Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 4 of 120
Found at i:316014 original size:26 final size:26
Alignment explanation
Indices: 315978--316030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
315968 GTTGACTTAG
*
315978 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
316004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
316030 G
1 G
316031 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:316898 original size:26 final size:26
Alignment explanation
Indices: 316868--316918 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
316858 GTTGACTTAG
316868 GCATACGAAGT-TCATTCCCAGTCTAA
1 GCATACGAA-TATCATTCCCAGTCTAA
*
316894 GCATACGGATATCATTCCCAGTCTA
1 GCATACGAATATCATTCCCAGTCTA
316919 CGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAATATCATTCCCAGTCTAA
Found at i:317055 original size:890 final size:890
Alignment explanation
Indices: 311335--322091 Score: 12925
Period size: 890 Copynumber: 12.1 Consensus size: 890
311325 CCACCCGGTC
* * *
311335 GCCCGCCCGCCTGCTTGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATC
1 GCCCGCCCG-C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * *
311400 AGACC-GAATCGAGGGTTACGGCAGCAGGATCGGTAGCACACATAGGTGGACCCGACCGATCCTC
64 GGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGG-GGACCCGATCGATCCCC
* * * * ** * * *
311464 GGCTTGCGGATCCCGCCCCTCTGGCCGACTGAGCGCCAACACGCTCATTTCGTTGGTTGACGTAG
127 GGCTTCCGCATCCTG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
311529 GCATTCGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
191 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * *
311594 CGAGGGTTGCTGCAGCACATGCCGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC-TCTGCTGAG
256 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGG
* ** ** * *
311658 GCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGGTAGCATTGGCGTTCCGGCGATCGGGGGG
320 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* *
311723 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGGGCTGGTTCTTGGCCCTTATATTGGCCCCCT
384 G-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
311788 ATCCCTCATCAAACCTCACA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
448 ATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
311852 TGCCAGTAGCCATTAAAGTGTCTTAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
512 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
311917 ACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAA
577 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAA
* * * * * *
311982 GTTTGGGCCCAAAACT-CTTTCAAAAAAATTTTAAAAAATCTCAAACCGAAAAAAGTTTCAAAAA
642 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
312046 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
707 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * ** *
312111 TATGAATTTACAAGCCATAGAAATTGAATTGGCACGCAGAAATATGAAGATGTGCATAAACCCAC
772 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
312176 CTACCGCCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCGTAGT
837 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
312230 GCCCACCCGTGTGCCCGCCCGCCCGCCGCTTGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCAT
1 G----CCC----GCCCG--CG--C-TCG--T-TT-CGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * ** * * **
312295 TCCCAGTCTAAGATCAGATCAGATTGAGGTTTGTGATAGTAGGATTGACAGCATGCAGAGGGGGA
49 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGA-GGGGA
* * * * * * * * *
312360 -CCTAGCCAATCCCCGGCTTGCGCATCCCGCTCCTCTGGTCAGTTGAGCGCCCGCACGTTCGTTT
113 CCCGA-TCGATCCCCGGCTTCCGCATCCTGC-CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * **
312424 CATGGGTTGACTTAGCCATACAGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCT
176 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * ** * *
312489 ATGATCAGACCGGAACGAAGGTTGCGGTAGCACATGCTAGGCTCAAGCAGGTGCTGGTGTCGCAT
241 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *** * * ** * *
312554 TTTTCTCCGTGGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTT
306 TTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
312619 CGATGATCGGGCGGGCCGGGGGGGTGTGCACGCATGATGTGCGAAGGGTGCTGGTACTTGGCCCT
371 CGACGATCGGG-GGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** * ** *
312684 TATATTTTCCCCCTATCCCTCATCAAAACCTCGAGAACTCAGTCTCCCTTAAAGAGCATTTGAGA
434 TATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
312749 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTTCAAATGGT
498 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGT
* *
312814 CACAAAATTTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
562 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
312879 GATCACGTTTACCAAGTTTGGGCCCAAAACT-CTTTCGAAAAAATTTTAAAAAATCTCGAACCG-
627 GATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
312942 AAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
692 AAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ***
313007 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAG
756 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
* * *
313072 ATGTACCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAC
821 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
313137 GTAGTGCCCGCCT
886 GTA------G--T
* ** *
313150 GCCCGCCCGCCTGCCCGCTCGTTTCATCTATTGGCTTAGGCATACGCAGTTCATTCCCAGTCTAA
1 GCCCG--C-CC-G--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * **
313215 GATTAGACC-GAACCAAGGGTTGCGGAAGAAAGATTGGCAGCACACAGAGGGGGACCCGGGCGAT
60 GATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGA-GGGGACCCGATCGAT
* * * * * * * *
313279 CCCCAGCTTGCGCATCTTGCCCCTTTAGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGAC
123 CCCCGGCTTCCGCATCCTG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
313344 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
187 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
313409 AGACTGATGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCC
252 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * ** * * *
313474 AGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
317 GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* *
313539 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCC
382 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
313604 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
447 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
313669 TGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
512 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
313734 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAA
577 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAA
* * * *
313799 GTTTGGGCCCAAAACT-CTTTCG-AAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAA
642 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
313862 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
707 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *** *
313927 TATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTACCTAAACCCAC
772 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* *
313992 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGT
837 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * * * *
314046 GCCCGCCTGCCCGCTCGTTTCATCTGTTGGATTAGGCATACGCAGTTCATTCCTAGTCTAAGATT
1 GCCCGCC--CGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * ** *
314111 AGACC-GAACCAAGGGTTGTGGAAGAAAGATCGACAGCACACAGAGGGGGACCCGGGCGATCCGC
64 GGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGA-GGGGACCCGATCGATCCCC
* * ** * * * *
314175 AGCTTGCGCATTTTGCCCCTTTAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
127 GGCTTCCGCATCCTG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
314240 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CCAGACT--GA-CGG---GTA-
191 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** *
314288 C---GG-T-----AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCCAGGG
256 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * ** * * *
314344 CACCATCACAGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGT
321 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-
* * *
314409 C-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCTCCTAT
385 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
314473 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTA-AGGTTTGCTGC
450 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * **
314537 CAGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATCATCACAAAATCTTGTACACT
515 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
314602 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTT
580 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTT
* * * *
314667 TCGGGCCAAAAATCCTGCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTC-AAAATC
645 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATC
* * * *
314731 GTGGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
314796 TGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGTTGTGCCTAAACCCACCT
774 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
314861 ACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * *
314913 GCCCGCCCGCCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCCCGCCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * *
314978 GGACCAGACCGAGGGTTGCGGCAGCAGGGTTGGTAGCACACAGAGGGGCACCCGGTCGATCCACA
64 GGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGG-ACCCGATCGATCCCCG
* * * *
315043 GCTTCCGCAT-CTCCCCTCTCTGGCTGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC-T--
128 GCTTCCGCATCCT-GCC-CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
315104 ---T--GG-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGACTGGAC
191 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * **
315146 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
256 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * * * *
315211 CACCATCGCTGGAGCATTATCGGAAAACCTGACGGGCAGCATTGGGGTTCCGATGATCGGGGGGT
321 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-
* * * * * *
315276 CGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTAGTTGGCTCTAATATCGGCCCTCTA
385 CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
315341 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
449 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
315406 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTATACAC
514 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
315471 TTCGAGTTTTTATCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-T
579 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGT
**
315534 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATC
644 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
315599 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
315664 TAAATTTACAA-CCATAAAAATGGCTTTGGCACCTAGAAATATGAAGATGTGCCTAAACCCACCT
774 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* *
315728 ACAACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
*
315780 GCCCTTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
1 G--C--CCGCCCG-C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
315845 GATCGAACCAGACTGAGGATTGCGGCAGTATGATCGACAGCACATAGAGGGGCAACCC-ATCGAT
60 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGG--ACCCGATCGAT
* ** * *
315909 CCTCGGCTTCCGCATCTCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGAC
123 CCCCGGCTTCCGCATC-CTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
315974 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
187 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
316039 GGACCGAGGGTTGCGGTAGCACATGATGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACC
252 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * * * *
316104 GAGGCGCAATCGCCGGAGCATCGTCC-GAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCAG
317 GGGGCACCATCGCCGGAGCATC-ACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
*
316168 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCC
380 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
316233 CCTATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTT
445 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
316298 GCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
510 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
316363 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATC
575 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAC
* * * * ** **
316428 AAGTTTGGTGCCAAAAATCCTTTCGAAAAAATTTAAAAAAAATCCAAAACAACAAAAAGTTTCAA
640 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAA
** * * *
316493 AAATTGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAATTTCACGTGAAGGCTTAATGGACCA
704 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
316558 CTGTATGAATTTAAAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAAATGTGCCTAAACC
769 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
* * *
316623 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGGCGTAGT
834 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
316680 GCCCGCCCG-G-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
1 GCCCGCCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
316743 ACTAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGTGACCCGACCGATCCCCGGCT
66 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGACCCGATCGATCCCCGGCT
* * * * *
316808 TGCGTATCCTGCCGTGTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
131 TCCGCATCCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
316873 CGAAGTTCATTCCCAGTCTAAGCATACGGA-TATCATTCCCAGTCTACGATCGGACCGGACCGAG
196 CGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * *
316937 GGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
260 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
* * * **
317002 ATCGCCGGAGCATCACCGGAGAACCTTACCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCCAG
325 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCGGG
* *
317067 GGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCT
389 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
317132 CATCAAACCTCAAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
454 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * *
317197 AGCCATTAAAGTGTCTTAAATGTGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTTGA
519 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
317262 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGG
584 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGG
* **
317327 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGTACCGCAAAAAGTTTCAAAAATTGTGAA
649 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* * *
317392 AAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
714 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * ***
317457 TTACAAGCCATAAAAATTTCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
779 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
317522 CCTATCGATCCACGACTTGCACAACCCGTCTCTCTGGCCGACGTAGT
844 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *** *
317569 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTAATTGGCTTAGGCATACGGAGTTCATTCCCAAT
1 --------GCCCGCCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** ** *
317634 CTAAGATCAGAAC-GAACCAAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGAGGGACCCGGT
56 CTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAG-GGGACCCGAT
* ** * *
317698 CGATCCCCGGCTTACGCATGCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
119 CGATCCCCGGCTTCCGCAT-CCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
317763 TGACTTAGGGATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
183 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
317828 GATCGGACCGAGGGTTGCGGCAGCCCATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTT
248 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
317893 CACCGGGGTACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGAT
313 CACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
** * *
317947 CGGGGGGGCCAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
378 C-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * * *
318012 CCGCTTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTCAGATTTTACAGG
442 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
318077 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
507 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
318142 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
572 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * **
318207 ACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTC
637 AACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
*
318271 AAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAA-GGAC
702 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
318334 CGTTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACATTGAAATATGAAGATGTGCCTAAA
767 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* * *
318399 CCCACCTACAACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTTTGGCCGGCGTAGT
832 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
*
318457 GCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
1 GCCCG--C-CC-G-C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
318522 GATCGAACCGGACCGAGGGTTGCGACAGTAGGATTGACAGCACACAGAGGGGCAACCGATCAATC
60 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGG-ACCCGATCGATC
* * * * * *
318587 CTCGGCTTCCGCAT-CTCGCCCCTCTGGCCAGCTGAGCGGCCGCACACTCGGTTCATGGGTTGAC
124 CCCGGCTTCCGCATCCT-G-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
318651 TTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT
187 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
318716 GGACCGAGGGTTGCGGCAGCAGATGTTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTGACC
252 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * *
318781 GGGGCACCATCACCGGAGCATCGTCC-GAGAACCTGACCGGCGGCATTAGGGTTCCGACGATAAG
317 GGGGCACCATCGCCGGAGCATC-ACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CG
* *
318845 GGGGGCCGGGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGC
380 GGGGG-C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
318910 CCCCTATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
443 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
318975 TTGCTACCAGTAGCCATTAAAGTGTCTGGAATGGGGACAATTTTTTTAAATGGTTACAAAATCTT
508 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
319040 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
573 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * ** **
319105 ACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCAAAACTACAAAAAGTTTCA
638 ACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
319170 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTATA-GGAC
703 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGAC
* *
319234 CACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAAA
767 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
319299 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCCGTCTCTCTGG-CGACGTAGTGCCT
832 CCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTCTGGCCGACGTA--G--T
* *
319362 GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAA
1 ----GCCCGCCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
319427 GATAGGACCAGACTGAGGGTTGAGGTAGCAGGATC-AGCAGCACGCAGAGGGTGACTCGATCGAT
60 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACACAGAGGG-GACCCGATCGAT
* * * * * *
319491 CCCTGGCTTGCGCATCCCGCCGTGTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
123 CCCCGGCTTCCGCATCCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
319556 TAGGCATACGGAGTTCACTCCTAGTCTAAGCATACAGA-TATCATTCACAGTCTACGATCGGACC
188 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACC
* ** * * *
319620 GAACCGAGGGTTGCGATAGCACATGCTGGGCTTGGACATGTGCTGGTGCCGCATTTTTCTTCGCC
252 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * *
319685 GAGGCACCATCGCCGGAGCATCACCGGAGAACCTTACCGGCGGCA-TGGGGTTTCGACGATCGGG
317 GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
** * *
319749 GGGC-CAGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCATTATATTGGCCCCC
382 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
319813 TATCCCTCATCAAACCTCAAGCACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGC
447 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * * *
319878 TGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGATCACAAAATATTCTAC
512 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
319943 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAAAAA
577 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAA
* *
320008 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGTACCGCAAAAAGTTTCAAAAA
642 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
** * * * *
320073 TTGTGAAAAAAACAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
707 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** ***
320138 TATGAATTTACAAGCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
772 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * * * *
320203 CTACCACCCTATCGATCCACGACTTGCACAACTCGTCTCTTTTGCTGGCATAGT
837 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
320257 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAAT
1 --------GCCCGCCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** *
320322 CTAAGAACAGA--ATGAACCAAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGAGGGACCCGA
56 CTAAGATCGGACCA-G-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAG-GGGACCCGA
** * * * * * *
320385 TCGATCCCCAACTTTCGCATCCCTCCCCTCTTGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGG
118 TCGATCCCCGGCTTCCGCAT-CCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
320450 TTGACTTAGGGATATGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
182 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
320515 GGATCGGACCGAGGATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
247 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
320580 TCACCGGGGCACCAT---C---G-----CCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGA
312 TCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* ** *
320634 TC-GTGGGCCAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
377 TCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
320698 CCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
442 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
320763 TTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCT
507 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
**
320828 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCT
572 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * ** * * ** *
320893 TCCAAGTTCGGGGACAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGAGTA
637 AACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * * *
320958 AAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAATGAAC
702 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *** * *
321023 CGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACATAAA
767 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* * * * * *
321088 CCCACCAACCACCCTATCGATCCACGACTTGCACATCCCATCTTTCTGGCCGACGTACT
832 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
*
321147 GCCCGCCCGTCCGCCTTCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGATCATTCC
1 GCCCG--C--CCG------CG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * **
321212 CAGTCTAAGATCAGACCAAACCGAGGGTTACGATAGTAGGATCGGTAGCACACAGAGGGTGACCC
52 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGG-GACCC
* * *
321277 GGTCGAT------C--CC-CA----G--CT-T-----G--GA--------ATGATCGTTTCGTGG
116 GATCGATCCCCGGCTTCCGCATCCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * * *
321311 GTCGACTTAGGCATACGGAATTCATTCCTAGTTTAAGCATACGAAGTTCATTCTCAGTCTAAGAT
181 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * *
321376 TAGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTC
246 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * * * * * * * * *
321441 TTTGCCTGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGTTTCTGGCG
311 TTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
321506 ACCGGGGGGGCCGGGTGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATAT
376 ATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
**
321571 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTAC
439 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* ** *
321635 AGGTTTGCTGCCAGCAGCTTTTAAAATGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAA
504 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
321699 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
568 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
321764 GTCTACCAAGTTTGGGGCTAAAACTCTTTCCGAAAGAATTTTAAAAAATCTCGAACCGCAAAAAG
633 GTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * * *
321829 TTTCGAAAATCATCAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAG
698 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
321894 GGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGC
763 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGC
*
321958 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT
827 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * *
322022 ACCGGCCCGCCCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGC
1 --------GCCCGCCCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
322087 CTAAG
56 CTAAG
322092 CATACGGAGT
Statistics
Matches: 8646, Mismatches: 976, Indels: 504
0.85 0.10 0.05
Matches are distributed among these distances:
845 2 0.00
846 1 0.00
847 1 0.00
848 1 0.00
850 2 0.00
851 6 0.00
853 2 0.00
854 3 0.00
857 2 0.00
858 2 0.00
859 2 0.00
861 3 0.00
862 140 0.02
865 143 0.02
866 236 0.03
867 552 0.06
868 133 0.02
869 144 0.02
870 91 0.01
871 195 0.02
872 11 0.00
873 32 0.00
874 1 0.00
875 353 0.04
876 107 0.01
877 2 0.00
878 2 0.00
879 8 0.00
880 8 0.00
881 1 0.00
882 13 0.00
883 12 0.00
884 268 0.03
885 4 0.00
886 4 0.00
887 1 0.00
888 24 0.00
889 313 0.04
890 998 0.12
891 84 0.01
892 566 0.07
893 10 0.00
894 95 0.01
895 45 0.01
896 209 0.02
897 428 0.05
898 112 0.01
899 699 0.08
900 360 0.04
901 88 0.01
902 41 0.00
903 192 0.02
904 405 0.05
905 228 0.03
906 94 0.01
907 67 0.01
908 5 0.00
909 308 0.04
910 362 0.04
911 93 0.01
912 315 0.04
913 2 0.00
914 2 0.00
915 2 0.00
916 8 0.00
918 1 0.00
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCCCGCCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGACCCGATCGATCCCCGGCT
TCCGCATCCTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
TCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
Found at i:321373 original size:26 final size:26
Alignment explanation
Indices: 321321--321373 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
321311 GTCGACTTAG
*
321321 GCATACGGAATTCATTCCTAGTTTAA
1 GCATACGGAATTCATTCCTAGTCTAA
321347 GCATAC-GAAGTTCATT-CTCAGTCTAA
1 GCATACGGAA-TTCATTCCT-AGTCTAA
321373 G
1 G
321374 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:322101 original size:26 final size:26
Alignment explanation
Indices: 322065--322117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
322055 GTTGACTTAG
*
322065 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
322091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
322117 G
1 G
322118 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:322966 original size:26 final size:26
Alignment explanation
Indices: 322930--322982 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
322920 CCGGTCCGAT
322930 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
322956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
322982 C
1 C
322983 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:323372 original size:10 final size:10
Alignment explanation
Indices: 323357--323392 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
323347 TTGATTTTCT
323357 ATTTTTGAAA
1 ATTTTTGAAA
323367 ATTTTTGAAA
1 ATTTTTGAAA
323377 A-TTTTGAAA
1 ATTTTTGAAA
323386 ATTTTTG
1 ATTTTTG
323393 CGGTTTGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (10 bp):
ATTTTTGAAA
Found at i:323381 original size:9 final size:9
Alignment explanation
Indices: 323359--323390 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
323349 GATTTTCTAT
323359 TTTTGAAAA
1 TTTTGAAAA
323368 TTTTTGAAAA
1 -TTTTGAAAA
323378 TTTTGAAAA
1 TTTTGAAAA
323387 TTTT
1 TTTT
323391 TGCGGTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (9 bp):
TTTTGAAAA
Found at i:324591 original size:26 final size:26
Alignment explanation
Indices: 324562--324617 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
324552 CTGGTCTGAT
*
324562 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
324588 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
324614 CTTA
1 CTTA
324618 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:325497 original size:26 final size:26
Alignment explanation
Indices: 325458--325510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
325448 CTGGTCTGAT
*
325458 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
325484 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
325510 C
1 C
325511 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:326384 original size:26 final size:26
Alignment explanation
Indices: 326349--326399 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
326339 CGGTCCGATA
326349 TTAGACTGGG-ATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
326374 TTAGATCTGGGAATGAACTCCGTATG
1 TTAGA-CTGGGAATGAACTCCGTATG
326400 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 5 0.21
26 5 0.21
27 14 0.58
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:329949 original size:26 final size:26
Alignment explanation
Indices: 329913--329964 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
329903 CAGTACGACA
*
329913 TTAGACCGGGAATGAACTTCGTATGC
1 TTAGACCGGGAATGAACTCCGTATGC
*
329939 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACCGGGAATGAACTCCGTATGC
329965 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACCGGGAATGAACTCCGTATGC
Found at i:330833 original size:26 final size:26
Alignment explanation
Indices: 330797--330849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
330787 CCGATCTGAT
*
330797 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
330823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
330849 C
1 C
330850 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:331732 original size:26 final size:26
Alignment explanation
Indices: 331696--331749 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
331686 GGTCCGATCA
*
331696 TAGACTAGGAATGAACTTCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* *
331722 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
331748 TA
1 TA
331750 AGTGAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:331936 original size:897 final size:893
Alignment explanation
Indices: 323737--332554 Score: 10402
Period size: 899 Copynumber: 9.9 Consensus size: 893
323727 CGGTCAGGTT
* * * *
323737 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGA-GGGCAGAA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * ** *
323801 TGCGTAACCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTACCAATATTCCTGCCACAACCCTCG
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * *
323866 GTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-GAGGAG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACG-G
* *
323930 GC-GG-GGGCGAGCACTACGCCGTCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
323993 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTCGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
324058 ATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
324123 TGATTTTTAAAACTTTTTGCTGTTCGGGATTTTTTTAAAATATTTT-GGAAGGAGTTTTGGCCCC
390 TGATTTTCAAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* *
324187 ACAC----TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATG-TAAAAACTC
454 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTC
* *
324247 GAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTAC
518 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
324312 TGGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAG
583 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
324377 GGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCC
648 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
324442 TGGCCCCACCAATCGTCAGAACCCCAA---------T---G--CT-CC---G--GAGATGGTGCC
713 -GGCCCC-CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATGCCGCGATGGTGCC
* *
324487 CCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
776 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
324552 CTGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGAGTGGGAATGAA
841 CTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAA
* * * * * * *
324605 CTCCGTATGCTTAAGTCAACCCACGAAATGAGCTTGCGGGTGCTCAGCCAGCCAGAGGGACAGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * ** * ** *
324670 TGCGCAAGCAGGGGATCGACCGGGTCCCCCCCTGTGTGCTATCGATCCTACTGCCGGAACCCTTG
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * * *
324735 GT-TCGGTCTAATCTTAGACTGGGAACGAACTCCATATGCCTAAGCCAACTGACGAATC-AA---
131 GTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGG
* * ** *
324795 GTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAGGAACAAGCCGTGGATCGATAGGCTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
324860 TAGGAGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAATTTTATGGCTCGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
324925 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
324990 CGATTTTCAAAACTTTTTACGGTTCGGGATTTGTTAAAATTTTTCCAGAAGGAGTTTTGGCTCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* *
325055 AACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGA
455 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
325120 AGTGTATAAGATTTTGTGATCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTG
520 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
325185 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGGG
585 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* ** *
325250 ATAGGGGGCCAATATTAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTTC
650 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--C
* ** * * *
325315 GGCCCCCCCATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTAGGGTGATGGT
713 GGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--CGATGC---CGCGATGGT
** * ** **
325380 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATTCTTGAGCCCAGCATGTGCTGTAGCAACCCTC
773 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * **
325445 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTATGAATGAA
838 GGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
* * * *
325501 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTCAGCCGGCCAGAGGGACGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * *
325566 TGTC-CAAGCCGAGGATCGGCCGGGTCCCCTTTTGCATGCTACCGATCCTGCTACCGCAACCCTC
66 TG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* * * ** * * * *
325630 AGTCCGGTC-CAGTCTTAGACTAAGAATGAACTCCTTATGCCTAAGCTAACCGACGAAACAAGCG
130 GGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACG
* *
325694 GGCGGGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGATGGGACGCGCAAGCCGTGGATCGATAG
194 GGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
325759 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAACGCCATTTTTGTGGCTTGTA
255 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* * * *
325824 AATTCAGACAAGGGTCTCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATT
320 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
325889 TTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
385 TTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** *
325954 AACCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
450 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
326019 CTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAACGGC
515 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
326084 TACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAATTCTCTAGGTTTAAT
580 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *** *
326149 GAGGGATAGGGGGCCAATATAAGGGCAAAATACCAGCACCCATCATGCATAATGTGCGCACA-CC
645 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * *
326213 CCCAGCCCCCCGATCATCGGAACCCCAATGTCATCGGTCAGGTTCT--C--TG--GTGATTGTGC
710 CCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATGCCGCGATGGTGC
* * * *
326272 CCCGACGAAGAAAAGTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTTGG
775 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
326337 TCCGGTCCGATATTAGACTGGG-ATGAACTCCGTATGCTTAGATCTGGGAATGAA
840 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA-CTGGGAATGAA
* * * *
326391 CTCCGTATGACTAAGTCAAACCCATGAAATGAGCGTGGCAGGCG-TCAGCCGGCCAGAGGGGCGT
1 CTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCG-
* * *
326455 GG-TGGCGCCAAGCCGGGGATCGGT-TGGTCCCCCTCTTACGTGCTGTCGATCCTGCTGGCCCAC
63 GGAT-GCG-CAAGCCGGGGATCGGTCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCT-G-CCAC
* * * *
326518 AACCCTTAGGTCTGGTCTGATCTTAGACTAGG-ATGGAACTTCGTATGCCTGAGCCCAACCCGAC
123 AACCC-TCGGTCTGGTCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAG-CCAA-CCGA-
* * * *
326582 CAAAATGAGCAAGCGGGCGTGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTG
183 C-AAA--A-CAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
***
326647 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
244 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
326712 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
309 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
326777 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGC
374 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-
* ** *
326841 AAGGAGTTTTTGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
438 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * **
326906 TTCAGCTAAAAACTGGAACTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGA
503 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
326971 CACTTTAATGGCTACTGGCAG-AAACCTGTAAAACCTCAAATGGTCTTTAAGTGGGTGTGAGTTC
568 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * ***
327035 TCAAGGTTTGATGAAGGATAGGGGGCCATTATAATGGCCAAGTACCAGCACCCATCATGCATCAT
633 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ***
327100 GTGCGCACACCCCCCGGCCCCCCAATCATCAGAACCCCAATGCCATTGGTCAGGTTCT--C---G
698 GTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATG
327160 --GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
763 CCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
** * * * * *
327223 CGCAACCCTCGGTCCAGTCCGATCTTATACTGGGAATGAACTCCATATGTTTAGACTGGGAGTGA
828 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGA
327288 A
893 A
* * * * * *
327289 CTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCAGTCGACCAGAGGGGTGGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** ** * * *
327354 TGCGCAAATCAAGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGAT-CTGGCTACCACAACCCTC
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTGCCACAACCCTC
* * * * * * * * *
327418 GATCCGATCCGATCTTAGATTGGGAAAGAACTCCGTATGCCTAAGCCACCCGAC----GAAACGA
130 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGG
* * * *
327479 GCGGGCGGGCGGGCACCATGTCGGCCAGAGAGACGGGATGCGCAAGGCGTGGATCGATAGGGTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * ***
327544 TAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATTATATTTTTATGGCTTGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
327609 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCGTTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
327674 TGATTTTCGAAAGTTTTTGTGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
327739 AACGTGGTAGA-GTTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAG
455 AACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
327803 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACT
519 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
327868 -GAAGCAAACCTGTGAAATCTCAAATGCTCTTTAA-GGGTTGTGAGTTCTCTAGGTTTAAT--GG
584 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
327929 GATAGCGGGCCAATATAAGGG-CAAGAATACCAGCA-CCATCACACATTCATGTTGCGCCACACC
649 GATAGGGGGCCAATATAAGGGCCAAG--TACCAGCACCCATCGCACA-TCATG-TGCG-CACACC
** * * * *
327992 CCCC-AACCCCC-ATCACCGGAACCCCAAT-CACGACCGGTCAGATTTTCCGGCAGAGGTGCCAC
709 CCCCGGCCCCCCGATCATCGGAACCCCAATGC-CG-CCGGTCAGGTTCTCC--C-GA--TGCCGC
* * * * *
328054 GATAGTGACGACACACAACGAAGAAAAATGCGGCA-CAGCAACATGCCTGGAGCCGAACA-GTG-
767 GATGGTG-C--C-C-CGACGAAGAAAAATGCGGCACCAGC-ACATGCC-CGAGCCCAGCATGTGC
* * * * * * *
328116 TG-C-C-A-------TC--G-CCAACCCT-CA-T---CA-G-A-TT-G-AT-CTT-GAGTGGAAA
825 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
328156 TGAA
890 TGAA
*** *
328160 CTCCGTATGCCTAAGTCAACCCACGGAAAACGAGC-T-CGGGCGCTCAATATGGCCAGAGAAGGC
1 CTCCGTATGCCTAAGTCAACCCAC-G-AAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAG-GGGC
* * * * **
328223 -GGATGCGCAAGTCGGGGATAGGTCGGGTCCCCTTATGC-T-CTGTTGATTCCTGCTTGCCACTT
62 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGC-TGCCAC--
* * * * *
328285 TACCCTCAGTATCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATAAA
123 AACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
** * * * * *
328350 ATGAGCGGGCGGGCGGACGGGCAGGCACTACGCTGGCCAAAGAGAC-GGATGTGCAAGCCGTGGA
