGTGATAGGTGGGTTTAGGCAC
1 ACGCCGGCCAAAGAGACGGGATACGCAAGACGTGCATCGATAGGGTGATAGGTGGGTTTAGGCAC
* * *
4251701 ATCTTCATAGTTCTACATGCCAATGCCATTTTTATGGTTTGTTAGTTCATACAATGGTCCCTTAA
66 ATCTTCATAGTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
4251766 GCCTTCACGTGAAGTTTCATGGCAAGATGGCTCATTTTTTATTTTTCATGATTTTTGAAACTTTT
131 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** *
4251831 TACGGTTCGAGATTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
196 TACGGTTCGAGATTTTTGAAAATTTCTTCGAAACCAGTTTTGGCCCCAAACTTGGTAGACATGAT
* *
4251896 CCTTGTATTTTTGTTGGAGTGCACAAAACAATTCATCTAAAAACTCGAAGTGTACAAGATATTGT
261 CCTTGTATTTTTGTTGGAGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATATTGT
* *
4251961 GATAATTTGAAAAAAAAGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAA
326 GACAATTTGAAAAAAAAGTCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAACCTGTAAAA
*
4252026 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATAA
391 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
4252091 GGGCCAAA-TACCATCACCCATCACACATCATGT
456 AGG-CAAAGTACCAGCACCCATCACACATCATGT
* * * * * *
4252124 ACGCCGGCCAAAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTTGGTTTAGGCAC
1 ACGCCGGCCAAAGAGACGGGATACGCAAGACGTGCATCGATAGGGTGATAGGTGGGTTTAGGCAC
* *** *
4252189 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAA
66 ATCTTCATAGTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
4252254 GCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
131 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * **
4252319 TACGGTTTGGGATTTTTGAAAATTTTTTCAGAAATCCTTTTTTGGCCCCAAACTTGGTAGACATG
196 TACGGTTCGAGATTTTTGAAAATTTCTTC-GAAA-CCAGTTTTGGCCCCAAACTTGGTAGACATG
* *
4252384 ATCCTTGTATTTTTGTTGGCA-TGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTT
259 ATCCTTGTATTTTTGTTGG-AGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATAT
* ** *
4252448 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
323 TGTGACAATTTGAAAAAAAAGTCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAACCTGTA
*
4252513 AAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
388 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
4252578 TAAAGGCAAAGTACCAGCACCCATCGCACATCATGT
453 TAAAGGCAAAGTACCAGCACCCATCACACATCATGT
4252614 GCGCACACCC
Statistics
Matches: 440, Mismatches: 46, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
488 198 0.45
489 8 0.02
490 233 0.53
491 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (488 bp):
ACGCCGGCCAAAGAGACGGGATACGCAAGACGTGCATCGATAGGGTGATAGGTGGGTTTAGGCAC
ATCTTCATAGTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTGAAAATTTCTTCGAAACCAGTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGAGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATATTGT
GACAATTTGAAAAAAAAGTCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
AGGCAAAGTACCAGCACCCATCACACATCATGT
Found at i:4252807 original size:26 final size:26
Alignment explanation
Indices: 4252771--4252823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4252761 CCAGTCCGAT
*
4252771 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
4252797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4252823 C
1 C
4252824 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4253608 original size:14 final size:11
Alignment explanation
Indices: 4253572--4253602 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
4253562 CGGTCAGGTT
4253572 CTCCGGCGATG
1 CTCCGGCGATG
4253583 CTCCGGCGATG
1 CTCCGGCGATG
4253594 CTCCGGCGA
1 CTCCGGCGA
4253603 CGATGCCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.39, G:0.35, T:0.16
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:4254601 original size:26 final size:26
Alignment explanation
Indices: 4254565--4254617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4254555 CCGATCCGAT
*
4254565 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4254591 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4254617 C
1 C
4254618 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4255016 original size:880 final size:877
Alignment explanation
Indices: 4252123--4255451 Score: 4022
Period size: 880 Copynumber: 3.8 Consensus size: 877
4252113 ACACATCATG
* * * *
4252123 TACGCCGGCCAAAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTTGGTTTAGGCA
1 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
4252188 CATCTTCATATTTCTG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTT
66 CATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
4252252 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTT
** * **** *
4252317 TTTACGGTTTGGGATTTTTGAAAATTTTTTCAGAAATCCTTTTTTGGCCCCAAACTTGGTAGACA
195 TTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAA-GGAGTTTTGGCCCCAAACTTGGTAGACG
* *
4252382 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
258 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
4252447 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
323 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
4252512 AAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
388 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * **
4252577 ATAAAGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCTCCCAATCAT
453 ATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCC-CCCGATCGC
*
4252642 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGAA
517 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * *
4252707 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAAAACCCGGTCC-AGTCCGAT
582 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-G-AAACCCCGGTCCGA-TCCGAT
*
4252771 CTTAGAATGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
644 CTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * *
4252835 CCCAAAACAAGTGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGATC
708 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATC
* * * * * * *
4252900 GGGTTCCCCTCTGTGTGTTGTCGATCCTACTACCGCAACCCTCGGTCCGATCCGATATTAGACTA
773 GGGTCCCCCTCTGTGTGCTGTCG-------T-----AACCCTCGGTCTG-GCCAATCTTAGACTG
*
4252965 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCAAGCGGGCGAGCGGGCGGGCGGGCAC
825 GGAATGAACTCCGTATGCCTAAGCCAACCGACG-AG-AA-----CGA---GGCGGACGGGCAC
* * * * *
4253028 GACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGCATCGATAGGGTGATAGGTGGGTTTAGGCA
1 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * * *
4253093 CATCTTCATAGTTCTACGTGCCAATGCCATTTTTATGGTTTGTTACTTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
4253158 AGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCATTTTTTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
4253223 TTACGGTT-TGAGATTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
196 TTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
4253287 ATTCTTGTATTTTTTTTGGCATGCACAAAAAAGTTGAGCTAAAAACTCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
4253352 GTGACCATTTGAAAAAATTGTCTTCAATTT-AGACACTTTAATGGCTATTGGCAGCAAACCTGTA
325 GTGACCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
** ** *
4253416 AAATCTCAAATGCTCTTTAAGGGGGCATGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* *
4253481 TAAGGGCCAA-ATACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAGCACCCCCGATCGT
454 TAAGGGCCAAGA-ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGC-CCCCCGATCGC
* * *
4253545 CGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGCTCCGGCGACGATGCC
517 CGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-G-T-----GATGCTCCGGCGATGGTGCC
* *
4253610 CCGACAAAGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CCC--T
571 CCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCGA-AACCCCGGT
*
4253671 -CG----G----T---C------TG-A-TTCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCT
634 CCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * *
4253714 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCAAAAT-TGCAAGCCGG
699 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGACGG
*
4253778 GGATCGATCGGGTTCCCCTCTGCATGCTGCCGATCCTACGGTCGTAACCCTCGGTCTGGTCCAAT
764 GGATCGATCGGG-TCCCC-CT-C-TG-T---G-TGCT---GTCGTAACCCTCGGTCTGG-CCAAT
* **
4253843 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCAGGCGGA
816 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC---G--ACGA--GAAC--G-AGGCGGA
4253908 CGGGCGGGAC
871 CGGGC---AC
* *
4253918 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTA
1 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
4253983 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * * **
4254048 AACCTTCACGTGAAGTTTCATGGCAAAACCACTCGTTTTCTGTTTTTCATGATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
4254113 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCATTTTTGG-CCCAAACTTGGTAGACGTG
196 TTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTG
* *
4254177 ATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
** * *
4254242 GTCTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGAGTGGCAGCAAACCTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
4254307 AATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
4254372 AAGGGCCATGAACCAGCACCCATCGCACATCATGTGTGCACCCCCCCCCGTTCCCCCCGATCGCC
455 AAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG--CCCCCCGATCGCC
* * * *
4254437 TGAACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGC-CCTGGCGATGGTGCCCTGACGAAGAA
518 GGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCC-GGCGATGGTGCCCCGACGAAGAA
* *
4254501 AAATGTAGCACCAGGACATGCCCGAGCCCAGCATGTGCTGTCGAAACCCTCGGTCCGATCCGATC
582 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGAAACCC-CGGTCCGATCCGATC
*
4254566 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCA
645 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
4254631 CGAAGCGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCGACCGG
710 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGG
*
4254696 GTCCCCCTCTGTGTGCTGTCGTAACCCTTGGTCTGGCCTAATCTTAGACTGGGAATGAACTCCGT
775 GTCCCCCTCTGTGTGCTGTCGTAACCCTCGGTCTGGCC-AATCTTAGACTGGGAATGAACTCCGT
*
4254761 ATGCCTAAGCCAACCGACGA-AACGA-GCGGATGGGCAC
839 ATGCCTAAGCCAACCGACGAGAACGAGGCGGACGGGCAC
* * * * *
4254798 TACGTCGACCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGGAGGTGGGTTTGGGCA
1 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
4254863 CATATTCATATTTCTGCTTGCCAATTCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** * * *
4254928 AGCCTTCTTGTGTAGTTTCATGGGAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
* *
4254993 TT-CTGATTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
196 TTAC-GGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
4255057 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAACTGTACAAGATTTT
260 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
4255122 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
4255187 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * **
4255252 AAGGTCCAAGTACCAGCACCCAT--CACA-CA--T-----C-CCCCCTGGCCCCCCCGATCGCCG
455 AAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG-CCCCCCGATCGCCG
* ** *
4255306 GAACCCCAATGCAGCTAGTCAGGTTCTCCAGTGATGCTCCGACGATGGTG-CCCGACGAAGAAAA
519 GAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
** * * * * **
4255370 ATGCAGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACACTCAGTTCGGCCCGATCTT
584 ATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGAAAC-CCCGGTCCGATCCGATCTT
4255435 AGACTGGGAATGAACTT
647 AGACTGGGAATGAACTT
4255452 AATATGCCTA
Statistics
Matches: 2111, Mismatches: 226, Indels: 212
0.83 0.09 0.08
Matches are distributed among these distances:
867 82 0.04
868 55 0.03
869 8 0.00
870 1 0.00
875 1 0.00
877 2 0.00
878 4 0.00
879 10 0.00
880 490 0.23
881 5 0.00
882 1 0.00
883 9 0.00
884 2 0.00
885 4 0.00
886 1 0.00
887 82 0.04
888 77 0.04
889 11 0.01
890 446 0.21
891 52 0.02
892 9 0.00
893 2 0.00
894 2 0.00
895 59 0.03
896 3 0.00
898 3 0.00
899 5 0.00
901 1 0.00
902 3 0.00
903 282 0.13
904 18 0.01
905 205 0.10
906 80 0.04
907 19 0.01
908 1 0.00
909 2 0.00
910 1 0.00
912 4 0.00
913 3 0.00
914 66 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGCCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
GCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGAAACCCCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGGGTCCCC
CTCTGTGTGCTGTCGTAACCCTCGGTCTGGCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAGAACGAGGCGGACGGGCAC
Found at i:4256816 original size:26 final size:26
Alignment explanation
Indices: 4256787--4256836 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4256777 GGTCTGATCT
4256787 TAGACTGGGAATGAACTCCGTATGTG
1 TAGACTGGGAATGAACTCCGTATGTG
* *
4256813 TAGATTGGGAATTAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
4256837 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTG
Found at i:4257713 original size:26 final size:26
Alignment explanation
Indices: 4257677--4257729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4257667 CCAGTCTGAT
4257677 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
4257703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
4257729 C
1 C
4257730 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:4257846 original size:892 final size:890
Alignment explanation
Indices: 4256009--4258516 Score: 3502
Period size: 892 Copynumber: 2.8 Consensus size: 890
4255999 CACCCCCCCA
* * * * * * **
4256009 ACCGGATCCCCCTA-TGCGTGCTATCGATCCTACTGCCGCAACCTTC-GCTCCAGTCTGATCTTA
1 ACCGGGTCCCCC-ACTGCATGCTACCGATCCTACTGCCGCAACCCTCAGTTCGA-TCCAATCTTA
* ** * *
4256072 GACTGGGAATTTACTCCATATGCCTAAGCCAACCGATGAAATGAGCAGGCGAGCGGGTGTGCGGG
64 GACTGCGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC--G-G-GC--G-G-GCGGG
* * *
4256137 CACTACGCCGGCTAGAGAGA-TAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTA
121 CCCTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTA
* * *
4256201 GGCACATCTTCATATTTCTATGTGCCAATGCTATTTTTATGGGTTGTAAATTCATACAATGGTCC
185 GGCACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * **
4256266 CTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
250 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
4256331 CTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGAAGAT
315 CTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
4256396 GTGATCCTTGTATTTTTGTTCGCA-GCCATAAAAATATTCAGCTAAAATA-TCGATGTGTACAAG
379 GTGATCCTTGTATTTTTGTTGGCATG-CACAAAAATATTCAGCTAAAA-ACTCGAAGTGTACAAG
4256459 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
442 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
4256524 TATAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTTGGGGTTTGATGAGGGATAGGGGGCC
507 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
* * * *
4256589 AATTTAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATC
572 AATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCGATC
* * * **
4256654 GCCAAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAG
636 GTCAGAACCCCAATG-CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAG
* * * * * *
4256719 AAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCGTCTGTCCGGTCTGA
699 AAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGA
* * *
4256784 TCTTAGACTGGGAATGAACTCCGTATGTGTAGATTGGGAATTAACTCCGTATGCCTAAGTCAACC
764 TCTTAGACTGGGAATGAACTCCCTATGTGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* *
4256849 CACGAAACGGGCGTGCGGGCACGTAGCCGACCAGAGGGGCAGGATGCATAAGCCGGGGATCG
829 CACGAAACGAGCGTGCGGGCACGTAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCG
* * * * * *
4256911 ATCGGGTCCGCCTCTGCATGCTACCGATCCTACTGCCGCAACCCTC-GGTCTGATCCAATTTTAT
1 ACCGGGTCCCCCACTGCATGCTACCGATCCTACTGCCGCAACCCTCAGTTC-GATCCAATCTTAG
* * *
4256975 ACTGCGAATGAACTCCATATGCCTAAGCGAACCGAGGAAACGAGCGGGCGGGCGGGCCCTACACC
65 ACTGCGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCCTACGCC
* * *
4257040 GGCCAGAGAGACGACATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
130 GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTT
*
4257105 CATATTTTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
195 CATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
4257170 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
260 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* *
4257235 TTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTAT
325 TTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