187 ACAAACGGGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
328414 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGTCAATGCCATTTTTATG
248 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* ** *
328479 GCTTCTAAATTCATACAATCTTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
313 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
328544 TTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGGTTTTTTTAAATTTTTTCAGAAAGA
378 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * *
328609 -TTTTCGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAATTTCA
443 GTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
328673 GCTAAAAACTCAAAGTGTATATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
507 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
328738 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
572 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
328803 GGTTTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCACCACCCATCGCACATCATGTGC
637 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
328868 GCACACCGCCCCCCGACCCCCCCGATCATCAGAAACCCAATGCCGCGGGTCAGGTTCTCCGACGA
702 GCACA---CCCCCCG-GCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--CGA
** * * *
328933 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCTTGT
761 TG--CCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * * *
328998 GCTGTCGAAACCCCCAGTCTGGTCCGATCTTAGACTGGGACTGAACTCCGTATGCTTAAACGGGG
823 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
329063 AATGAA
888 AATGAA
* * * * * *
329069 CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGTCGGCCAGACGGGTGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** * * * * *** ** ** *
329134 TGTACAAGTCGGGGATTGATC-GGTCCCCCTCTGTGTGCTGTTTATCCTGCTATCGTAACCTTCG
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * *
329198 GTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAACCGACGAAAC-GAGGGG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGGG
* * * * *
329262 ACGGACAGGCGGGCACTACGCCGACCAAAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGG
196 -CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
329327 TAGGTGGGTTTAGGTACATTTTCATAGTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
329392 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
329457 AGATTTCCAAAACGTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * *
329522 AACTTGGTAGACGTGATCGTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCAA
455 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
329587 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTG
520 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * ** *
329652 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTGTCGACCTTTGATGAGGA
585 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*** * * *
329717 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGTGCACACCCCCTGC
650 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * **
329782 CCCCCCGATCATCGAAACCCCATTGTTGCCGGTCAGGTTCT-CCG--G--G-GATGGTGCCCCGA
715 CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATGCCGCGATGGTGCCCCGA
* * *
329841 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-TCA
780 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-G
* *
329905 GTACGA-CATTAGACCGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
844 GTCCGATC-TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
* * * * *
329955 CTCCGTATGCCTAAGTCAACCCACGAAACTAGAGTGCAGGTGCTCAACCGGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * *
330020 TGCGCAAGCCGGGGATCGGCCAAG-CCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTT
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCC-TCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* * * * *
330084 GGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGAC----GAAACGA
130 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGG
* *
330145 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGGTCGATAGGGTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
330210 TATGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTGTGGCTTGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
330275 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** * * * *
330340 CGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTCAAAATTTTTTCAGAACGAGTTTTGGTCCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * *
330405 AACTTTGTAAAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
455 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
** *
330470 AGTGTACAAGATTTTAAGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
520 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
330535 GCAGCAAACCTGTAAAATCTAAAATGCTCGTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
585 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
330600 ATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCACCGCATATCATATGCGCACACCCCCCCG
650 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* * * * * *
330665 GCCCCCCCGATCGTCGAAAACCCGATGCCACCGGTCAGGTTCT-CCG--G--G-GATGGTGCCTC
714 G-CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATGCCGCGATGGTGCCCC
* * * * *
330724 GAAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCTCAACCCTTGGTCC
778 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* *
330789 GATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
843 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
** * * *
330840 CTCCGTATGCCTAAGTCAACCCACGAAACGAATGTGCGAGCGTTCAGCCAGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
330905 TGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCATAACCTTCG
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * ** ***
330970 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGCGGG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGGG
* * ** * *
331035 CGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCAAAAACTGTGGATCGATAGGGTGGT
196 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
** * **
331100 AGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCATTGATATTTTTATGGCTTGTAAATTCA
261 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
331165 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTT-A
326 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT-TTCA
* * * *
331229 TGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTCCAAAAGGAGTTTTGGCCCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
331294 ATA-TTGGT-GACGTGTTTCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
455 A-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
331357 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGTTACT
519 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
331422 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
584 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * * *
331487 AATAGAGGGCCAATATAAGGGGCAAGTACTAGCACCCATCGCACATCATCTGCGCATACCCCCCG
649 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
** * *
331552 GCCCCCCGATCATCGGAACCTTAATACCGTCGGTCAGGTTCTCCGACGATGCACCAGCGATGGTG
714 GCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--CGATG--CC-GCGATGGTG
* * * * * *
331617 CCCCTACAAAGAAAAAAGCGACACCAGCACATGCTCGAGCCTC-GCATGTGCTGTCGCAACCCTC
774 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-CAGCATGTGCTGCCGCAACCCTC
* * * *
331681 GATCTGGTCCGATCATAGACTAGGAATGAACTTCATATGCTTAGACTGGGAATGAA
838 GGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
* * * * * *
331737 CTCCGTATGCTTAAGTGAACCCACGAAACGAGCGTGAGGGCACTCAGCCGGCCAGAGGGGTGGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * **
331802 TGCGCGAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCAACCGATCCTGCTGCCACAACCCTCG
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * ** * *
331867 GTATGATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACAAAACAAACGGG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGGG
* * *
331932 CGGGCGGGCGGGCACCACACCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
196 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
331997 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCA
261 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
332062 TATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTC-TATTTCTATTTTTCA
326 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT-TTTCTATTTTTCA
* * * * * * * * *
332126 CGATCTTCGAAAGTTTTTGCGATTTGGGATTTTTTTAAATTTTTTCAGAAGAATTTTTGGCCCCA
390 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * *
332191 AACGTGGTGGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTTAGCTAAAAACTCGA
455 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
332256 AGTGTACAAGATTTTGTGAACATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
520 AGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
332321 GGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGG
584 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
332386 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCAG
649 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* ** * * * *
332451 CCCCCCCGATTGTCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGATGATGCTCCGGCGATTGTG
714 GCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--CGATG--CC-GCGATGGTG
* * *
332516 CCCCGACGAAGAAATATGCGAG-ACCAGTACAAGCCCGAG
774 CCCCGACGAAGAAAAATGCG-GCACCAGCACATGCCCGAG
332555 AGATGGACGG
Statistics
Matches: 6805, Mismatches: 933, Indels: 393
0.84 0.11 0.05
Matches are distributed among these distances:
865 1 0.00
866 15 0.00
867 221 0.03
868 52 0.01
869 105 0.02
870 6 0.00
871 290 0.04
872 54 0.01
873 13 0.00
874 7 0.00
875 43 0.01
876 1 0.00
877 5 0.00
878 29 0.00
879 34 0.00
880 44 0.01
881 398 0.06
882 328 0.05
883 543 0.08
884 42 0.01
885 322 0.05
886 259 0.04
887 95 0.01
888 248 0.04
889 275 0.04
890 116 0.02
891 43 0.01
892 59 0.01
893 42 0.01
894 7 0.00
895 40 0.01
896 333 0.05
897 610 0.09
898 316 0.05
899 654 0.10
900 37 0.01
901 468 0.07
902 7 0.00
903 24 0.00
904 499 0.07
905 9 0.00
906 1 0.00
907 23 0.00
908 39 0.01
909 48 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAACGGG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATGCCGCGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
Found at i:333240 original size:26 final size:26
Alignment explanation
Indices: 333211--333263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
333201 TTAATCCGAT
*
333211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
333237 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
333263 C
1 C
333264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:335915 original size:26 final size:26
Alignment explanation
Indices: 335865--335920 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
335855 TCGATTCGAT
* *
335865 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATC
**
335891 CTTAGACTGGGAATGAACTTTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
335917 CTTA
1 CTTA
335921 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:336782 original size:26 final size:26
Alignment explanation
Indices: 336753--336805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
336743 CTGATCTAAT
*
336753 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
336779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
336805 C
1 C
336806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:336994 original size:888 final size:887
Alignment explanation
Indices: 332573--338401 Score: 6847
Period size: 863 Copynumber: 6.6 Consensus size: 887
332563 GGACGGGCAT
* *
332573 GCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** ** *
332638 GGTGCATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
332703 CTTAAGTCGTCACGTAAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
332768 CATTTTACGATTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTATAC
196 CTTTTTGCGGTTC-GGATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * *
332832 GTGATCCTTGTTTTTTTGTTAGCATGCACAAAAAACTTCAGCTAAAAATTTGAACTGTACAAGAT
259 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
332897 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
324 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
332962 TAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATAGGGGGCCA
389 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCA
* * *
333026 ATATAAGGGCCAAGCACCAGCACCTATCGCA-A--A--T-----CA-TCCCCGGCCCTCCCGATC
453 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATC
* * * * * * ** ***
333080 ACTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAG
517 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGA-GCTCTGGTGATGGTGCCCCGGTGAAG
* * * * *
333145 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGGTTTAATCCGA
581 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGATCTGATCTGA
* *
333210 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
646 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * * * * * *
333275 AACGAAACGAGCGTACGAGCGTTCAGCCGACCAGAGGGGCGAGATGTGTAAGTCGAGGATCGGTC
711 CACGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCC
* * * * * * * *
333340 GGGTCCCTCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCTGGTCGGATCTTCGACTG
776 GGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTGGTCTGATCTTAGACTA
*
333405 GGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGTAGGCGGGCGGGCGG
841 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--A-----GCGGGCGG
** * * * * *
333460 GCACTACATCGGCAAGAGAGACGAGTTGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGAGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
333525 GGCACATCTTCATCTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
333590 CTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
333655 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
196 CTTTTTGCGGTTC-GGATTTTTTAAAA-TTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
333720 GTGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG-ACAAGAT
259 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
333784 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGGAAACCTG
324 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
333849 TAAAATCTCAAATGTTCTTTAAGAGAGTGTGAGTTGTCGAGCTTTGATGAGGGATAGGGGGCCAA
389 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *** * *
333914 TATAAGGGCCAAGTGCCAACACCCATCATGCATCATGTGCGCACACCCCCCTGCCCCCCGATCGT
454 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
* *** *
333979 CGGAACGCCAATGTTACCGGTCAGGTTC-TC--C--G----GG-GATGGTGCCCCGGCGAAGAAA
519 CGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGAGCTCTGGTGATGGTGCCCCGGTGAAGAAA
** *
334034 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-TG----G---T
584 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGATCTGATCTGATCT
* * *
334087 T---C-------G-A-TCCG-AT-CTTGGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCAT
649 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
334138 GAAACTAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCAGG
714 GAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGG
* * * *
334203 TCCCCCTCTGCGTGCTGTCGATCTTGCTGCCG-CAACCCTTGGTCCGGTCTGATCTTAGACTAGG
779 TCCCCCTCTGCGTGCTATCGATCCTGCTG-CGACAACCCTCGGTCTGGTCTGATCTTAGACTAGG
* * *
334267 AATGAACTCCGTATGCCTAAGCCCACTGACGAAACGAGCGGGCGGGCG
843 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC--G-G
* * * **
334315 CGCACTACGCCGGCTAGAGAAACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTACATGGGTTT
1 -GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
334380 TGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTC
65 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
334445 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
334510 ACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCAGAGGGAGTTTTGGTCCCAAACTTTGTAGA
195 ACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
334575 GGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAACCTCGAAGTGTACAAGA
258 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** * * *
334640 TTTTAAGACCATTTAAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
323 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
334705 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCA
388 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
334770 ATATAAGGGCCAAGTACTAGCACTCACCGCATATCATGTGTGCACACCCCCCCCGGCCCCTCCCG
453 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-CCC-CCCG
* * * * **
334835 ATCGCCGAAAACCCGATACCGCCGGTCAGGTTC-TC--C--G----GG-GATGGTGCCCCGACGA
514 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGAGCTCTGGTGATGGTGCCCCGGTGA
* * * * * *
334890 AGGAAAATTGTGGCACC-GCACATGCCCGAGCCCAGCATGTGCTGCCCGTAACCCTCGGTCCGA-
579 A-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCG-CCGCAACCCTCGATCTGAT
* * * * *
334953 CCGATCTTAGACTGGGAA-GAACTTCATATGCTTAGAATTGGAATGAACTCCGT-TGCCTAAGTC
642 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * **
335016 AACCCACGAACCGAACGTGCGCGGCACT-AGCCAGCCAGAGGGGCGGGGATGCACAAGCCGGGGA
707 AACCCACGAAACGAGTGTGCG-GGCACTCAGCCGGCCAGAGGGGC-GGGATGCGTAAGCCGGGGA
** * * * * * **
335080 TCCCCGCGTCGGTCCCTCTCTGCATGCTA-CGGATCCTGCTACCCATAACGCCTCAATTCTGGTC
770 TCGGC-CG--GGTCCCCCTCTGCGTGCTATC-GATCCTGCT-GCGACAAC-CCTC-GGTCTGGTC
* *
335144 TGATC-TAGACT-GAGACCAGTGCAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGGGG
828 TGATCTTAGACTAG-GA--A-TG-AACTCCGTATGCCTAAGCCAACCGACGAAAC-AA--GCGGG
335207 CGG
885 CGG
* * * * *
335210 GCACTATGCCGGCCTGAGAGACAGGATGCGTAAGCCGTGGATCGGGATGAGGGTGGTAGTTGGGT
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC--GAT-AGGGTGGTAGGTGGGT
* * * *
335275 TTTGGCTCATC-TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTGCAAATTAATACAATG
63 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATG
* **
335339 GTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTAACTATTTTTCACGATTTTT
127 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
335404 GAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGTAGTTTTGGTCCCAAACTTGGT
192 GAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGT
* *
335469 AGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCA
255 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
335534 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATCGCTACTGGCAGCAAA
320 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
335599 CCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAGGTTTGATGAGGGATAGGGGG
385 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
335664 CCAATATAAGGGCCACGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCTCAGCCCACC
450 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGCCC-CC
* * ** * * * *
335729 CGATCGTCGGAACCCTAATGTTGTCGGTCAGGTTCTTCGGTGACGCTCTGGTGATGGTGCACTGG
512 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGA-GCTCTGGTGATGGTGCCCCGG
** * * * ** *
335794 TGAAGAAAAATATGACACCAGAACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGT-TCG
576 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGATCT-G
* **
335858 AT-TCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTTTGTAT-CCTTA
640 ATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC-TA
* * * *
335921 AGTCAACCCATGAAACGAATATGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGGG
703 AGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGG
* * *
335986 CATCGGCCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATC
768 GATCGGCCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTGGTCTGATC
* * * * * *
336051 TTAGACTGGGAATGAACTTCGTATGCCTAAGGCAATCGACAAAACGAGCGGGCGG
833 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
* * ** * *
336106 GCACTACGTC-GCCAGAGAGACGGGATGCACAAGCTATGGATCGATAAGGTGGTAGGAGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
336170 GGCACATCTTCATGTTTCTCCATGTCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * **
336235 ATTAAGCCTTCACGTGAAGTTTCAGGGCAAGCCGACTCGTTTTCTATTTTTCAAGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
336300 CTTTTTGTGGTTCGAGATTTTTTAAAATACTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGAC
196 CTTTTTGCGGTTCG-GATTTTTTAAAAT-TTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
336365 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGAT
259 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
336430 TTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGA-ACTTTAATGGCTACTGGAAGCAAACCTG
324 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
336494 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAA
389 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
336559 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCGATCAC
454 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
* * *
336624 CGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGAAGGTCCGGTGATGGTGCCCCGGTGAAGAA
519 CGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCG-AGCTCTGGTGATGGTGCCCCGGTGAAGAA
* * ** *
336689 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCCACCATAACCCTCGATCTGATCTAATC
583 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGATCTGATCTGATC
* *
336754 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAA
648 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
336819 CGAAACGAGTGTGCGGGCACTTAACCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGTCGG
713 CGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGG
* * * * *
336884 GCCCCCCTCTGTGTACTATCAATCCTGCTGCGACAACCCTCGGTCCGGTCTGATCTTAGACTAGG
778 GTCCCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTGGTCTGATCTTAGACTAGG
*
336949 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGG
843 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
*
336994 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
337059 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
337124 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
337189 ---------------A-----T---A-TTTTTGAAAGGAGTTTTGACCCCAAACTTGGTAGACGT
196 CTTTTTGCGGTTCGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
337230 GATCCTTGTGTTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
261 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
**
337294 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAAA
326 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
337359 AAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCGCAAGGTTTGATGAGGGATAGGGGGCCAATA
391 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
337424 TAAGGGCCAAGTACGAGCACCCACCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATTGTCG
456 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCG
* * * * * *
337489 GAACCCCAATGTCGTCGGGCAGGTTCTCCGGCGATGCTTTGGCGATGGTGCCCCGGTGAAGAAAA
521 GAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGA-GCTCTGGTGATGGTGCCCCGGTGAAGAAAA
* ** * *
337554 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGTTGTCGCAACCCTC-AGTC-CAGTCTGATC
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGA-TCTGA-TCTGATC
* * *
337617 TTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTAAACCCA
648 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
337682 CAAAACGAGGGTGCGGGGC-CTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGCCG
713 CGAAACGAGTGTGC-GGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCG
* ** * * *
337746 GGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTG-CAACCCTCGGTCTAGTCTGATCTTAGACTG
777 GGTCCCCCTCTGCGTGCTATCGATCCTGCTGC-GACAACCCTCGGTCTGGTCTGATCTTAGACTA
* *
337810 GGAACGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-TGGGCGG
841 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCGG
* * * *
337857 GCATTACGCCGGTCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
***
337922 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
337987 CTTAAAGCCTTCACGGTGGAATGTTTCATGGCAAGACAGACTCGTTTTCCATTTTTCACGATTTT
131 CTT-AAGCCTTCAC-GT-GAA-GTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCACGATTTT
* * **
338052 TGAAACTTTTTGCAGTTTGGTATTTTTT-AAATTTTCTCAAAAGGAGTTTTGGCGCCC-AACTTT
191 TGAAACTTTTTGCGGTTCGG-ATTTTTTAAAATTTT-TTGAAAGGAGTTTTGGC-CCCAAAC-TT
* *
338115 GGTATGACATTGATCCTTGTATTTTTGTTGGCCATGCACAAAAAAAATTCAAGCTTAAAAAGTCG
252 GGTA-GAC-GTGATCCTTGTATTTTTGTTGG-CATGCAC-AAAAAAATTC-AGC-TAAAAACTCG
* *
338180 AAGTGTACAAGATTTTCATAACCATTTG-AAAAAGTGTCCCCAGTTTCAGACACTTTAACATGCT
311 AAGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTT-A-ATG--
* * *
338244 TACTTACTTGGCAGGCAAACCTTTTAAATCTCAAATTGCTTCTTTAA-GGGGTGTGAGTTCTCGA
370 -GC-TAC-TGGCA-GCAAACCTGTAAAATCTCAAA-TGC-TCTTTAAGGGGGTGTGAGTTCTCGA
* *
338308 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCATATCATGTGC
429 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
338372 GCACACCCCCCGGCCCCCCCGATCGTCGGA
494 GCACACCCCCCGG-CCCCCCGATCGCCGGA
338402 TCGATAGCGT
Statistics
Matches: 4252, Mismatches: 524, Indels: 308
0.84 0.10 0.06
Matches are distributed among these distances:
852 6 0.00
854 1 0.00
855 8 0.00
856 274 0.06
857 161 0.04
859 7 0.00
860 174 0.04
861 80 0.02
862 94 0.02
863 642 0.15
864 19 0.00
865 3 0.00
866 4 0.00
867 16 0.00
868 32 0.01
870 1 0.00
871 1 0.00
873 3 0.00
874 2 0.00
876 1 0.00
877 1 0.00
881 1 0.00
882 2 0.00
883 1 0.00
884 4 0.00
885 45 0.01
886 106 0.02
887 363 0.09
888 395 0.09
889 205 0.05
890 9 0.00
891 144 0.03
892 260 0.06
893 55 0.01
894 50 0.01
895 59 0.01
896 111 0.03
897 415 0.10
898 15 0.00
899 36 0.01
900 5 0.00
901 40 0.01
902 35 0.01
903 13 0.00
904 10 0.00
905 26 0.01
906 28 0.01
907 58 0.01
908 58 0.01
909 43 0.01
910 75 0.02
911 48 0.01
912 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGCGGTTCGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCG
GAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGAGCTCTGGTGATGGTGCCCCGGTGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAACCCTCGATCTGATCTGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTC
CCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
Found at i:337655 original size:26 final size:26
Alignment explanation
Indices: 337616--337668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
337606 CCAGTCTGAT
*
337616 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
*
337642 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
337668 C
1 C
337669 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:339921 original size:26 final size:26
Alignment explanation
Indices: 339892--339944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
339882 CTGATCTGAT
* *
339892 CTTAGACTGAGAATGAATTCTGTATG
1 CTTAGACTGAGAATGAACTCTCTATG
*
339918 CTTAGACTGGGAATGAACTCTCTATG
1 CTTAGACTGAGAATGAACTCTCTATG
339944 C
1 C
339945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTCTATG
Found at i:341373 original size:871 final size:875
Alignment explanation
Indices: 338399--344311 Score: 6912
Period size: 900 Copynumber: 6.7 Consensus size: 875
338389 CCCGATCGTC
* * *
338399 GGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTA
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
338464 ATGGCTTATAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
338529 GTTTTCAATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAAATTTTTTCGGA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGAA
* ** * * * *
338594 AGGAGATTTGTTCCTAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGAACAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * *
338659 TCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAATGTCCTCATTTCGGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
338724 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** *
338789 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATG
390 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
338854 TGCGCACACCCCCTTGGCCCCCCCGATCGCTGGAACCCTAATG-C-TACTGGTCAGGTTCTCCGG
455 TGCGCACACCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGT-C-GGTCAGGTTCTCCGG
* * *
338917 CGATGCTGCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCCAGCCCAGCA
516 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
338982 AGTGCTACCGCAACCC-T-TG-G-T-TC-GG-TCTG-AT-CTTAGACTGGGAATGAACTTC-TGA
581 TGTGCTGCCGCAACCCGTCGGCGATCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGT-A
* * * * * * * *
339037 TGCCTAAGTCAACCTACGAAACGAGCGTACGAGCACCCAGCCGACCAGAGGGTCGGGTTCCGGAA
645 TGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAA
* * * * * * *
339102 GCCGGGGATCGATCGGGTCCTCCTTTGCATCCTGCCGATCCTGCTATCAG-AACCCTTGGTCTGG
710 GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTA-CCGCAACCCTTGGTCTGG
* * * * * **
339166 TTCAATCTTAGATTGAGAATGAACTCTGTATGCCTAAGCCAACTGATTAAACAAGTAGGTGGGCG
774 TTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC----A-----GCG
* * * ** *
339231 GGCGGGTGGGCACTATGCCTGCCAGAGAGACTAGATGCGCAAGCTGT
829 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* ** *
339278 GGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGTGTGGCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
339343 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
339408 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTTGGGATTTTTTTAAATTTTTTCGAAA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * * *
339473 GGAGTTTTGGCCCCAAACTTGGAATACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
339538 CAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
261 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
339603 CTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTT
326 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
* **
339668 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGT
391 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
339733 GCGCACAACGCCCCCTGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTG
456 GCGCAC-AC-CCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
** ** **
339798 ATGCTCCAACGATGGTGCCCCGTTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * *
339863 TGCTGGTGTAACCCTCGGTCTGATCTGATCTTAGACTGAGAATGAATTCTGTATGCTTAGACTGG
583 TGCTGCCGCAA-CC-C-GTC-G-GC-GATC----AC-G-G---G-A-TCTGTATGCTTAGACTGG
* * * *
339928 GAATGAACTCTC-TATGCCTAAGTCAACCCACGAAACTAGCGTGCGAGCGCTCAGTCGGCCAAAG
631 GAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAG
* * * * ** * *
339992 GGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCTTCTACACGCTACCGATCCTGCTGCCGT
695 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * *
340057 AACCCTCGGTCCGGTTCGATCTTAGACT-GG---G-A------ATG----A---AA-CGA-G---
760 AACCCTTGGTCTGGTT-GAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
340099 CA-------GGCGGGCACTACGTCGTCTAGAGATACGGGATGCGCAAGCCTT
824 CAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
340144 GCATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
340209 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGATGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
340274 GTTTTCTATTTTTCATGATTTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-TAG
131 GTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA-
* * * *
340338 ATGGATTTTTGGCCCCAAACTTGGTAGACGTGATCATTTTATTTTTGTTGGCATGCACAAAAAAA
194 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
340403 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
259 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
340468 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
324 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
340533 TTGAGGTTTGATGAGGGATAGGGGGCCAATATCAGGGCCAAGTACCAGCACCCATCACACATTAT
389 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
340598 GTGCGCACACCCCCCGGCCCCCCGATTGCCGGAACCCCAGTGCCGTCGGTCAGGTTCTCTGACGA
454 GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
** * *
340663 TGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGAATGT
519 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
340728 GCAGCCGCAACCC-TC-G-G-TC-C-GG-TCTG-AT-CTTAGACTGGGAATGAACTTCGTACGCC
584 GCTGCCGCAACCCGTCGGCGATCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
340784 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGCCG
649 TAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * *
340849 GGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTACTGCAACCCTCGATCCGATCTGA
714 GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTTGGTCTGGT-TGA
** * *
340914 ACTTAGACT-GGAATGAACTCCGTGGGCCTAAGCCGACCGACGAAACAAGCGGACGGGCAGGAGG
778 ACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCGGGCGGGC----GG
340978 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
838 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
341016 TGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
341081 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACCTGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
341146 GTTTTCTATTTTTCATGATTTTTGAAACATTTTACAGTTCAGGATTTTTTAAAATTTTTTCGAAA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
*
341211 GGAGTTTT-GCCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAT
196 GGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
341275 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTATCCCCATTTCAGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
341340 ACTTTAATGGCTATTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
341405 CGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACACCATG
390 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
341469 TACGTACACACCCCCCGG-CCCCCGACCGTCGGAACCTCAATGCCGCCGGTCTGGTTCTCCAGCG
455 TGCG--CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
** * * * *
341533 ATGCTCCGATGATGGTTCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
341598 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
583 TGCTGCCGCAA-CC-C-GT-CGG-C-GATC----AC-GGG-AT---CT--GTATGCTTAGACTGG
*
341663 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAATGAG
631 GAATGAACTCCGTATGC-----C------T--A------A-G--T----CAACCCACGAAACGAG
* * * * * * **
341728 TGTGCGGGTGCTCAGCC-AGCCAGAGGGGCTGGATGCGCAAGCCGAGGATCGGCCGACTCCCCCT
670 CGTGCGAGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
* ** * * * *
341792 ATGCGTGCTACCGATCCCACCACCGCAACCCTTGGTTTGGTTCGATCTTGGACTGGGAATGAACT
734 CTGCGTGCTACCGATCCTGCTACCGCAACCCTTGGTCTGGTT-GAACTTAGACTGGGAATGAACT
* * *
341857 CCGTATGCCTAAGCCAACCGATG-AA-A-CGAGCGGGCGGGCACTACGCCTGCCAGAGAGACGGG
798 CCGTATGCCTAAGCCAACCGACGAAACAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
341919 ATGCGCAAGCCGT
863 ATGCGCAAGCCGT
* * ** *
341932 GGATCGATAGGGTGGTAGGTGGGTTAAGGCTCATCTTCATATTTCTGTGTGCCAATGACATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
341997 ATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAACACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
342062 GTTTTCTATTTTTCAT-AGTTTTCAAAACTTTTTGTGCTTCGGGATTTTTTAAAATTTTTTCGAA
131 GTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * *
342126 AGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
342191 TCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
342256 ACTTCAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
342321 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACATCATG
390 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
342386 TACGCACACCCCCCGGCCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGA
455 TGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
*
342451 TGCTCCGGCGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
519 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
342516 GCTGCCCCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
584 GCTGCCGCAACCC---GT-CGG--CGATC----AC-GGG-AT---CT--GTATGCTTAGACTGGG
* * * * * *
342581 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGGGCAG-GCGGGCGCTCAGCTGGCTAGAGG
632 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGAGCGCTCAGCCGACCAGAGG
* * * * *
342645 GGCGGGATGCGCAAGCTGGGGATCGGCTGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACCGCA
696 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCA
* * * * *
342710 ACCCTTAGTCTGGTCTGATCTTCGACTGGGAATGAACTCCGTCTACCTAAGCCAACCGACGAAAT
761 ACCCTTGGTCTGGT-TGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-
* * * *
342775 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGCGATTCGCAAGCTGT
823 -A-C-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
342831 GGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTC-TGATTTCCGCATGCCAATGCCATTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGCCAATGCCA-TTT
* *
342895 TTATGGCTTGTAAATTCATACAATGG-CCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGA
64 TTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
342959 CTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
128 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
** * ** * * *
343024 GTAGGAGTTTTGGCCCCAAAATTGGTAGACACGATCTTTGTATTTTTGTTGGCATGCTCAAAAAC
193 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
343089 ATTCAGCTAAAAACTCGAAGTGTA-AAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
258 ATTCAGCTAAAAACTCGAAGTGTACAA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
343153 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTATGGGTGTGTGAGT
322 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
**
343218 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
387 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
343283 ATATGCGTACACCCCGCTCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
452 ATGTGCGCACACCCC-C-CGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * * * * *
343348 GTGATGCTCCGACGATGTTGCCCCGACGAAGAAAAATACGACACGAGCACATTCCCGAGCCTAAC
515 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
343413 ATGTGCTGTCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
580 ATGTGCTGCCGCAA-CC-CG-TC-GG--CGATC----AC-GGG-AT---CT--GTATGCTTAGAC
* * *
343478 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCC-AGCCA
628 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGA-CCA
* * * ** * ** *
343542 GAAGGGCGGGATGCGCAAGTCGAGGATCGACTAGG-CCCCCACTGCGTGCTACCGATCCCACTGC
692 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTAC
** * *
343606 CGCAACCCTTGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACAGAT
757 CGCAACCCTTGGTCTGGT-TGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * *
343670 GAAACGTGCGGGCGGGCAGGCACAAAGCCGGCCAGAGAGACGGGATACGCAAGCCTT
820 GAAAC-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
343727 GGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * * * *
343792 ATGGCTTGTACATTCATACAGTGGTCCCTTAAGCCTTCACGTGATGTTTCATGGAAAGACAACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
343857 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTGTAAAATTTTTTCGAAA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* ** *
343922 GGAGTTCTGTTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
343987 CAGCTAAAAACTCGAAGTGTATAATATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTAAGATA
261 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
344051 CTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG-GAGTTCTT
326 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
*
344115 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGA
391 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** ** *
344180 GCGCACACCCCCCGGCCCCCCCGATCATCGGAACCTTAATGCCGCCGGTCAGGTTCTCCGGCGAT
456 GCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* ** * *
344245 GCTCTGGCGATGGTGCCCCGACGAAGAAAAACACAGCACCAGCACATGCCTGAGCCCAGCATGTG
520 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
344310 CT
585 CT
344312 ACCGTAAATC
Statistics
Matches: 4356, Mismatches: 510, Indels: 323
0.84 0.10 0.06
Matches are distributed among these distances:
837 1 0.00
838 143 0.03
839 3 0.00
840 4 0.00
841 1 0.00
842 1 0.00
843 1 0.00
846 1 0.00
848 1 0.00
849 1 0.00
852 1 0.00
854 2 0.00
855 2 0.00
856 3 0.00
857 1 0.00
860 3 0.00
861 1 0.00
862 1 0.00
863 2 0.00
864 108 0.02
865 5 0.00
866 174 0.04
867 290 0.07
868 3 0.00
870 48 0.01
871 340 0.08
872 188 0.04
873 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 260 0.06
879 260 0.06
880 11 0.00
881 3 0.00
882 1 0.00
883 1 0.00
886 3 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 2 0.00
891 143 0.03
892 103 0.02
893 82 0.02
894 76 0.02
895 214 0.05
896 104 0.02
897 29 0.01
898 2 0.00
899 102 0.02
900 442 0.10
901 235 0.05
902 6 0.00
903 5 0.00
904 6 0.00
905 129 0.03
906 4 0.00
908 1 0.00
910 1 0.00
912 1 0.00
915 14 0.00
916 408 0.09
917 219 0.05
918 1 0.00
919 1 0.00
920 7 0.00
921 1 0.00
922 2 0.00
923 109 0.03
924 29 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCGTCGGCGATCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTTGGTCTGGTTGAACT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGGGCGGGCGGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGT
Found at i:341656 original size:26 final size:26
Alignment explanation
Indices: 341627--341705 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
341617 CCGGTCTGAT
341627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
341653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
341679 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
341705 C
1 C
341706 CTAAGACAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:342573 original size:26 final size:26
Alignment explanation
Indices: 342544--342596 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
342534 CCGGTCCGAT
342544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
342570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
342596 C
1 C
342597 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:343474 original size:26 final size:26
Alignment explanation
Indices: 343445--343497 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
343435 CTGGTCCGAT
343445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
343471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
343497 C
1 C
343498 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:344511 original size:26 final size:26
Alignment explanation
Indices: 344471--344526 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
344461 CCTGTACAAT
344471 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
344497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
344523 CTTA
1 CTTA
344527 AGTCAACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:345401 original size:308 final size:310
Alignment explanation
Indices: 344825--345438 Score: 986
Period size: 308 Copynumber: 2.0 Consensus size: 310
344815 TTCCAATTCC
* *
344825 TTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 TTTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGA
* *
344890 CGACTCATTTTCTATTTTTCACGATTTTTAAAAGTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
66 CGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* ** * *
344955 TCGGAAGGAGTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAA
131 TCGGAAGGAGTTGTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
345020 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
196 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
345085 AAGACACTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCCA
261 AAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCA
345135 TTTTTT-TGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGA
1 TTTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGA
* * *
345199 CGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-CTGGTTCGGGA-TTTTTAAAATTTT
66 CGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGC-GGTTCGAGATTTTTTAAAA-TTT
*
345262 TTTCGG-AGGAGTTGTAGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACA
129 TTTCGGAAGGAGTTGTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
345326 AAAAAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
194 AAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
345391 TCT-GGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
259 T-TAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
345439 TATCTTTAAG
Statistics
Matches: 281, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
308 166 0.59
309 109 0.39
310 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (310 bp):
TTTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGA
CGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
TCGGAAGGAGTTGTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
AAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCA
Found at i:345720 original size:26 final size:26
Alignment explanation
Indices: 345684--345736 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
345674 CTGGTCCGAT
345684 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
345710 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
345736 C
1 C
345737 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:347032 original size:26 final size:26
Alignment explanation
Indices: 347003--347054 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
346993 TCCGGTCCTA
*
347003 TCTTAGATTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
*
347029 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
347055 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:347786 original size:26 final size:26
Alignment explanation
Indices: 347735--347787 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
347725 CCCACCGAAT
*
347735 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCATATG
* * *
347761 CTTAGACTGGGAGTGAATTTCATATG
1 CTTAGACTGGGAATAAACTTCATATG
347787 C
1 C
347788 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCATATG
Found at i:348294 original size:26 final size:26
Alignment explanation
Indices: 348258--348310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
348248 CTGATCCGAT
348258 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
348284 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
348310 C
1 C
348311 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:348651 original size:523 final size:522
Alignment explanation
Indices: 347651--348668 Score: 1387
Period size: 523 Copynumber: 1.9 Consensus size: 522
347641 GGTTCTTCGG
** * * * *
347651 CGATGGTGCCCCGGTGAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTTCTGTCGCA
1 CGATGGTGCCCCGACGAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACA
* * * * *
347716 ACCCTCGGCCCCACCGAATCTTAGACTGGGAATAAACTTCGTATGCTTAGACTGGGAGTGAATTT
66 ACCCTCGGCCCCACCGAATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATGAACTC
** * ** *
347781 CATATGCCTAAGTCAACCCCCGAAACGAGTTTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGC
131 CATATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGC
* * ** * *
347846 ATAAGCCGGGGATCGGTCGGGTCCCCATCTGCGTGATGCTGATCCTACTGCCACAACCCTGGATC
196 ACAAGCCAGGGATCGACCAGGTCCCCATCTACGTGATGCTGATCCTACTGCCACAACCCTGGATC
* ** ** * *
347911 CAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGATACGAGCGGACGG
261 CAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGACGG
* *
347976 GCGGGTGGGCACTATGCCGGGCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAAGGTGGTAGG
326 GCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAAGGTGGTAGG
* * *
348041 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGCTTTGTAAATTCATAC
391 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGCCTTGTAAATTCATAC
*
348106 AATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGAGGTCAGGTTCTCCGACAATGCTCCT
456 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGTCAGGTTCTCCGACAATGCTCCT
348171 GA
521 GA
* * *
348173 CGATGGTGCCCCGACGAAGAAAACTGCGGCACCAGTACATGCCTGAGCCTAGCATGTGCTGCCAC
1 CGATGGTGCCCCGACGAA-AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCAC
* * ** * *
348238 AACCTTCGGTCTGATCCG-ATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAAC
65 AACCCTCGGCCCCA-CCGAATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATGAAC
* *
348302 TCCGTATGCCTAGGTCAACCAACG-AACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGAT
129 TCCATATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGAT
* * * * * ***
348366 GCGCAAGCCAGGGATCGACCAGGTCCCCCTCTACGTGCTG-TCGATCTTGCTGTTGCAACCCTTG
194 GCACAAGCCAGGGATCGACCAGGTCCCCATCTACGTGATGCT-GATCCTACTGCCACAACCC-TG
* *
348430 G-TCCAATCCAATCTTTGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAACGG
257 GATCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGG
* * * *
348494 GCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGGGTAGGGTG
322 ACGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATC-GATAAGGTG
* * *
348559 GTAGGTGGGTTTAGGCACATGTTCCTATTTCTACATGCCAATACAGTTTTTATGCCTTGTAAATT
386 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGCCTTGTAAATT
348624 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
451 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
348669 CGACTCATTC
Statistics
Matches: 427, Mismatches: 64, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
521 1 0.00
522 202 0.47
523 221 0.52
524 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (522 bp):
CGATGGTGCCCCGACGAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACA
ACCCTCGGCCCCACCGAATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATGAACTC
CATATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGC
ACAAGCCAGGGATCGACCAGGTCCCCATCTACGTGATGCTGATCCTACTGCCACAACCCTGGATC
CAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGACGG
GCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAAGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGCCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGTCAGGTTCTCCGACAATGCTCCT
GA
Found at i:349184 original size:26 final size:26
Alignment explanation
Indices: 349155--349205 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
349145 CCGGTCCGAT
349155 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
349181 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
349206 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:349923 original size:25 final size:26
Alignment explanation
Indices: 349886--349937 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
349876 CTGGTCCGAT
349886 CTTAGACTAGGAAAGAACTC-GTATG
1 CTTAGACTAGGAAAGAACTCTGTATG
* *
349911 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCTGTATG
349937 C
1 C
349938 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCTGTATG
Found at i:350809 original size:26 final size:26
Alignment explanation
Indices: 350780--350832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
350770 CTGATCCGAT
*
350780 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
350806 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
350832 C
1 C
350833 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:353795 original size:26 final size:26
Alignment explanation
Indices: 353765--353817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
353755 GTTGACTTAG
353765 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
353791 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
353817 G
1 G
353818 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:355434 original size:26 final size:26
Alignment explanation
Indices: 355398--355450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
355388 GTTGACTTAG
*
355398 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
355424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
355450 G
1 G
355451 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:357109 original size:26 final size:26
Alignment explanation
Indices: 357079--357131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
357069 GTTAACTTAG
*
357079 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
357105 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
357131 G
1 G
357132 ATCATATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:358005 original size:26 final size:26
Alignment explanation
Indices: 357969--358021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
357959 GTTGACTTAT
357969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
357995 GCATATGGAGTTCATTCTCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
358021 G
1 G
358022 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:358883 original size:26 final size:26
Alignment explanation
Indices: 358845--358900 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
358835 TGGGTTGACT
358845 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
358871 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
358897 TAAG
1 TAAG
358901 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:359302 original size:889 final size:887
Alignment explanation
Indices: 356401--359617 Score: 4713
Period size: 887 Copynumber: 3.6 Consensus size: 887
356391 CTCGGGCAAT
* *
356401 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGGCCCCTATCCCTCATCAAACCCCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAG
* *
356466 AACGCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
65 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
*
356531 CTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
130 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
356596 TTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTGTGGGGCCAAAACTCCTTC
195 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * ** *
356661 CGAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
260 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
356726 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACGAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
356791 GATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTATCACCCTATCGATCCACG
390 AATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACG
* * * * *
356856 GCTTGCGCATCCCGTCTCTATGGCCGACGTAGT----GCCCGTCCA--------CTCGTTTCATC
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTC
* * * * *** ** * *
356909 AGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACTGGATTGAGGTTTGCAGTAG
520 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAAACCGAGGGTTGCGGTAG
* * * * *
356974 CAGGATCAGCCGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGTTCATCCCGCCCCTCTGGC
584 CAGGATCAG-CACACGCAGA-GGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
* * * *
357039 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTA
647 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
* *
357104 AGCATATGGAGTTCATTCCCAGTCTAAGATC-ATA-TCGGACCGAGGGTTGCGATAGCACATGCT
712 AGCATATGGAGTTCATTCCTAGTCTAAGATCGA-ACT-GGACCGAGGGTTG-G-CAGCACATGCT
* * * *
357167 AGGCTCGAGCATGTTCTGGTGCCGTATTTTTCTTCATCGGGGCACT--ATCGTCGGAGAACCTGA
773 GGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACTACATCATCGGAGAACCTGA
* * **
357230 CCAGCGGTATTGGGGTTTTCGCCGATCGGGGGGCTGGGGGGTGTGTGCGCACA
838 CCGGCGGTATTGGGG-TTCCG-CGATCGGGGGGCCCGGGGG-GTGTGCGCACA
* * *
357283 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCTATCCCTCATCAAACCTCGAG
* *
357348 AACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGT
65 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
* * *
357413 CTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTTAAT
130 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
357477 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TT
195 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
*
357541 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
260 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
357606 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
357671 AATGGCATTGGCATGCAGAAATAAGAAGATGTTCCTAAACCGACCTACCACCCTATCGATCCACG
390 AATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACG
* *
357736 GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCACTCATTTCGTC
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTC
* *
357801 GGTTGGCTTAGGCATACGGAGTTCCTT-CCAGTCTAAGATTTGACCAAACCGAGGGTTGCGGCAG
520 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TTGACCAAACCGAGGGTTGCGGTAG
* * *
357865 CAGGATCGGCACACGTAGAGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
584 CAGGATCAGCACACGCAGAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
*
357930 GCTGAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
649 GCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
* *
357995 GCATATGGAGTTCATT-CTCAGTTTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGG
713 GCATATGGAGTTCATTCCT-AGTCTAAGATCGAACTGGACCGAGGGTT--GGCAGCACATGCTGG
* *
358059 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACT--ATCCA-CGGAGAACCTGAC
775 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACTACAT-CATCGGAGAACCTGAC
*
358121 CGGCGGCATTGGGGTTCCGCGATCGGGGTGG-CCGGGGGGTGTGCGCACA
839 CGGCGGTATTGGGGTTCCGCGATCGGGG-GGCCCGGGGGGTGTGCGCACA
** * *
358170 TGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCTATCCCTCATCAAACCTTGAGA
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGA
* * * *
358235 ACTCATACTCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
* *
358300 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
358365 CTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTTC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * * *
358430 G-AAAAATTTTAAAAATTCCCGAACAGCAAAATGTTTCAAAAATCGTGCAAAATAGAAAACGAGT
261 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
358494 TGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
358558 ATGGCATTGGCATGCAGAAATAAGAAGATGTTCCTAAACTGACCTACCACCCTATCGATCCACGG
391 ATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGG
* * *
358623 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCTGCCCACCCGCCTGCTCGTTT-GTCG
456 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCG
* * *
358686 GTTGGCTTAGGCATACGGAGTTCCTT-CCAGTCTAAGATTGACCAAACCAAGGGTTACGGTAGCA
521 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAAACCGAGGGTTGCGGTAGCA
* * *
358750 GGATC-GCACATGCAGAGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGC
586 GGATCAGCACACGCAGAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
358813 TGAGC-CCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCA
651 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCA
*
358877 TATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGGCAGCACATGCTGGGCTCG-
716 TATGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGGCAGCACATGCTGGGCTCGA
* *
358941 GCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAGAACCTG
781 GCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCA-C-T------A-CATCATCGGAGAACCTG
*
359006 ACTGGCGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACA
837 ACCGGCGGTATTGGGGTTCCG-CGATCGGGGGGCCCGGGGGGTGTGCGCACA
*
359058 TGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAG
* *
359123 AACTCACACCCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGT
65 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
* *
359188 CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTT-GCTGAA
130 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAA
* *
359252 TTTTTTTGTGCATGCCAACAAAAATAAAAGGATC-CTATCTACCAAGTTTGGGGCCAAAACTCCT
194 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCT
* *
359316 TTCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
258 TTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * * *
359381 AGTTGTCTTGCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATA
323 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
359446 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
388 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCA
* *
359511 CGGCTTGCGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCG
453 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
*
359576 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
518 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
359618 CGGACTGGAC
Statistics
Matches: 2120, Mismatches: 168, Indels: 82
0.89 0.07 0.03
Matches are distributed among these distances:
876 33 0.02
877 21 0.01
878 1 0.00
879 96 0.05
880 218 0.10
881 117 0.06
882 175 0.08
883 31 0.01
884 49 0.02
885 22 0.01
886 197 0.09
887 299 0.14
888 85 0.04
889 249 0.12
890 294 0.14
891 136 0.06
892 57 0.03
893 28 0.01
894 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAAACCGAGGGTTGCGGTAGCA
GGATCAGCACACGCAGAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCA
TATGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGGCAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACTACATCATCGGAGAACCTGACCGGCGGT
ATTGGGGTTCCGCGATCGGGGGGCCCGGGGGGTGTGCGCACA
Found at i:360244 original size:715 final size:716
Alignment explanation
Indices: 358874--360356 Score: 2544
Period size: 715 Copynumber: 2.1 Consensus size: 716
358864 CCCAGTCTAA
* *
358874 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTT-GGCAGCACATGCTGGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTCGGCAGCACATGCTGGGA
* *
358938 TCGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAGAAC
66 TCGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCAGCGAAGAAC
* *
359003 CTGACTGGCGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTCCGA
131 CTGACTAGCGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACAAGATGTCCGA
359068 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
359133 CCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGG
* * * *
359198 GACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTGCTGAATTTTTTTGTGC
326 GACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTGC
359263 ATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
391 ATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* *
359328 TTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCC
456 TTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
359393 TTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 TTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
359458 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
586 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
359523 CCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTA
651 CCCGTCTCTCTAGCAGGCATAGTGCCCGCCCGCCCACCGGCCCGCTCATTTCGTCGGTTGGCTTA
359588 G
716 G
*
359589 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-CGGCAGCACATGCTGGG
* * *
359654 ATCAGGCATTTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGAAGCATC-GCGAAGA
65 ATC-GGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCAGCGAAGA
* *
359718 ACCTGACTAGCGG-ATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGGTGTGCGCACAAGATGTGC
129 ACCTGACTAGCGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACAAGATGTCC
359781 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
* *
359846 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATG
359911 GGGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGT
324 GGGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGT
*
359976 GCATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAC
389 GCATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
360041 TTTTAAAAAATC-CTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
454 TTTTAAAAAATCTC-GAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
360105 GCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
*
360170 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
360235 TATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCGGCCCGTCGGCCCGCTCATTTCGTCGGTTGGC
648 CATCCCGTCTCTCTAGCAGGCATAGTGCCCGCCCGCCCACCGGCCCGCTCATTTCGTCGGTTGGC
360300 TTAG
713 TTAG
* * * * *
360304 GCATACGGAGTTCATTCCCAATCGAAGATCGAACCGGACCGAGGGTTACGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-CGGCA
360357 TCAGGATCAG
Statistics
Matches: 723, Mismatches: 41, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
714 1 0.00
715 614 0.85
716 23 0.03
717 36 0.05
718 49 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTCGGCAGCACATGCTGGGA
TCGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCAGCGAAGAAC
CTGACTAGCGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACAAGATGTCCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGG
GACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTGC
ATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
TTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTAGCAGGCATAGTGCCCGCCCGCCCACCGGCCCGCTCATTTCGTCGGTTGGCTTA
G
Found at i:360499 original size:26 final size:26
Alignment explanation
Indices: 360463--360515 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
360453 GTTGACTGAG
360463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
360489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
360515 G
1 G
360516 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:361234 original size:26 final size:26
Alignment explanation
Indices: 361198--361250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
361188 GTTGGCTTAG
361198 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
361224 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
361250 G
1 G
361251 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:363024 original size:26 final size:26
Alignment explanation
Indices: 362988--363040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
362978 GTTGACTTAG
362988 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
363014 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
363040 G
1 G
363041 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:363647 original size:904 final size:898
Alignment explanation
Indices: 361174--363781 Score: 3714
Period size: 904 Copynumber: 2.9 Consensus size: 898
361164 CCCGCCTGCC
*
361174 CGCTC-TTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
1 CGCTCATTTT-GTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
361238 TTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATCCAGGGATCGGGCATGTGCT
65 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
361303 GGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCTGGAGCATCATCAGAAAACTTGACCGACGG
130 GGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGC-GGAGCATC-TCGGAGAACCTGACCGACGG
* * * *
361367 CATTGGGGTTCC-AGCGATTGGGGGGCCGGGGGAGGGTGTGGGCACACATGATGTGCGATGGGTG
192 CATTGGAGTTCCGA-CGATCGGGGGG-C-----AGGG-G-GTGCGCACATGATGTGCGATGGGTG
* * *
361431 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACACACACCCCCTTA
248 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
361496 AAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
313 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
* * * *
361561 TTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCA
378 TTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
361626 ATAAAAATTCAAGGATCATGTCTACCAAGTTTAGGGCCAAAAC-TCCTTCCAAAAAAATTTTAAA
443 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAA
* * *
361690 AAAT-CCGAAACCGTAAAAAGTTTTGAAAATCATGAAAAACAGAAAATGAGTCATCTTGCCATGA
508 AAATCCCG-AACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGA
* * *
361754 AACTTCATGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCAG
572 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
361819 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGTATCCCG
637 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
361884 TCTCTCTGGCCGGCGTAGT-ACCCG-CC-T--GCCCGCCCACTCATTTCGTCGGTTGGCTTAGGC
702 TCTCTCTGGCCGACGTAGTGACCCGCCCGTCCGCCCG-CCGCTCATTTCGTCGGTTGGCTTAGGC
*
361944 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
766 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* *
362009 ACATAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTATGGTCAGCTGAGCGCCC
831 ACACAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTATGGTCAGCTGAACGCCC
362074 GCA
896 GCA
* * * * *
362077 CGCTCATTTCG-CAGTTAACTTAGGGCTTACAGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCA
1 CGCTCATTTTGTCGGTTGACTTA-GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
362141 TTCCCAGTCCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGC
65 TTCCCAGT-CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
362206 TGGTGCCGCATTTTTCTTTGCCGGGGCACCAT-------CA--TCGGAGAACCTGACCGGCGGCA
129 TGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCGGAGCATCTCGGAGAACCTGACCGACGGCA
* * * *
362262 TTAGCGTTCCGACGATC---GGG--GGGTGTGCGCACATTATGTGCGATGGGGTGCTGGTAC-TG
194 TTGGAGTTCCGACGATCGGGGGGCAGGGGGTGCGCACATGATGTGCGAT-GGGTGCTGGTACTTG
* * * *
362321 GCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAAAACTCACACCCCCTTAAAGAGCTTTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
362386 GAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAACTGTCTGAAATGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAAT
362451 TGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
388 TGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
362516 AAGGATCATGTCTACCAAATTTGGGACCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
453 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* ** * * *
362580 CCATAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
518 CCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
362645 AAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATG
583 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* ** * *
362710 AAGATGTGCCTAAACCCACCTACCACTCTATCGATCCA-GGCTTATGCATGCCGTCTCTCTAGCC
648 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
362774 GACGTAGTGCCCACCCGCCCGTCCGCCCGCCTGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
713 GACGTAGTG---ACCCGCCCGTCCGCCCGCC-GCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
** ** * * * *
362839 TTCATTCCCAGTCTAAGATGGGATCAGATTGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGAG
774 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAG
* * * *
362904 GGGGACCCGATCC-ATCC-CTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAACGCCCGCA
839 GGGGACCCG-GCCGATCCTC-GACTTGCGCATCCCGCCCCTATGGTCAGCTGAACGCCCGCA
* * *
362964 CGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCATTTTGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
363029 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
363094 GTGCCGCATTTTTCTTCGCTGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGACCTACGGCA
131 GTGCCGCATTTTTCTTCGCTGGGGCACCATCGC-GGAGCATC-TCGGAGAACCTGACCGACGGCA
*
363159 TTGGAGTTCCGACGATCGAGGGGGCAAGGGGGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
194 TTGGAGTTCCGACGATCG-GGGGGC-AGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
363224 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
363289 TGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTCGAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAA
*
363354 TTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA
387 TTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
363419 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-CTTCCAAAAAAATTTTAAAAAATCCCGA
452 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGA
* *
363483 ACCGTAAAAAGTTTTGAAAATCATTAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACATCACGT
517 ACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
363548 GAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGTAATAT
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
363613 GAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
647 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
363678 CGACGTAATG-CCCGCCCGCCCGCCCGCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
712 CGACGTAGTGACCCGCCCGTCCGCCCGCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *
363742 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCA
777 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCA
363782 AAACATGCTG
Statistics
Matches: 1510, Mismatches: 154, Indels: 85
0.86 0.09 0.05
Matches are distributed among these distances:
879 28 0.02
880 406 0.27
881 15 0.01
882 3 0.00
883 5 0.00
884 2 0.00
885 1 0.00
886 84 0.06
887 194 0.13
888 10 0.01
890 3 0.00
893 30 0.02
894 3 0.00
896 2 0.00
897 35 0.02
900 66 0.04
901 20 0.01
902 8 0.01
903 65 0.04
904 499 0.33
905 31 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
CGCTCATTTTGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGCTGGGGCACCATCGCGGAGCATCTCGGAGAACCTGACCGACGGCATT
GGAGTTCCGACGATCGGGGGGCAGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATTGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCATGTCTACCAAGTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGACCCGCCCGTCCGCCCGCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACC
CGGCCGATCCTCGACTTGCGCATCCCGCCCCTATGGTCAGCTGAACGCCCGCA
Found at i:364383 original size:708 final size:710
Alignment explanation
Indices: 363014--365202 Score: 3316
Period size: 708 Copynumber: 3.1 Consensus size: 710
363004 CCCAGTCTAA
* * * ** *
363014 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
363079 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCAGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
363143 AACCTGACCTACGGCATTGGAGTTCCGACGATCGAGGGGGCAAGGGGGTGCGCACATGATGTGCA
130 AACCTGACCGACGGCATTGGAGTTCTGGCGAT-G-GGGGG---GGGTGTGCGCACATGATGTGCA
*
363208 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
190 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACAC
363273 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGG
255 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGG
*
363338 GGACACCTTTTTCGAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
320 GGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
* *
363403 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCAAAAAAAT
385 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAAT
* *
363468 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATTAAAAAAAGAAAACGAGTCGTCTTGC
450 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
363533 CATGAAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
363598 GGCATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCA
580 GGCATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCA
*
363663 TCCCGTCTCTCTGGTCGACGTAATGCCCGCCCGCCCGCCCGCCGCTCTTTTCGTCGGTTGGCTTA
645 TCCCGTCTCTCTGGTCGGCGTAATGCCCGCCCGCCCGCCCGCCGCTCTTTTCGTCGGTTGGCTTA
363728 G
710 G
**
363729 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAAAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
363794 CTCGAGCATGTGCTGGTGCAGCTTTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
363859 ACCTGACCGCCGACATTGGAGTTCTGGCAAT-GGGGGGGGTGTGCGCACATGATGTGTAAT-GGT
131 ACCTGACCGACGGCATTGGAGTTCTGGCGATGGGGGGGGGTGTGCGCACATGATGTGCAATGGGT
363922 GCTGGTACTTGGCCCTTATATTCGG-CCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCT
196 GCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCT
363986 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACA
364051 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
325 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
364116 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
390 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
**
364181 AAAATCCCGAACCAAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
364246 AACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
520 AACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
364311 GCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACTCTATCGATCCACGGCTTGCGCATCCCG
585 GCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
364376 TCTCTCTGGTCGGCGT-A-G--TGCCCGCCCG--C-CCGCTCTTTTCGTCGGTTGGCTTAG
650 TCTCTCTGGTCGGCGTAATGCCCGCCCGCCCGCCCGCCGCTCTTTTCGTCGGTTGGCTTAG
**
364430 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
364495 CTCGGGCATGTCCTGGTGCCG-TATTTTTCTTT-GTCGGGGCACCATCACCGGAGCATCGCCGGA
66 CTCGGGCATGTGCTGGTGCCGCT-TTTTT-TTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
364558 GAACCAGACCGACGGCATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGAGTTCTGGCGAT-----GGG--GGGGGGTGTGCGCACATGATGT
*
364623 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACAC
187 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACTC
* * * * *
364687 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC-TTCGAAGTGTTTGA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATT-AAAGTGTCTGG
* ** *
364751 AATGGGAACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
315 AATGGGGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
364816 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAATGCCTTCCGAA
380 TTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
* * * *
364880 AAAATTTTAAAAAATCCTGAACCGTAAAAAG-TTTCAAAAGTCGTGAAAAATAGAAAATGAGTCG
445 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGAGTCG
* * *
364944 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAAT
509 TCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * * * *
365009 GGCATTGGCACGTTGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCAATCCATGGCT
574 GGCATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCT
* * * * *
365074 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC-CCCTACCCGCCCGCTCGTTTCGTCGG
639 TGCGCATCCCGTCTCTCTGGTCGGCGTAATGCCCGCCCGCCC-GCCCG-CCGCTCTTTTCGTCGG
*
365138 TCGGCTTAG
702 TTGGCTTAG
* * * * * *
365147 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCA
365203 GGATCGACAG
Statistics
Matches: 1350, Mismatches: 98, Indels: 50
0.90 0.07 0.03
Matches are distributed among these distances:
700 1 0.00
701 164 0.12
702 4 0.00
704 9 0.01
706 1 0.00
707 3 0.00
708 466 0.35
709 264 0.20
710 210 0.16
711 4 0.00
712 8 0.01
713 4 0.00
715 140 0.10
716 1 0.00
717 71 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGAGTTCTGGCGATGGGGGGGGGTGTGCGCACATGATGTGCAATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACAC
CTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGTCGGCGTAATGCCCGCCCGCCCGCCCGCCGCTCTTTTCGTCGGTTGGCTTAG
Found at i:365335 original size:26 final size:26
Alignment explanation
Indices: 365306--365357 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
365296 GTTGACTTAG
*
365306 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
365332 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
365358 ATTCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:366354 original size:890 final size:884
Alignment explanation
Indices: 364641--366654 Score: 2534
Period size: 890 Copynumber: 2.2 Consensus size: 884
364631 TGCTGGTACT
* *
364641 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAGAGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
364706 TTGAGATTTTATAGGTTTGCTGCCAGTAGCC-TTCGAAGTGTTTGAAATGGGAACATTTTTTTCA
66 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATGGG-ACATTTTTTTCA
*
364770 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
129 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAA
* * *
364835 TACAAGGATCACGTCTACCAAGTTT-GGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCTG
194 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAAATTTAAAAAATCCTA
* * * * *
364899 AACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
259 AACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACG
**
364964 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTGGCACGTTGAAATA
324 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTGGCACGCAGAAATA
*
365029 TGAAGATGTGCCTAAACCCACCTAACACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTAG
389 TGAAGATGTGCCTAAACCCACCTAACACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAG
* *
365094 CCGGCGTAGTGCCCGCCCCCCTACCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTT
454 CCGCCGTAGTACCCG---CCCTACCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTT
** *
365159 CATTCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGTAGCAGGATCGACAGCATACAGAGGG
516 CATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAGCATACAGAGGG
* * * * * *
365224 GGATCCGGCCGATCCCCGGCTTACGCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGT
581 GAACCCGGCCGATCCCCGGCTTACGCATCCCACCCTTCTGGCCGCCCGAGCGCCCACACGCTCAT
* * * *
365289 TCCATGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGCATACAGAGTTCGTTCCCAGT
646 TCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAAT
* ** * * * *
365354 CTAAATTCGGACCAGATCGAGGGTTGCGGCAGCAGATGCTAGGCTCAGGCATTTGCTGGTGTCAC
711 ATAAATTCAAACCAGACCGAGGGTTGCGGCAACACATGCTAGGCTCAGGCATGTGCTGGTGTCAC
* * *
365419 ATTTTTCTTCATCGGGTCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
776 ATTTTTCTTCATCGGG----CG-CGTC-GACCATCACCGGAGAACCTGACCGACGGCATTAGGGT
** *
365484 TCCGATGATCGGGGGGGCTGGG-GGGTGTGCGCACATGATGTGCGA-T-G
835 TCCGATGATCGGGGGCCCGGGGCGGGTGTGCGCACATGATGTGCGAGTGG
* *
365531 -GGCCCTTATATTGGCCCCCTAGCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
365595 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGAGACATTTTTTTCAA
66 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACATTTTTTTCAA
*
365660 ATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAAT
130 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAAT
* *
365725 ACAAGGATCACATCTACCAATTTTGGGGCCAAAACT-CTTTCC-AAAAAAATTTAAAAATAT-CT
195 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAAATTTAAAAA-ATCCT
* *
365787 CAAACTGGAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCA
258 -AAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCA
* *
365852 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAA
322 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTGGCACGCAGAAA
* * *
365917 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCT
387 TATGAAGATGTGCCTAAACCCACCTAACACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCT
* * * ** * *
365982 GGCCGACCGTAGTACCTG-CC-GCCCGTTCGCTCGTTTTGTCGGTTGGCTTAGG-ATACAGAGTT
452 AGCCG-CCGTAGTACCCGCCCTACCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTT
* * * * * *
366044 CATTCCGAGTCTAAGATCAGACCGGA-TCGAGGGTTACAGCAGTAGGAT-GGCAGCATGCCAGA-
516 CATTCCCAATCTAAGATCAGACCAGACT-GAGGGTTACAGCAGCAGGATCGACAGCAT-ACAGAG
* * * *
366106 GGTAACCCGAG-CTATCCCCGGCTTACCTCATCCCACCCCCTT-TGGCCAGCCCGAGAC-CCTAC
579 GGGAACCCG-GCCGATCCCCGGCTTA-CGCATCCCA--CCCTTCTGGCC-GCCCGAG-CGCCCAC
* * *
366168 ACGCTCATTTCATGGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAACGGGAGT
638 ACGCTCATTCCAT-GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT-AC-AGAGT
* *
366232 TCATTCAACAAATATATCGA-TCAAACTAGGAACCAGAGGGTTTGCAGGCAAACACATGCTAGGC
700 TCATTC--CAAATATA--AATTCAAACCA-G-ACC-GAGGG-TTGC-GGC-AACACATGCTAGGC
*
366296 TCGGGCATGTGCTAGGTGTC-CGTATTTTTTCTTCATC-GG-G-G-C-ACCATCACCGGAGAACC
755 TCAGGCATGTGCT-GGTGTCAC--A-TTTTTCTTCATCGGGCGCGTCGACCATCACCGGAGAACC
* * *
366355 TGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGCCCGGGGCGGGTGTGCGTACATGATGTGCGA
816 TGACCGACGGCATTAGGGTTCCGATGATCGGGGGCCCGGGGCGGGTGTGCGCACATGATGTGCGA
366420 TGGGTCTTGG
881 ---G---TGG
* * *
366430 TACTTGGCCCTTATATTGGTCCCTTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGA
1 ----TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
366495 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
62 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACATTTTTT
* * *
366560 TCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAG-TTGAATTATTTTGTGCATGCCAACA
126 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT-AATTTTTTTGTGCATGCCAAAA
*
366624 AAAATACAAGGATCACCTCTACCAAGTTTGG
190 AAAATACAAGGATCACATCTACCAAGTTTGG
366655 CTTAGGCATA
Statistics
Matches: 979, Mismatches: 97, Indels: 82
0.85 0.08 0.07
Matches are distributed among these distances:
884 27 0.03
885 62 0.06
886 32 0.03
887 57 0.06
888 11 0.01
889 226 0.23
890 251 0.26
891 37 0.04
892 6 0.01