4257300 ATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
390 ATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
4257364 TTAAAAAAAGTGTCCCCATTTCCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCA
455 TTGAAAAAAGTGTCCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
** *
4257429 AATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCA
519 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCA
* *
4257493 AAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCTGATCGTCAGAACCCCA
584 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GGCCCCCCGATCGTCAGAACCCCA
4257558 ATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATATGGCA
648 ATG-CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATATGGCA
4257623 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGG
711 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGG
* *
4257688 AATGAACTCCCTATGCT-TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCCCGAAACGAG
776 AATGAACTCCCTATG-TGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
4257752 CGTGTGGGCGC-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
840 CGTGCGGGCACGT-AGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCG
** * * *
4257803 ACCGGGTCCCCCACTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTTCGGTCCAATCTTAGA
1 ACCGGGTCCCCCACTGCATGCTACCGATCCTACTGCCGCAACCCTCAGTTCGATCCAATCTTAGA
* ** *
4257868 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGGCGGGCGGGCA
66 CTGCGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGC---C-
* *
4257933 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGC
123 CTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGC
*
4257998 ACGTCTTCATATTTTTGCCATGT--CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
188 ACATCTTCATATTTTT---ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
4258061 CTTAAGCCTTCATGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
250 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
4258126 CTTTTTACGGTTTGGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
315 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
4258191 TTATCCTTGTAGTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAACTGTACAAGATT
380 TGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
4258256 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACTGGCAGCAAACCTAT
445 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
*
4258321 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTT-ATTGAGGGATA-GGGG-CAA
510 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA-TGAGGGATAGGGGGCCAA
* *
4258383 TATAAGGGCCAAA-TACCAGCACCCTTCGCACATCATGTGCACACACCCCCGGCCCCCCCGATCG
574 TATAAGGG-CAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG-CCCCCCGATCG
* *
4258447 TC-GAAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAG
637 TCAG-AACCCCAATGC-GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GACGAAG
4258511 AAAAAT
699 AAAAAT
4258517 GCACTACCAG
Statistics
Matches: 1439, Mismatches: 137, Indels: 62
0.88 0.08 0.04
Matches are distributed among these distances:
891 9 0.01
892 464 0.32
893 111 0.08
894 208 0.14
895 4 0.00
896 10 0.01
898 2 0.00
899 7 0.00
900 192 0.13
901 248 0.17
902 180 0.13
903 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
ACCGGGTCCCCCACTGCATGCTACCGATCCTACTGCCGCAACCCTCAGTTCGATCCAATCTTAGA
CTGCGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCCTACGCCG
GCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTC
ATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGTCAGAACCCCAATG
CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATATGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGA
ACTCCCTATGTGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCACGTAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCG
Found at i:4258862 original size:14 final size:14
Alignment explanation
Indices: 4258843--4258871 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4258833 GGTGGCTTTA
4258843 GGAAGGATTTTTTT
1 GGAAGGATTTTTTT
4258857 GGAAGGATTTTTTT
1 GGAAGGATTTTTTT
4258871 G
1 G
4258872 CCCAAACTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GGAAGGATTTTTTT
Found at i:4260891 original size:26 final size:26
Alignment explanation
Indices: 4260862--4260940 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
4260852 GCTATCCAAT
4260862 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4260888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4260914 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4260940 C
1 C
4260941 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4262677 original size:26 final size:26
Alignment explanation
Indices: 4262641--4262693 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4262631 CTGGTCCGAT
*
4262641 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAACAAACTCTATATG
* * *
4262667 CTTAGATTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACAAACTCTATATG
4262693 C
1 C
4262694 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCTATATG
Found at i:4263574 original size:26 final size:26
Alignment explanation
Indices: 4263545--4263597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4263535 CCAGTCCGAT
4263545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4263571 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4263597 C
1 C
4263598 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4265174 original size:886 final size:889
Alignment explanation
Indices: 4260421--4265175 Score: 5762
Period size: 903 Copynumber: 5.3 Consensus size: 889
4260411 TGAAGTTTCG
* *
4260421 GGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
4260486 TTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGTAAAAGATTTTCTGACCATTTG
66 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
4260551 AAAAAAGTGTCCCCATTTCGGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTGAAATG
131 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * * *
4260616 CTCTTTAAGGGGGTGTGAGTTCTAGAGGTATGATAAGTGATAGAGGGCCAATATAAGGGCCAAGC
196 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGT
* *
4260681 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATG
* * *
4260746 CCACCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTG-CCCTGACGAAGAAAAATACGGCACC
324 CCGCCGGTCAGGTTCT--G-C--T-C-C-GGCGATGGTGTCCC-GACGAAGAAAAATGCGGCACC
* *
4260810 AGAACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTGCTATCCAATCTTAGACTGGGAA
380 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC---G-------ATC-----C-----A
* ** * *
4260875 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
425 -G---TCC-GAT-CTTAGACTGGGAATGAACTCAATATGCTTAGATTGGGAATGAACTCCGTATG
* * * * * * * * * *
4260940 CCTAAGTCAACCCACGAAATGAGCATGCTGGTGCTCAACCGGCCAGAGGGGTGGGATGTGTAAGT
484 CCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * *
4261005 CGA-GATTGGT-AGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGT-TCGGTC
549 CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGATCT-GGTC
* * * *
4261067 CGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGAAGAAACAAGCGGGCGGGCGGG
613 CGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGG
* * * * * * *
4261131 TGAGCACTACGCC-GCAAAGACAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
678 CGGGCACTACTCCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGG
* * * *
4261195 TTTAGGTACATCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTTTAAATTCATACAATG
742 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
4261260 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
807 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** **
4261325 GAAACTTTTTGGGGTTTG
872 AAAACTTTTTATGGTTCA
* * **
4261343 GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCC-ACTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
4261407 TTTGTT-CCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
66 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
4261471 AAAAAAGTGTCCCCATTTC-GAACATTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCTCAAAT
131 AAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
4261535 GCGCTTTAAGGGGG-GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATCAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* * *
4261599 TACTAGCACCCATCGCATATCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAA
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCCCCGATCGCCGGAACCCCAA
* * *** * *
4261664 TGCCACCGGTCAGGTTCTCCGATTATGC--TGGTGCCCCGACGAAGAAAAATACGGCACC-GACA
322 TGCCGCCGGTCAGGTTCT--GCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAG-CA
* * * * *
4261726 CATTCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCAGT-C---C-----C-----AT---
384 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
* *
4261774 CT---TA-G---ACA--GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGG
449 CTCAATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
* * *** *
4261830 GCGCTAAGTCGGCCAGAGATACGGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGC
514 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGC
* * ** * * * *
4261895 TGCTGATCCTATTGCTACAACCCTCGATCCT-GTCCGATCTTGGATTGGGAATGAACTCCGTATC
579 TGCTGATCCTACTACCGCAACCCTCGAT-CTGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
*
4261959 CCTAAGCCAACCAACGAAACGAGC-GA---GCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGA
643 CCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC-TCCGGCCAGAGAGACGGGA
** * *
4262019 T-CGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCC
707 TGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
*
4262083 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATG
772 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ***
4262148 GCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTATTTGCAGTTCA
837 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCA
* * * * * *
4262201 TGATTTTTTAAAATTTTTTCGAAAGGTGTTTTAGCCCCAAACATGGTAGACATGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
**
4262266 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCTCCATTTG
66 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
4262331 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
131 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
4262396 ATCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTA
196 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTA
*
4262461 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGC
261 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGC
* * ** **
4262526 CGTCGGTTAGGTTCTCCGGCTATGCTCTGGCGATGGT-TCCTCGACGAAGAAAAATGCGAAAAAA
325 CGCCGGTCAGGTTCT---GC--T-C-C-GGCGATGGTGTCC-CGACGAAGAAAAATGCG-GCACC
* *** *** * * **
4262590 AGC-CAGGAAGGAGAGTAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
380 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
* * * *
4262654 TAAACTCTATATGCTTAGATTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
445 TGAACTCAATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** *
4262719 ACGGGCGCTCAACCGGCTAGAGGGGCAGGATGCGAAAGTTGAGGATCGATCGGGTCCCCCTCTGT
510 ACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGC
* ** * **
4262784 GTGCTGCTGATCCTGCTGTCGCAACCCTCGATCTGATTTGATCTTAGACTAGGAATGAACTCCGT
575 GTGCTGCTGATCCTACTACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGT
* * * *
4262849 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGACAGGCGTGCACTACGCCGGCCAGAGAG
640 ATGCCTAAGCCAACCGACGAAACG-A---GCGGACGGGCGGGCGGGCACTACTCCGGCCAGAGAG
* * *
4262914 ACGGGATGCCCAAGCTGTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
701 ACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
*
4262979 CATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGT
766 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
4263044 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCG
831 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCA
* * *
4263103 GGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCACAACCTTGGAAGACGTGATCCTTGTAT
1 GGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
4263167 TTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
65 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
4263232 GAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
4263297 GCTCTTTAAGGGGGTGTGAATTCTTGAGCTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAG
* * * * *
4263362 TACCAGCAGCCATCGCACATCATGTGCGCAAACCCCCTCAGCCCCCCCGATCGTCGGAAACCCAA
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCCCCGATCGCCGGAACCCCAA
* *
4263427 TGCCGCGGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCCG-CGAAGAAAAATGCGGCA
322 TGCCGCCGGTCAGG-T-T----C--TGCTCCGGCGATGGTG-TCCCGACGAAGAAAAATGCGGCA
* *
4263491 CCAGCACATGCCCGAGCCCAGCACGTGTTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
378 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
** * *
4263556 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
443 AATGAACTCAATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * * **
4263621 GTGCGGGCACTTAGCAGGCCAGAGGGGTGGAATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCT
508 GTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCT
** ** * * *
4263686 GTATGCTGCCAATCCTGCTACCGTAACCCTCGATCTGGTCCCATCTTAGACTAGGAATGAACTCC
573 GCGTGCTGCTGATCCTACTACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCC
* * * *
4263751 GTATACCTAAGCCAACCGACAAAACGAGCAGGCCGACGAGCGAGCGGGCACTA-TACCGGCCAGA
638 GTATGCCTAAGCCAACCGACGAAACGAGC--G--GACGGGCGGGCGGGCACTACT-CCGGCCAGA
* * *
4263815 GAGACGGGATGCGCAA-CCGTGGGTCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTT
698 GAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
4263879 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCAAGTGA
763 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
4263944 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGCTCA
828 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCA
* * *
4264006 GGATTTCTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
4264071 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCGTTTG
66 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
4264136 AAAAAAGTGCCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
131 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
**
4264201 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGATAAGT
196 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGT
* * *
4264266 ACTAGCA-CCATTCGCACATCATGTGTGCACA-CCCCCGGCCCGCCGATCGCCGGAACCCCAATG
260 ACCAGCACCCA-TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
* * *
4264329 CTGCCGGTCAGGTTCT-C-CC-GCGATGGTGTCCCGACAAAGAAAAATGTGGCACCAGCACATGC
324 CCGCCGGTCAGGTTCTGCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * **
4264391 CCGAGCCCAGCATGTGCAGCCGCAACCCTTGATCCAGTTTGATCTTAGACTGGGAATGAACTCAA
389 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAA
* * * *
4264456 TATGCTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCT
454 TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
* * * *
4264521 CAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTACGTGCTG-TC
519 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-
* * * *
4264585 GATCCTACTACCGGAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
583 GATCCTACTACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* *
4264650 GCCAACCGACGAAATGAGCGGATGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCA
648 GCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCA
4264715 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
713 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
4264780 ATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
778 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
4264845 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTT-TCGGTTC-
843 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAT-GGTTCA
* * *
4264891 GAGACTTTTTCAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
1 G-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * * * *
4264956 TTTTGTTGG-AGTGCACAAAACAATTCATCTAAAAAATCGAAGTGTACAAGATATTGTGACAATT
65 TTTTTTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
** *
4265020 TGAAAAAAAAGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAA
129 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