893 3 0.00
894 2 0.00
895 6 0.01
896 4 0.00
897 3 0.00
898 25 0.03
899 7 0.01
900 3 0.00
901 12 0.01
903 2 0.00
904 201 0.21
905 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (884 bp):
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACATTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAAATTTAAAAAATCCTAAA
CCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTAACACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
GCCGTAGTACCCGCCCTACCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTC
CCAATCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAGCATACAGAGGGGAACC
CGGCCGATCCCCGGCTTACGCATCCCACCCTTCTGGCCGCCCGAGCGCCCACACGCTCATTCCAT
GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAATATAAA
TTCAAACCAGACCGAGGGTTGCGGCAACACATGCTAGGCTCAGGCATGTGCTGGTGTCACATTTT
TCTTCATCGGGCGCGTCGACCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCG
GGGGCCCGGGGCGGGTGTGCGCACATGATGTGCGAGTGG
Found at i:366871 original size:26 final size:26
Alignment explanation
Indices: 366815--366871 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
366805 GTGGGTTGAC
*
366815 TTAAGCATACGGAGTTCATTCCAAAT
1 TTAAGCATACGGAGGTCATTCCAAAT
* * *
366841 CTAAGCATACGGAGGTCATTCCCAGT
1 TTAAGCATACGGAGGTCATTCCAAAT
366867 TTAAG
1 TTAAG
366872 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
TTAAGCATACGGAGGTCATTCCAAAT
Found at i:368254 original size:719 final size:714
Alignment explanation
Indices: 366845--368267 Score: 1856
Period size: 719 Copynumber: 2.0 Consensus size: 714
366835 CCAAATCTAA
* * * * *
366845 GCATACGGAGGTCATTCCCAGTTTAAGATCGGACCGGATCGAGTGTTACGGTAGCACATGCTGGG
1 GCATACGGAGGTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
366910 CTCGGGCATGTGTTGGAGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* * *
366975 TCCTGACCGGCGACATTGGGGATCCGACGATCGGGGGGGCCGGTAGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGACATTAGGGATCCGACGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* * *
367040 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
196 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
367105 ACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * *
367170 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTCTG
* * * * * *
367235 TGCATGCCAACAAAAAGAAAGGGATCATGTCTACCGAGTTTGGGGCCAAATCTCCTTCTGAAAAA
391 TGCATGCCAACAAAAAAAAAAGGATCACGTCTACCGAGTTTGAGGCCAAAACCCCTTCTGAAAAA
* * *
367300 ATTTAGAAAAATCCCGAACCGCAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 ATTTAAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
*
367365 CCATGAAACTTCACGTAAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTAAAGGCTTAAAGGACCATGGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
367430 TGGCACGCAGAAATGTGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTCGCAC
586 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCAC
* * * *
367495 GTCCTGTCTCTCTGACCGTCGTAGTGCCATGCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGC
651 ATCCCGTCTCTCTG--CGTC--AGTGCCATG-CCGCCCGCCCGCCCGCCCGTTTCGTCAGTTGGC
367560 TTAG
711 TTAG
* * *
367564 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGGTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
367629 CTTGAGCATGTGCTGGTGCCACATTTTTCTTCGA-TGGGGCACCATCGCCGGAGCATCG-CTGGA
66 CTCGAGCATGTGCTGGAGCCACATTTTTCTTC-ACCGGGGCACCATCGCCGGAGCATCGTC-GAA
* * * * * *
367692 GAACTTGACCGGCGACATTATGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGACATTAGGGATCCGACGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATG
* *
367757 TGCGATGGGTGCTAGTACTTGGCTCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
367822 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* ** *
367887 AT-GGGACACTTTTTTCAAATGGTTACAAAATCTTTGTACACTTTGAGTTTTTAGCTAGAA-TTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTTGAGTTTGAAGAT-GAATTTT
367950 TCTGTGCATGCCAA-AAAAAAATACCAAGGATCACGTCTACC-AGTTTGAGGCCAAAACACCCTT
387 TCTGTGCATGCCAACAAAAAAA-A--AAGGATCACGTCTACCGAGTTTGAGGCCAAAAC-CCCTT
* * *
368013 C-GAAAAATTTTAAAAAAAATCTCC-AACGGTTAAAAAGTTT-GAAAATCCCGTTGAAAAAATAG
448 CTGAAAAAATTT-AAAAAAATC-CCGAACCG--AAAAAGTTTCAAAAAT--CG-TG-AAAAATAG
* *
368075 AAAACGATGTCATCTTGCCATGAAACTTTCACGTTGAA-GCTTAAGGGACCATGGTAT-AATTTA
505 AAAACGA-GTCATCTTGCCATGAAAC-TTCACG-TAAAGGCTTAAAGGACCATGGTATGAATTTA
* * *
368138 CAAGCCATTAAAAT-GCATTGGCACATAGAAATATGGAGATGTGCCTGAAACCCACCTACCACCC
567 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCC
* * *
368202 TATCGATTCCACGGGCTTGCGCATCCCGTCTCTCTG-G-C-G-G-CATAG-TGCCCGCCCGCCCG
631 TATCGA-TCCAC-GGCTCGCACATCCCGTCTCTCTGCGTCAGTGCCAT-GCCGCCCGCCCGCCCG
368261 CCCGTTT
693 CCCGTTT
368268 GCTTTACTTC
Statistics
Matches: 613, Mismatches: 68, Indels: 46
0.84 0.09 0.06
Matches are distributed among these distances:
718 35 0.06
719 342 0.56
720 30 0.05
721 33 0.05
722 8 0.01
723 8 0.01
724 2 0.00
725 3 0.00
726 44 0.07
727 58 0.09
728 28 0.05
729 22 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GCATACGGAGGTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
ACCTGACCGGCGACATTAGGGATCCGACGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTCTG
TGCATGCCAACAAAAAAAAAAGGATCACGTCTACCGAGTTTGAGGCCAAAACCCCTTCTGAAAAA
ATTTAAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTAAAGGCTTAAAGGACCATGGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCAC
ATCCCGTCTCTCTGCGTCAGTGCCATGCCGCCCGCCCGCCCGCCCGTTTCGTCAGTTGGCTTAG
Found at i:368485 original size:26 final size:26
Alignment explanation
Indices: 368456--368508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
368446 TCTGACTTAG
*
368456 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
368482 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
368508 G
1 G
368509 ATCGGAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:369395 original size:26 final size:26
Alignment explanation
Indices: 369361--369410 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
369351 GTTGACTTAG
369361 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
369387 GCATGCGGAGTTCATTCCCAGTCT
1 GCATACGGAATTCATTCCCAGTCT
369411 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:370606 original size:26 final size:28
Alignment explanation
Indices: 370570--370624 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
370560 GTTGACTTAG
*
370570 GCATACGGAG-TTCA-TTCCTAGTCTAA
1 GCATACGGAGTTTCATTTCCCAGTCTAA
*
370596 GCATATGGAGTTTCATTTCCCAGTCTAA
1 GCATACGGAGTTTCATTTCCCAGTCTAA
370624 G
1 G
370625 ATCGCACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.36
27 4 0.16
28 12 0.48
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (28 bp):
GCATACGGAGTTTCATTTCCCAGTCTAA
Found at i:371508 original size:26 final size:26
Alignment explanation
Indices: 371478--371530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
371468 GTTGACTTAG
371478 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
371504 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
371530 G
1 G
371531 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:372401 original size:26 final size:26
Alignment explanation
Indices: 372371--372423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
372361 GTTGACTTAG
372371 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
372397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
372423 G
1 G
372424 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:373015 original size:891 final size:892
Alignment explanation
Indices: 369605--376936 Score: 8982
Period size: 893 Copynumber: 8.2 Consensus size: 892
369595 ACCAATTTTT
* * *
369605 GGCTTGCGCATCCCA-CCCTCTGGCCGGCTGAGCGCCCGACACGCTTGTTTTGTGGGTTGACTTA
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTA
* * * * *
369669 GGGATACGGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGA
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* * * * ** *
369734 TCGAGGGTTCCGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCGGCA-TTTTCTTCGCCGAG
130 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * * ** *
369798 GCACCATCGCCAGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCAACGATC-GGGGG
195 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * *
369862 GCCAGGGGGTGTAACGCACATGAT-TGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCT
260 GCCGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
369926 ATCCCTCATCAAAACTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
324 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
369990 GCCAGTAAG-CATTAAAGTGGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
389 GCCAGT-AGCCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
370054 CACTTCGACTTTTTGGCTGAACTTTTTTTGTGCACGCC--AACAAATACAAGGATCATGTCTACC
452 CACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* *
370117 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCCGAACC-C-AAAAGTTTCAAA
516 AAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAA
* * * *
370180 AATCATGAAAAATAGAAAAGGAGTTGTCTTG-CATGAAACTTAACGTGAAGGCTTAATGGACCAT
580 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
370244 TGTATGAATTTACAAGTCATAAAAATTGCATTGGCAATGCAAAAATATGAAGATGTGCCTAAACC
645 TGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGCAAAAATATGAAGATGTGCCTAAACC
* * * * * *
370309 CACCTACCACCCTCTCGATCCATGGATTGGGCATCCCGTCTCTCTGGCTGAACGTAGTGCCCGCC
709 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-ACGTA--GCTCG-C
* * *
370374 CCGCCCCGCCGGCCACTCTTTTCGTTGGTTGGCTTAGGCATACGGAATTCATT-CCAGTCTAAGA
770 CCG---C-CC-G---CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
370438 TCAGACGAGACCAAGGGTTGTGGCAGGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCC
827 TCGGACGAGACCGAGGGTTGCGGCA-GCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
*
370503 CT
891 CC
** * * * * * *
370505 AACTTGCGCATCTCGCTCGTCTGGCTGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
370570 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTTCATTTCCCAGTCTAAGATCGCACCGG
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TTCA-TTCCCAGTCTAAGATCGGATCGG
* * * * ** *
370635 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCTTGTGCTAGTGTTGTATTTTTCTTCATCGG
129 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * *
370700 GGCACCATCCACCGGAGCATCGCCAGATGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
194 GGCACCAT-CACCGGAGCATCGTCGGA-GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* *
370765 GGGGCCAGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
257 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
370830 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
322 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
370895 CTGCCAAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTG
387 CTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTG
370960 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATACAAGGATCACGTCTAC
450 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * *
371024 CAAATTTGGGGGCCAAAAATCCTTCCGAATAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCA
515 CAAGTTT-GGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTC-
* * *
371089 AAAAATCATGAAAAAGAGAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
577 AAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
371154 CCATTGTTTTAATTTACAAGCCATAAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGGCTA
641 CCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
* * * * * *
371219 AACCCACCTACCACCCTGTCGATCCACGACTTGCGAATCCCGTCTATCTGGCCGGCATAGTTCCC
705 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-A-CG-T--A
* * * * * * *
371284 GCCCGCCCGCCCGCTCGTTTCGTCGATTTGCTTAGGCATACGAAATTCATTCCTAGTCTAAGATT
764 GCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * * *
371349 GAACCAGACCGAGGGTTGCGGTAGTAAGATCGACAGCATGCAGCGGAGGACTCGACCGATCCCC
829 GGACGAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * *
371413 TGGCTTGC-CATCCCGCCCCTTTGGCCGGCTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTA
1 -GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
371477 GGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGG
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
** * *
371542 CCGAGCATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGG
130 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* ** *
371607 GTACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCTG-CGATC-GGGG
195 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGG
* **
371670 GGCTGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGATCTTATATTGGCCCC
259 GGC-CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
371735 CTATCCCTCATCAAGCCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
322 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
371800 CTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTA
387 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
371865 CACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC-AAAAAAATACAAGGATAACGTCTACC
452 CACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * *
371929 AAGTTTGGGGCCAAAATCCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCGCACAAACTTTCCA
516 AAGTTTGGGGCCAAAAT-CCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAACTTTCAA
*
371994 CAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
579 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *** * **
372059 TTGTATGAATTTACAGGCCATAAAATTGGCATTGGCACGTGGAAATGTGAAGATGTGTATAAACC
644 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* *
372124 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAG-T-GCCCGC
709 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTCGCCCGC
* * * * **
372187 CTGCTCGTTTCGTCGATTGGTTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGA-AC
774 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GAGAC
* * * ** * *
372251 CGAGGGTTACGACAGTAGGATCGGCAGCACATAGAGGGGGACCCGATCAATCACC
838 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * * *
372306 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACTCCCGTTTCATAGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
372371 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * *
372436 CGAGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGG
131 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* *
372501 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
196 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
372566 TC-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
261 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
372630 CCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
326 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
372695 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACT
391 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
372760 TCAAGATTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAGTT
456 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
*
372825 TGGGGCCAAAATACCTT-CGTAAAAAATTTTAAAAAATCCCGAACCGCAAAAAACTTTTAAAAAT
521 TGGGGCCAAAAT-CCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGC-AAAAACTTTCAAAAAT
* *
372889 CATGAAAAATAGAAAACGAGTCGTTTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
583 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
372954 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
648 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * ** *
373019 TACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAG-T-GCCCGCCCGT
713 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTCGCCCGCCCGC
** * * * *
373082 TTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGATG
778 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGG
* * * * ** * * *
373147 GTTGTGGTAGTAGGATCGGGAGCACATAGAGGGGGACCCTACCGAT-CTC
843 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * *
373196 GACTTGTGCATCCCACCCTTCTGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
373261 GCATACGGAATCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGAACCAGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * *
373326 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGAGG
131 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
** * * *
373391 CACCATCATTGGAGCATTGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
196 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
373456 CCGGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
261 CCGG--GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
373521 ATCACTTATCAAACCTCGAGAACTC-GACCCTCTTAAAGAGCAATTTGAGATTTTACAGGTTTGT
324 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGC
* * * * *
373585 TGCCAATAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTGTAG
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
373650 ACTTCGAGTTTTTCGCTGAATTTTTTTGCTGCAT-CGCAAACAAAAAAACAAGGATCACGT-TAC
453 ACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGC-CAAA-AAAAATACAAGGATCACGTCTAC
* * **
373713 CAAGTTTAGGGCCAAAATCCGTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAACTTTCAAA
515 CAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAA
* *
373778 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCAT
580 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * **
373843 TGTATGAATTTACAAGCCATAAAAATTGCTTTGGCACACAAAAATATGAAGATGTGCCTAAACCC
645 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* *
373908 ACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCG
710 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC---GT----A---G
* * *
373973 CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATAACGGAGTTCATTCCCAGTCTAAGATC
765 CTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATC
* * * * **
374038 AGAC-CGATCGA-GGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCC
829 GGACGAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * *
374100 AGCTTGCGCATCCC-GCCCTCTGGTCGACTGAGCGCCCGCACGCTCTTTTTGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
374164 GCATACGGAAGTTTCATGCCCAGTCTAAGCATACGGAGTTGATTCCCAATCTAAGATCAGATCGG
66 GCATACGG-AG-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * * * * * *
374229 ACCAAGGGTTTCGACAGCACATGCTAGGCTCCGGCATGTGCTGGTGTCGTATTTTTCTT--T---
129 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * * * * *
374289 -G---C--CA-GGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGACCGAGC
194 GGCACCATCACCGG-AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
*
374347 GGGCCGTAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCT
258 GGGCCG--GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
374412 GCCTATCTCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT
320 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
374476 TGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC---A-----
385 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
374533 -A-A-----A-----T--C---------TTGTGCATGCC-AACAAAATACAAGGATCACGTCTAC
450 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
** * * * *
374574 CAAGTTCAGGGCCAAAACTCCTTCCGAAAAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTC-
515 CAAGTTTGGGGCCAAAA-TCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCA
** *
374638 AAAATTGTGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
578 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
374703 ATTGTATGAATATACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA-
643 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
* *
374767 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCA
708 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-CT-C-
* *
374832 TGGCCGCCGCCCGCTCGTTTTGGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
768 --G-C-CCGCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
374897 TGGACTG-GACTGACGGTTGCGGTAATC-GGATTGGCAGCACGCAGAGGGAGACCCGGTCGATCC
828 CGGAC-GAGACCGAGGGTTGCGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
374960 CC
891 CC
* * *
374962 GGCTTGTGCATCCCACCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
375027 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGA-CAGGA
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGA
* * * * *
375091 CCGAGGGTTACGGCAGCACATGCTGGGCACGAGCATGTCCTGGTGCCACATTTTTCTTCGTCGGG
130 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
** * * *
375156 GCACCATCGTCGGAGCATTGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
195 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
375221 GCCGGGAGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
260 GCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
375286 TATCACTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * * * * *
375351 TGCCAATAGCTATTAAAATGTCTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATATTGTAG
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
375416 ACTTTGAGTTTTTGGCTGAATTGTTTTCTGCATGCCAACAAAAAA-ACAAGGATCATGTCTACCA
453 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCA
* * *
375480 AGTTTGGGGCCAAAAATCCGT-CGAAAAAATTTTAAAAAATTCTGAACCGCAAAAACTTTCAAAA
517 AGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAA
* * *
375544 ATCATGAAAAATAGAAAACGAGTCATCTTGCCAGGAAAATTCACGTGAAGGCTTAAGGGACCATT
581 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * ** *
375609 GTATGAATTTACAAGCCATAAAAATTGCTTTGGCACAACAAAAATATAAAGATGTGCCTAAACCC
646 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCC
* * *
375674 ACCTACCA-CCTATCGATCCACGGC-TGCACATCCCGTCTCTCTGGTCGACGTAGTGCCCACCCG
710 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G----CTCG
* *
375737 CCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCG
769 CCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * *
375802 GACCCGACTGAGGGTTGTGGCAGCAGGATCGGCAGTACGCAGAGGGGGACCCGGTCGATCCCC
830 GACGAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* *
375865 AGCTTGCGCATCCCACCCCTCTGGCCGACTGTGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
375930 GCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * *
375995 CGAGGGTTTCGGCAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCGTATTTTTCTT--TGCTGG
131 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT-C-GG
* * * * *
376058 GG------CA-C----CATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCAACGATTGGGCG
194 GGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
**
376112 GGCCGGAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTA
259 GGCC-G-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
376177 CCTATCTCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
321 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
376242 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
386 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
376307 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
451 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** * * * * *
376372 AAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCAAACCGTAAATAGTTTCAAA
516 AAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAA
* * *
376437 AATTATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAC
580 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
376502 TGTATGAATTTACAAGCCATAAAAATGACATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
645 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* *
376567 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCACG
710 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-CT-----
* * *
376632 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTG
767 --CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * * *
376697 GACTAGACTGACGGTTGCGGCAACCGAATTGGCAGCACGCAGAGGGAGACCC-AGTCGATCCCT
830 GACGAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCC
* *
376760 GGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
376825 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * *
376890 TGA-GGTTGA-GGTTAGGCACATGCTGGGCTC-GACATGTGCTGGTGCCG
131 CGAGGGTT-ACGG-CA-GCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
376937 TATATCTTCG
Statistics
Matches: 5607, Mismatches: 652, Indels: 351
0.85 0.10 0.05
Matches are distributed among these distances:
853 1 0.00
854 2 0.00
855 1 0.00
858 3 0.00
859 1 0.00
860 55 0.01
861 187 0.03
862 184 0.03
863 91 0.02
867 1 0.00
870 1 0.00
871 81 0.01
872 133 0.02
873 3 0.00
874 1 0.00
875 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
890 266 0.05
891 528 0.09
892 265 0.05
893 806 0.14
894 310 0.06
895 378 0.07
896 17 0.00
897 3 0.00
898 1 0.00
899 12 0.00
900 76 0.01
901 104 0.02
902 168 0.03
903 599 0.11
904 271 0.05
905 318 0.06
906 167 0.03
907 74 0.01
908 232 0.04
909 69 0.01
910 5 0.00
911 10 0.00
912 19 0.00
913 14 0.00
914 116 0.02
915 16 0.00
916 5 0.00
917 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
Found at i:374217 original size:26 final size:28
Alignment explanation
Indices: 374164--374218 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
374154 GTTGACTTAG
*
374164 GCATACGGAAGTTTCATGCCCAGTCTAA
1 GCATACGGAAGTTTCATGCCCAATCTAA
* *
374192 GCATACGG-AG-TTGATTCCCAATCTAA
1 GCATACGGAAGTTTCATGCCCAATCTAA
374218 G
1 G
374219 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 14 0.58
27 2 0.08
28 8 0.33
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (28 bp):
GCATACGGAAGTTTCATGCCCAATCTAA
Found at i:375967 original size:26 final size:26
Alignment explanation
Indices: 375931--375981 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
375921 TTGACTTAGG
375931 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
375957 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
375982 GATCAAATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:376814 original size:895 final size:896
Alignment explanation
Indices: 374538--376939 Score: 3542
Period size: 903 Copynumber: 2.7 Consensus size: 896
374528 TCACAAAATC
374538 TTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCG-A
*
374602 AAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTC-AAAATTGTGAAAAATAGAAAACGAGTCG
65 AAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
*
374666 TCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAAT
130 TCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
374731 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCT
195 -GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * **
374795 TGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCATGGCCG-CCGCCCGCTCGTTTTGGTCGG
259 TGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCG-TTTCATCGG
* * *
374859 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGTAATC
323 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGACGGTTGCGGCAACC
*
374924 GGATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTAGCCG
388 GGATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCG
* * *
374989 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAG
453 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
375054 CATACGGAGTTCATTCCCAGTCCAAGATCGGA-CAGGACCGAGGGTTACGGCAGCACATGCTGGG
518 CATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTACGGCAGCACATGCTGGG
* * **
375118 C-ACGAGCATGTCCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCAGAG
582 CTA-GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT----GC--TG--AGAG
* ** *
375182 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCAAATGATG
638 AACCTGACCGACGACATTGGGGTTCCAACGATCGGGCGGGCCGGGAGGGGTGTGCGCAAATGATG
* *
375247 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCGAGAACTC
703 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTC
*
375312 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAATGTCTGAA
768 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAA
* * *
375377 ATGGGGACATTTTTTTCAAACGGTCACAAAATATTGTAGACTTTGAGTTTTTGGCTGAATTGTT
833 ATGGGGACATTTTTTTCAAACGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTGTT
* * * ** * *
375441 TTCTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCGT-CGAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
* * ** * * * *
375505 AAAATTTTAAAAAATTCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
66 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
* * *
375570 CTTGCCAGGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATT
131 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-T
* *** * *
375635 GCTTTGGCACAACAAAAATATAAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGC-
195 GCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * *
375698 TGCACATCCCGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCATCGGT
259 TGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * ** * * * *
375763 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGACTGAGGGTTGTGGCAGCAG
324 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGACGGTTGCGGCAACCG
* * * * *
375828 GATCGGCAGTACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGA
389 GATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGA
* *
375893 CTGTGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATC
454 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
375958 ATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTTCGGCAGCACATGCTAGGCT
519 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCT
*
376023 AGGGCATGTGCTGGTGCCGTATTTTTCTTTG-CTGGGGCACCATCGT-C-G-GAGAACCTGACCG
584 AGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGTGCTGAGAGAACCTGACCG
* * *
376084 GCGACATTGGGGTTCCAACGATTGGGCGGGCC-GGAGGGTGGTGTGCGCACATGATGTGCGATGG
648 ACGACATTGGGGTTCCAACGATCGGGCGGGCCGGGA-GG-GGTGTGCGCAAATGATGTGCGATGG
* * *
376148 GTGCTGGTACTTGGCCCTTATATTGGCTACCTATCTCTCATCAAATCTCGAGAACTCACACCCCC
711 GTGCTGGTACTTGGCCCTTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCACACCCCC
* * *
376213 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
776 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGAC
* * *
376278 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
841 ATTTTTTTCAAACGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTGTT
376334 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
*
376399 AAAATTTTCAAAAATCCCAAACCGTAAATAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
66 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
*
376464 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
131 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
376529 ACATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
196 -CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
376594 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
260 GCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
*
376659 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGACGGTTGCGGCAACCGA
325 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGACGGTTGCGGCAACCGG
* * *
376724 ATTGGCAGCACGCAGAGGGAGACCCAGTCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGGC
390 ATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGAC
*
376789 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
455 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
376854 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGA-GGTTGA-GGTTAGGCACATGCTGGG
520 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT-ACGG-CA-GCACATGCTGGG
* *
376917 CT-CGACATGTGCTGGTGCCGTAT
582 CTAGGGCATGTGCTGGTGCCGTAT
376940 ATCTTCGTAG
Statistics
Matches: 1328, Mismatches: 153, Indels: 44
0.87 0.10 0.03
Matches are distributed among these distances:
891 3 0.00
892 41 0.03
893 282 0.21
894 148 0.11
895 290 0.22
896 13 0.01
898 1 0.00
902 32 0.02
903 419 0.32
904 89 0.07
905 10 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTTG
GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGACGGTTGCGGCAACCGGA
TTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGACT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTAG
GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTGCTGAGAGAACCTGACCGACG
ACATTGGGGTTCCAACGATCGGGCGGGCCGGGAGGGGTGTGCGCAAATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGACATTTT
TTTCAAACGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTGTT
Found at i:376861 original size:26 final size:26
Alignment explanation
Indices: 376825--376877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
376815 GTTGACTTAG
*
376825 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
376851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
376877 G
1 G
376878 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:378493 original size:26 final size:26
Alignment explanation
Indices: 378457--378508 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
378447 TTGGCTTAGC
*
378457 CATACGGAGTTCATTCCCAGTTTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
378483 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
378509 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:381028 original size:26 final size:26
Alignment explanation
Indices: 380998--381050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
380988 GTTAACTTAG
*
380998 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
381024 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
381050 G
1 G
381051 ATCGTATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:381927 original size:26 final size:26
Alignment explanation
Indices: 381891--381943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
381881 GTTGACTTAT
381891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
381917 GCATATGGAGTTCATTCTCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
381943 G
1 G
381944 ACCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:382818 original size:26 final size:26
Alignment explanation
Indices: 382780--382835 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
382770 TGGGTTGACT
382780 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
382806 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
382832 TAAG
1 TAAG
382836 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:383538 original size:903 final size:892
Alignment explanation
Indices: 379674--383581 Score: 5603
Period size: 892 Copynumber: 4.4 Consensus size: 892
379664 NNNNNNNNNN
* * *
379674 TTCGAAAAAATTTTCAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
1 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
379739 AGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAGGGGACCATTGTATGAATTTACAAGCCATA
66 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
379804 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
131 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
379869 CGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCTGCCCATCCGCCCGCTCGTTTCG
196 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
* **
379934 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGC
261 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGC
* ** ** ** * *
379999 AGTAGGGATCGATAGAACACAGAGGGGGACCCGACCGATCCCTAG-TTGCACATCCCGCCCCTTT
326 AGCA-GGATCGGCACCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
380063 GGCCGGCTGAACGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
390 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
380128 CCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGC
455 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * **
380193 TGGGGCTCGGGCATGTGCTAGTGCCGCGTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATC
520 T-GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G---CATC
* * *
380258 GGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGTGGGGGTCGGGGGGGTGTGCGCACATG
575 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG-CCGGGGGGTGTGCGCACATG
380323 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAA
638 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAA
*
380388 CTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCT
703 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCT
* * *
380453 GAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTTAATTTT
768 AAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTT
380518 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
833 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* * *
380578 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACG
1 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
380643 AGTTGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
66 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
380708 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTATCACCCTATCGATCCA
131 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
380773 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG------C-CCC-CTTGTTTCG
196 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
* * * *** ** * * *
380826 TCAGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACTGGATTGAGGTTTGCAGT
261 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGC
* * *
380891 AGCAGGATCAGC-CGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCT
326 AGCAGGATCGGCAC-CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
380955 GGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAGT
390 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * **
381020 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGTATCGGACTGAGGGTTACGATAGCACATGC
455 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
381085 TAGGCTCGAGCATCTTCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG--TCGGAGAACCTG
520 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCATCGGAGAACCTG
* * * * * *
381148 ACCAGCGGTATTAGGGTTCCAACGATCAGGGGGCTGGGGGGGTGTGTGCGCACATGATGTGCGAT
585 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC--CGGGGG-GTGTGCGCACATGATGTGCGAT
381213 GGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
647 GGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* *
381278 CCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGA
712 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAATGGGA
* *
381343 CACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTTAATTTTTTTGTGCAT
777 CACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
381408 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
842 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* * *
381459 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACG
1 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
381524 AGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
66 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * **
381589 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTTCCTAAACTGACCTACCACCCTATCGATCCA
131 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
381654 CGGCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCACTCATTTCA
196 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
* * * **
381719 TCGATTGGCTTAGGCATACGGAGTTCCTTCGCAGTCTAAGATTTGACCAAACCGAGGGTTGCGGC
261 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGC
* ** * * *
381784 AGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCTGCCCCTCTG
326 AGCAGGATCGGCACCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
381849 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
391 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
381914 TAAGCATATGGAGTTCATTCTCAGTTTAAGACCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
456 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* *
381979 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACTATC-CA-CGGAGAACCTGA
521 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCATCGGAGAACCTGA
**
382042 CCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTATGATGGG
586 CCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * ** * *
382107 TGCTGGTACTTGACCCTTATATTAG-CCCCTATCCCTCATCAAACCTTGAGAACTCATACTCCCT
650 TGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
382171 TAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTAAAATGGGGACA
715 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAAT-GGGACA
* * *
382236 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTCTTTTGTGCATGC
779 CTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
382301 CAACTAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCT
844 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* * * * * * *
382350 TTCGAAAAATTTTTAAAAATTCCCGAACAGCAAAATGTTTCAAAAATCGTGCAAAATAGAAAACG
1 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
382415 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCCATTGTATGAATTTACAACCCAT
66 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCAT
* * **
382480 AAAAATGGCATTGGCATGCAGAAATAAGAAGATGTTCCTAAACTGACCTACCACCCTATCGATCC
130 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
382545 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG-CCGCCCACCCGCCTGCTCGTTTC
195 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTC
* * * *
382609 GTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATTAGACCAAACCAAGGGTTACGG
260 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGG
* *
382674 CAGCAGGATCGGACACCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
325 CAGCAGGATCGG-CACCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
*
382739 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG
389 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
382804 TCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTCCGGCAGCACATG
454 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* **
382869 CTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC
519 CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---GCATCG--
* * * * *
382934 GAAGAACCTGACTGGCGGTATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCCCGCATGAT
576 G-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