**
4265085 TGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAA
194 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAA
* * *
4265150 ATACCATCACCCATCACACATCATGT
258 GTACCAGCACCCATCGCACATCATGT
4265176 ACGCCGGCCA
Statistics
Matches: 3343, Mismatches: 393, Indels: 230
0.84 0.10 0.06
Matches are distributed among these distances:
858 220 0.07
859 76 0.02
860 253 0.08
861 34 0.01
862 67 0.02
863 26 0.01
864 1 0.00
865 3 0.00
866 4 0.00
867 50 0.01
868 3 0.00
869 3 0.00
871 1 0.00
872 2 0.00
876 1 0.00
877 1 0.00
881 2 0.00
882 1 0.00
884 2 0.00
885 45 0.01
886 407 0.12
887 7 0.00
888 6 0.00
889 277 0.08
890 2 0.00
891 4 0.00
892 4 0.00
893 167 0.05
894 2 0.00
897 3 0.00
898 3 0.00
899 1 0.00
900 35 0.01
901 31 0.01
902 398 0.12
903 478 0.14
904 331 0.10
905 5 0.00
906 4 0.00
907 1 0.00
909 3 0.00
910 1 0.00
911 1 0.00
912 60 0.02
913 3 0.00
914 1 0.00
917 1 0.00
919 78 0.02
920 170 0.05
921 10 0.00
922 54 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC
GCCGGTCAGGTTCTGCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAATA
TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGAT
CCTACTACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCA
Found at i:4265627 original size:490 final size:488
Alignment explanation
Indices: 4264691--4265665 Score: 1551
Period size: 490 Copynumber: 2.0 Consensus size: 488
4264681 GGGCACTACT
4264691 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
*
4264756 TTCATATTTCTACATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
4264821 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTTC
131 TTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * ** *
4264886 GGTTCGAGACTTTTTCAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
196 GGTTCGAGACTTTTTAAAATTTTTTAGAAACCATTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * *
4264951 TGTATTTTTGTTGGAGTGCACAAAACAATTCATCTAAAAAATCGAAGTGTACAAGATATTGTGAC
261 TGTATTTTTGTTGCAGTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATATTGTGAC
*
4265016 AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCT
326 AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGCCTACTAGCAGCAAACCTGTAAAATCT
*
4265081 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGG
391 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATAAAGG
*
4265146 CCAAA-TACCATCACCCATCACACATCATGTACG
456 -CAAAGTACCAGCACCCATCACACATCATGTACG
* * *
4265179 CCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
**
4265244 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
4265309 TTCACGTTAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
131 TTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
4265374 GGTTTGGGA-TTTTTGAAAATTTTTTTAGAAATCCTTTTTTGGCCCCAAACTTGGTAGACATGAT
196 GGTTCGAGACTTTTT-AAAA-TTTTTTAGAAA-CCATTTTTGGCCCCAAACTTGGTAGACATGAT
* * *
4265438 CCTTGTATTTTTGTTGTCA-TGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
258 CCTTGTATTTTTGTTG-CAGTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATATTG
* ** *
4265502 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAA
322 TGACAATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGCCTACTAGCAGCAAACCTGTAAA
* *
4265567 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
387 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATA
*
4265632 AAGGCAAAGTACCAGCACCCATCGCACATCATGT
452 AAGGCAAAGTACCAGCACCCATCACACATCATGT
4265666 GCGCACACCC
Statistics
Matches: 445, Mismatches: 37, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
487 5 0.01
488 193 0.43
489 13 0.03
490 233 0.52
491 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (488 bp):
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCGAGACTTTTTAAAATTTTTTAGAAACCATTTTTGGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGCAGTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATATTGTGAC
AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGCCTACTAGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAATATAAAGG
CAAAGTACCAGCACCCATCACACATCATGTACG
Found at i:4265852 original size:26 final size:26
Alignment explanation
Indices: 4265823--4265875 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4265813 CCAGTCCGAT
4265823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4265849 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4265875 C
1 C
4265876 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4266645 original size:11 final size:11
Alignment explanation
Indices: 4266631--4266665 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
4266621 GTTCTCCGGT
4266631 GATGCTCCGAC
1 GATGCTCCGAC
*
4266642 GATGCTCCGGC
1 GATGCTCCGAC
4266653 GATGCTCCGAC
1 GATGCTCCGAC
4266664 GA
1 GA
4266666 CGGTGCCCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.17
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:4266649 original size:22 final size:22
Alignment explanation
Indices: 4266624--4266665 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
4266614 CGGTCAGGTT
*
4266624 CTCCGGTGATGCTCCGACGATG
1 CTCCGGCGATGCTCCGACGATG
4266646 CTCCGGCGATGCTCCGACGA
1 CTCCGGCGATGCTCCGACGA
4266666 CGGTGCCCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.36, G:0.31, T:0.19
Consensus pattern (22 bp):
CTCCGGCGATGCTCCGACGATG
Found at i:4267658 original size:26 final size:26
Alignment explanation
Indices: 4267622--4267674 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4267612 CCGGTCCGAT
*
4267622 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4267648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4267674 C
1 C
4267675 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4269917 original size:26 final size:26
Alignment explanation
Indices: 4269888--4269937 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4269878 GATCTGATCT
4269888 TAGACTGGGAATGAACTCCGTATGTG
1 TAGACTGGGAATGAACTCCGTATGTG
*
4269914 TAGACTGGGAATGAACTCTGTATG
1 TAGACTGGGAATGAACTCCGTATG
4269938 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTG
Found at i:4270128 original size:4 final size:4
Alignment explanation
Indices: 4270119--4270152 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
4270109 GAGAAAACGA
* *
4270119 GCGG GCGG GCGG GCGG GCAG GCGT GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
4270153 ACTACACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.03, C:0.26, G:0.68, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:4270849 original size:26 final size:26
Alignment explanation
Indices: 4270798--4270850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4270788 CCAGTCCGAT
*
4270798 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4270824 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4270850 C
1 C
4270851 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4271726 original size:26 final size:26
Alignment explanation
Indices: 4271688--4271740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4271678 TCGGTTCGAT
* *
4271688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4271714 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
4271740 C
1 C
4271741 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4273506 original size:26 final size:26
Alignment explanation
Indices: 4273470--4273522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4273460 CTGGTCTGAT
*
4273470 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4273496 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4273522 C
1 C
4273523 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4273971 original size:902 final size:899
Alignment explanation
Indices: 4269167--4279804 Score: 13459
Period size: 902 Copynumber: 11.8 Consensus size: 899
4269157 TCTAGTCTGA
** * * * * *
4269167 TCTTAGACTGGGAATTTACTCCATATGCCTAAGCCAACCGATGAAATGAGCAGGCGAGCGGGTGC
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GC
* * *
4269232 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGATGATAGGTGGG
64 GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
4269297 TTTAGGAACATCTTTATATTTCTAGGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
4269362 GTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * *
4269427 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGA
258 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * * *
4269492 AGATGTGATCCTTGTATTTTTGTTCGCATCCATAAAAATATTCACCTAAAATA-TCGATGTGTAC
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTAC
* *
4269556 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
4269621 ACCTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCGGGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
4269686 GCCAATTTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCC
* * * *
4269751 GATCGTCGAAACCCCAACGTCGCCGATCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC-AG
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGATGGTGCCCCGA-
* * * * * * * *
4269815 TGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCGAGCATGTGCTGCCGCAACCGTTGGTCCGA
645 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
*
4269880 TCTGATCTTAGACTGGGAATGAACTCCGTATG-TGTAGACTGGGAATGAACTCTGTATGCCTAAG
710 TCTGATCTTAGACTGGGAATGAACTCCGTATGCT-TAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
4269944 TCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGCCAGAGGGGAAGGATGCACAAGCCGGGGA
774 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * * * ** * *
4270009 TCGGTCAGGTCTGCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGATCCAA
839 TCGGTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
* * *
4270070 TTTTATACTGGGAATGAACTCCGTATGCCTAAGCGAACCGA-GAAAACGAGCGGGCGGGCGGGCG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGA--------GCGGGCG
* **
4270134 GGCAGGCGTGCGGGCGGGCACTACACCGGCCAGAGAGACGACATGCGCAAGCCGTGGATCGATAG
57 GGC--G-G-GC--GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* ** *
4270199 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTTGTACCAATGCCATTTTTATGGCTTGTA
115 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
*
4270264 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
180 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * *
4270329 TTTCACAATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGG
245 TTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
4270393 CCCCAAACTTGGTAGACGTGATCCCTATATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAA
310 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
4270457 CTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGC
375 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
4270522 TACTGCCAGCAAACCTGGAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGAT
440 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
4270586 GAGGGATAGGGGGCCACTATAAGGGCAAAGTACCAGCACCCATCGTACATCATGTGCGCACACCC
505 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCC
* * * * * * *
4270651 CCTGGCGCCCCTGATCGTCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGA
570 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGA
*** *
4270716 TGGTGCCCCGACGAAGAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
634 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** * * * *
4270781 CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTTCA
699 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** *
4270846 TATGCCTAAGTCAACCC-CGAAAACGAGCGTGCGAGCTTTCAGCCAGCCAGAGGGGCGGGATGCG
764 TATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** * * * * * *
4270910 CAAGCCGGGGATCGACCGGGTCCCCCACTGCGTGTTGCCGATCTTGCTACCGTAACGCTCAGT-T
828 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT
*
4270974 CGGTCCAA
893 -GGTCCAG
* *
4270982 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--
* *
4271047 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGA
64 GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4271112 TTTATGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
4271177 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
4271242 AAAACTTTTTGCGGTTCGGGATTGTTTAAGATCTTTTCAGAAAGATTTTTGGCCCCAAACTTGGT
258 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
4271307 AGACATTATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4271372 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACGGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4271437 CCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
4271502 CCAATATAAGGGCCAAGTACCAGCACCGATCGTACATCATGTGCGCACACCCCACGG-CCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCG
* * *
4271566 ATCGTTGAAACCCCATTGCCGCCGGTCAGGTTCTC--TGA--------CGATGGTGCCCCGACGA
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGATGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
4271621 AGAAAAATACGGCACCAGCACTTGCCCGACCCCGGCATGTGCTGTCGCAACCCTCGATC-GGT-T
648 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
* * *
4271684 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTTA
713 -GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
4271749 ACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGTGAGATGCGGAAGTCGAGGATCG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
4271814 GTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTAGTCTGGT-CAG
842 GTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
* * * * * *
4271871 ATCTGAGACTAGGAATGAACTCTGTACGCCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGCG
1 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
4271936 -GGCACTACGCCGACCATAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
4272000 TAGGCACATCTTCATATTTCTATGTGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
4272065 CCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCATTTTCTATTTTTCACGATTTTCTA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * * *
4272129 AACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTTGTAG
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * * *
4272194 ACATGATACTTTTATTTTTGTAGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTGCAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
4272259 ATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACTGGCAACAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
4272324 TGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
4272389 AATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTG-AGCACACCCCCCCGGCCCCCCCG
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA-CACA-CCCCCCGGCCCCCCCG
* * * * * * *
4272453 ATCATTGGAACCCTAATGTCGCCGGTTAGGTTCTCCA--A--------CAATGGTGCCCCGACGA
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGATGATGCTCCGGCGATGGTGCCCCGACGA
* * ** *
4272508 AGAAAAATGCGGCACCAGCACATG-CCTAGACCCAGCATGTGCTGCCACAACCCTCGGTCCAGTT
648 AGAAAAATGCGGCACCAGCACATGCCCGAG-CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
*
4272572 TGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCA
712 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * * * * *
4272637 ACACACGAAATAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGTGCATGCCGGGAATTG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
4272702 GTCGGGTCCCGCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGAT-CGG
842 GTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
** ** * *
4272759 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTGACTAATGAAATGA----GCGGGCGGGCG
1 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
4272820 -GGAACTACGTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
65 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
4272884 TAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
4272949 CCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * * * * *
4273014 AACTTTTTACGGTTCAGGATTTGTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGCAG
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
4273079 ACATGATCCTTTTATTTTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
4273144 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * **
4273209 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGTG
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
4273274 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA-ACCCCCCGGCCCCCCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGAT
* ** * **
4273338 CGCCAAAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATGCTTTGGCGATGGTGCCCCGACGAA
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCGATGATGCTCCGGCGATGGTGCCCCGACGAA