382999 GTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACT
640 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
383064 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAATAGCCATTAAAGTGTCTAA
705 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAA
* * * *
383129 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTT-TCTGAATTTT
770 AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAG-TTTTTAGCTGAATTTT
* *
383193 TTTGTGCATGCCAACAAAAATAAAAGGATC-CTATCTACCAAGTTTGGGGCCAAAAATCCT
833 TTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAAATCCT
* *
383253 TTCGAAAAAATTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
1 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
383318 AGTTGTCTTGCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATA
66 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
383383 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
131 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
383448 CGGCTTGCGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCG
196 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
* *** *
383513 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAAGGTTGCGG
261 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACCGAGGGTTGCGG
383577 CAGCA
325 CAGCA
383582 CATGCTGGGA
Statistics
Matches: 2716, Mismatches: 248, Indels: 81
0.89 0.08 0.03
Matches are distributed among these distances:
878 1 0.00
879 5 0.00
880 39 0.01
881 489 0.18
885 6 0.00
888 1 0.00
890 89 0.03
891 413 0.15
892 549 0.20
893 308 0.11
894 4 0.00
895 1 0.00
899 2 0.00
900 6 0.00
902 176 0.06
903 405 0.15
904 222 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGC
AGCAGGATCGGCACCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCATCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAATGGGACACT
TTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
Found at i:384185 original size:717 final size:709
Alignment explanation
Indices: 382809--384281 Score: 2480
Period size: 717 Copynumber: 2.1 Consensus size: 709
382799 CCCAGTCTAA
* * *
382809 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTCCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTCCGGCAGCACATGCTGGG
* *
382874 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
66 ATCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* * *
382939 ACCTGACTGGCGGTATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCCCGCATGATGTCCG
131 ACCTGACTGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCCCACAAGATGTCCG
383004 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
*
383069 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAATAGCCATTAAAGTGTCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTAAAATGG
* * * * *
383134 GGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTTCTGAATTTTTTTGTG
326 GGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTG
383199 CATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAT
391 CATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAT
*
383264 TTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
456 TTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
383329 CTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
383394 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
586 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
383459 TCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTT
651 TACCGTCTCTCTAGCAGGCATAGTGCCCG-CCG-------GCCCGCTCATTTCGTCGGTTGGCTT
383524 AG
708 AG
* *
383526 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAAGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTCCGGCAGCACATGCTGGG
383591 ATCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
66 ATCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* * * *
383656 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
131 ACCTGACTGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCCCACAAGATGTCCG
383721 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
383786 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTAAAATGG
383851 GGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTG
326 GGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTG
* *
383916 CATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAACT
391 CATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAT
* * *
383981 TTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGC
456 TTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
384046 CTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
384111 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
586 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
384176 TATCGTCTCTCTAGCCGGCGTAGTGCCCGTCGGCCCGCTCATTTCGTCGGTTGGCTTAG
651 TACCGTCTCTCTAGCAGGCATAGTGCCCGCCGGCCCGCTCATTTCGTCGGTTGGCTTAG
** * *
384235 GCATACAGAGTTCATTCCCAATCGAAGATCGAA-TCGGACCGAGGGTT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTT
384282 ATGGCATCAG
Statistics
Matches: 712, Mismatches: 43, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
708 1 0.00
709 66 0.09
716 2 0.00
717 643 0.90
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTCCGGCAGCACATGCTGGG
ATCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
ACCTGACTGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCCCACAAGATGTCCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACAAATAGCCATTAAAGTGTCTAAAATGG
GGACATTTTTTCCAAATGGTCACAAAATCTTGTTCACTTCAAGATTTTTGCTGAATTCTTTGGTG
CATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAT
TTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
CTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TACCGTCTCTCTAGCAGGCATAGTGCCCGCCGGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:384430 original size:26 final size:26
Alignment explanation
Indices: 384394--384446 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
384384 GTTGACTGAG
384394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
384420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
384446 G
1 G
384447 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:385187 original size:26 final size:26
Alignment explanation
Indices: 385151--385203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
385141 GTTGGCTTAG
385151 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
385177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
385203 G
1 G
385204 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:386976 original size:26 final size:26
Alignment explanation
Indices: 386940--386992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
386930 GTTAACTTAG
386940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
386966 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
386992 G
1 G
386993 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:387591 original size:904 final size:899
Alignment explanation
Indices: 385146--387737 Score: 3642
Period size: 904 Copynumber: 2.9 Consensus size: 899
385136 CGTCGGTTGG
385146 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * *
385211 TGAACCGAGGGTTACGGAAGCATATCCAGGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * * *
385275 TCGGGGCACCATCGCTAGAGCATCATCAGAAAACCTGACCGACGGCATTGGGGTTCCAGCGATTG
131 T-GGGGCACCATC-C-AGAGCATC-TCGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCG
385340 AGGGGCCGGGGGAGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
192 A---G--GGGGGAGGG-G-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
385405 GGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTTCA
250 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
385470 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATCTTTTTTAAATGGTCACAAAAT
315 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATTGTCACAAAAT
* *
385535 CTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGT
380 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
385600 CTACCAAGTTTAGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAAT-CCGAAACCGTAAAAAG
445 CTACCAAGTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAG
* * * *
385663 TTTTGAAAATCGTGAAAAACAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
509 TTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
385728 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
574 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
385793 TAAACCCACCTACCACCCTATCGATCTACGGCTTGTGTATCCCGTCTCTCTGGCCGGCGTAGT--
639 TAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT-GCCGACGTAGTGC
* *
385856 --ACCCGCCCGCC-CGC-CCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
703 CCACCCGCCCGCCGCCCGCCTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
* *
385917 CTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGACC
768 CTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACC
* * *
385982 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCATTTCGCAGGTT
833 GATCCACGACTTGCGCATCCCGCCCCTCTGGTCAGCTGAACGCCCACACGCTCATTTCGCAGGTT
386047 AA
898 AA
* * *
386049 CTTAGGCTTACAGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGAAC
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
386114 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGC
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * * *
386179 CGGGGCACCAT------CA--TCGGAGAACCTGACCGGCGGCATTAGCGTTCCGACGATC-----
131 TGGGGCACCATCCAGAGCATCTCGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCGAGGG
* *
386231 GGG-GGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 GGGAGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
386295 CCTCTTCAAACCTCAAAAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
386360 AGTAGCAATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTT
326 AGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTT
* *
386425 AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * **
386490 GGGACCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCA
456 GGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA
* * *
386554 TGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
521 TGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
386619 GATTTTACAAGCCATAAAAATCGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTA
586 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
** *
386684 CCACTTTATCGATCCA-GGCTTGTGCATGCCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCGT
651 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT-GCCGACGTAGTGCCCACCCGCCCG-
* * * * **
386748 CCGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATGGG
714 CCGCCCGCCT-CTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * *
386813 ATCGGATCAAGGGTTGTGGTAGTAGGATTGACAGCACGCAGAGGGGGACCCGGTCC-ATCCACGG
778 ATCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCC-GACCGATCCACGA
* * * * * **
386877 CTTGTGCATCCCGCCCCTCTGGTCGGCTGAACGCCCACTCGCTCGTTTTGTGGGTTAA
842 CTTGCGCATCCCGCCCCTCTGGTCAGCTGAACGCCCACACGCTCATTTCGCAGGTTAA
* *
386935 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
387000 CGGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGC
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
387065 TGGGGCACCATCACAGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCGA
131 TGGGGCACCATC-CA-GAGCATC-TCGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCGA
* * *
387130 GGGGGCGAGGGGGTGCACACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
193 GGGGG-GAGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
387195 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
387260 TGCCAGTGGCTATTAAAGTGTCTGGAATGGGGACACCTTTTTCAAATTGTCACAAAATCTTGTAC
322 TGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATTGTCACAAAATCTTGTAC
*
387325 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
387390 GTTTGGGGCCAAAACAT-CTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
452 GTTTGGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
* * *
387454 ATCATTAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAAGGACCATT
517 ATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
387519 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCT
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
387584 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGATCGACGTAATGCCCGCCCGC
647 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTG-CCGACGTAGTGCCCACCCGC
* * *
387649 CCGCCCGCCCG--T-TCTTTTTGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
711 CCG-CCGCCCGCCTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * ***
387711 CGGACCAGATTGAGGGTTGTGGCAGCA
775 CAGATCAGACCAAGGGTTGTGGCAGCA
387738 CATGCTGGGC
Statistics
Matches: 1492, Mismatches: 164, Indels: 68
0.87 0.10 0.04
Matches are distributed among these distances:
878 30 0.02
879 419 0.28
880 3 0.00
881 3 0.00
882 12 0.01
883 2 0.00
884 2 0.00
885 2 0.00
886 275 0.18
887 3 0.00
892 31 0.02
894 2 0.00
895 2 0.00
897 35 0.02
901 64 0.04
902 2 0.00
903 128 0.09
904 429 0.29
905 48 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
TGGGGCACCATCCAGAGCATCTCGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCGAGGG
GGGAGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA
TGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGCCGACGTAGTGCCCACCCGCCCGCC
GCCCGCCTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC
AGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCACGACTTG
CGCATCCCGCCCCTCTGGTCAGCTGAACGCCCACACGCTCATTTCGCAGGTTAA
Found at i:388949 original size:708 final size:707
Alignment explanation
Indices: 386973--389152 Score: 3133
Period size: 716 Copynumber: 3.1 Consensus size: 707
386963 TAAGCATATG
* * **
386973 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * *
387038 ATGTGTTGGTGTCGCATTTTTCTTCG-CTGGGGCACCATCA-CAGGAGCATCGTCGGAGAACCTG
66 ATGTGCTGGTGCCGCATTTTTCTTTGTC-GGGGCACCATCACCA-GAGCATCGTCGGAGAACCTG
* * * * *
387101 ACCGACGGCATTGGAGTTCCGGCGATCGAGGGGGCGAGGGG-GTGCACACATGATGTGCAATGGG
129 ACCGACGGCATTGGAGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGG
*
387165 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
387230 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCTATTAAAGTGTCTGGAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GC-CTTAAAGTGTCTGGAATGGGGACA
387295 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
322 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
* *
387360 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCAAAAAAATTTTAA
387 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
* *
387425 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATTAAAAAAAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
387490 AACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
517 AACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAT
*
387555 GCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
582 GCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
387620 TCTCTCTGATCGACGTAATGCCCGCCCGCCCGCCCGCCCGTTCTTTTTGTTGGTTGGCTTAGGCA
647 TCTCTCTGGTCGGCGT-A-G--TGCCCGTCCG-CC-CAC--TCTTTTCGTCGGTTGGCTTAGGCA
387685 TACA
704 TACA
**
387689 GAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * *
387754 ATGTGCTGGTGCCGCATTTTT-TTTCATTGGGGCACCATCGCC-GCAGCATCGTCAGAGAACCTG
66 ATGTGCTGGTGCCGCATTTTTCTTT-GTCGGGGCACCATCACCAG-AGCATCGTCGGAGAACCTG
* * * * * *
387817 ACCGCCGACATTGGAG-TTCTGGCAATCGGGGGGACGGGGGGTGTGCGCACATGATGTGTAATGG
129 ACCGACGGCATTGGAGTTTC-GGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGG
* *
387881 GTGCTGGTACTTGGCCCTTATATTCAG-CCCCTATCCCTCATCAAACTTCGAGAACTCACACCCC
193 GTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
387945 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCC-TTAAAGTGTCTGGAATGGGGA
*
388010 CACCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTCAT
320 CACCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAT
*
388075 GTC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTT
385 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTT
**
388139 AAAAAATCCCGAACCAAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
450 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
388204 GAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGG
515 GAAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGG
**
388269 ATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCATTCTATCGATCCACGGCTTGCGCATCC
580 ATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
388334 CGTCTCTCTGGTCGGCGTAGTGCCCGTCCGCCCACTCTTTTCGTCGGTTGGCTTAGGCATACG
645 CGTCTCTCTGGTCGGCGTAGTGCCCGTCCGCCCACTCTTTTCGTCGGTTGGCTTAGGCATACA
* * *
388397 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACTTGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
** *
388462 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCAGAC
66 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGAC
* *
388527 CGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
131 CGACGGCATTGGAGTTTCGGCGATTGGGGGGG-CGGGGGGTGTGCGCACATGATGTGCAATGGGT
* *
388592 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACC-CTGCGAACTCACACCCCCT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCT
* * *
388656 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTCGAAGTGTCTGAAATGGGAACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCCTT-AAAGTGTCTGGAATGGGGACA
* * *
388721 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
322 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
* ** *
388785 CAAAAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAATGCCTTCCGAAAAAATTTTAA
387 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
* * * *
388849 AAAATCCCGAACCGTAAAAAG-TTTCAAAAGTCGTGAAAAATAGAAAATGAGTCGTCTTGCTATG
452 AAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* ** * * *
388913 AAACTTCATATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCACAAAAAAGGCATTGGGA
516 AAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGA
* ** * * * ** * *
388978 CGTTGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATTAATCTATGGCTTGCGCATCCC
581 TGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
389043 GTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCTGCCCGCCCGCACATTTCGTCGGTCGGCTTAGGC
646 GTCTCTCTGGTCGGCGTAGTGCCCG------T--CCGCCCACTCTTTTCGTCGGTTGGCTTAGGC
389108 ATACA
703 ATACA
* *
389113 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
389153 ATGGTGGCAG
Statistics
Matches: 1322, Mismatches: 117, Indels: 50
0.89 0.08 0.03
Matches are distributed among these distances:
707 7 0.01
708 386 0.29
709 231 0.17
710 2 0.00
711 2 0.00
712 8 0.01
714 2 0.00
715 6 0.00
716 468 0.35
717 209 0.16
718 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGAGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGCCTTAAAGTGTCTGGAATGGGGACACCTT
TTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACA
TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAG
TAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGTCGGCGTAGTGCCCGTCCGCCCACTCTTTTCGTCGGTTGGCTTAGGCATACA
Found at i:389295 original size:26 final size:26
Alignment explanation
Indices: 389265--389316 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
389255 GTTGACTTAG
*
389265 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
389291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
389317 TATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:390580 original size:892 final size:892
Alignment explanation
Indices: 388508--390601 Score: 2798
Period size: 890 Copynumber: 2.3 Consensus size: 892
388498 ATCACCAGAG
* * *
388508 CATCACCGGAGAACCAGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCG
* *
388573 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACC-
65 CACATGATGTGCGATGGGT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
388637 CTGCGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-TTCG
129 C-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-A
*
388701 AAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
192 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
388766 CTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAATG
257 TTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATG
* * * *
388830 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAA
322 CCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
388895 ATGAGTCGTCTTGCTATGAAACTTCATATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCC
387 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCC
* ** *
388960 ACAAAAAAGGCATTGGGACGTTGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATTAAT
452 ACAAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCAAT
* * * *
389025 CTATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCTGCCCGCCCGCACATT
517 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCG--CCCCTGCCCGCCCGCACATT
* *
389090 TCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAT
580 TCGTCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
* ** * * * ** *
389155 GGTGGCAGGATTGACAGCATGCAGAGGGGGATCCGACCGATCCTTGGCTTACGCATCCCGCCCCT
645 AGCAGCAGGATCGACAGCATGCAGAGGGAGACCCGACCGATCCCCGGCTTACGCATCCCACCCCT
* * * * * * *
389220 CTGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTCA
710 CTGGCCAGCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
*** ** * *
389285 GTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGATCGAGGGTTGCGGCAGCACAT
775 GTCTAAGCATACGGAGTTCATTCCCAAAATAATATCAAACCAGACCGAGGGTTGCGGCAACACAT
* * *
389350 GCTAGGCTTAGCCATTTGCTGGTGTCGTATTTTTCTTCATCGGGTCACCGTTGTCGGAG
840 GCTAGGCTCAGCCATGTGCTGGTGTCGTATTTTTCTTCATCGGG----CG-TGTC-GAC
* *
389409 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
*
389474 CACATGATGTGCGAT--G---GG-A------CCTTATATTGGCCCCCTATCCCTAATCAAACCTC
65 CACATGATGTGCGATGGGTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
389527 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
130 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
389592 CGTCTGAAATGGAGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGACTTTTTAGCTT
195 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TT
* *
389657 -AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACAACTACCAATTTTGGGGCCAAAACT-
259 GAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TG
* ** * *
389720 CTTTCCAAAAAAATTTAAAAAAATCTTGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAA
322 CCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
389785 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
387 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCC
* * * * * *
389850 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGAT
452 ACAAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCAAT
* * * * * *
389915 CCACGGCTTGCGCATCCCGTCTTTCTGGTCGACGTAGTACCCG-CCC-GCCCGGCCGCTCGTTTT
517 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCCTGCCCGCCCGCACATTTC
* * * * *
389978 GTCAGTTGGCTTAGGGATACAGAGTTCATTCCGAGTCTAAGATCAGACCGGA-TCGAGGGTTGCA
582 GTCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACA
* * * * * * *
390042 GCAGTAGGATCGGCAGCATGCAGAGGTAGACCCGAGCTATCCCCGGCTTACTCATCCCACCCCTT
646 GCAGCAGGATCGACAGCATGCAGAGGGAGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTC
* *
390107 TGGCCAGCTGAGCACCTACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
711 TGGCCAGCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
**
390172 TCTAAGCATACGGAGTTCATTCCCAAAATATATCGATCAAACTGGACCGAGGGTTGCGGCAACAC
776 TCTAAGCATACGGAGTTCATTCCCAAAATA-AT--ATCAAACCAGACCGAGGGTTGCGGCAACAC
* *
390237 ATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATC-GG-G-G-C-AC
838 ATGCTAGGCTCAGCCATGTGCTGGTGTCGTATTTTTCTTCATCGGGCGTGTCGAC
* * * ** *
390287 CATCACCGGAGAACCTGACCGGCGGCGTTAGGGTTCCGGTGATCGGGGGCCCGGGGAGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGG-GGGTGTGC
* * * *
390352 GTACATGATGTGCGATGGGTCTTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCTTCAAACC
64 GCACATGATGTGCGATGGGTC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
390417 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
128 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
390482 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGT
193 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGT
* *
390547 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGG
258 TGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGG
390602 CTTAGGCATA
Statistics
Matches: 1045, Mismatches: 120, Indels: 65
0.85 0.10 0.05
Matches are distributed among these distances:
877 6 0.01
878 42 0.04
879 23 0.02
880 1 0.00
881 2 0.00
883 1 0.00
885 3 0.00
886 201 0.19
887 5 0.00
888 151 0.14
889 113 0.11
890 217 0.21
891 5 0.00
892 198 0.19
894 1 0.00
895 2 0.00
899 1 0.00
900 1 0.00
901 72 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (892 bp):
CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGA
ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTT
CCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCACAA
AAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCAATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCCTGCCCGCCCGCACATTTCGTCA
GTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGC
AGGATCGACAGCATGCAGAGGGAGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCC
AGCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAAAATAATATCAAACCAGACCGAGGGTTGCGGCAACACATGCTAGG
CTCAGCCATGTGCTGGTGTCGTATTTTTCTTCATCGGGCGTGTCGAC
Found at i:391188 original size:623 final size:614
Alignment explanation
Indices: 389983--391224 Score: 1634
Period size: 623 Copynumber: 2.0 Consensus size: 614
389973 GTTTTGTCAG
* * * * *
389983 TTGGCTTAGGGATACAGAGTTCATTCCGAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTA
1 TTGGCTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAGCA
* * * * * * * * *
390048 GGATCGGCAGCATGCAGAGGTAGACCCGAGCTATCCCCGGCTTACTCATCCCACCCCTTTGGCCA
66 GGATCGACAGCACGCAGAGGGAGAACCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCA
* *
390113 GCTGAGCACCTACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
131 GCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * *
390178 CATACGGAGTTCATTCCCAAAATATATCGATCAAACTGGACCGAGGGTTGCGGCAACACATGCTA
196 CATACGGAGGTCATTCCC-AAATATATAGATCAAACTGGACCGAGGGTTACGGCAACACATGCTA
* * * *
390243 GGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCACCGGAGAACCTGACCG
260 GGCTCGAGCATGTGCTGGAGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCG
* * * * ** *
390308 GCGGCGTTAGGGTTCCGGTGATCGGGGGCCCGGGGAGGGTGTGCGTACATGATGTGCGATGGGTC
325 ACGACATTAGGGATCCGACGATCGGGGGCCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTC
* * *
390373 TTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTA
390 TTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
390438 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
455 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
** *
390503 TTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCA
520 TTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTGAAGATGAATTGTTTTGTGCATGCCA
*
390568 ACAAAAATACAA-GGATCACCTCTACCAAGT
585 ACAAAAAGA-AAGGGATCACCTCTACCAAGT
* * * *
390598 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATGAAACTGGACCGAGGGTTAC-GACAGC
1 TTGGCTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCAAACCGGACCGAGGGTTACAG-CAGC
* * * *
390662 AGGATCGACAGCACGTAGAGGGGGAACCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
65 AGGATCGACAGCACGCAGAGGGAGAACCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCC
* * * * *
390727 AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
130 AGCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * ** * * *
390792 GCATACGGAGGTCATTCCC-AGTTTA-AGATCGGA-TCGGATCGAGGGTTACGGTAGCACATGCT
195 GCATACGGAGGTCATTCCCAAATATATAGATCAAACT-GGACCGAGGGTTACGGCAACACATGCT
*
390854 GGGCTCGAGCATGTGCTGGAGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGA
259 AGGCTCGAGCATGTGCTGGAGCCGTATTTTTCTTCACCGGGGCACCA---TC--A-C--CG--G-
* * * *
390919 AGATCCTGACCGACGACATTGGGGATCCGACGATCGGGGGGGCC-GGTAGGGTGTGCGCACATGA
313 AGAACCTGACCGACGACATTAGGGATCCGACGATC-GGGGGCCCGGGGAGGGTGTGCGCACATGA
*
390983 TGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAA
377 TGTGCGATGGGT-CTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
391047 CTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
441 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
391112 GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTT
506 GAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTGAAGATGAATTG
* ** *
391177 TTTTTTGCATGCCAACAAAAAGAAAGGGATCATGTCTACCGAGT
571 TTTTGTGCATGCCAACAAAAAGAAAGGGATCACCTCTACCAAGT
391221 TTGG
1 TTGG
391225 GGCCAAATCT
Statistics
Matches: 539, Mismatches: 72, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
611 1 0.00
612 70 0.13
613 4 0.01
614 1 0.00
615 183 0.34
617 1 0.00
618 1 0.00
620 2 0.00
622 3 0.01
623 265 0.49
624 8 0.01
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (614 bp):
TTGGCTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAGCA
GGATCGACAGCACGCAGAGGGAGAACCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCA
GCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
CATACGGAGGTCATTCCCAAATATATAGATCAAACTGGACCGAGGGTTACGGCAACACATGCTAG
GCTCGAGCATGTGCTGGAGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGA
CGACATTAGGGATCCGACGATCGGGGGCCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTCT
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTGAAGATGAATTGTTTTGTGCATGCCAA
CAAAAAGAAAGGGATCACCTCTACCAAGT
Found at i:392419 original size:26 final size:26
Alignment explanation
Indices: 392390--392442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
392380 GTTGACTTAG
*
392390 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
392416 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
392442 G
1 G
392443 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:393438 original size:901 final size:903
Alignment explanation
Indices: 391511--393516 Score: 3070
Period size: 901 Copynumber: 2.2 Consensus size: 903
391501 GTTGGCTTAG
* * * * *
391511 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
** *
391576 CTTGAGCATGTGCTGGTGCCACATTTTTCTTCGAT-GGGGCACCATCGCCGGAGCATCGCTGGAG
66 CCCGGGCATGTGCTGGTGCCACATTTTTCTTC-ATCGGGGCACCATCGCCGGAGCATCGC-GGAG
* * * * * **
391640 AACTTGACCGGCGACATTATGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTG
* * *
391705 CGATGGGTGCTAGTACTTGGCTCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 TGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
391770 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
* * *
391835 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTCTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTCTA
* *
391900 TGCATGCCAAAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAA
389 TGCATGCC-AAAAAAAAATACAAAGATCACTTCTACCAAGTTTGGGGCAAAAACACCTTTCGAAA
***
391965 AAATTTTAAAAAATCTCCAACGGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCTCCAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
392030 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATTAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCATGAAAATGG
* * *
392095 CATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTG
* * * * *
392160 CGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCCCGTCTGCTTACTTCGTCGGTTG
648 CGCATCCCATCTCCCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCTGCTTACTTCGTCGGTTG
*
392225 GCTTAGGCACACGGAGTTCATTACCAGTCTAAGATCAGACCAGATTGAGGGTTACAGCAGCAAGA
713 GCTTAGGCACACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAAGA
* * * *
392290 TCGACAACACGTAGAGGGGGACCCGGCCAAGCCCCGGCTTTCGCATCCTGCCCCTCTGGCTGGCT
778 TCGACAACACGCAGAGGGGGACCCGACCAAGCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCT
* * *
392355 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
843 GAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
*
392416 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
392481 CCCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CCCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG-CGGAGA
*
392546 ACCTGACCGACGACATTAGGGTTCCGACGATCGAGGGGGCTAGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGT
* *
392611 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
195 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
392676 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
* *
392741 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTCTAT
* * * *
392806 GCATGCC-AAGAAAAATTCAAAGATC-GTGTCTACCAAGTTTGGGG-AAAAACTCC-TTCTGAAA
390 GCATGCCAAAAAAAAATACAAAGATCACT-TCTACCAAGTTTGGGGCAAAAACACCTTTC-GAAA
**
392867 AAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCTCCAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
*
392932 TTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCATGAAAATGG
*
392997 CATTGGCACGCAGAAATATGGAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTG
583 CATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTG
* * * * *
393062 CGCATCCCATCTCCCTGGCCGACGTTGT-CCCGCCCGCCCGTCCGCCTGTTTATTTCGTCGGTTG
648 CGCATCCCATCTCCCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCTGCTTACTTCGTCGGTTG
* * * * * *
393126 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAGCAGGA
713 GCTTAGGCACACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAAGA
* * * * * * *
393191 TTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTTTGGCTGGCT
778 TCGACAACACGCAGAGGGGGACCCGACCAAGCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCT
* * * *
393256 GAGCGCCTGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCATTCTAA
843 GAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * *
393317 GCATGCGGAGTTCATTCCCAGTTTGAGATCGGACCGGACTGAGGGTTACAGCAGCACATGCTGGG
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * *
393382 CCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAGA
66 CCCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATC-GCGGAGA
393447 ACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGT
393512 GATGG
195 GATGG
393517 AAGGGGACCC
Statistics
Matches: 999, Mismatches: 97, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
901 389 0.39
902 217 0.22
903 31 0.03
904 1 0.00
905 360 0.36
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
CCCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCGGAGAA
CCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGTG
ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTCTATG
CATGCCAAAAAAAAATACAAAGATCACTTCTACCAAGTTTGGGGCAAAAACACCTTTCGAAAAAA
TTTTAAAAAATCTCCAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCATGAAAATGGCAT
TGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTGCGC
ATCCCATCTCCCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCTGCTTACTTCGTCGGTTGGCT
TAGGCACACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAAGATCG
ACAACACGCAGAGGGGGACCCGACCAAGCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAG
CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
Found at i:393783 original size:312 final size:311
Alignment explanation
Indices: 393226--393827 Score: 848
Period size: 312 Copynumber: 1.9 Consensus size: 311
393216 ATCGATCCCC
* * * **
393226 GGCTTACGCATCCCGCCCCTTTGGCTGGCTGAGCGCCTGCACGTTCATTTCATGGGTTGACTTAG
1 GGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGTTCATTTCATGGGTTGACTTAG
* * * *
393291 GCATACGGAATTCATTCCCATTCTAAGCATGCGGAGTTCATTCCCAGTTTGAGATCGGACCGGAC
66 GCATACGGAATTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
*
393356 TGAGGGTTACAGCAGCACATGCTGGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGG
131 TGAGGGTTACAGCAGCACATGCTGGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGAGG
*
393421 CACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGG
196 CACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGACATTAGGGTTCCAACGATC-GGGGGG
* *
393486 CTAGGGGGTGTGCGCACATGATGTGTGATGGAAGGGGACCCGACCAATTTTT
260 CCAGGGGGTGTGCGCACATGATGTGCGATGGAAGGGGACCCGACCAATTTTT
* * **
393538 GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGCTT-GTTTTGTGGGTTGACTTA
1 GGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACG-TTCATTTCATGGGTTGACTTA
* * * * *
393602 GGGATACGGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGA
65 GGCATACGGAATTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * ** *
393667 -TCGAGGGTTCCGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGA
130 CT-GAGGGTTACAGCAGCACATGCTGGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGA
** * ** * *
393731 GGCACCATCGCCAGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCAACGATCGGGGG
194 GGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGACATTAGGGTTCCAACGATCGGGGG
393796 GCCAGGGGGTGTGCGCACATGATGTGCGATGG
259 GCCAGGGGGTGTGCGCACATGATGTGCGATGG
393828 GTGCTGGTAC
Statistics
Matches: 253, Mismatches: 35, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
311 36 0.14
312 215 0.85
313 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (311 bp):
GGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGTTCATTTCATGGGTTGACTTAG
GCATACGGAATTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
TGAGGGTTACAGCAGCACATGCTGGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGAGG
CACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGACATTAGGGTTCCAACGATCGGGGGGC
CAGGGGGTGTGCGCACATGATGTGCGATGGAAGGGGACCCGACCAATTTTT
Found at i:394540 original size:26 final size:26
Alignment explanation
Indices: 394504--394556 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
394494 GTTGACTTAG
*
394504 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
394530 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
394556 G
1 G
394557 ATCGCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:395432 original size:26 final size:26
Alignment explanation
Indices: 395402--395454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
395392 GTTGACTTAG
395402 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
395428 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
395454 G
1 G
395455 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:395786 original size:901 final size:899
Alignment explanation
Indices: 393537--400899 Score: 9493
Period size: 894 Copynumber: 8.2 Consensus size: 899
393527 GACCAATTTT
* * * *
393537 TGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGCTTGTTTTGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * ** *
393602 GGGATACGGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
* * * * * *
393667 TCGAGGGTTCCGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGAG
131 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
** * * * ** **
393732 GCACCATCGCCAGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCAACGATCGGGGGG
196 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* *
393797 CC--AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCT
261 CCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
393860 ATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAAAGAATTTGAGATTTTACAGGTTTGCT
326 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
393925 GCCAGTAAG-CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
391 GCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
393989 ACTTCGACTTTTTGGCTGAAATTTTTTT-TGCACGCCAACAAAAATACAAGGATCATGTCTACCA
455 ACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
394053 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-CAAAAAGTTTCAAAA
519 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAAA
* ** * *
394117 ATCATGAAAAATAGAAAAGGAGTTGTCTTGCCATGAAACTTAACGTGAAGGCTTAATGGACCATT
584 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
394182 GTATGAATTTACAAGTCATAAAAATTGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
649 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
394247 CCTACCACCCTCTCGATCCATGGATTGGGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGC
714 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCG-
* *
394312 CCGTCGGCCCGCTCTTTTCGTTGGTTGGCTTAGGCATACGGAA-TTCATTCCCAGTCTAAGATGA
778 CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATGA
* * * * * *
394376 GACGAGACCAAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCC
839 -ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
** * * * * * *
394438 TAACTTGCGCATCTCGCTCGTCTGGCTGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
394503 GGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GCACCAG
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGG
* * * * ** *
394567 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCTTGTGCTAGTGTTGTATTTTTCTTCATCGG
130 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
* *
394632 GGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG
* * *
394697 GGCC--AGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCC
259 GGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
394760 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
394825 CTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
394890 CACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
394955 AATTTGGGGCCAAAAATCCTTCCGAATAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAA
519 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAAA
* *
395020 ATCATGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
584 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
395085 GTTTTAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGGCTAAACCCA
649 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
395150 CCTACCACCCTGTCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCATAGTTCCCGCCCGC
714 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGC
* * *