* * ** *
4273403 GAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTGCTGTTGTAACCCTCGGTCTGGTCTG
649 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
*
4273468 ATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
714 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** * *
4273533 CCACGAAACGAACGTACGGGCACTCAGTAGGCCAGAGGGACGGGATGTGCAAGCCGGGGATCGGT
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * ** * * *
4273598 CGGGTCCCCCTCTGCTTGCTGCCAATCTTG-TGGGCACAACCCTCGGTCTGGTCTAG
844 CGGGTCCCCCTCTGCTTGCTGCCGATCCTGCT-ACCGCAACCCTCAGTCTGGTCCAG
* *
4273654 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGC
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GC
* * ** *
4273719 GCGTGCAATACGTCGGCCAGAGAGACAAGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGG
64 GCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
4273784 TTTAGGCACATCTTCATATTTCTATGTGCCAATGTCATTTTTATGGGTTGTAAATTCATATAATG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
4273849 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
*** *
4273914 AAAACTTTTTATAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
258 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
4273979 AGACGTGATCCTTGTATTTTT-TTCGCATCCATAAAAAAATTCAGCTAAAAACTCGATGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4274043 AGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
4274108 CCTGTAAAATATCAAGTGCTCTTTAA-GGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
4274172 CCAATATAAGGGCCAAGTACCGGCACCAATCGCACATCATGTGCACAACCCCCCCCGG-CCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAC-ACACCCCCCGGCCCCCCC
* * * * * * *
4274236 TATCGCCGAAAGCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAT
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGATGGTGCCCCGAC
* *
4274301 GAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * *
4274366 TTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACCGAGAATGAACTCCGTATGCCTAAGTC
711 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
4274431 AACCCATGAAACGAGCGTACAGGTGCTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
4274496 GGTCGGGTCCCCCTCTGCATGCTGCTGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAG
841 GGTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
* * *
4274555 TCTT-GATTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGTGC
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GC
* * ** *
4274619 GCGTGCACTACGTCGCCCAGAGAGATAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGG
64 GCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4274684 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
4274749 GTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTCC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
4274814 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAACTTGGC
258 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
4274878 AGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4274943 AGATTTTGTGACCATTTG-AAAAAGTGT-CCCATTTCAGACACATTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * ** *
4275006 CTTGTAAAATCTCAAATGCTTTTTAAGGATGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
4275071 CCAATATAAGGGCTAAGTACTAGCACCCATCACACATCATGTGCGCACACCCTCCCCCCCCGACC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACA----CACCCCCCGGCC
* * ** *
4275136 CCCCCAATCTTCGGAACCCCAATGCCGCCTTTCAGGTTCTC--TG--G-T-----GATGGTGCCT
577 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGATGATGCTCCGGCGATGGTGCCC
* * * * * * *
4275191 CAACGAAGAAAAATACGGCACAAGCACATGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGATC
642 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
4275256 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
707 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
4275321 AGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGACGAG
772 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * * *** *
4275386 GATCGATCGGGTCCCCCTCCGCATGTTACTGATCCTACTGCCGTAACCCTCAGTCCAATCCAA
837 GATCGGTCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
* * * * * *
4275449 TCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGCAGACAGGCGC
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GC
* * * *
4275514 GCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATTGATAGGGTGGCAGGTGGG
64 GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
4275579 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAACG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
4275644 GTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTGCTATTTTTCATGATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* *
4275709 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTGGCCCCAAACTTGG
258 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGG
* *
4275773 TAGATGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-GACTAAAAACTCGAAGTGTA
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTA
* *
4275837 CAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACCTTAATGGCTACTGACAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* **
4275901 AACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*** * *
4275966 GGCCAATATAAGGTTGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CACC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-CGGCCCCC
** * *
4276030 CCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCG
580 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGA-TGATGCTCCGGCGATGGTGCCCCG
* * *
4276095 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCG
644 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
4276160 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAACGAATTTCGTATGCCTAAG
709 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
4276225 TCAACCCACGAAACGAGCGTGCAGGCGCTTAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGA
774 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * ** * * * * *
4276290 TAGGCCGGGTCCCCCTCT-ATGTCCTATCGATCCTGCTACCGTAACCCTGGATTC-GAT-CTG
839 TCGGTCGGGTCCCCCTCTGCT-TGCTGCCGATCCTGCTACCGCAACCCT-CAGTCTGGTCCAG
* * *
4276350 ATCTGAGACTGGGAATGAACTCCATATGTCTAAGCCAACCGACGAAACGA----GCGGGCGGGCG
1 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
** * * * * *
4276411 -GGCTTTTCGCCGGCCAGAGAGACGGGATGCGTAGGCCGTGGATTGATAGGGTGGTTGGTGGGTT
65 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
4276475 TAGGCACATGTTTATATTTCTGCGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGTT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
4276540 CCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCCA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* ** *
4276605 AACTTTTTGTGGTTCAAGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
4276670 ACGTGATCCTTGTTTTTTTGTTGGCATGCA-AAAAAAAGGTCAGCTAAAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAA
* * *
4276734 GATTTTGTGGCCATTTGAAAAAAATGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* ** * *
4276799 CTATAAAATCTCAAATGCTCTTTAAGGAAGTGCGAGTTCACGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * *
4276864 CAATATAAGGGCCAAGTGCTAGCACCCATCGCATATCATGTACGCACACCCCCCGGCCCCCTCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGA
* * * * ** **
4276929 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA-GCAATGCTCTGGCGATGGCACCCCGGGG
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGATG--ATGCTCCGGCGATGGTGCCCCGACG
* * * ** * *
4276993 TAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGTTGCCGTGACCCTCGATCCT-AT
647 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGT
** * * * *
4277057 CCAATCTTAGACTGGGAATGAACTCCATATCCTTAGACTGGGAATGAACTCCATATACCTAAGTC
711 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
4277122 AACCCATGAAACGATCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * ** * * * *
4277187 GATCGGGTCTCCCTCTG-TGTGCTATCGATCCTGCTGCCGTAACCCTCAAT-TCGGT-CTG
841 GGTCGGGTCCCCCTCTGCT-TGCTGCCGATCCTGCTACCGCAACCCTCAGTCT-GGTCCAG
* * * *
4277245 ATCTGAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGGTGAGCGGGCG
1 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * *
4277310 -GGCACTACACCGGCCAGAGAGACGGGATGCGTAGGCCGTGGATTGATAGGGTGGTTGGTGGGTT
65 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
4277374 TAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
4277439 CCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCCA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * *
4277504 AACTTTTTGCGGTTCGGGATTTTCTAAATTTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
4277569 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTT-AGCTAAAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAA
* * *
4277633 GATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4277698 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
**
4277763 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC-GCCCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGA
* * * * * * * *
4277827 TCGTCGAAACCCCAATACTGCCGGTCAGGTTCTCCAGTGATGTTTCGACGATGGTGCCCCGACAA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGA-TGATGCTCCGGCGATGGTGCCCCGACGA
* * * **
4277892 AGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGTTGTAGCAACCCTCGGTCTGGTTC
648 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-G---
4277957 GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
709 G----T---C------TG--------AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * ** *
4278022 GAATGAACTCTGTATGCCTAAGTCAACGCACAAAACGAGCGTGAAGGCGCTCAGCCGGCCAAAGG
752 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * ** *
4278087 GGCGGGATGCACAA-CTCGGAGATTGACCGGGTCCCCCTC--CATGTGCTGCCAATCCTGCTACC
817 GGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGC-T-TGCTGCCGATCCTGCTACC
* * *
4278149 GTAACCCTCAGTCCGGTCCAA
879 GCAACCCTCAGTCTGGTCCAG
* * * *
4278170 TCTTAGACTAGGTATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGTGGGCAGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGG
** * **
4278235 GCG-GGCACTATACCGGCCAGAGAGATGGGATATGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
62 GCGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** * * *
4278299 GTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTACGGCATGTAAATTCATAAAAT
127 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
4278364 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * * *
4278429 CCAAACATTTTACGGTTTGGGATTTTTCAAAATTTTTTCGAAAGGAGTTTTGGCCTCGAACTTGG
257 CAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
4278494 TAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
4278559 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
4278624 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
4278688 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCC
* * * *
4278753 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGAC
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGATGGTGCCCCGAC
* * * **
4278818 GAAGAAAAATGCGTCACCAGCACATGCTCGAGCCCAGCATGTGGTGTTGCAACCCTCGGTCTGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * * * *
4278883 CCGAGCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGATCTTCGTATGCCTAAGTC
711 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
4278948 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGCTGAGGATT
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * *
4279013 GACCGGGTCCCCCT-TAG-TGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTTGGTCC-G
841 GGTCGGGTCCCCCTCT-GCT-TGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
* *
4279071 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC-A-------AGCGGGC-
1 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * ** ** ** **
4279127 AGGCACTACGTCGGCTTGAGAGGGGGGATAAGCAAGCCGTGGATCGATAGGGTGGTAATTGGGTT
65 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
4279192 TAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
4279257 CCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * *
4279322 AACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
4279387 ACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
4279452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
4279517 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
4279582 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-CCCCCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGAT
* * * ** *
4279646 CATCGGAAGCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCTGCGATGGTGCCCCGACGAA
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGATGGTGCCCCGACGAA
* * ** * * * * *
4279711 GAAAAATGCGGCACCGGCACATGCCCGAGCCCAGAATGTGCTATCGTAACCCTCGATCCGATCTA
649 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
4279776 ATCTTAGACTGGGAATGAACTCCGTATGC
714 ATCTTAGACTGGGAATGAACTCCGTATGC
4279805 CTAAGTCAGC
Statistics
Matches: 8572, Mismatches: 1007, Indels: 325
0.87 0.10 0.03
Matches are distributed among these distances:
883 40 0.00
884 161 0.02
885 616 0.07
886 158 0.02
887 100 0.01
888 204 0.02
889 3 0.00
890 766 0.09
891 178 0.02
892 2 0.00
893 10 0.00
894 806 0.09
895 747 0.09
896 94 0.01
897 145 0.02
898 173 0.02
899 592 0.07
900 639 0.07
901 481 0.06
902 877 0.10
903 133 0.02
904 19 0.00
905 33 0.00
906 1 0.00
909 1 0.00
911 12 0.00
912 403 0.05
913 117 0.01
914 56 0.01
915 204 0.02
917 1 0.00
920 1 0.00
923 3 0.00
924 195 0.02
925 1 0.00
926 1 0.00
927 67 0.01
928 531 0.06
929 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGC
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGATGATGCTCCGGCGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
GGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCAG
Found at i:4274410 original size:26 final size:26
Alignment explanation
Indices: 4274371--4274423 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4274361 CTGGTTTGAT
* * *
4274371 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACCGAGAATGAACTCCGTATG
4274397 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
4274423 C
1 C
4274424 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:4275301 original size:26 final size:26
Alignment explanation
Indices: 4275265--4275317 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4275255 CTGGTCTGAT
4275265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4275291 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4275317 C
1 C
4275318 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4276196 original size:26 final size:26
Alignment explanation
Indices: 4276167--4276219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4276157 CCGATCTGAT
*
4276167 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
4276193 CTTAGACTGGGAACGAATTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
4276219 C
1 C
4276220 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:4277091 original size:26 final size:26
Alignment explanation
Indices: 4277062--4277112 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4277052 CCTATCCAAT
4277062 CTTAGACTGGGAATGAACTCCATATC
1 CTTAGACTGGGAATGAACTCCATATC
4277088 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
4277113 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATC
Found at i:4277996 original size:26 final size:26
Alignment explanation
Indices: 4277960--4278031 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
4277950 CTGGTTCGAT
*
4277960 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4277986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4278012 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
4278032 TGTATGCCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4278923 original size:26 final size:26
Alignment explanation
Indices: 4278887--4278940 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
4278877 TCTGGTCCGA
4278887 GCTTAGACTGGAAATGAACTTCGTAT
1 GCTTAGACTGGAAATGAACTTCGTAT
* *
4278913 GCTTAGACTGGGAATGATCTTCGTAT
1 GCTTAGACTGGAAATGAACTTCGTAT
4278939 GC
1 GC
4278941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (26 bp):
GCTTAGACTGGAAATGAACTTCGTAT
Found at i:4280911 original size:808 final size:811
Alignment explanation
Indices: 4279039--4281160 Score: 3368
Period size: 808 Copynumber: 2.6 Consensus size: 811
4279029 GTGTGCTGTC
* * ** *
4279039 GATCCTGCTACCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** ** **