395215 CCGCCCGCTCGTTTCGTCGATTTGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGAACCA
779 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TGAACCA
* * * * * * * *
395280 GACCGAGGGTTGCGGTAGTAAGATCGACAGCATGCAGCGGAGGACTCGACCGATCCC
843 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * * * *
395337 TGGCTTGC-CATCCCGCCCCTTTGGCCGGCTGAGCGCACACACGCTCGTTTCATAGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
395401 GGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGG
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GG
* ** * **
395466 CCCGAGCATTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGG
130 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
*
395531 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCTGCGATCGGGGG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
* **
395596 GCTGGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGATCTTATATTGGCCCC
260 GCCGGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
395661 CTATCCCTCATCAAGCCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
395726 CTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
395791 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAACGTCTACCA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * *
395856 AGTTTGGGGCC-AAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCACAAACTTTCCAC
519 AGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAA
*
395920 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * ** * ** *
395985 TGTATGAATTTACAGGCCATAAAATTGGCATTGGCACGTGGAAATGTGAAGATGTGTATAAACTC
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
396050 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAG-T-------G
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCG
* * * * * * * *
396107 CCCGCCTGCTCGTTTCGTCGATTGGTTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
778 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGAACCA
* * ** *
396172 GAACCGAGGGTTACGACAGTAGGATCGGCAGCACATAGAGGGGGACCCGATCAATCACC
843 G-ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC-CC
* * * * *
396231 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCCCGTTTCGTAGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
396295 GGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
* * * * *
396360 CCGAGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGG
131 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
* * *
396425 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTTGGGGTTCCGGCGATCGGGGG
196 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCA-TTGGGGTTCCGGCGATCGGGGG
* *
396490 GTC---GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
260 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
396552 TATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
325 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
396617 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAC
390 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
396682 ACTTCAAGATTTTAGCTGAATGTGTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAA
455 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
396747 GTTTGGGGCC-AAAATACCTT-CGTAAAAAATTTTAAAAAATCCCGAACCGCAAAAAACTTTCAA
520 GTTTGGGGCCAAAAAT-CCTTCCG-AAAAAATTTTAAAAAATCCCGAACCTC-AAAAACTTTCAA
* * **
396810 AAATCATGAAAAATAGAAAACGAGTCGTTTTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCA
582 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
396875 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
396940 CACCTACCACCCTATCGATCCATGTG-TTGCGCATCCCATCTCTCTGGCCG--GT-G-T--AG--
712 CACCTACCACCCTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCC
* * * * * *
396996 TGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
776 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-GAA
* * * * * ** * * *
397061 CCAGACTGATGGTTGTGGTAGTAGGATCGGGAGCACATAGAGGGGGACCCTACCGATCTC
840 CCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * ** * *
397121 -GACTTGTGCATCCCACCTTTCTGGCCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
397185 GGCATACGGAATCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATC-GAACCAG
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGG
* * * *
397249 ACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGA
130 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
* * *
397314 GGCACCATCATCGGAGCATTGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG
**
397379 GGCCGGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
259 GGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
397444 CTATCACTTATCAAACCTCGAGAACTCGCACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
397509 TTGCCAATAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
397574 GACTTCGAGTTTTTCGCTGAATTTTTTTGCTGCATGCCAACAAAAAAACAAGGATCACGTCTACC
454 CACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
397639 AAGTTTAGGGCCAAAAATCCGTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAACTTTCAAA
518 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAA
*
397704 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
397769 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
397834 ACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCG
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----TCCCG
* * * *
397899 CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
774 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGA
* * * * **
397964 GACCCGATCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCC
839 -ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
** * * * *
398026 CAGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCTTTTTGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
398091 GGCATACGGAGTTCATGCCCAGTCTAAGCATACGGAGTTGATTCCCAATCTAAGATCAGATCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
* * * * * * *
398156 CCAAGGGTTTCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCGTATTTTTTCTTTGTCGG
131 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-TTTTTCTTCGTCGG
* * * *
398221 GGCA-C--CATC---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTTCGACGACCGAGCG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGG
* * **
398275 GGCCGTAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTG
259 GGCCG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
398340 CCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
323 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
398405 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC---A------
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
398461 A-A-----A-----T--C---------TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
453 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * *
398504 AAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCAAACCGT-AAAAAGTTTCAA
518 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAACTTTCAA
* * *
398568 AAATTATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
582 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
398633 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
398698 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCAT
712 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCC--C--
* *
398763 GCCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATT
773 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-T
* ** * ** * * * * * *
398828 GGACTGGACTGACAGTTGCGGTAATCGGATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCC
837 GAACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * *
398891 CGGCTTGTGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
398956 GGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGA-CAGG
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GG
* * **
399020 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTCCTGGTGCCACATTTTTCTTCGTCGG
130 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
* * * *
399085 GGCACCATCGTCGGAGCATTGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG
* *
399150 GGCCGGGAGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
259 GGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
399215 CTATCACTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * * *
399280 CTGCCAATAGCTATTAAAATGTCTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATATTGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** * * * *
399345 GACTTCGAGTTTTCGGCTGAATTGTTTTCTGCATGCCAACAAAAAAACAAGGATCATGTCTACCA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
399410 AGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATTCCGAACCGCAAAAACTTTCAAAA
519 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAAA
* *
399475 ATCATGAAAAATAGAAAACGAGTCATCTTGCCAGGAAAATTCACGTGAAGGCTTAAGGGACCATT
584 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * ** * *
399540 GTATGAATTTACAAGCCATAAAAATTGCTTTGGCACACAAAAATATAAAGATGTGCCTAAACCCA
649 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
399605 CCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGC
714 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----TCCCGC
* * * * *
399670 CCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG
775 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGA-
* * * * * *
399735 ACCCGACTGAGGGTTGTGGCAGCAGGATCGGCAGTACGCAGAGGGGGACCCGGTCGATCCAC
839 ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-C
* *
399797 -AGCTTGCGCATCCCACCCCTCTGGCCGACTGTGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
399861 GGCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
* * * * * *
399926 TCGAGGGTTTCGGCAGCACATGGTAGGCTAGGGCATGTGCTGGTGCCGTATTTTTCTTTG-CTGG
131 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GG
* * ** *
399990 GGCA-C--CATC---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTCCAACGATTGGGCG
195 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-G
* **
400044 GGCCGGAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTG
259 GGCCGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
400109 CCTATCTCTTATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
323 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
400174 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
400239 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACC
453 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * * * *
400304 AAGTTCAGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCCCAAACCGT-AAATAGTTTCAA
518 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAACTTTCAA
* ** *
400368 AAATTATGAAAAATAG-AAATTAGTCATCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
582 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
400432 CTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGTATAAATATGAAGATGTGCCTAAACC
647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
400497 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCAC
712 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---T-CCC
*
400562 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATT
773 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-T
* ** * * *** * * *
400627 GGACTGGACTGACGGTTGCGGCAACCGAATTGGCAGCACGCAGAGGGAGACCC-AGTCGATCCC
837 GAACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCC
* *
400690 TGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
1 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
400755 GGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
** * * * **
400820 TTGAGGGTTGA-GGTAGCCCATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTTAG
131 CCGAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
*
400884 GGCACCATCACCGGAG
195 GGCACCATCATCGGAG
400900 AACCTGACTG
Statistics
Matches: 5671, Mismatches: 666, Indels: 251
0.86 0.10 0.04
Matches are distributed among these distances:
861 2 0.00
863 1 0.00
864 18 0.00
865 524 0.09
866 5 0.00
867 3 0.00
870 1 0.00
872 1 0.00
874 165 0.03
875 42 0.01
876 1 0.00
877 2 0.00
882 1 0.00
883 1 0.00
884 1 0.00
887 1 0.00
888 3 0.00
889 22 0.00
890 490 0.09
891 274 0.05
892 9 0.00
893 584 0.10
894 683 0.12
895 308 0.05
896 44 0.01
897 168 0.03
898 112 0.02
899 216 0.04
900 17 0.00
901 677 0.12
902 284 0.05
903 189 0.03
904 7 0.00
905 642 0.11
906 153 0.03
907 18 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
CCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAACTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGAACCAGAC
CGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
Found at i:396332 original size:26 final size:26
Alignment explanation
Indices: 396296--396348 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
396286 GTTGACTTAG
396296 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
396322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
396348 G
1 G
396349 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:398128 original size:26 final size:26
Alignment explanation
Indices: 398092--398144 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
398082 GTTGACTTAG
*
398092 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
* *
398118 GCATACGGAGTTGATTCCCAATCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
398144 G
1 G
398145 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAATCTAA
Found at i:399899 original size:26 final size:26
Alignment explanation
Indices: 399863--399913 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
399853 TTGACTTAGG
399863 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
399889 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
399914 GATCAAATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:400708 original size:894 final size:890
Alignment explanation
Indices: 398466--400958 Score: 3689
Period size: 905 Copynumber: 2.8 Consensus size: 890
398456 TCACAAAATC
398466 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
*
398531 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
66 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAT
398596 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
131 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-
*
398661 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
195 GCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
398726 GCGCATCCTGTCTCTCTGGTCGACGTAGTGCCTGCATGCCTGCCCGCCCGCTCGTTTTGTCGGTT
260 GCGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * *
398791 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACAGTTGCGGTAATCGG
325 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGCAACCGG
398856 ATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGAC
390 ATTGGCAGCACGCAGAGGGAGACCCGGTCGAT-CCCGGCTTGTGCATCCCACCCCTCTGGCCGAC
* * * *
398921 TGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCA
454 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
398986 TACGGAGTTCATTCCCAGTCCAAGATCGGA-CAGGACCGAGGGTTACGGCAGCACATGCTGGGCT
519 TACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTACGGCAGCACATGCTGGGCT
* **
399050 CGAGCATGTCCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCAGAGAAC
583 CGAGCATGTGCTGGTGCCGTATTTTTCTTCGT-GGGGCACCATCGT-----C---G---GAGAAC
* *
399115 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCAAATGATGTGC
636 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGC
*
399180 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCGAGAACTCACA
700 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCAAGAACTCACA
*
399245 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAATGTCTGAAATG
765 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATG
* * *
399310 GGGACATTTTTTTCAAACGGTCACAAAATATTGTAGACTTCGAGTTTTCGGCTGAATTGTT
830 GGGACACTTTTTTCAAACGGTCACAAAATATTGTACACTTCGAGTTTTCAGCTGAATTGTT
* * * ** * *
399371 TTCTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
* * * * * *
399436 AAAATTTTAAAAAATTCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
66 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAT
* * *
399501 CTTGCCAGGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATT
131 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-T
* *** *
399566 GCTTTGGCACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
195 GCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * *
399631 ACACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCATCGGTT
260 GCGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * ** ** * * * *
399696 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCCGACTGAGGGTTGTGGCAGCAGG
325 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGCAACCGG
* * * * *
399761 ATCGGCAGTACGCAGAGGGGGACCCGGTCGATCCACAGCTTGCGCATCCCACCCCTCTGGCCGAC
390 ATTGGCAGCACGCAGAGGGAGACCCGGTCGATCC-CGGCTTGTGCATCCCACCCCTCTGGCCGAC
* *
399826 TGTGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCA
454 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
399891 TACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTTCGGCAGCACATGGTAGGCTA
519 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTC
* * * *
399956 GGGCATGTGCTGGTGCCGTATTTTTCTTTGCTGGGGCACCATCGTCGGAGAACCTGACCGGCGAC
584 GAGCATGTGCTGGTGCCGTATTTTTCTTCG-TGGGGCACCATCGTCGGAGAACCTGACCGACGGC
* * *
400021 ATTGGGGTTCCAACGATTGGGCGGGCCGGAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTG
648 ATTGGGGTTCCGACGATCGGGGGGGCCGG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
** * *
400086 GTACTTGGCCCTTATATTGGCTGCCTATCTCTTATCAAATCTCAAGAACTCACACCCCCTTAAAG
711 GTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCAAGAACTCACACCCCCTTAAAG
* * *
400151 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
776 AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGACACTTTT
* * * *
400216 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
841 TTCAAACGGTCACAAAATATTGTACACTTCGAGTTTTCAGCTGAATTGTT
* *
400266 TTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTCAGGGCCAAAACTCCTTCCAAA
1 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
* **
400331 AAAATTTTCAAAAATCCCAAACCGTAAATAGTTTCAAAAATTATGAAAAATAG-AAATTAGTCAT
66 AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAT
*
400395 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
131 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
400460 ACATTGGCATGTATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
196 -CATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
400525 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
260 GCGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
*
400590 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGCAACCGA
325 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGCAACCGG
* *
400655 ATTGGCAGCACGCAGAGGGAGACCCAGTCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGGC
390 ATTGGCAGCACGCAGAGGGAGACCCGGTCGATCCC-GGCTTGTGCATCCCACCCCTCTGGCCGAC
*
400720 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
454 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
400785 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGA-GGTAGCCCATGCTGGGCT
519 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT-ACGGCAGCACATGCTGGGCT
* ** *
400849 CGAGCATGTGCTGGTGCCGTATTTTTCTTCGTTAGGGCACCATCACCGGAGAACCTGACTGACGG
583 CGAGCATGTGCTGGTGCCGTATTTTTCTTCG-TGGGGCACCATCGTCGGAGAACCTGACCGACGG
* *
400914 CATTGGGATTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
647 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
400959 TGCAATTTTT
Statistics
Matches: 1405, Mismatches: 174, Indels: 32
0.87 0.11 0.02
Matches are distributed among these distances:
891 13 0.01
892 3 0.00
893 4 0.00
894 532 0.38
895 297 0.21
897 1 0.00
900 1 0.00
904 2 0.00
905 549 0.39
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAA
AAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAT
CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
CATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCGGTTG
GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGACGGTTGCGGCAACCGGA
TTGGCAGCACGCAGAGGGAGACCCGGTCGATCCCGGCTTGTGCATCCCACCCCTCTGGCCGACTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCGTATTTTTCTTCGTGGGGCACCATCGTCGGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAA
ACGGTCACAAAATATTGTACACTTCGAGTTTTCAGCTGAATTGTT
Found at i:400792 original size:26 final size:26
Alignment explanation
Indices: 400756--400808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
400746 GTTGACTTAG
*
400756 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
400782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
400808 G
1 G
400809 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:402415 original size:26 final size:26
Alignment explanation
Indices: 402379--402430 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
402369 TTGACTTAGT
* *
402379 CATATGGAGTTCATTCCCAGTTTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
402405 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
402431 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:403060 original size:4 final size:4
Alignment explanation
Indices: 403046--403075 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
403036 CGTAGTGCTA
*
403046 GCCC ACCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
403076 TCGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.73, G:0.23, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:403286 original size:26 final size:26
Alignment explanation
Indices: 403256--403308 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
403246 GTCGACTTAG
403256 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
403282 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
403308 G
1 G
403309 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:404185 original size:26 final size:26
Alignment explanation
Indices: 404149--404201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
404139 GTTGACTTAG
* *
404149 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
404175 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
404201 G
1 G
404202 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:405058 original size:895 final size:893
Alignment explanation
Indices: 402843--405441 Score: 3498
Period size: 895 Copynumber: 2.9 Consensus size: 893
402833 ATTCCTTCCG
* * *
402843 AAAAAATTTTAAAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCAATGAAACTTCACGCGAAG
1 AAAAAGTTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
* *
402908 GCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAACTATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
*
402972 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--C
* * * *
403037 GTAGTGCTAGCCCACCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTAAGGCATA
193 G-A---C-A---TA-------G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * *
403102 CGTAGTTCATTCCCAGTCTAAGATCAGACCGAACTG-AGCGTTACAGTAGCAGGATTGACAGCAC
241 CGGAGTTCATTCCCAGTCTAAGATCTGACTGGACTGAAG-GTTACAGTAGCAGGATTGACAGCAC
* * * * * * *
403166 GTAGAGGGGGACCCAGCCAATGCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCG
305 GCAGAGGGGGACCCGGCCGAT-CCTCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
* * * *
403230 AACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
369 AACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTC
* * * * * *
403295 ATTCTCAGTCTAAGATCGGATCGAACCGCGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTTC
433 ATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTAC
*
403360 TGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCAG
497 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGGCAG
* * *
403425 CATTGGGGTTCCAGCGATCA-GGGGG-CGGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGT
561 CATTGGGGTTCCAACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
403488 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACACGCCCTTAAAGAG
626 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAG
* *
403553 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTT
691 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
403618 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCAAGCCAAAAAA
756 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAA
* * * * *
403683 AATATAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
821 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
*
403748 CAAACCGT
886 CAAACCAT
** * *
403756 AAAAAG-TTTCCAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
1 AAAAAGTTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
* *
403820 GCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAA-AAATAGGAA
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATATGAA
* * *
403884 GATATGCCAAAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
403949 CGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
195 CATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
404014 AAGAT-TGGA-TAGGACTGAGGGTTACGGTAACAGGATTGGCAGCACGCAGAAGGGGAACCGGCC
260 AAGATCT-GACT-GGACTGAAGGTTACAGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGGCC
* * * *
404077 GATTCC-C-AGCTTGCGCGTCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTTAATTCGTGGG
323 GA-TCCTCGA-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCATTTCGTGGG
*
404140 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
386 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATC
* * * *
404205 AGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCATGCATGTGCTGGTGCCGCATTTTTCT
450 GGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTACTGGTGCCGCATTTTTCT
* * * *
404270 TCACCGGGGCACCATCGTCAGAGCTTTGTCGGAGAACCTGATCGACAGCATTGGGGTTCCAACGA
514 TCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGGCAGCATTGGGGTTCCAACGA
* **
404335 TCAGGGGGGCCGGGGGG-GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAAGG
578 TCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
404399 GCCCCTTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAG
643 GCCCCTTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
404464 GTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
708 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
404529 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATT
773 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACATC
*
404594 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCAT
838 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCAT
* * * * *
404650 AATAAGTTTTGAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
1 AAAAAGTTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
***
404715 GCTTAAGGGACCATTGTATGAATTTACAAGTTGTAAAAATGGCATTGGCATGAAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
* * *
404780 ATGTGCCTAAACCCACCTATCACTCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGAC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
404845 ATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
196 ATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
404910 AGATCTGACTGGACTGAAGGTTGCAGTAGCAAGATCGACAGCACACAGAGGGGGACCCGGTCGAT
261 AGATCTGACTGGACTGAAGGTTACAGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGGCCGAT
* ** * * * *
404975 CCTCGACTTACGCATCCTACCCCTCTGGCTGGCTGAACGCCCGTACGCTCCTTTCGTGGATTGAC
326 CCTCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGAC
* *
405040 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAATCTAAGATCGGACT
391 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGAC-
* * ** * * *
405105 GGACCGAGGGTTACGGCAGCACATGCTATGCCCGGGCTTGTACTGGTGCCGCATTTTTCTTCACC
454 CGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTACTGGTGCCGCATTTTTCTTCACC
* * * *
405170 GGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGG
519 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC-GGCAGCATTGGGGTTCCAACGATCAGG
*
405235 GGGGCCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTAT
583 GGGG-C--------CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
405300 ATTGGCCTCC-TATCCCTTATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTTGAGATTT
639 ATTGGCC-CCTTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
405364 TACAAGTTTGCTGCCAGTAGCGATTAAAGTGTCT-AGAATGGGGATAATTTTTTCAAATGGTCAC
703 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCAC
*
405428 AAAATCTCGTACAC
767 AAAATCTTGTACAC
405442 CAAGTTTGGG
Statistics
Matches: 1490, Mismatches: 164, Indels: 72
0.86 0.10 0.04
Matches are distributed among these distances:
893 327 0.22
894 297 0.20
895 509 0.34
896 4 0.00
902 1 0.00
904 8 0.01
905 165 0.11
906 3 0.00
909 1 0.00
910 2 0.00
912 57 0.04
913 115 0.08
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
AAAAAGTTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
ATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCTGACTGGACTGAAGGTTACAGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGGCCGAT
CCTCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTACTGGTGCCGCATTTTTCTTCACCGG
GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGCAGCATTGGGGTTCCAACGATCAGGGGG
GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
TCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGT
TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCAT
Found at i:405076 original size:26 final size:26
Alignment explanation
Indices: 405047--405096 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
405037 GACTTAGGCA
* *
405047 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAATCTAAGCG
405073 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
405097 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCG
Found at i:405773 original size:26 final size:26
Alignment explanation
Indices: 405737--405789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
405727 ATTGGCTTCG
*
405737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
405763 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
405789 G
1 G
405790 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:406672 original size:26 final size:25
Alignment explanation
Indices: 406636--406687 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
406626 GTTGACTTAG
406636 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTC-TTCCCAGTCTAA
* * *
406662 GCATACGGAGTTCTTTCTAGTCTAA
1 GCATACAGAGTTCTTCCCAGTCTAA
406687 G
1 G
406688 ATTAGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCTTCCCAGTCTAA
Found at i:407522 original size:26 final size:26
Alignment explanation
Indices: 407489--407544 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
407479 TGGGTTGACT
* *
407489 TAAGCATAAGGAGTTCATTCCCAGTC
1 TAAGCATAAGAAGTTCATTCCCAATC
*
407515 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATAAGAAGTTCATTCCCAATC
407541 TAAG
1 TAAG
407545 ATTGGATCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATAAGAAGTTCATTCCCAATC
Found at i:409354 original size:159 final size:159
Alignment explanation
Indices: 409065--409459 Score: 483
Period size: 159 Copynumber: 2.5 Consensus size: 159
409055 GTAGTGCCCG
* ** * * ** *
409065 CCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAAGTCTAAGATTGGAC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGACCGAAC
* * *
409129 CAGACTGAGGGTTGCGGTAGTCGGATCGAGAGCACGCAGAGGGGCACCCGACCGATCCCCGACTT
66 CAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGCACCCGACCGATCCCCGACTT
*
409194 GCGCATCC-CACCTCTCTGGTCGGCTGAGCA
131 GCGCATCCGC-CCT-TCTGGCCGGCTGAGCA
*
409224 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-TCTAATACCGAAC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGACCGAAC
* * * * * * *
409288 CAGACCGAGTGTTGCGGTAGTAGGATCGACAGCATGCGGAGGGGGACCCGATCGATCTCCGGCTT
66 CAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGCACCCGACCGATCCCCGACTT
*
409353 GCGCATCCTGCCCTTCTGGCCGGCTGAGCG
131 GCGCATCC-GCCCTTCTGGCCGGCTGAGCA
* * * * * *
409383 CCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCC-AGTCTGAGATCGGAC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGACCGAAC
*
409447 CGGACCGAGGGTT
66 CAGACCGAGGGTT
409460 ACGGCAGCAG
Statistics
Matches: 202, Mismatches: 30, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
158 1 0.00
159 193 0.96
160 7 0.03
161 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGACCGAAC
CAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGCACCCGACCGATCCCCGACTT
GCGCATCCGCCCTTCTGGCCGGCTGAGCA
Found at i:412105 original size:26 final size:26
Alignment explanation
Indices: 412076--412128 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
412066 GTTGACTTAG
* *
412076 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTAACTCCCAGTCTAA
* *
412102 GCATACGAAGTTAATTCTCAGTCTAA
1 GCATACGAAGTTAACTCCCAGTCTAA
412128 G
1 G
412129 ATCCGACCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAACTCCCAGTCTAA
Found at i:413012 original size:26 final size:26
Alignment explanation
Indices: 412976--413026 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
412966 TGACTTAGGC
412976 ATACGGAGTTCATTCCCAATCTAAGG
1 ATACGGAGTTCATTCCCAATCTAAGG
*
413002 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
413027 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGG
Found at i:413567 original size:898 final size:895
Alignment explanation
Indices: 409413--427999 Score: 17211
Period size: 898 Copynumber: 20.6 Consensus size: 895
409403 GTTGACTTAG
* * * * *
409413 GCATATGGAGTTCATTCCCAGTCTGAGATCGGACCGGACCGAGGGTTACGGCAGCAGATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
409478 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
409543 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
409608 GATGGGTGCTGGTACTTGGCCTTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
409673 CGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
409738 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
409803 GCATGCCAAGAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
* * * *
409868 TTTAAAAAATTCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
409933 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
409998 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCGCGGCTTGCGTA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
410063 TCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGCCCGCTCGTTTCGTCGGTTGGCTT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C--GCCCGCTCGTTTCGTCGGTTGGCTT
* *
410128 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT---GCAGCAGCAT--G
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* ** * *
410188 CAG---G--GGGTGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCAC
776 CAGCACGCAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
410248 CCGCGCGCTCATTTCGTGGGTTGACTCAGGCTTACGGAGTTCATTCCCAGTCTAA
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
410303 GCATACAGG-GTTCATTCCTAGTCTATGCTCGGATCGGACTGAGGGTTGTGGCAGCACATGTTGG
1 GCATAC-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** *
410367 GCTCGGACATGTGCTGGTGCCACATTTTTCTTCTCCGGGGCACCATGGTTGAAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** * * * *
410432 AACCTGACCGACAACATTGAGGATCCGACGATCGGGAGGCCGAGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
410497 GATGGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
410562 CCCCCTTGAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTAAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * * *
410627 GGGACAGTTTTTTCAAATGGTCATAAAATCTTGTACATTTTGAGTTTTTAGCTAAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
410692 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * *** *
410757 TTTTAAAAAATCCCGAAGCGCAAAAAGTTTCGAAAATCCCAAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
410822 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
410887 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
410952 ATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCTGCCCGCCCGTCCGATCGTTTCGTCGGTTAGC
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCCGCCCG--C--TCGTTTCGTCGGTTGGC
*
411017 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* **
411082 GGCAGCACGCAGAGGGGGCCCCGACCGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGCCTACTG
774 GGCAGCACGC--AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTG
* *
411146 AGCGGCTGCACGCTCG-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
411205 GC-TACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGATAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * *
411269 CTCGGGCATGTGTTGGTATCGTATTTTTCAGCCCCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * **
411334 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGTTGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
411399 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCAATCCCTCATCAAAGCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
411464 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
411529 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * *
411594 CATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCGAAGCCAAAACACCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAT
*
411659 TTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
411724 CATGAAACTTCAAGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
411789 GGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * *
411854 TCCTATCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTCAGGC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *** * * *
411919 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTATAGCAGCAAGATCAGCAAC
715 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
** * * * **
411984 ACGCAGAGGGGGATTCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAATGCCC
780 ACGC--AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
412049 GCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
412102 GCATACGAAGTTAATTCTCAGTCTAAGATCCGACCTGACAGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
412167 GTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGTAATATCGCCAGAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
412232 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGTGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
*
412297 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
412362 ACCCCCTTAAA-ATGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCCGGAA
259 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
412426 TGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
412491 GTGCATGCCAACAAAAATACAAGGATCACGCCTACAAAGTTTGGGACCAAAATTCCTTGCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
412556 ATTTTAAAAAATCCCGAACCGCAAAACA-TTTCGAAAATCATGAAAAATAAAAAACGAGTCGCCC
453 ATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
412620 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
412685 ATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
412750 GCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** *
412815 GGTATACGGAGTTCATTCCCAATCTAAGATAAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * * ** *
412880 AGTGCGTACGGGGGACCCGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGC
777 AGCACGCA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* *
412945 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
413000 GGATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
413065 CTCGGGCATGTACTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
413130 ACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGCACCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGC
*
413195 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
413260 CCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCAACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
413325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
413390 GCATACCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGAACAAAACTCCTTCCAAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-
*** * * * *
413455 TTTTAAAAAATATTGAACCGCAAAAAGTTTTAAGAATCATGAAAAATAGAAAACGAGTCATCTGG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
413520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * ** *
413585 TGGCATGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATTCATAGCTTGTGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
413650 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGTCCACCCGCCAACTCATTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
413715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGATTGAGGGTTGTGGCAGCAAGATCA
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
413780 GTAGCACGCAGAGAAGGG-CCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCAGGCTGGCTGA
775 GCAGCACGCAG-G--GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * *
413844 GCACCCGCACGTTCGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
413903 GGATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
413968 CTTAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTC-GGAG
** * *
414032 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGTGGGCCGGGGGGGTGTGGGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
414097 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
414162 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
414227 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
414292 TGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTTGGGCCAAACCTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * *
414357 ATTTTAAACAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
414422 GCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
518 GCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * **
414487 ATTGGCATGCAGAAATATGAAAATGTGCTTAAACCCACCTATCACACTATCGATCCACGGCAAGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
414552 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC-CTCGTTTCATCGATCGGTTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
414616 GGCATACAGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTACGGCAGCAGGATCGGC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
414681 AGCACGCAGAGGGTGACCTGGCCGATCCCCAGCTTGCGTATCCTGCCCTTTTGGTCGGCTGAGTG
777 AGCACGCAG-GGG-GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
*
414746 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * ** *
414802 GCATATTGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTTGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
414867 CTCGAGCATGTGCTGGTGCCGCTTTTTTCTTCGTCGGGGCACCAT---C---G---C-T-GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
414921 ACTTGACCGGCGGTATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGCTGTGCGCACATAATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG-TGTGCGCACATGATGT
* * * *
414986 GTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
415051 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
415116 TGGCGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTC
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
415181 ATGCGTGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCC-TCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * *
415245 AATTTTAAAAAAT-CCAAACCGCAAAAGGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
415309 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** ** * **
415374 ATTGAAACACAGAAATATGAAGATGTG------CCCACCTACCACCCTATTGATCCACGATTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
415433 ACATCCCGTCTTTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCGGTCGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *** * * *
415498 CTTATGCATA-GGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGTGGCAACAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
415562 CGACAACACGCAGAGGGGGACCCGGCCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
773 CGGCAGCACGC--AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
415627 AGCGCTCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
415687 GTATACGGAGTTCATTCACAGTCTAAGATTGGACCAGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
415752 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
415817 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
415882 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTCGCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
415947 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
416012 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAA-TTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
416076 GCATGCCAACAAAAAAAAAAGGATCACGTCTAACAAGTTTGGGGTGAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * * * * *
416141 TTTTTAGAGATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
416206 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
416271 TGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
416336 ATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGCTAGTTTCGTCGGTTGGCTTAGG
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
416401 GATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGATGGTTGTGGCAGCAGGATCGGTAG
714 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * ** * * *
416466 CACGGAGAGTGGGAACCGGTCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGTC
779 CACGCAG-G-GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
*
416531 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
416581 -C-TA---AG---------A---T----T-GGACCAGACCGAGGGTTGCGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
416624 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACTATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
416689 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
416754 ATGGGTGCTGGT-CTTGGTCCTTATATTGGCCCTCTAACCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
416818 CACCTTAAAGAGCATCTGAGATTTTATAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
416883 GGACACTTTTTTCCAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
416948 CATGGCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT-ATTCCTGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC--AAAAAA
* * * * *
417012 TTTTCAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACCAGTCGCCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
417077 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
417142 TGG--TGCGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATTGATCCATGGCTTGA
584 TGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
417205 ACATCCCATCTCTCTGGCAGGTGTAGTGCCTGCCCATCCGCCCGCCCGCTCGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC--CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * **
417270 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCC-GACCGAGGGTTGCGGCAGCAGGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCGGACCGAGGGTTGCGGCAGCAGGA
** * * * *
417334 TCGGCAGCACGCAGAATAGGATCGGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
772 TCGGCAGCACGCAG--GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
*
417399 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAA
835 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAA
** * * * *** *
417460 GCATATAGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCAATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
417525 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATTGCCGGAGAATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
417590 ACCTGACTGGCGGCATTGTGGTTCCGGCGATTGGGGGGGTCAGGGGGTGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGG-C-CGGGG-GGTGTGCGCACATGATG
417655 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
417720 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
417785 ATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATATTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
417850 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
* ** * *
417915 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAACAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** *
417980 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTGTATGAATTTACAAGACATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
418045 CATTGGCACACAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * * *
418110 CGCATCCCGTCTCTTTGGCCGGCGCAGTGCCCATCCGCCCGTCCTCTTGTTTCATCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *** * * *
418175 AGGCACATGGAGTTCATTCCTAGTCTAAGATCAAACGGGACCGAGGGTTGCGGTAGCAGGATCGA
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
418240 CAGCACAGAAAGGGGGACCTGATCGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
776 CAGCAC-G-CAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * *
418305 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTGTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** **
418362 GCATACGGAGTTCATTCCCAATCTAAGATTGGATTGGACCGAGGGTTGCGGCAGCATGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
418427 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
418492 ACCTAACCGGCAGCATTGGGGTTCCGACGTTTGGGGGGCCGGGGGGTGTGCGCACATGTTGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
418557 ATTGGTGATGGTACTTGGCCCTTAGATTGGCTCCCTATCCCTCATCAAACC-CTGAGAACTCACA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACA
*
418621 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AAT
* * *
418685 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
418750 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* ** * *
418815 ATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
418880 GCCAT-AATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 GCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
418944 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCATGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
419009 GCATCCCGTCTCTCTTGTCGGCGTAGT----GCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* **** * * * *
419070 GGCATACGGAGTTCATTCCCAGTCTAAGCA-T--A-C-GA-AGTTCATTCCCG-ATCTAAGATCA
712 GGCATACGGAGTTCATTCCCAGTCTAAG-ATTGGACCGGACCGAGGGTTGCGGCAGC-AGGATC-
* * * ** * * ** * * * ** * **
419128 GACTG-ACCCGAGGGTTA-CGGTAGCAC-ATGCTAGGCTCGGGCATGTGCAGGTGCCATATTTTT
774 GGCAGCACGC-AGGGGGACCCG-A-C-CGATCCCCGGCTTGCGCA--T-C--CTGCC-CCTCTGG
** * * * * ** * * * ** * * *
419190 CTTCATCGGGGCACCATCGCAGGAGCATCATCG-GAGAACTTGACCGACGGCAT-TGGGGTTC-C
829 C--CGGCTGAGCGCC--CGCACGCTCGT-TTCGTG-G--GTTGACTTA-GGCATACGGAGTTCAT
** * **
419252 GACGA-TCGGA
885 TCCCAGTCTAA
** * * * * * * * *** * * ** *
419262 GGGTCAGGGGGGT--TT-GC-GT-AAATGAT-GTA-C--ACTTCGA-GTTTTTAGCTGAATTTTT
1 GCAT-ACGGAGTTCATTCCCAGTCTAA-GATCGGACCGGAC--CGAGGGTTGCGGCAGCA-CATG
* * *** ** * * * ** * * **
419317 TTGTGCATGCCATCAAAAATACAAGGAT-CACG--TCTACCAAGTTTG--GGGCCAAAACTC-CT
61 CTGGGC-T-CGGGC--ATGTGC-TGG-TGC-CGCATTTTTC---TTCGCCGGGGCACCA-TCGC-
* * ** *** * ** * * * **** * * ** *** ***
419376 TCTGAACA-AATTTAAAAAAAT-CCCGAACAGCA-AAAAGTTTCAAAAATCGTGAAAAATAGAAA
114 -CGGAGCATCGTCGGAGAACCTGACCG-GCGGCATTGGGGTTCCGACGATCG-G----GGGGCCG
** * ** * ** * ** ** **
419438 ACGAGTCGT-CTTACCGTGAAACTTC-A--GGTGAAGG--CTTAAGGGACAATTGTATGAATTTA
172 GGGGGT-GTGCGCA-CATG-ATGTGCGATGGGTGCTGGTACTT---GG-C-CCT-TAT--ATTGG
* ** ** * * ** * ** *
419497 CAAGCTATAAAAATGGCATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACC-T-ACCAC
226 C--CCCCT----AT--CCCT--CAT-CA-AACCT-CG-AGAACT--C-ACACCC-CCTTAAAGAG
* * * ** * ** * ***** * * ***
419559 CCTAT-CGA-TCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCC
273 CATTTGAGATTTTACAGG-TT-TGC-T---G-C-CAGTAGCCATTAAAGTGTCTG---AAATG--
* ** * ** ** ** ** ** * * * *
419621 CGCCCGCTAGTTTC--ATCGGTTGGCTTAGGGATACGGAGTTTATTTCTAGTCTAAGATCAGACT
325 GGGACACTTTTTTCAAAT-GG-T--CACA-AAAT-C-TTGTACACTTCGAGT-T---TTTAG-CT
** * ** **** * * ** * * ***
419684 GGACCGATGGTTGTG-GCA-G-CAGGATCGGTAGCACGGA-GA-GTGGGACCCAG-TCGATCCCC
378 -GA---ATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGT-CTACCAAGTTTG-GGGCC
* ** * **** ** ** * ** *
419743 TTAAAGAC-CATT---TGAGATTTTACAGGTTTGCTGCCAGTGGCC-CTTAAAGTGTCTGAAATG
436 --AAA-ACTCCTTCCAAAAAATTTTA-AAAAAT-C--CC-G-AACCGCAAAAAGTTTCAAAAATC
** *** *** * * **** * * * **
419803 GGGACACTTTTTTCAAATG-GTC-ACAAAATCTTGTACACTTCAGGTTTTTA-GCTT-A---A-C
492 ATGA-A-AAATAGAAAACGAGTCGTC-TTGCCATG-AAACTTCACG--TGAAGGCTTAAGGGACC
* * * * * ** ** * *
419860 -TT-T-T---TTGTGCATGCCAACAAAAAT-ACA-AGG-AT-CACG-TCTACCAAGTTTGGGGCC
551 ATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATGCA-GAAATATGAAG-AT-GTGCC
* * ** ** *** *** * **** * ******
419914 AAAAATCCTTCTGAAAAGAATTTAAAAAATCC-CGAAC---CGCAAAAAGTTTCAAAAATCGTGA
611 -TAAACCCACCT---ACCACCCT-ATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCG-G-
** **** ** ** * ** * * ** * *
419975 AAAATAGAAAACGAGTCGTCTTGCCATGAAAC--TTC-ACTTGAAGGCTTAGGGGACCAT-TGTA
668 --CGTAGTGCCCG-CCCG-CCCGCC-CG-CTCGTTTCGTC-GGTTGGCTTA--GG--CATACGGA
** * * * * * ** * *** ** * * * *
420036 -TGAATTTACAAGCCGTAAAAATGGCATTGG-CATGCAGAAAT-ATGAAG-ATG-T-GCCTA-AA
722 GTTCA-TTCCCAGTC-TAAGATTGG-ACCGGAC-CG-AGGGTTGCGGCAGCAGGATCGGC-AGCA
* ***** * * * * * * * * *
420094 CCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
781 CGCA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG--G--CTG--AG-
* * *
420159 CCGCCCGCCCGCTAGTTTCGTCGGTTCG-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 -CGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
420218 G-ATTCGACCGGA--TCGAGGGTTGCGGCAGCAAGATC-AGCAGGATGCAGAGAAGGGCCCGACC
1 GCA-T--A-CGGAGTTC-A---TT-C--C--C-AG-TCTA--A-GAT-C-G-GACCGGACCGA-G
* ** * * * * * ** * * *** **
420279 GATCCCTAGCTTGCGCATCCCGCCCCTCTGGCA--TGCTGAGCGCCCGCA-CGCTCATTTCG-TA
44 GGTTGC-GGC-AGCACATGCTG-GGCTCGGGCATGTGCTG-GTG-CCGCATTTTTC--TTCGCCG
** * * * * * * * * ***
420340 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTC-TA-ATCAT-A-CGGAGTTCATTTCCAG-T-
102 GGGCACCAT-CGC---CGGAG--CA-T--C-GTCGGAGAACCTGACCGGCG-GCA-TTGGGGTTC
* * * ** ** * * * * * * * *
420399 CTAAGATTGGACCAGATCGAGGGTTGTGGCAGCACTTGCTG-G-GCTCGG-GCAT-GTGCTGGTG
155 CGACGATCGG--GGGGCCGGGGGGTGT-GC-GCACATGATGTGCGATGGGTGC-TGGTACTTG-G
* * *** * * * * ** **
420460 CCGCATTTTTCTTCACCGGGGGACC-AT-CGTCGGAGCATCACC-GGAGAAC-CTGACCGGC---
214 CC-C--TTATATT-----GGCCCCCTATCCCTC--ATCA-AACCTCGAGAACTCACACCCCCTTA
* * * * *** * ** * *
420518 --GA-CA-TTGGGGTTCTGGCGATCGGGGGGGCCGGGCGGTGTATGCACACGATGTGCGAAGGGT
268 AAGAGCATTTGAGATT-T---TA-CAGGTTTG-C-TGC-CAGTA-G--C-C-AT-T--AAAGTGT
* * * ** **** * ** * * * **
420579 GCTGGTACTTGGCCCTTACATTCGCCCCATATCCCTCATC-AAACCTTG-AGAACTCACGCCCCC
317 -CT-GAAATGGGGAC--AC-TT-TTTTCAAAT-GGTCA-CAAAATCTTGTA-CACT-TCG---AG
*** * *
420642 TTAAAGAGCATTTGAGATTTTACAAGTT-TGC-TGCCAGTAGCAATTAAAGTGTCTGAAATCGGG
369 TT-TTTAGC---TGA-ATTTT----TTTGTGCATGCCA--A-CAA--AAA-T-AC---AA---GG
* * * *** *
420705 A-CACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGC
412 ATCAC---GTCT--A----C-C-AAGT-TTG-GGGC--C-A------A----AA-------CT-C
* * ** * * ** * *
420769 ATGCCAAAAAA-AATAAAAGGATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAAT
443 CTTCCAAAAAATTTTAAAA-AATC----C--CGAA-----CCGCAAAAAGT--TT--C-AAAAAT
** * * ** * * **
420833 TTTAAAAAATCCCGAACCACAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTG
491 CATGAAAAAT--AG-A--A-AACGAGTCGTC-----TTGCCA---------------------TG
420897 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAA
524 -----AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A
* * * *
420962 TT-GCATGCAAAAATATGAAGATGTGCCAAAACCCAACTACCACCCTATCGATCCACAGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
421026 CATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** ** * *
421091 GCATATGGAGTTCATTCTCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGTAGCAGGATCGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
421156 GCACACAAAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
778 GCACGC--AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* *
421221 TCGCATGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A--C---
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
421256 G---A---AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGG-TGTGATAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
421313 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
421378 ACCTGACCGACGGTATTGGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGGACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
421443 GATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
421508 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
421573 GGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
421638 GCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * * *
421703 TTTAAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
421768 CCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
421833 TGGCATGCAGAATATATGAAGATGTGCCTAAACCTACCTACCACCCGATCGATCCACGGCTTGCG
584 TGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
421898 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGTTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ***
421963 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACGGAGGGTAATGGCAGCAGGATCGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
422028 GCGTACAGC-GGGGGACCGGATCGATCCCCGGCTTGCGTAT-TTCGCCCCTCTGGTCGGTTGAGC
778 GC--AC-GCAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGC
*
422091 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
422148 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
422213 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
422278 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGTTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* * * *
422343 AATGGGAGCTGGTACTTGGCCCTTATACTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
422407 CCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCAATAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
422472 GGGGCACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
422537 GC-TCGCCAACAAAAATACAGGGATCTCATCTACCAGGTTTGGGACCAAAACTCCTTCCGAAAAA
390 GCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * ** * * *
422601 ATTTTAACAAATCGCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTTGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* **
422666 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAACATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
422731 TTGCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
422796 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCAGCCCGCTCGTTTCGTCGATTGGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * ** * * *
422861 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAAATGAGGGTTGCAGCAGTAGGATTGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
422926 GCACGCAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCGGAGCAC
778 GCACGCAG-GG-GGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
422991 CTGTACGCTCGTTTCGTGGGTTAACTTAGACATACGGAGTTCATTCCCAGTCTAA
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
423046 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
423111 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
423176 ACCTGATCGGTGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
423241 TGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * ** * * ** *
423306 ACACCCTCAAAGAGCATTTGATTTTTTACAGGTTTGCTACCAATAGCCAGGAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
423371 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
423436 TGCACGCCAACAAAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * * * *
423501 ATTTTAACAAATCCCGAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
423566 GCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
423631 TTGACACGCAGAAATATGAAGGTGTTCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
423696 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGATCGCTCGTTTCGTCAGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGC
* * *
423761 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * **
423826 AGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT-GCTCGTTTG
774 GGCAGCACG--CAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-CGGCTG
* * * * * *
423890 AGCGCCCGTATGCTCGTTTTGTGGTTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
423950 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
424015 CTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C----CATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * **
424069 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCCGAAAGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGTG
* * * * * *
424134 TGATGCGTGATGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
424199 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
424264 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * * *
424329 GTGCATGCCAACAAAAATACAACGATCATGTCTGCCAAGTTTGGGGCCAAAACACCTCCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * * * * *
424394 AAGTTTAAAAAATCTCGAATCGAAAAAAGTCTT-GAAAATCATGAAAAACAGAAAATGAGTCGTC
452 AATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
424458 TTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
424523 CATGGGCATGCAGAAATATGGAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
424588 CGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCTGCCCGACCGCTCGTTTCGTCAGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTG
* * *
424653 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * **
424718 TCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT-GCTCGTT
772 TCGGCAGCACG--CAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-CGGC
* * * * * *
424782 TGAGCGCCCGTATGCTCGTTTTGTGGTTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
834 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
424844 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
424909 CTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCGTCGGGG---CA----C----CATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * **
424963 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCCGAAAGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGTG
* * * * * *
425028 TGATGCGTGATGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
425093 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
425158 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAAATTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
425223 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAG
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
425288 TTTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 TTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
425353 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG-A
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
425417 TTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTGCCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
425482 CATCCCGTCTCTCTGGCCGACATAATGCCCGCCCGCCTGTTCGCCCGCCCGCTCGTTTCGTCAGT
648 CATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCC----CGCCCGCCCGCTCGTTTCGTCGGT
* * ** * *
425547 TGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAGACC-CATCGAGGGTTGCGGCAGCAG
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAG
* * * * *
425611 GATCGGTAGCACGCAGTTGGGGAGCC-AGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCG
770 GATCGGCAGCACGCAG--GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * *
425675 GCTGAACGCACGCACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAA
832 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
425739 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
425804 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGACACCATCGCCAAAGCATCGCCCGAG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
425868 A--T------C--C--T--GG--CC-A--A-----------GGGGGTGTACGTACATGATGTACG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
425903 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAAAACTCACAA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
425968 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
426033 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
426098 CATGCCAAAAAAAAATACAAGGATGACGTGTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAA
391 CATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC-AAAAA
* * * * ** * *
426162 ATTTTAAAAAATCTCAAACCGTAAAAATTTTTTAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
426227 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
426292 TTGGCATTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
426357 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGTCCGGCCGCTCGTTTCGTCGGTTGGA
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGC
* ** * *
426422 TTAGGCATACGGAGTTCATT-CCACTCTAAGATCAGACCGGACCGAAGGTTGAGGCAGCAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
426486 GACAGCTCGTAGAAGGGTACCCGATCGATCCCCGACTTGTGCATCCTGCCCTTCTGGCCGGCTGA
774 GGCAGCACGCAG--GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
*
426551 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * *
426610 GCATACGGAGTTCATTACCAGTTTAAGATCGGACCGCACCAAGGGTTACGATAGCAAATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
426675 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
426729 ACCTGATCGGCGGCATTGGGGTTGCGGCGATCGGGGGGGTCGGGGGGTGT-TGCATATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
426793 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
426858 CCCCCATAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
260 CCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
426923 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
426988 TGCTTGCCTACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC-AAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * ** * *
427052 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTTGAAAATCTTAAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
427117 GCCATGGAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
427182 TTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACACTATCGATCCAAGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
427247 CATCCCGTCTCTCTGGCCGACGCAGTGCCCACCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** ** * ** ** *
427312 GCATACGGAGCACATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTGCCACAGCAGGATCAGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * * *
427377 GCATGCAGAGGG----G---GA--CCCGACCTGCACATCCCGACCCTCTGGCTGGCTGAGCGACC
778 GCACGCAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
427433 GCACGCTCATTTTGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
427486 GCATACGAAGTTCATTCCCAGCCTAAAATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
427551 CTTGGGCATGTGCTGGTGCCGCATTTTTTTTCACCGGGGCACCATCACCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
427616 ACTTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGTCAAGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-C-CGGGG-GGTGTGCGCACATGATGT
* * *
427681 ACGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
427746 CTCCCCCTTAAAGAGCATTTCAGA-TTTACAGGTTTG-TCGCCAGTAGCCATTAAAGTGTCTGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAA
* *
427809 ATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
427874 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAG-AAAAACTCCTTACGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAA
* * * * *
427938 AAATTTCAAAAAATCCTGAACCGCAAAATGTTTCGAAAGTCATGAAAAATAGAAAACG-GTCG
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
428000 ATCCCCGGCT
Statistics
Matches: 14578, Mismatches: 2366, Indels: 1509
0.79 0.13 0.08
Matches are distributed among these distances:
860 4 0.00
861 1 0.00
863 3 0.00
867 6 0.00
869 4 0.00
870 178 0.01
871 632 0.04
872 348 0.02
873 214 0.01
874 162 0.01
875 275 0.02
876 179 0.01
877 3 0.00
878 4 0.00
880 4 0.00
881 53 0.00
883 3 0.00
884 5 0.00
885 256 0.02
886 70 0.00
887 171 0.01
888 301 0.02
889 344 0.02
890 918 0.06
891 183 0.01
892 237 0.02
893 458 0.03
894 1126 0.08
895 363 0.02
896 262 0.02
897 384 0.03
898 1605 0.11
899 992 0.07
900 861 0.06
901 794 0.05
902 492 0.03
903 617 0.04
904 430 0.03
905 44 0.00
906 432 0.03
907 15 0.00
908 7 0.00
910 6 0.00
912 9 0.00
916 2 0.00
917 2 0.00
918 2 0.00
919 1 0.00
920 3 0.00
921 2 0.00
922 9 0.00
923 19 0.00
924 8 0.00
925 7 0.00
926 6 0.00
927 2 0.00
928 1 0.00
929 1 0.00
930 12 0.00
933 3 0.00
934 4 0.00
935 8 0.00
937 2 0.00
938 2 0.00
939 7 0.00
940 12 0.00
941 10 0.00
942 16 0.00
943 19 0.00
944 13 0.00
945 16 0.00
946 24 0.00
947 11 0.00
948 10 0.00
949 22 0.00
950 8 0.00
951 16 0.00
952 8 0.00
953 27 0.00
954 14 0.00
955 12 0.00
956 22 0.00
957 15 0.00
958 5 0.00
959 16 0.00
960 8 0.00
961 5 0.00
962 8 0.00
963 8 0.00
964 5 0.00
965 4 0.00
966 9 0.00
967 7 0.00
968 20 0.00
969 5 0.00
970 14 0.00
971 15 0.00
972 11 0.00
973 10 0.00
974 5 0.00
975 3 0.00
976 14 0.00
977 8 0.00
978 9 0.00
979 22 0.00
980 19 0.00
981 18 0.00
982 10 0.00
983 10 0.00
984 9 0.00
985 9 0.00
986 6 0.00
988 1 0.00
989 3 0.00
990 2 0.00
991 1 0.00
993 4 0.00
994 17 0.00
995 9 0.00
996 5 0.00
997 4 0.00
998 5 0.00
999 8 0.00
1000 11 0.00
1001 14 0.00
1002 25 0.00
1003 17 0.00
1004 2 0.00
1005 6 0.00
1008 7 0.00
1009 18 0.00
1010 5 0.00
1011 10 0.00
1014 1 0.00
1015 8 0.00
1017 4 0.00
1018 5 0.00
1019 4 0.00
1020 5 0.00
1021 3 0.00
1022 1 0.00
1024 42 0.00
1025 57 0.00
1026 45 0.00
1027 40 0.00
1028 43 0.00
1029 26 0.00
1030 66 0.00
1031 129 0.01
1032 55 0.00
1033 38 0.00
1034 51 0.00
1035 28 0.00
1036 61 0.00
1037 59 0.00
1038 41 0.00
1039 57 0.00
1040 55 0.00
1041 53 0.00
1042 24 0.00
1043 27 0.00
1044 19 0.00
1045 22 0.00
1046 20 0.00
1047 30 0.00
1048 20 0.00
1049 21 0.00
1050 14 0.00
1051 6 0.00
1052 19 0.00
1053 15 0.00
1054 30 0.00
1055 22 0.00
1056 21 0.00
1057 17 0.00
1058 81 0.01
1059 84 0.01
1060 21 0.00
1061 23 0.00
1062 24 0.00
1063 47 0.00
1064 33 0.00
1065 41 0.00
1066 78 0.01
1067 92 0.01
1068 85 0.01
1069 29 0.00
1070 21 0.00
1071 29 0.00
1072 8 0.00
1073 38 0.00
1074 30 0.00
1075 16 0.00
1076 8 0.00
1077 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
CGCAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:413915 original size:26 final size:26
Alignment explanation
Indices: 413879--413929 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
413869 TAACTTAGGC
*
413879 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCAAGTCTAAGG
413905 ATACGGAGTTCATTCCAAGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
413930 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGG
Found at i:414805 original size:26 final size:26
Alignment explanation
Indices: 414776--414828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
414766 GTTGACTTAG
414776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
414802 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
414828 G
1 G
414829 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:415699 original size:26 final size:26
Alignment explanation
Indices: 415663--415713 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
415653 TGACATAGGC
*
415663 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCACAGTCTAAGT
415689 ATACGGAGTTCATTCACAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
415714 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGT
Found at i:418388 original size:26 final size:26
Alignment explanation
Indices: 418338--418388 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
418328 TGACTTAGGG
* *
418338 ATACGGAGTTCATTCCCAGTGTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
418364 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
418389 ATTGGATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:419101 original size:26 final size:26
Alignment explanation
Indices: 419071--419123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
419061 GTTGGCTTAG
*
419071 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCATTCCCGA-TCTAA
419097 GCATACGAAGTTCATTCCCGATCTAA
1 GCATACGAAGTTCATTCCCGATCTAA
419123 G
1 G
419124 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCGATCTAA
Found at i:420388 original size:26 final size:26
Alignment explanation
Indices: 420352--420402 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
420342 TTAACTTAGG
420352 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
*
420378 CATACGGAGTTCATTTCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
420403 GATTGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:422161 original size:26 final size:26
Alignment explanation
Indices: 422122--422174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
422112 GTTGACTTAG
422122 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
422148 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
422174 G
1 G
422175 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:423050 original size:26 final size:26
Alignment explanation
Indices: 423021--423072 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
423011 TTAACTTAGA
*
423021 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
423047 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
423073 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:423953 original size:26 final size:26
Alignment explanation
Indices: 423924--423976 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
423914 TTTGACTTAG
*
423924 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
423950 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
423976 G
1 G
423977 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:424641 original size:894 final size:892
Alignment explanation
Indices: 421250--427999 Score: 8697
Period size: 894 Copynumber: 7.6 Consensus size: 892
421240 GTTGACTTAG
* * * * * ** *
421250 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGG-TGTGATAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
* * *
421313 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---T--CAGAGA
* * * *
421378 ACCTGACCGACGGTATTGGAGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGGACATGATGTG
120 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTG
*
421442 CGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
421507 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
421572 GGGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
421637 TGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAA
379 TGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
421701 AATTTAAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCC-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
421766 TGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
421831 CTTGGCATGCAGAATATATGAAGATGTGCCTAAACCTACCTACCACCCGATCGATCCACGGCTTG
572 ATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
421896 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCG--T--CCGCCCGCTCGTTTCGTCGGTTG
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * ***
421957 GTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACGGAGGGTAATGGCAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGA
* * * * * **
422022 TCGGCAG--CGTACAGCGGGGGACCGGATCGATCCCCGGCTTGCGTATTTCGCCCCTCTGG-TCG
766 TCAGCAGCACGT--AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCG
* * *
422084 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
829 GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
422148 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
* * *
422213 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTG-CTGGGGCACCATCGTCGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG---CA----C----CATCGTCAGAG
* * * *
422277 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGTCG-GGGGGTTGTGCACACATGATGT
119 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGG-TGTGCGCACATGATGT
* * * *
422341 GCAATGGGAGCTGGTACTTGGCCCTTATACTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
422405 CACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCAATAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
422470 TGGGGGCACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
422535 GTGC-TCGCCAACAAAAATACAGGGATC-TCATCTACCAGGTTTGGGACCAAAACTCCTTCCGAA
378 GTGCAT-GCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
422598 AAAATTTTAACAAATCGCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTTGT
441 AAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* **
422663 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAACATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
422728 GCATTGCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTT
570 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
422793 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCG--C-CC-GCCAGCCCGCTCGTTTCGTC-GAT
635 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAG-T
* * * *
422853 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAAATGAGGGTTGCAGCAGTA
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGCGGCAGCA
** * * * *
422917 GGATTGGCAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGC-C
763 GGATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTC
* * * * * * *
422981 GGCGGAGCACCTGTACGCTCGTTTCGTGGGTTAACTTAGACATACGGAGTTCATTCCCAGTCTAA
828 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
423046 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCA-AGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCTAG
* *
423110 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-----CA-----G-AG
* ** * * * *
423175 AACCTGATCGGTGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAGGGGGTGTGTGCACATGATGT
119 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGT
* *
423240 GTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * ** * * ** *
423305 CACACCCTCAAAGAGCATTTGATTTTTTACAGGTTTGCTACCAATAGCCAGGAAAGTGTCTAAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
423370 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
423435 GTGCACGCCAACAAAAATACAAGGATC-TCATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
378 GTGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
423499 AAATTTTAACAAATCCCGAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTC
442 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
423564 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
423629 CATTGACACGCAGAAATATGAAGGTGTTCGTAAACCCACCTACCACCCTATCGATCCACGGCTTG
571 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* **
423694 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGATCGCTCGTTTCGTCAGTTG
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTG
** *
423759 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGA
**
423824 TCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT-GCTCGTT
766 TCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGC
* * * * *
423888 TGAGCGCCCGTATGCTCGTTTTGTGGTTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
831 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
423950 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
* * *
424015 CTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCAGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGAC
* * * * *
424080 GGCATTGGGGTTCCGATGATCGGGGGGCCCGAAAGGGTGTGCGCACATGATGTGTGATGCGTGAT
131 GGCATTGGGGTTCCGACGATCGGGGGG-CCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
424145 GGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
424210 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
424275 ATTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * * * *
424340 CAAAAATACAACGATCATGTCTGCCAAGTTTGGGGCCAAAACACCTCCCGAAAAAAGTTTAAAAA
389 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
424405 ATCTCGAATCGAAAAAAGTCTT-GAAAATCATGAAAAACAGAAAATGAGTCGTCTTGCCATGAAA
454 ATC-CGAACCGCAAAAAGT-TTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
424469 CATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATGGGCATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
424534 AGAAATATGGAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
424599 TCTTTGGCCGGCATAGTGCCCGCCCGCCTGCCCGACCGCTCGTTTCGTCAGTTGGCTTAGGCATA
647 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
** *
424664 CGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCAGGATCAGCAGCACG
712 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACG
** *
424729 TAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT-GCTCGTTTGAGCGCCCGT
777 TAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGCTGAGCGCCCGC
* * * *
424793 ATGCTCGTTTTGTGGTTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
842 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
424844 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
* *
424909 CTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGAC
* * * * *
424974 GGCATTGGGGTTCCGATGATCGGGGGGCCCGAAAGGGTGTGCGCACATGATGTGTGATGCGTGAT
131 GGCATTGGGGTTCCGACGATCGGGGGG-CCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
425039 GGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
425104 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
425169 TTCCAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAG
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
425234 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAGTTTTAAAAAA
390 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAA
*
425298 ATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 ATCC-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
425363 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG-ATTGGCATGCA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
425427 GAAATATGAAGATGTGCCTAAATCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
425492 CTCTGGCCGACATAATGCCCGCCCGCCTGTTCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
648 CTCTGGCCGGCGTAGTGCCCGCCCGCC---T-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
* * ** * *
425557 ATACGGAGTTCATTCCTAGTATAAGATCAGA-CCCA-TCGAGGGTTGCGGCAGCAGGATCGGTAG
709 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCAGCAG
* ** * * * * * *
425620 CACGCAGTTGGGGAGCC-AGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGC-CGGCTGAACG
773 CACGTAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGCTGAGCG
* ** * *
425683 CACGCACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAA
837 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
425739 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATC-GAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCTAG
* * * *
425803 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGACACCATCG-C-CA-AA---G--C-A
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGA
** * * *
425859 TC-GC---------CCGA-GATC--CTGGCC-AAGGGGGTGTACGTACATGATGTACGATGGGTG
130 -CGGCATTGGGGTTCCGACGATCGGGGGGCCGAA-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
425910 CTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAAAACTCACAACCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
425975 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
426040 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * * *
426105 AAAAAAAATACAAGGATGACGTGTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTTAA
387 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAA
* * * ** *
426169 AAAATCTCAAACCGTAAAAATTTTTTAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGA
451 AAAATC-CGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
426234 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
515 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
426299 TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
580 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