4279104 GCCAACTGACG-AA--A-CAAGCGGGCAGGCACTACGTCGGCTTGAGAGGGGGGATAAGCAAGCC
66 GCCAACTGACGAAACGAGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
** * *
4279165 GTGGATCGATAGGGTGGTAATTGGGTTTAGG-TACATCTTCATATTTCTGCATGCCAATGCCATT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGAT-CATCTTCATATTTCTGCGTGCCAATGCCTTT
* * *
4279229 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACGTCAAGTTTCATGGCAAGACGA
* * * * * *
4279294 CTCGTTTTCTATTTTTCATGATTTT-TGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTT
260 TTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTC
* * * *
4279358 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAAA
324 GCAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAA
* *
4279423 TATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
389 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
4279488 GACCCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
4279553 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
4279618 ATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAAGCCTAATGCCGCCGGTCAGGTTCTCCGGC
583 ATGTGCGCACACCCCCCGACCCCCCGATCATCGGAAGCCCAATGCCGCCGATCAGGTTCTCC-GC
*
4279683 GATGCTCCTGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCGGCACATGCCCGAGCCCAGAAT
647 -A-G---C-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAAT
*
4279748 GTGCTATCGTAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
706 GTGCTATCGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
4279813 GCCCACAAAACGAGCATGCGGGTGCCCCTCTATATGCTGCT
771 GCCCACAAAACGAGCATGCGGGTGCCCCTCTATATGCTGCT
* * *
4279854 GATCCTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGAGTGGGAATGAACTTCGTATGCCTAA
1 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
4279919 GCCAACTGACAAAACGAGCGAA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
66 GCCAACTGACGAAACGAGC-AAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
4279983 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTCATATTTCTGCGTGCCAATGCCTT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-ATCATCTTCATATTTCTGCGTGCCAATGCCTT
* * *
4280047 TTTTATGGCTTGTAAACTCATACAATGTTCCCTCAAACCTTCACGTGAAGTTTCATGGGAAGACG
194 TTTTATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACGTCAAGTTTCATGGCAAGACG
4280112 ATTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTC
259 ATTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTC
*
4280177 GCAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCATAAAAC
324 GCAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAA-
4280242 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
4280307 GACACTTTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
4280372 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
4280437 ATGTGCGCACACCCCCCGACCCCCCGATCATCGGAAGCCCAATGCCGCCGATCAGGTTCT-C-C-
583 ATGTGCGCACACCCCCCGACCCCCCGATCATCGGAAGCCCAATGCCGCCGATCAGGTTCTCCGCA
* * * *
4280499 G-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGTCCAGCATGTGCTGT
648 GCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTAT
* * *
4280563 CGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAGCCCACA
713 CGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACA
* * *
4280628 AAACGAGCGTGCGGGTGCCCCTCTGTATGTTGCT
778 AAACGAGCATGCGGGTGCCCCTCTATATGCTGCT
*
4280662 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * *
4280727 GCCAACTGACGAAACGAGCAAGCGATCGGGCACTACGCCGGCCAGAGATATGGGATGCGCAAGCC
66 GCCAACTGACGAAACGAGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
4280792 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGATCATCTTCATATTTCTGCGTCCCAATGCCTTTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGATCATCTTCATATTTCTGCGTGCCAATGCCTTTT
*
4280857 TTATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACGTTAAGTTTCATGGCAAGACGAT
196 TTATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACGTCAAGTTTCATGGCAAGACGAT
* *
4280922 TCGTTTTCTATTTTTCACGATTTTCTAAACTTTTTACGGTTCGGGATGTGTTAAAATTTTTTCGC
261 TCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGC
* * *
4280987 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTCTTTGCATGCACATAAAAA
326 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACA-AAAAA
*
4281052 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
4281117 CACTTTAATGGGTACTGGCAGCAAACTTGTAAAATCTCAAATGC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
4281161 ACAAAAAAAA
Statistics
Matches: 1212, Mismatches: 83, Indels: 31
0.91 0.06 0.02
Matches are distributed among these distances:
807 3 0.00
808 616 0.51
809 3 0.00
813 1 0.00
815 67 0.06
816 3 0.00
818 2 0.00
819 513 0.42
820 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (811 bp):
GATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACTGACGAAACGAGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGATCATCTTCATATTTCTGCGTGCCAATGCCTTTT
TTATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACGTCAAGTTTCATGGCAAGACGAT
TCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGC
AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGACCCCCCGATCATCGGAAGCCCAATGCCGCCGATCAGGTTCTCCGCAGCG
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTATCGT
AACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAA
CGAGCATGCGGGTGCCCCTCTATATGCTGCT
Found at i:4281252 original size:119 final size:118
Alignment explanation
Indices: 4281039--4281279 Score: 428
Period size: 119 Copynumber: 2.0 Consensus size: 118
4281029 TTTTCTTTGC
*
4281039 ATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTG
1 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTG
* * *
4281104 TCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACTTGTAAAATCTCAA
66 TCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
4281157 ATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
1 ATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGT
4281222 GTCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
65 GTCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
4281276 ATGC
1 ATGC
4281280 TCTTTAAAGG
Statistics
Matches: 117, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
118 6 0.05
119 111 0.95
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (118 bp):
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTG
TCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
Found at i:4281556 original size:25 final size:26
Alignment explanation
Indices: 4281513--4281564 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
4281503 CCGGTCCGAT
4281513 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4281539 CTTAGACTG-GAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4281564 C
1 C
4281565 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4282450 original size:26 final size:26
Alignment explanation
Indices: 4282414--4282466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4282404 CCCATCCAAT
*
4282414 CTTAGAATGGGAATGAGCTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
4282440 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4282466 C
1 C
4282467 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4284878 original size:26 final size:25
Alignment explanation
Indices: 4284839--4284890 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
4284829 CCAGTCCGAT
*
4284839 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTC-GTATG
4284865 CTTAGACTGAGAATGAACTCGTATG
1 CTTAGACTGAGAATGAACTCGTATG
4284890 C
1 C
4284891 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGAGAATGAACTCGTATG
Found at i:4285772 original size:26 final size:26
Alignment explanation
Indices: 4285734--4285786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4285724 CTGATTCGAT
*
4285734 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4285760 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4285786 C
1 C
4285787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4286190 original size:890 final size:890
Alignment explanation
Indices: 4284358--4287924 Score: 4860
Period size: 890 Copynumber: 4.0 Consensus size: 890
4284348 GCCAATGCCA
* * *
4284358 TTTT-TATTTTTCACGATTTTTGAAACTTTTTA-TGGTTCTAGCTTTTTTAAAATTTTTTCAGAA
1 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACT-GTTCGAGATTTTTTAAAATTTTTTCGGAA
*
4284421 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATT
65 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
4284485 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTCAGAC
130 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAATGTCCCCA-TTTCAGAC
4284550 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
193 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * * *
4284615 TGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGAACCCATCGCACATCATG
258 CAAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
4284680 TGCGCACACCCCCCAGGCCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGGTG
323 TGCGCACACCCCCCAGG-TCCCCCGATT-CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
*
4284745 ATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
386 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
4284810 TGCTGTCGTAACCTTCGGTC-CAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
451 TGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
4284874 AGAATGAACTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
515 GGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* ** * *
4284939 GGTGGGATGTACAAGCCAGGGATCGGCTAGGTCCCCTTCTGCGTGCTGTCGATCCTGCTACTGCA
580 GGTGGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCA
* *
4285004 A--C-C--T-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAT
645 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
*
4285063 GAGCGGGCGGGCGGGCGACCGGGCACTACGCCGGCCAGAGAGACGGGATGTAG-AAGCCGTGGAT
710 GA-------GGCGGG-G--CGGGCACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCCGTGGAT
* * * * *
4285127 CGATAGGATGGTAGGTGTGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
764 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGG
* * *
4285192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
829 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
*
4285254 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAA
1 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGA-GATTTTTTAAAATTTTTTCGGAA
** **
4285318 GGAGTTTTGGCCAAAAACTTGGTAGACGTGATATTTGTATTTTTGTTGGCATGCACAAAACAATT
65 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
* * * * * *
4285383 CAGCAAAAAACTCGAAATGTACAGGATTTTGTGACCATTTTAAAAAATTGTCCCCATTTTAAACA
130 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACA
* * *
4285448 CTTTAATGGCTACTAGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCT-
194 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * *
4285512 AGAGCTTTGATGAGGGATAGGGGGATATTATATGGGCCAAGTTCCAGCACCCATCGCACATCATG
259 A-AGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * * **
4285577 TGCGCACACCCATC-GGTCCCCCGATATCCGTAACCCCAATGTCGCAGGTCAGGTTCTTTGATGA
323 TGCGCACACCCCCCAGGTCCCCCGAT-TCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
* * * *** * * * * *
4285641 TGCTCCGGCGATAGTCCCCCGGTAAAGAAAAATGCGACACCAGCAAATGCCCGAGCCCTGTAAGT
387 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
4285706 GCTGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTTGG
452 GCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
4285771 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
517 AATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGG
* * * * * *
4285836 GTGGGATGCACAAGCCGGGGATCGACCGGGCCCCCCTCTGCGTGCTGTTGATCTTGCTACCACAA
581 GTGGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAA
* *
4285901 CCCTCGGTCTGGTTTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATG
646 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
*
4285966 A-GC-GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
711 AGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
4286029 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
776 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCA
* *
4286094 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTG
841 TACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
* *
4286144 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTCGGAAG
1 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGGAAG
** * * *
4286209 GAGTTTTGGCCCCAAACTTGGTAGACACGATCCCTGT-TTTTATTTTGGCATGCACAAAAAAATT
66 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAACAATT
* *
4286273 CAGCTAAAAACCCGAAGTGTACAAGATTTTGTGATCA-TTGCAATAAAATGTCCCCATTTCAGAC
130 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AA-AAAATGTCCCCATTTCAGAC
*
4286337 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCT
193 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
4286402 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CTGTACATCAT
258 CAAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCAT
* * *
4286466 GTGCGCACA-CCCCCTGG-CGCCCCGATCGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCC-AT
322 GTGCGCACACCCCCCAGGTC-CCCCGAT-TCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* * * * *
4286528 TGATGCTCTGACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCTGAGGCTAGC
384 TGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * * *
4286592 ATGTGCTATCGTAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
448 ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
4286656 TGGGAATGAACTCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
513 TGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
* * * * * **
4286721 -----GGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCCAGCTGTCG
578 GGGGTGGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCG
* * * * * *
4286781 TAACCCTCAGTCCGGTCTGATCTTTGATTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAA
643 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
4286846 ATGAGTGGGCGGGTAGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATTGA
708 ATGA---GGC-GG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** *
4286910 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTA
767 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTT
4286975 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
832 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
* * *
4287034 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTATTCGAGATTTTTTAAAATTTTCTCGGAAG
1 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGGAAG
4287099 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
66 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
* * *
4287164 AGCTAAAAACTCGAAGTGGACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCGGACAC
131 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACAC
*
4287229 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCA
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * *
4287294 AGGTTTGATAAGGGATA-GGGG-CGAATATAAGGGCCAAGTACCAGTACCCATTGCACATCATGT
260 AGGTTTGATGAGGGATAGGGGGAC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
4287357 GCGCACACCCCCCCGACTCCCTCGA-TCGTCGGAACCCCAATGCCGCCGGTCAGGATCTCCGATG
324 GCGCACACCCCCCAG-GTCCCCCGATTC--CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
* * *
4287421 ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
386 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** *
4287486 TGCTGCCACAACCCTCGGTTTGGGCCGCTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
451 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
4287551 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGTCGCTCAACCGGCCAGAGG
516 GAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* ** * * * * ** * * *
4287616 GGCGGGATGCGTAAGTCAGGGATCGGTCGAGTCCCCATCTGCGTGCTACCAATCCTACTACCGTA
580 GGTGGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCA
*
4287681 ACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
645 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
* * * * * * * *
4287746 GAACGCGCGGGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGTAAGTCATGGATTGATACGGT
710 G-AGGCG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
4287811 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAAT
773 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAAT
*
4287876 TCATACAATGGTCCCTTAAGCCTTCACCTGAACTTTCATGGCAAGACGA
838 TCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGA
4287925 GTCCGTATGC
Statistics
Matches: 2360, Mismatches: 255, Indels: 113
0.87 0.09 0.04
Matches are distributed among these distances:
883 110 0.05
887 2 0.00
888 52 0.02
889 117 0.05
890 943 0.40
891 130 0.06
892 56 0.02
893 51 0.02
894 15 0.01
895 301 0.13
896 121 0.05
897 249 0.11
898 157 0.07
899 2 0.00
901 1 0.00
902 53 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCAGGTCCCCCGATTCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGG
ATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTC
GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGGCG
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
Found at i:4286659 original size:26 final size:25
Alignment explanation
Indices: 4286623--4286674 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
4286613 CCGGTCCGAT
4286623 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
4286649 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
4286674 C
1 C
4286675 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:4287551 original size:26 final size:26
Alignment explanation
Indices: 4287515--4287567 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4287505 TTGGGCCGCT
4287515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4287541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4287567 C
1 C
4287568 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4288079 original size:211 final size:208
Alignment explanation
Indices: 4287718--4288135 Score: 640
Period size: 211 Copynumber: 2.0 Consensus size: 208
4287708 GGGAATGAAC
* * **
4287718 TCCGTATGCCTAAGCCAACCGACGAAATGAACGCGCGGGCGGGCACTGCGTCGGCCAGAGAGACG
1 TCCGTATGCCTAAGCCAACCGACGAAATGAACGCGCAGGCGGGCACTACGTCCACCAGAGAGACG
* * * * *
4287783 GGATGCGTAAGTCATGGATTGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
66 GGATGCGCAAGCCATGGATCGATACGGTAGTAGGTGGGTTTAGGCACATCGTCATATTTCTACGT
*
4287848 GCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAACTTTC
131 GCCAATACCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAACTTTC
4287913 ATGGCAAGACGAG
196 ATGGCAAGACGAG
* * *
4287926 TCCGTATGCCTAAGCCAACCGATGAAATGAGTGGGCGGGCAGGCGGGCACTACG-CCACCAGAGA
1 TCCGTATGCCTAAGCCAACCGACGAAATGA----ACGCGCAGGCGGGCACTACGTCCACCAGAGA
* **
4287990 GACGGGATGCGCAAGCCGTGGATCGATTGGGTAGTAGGTGGGTTTAGGCACATCGTCATATTTCT
62 GACGGGATGCGCAAGCCATGGATCGATACGGTAGTAGGTGGGTTTAGGCACATCGTCATATTTCT
*
4288055 ACGTGCCAATACCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAC
127 ACGTGCCAATACCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAC
4288120 TTTCATGGCAAGACGA
192 TTTCATGGCAAGACGA
4288136 CTCGTCTTCT
Statistics
Matches: 189, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
208 29 0.15
211 144 0.76
212 16 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (208 bp):
TCCGTATGCCTAAGCCAACCGACGAAATGAACGCGCAGGCGGGCACTACGTCCACCAGAGAGACG
GGATGCGCAAGCCATGGATCGATACGGTAGTAGGTGGGTTTAGGCACATCGTCATATTTCTACGT
GCCAATACCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAACTTTC
ATGGCAAGACGAG
Found at i:4288324 original size:26 final size:26
Alignment explanation
Indices: 4288288--4288340 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4288278 CCGATCTGAT
4288288 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4288314 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4288340 C
1 C
4288341 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4290344 original size:873 final size:866
Alignment explanation
Indices: 4288314--4290977 Score: 3401
Period size: 873 Copynumber: 3.0 Consensus size: 866
4288304 ACTCCATATG
4288314 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-A-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
4288377 AGGCCAGAGGGGCGGGATGGGCAAGCCGAGGATCGGTCGGGTCCCCATCTGCGTGCTGCCAATCC
66 CGGCCAGA-GGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
4288442 TGCTGCCGTCAACCCTCAGTCTTGTCCAATCTTAGTCTGGGAATGAACTCCTTATGCCTAAGCCA
130 TGCTGCC-ACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
4288507 ACCGACGAAATGAGC-G-GGTGGGCGGGCGAGCACTAGGTCAGCCAGAGAGACGGGATGTGCAAG
194 ACCGACGAAACGAGCGGCGGTGGGCGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAAG
* *
4288570 CCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCACT-TTTCTACGTGCGAATGCCA
259 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCTACGTGCCAATGCCA
* * *
4288634 TTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTCCATGGCAAGAT
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* **
4288699 GACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTT-TAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
*
4288764 TGGAAGGAGTTTTGGCCCCAAACTCGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCA-AAA
451 TGGAA-GAGTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
4288827 AAATTTCAGTTAAAAACTCGAAGTGTAGAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAA-ATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * **
4288892 CATG-CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGAAGGTGTG
578 CA-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
4288956 ACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
642 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCAC
* *
4289021 ATCATGTGCGCACACCCCCCC-G---ATCG-T-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
707 ATCATGTGCGCACACCCCCCCGGCCCCTCGATGCGGAACCCCAATACCGTCGGTCAGGTTCTCCG
*
4289080 ACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
772 -CGATGCTCCGACGATGGTGCCC-GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA--
* * * *
4289145 ACATGCTGCCGCATCCCTCAGTCCGGTCCAATCTTAGAT-TGGAATGAACTCTGTAT
833 ACATG-T---G--T---T--G-CC-G--CAACCCTCGATCCGG--T---C-C-G-AT
* * * *
4289201 GCTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
4289266 CCGGCTAGAGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCTCCTCTGCATGCTATCGATCC
65 CCGGCCAGAGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
4289331 TGCTGTCGCAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
4289396 CAGACGAAACGAGCGTACGGGCGGGTGGGCGGGCACTAAATCGACCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCG-GC-GGTGGGCGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAA
* * * **
4289461 GCCATGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCA
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
4289526 TTTTTATAGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * * * *
4289591 AACTCGTTTTCTATTTTTCACAATTTTTACAACATTTTGCGGTTCGGGATTTTTTAAAATATTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTA-AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * ** *
4289656 GGATGCAGTCTGGGGACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
452 GGAAG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
4289721 AATCAGCTAAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAAGT-T-CCCA-TTC
516 AATCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTC
4289783 AGACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4289847 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGAACCCATCGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACAT
* *
4289912 CATGTGCGCACACCCCCCGCGGCCCCTCGATGGCCGGAACCCCAATACCGTTGGTTAGGTTCTCC
709 CATGTGCGCACACCCCCC-CGGCCCCTCGAT-G-CGGAACCCCAATACCGTCGGTCAGGTTCTCC
* * * *
4289977 AGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCGGCACATGCCTGAGCCCAA
771 -GCGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAA
4290042 CATGTGTTGCCGCAACCCTCGATCCGGTCCGAT
834 CATGTGTTGCCGCAACCCTCGATCCGGTCCGAT
*
4290075 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
4290140 CGGCCAGAGTGGCGGGATGCGCAAGCAG-GGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAG-GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
4290204 TGCTACCACAACCCTCGGTATGGTCCAATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4290269 CCGACCAAACGAGCGGGCAGGTGGGCGGACGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGC-GGC-GGTGGGCGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
4290334 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATATTCATATTTCTACATGCCAATGCCA
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
4290399 TTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * *
4290464 GACTCGCTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
4290529 CGGAAAGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAA
452 -GG-AAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4290594 AAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTC
515 AAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4290659 AGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
4290724 TTCTTGAGGTTTGATGAGGGAT-GGGGGCCAATATAAAGGCCAAGTAACAGCACCCATTGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACAT
* * * *
4290788 CATGTGCGCACACCCCCCCCCGGACCCC-CTGATCGTCGGAAACCCAATACCGCCAGACAGGTTC
709 CATGTGCGCACA--CCCCCCCGG-CCCCTC-GAT-G-CGGAACCCCAATACCGTCGGTCAGGTTC
* * ** *
4290852 TCCGGCGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGTTGCACCAGCACATGCCCGAGCC
768 TCC-GCGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* *** * * *
4290917 CAGCATGTGCAACCACAACCCTCGGTCCGATCCGAT
831 CAACATGTGTTGCCGCAACCCTCGATCCGGTCCGAT
4290953 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4290978 TCTTAGACAG
Statistics
Matches: 1553, Mismatches: 182, Indels: 92
0.85 0.10 0.05
Matches are distributed among these distances:
873 388 0.25
874 112 0.07
875 12 0.01
876 61 0.04
877 82 0.05
878 141 0.09
879 2 0.00
880 1 0.00
881 8 0.01
882 2 0.00
883 1 0.00
884 2 0.00
885 1 0.00
887 1 0.00
888 121 0.08
889 188 0.12
890 17 0.01
891 65 0.04
892 245 0.16
893 8 0.01
894 3 0.00
895 2 0.00
896 5 0.00
898 83 0.05
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (866 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGCGGTGGGCGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAAGCC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
TCGTTTTCTATTTTTCACGATTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAA
GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCTCGATGCGGAACCCCAATACCGTCGGTCAGGTTCTCCGCGATGCTCC
GACGATGGTGCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGTTGCCG
CAACCCTCGATCCGGTCCGAT
Found at i:4290981 original size:26 final size:25
Alignment explanation
Indices: 4290952--4291002 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
4290942 TCCGATCCGA
*
4290952 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACAGGGAATGAACT-CGTAT
4290978 TCTTAGACAGGGAATGAACTCGTAT
1 TCTTAGACAGGGAATGAACTCGTAT
4291003 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
TCTTAGACAGGGAATGAACTCGTAT
Found at i:4291723 original size:26 final size:26
Alignment explanation
Indices: 4291694--4291746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4291684 CCGATTCGAT
*
4291694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4291720 CTTAGCCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4291746 C
1 C
4291747 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4292453 original size:26 final size:26
Alignment explanation
Indices: 4292424--4292476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4292414 CCGATCCGAT
*
4292424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4292450 CTTAGCCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4292476 C
1 C
4292477 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4292609 original size:730 final size:728
Alignment explanation
Indices: 4290233--4292914 Score: 3861
Period size: 730 Copynumber: 3.6 Consensus size: 728
4290223 ATGGTCCAAT
* * * *
4290233 CTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCAGGTGGGCGGA
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGG
* *
4290298 CGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGT
* * * *
4290363 TTAGGCGCATATTCATATTTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
4290428 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGCTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAG
* * * *
4290493 AAACTTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACATGGT
257 AAACTTTTTGT-AGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
4290557 AGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACA
321 AAACGAGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * * *
4290622 AGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAA
385 AGATTTTGTGACCACTTAAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
4290687 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT-GGGGG
450 CCTGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGG
* * * *
4290751 CCAATATAAAGGCCAAGTAACAGCACCCATTGCACATCATGTGCGCACACCCCCCCCCGGACCCC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA--CCCCCCC-GACCCC
* * * * * * *
4290816 CTGATCGTCGGAAACCCAATACCGCCAGACAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCG
577 CCGATCGCCGGAACCCCAATGCCGCC-GTCAGGTTCGCC--CGA-----C-G--ATGGTGCCCCA
* *** * * *
4290881 GTGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCAACCACAACCCTCGGTCCG
631 GCGAAGAAAAATACAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
*
4290946 ATCCGATCTTAGACTGGGAATGAACTCCGTATT
696 ATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4290979 CTTAGACAGGGAATGAACT-CGTATGCCTAAGCCAACTGACGAAACGAGCAGGAGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG
* * * * *
4291043 CGGGCACTATG-CGGCCAGAGAGACGGGATGTGCAAGCCGTGAATCGATAGGGTGGTAGGTGGAT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGT
4291107 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
4291172 TCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAG
** * *
4291237 AAACTTTTTGTAGTTTAGGATTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
**
4291302 AACGAGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTTCAAACTCGAAGTGTACAAG
322 AACGAGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
4291367 ATTTTGTGACCACTTAAAAAAAATGTCCCCATTCCATACACTTTAATGGCTACTGGCAGCAAACC
387 ATTTTGTGACCACTTAAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACC
4291432 TGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCC
452 TGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCC
*
4291497 AATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGTACACCCCCCCGACCCCCCGAT
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGACCCCCCGAT
*
4291562 CGCCGGAACCCCAATGCCGCCGGTCAAGTTCCCCGACGATGCTCCGACGATGGTGCCCCAGCGAA
582 CGCCGGAACCCCAATGCCGCC-GTCAGGTT------C---GC-CCGACGATGGTGCCCCAGCGAA
* *
4291627 GAAAAATACAGCACCAGCACAAGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGTCCGATTCG
636 GAAAAATACAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCG
4291692 ATCTTAGACTGGGAATGAACTCCGTATG
701 ATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
4291720 CTTAGCCTGGGAATGAACTCCATATGCCTAAGTCAACCGACGAAACGAGCGTACGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
4291785 CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAT
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
**
4291850 GCACATCTTCATAGTTT-TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATA-TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
4291914 CTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAA
* * *
4291979 CTTTTTGTAGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAAAT
260 CTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAAC
**
4292044 GAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTCAAACTCGAAGTGTACAAGAT
325 GAGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
4292109 TTTGTGACCACTTAAAAAAAATGTCCCCATTCCATACACTTTAATGGCTACTAGCAGCAAACCTG
389 TTTGTGACCACTTAAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4292174 TAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAA
454 TAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAA
4292239 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGACCCCCCCGATC
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGA-CCCCCCGATC
4292304 GCCGGAACCCCAATGCCGCCGTTCAGGTTC-CCCGACGATGGTGCCCCAGCGAAGAAAAATACAG
583 GCCGGAACCCCAATGCCGCCG-TCAGGTTCGCCCGACGATGGTGCCCCAGCGAAGAAAAATACAG
* *
4292368 CACCAGCACAAGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
647 CACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTG
4292433 GGAATGAACTCCGTATG
712 GGAATGAACTCCGTATG
* * ** * *
4292450 CTTAGCCTGGGAATGAACTCCATATGCCTAAGTCAACCGACGAAATTAGCGTGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