426364 TCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGTCCGGCCGCTCGTTTCGTCGGTTGGATTAGGCA
645 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * * * *
426429 TACGGAGTTCATT-CCACTCTAAGATCAGACCGGACCGAAGGTTGAGGCAGCAGGATC-GACAGC
710 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAG-CAGC
* * * * * *
426492 TCGTAGAAGGGTACCCGATCGATCCCCGACTTGTGCATCCTGCCCTTCTGGC-CGGCTGAGCGCC
774 ACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGCTGAGCGCC
426556 CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * *
426610 GCATACGGAGTTCATTACCAGTTTAAGATCGGACCGCACCA-AGGGTTACGATAGCAAATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCTAG
* * * * * *
426674 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGATCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGA
* * * * * * *
426739 CGGCATTGGGGTTGCGGCGATCGGGGGGGTCG-GGGGGTGT-TGCATATGATGTGCAATGGGTGC
130 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
426802 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTA
*
426867 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
426932 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCTTGCCT
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
426997 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC-AAACTCCTTCCAAAAAAATTTTAAAA
388 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
427061 AATCTCGAACCGAAAAAAGTTTTGAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGGAA
453 AATC-CGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
427126 CTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
427191 AGAAATATGAAGATGTGCCAAAACCCACCTACCACACTATCGATCCAAGGCTTGCGCATCCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
427256 TCTCTGGCCGACGCAGT----GCCCACCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
647 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
** * ** *
427317 CGGAGCACATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTGCCACAGCAGGATCAGCAGCATG
712 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACG
* * * *
427382 CAGAGGGGGA-CC---CGA----C--C-TGCACATCCCGACCCTCTGGCT-GGCTGAGCGACCGC
777 TAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGCTGAGCGCCCGC
* *
427435 ACGCTCATTTTGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAA
842 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
427486 GCATACGAAGTTCATTCCCAGCCTAAAATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
* * **
427551 CTTGGGCATGTGCTGGTGCCGCATTTTTTTTCACCGGGGCACCATCACCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CAGAGA
* * * *
427616 ACTTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGTC-AAGGGGAGGTGTGCGCACATGATG
120 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAA--GG-GGTGTGCGCACATGATG
* * *
427680 TACGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
427745 ACTCCCCCTTAAAGAGCATTTCAGA-TTTACAGGTTTG-TCGCCAGTAGCCATTAAAGTGTCTGA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA
* *
427808 AATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTATT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
427873 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAG-AAAAACTCCTTACGAA
376 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
427937 AAAATTTCAAAAAATCCTGAACCGCAAAATGTTTCGAAAGTCATGAAAAATAGAAAACG-GTCG
441 AAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
428000 ATCCCCGGCT
Statistics
Matches: 5190, Mismatches: 532, Indels: 271
0.87 0.09 0.05
Matches are distributed among these distances:
870 14 0.00
871 260 0.05
872 4 0.00
873 211 0.04
874 164 0.03
875 104 0.02
876 171 0.03
877 6 0.00
879 4 0.00
880 2 0.00
883 3 0.00
884 1 0.00
886 60 0.01
887 95 0.02
888 207 0.04
889 23 0.00
890 301 0.06
891 111 0.02
892 249 0.05
893 396 0.08
894 857 0.17
895 223 0.04
896 63 0.01
897 3 0.00
898 412 0.08
899 411 0.08
900 535 0.10
901 1 0.00
902 2 0.00
903 8 0.00
904 281 0.05
905 3 0.00
907 1 0.00
908 1 0.00
911 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGTAGA
GGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTCGGCTGAGCGCCCGCACGC
TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:424847 original size:26 final size:26
Alignment explanation
Indices: 424818--424870 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
424808 TTTGACTTAG
*
424818 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
424844 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
424870 G
1 G
424871 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:425743 original size:26 final size:26
Alignment explanation
Indices: 425713--425765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
425703 GTTGACTTAC
425713 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
425739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
425765 G
1 G
425766 ATAGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:426620 original size:26 final size:26
Alignment explanation
Indices: 426584--426636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
426574 GTTGACTTAG
*
426584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
426610 GCATACGGAGTTCATTACCAGTTTAA
1 GCATACGGAGTTCATTACCAGTCTAA
426636 G
1 G
426637 ATCGGACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:427497 original size:26 final size:26
Alignment explanation
Indices: 427460--427511 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
427450 GTTGACTCAG
* *
427460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
427486 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
427512 AATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:428351 original size:610 final size:612
Alignment explanation
Indices: 427404--428605 Score: 1842
Period size: 610 Copynumber: 2.0 Consensus size: 612
427394 CGACCTGCAC
* * * *
427404 ATCCCGACCCTCTGGCTGGCTGAGCGACCGCACGCTCATTTTGTGGGTTGACTCAGGCATACGGA
1 ATCCCGACCCTCTGGCTGACTGAGCGACCGCACGCTCATTTCGTGGGTTGACTCAGACATACAGA
* * * *
427469 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGCCTAAAATCGGACCGGACCGAGGGTTG
66 GTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGCCTAAAATCAGACCAGACCGAGGGTTA
* * *
427534 CGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCACCGGGGCACCATCAC
131 CGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCAC
* * *
427599 CAGAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGTCAAGGGGAG
196 CAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCAAGGGGAG
* *
427664 GTGTGCGCACATGATGTACGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCAT
261 GTGTGCGCACATGATGTACGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
427729 CAAACATCGAGAACTCACTCCCCCTTAAAGAGCATTT-CAGA-TTTACAGGTTTG-TCGCCAGTA
326 CAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGC-GATTTTACAGGTTTGCT-GCCAGTA
427791 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAG
*
427856 TTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAG
454 TTTTTAGCTGAATTATTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG-G
* * * *
427921 A-AAAACTCCTTACGAAAAAATTTCAAAAAATCCTGAACCGCAAAATGTTTCGAAAGTCATGAAA
518 ACAAAACTCCTTACGAAAAAATTTCAAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAA
427985 AATAGAAAACGGTCGATCCCCGGCTTGCGT
583 AATAGAAAACGGTCGATCCCCGGCTTGCGT
* * * *
428015 ATCCCGCCCCTCTGG-TCGACTGAGC-ACCGTACGCTCGTTTCGTGGGTTGACTTAGACATACAG
1 ATCCCGACCCTCTGGCT-GACTGAGCGACCGCACGCTCATTTCGTGGGTTGACTCAGACATACAG
* * * *
428078 AGTTCATTCCCATTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
65 AGTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGCCTAAAATCAGACCAGACCGAGGGTT
* * * *
428143 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTCTCTTCATCGGGGCACCATCG
130 ACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCA
* * * * * **
428208 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGCGGG-CCGGGGG
195 CCAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGTCAAGGGG
*
428272 AGGTGTGCGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 AGGTGTGCGCACATGATGTACGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
428337 ATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTA
324 ATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTA
* *
428402 GCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAG
* *
428467 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGA
454 TTTTTAGCTGAATTATTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGA
* * *
428532 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACAGCAAAAAGTTTCAAAAATCATGAAA
519 -CAAAACTCCTTACGAAAAAATTTCAAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAA
428597 AATAGAAAA
583 AATAGAAAA
428606 TGAGTCATCT
Statistics
Matches: 533, Mismatches: 51, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
610 300 0.56
611 167 0.31
612 66 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (612 bp):
ATCCCGACCCTCTGGCTGACTGAGCGACCGCACGCTCATTTCGTGGGTTGACTCAGACATACAGA
GTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGCCTAAAATCAGACCAGACCGAGGGTTA
CGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCAC
CAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCAAGGGGAG
GTGTGCGCACATGATGTACGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTT
TTTAGCTGAATTATTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACA
AAACTCCTTACGAAAAAATTTCAAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGGTCGATCCCCGGCTTGCGT
Found at i:429911 original size:26 final size:26
Alignment explanation
Indices: 429882--429934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
429872 GTTGAATTAG
*
429882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
429908 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
429934 G
1 G
429935 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:431522 original size:907 final size:900
Alignment explanation
Indices: 427998--441537 Score: 16977
Period size: 902 Copynumber: 15.1 Consensus size: 900
427988 AGAAAACGGT
* * * *
427998 CGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGACTGAGC-ACCGTACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
428062 TGACTTAGACATACAGAGTTCATTCCCATTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
428127 GACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTCTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
428192 CATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GAGAT
*
428257 CGGGCGGGCCGGGGGAGGTGTGCGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATT
259 CGGG-GGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
428322 GGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACA
321 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
428387 GGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
386 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
428452 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATTACAAGGATCATGT
451 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * *
428517 CTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACAGCAAAAAGTT
516 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * * *
428582 TCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGCAACTTCACGTGAATGCTTAAGGG
581 TCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * * *
428647 ACCATTGTATGAATTTAGAAGCCATAAAAAAGGCATTGGCATGCAGAAATGTGAAGATGTGTCTA
646 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * *
428712 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCG
711 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * *
428777 GCCCGCCCACCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
776 GCCCGCCCGCCC-GCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
428842 GATCAGA-CTGGACC-GAGGGTTGTGGCAGCAAGATTGGCAGCACGTAGAGGGGGACCCGGT
840 GATCAGATC-AGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * *
428902 CGATCGCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTAGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *** * *
428967 TGACTTAGGCATACGGAGTTCAAATATTAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATG
65 TGACTTAGGCATACAGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * **
429032 GGATC-GAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTC
129 GGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * ** *
429096 TTCGTCAGTGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGTGGCACTGGGGTTCCGACG
193 TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-G
* * *
429161 ATCGGGGGGGGTCAAGGGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTT
257 ATC--GGGGGG-C--CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
429226 ATATTGGCCCCCCATCCCTCATCAAACGTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATT
316 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
429291 TTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGAC
381 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
429356 AAAATCTTGTACACTCCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGAT
446 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * *
429421 CACGTCTACCAAGTTTTGGG-CAAAACTTCTTACGAAAAAATTTCAAAAAATCCTGAACCGCAAA
511 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * *
429485 ATGTTTTGAAAGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
576 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
429550 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAACATGT
641 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* * * * *
429615 GCCTAAACCC-CCTACCACCCTATCGATCGACAGCTTGTGCATCCCGTC-CGTCTGGCCGACGCA
706 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGGCGTA
* **
429678 TTGCCCGCCCGCCCGCCCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
770 GTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * *
429743 GTCTAAGATCAGATCGGA-TGGAGGGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCG
834 GTCTAAGATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCG
*
429807 GC
899 AC
* * * * * * *
429809 CAATCCTCAGCTTGCGTATCCCGCCCCTTTGGCCGGCTAAGCGCCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
429874 TGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
429939 GATCAGACTGAGGGTTGCAGCAGCACATGCTGGACTCGGGCATTTGCTAGTGTCGTATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * * * * * *
430004 CACCAGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-GAT
*
430069 CGGGAGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
259 CGGG-GGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
430134 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
322 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
430199 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
387 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
430264 TTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTC
452 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * * * *
430329 TACCAAGTTTGGCGCCAAAACTCCTGCCGAAAAAGTTTGAAAAAATCCCAAAGCGCAAAAGGTTT
517 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* *
430394 CGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCATAAGGGA
582 CGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
430459 CCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTACCTAA
647 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* * * * * * *
430524 ACCCACCTACCACCTTAACGATCCATGGCTTGCGCATCCCATCTCTCTGGCAGACGTAATGCCCG
712 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
430589 CCCACCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAATCTAAG
777 CCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
430654 ATCGGATCAGACCAGATTGAAGGTTGCGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGC
841 ATCAGATCAGACCAGA--G--GGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * * * *
430718 CGATCCCCGGCTTGCGTATCCTGCCCTTCTGGTCGGTGGAGCACCCGTACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCT-GAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
430783 TGACTTAGGCATACAGAGTTCATTCCCATTCCAAGCATACGGAGTTCATTCCTAATCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
*
430848 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
430913 CGTCGGGGCACCATCGCCGGAGCATTGTCGGAGAACCTGACCGGCGGTATTGGGGTTCCGGAGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GAGAT
*
430978 TGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
259 CGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
431043 CCCCCTATCCCTTATCAAACCTGGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
431108 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
388 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
431173 TGTACACTTTGAGTTTTTAGCTG-ATTTTTTTATGCAAGCCAACAAAAATACGAGGATCACGTCT
453 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
431237 GCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTC
518 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
*
431302 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
583 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
431367 CAATGTTTGAACTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
648 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * *
431432 CCCACCTACCACCCTATCGTTCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGC
713 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
431497 CCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGA
778 CCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * * *
431562 TCAGACCAGACC-GAGGGCTATGATAGTAGGATCGACAGCATGCAGAGGGGGACCCGGC
842 TCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * ** **
431620 CGATCCCCGACTTGCGCA-CCTGCCCCTCCGGTCGGCTGAGCGCCCGCACGCTATTTTTATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* ** * *
431684 TGACTTAGGCATAC-GAAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCTGTTTAAGATC
65 TGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * *
431748 GGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTTCTGCATTTTTCT
129 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
431813 TCATCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
194 TCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-GA
* * * *
431878 T--AGGGGCCAGGGGGTGGGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
258 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
431941 ACCCCTATCCCTCATCAAACCTCGAGAACTGACACCTCCTTAAAGAGCATTTGAGATTTTACAGG
323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
432006 TTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
388 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
432071 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCT
453 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * *
432136 ACCAAGTTTGGGGGCAAAAATCCTTCCAAAAAAATTTCAAAAAATCCCAAACCGCAAAAACTTTC
518 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * * * *
432201 AAAAATCATGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGAC
583 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** *
432266 CATTGTATGAATTTACAAGCCGA-AAAAATTTCATTGGCAC-TCAAAAATATGAAGATGTGCCTA
648 CATTGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTA
* * * * * * *
432329 AACCCTCCTACCACCCTATCCATCCACGGCTTGCGCATCCCATCTCTCTAGCCGACCT-G-G--T
711 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * ** *
432390 GCCCGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTGAGGCATACGAAGTTCATTCTGAGTATAAG
776 GCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * * *
432452 ATTAGATCAGA-TTGAGGGTTACGGTAGCAGGATTGGCAGCACACAGAGGGGGACCCGAT
841 ATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * *
432511 CGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGATTGAGTGCCCGCACGTTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
** *
432576 TGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATC
65 TGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
432640 GGACCGGATCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
129 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
432705 TCGTCGGGGCACAATC-CACGGAGCATCACCGGAGAACTTGACCGACGGCATTGGGGTTCCAGCG
194 TCGTCGGGGCACCATCGC-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GAG
* * *
432769 ATTGGGGGGTCGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
257 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * *
432834 GCCCCCTATCCCTCATCAAACCTCAAGAACTTACAACCCCTCAAAGAGCATTTGAGATTTTATAG
322 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
432899 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACATTTTTCAAATGGTCACAAAAT
387 GTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
432964 CTTGTACCCTTCGAGTTTTTAGCTGAATGTTTTTGTGGAAGCCAACAAAAATACAAGGATCACGT
451 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * * * * * *
433029 CTAAGAAGTTTGGGACCAAAACCCCTTCCGAAAAAATTTCAAAAAATCTCGAACTGCAAAAAGTT
516 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
433094 T-GAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
581 TCG-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
433158 GACCAATGTTTGAACTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
645 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
* *
433223 AAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCTTCTCTCTGGCCGGCGT-G-G--
710 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
433284 TGCCCGCCCG--C-CCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
775 CGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
433346 GATCAGACCAGACCA-AGGGTTGCAGCAGTAAGATCGGCAGCACGCAGAGGGTGACCCAAT
840 GATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * *
433406 CGATGCCCGGCTTGCGCATCCGGCACCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
433471 TGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCAGTCTAAGATTG
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
433536 GATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGCATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
433601 CGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGTTTCCGACGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-GAT
* * * *
433666 CGGGGAAGCCAGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
259 CGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
433731 CCCCCTATCCCCCATCACACCTCCAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGG
323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
433796 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCT
388 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
433861 TGTAGACTTCGAGTTTTCAGCTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATAACGTCT
453 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
433926 ACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGCTTT
518 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTT
* * * * *
433991 -GAAAATTGCGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
582 CGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
434055 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
647 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* * * *
434120 ACCCACCTACCACCC-ATCAATCCACGACTTGCGCATCCCGTTTCTCTGGCCGGCATAGTGCCCG
712 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * ** * *
434184 ACCACCCGTCCGCCTGCTTATTTCATCGGTTGGCTTAGGCATACGGGGTTCATTTCCAGTCTAAG
777 CCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
434249 ATCAGACCAGA-CTGAAGGTTGCCGCAGTAAGATCGACAGCATGC-GAACGGGGACCCGAC
841 ATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-AGGGGGACCCGAC
* * * * * *
434308 AGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * ** * *
434373 AGACTTAGGCATACGGAGTTCATTCCTAGTCTCAGCATATAGAGTGCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * * * *
434438 AACTTGACGGAGGGTTCCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * ** *
434503 CACCGGGGCACCATCGGCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCTGCGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GAGAT
*
434568 CGGGGGGGCCGGGGAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
259 C-GGGGGGCC-----GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
434633 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTT
318 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
434698 ACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
383 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
434762 AATCTCGTACACTTCGAGTTTTTAGCT-TATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCA
448 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
434826 TGTCTACCAAGTTTGGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAA
513 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
434891 GTTTTGAAAACCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
578 GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
434956 GGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
643 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
435021 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--TG
708 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * ** *
435084 --TGCCCACCCG--C-CCGCTC-TTTCATTAGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCT
773 CCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
435143 AAGATCAGA-CTGGACCA-AGGGTTACAGCT-GCAGGATTGGCAACACGCGGAGGGGGACCCGAT
838 AAGATCAGATC-AGACCAGAGGGTTGC-GGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * ** *
435205 CGATCCCCGACTTGCGCATCCTGCCCCTCTAGCCGGTTGAGCGCTCATACGTTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
435270 TGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T-C--AG---------A-TC----A---
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
435309 GACCAGGCCGAGGGTTACGACAG-ATCATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
130 GACCAGACCGAGGGTTGCGGCAGCA-CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
435373 TCATCGGGGCACCATCACCGTAGCATCGCCGAAGAACCTGA-CTAGCGGCATTGGGGTTCCGATG
194 TCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA-G
* * *
435437 ATCAGGGGGGCCGGGGGGGTGTGCACACATGATGTACGGTGGGTGCTGGTACTTGGCCCTTATAT
257 ATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
435502 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
320 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
435567 AGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
385 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * * *
435632 TCATGTACACTTCGACTTTTTAGCTAAATGTTTTTGTGCAAGGCAACAAAAATTCAAGGATCACG
450 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
435697 TCTACCAAGGTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
515 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *
435762 TTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGG
580 TTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
435827 GAGCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGTCT
645 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
** * * *
435892 AAACCCACCTACCACCCTATCGATCCGTGGCTTGCGCATCCCGTCTCTCTAGCCGACTTAGTGCC
710 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
435957 CGCCCGCCCGCCCTTCCGCTCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTA
775 CGCCCGCCCGCCC-GCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * **
436022 AGATCCA-ACCAGATCA-AGGGTTGCGGTAGTAGGATCGACAACATGCAGAGGGGGA-CCGGT
839 AGAT-CAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * * *
436082 CGATCCCCGACTTGCTCATGCCACCCCTCTGGCCGACTGAGCACCTGCAAGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
436147 TGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTG
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
436212 GAACAGATCGAGGGTTGTGGCAGCACGTGCTAGGCTCGAGCATGTGCTGCTGCCGTATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
436277 CGTCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGATCGACGGCATTGGGGTTCTGACGAT
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-GAT
* * * *
436342 CGGGGGGACCAGGGGGTGTGCGTACATGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG
259 CGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
436407 CCCCCTATCACTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGG
323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
436472 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCT
388 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
436537 TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCT
453 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
436602 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT
518 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
436667 GAAAATCGTGAAAAAT-GCAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
583 GAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
436731 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
647 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* * * *
436796 ACCC-CCTACCACCCTATCGATCCACGGCTT-CCCATCCCGTCTCTATGGGCGGCGTATTGCCCG
712 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
436859 CCTGCCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAG
777 CCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
436924 ATC-GAACCAGATCAG-GGGTTGCGGCAGCAGGATCG-CAACACATAGAGGGGGACCCGAC
841 ATCAG-ATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * *
436982 CAATCCCCGACTTGCTCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCAC-CTTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGCTGAGCGCCCGCACGC-TCGTTTCGTGGG
* * *
437046 TTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
64 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
437111 GAACCAGACCGAGGGTTGTGGCAGCACAT-CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCT
129 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
437175 TCGTCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGACGACATTGGGGTTCCGGCGA
194 TCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GAGA
* *
437240 TCGGGGGGGCCAGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATT
258 TC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
437305 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATCTTATA
321 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
437370 GGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
386 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
437435 CGTGTACACTTCGAGTTTTTAGCT-ACA-TTTTTTGTGCATGCCAAAAAAAATATAAGGATCACG
451 CTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * *
437498 TCTACCAAGTTTGGGGACAAAAATCTTTCCGAAAAAATTTTAAAAAAATCTCGAATCG--CAAAG
515 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAG
* *
437561 TTTCAAAAATCATGAAAAATAGAAAACGAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
579 TTTCGAAAATCGTGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
437626 GGGAGCATTGTATAAATTTAC-AGCCATAAAAA-GGCATTGGCAAGTAGAAATATGAAGATGTGC
643 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
* * *
437689 CTTAACCCACTTACGCACCCTATCGATCCACGGCTTGCGCCATCCCGTCTCT-TGGCCGGGCATA
708 CTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCG-CATCCCGTCTCTCTGGCC-GGCGTA
*
437753 GTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
770 GTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
437818 GTCTAAGATCAGATCGGA-C-GAGGGTTACCGGGAGGCAAGGATCGACAAGCACGTAGAGGGGGA
834 GTCTAAGATCAGATCAGACCAGAGGGTT-GCGGTA-GC-AGGATCGAC-AGCACGCAGAGGGGGA
*
437881 CCCAAC
895 CCCGAC
* * * * * * *
437887 CGATCCCCCAGC-TGTGCATTCCCGCCCCCCTCTGGCTGGCTGAGCGCCCGTACGTTCATTTCCA
1 CGAT-CCCCGGCTTGCGCA-TCCCG--CCCCTCTGGC-CGCTGAGCGCCCGCACGCTCGTTT-CG
*
437951 TGGGGTGACTTA-GCATACAGAGTTCATT-CCAGTCCTAAGCATACGGAGTTCATTCCCAGTCTA
60 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTA
* *
438014 AGATCAGACC-GAACCGAGGGTTTACGGACCAGCACATGCTGGGCTCGGGCCATGTGCTGGTG-C
124 AGATCGGACCAG-ACCGAGGG-TTGCGG--CAGCACATGCTGGGCTCGGG-CATGTGCTGGTGCC
* * * * * *
438077 TCATTTTTCTTCG-CGAGGCACCATCGCGGGAGCATCGTCGGAGAACTTGACCGGCGACATT-GG
184 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* * *
438140 GTTCCGGAGATCGGGGGGGC-GGGGGTGTGCGCACTTGATGTG-TATGGGTGCTGGTACTTGGCC
249 GTTCC-GAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
438203 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTTGA
313 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGA
*
438268 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG-CACTTTTTTCAAATGG
377 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
438332 CCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAATAAAAATACAA
442 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
438397 GGATCACGTTTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCACAAACCG
507 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * ** * *
438462 AAAAAAGTTTCAAAAATCATGAAAAATACCAAACGAGACGTCTTGCCATGAAACTTCAGGTGAAG
572 TAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
438527 GCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
637 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
438592 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
702 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
438657 ATAGTGCCCGCCCGCCCG---TCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCC
767 GTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * *
438719 CAGTCTAAGATTAGACCACA-CTGAGGGATGTGGTAACAGGATCGACAGCATGCAGAGGGGTACC
832 CAGTCTAAGATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC
* *
438783 TGGC
897 CGAC
* * ** * * *
438787 CGATTCCCGGCTAT-CGCATTCTACCCCTCTGGCCAGCTGAGGGCCCACACGTTCGTTTCGTGGG
1 CGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
438851 TTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
64 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
438915 CGGACCGGACCGCA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTT
128 CGGACCAGACCG-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** * * *
438979 CTTCGTCGGGGTACCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTGAGGTTTCGAC
192 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-
* * * * * **
439044 GATCAGGGGG-CAGGGGGTGTACACACATGATGTGCAATGGGTGCCAGTACTTGGCCCTTATATT
256 GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
439108 GGCCCCTTATCCCTCATTCAAACCT-GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAC
321 GGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
439171 AGGTTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
385 AGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
439235 ATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCACAGCCAACAAAAATACAAGGATCA
449 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCA
* * *
439299 CGTTCTACCAAGTTTGGGGCCAAAATTCCTTCC-AAAAAATTTT-GAAAATCCCGAACCATAAAA
513 CG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
439362 AGTTTTGAAAATCGTG-AAAAT-GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
577 AGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** *
439425 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATATAGAAATAT-AAGATG-A
642 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
* * * * * *
439488 CCTAAACCCACCTCCCACCTTAGCGATCCAC-ACTTGCGCATCCCGTCTCTCTAGCCGACGTAGT
707 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
439552 GCTCGCCCGCCCGTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
772 GCCCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
439617 CTAACATCAGACCAGACC-GAGGTTTTCGGTAGCAGGATCAACAGCACGTAAAGGGGGACCCGAC
836 CTAAGATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * *
439681 CGATCCCTGGCTTGCACATCCCGTCCCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
439746 TGACTTAGGCATACAGAGCTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * **
439811 AACCAGACCAATGGTTGTGACAGCACATGCCCGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
439876 CGCCGGGG---CA----C----CA-CGTCGGAGAACCTGACCGGCGACATTAGGG-TCCG-GCAA
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAG--A
* * *
439927 TCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTG
258 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
439992 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
322 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
440057 GGTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATTGGGACATTTTTTTCAAATGGTCACAAAATC
387 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * **
440122 TTGTACGCATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCATATC
452 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * **
440187 TACCATGTTTGGGGCAAAAACTCCTTCC-AAAAAATGTTTCAAAAATCCTGAACCAAAAAAAGTT
517 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTTAAAAAATCCCGAACCGTAAAAAGTT
*
440251 TCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
581 TCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
** ** * *
440316 ACCATTGTATGAATTTACAAGAAATAAAAATGGCATTATCATGCAGAAATATGAAGATGTGCCTA
646 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* *
440381 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCATAGTGCCC
711 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* *** * * * *
440446 ACCCGTTTGCCCGCCCGCTCGTTTCATCAGTTGGCTTACGG-GTACGGAGTTCATTCCTAATCTA
776 GCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTA-GGCATACGGAGTTCATTCCCAGTCTA
** ** * * ** * ** * **
440510 AGATTGGATTGGATC-GAGGGTTGTGACAGTAGGATCGGTAGCATGCAGAGGGGGACCCGGT
839 AGATCAGATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * *
440571 CGATCCTCGGCTTACGCATCCCGCCCCTCTGGCAAGCTAAACGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
440636 TGACTTAAGCATACAAAGTTAATTCCCAGTCTAAGCATACAGAGTTCATTCCCATTCTAAGATCG
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * **
440701 GATCAGACCGAGGGTTACGGCAGGACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTT
130 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
440766 CGCCGGGGCACCATCGCTGGAGCATCATCGAAGAACCTGA---TCGG---T--GG---C---AT-
195 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGATC
* *
440816 -------TGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
260 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
440874 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
325 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
440939 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
390 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
441004 TACACATCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTAC
455 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * *
441069 CAAGTTTGTAGCCAAAACTCCTTCCGAAAAAATTTTAAACAATCCCGAACCGTAAAAAGTTTTGA
520 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGA
* * * *
441134 ATATCGTGAAAAATAGAAAACGAGTCGTATTGCCATTAAACTTCACGTGAAGGCTTAACGGACCA
585 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
441199 TTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
650 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
* * * *
441264 CACTTACCACCCTATCGATCCATGGCTTGCGCATGCCATCTCTCTGGCCGGCGTAGT--------
715 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * * * *
441321 GCCTG--C-CTGTTCGTTTCATCAGTTGGCTTAGACATACAGAGTTCATTCCTAGTCTAAGAT-T
780 GCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * *** * * * **
441382 GAACCATTCTA-AAGGTCGCAACAGCAGGATCGGCAGTACGTAGAGGGGGACCCGGT
845 G-ATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * ** * *
441438 CGATCCTCAGCTTGTGCATCTAGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
441503 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
441538 ATTGGACCGA
Statistics
Matches: 11072, Mismatches: 1324, Indels: 517
0.86 0.10 0.04
Matches are distributed among these distances:
866 2 0.00
867 303 0.03
868 61 0.01
869 270 0.02
870 4 0.00
871 119 0.01
873 8 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 89 0.01
878 79 0.01
879 460 0.04
880 7 0.00
881 6 0.00
882 39 0.00
883 118 0.01
884 129 0.01
885 44 0.00
886 7 0.00
887 91 0.01
888 10 0.00
889 28 0.00
890 337 0.03
891 141 0.01
892 215 0.02
893 108 0.01
894 478 0.04
895 1058 0.10
896 302 0.03
897 360 0.03
898 270 0.02
899 523 0.05
900 509 0.05
901 339 0.03
902 1059 0.10
903 346 0.03
904 172 0.02
905 302 0.03
906 542 0.05
907 935 0.08
908 530 0.05
909 568 0.05
910 15 0.00
911 50 0.00
912 24 0.00
913 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGATCG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ATCAGACCAGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
Found at i:432620 original size:26 final size:26
Alignment explanation
Indices: 432584--432636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
432574 GTTGACTTAG
* *
432584 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
432610 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
432636 G
1 G
432637 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:433509 original size:26 final size:26
Alignment explanation
Indices: 433479--433531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
433469 GTTGACCTAG
*
433479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
433505 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
433531 G
1 G
433532 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:434411 original size:26 final size:26
Alignment explanation
Indices: 434381--434430 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
434371 GTAGACTTAG
* * *
434381 GCATACGGAGTTCATTCCTAGTCTCA
1 GCATACAGAGTGCATTCCCAGTCTCA
*
434407 GCATATAGAGTGCATTCCCAGTCT
1 GCATACAGAGTGCATTCCCAGTCT
434431 AAGATCAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTCA
Found at i:436191 original size:26 final size:26
Alignment explanation
Indices: 436155--436207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
436145 GTTGACTTAG
436155 GCATACAGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
*
436181 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
436207 G
1 G
436208 ATTGGAACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Done.