4292515 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAT
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
*
4292580 GCACATCTTCATAGTTT-TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATA-TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
4292644 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGGAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAA
** * * * * * *
4292709 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-G-ACTAAACCTGGGTAGA
260 CTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA-CTTGGTAAA
* **
4292772 CGTGATCCTTGTATTTTTTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
324 CGAGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
4292837 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGGCAGCCAAACC
389 TTTGTGACCACTTAAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACT-GGCAG-CAAACC
4292902 TGTAAAATCTCAA
452 TGTAAAATCTCAA
4292915 TTGCTCCAAG
Statistics
Matches: 1780, Mismatches: 131, Indels: 66
0.90 0.07 0.03
Matches are distributed among these distances:
728 94 0.05
729 28 0.02
730 418 0.23
731 1 0.00
735 1 0.00
738 17 0.01
739 251 0.14
740 233 0.13
741 185 0.10
742 34 0.02
743 153 0.09
744 293 0.16
745 45 0.03
746 17 0.01
747 1 0.00
749 7 0.00
750 1 0.00
751 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (728 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAAC
TTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAACG
AGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCACTTAAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGACCCCCCGATCGCC
GGAACCCCAATGCCGCCGTCAGGTTCGCCCGACGATGGTGCCCCAGCGAAGAAAAATACAGCACC
AGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
TGAACTCCGTATG
Found at i:4294089 original size:26 final size:26
Alignment explanation
Indices: 4294060--4294112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4294050 CCAGTCCGAT
* *
4294060 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
4294086 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
4294112 C
1 C
4294113 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:4295668 original size:26 final size:26
Alignment explanation
Indices: 4295617--4295669 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4295607 CCGGTCCTAT
* * **
4295617 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATAGGGAATGAACACCATATG
4295643 CTTAGATAGGGAATGAACACCATATG
1 CTTAGATAGGGAATGAACACCATATG
4295669 C
1 C
4295670 CTCAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACACCATATG
Found at i:4296393 original size:26 final size:26
Alignment explanation
Indices: 4296357--4296409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4296347 CCGGTTCAAT
* *
4296357 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4296383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4296409 C
1 C
4296410 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4297250 original size:26 final size:26
Alignment explanation
Indices: 4297199--4297251 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4297189 CCGGTCCTAT
* * **
4297199 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATAGGGAATGAACACCATATG
4297225 CTTAGATAGGGAATGAACACCATATG
1 CTTAGATAGGGAATGAACACCATATG
4297251 C
1 C
4297252 CTCAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACACCATATG
Found at i:4297959 original size:26 final size:26
Alignment explanation
Indices: 4297930--4297982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4297920 CCGGTTTGAT
*
4297930 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4297956 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4297982 C
1 C
4297983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4298852 original size:26 final size:26
Alignment explanation
Indices: 4298823--4298875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4298813 CCGGTTTGAT
*
4298823 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4298849 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4298875 C
1 C
4298876 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4299765 original size:26 final size:26
Alignment explanation
Indices: 4299725--4299777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4299715 ACATTTCAAT
*
4299725 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
*
4299751 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
4299777 C
1 C
4299778 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:4300260 original size:902 final size:901
Alignment explanation
Indices: 4297225--4303333 Score: 8059
Period size: 893 Copynumber: 6.8 Consensus size: 901
4297215 ACTCTGTATG
* * * * *
4297225 CTTAGA-TAGGGAATGAACACCATATGCCTCAGTCAACCCACGAAACGAGC--G-GG-CGGGCGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
* * * * *
4297285 GCGGGCACTATGCCGGCCAGAGAA-ACAGGATGCGCATGCCATGGATCAATAGGGTGGTAGGTGG
65 GCGGGCACTACGCCGGCCAGA-AAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ***
4297349 GTCTAGACACATCTTCATATTTCTATTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
4297414 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTC
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* ** ** ** *
4297479 CGAAACTTTTTGCTATTTAGGATTTTTTAAAATTTTTAT-GCAAGGAGTTTTCACCCCAAACATG
259 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT-TCGCAAGGAGTTTTGGCCCCAAACTTG
4297543 GTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
4297607 CAAGATTTTATGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
4297672 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGACGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
4297737 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA----CAC--CCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCCCCCC
* ** * *
4297795 GATCGTCGGAACCCCAGTGCTACCGGTCAGGTTCTCCGGCGATGCTCCGGCGCTGGTGCCCTGAC
583 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * *
4297860 GAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTTCTGCAACCCTCGGTCCGGT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* * *
4297925 TTGATCTTAGACTGGGTATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
713 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
4297990 AACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATAAGCAAGTCGGGAATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCGGG-ATC
* *
4298055 GACCGGGTCCCCCT-TGTGTGCTGTCAATCCTGTTGCCGCT-ACCCT-GAGTCCGGTCCGAT
842 GACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCG-TAACCCTCG-GTCCGGTCCGAT
** * *
4298114 AATAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* *
4298179 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
4298244 TTAGGAACATCTTCATATTTCTGCATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4298309 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTCTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** ** ** *
4298374 AAACTTTTTGCTATTTAGGATTTTTTAAAATTTTTAT-GCAAGGAGTTTTCACCCCAAACATGGT
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT-TCGCAAGGAGTTTTGGCCCCAAACTTGGT
4298438 AGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4298502 AGATTTTATGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4298567 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGACGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4298632 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA----CAC--CCCCCCGA
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCCCCCCGA
* ** *
4298690 TCGTCGGAACCCCAGTGCTACCGGTCAGGTTCTCCGGCGATGCTCCGGCGCTGGTGCCCCGACGA
585 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * * *
4298755 AGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTTCTGCAACCCTCGGTCCGGTTT
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTTC
* *
4298820 GATCTTAGACTGGGTATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
4298885 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATAAGCAAGTCGGGAATCGA
780 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCGGG-ATCGA
* *
4298950 CCGGGTCCCCCT-TGTGTGCTGTCAATCCTGTTGCCGCT-ACCCT-GAGTCCGGTCCGAT
844 CCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCG-TAACCCTCG-GTCCGGTCCGAT
* * * *
4299007 CATAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
*
4299072 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
4299137 TTAGGAACATCTTCATATTTCTGCATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
4299202 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
4299267 AAACTTTTTGTGGTTCGGGA-TTTTTAAAACTTTTTTCGGAAGGAGTTTTGGTCCCAAACTTAGT
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGCAAGGAGTTTTGGCCCCAAACTTGGT
**
4299331 AGACGTGATCCTTGTA-TTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4299395 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
4299460 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4299525 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGTACACCCCCCCGGCACCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCCCGGC-CCCCC
* * ** *
4299590 GATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCC-AG
583 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-
* * * * * **
4299654 TGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTACAT
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
* * *
4299719 TTCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGT
712 TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * ** * * ** * * *
4299784 CAACCCGTGAAACGAGCGTACAGGCGCTCAACCGACCAGAGGGGCGGAATGCGTAAGCCAAGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTC-GGGAT
* * * * * ** *
4299849 CGACCGGGTCCCCCTCTGCGTGCTATCGATCCTACTGTCGTAACCTTCGGTTTGGTCCAAT
841 CGACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCCGGTCCGAT
4299910 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * *
4299975 CGGGCACTACACCGGCCAGAAAGACAGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
4300040 TTAGGCACATCTTCATATTTTTGCATGCCAATGGCATTTTT-TGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
4300104 TCCCTTAA-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
4300168 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGTCCCAAATTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
4300233 GATGTGATCTTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTCAAAAA-TCAAAGTGTACA
326 GACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACA
* *
4300296 AGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4300361 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCCA-G---G-T---GCATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
4300417 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGGGCACACCCCCCCGGCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCCCGGCCCCCCG
* ** ** * * * * *
4300482 GTCACCTAAACCCCAATGCCGTCGTTTAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACG
584 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
4300547 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACCTGTGCTACCATAACCCTTGGTCCGG-T
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTT
* ** * *
4300611 CTGATCTTAGACTGGGAATGAGCTTTGTATGCTTGGACTGGGAAGGAACTCCGTATGCCTAAGTC
714 C-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
4300676 AACCCACGAAACGA--------GCG-T--G-C-G-CA-A---GC--------C--G--GGGATCG
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCGGGATCG
* * * * * ** * * *
4300711 GCCGAGTCCTCTTCTGCGTGCTGTCAATCCTACTATCGTAACCCTCGATCTGGTCCAAT
843 ACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCCGGTCCGAT
* * * *
4300770 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACTGACGAAACAAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGC---
* * ** *
4300835 TGGGCGGGCACTACGCTGGCCAGAGAGATAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
63 -GGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * *
4300900 GGGTTTAGGCACATCTTCATATTTCTGTGTGACAATGCCATTTTTATGGCTTGCAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
4300965 ATGTTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
*** * * * **
4301030 TTTGAAACTTTTTATAGTTCGGTATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCAACAAACTT
257 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACTT
* * * * * * *
4301095 GGTAGACGTGGTCCTTGTATTTTTGTTGGTACGCACAAAAAAATTCAGTTAAAAACTCAAAGCGT
322 GGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
4301160 ACAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGC
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
4301225 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCAAGGTTTGATGAGGGATAGG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
4301290 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG-CACACCCCCGGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGG-CCCC
* * *
4301354 CCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
581 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* *
4301419 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCG
646 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * * *
4301484 G-TCTGATCTTAGATTGGGTATGAACTCCTTATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
711 GTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
4301548 GTCAACCCACGAAA-GAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCGAG
775 GTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCG-G
* ** * * * * ** * *
4301612 AATCGGTCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCAACCTTCACTCCGATCTGAT
838 GATCGACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCCGGTCCGAT
* * * * *
4301676 CATAGACTGGGAACGAACTCAGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGG-CAGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGGCGG
* * *
4301740 GCGGGCACTACGCCGACCA-AAGAGACGGGATGCGCAAACCGTGGATCGATAGGGCGGTAGGTGG
65 GCGGGCACTACGCCGGCCAGAA-AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* **
4301804 GTTTAGGAACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
4301869 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
4301934 TGAAAC-TTTTGTGGTTTGGGATTTTTTAAAAAATTTTT-GAAAGGAGTTTTGGCCCCAAACTTG
259 TGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACTTG
*
4301997 GTAGACGTGATCCTTGTA-TTTTATTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
4302061 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
4302126 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
4302191 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAC--CCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCC-CGGCCCC
* * * * *
4302254 CCGATCG-CAGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGATGCCCC
581 CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
** * * * * *
4302318 GGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTTGGTCC
645 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
* * * * ** *
4302383 GATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCTATATGTCTA
710 GGTTCGATCTTAGACTGGGAATG-AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
4302448 AGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAAAGGGGCGAGATGAGCAAGACGGG
774 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTC-GG
* * * *
4302513 GATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCAG-AACCCTCGATCCGGTCTGAT
838 GATCGACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTG-CCGTAACCCTCGGTCCGGTCCGAT
* * * * * *
4302577 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCTACCGATGAAATGAACGGGCCGACAAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CG--GA-C--G
* * * *
4302642 TGAGCGGGCGGGTTGGCACTACACCGGCCAAAAAGATGGGATGCGAAAGCCGTGGATCGATAGGG
60 -G-GCGGGC--G--GGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
4302707 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
119 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
4302772 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
184 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
4302837 TCATGATTTTTGAAACTTTTTGCGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
249 TCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCC
* * *
4302902 CTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT
314 CCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
** * *
4302967 CGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTG
379 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
4303032 CTAGCAGCAAACCTGT-AAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGA
444 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
** *
4303096 TCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC
509 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCC
* * * * *
4303161 GCCGGCCCCCCCGATCGCCGGAACCTCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGA
573 -CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
** * *** *
4303226 TGGTGCCCCGGTGAAGAAAAAT-AGG-ACACAGCACATGCCCGAGGTGAGCATGTGCTGTCGTAA
636 TGGTGCCCCGACGAAGAAAAATGCGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
4303289 CCCTCAGGGT--GGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
700 CCCTC--GGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
4303334 CTAAGCCAAC
Statistics
Matches: 4676, Mismatches: 429, Indels: 204
0.88 0.08 0.04
Matches are distributed among these distances:
860 113 0.02
863 1 0.00
864 98 0.02
865 29 0.01
866 140 0.03
867 110 0.02
868 15 0.00
869 1 0.00
872 1 0.00
873 3 0.00
874 11 0.00
875 186 0.04
876 52 0.01
877 2 0.00
879 1 0.00
882 1 0.00
883 6 0.00
884 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 42 0.01
890 4 0.00
891 176 0.04
892 94 0.02
893 1326 0.28
895 3 0.00
896 1 0.00
899 4 0.00
900 357 0.08
901 479 0.10
902 498 0.11
903 194 0.04
904 1 0.00
905 2 0.00
906 100 0.02
907 2 0.00
908 1 0.00
909 6 0.00
911 1 0.00
913 192 0.04
914 167 0.04
915 123 0.03
916 55 0.01
917 70 0.01
918 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
CGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTTCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATAAGCAAGTCGGGATCGACC
GGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCCGGTCCGAT
Found at i:4301527 original size:26 final size:26
Alignment explanation
Indices: 4301491--4301543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4301481 CCGGTCTGAT
* *
4301491 CTTAGATTGGGTATGAACTCCTTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4301517 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4301543 C
1 C
4301544 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4302443 original size:26 final size:27
Alignment explanation
Indices: 4302391--4302443 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
4302381 CCGATCCCAT
*
4302391 CTTAGACTGGGAATGAAACTCTGTATG
1 CTTAGACTGGGAATGAAACTCTATATG
4302418 CTTAGACTGGGAATG-AACTCTATATG
1 CTTAGACTGGGAATGAAACTCTATATG
4302444 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCTATATG
Found at i:4304027 original size:718 final size:723
Alignment explanation
Indices: 4302548--4304051 Score: 2068
Period size: 718 Copynumber: 2.1 Consensus size: 723
4302538 CTGTCGATCC
* * * *
4302548 TGCTGTCAG-AACCCTCGATCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCT
1 TGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
4302612 ACCGATGAAATGAACGGGCCGACAAGCGGGTGAGCGGGCGGGTTGGCACTACACCGGCCAAAAAG
65 ACCGACGAAATGAA-----CGACAA--GGGTGAGCGGGCGGGTTGGCACTACACCGGCCAAAAAG
*
4302677 ATGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
123 ACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
*
4302742 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
188 CGTGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** * **
4302807 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGCTCGAGATTT
253 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAACTCGAGATTT
* * *
4302872 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
318 TTTAAAATTTTTTCGAAAGGAGTTTTGGACCTAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* * * *
4302937 GGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATAATTTGAAAAAA
383 GGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACAATTTGAAAAAA
* * * *
4303002 GTGTCCCTATTTCAGACACTTTAATGGCTGCTAGCAGCAAACCTGTAAATCTCAAATGCTTTTTA
448 ATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAATCTCAAATGCTCTTTA
* * *
4303067 AGAGGGTGTGAGTTCTCGAGGTTTGATGATCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
513 AGAAGGTGTGAGTTCTCGACGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
4303132 CCCATCGTACATCATGTGCGCACACCCCCGCCGGCCCCCCCGATCGCCGGAACCTCAATGCCACC
578 CCCATCGCACATCATGTGCGCACACCCCCGCCGACCCCCCCGATCACCGAAACCTCAATGCCACC
* * *
4303197 GGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATAGGACACAGCACAT
643 GGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAAAAAAATAGGACACAACACAT
* * ***
4303262 GCCCGAGGTGAGCATG
708 ACCAGAGCCCAGCATG
* *
4303278 TGCTGTCGTAACCCTCAGGGT--GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGTCGCAACCCTC--GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
4303341 AACCGACGAAATG-A-G-C-A-GGTGGGCGGGC-GGTCTGGCACTACACCGGCCAGAAAGACGGT
64 AACCGACGAAATGAACGACAAGGGTGAGCGGGCGGGT-TGGCACTACACCGGCCAAAAAGACGGG
* *
4303400 ATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
128 ATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * * *
4303465 CAATCCCATTTTTATGGCTTTTAAATTCATCCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCTT
193 CAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
4303530 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAATTCG-GTATTTTTTT
258 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAACTCGAG-ATTTTTTA
*
4303594 AAATTTTTTCGAAAGGAGTTTTGGAACC-AAACTTGGTAGGCATGATCCTTGTATTTTCT-TTGG
322 AAATTTTTTCGAAAGGAGTTTTGG-ACCTAAACTTGGTAGACATGATCCTTGTATTTT-TGTTGG
** *
4303657 TGGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAAT
385 CAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACAATTTGAAAAAAAT
* * *
4303722 GTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAA
450 GTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAA
* * *
4303787 GAAGGTGTGAGTTCTTGACGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCAC
514 GAAGGTGTGAGTTCTCGACGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * **
4303852 CCTTCGCACATCATGTGCGCACA-CCCC-CCGACCCCTCCGATCACCGAAACC-CTAATGCCGTC
579 CCATCGCACATCATGTGCGCACACCCCCGCCGACCCCCCCGATCACCGAAACCTC-AATGCCACC
* * *
4303914 GGTCAAGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGGTGAAAAAAAATACGG-CACCAACAC
643 GGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAAAAAAATA-GGACA-CAACAC
* *
4303978 ATACCAGAGCCCTGTATG
706 ATACCAGAGCCCAGCATG
* * *
4303996 TGCTGTTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4304052 TTAGATTGGG
Statistics
Matches: 686, Mismatches: 75, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
716 4 0.01
717 80 0.12
718 430 0.63
719 101 0.15
721 1 0.00
722 1 0.00
723 1 0.00
729 2 0.00
730 64 0.09
732 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (723 bp):
TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAACGACAAGGGTGAGCGGGCGGGTTGGCACTACACCGGCCAAAAAGACGGGATG
CGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
TCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAACTCGAGATTTTTTAAAAT
TTTTTCGAAAGGAGTTTTGGACCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAGGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACAATTTGAAAAAAATGTCCCC
ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAATCTCAAATGCTCTTTAAGAAGGTG
TGAGTTCTCGACGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCGCCGACCCCCCCGATCACCGAAACCTCAATGCCACCGGTCAAGT
TCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAAAAAAATAGGACACAACACATACCAGAGC
CCAGCATG
Found at i:4304054 original size:26 final size:26
Alignment explanation
Indices: 4304025--4304077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4304015 CCAGTCCGAT
4304025 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
4304051 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4304077 C
1 C
4304078 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4304340 original size:159 final size:159
Alignment explanation
Indices: 4304051--4304414 Score: 505
Period size: 159 Copynumber: 2.3 Consensus size: 159
4304041 ACTCCATATG
* ** * * **
4304051 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGT
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGTACGGGCGCTCAAC
** * *
4304116 CAGCCAGAAAGGTGGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCC
66 CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGCGCTCTCGATCC
*
4304181 TACTACCACAACCCTCGGTTCGGTCTGAC
131 TACTACCACAACCCTCGGTTCGGTCCGAC
* * *
4304210 CTTAGATTGGGAATGAGCTCCGTATGCATAAGCCAACTGACGAAACAAGCGTGCGGGCGCTCAAC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGTACGGGCGCTCAAC
* * *
4304275 CGGCCAGAAGGGCAGGATGCACAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGCGCTACT-GATC
66 CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGCGCT-CTCGATC
* *
4304339 CTACTGCCACAACCCTCGGTTCGGTCCGAT
130 CTACTACCACAACCCTCGGTTCGGTCCGAC
* *
4304369 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAAATCGACGAAA
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAA
4304415 TGAGGGGGTG
Statistics
Matches: 179, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
159 171 0.96
160 8 0.04
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGTACGGGCGCTCAAC
CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGCGCTCTCGATCC
TACTACCACAACCCTCGGTTCGGTCCGAC
Found at i:4304696 original size:26 final size:26
Alignment explanation
Indices: 4304647--4304697 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4304637 CGGTCTGATC
**
4304647 TTAGATTGGGAATGAACTTTGTATGG
1 TTAGATTGGGAATGAACTCCGTATGG
4304673 TTAGATTGGGAATGAACTCCGTATG
1 TTAGATTGGGAATGAACTCCGTATG
4304698 CCCAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.35
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCGTATGG
Found at i:4305575 original size:26 final size:26
Alignment explanation
Indices: 4305537--4305589 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4305527 CTGGTTCGAT
*
4305537 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4305563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4305589 C
1 C
4305590 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4306330 original size:26 final size:26
Alignment explanation
Indices: 4306294--4306346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4306284 CCGGTCCGAT
*
4306294 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4306320 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4306346 C
1 C
4306347 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4306654 original size:26 final size:26
Alignment explanation
Indices: 4306625--4306677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4306615 CCGATTCGAT
4306625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4306651 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4306677 C
1 C
4306678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4308229 original size:706 final size:706
Alignment explanation
Indices: 4306874--4308260 Score: 2219
Period size: 706 Copynumber: 2.0 Consensus size: 706
4306864 TGGTGGGCGT
* * * * *
4306874 GCGGGCACTACGCCGATCAGAGAGACGGGTTGCGTAAGCCGTGGATCGATAGGGTGATAGGTTGG
1 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGG
*
4306939 TTTAGGCACAACTTCATATTTCTGCGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACAACTTCATATTTCTGCGTGCCAATGGCATTTTTATGGCTTATAAATTCATACAATG
*
4307004 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTT
* * *
4307069 GAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGAAAGGAGTTCTGGCCCTAAACTTGGT
196 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTTCTGGCCCTAAACTTGGT
*
4307134 AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAAA
261 AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAA
* * *
4307199 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGTAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
*
4307264 CCTGTAAAATCTCAAATACTCTTTAAGGGGGTGCGAGTTCTCGGGGTTGATGAGGGATAGAGGGC
391 CCTGTAAAATCTCAAATACTCTTTAAGGGGGTGCGAGTTCTCAGGGTTGATGAGGGATAGAGGGC
*
4307329 CAATATAAGGGCCAAGTACCAGCACTCTTCGCACATCATATGCGCACACCCCCCAGCCCCCCCGA
456 CAATATAAGGGCCAAGTACCAGCACTCTTCGCACATCATATGCGCACACCCCCCAGCACCCCCGA
* * * * *
4307394 TCACCGGAACCCCGATGCCGCCTGGACAGGTTCTCCGATGATGCTCCGACGATGGTAACCTGATG
521 TCACCGGAACCCCAATGCCACCTGGACAGGTTCTCCGACGATGCTCCGACGATGGTAACCCGACG
* *
4307459 AAGAAAAATGCGACACCAGCACATGCCGAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
586 AAGAAAAATGCGACACCAGCACATGCCGAAGCCCAGCATGTACTGTCGCAACCCTCGATCCGGTC
4307524 C-AGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATGAACGG
651 CGA-TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATGAACGG
* * *
4307580 GCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGG
* *
4307645 TTTAGGCACATCTTCATATTTCTGCTTGCCAAT-GCGATTTTTATGGCTTATAAATTCATACAAT
66 TTTAGGCACAACTTCATATTTCTGCGTGCCAATGGC-ATTTTTATGGCTTATAAATTCATACAAT
*
4307709 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCA-TGATTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTT
4307773 TTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTTCTGGCCCTAAACTTG
194 TTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTTCTGGCCCTAAACTTG
* *
4307838 GTAGATGTGATCCTTGTATTTTT-TTTGCTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
259 GTAGACGTGATCCTTGTATTTTTGTTGGC-GTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
4307902 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGC
323 AAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* * * *
4307967 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGCGAGTTCT-CAGGGTTGATGAGGGATAGA
* * *
4308032 GGGCCAATATAAGGGCCAAGTACCAGCACTCTTCGTACATCATGTGCGCACACCCCCCGGCACCC
452 GGGCCAATATAAGGGCCAAGTACCAGCACTCTTCGCACATCATATGCGCACACCCCCCAGCACCC
*** * **
4308097 CCGATCGTTGGAACCCCAATGCCACC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
517 CCGATCACCGGAACCCCAATGCCACCTGGACAGGTTCTCCGACGATGCTCCGACGATGGTAACCC
* * * *
4308161 GACGAAGAAAATTTCTACACCAGCACATGCCCG-AGCCCATCATGTACTGTCGCAACCCTCGATC
582 GACGAAGAAAAATGCGACACCAGCACATG-CCGAAGCCCAGCATGTACTGTCGCAACCCTCGATC
*
4308225 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
646 CGGTCCGATCTTAGACTGGGAATGAACTCCCTATGC
4308261 TTAGACTGGG
Statistics
Matches: 624, Mismatches: 51, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
705 7 0.01
706 514 0.82
707 103 0.17
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (706 bp):
GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGG
TTTAGGCACAACTTCATATTTCTGCGTGCCAATGGCATTTTTATGGCTTATAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTT
AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTTCTGGCCCTAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATACTCTTTAAGGGGGTGCGAGTTCTCAGGGTTGATGAGGGATAGAGGGC
CAATATAAGGGCCAAGTACCAGCACTCTTCGCACATCATATGCGCACACCCCCCAGCACCCCCGA
TCACCGGAACCCCAATGCCACCTGGACAGGTTCTCCGACGATGCTCCGACGATGGTAACCCGACG
AAGAAAAATGCGACACCAGCACATGCCGAAGCCCAGCATGTACTGTCGCAACCCTCGATCCGGTC
CGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATGAACGG
Found at i:4308263 original size:26 final size:26
Alignment explanation
Indices: 4308234--4308286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4308224 CCGGTCCGAT
4308234 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4308260 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4308286 C
1 C
4308287 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4310924 original size:26 final size:26
Alignment explanation
Indices: 4310888--4310940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4310878 ATAGTTTGAT
*
4310888 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4310914 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4310940 C
1 C
4310941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4311820 original size:26 final size:26
Alignment explanation
Indices: 4311791--4311843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4311781 CCGATCCGAT
*
4311791 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4311817 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4311843 C
1 C
4311844 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4312706 original size:26 final size:26
Alignment explanation
Indices: 4312670--4312722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4312660 CCAGTCTGAT
4312670 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4312696 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4312722 C
1 C
4312723 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.