Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 40 of 120
Found at i:4464358 original size:26 final size:26
Alignment explanation
Indices: 4464306--4464358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4464296 CTGGTCCGAT
* * *
4464306 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
4464332 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
4464358 C
1 C
4464359 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:4464867 original size:838 final size:821
Alignment explanation
Indices: 4463672--4465921 Score: 2514
Period size: 881 Copynumber: 2.6 Consensus size: 821
4463662 TATGTCGACT
* * *
4463672 AGAGAGACGGGATGTGCAAGCCTGGATCGATAGGGTGGTACGTGTGTTTAGGCACATCATCATAT
1 AGAGAGACGAGATGCGCAAGCCTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCATCATAT
** * *
4463737 TTCTGTATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
4463802 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTCAAAACGTCTTGTAGTTAAGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTCAAAACGTCTTGCAGTTAAGG
*
4463867 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGACATAATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGACACAATCCTTGTATTTT
*
4463932 TGTTGGCATGCAAAAAAACATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCAAAAAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
4463997 AAATGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-GCT
326 AAAAGTCTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
4464061 CTTTAAGGGGGTATGAGTTCTCGAAGTTTGATGAGGGATA-GAGGGCCAATATAAGGGCCAAGTA
391 CTTTAAGAGGGTATGAGTTCTCGAAGTTTGATGAGGCATACG-GGGCCAATATAAGGGCCAAGTA
* * *
4464125 CCAGCACCCATCGCACATTATGTGCTCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATA
455 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGAAACCCCAATA
4464190 CCGCCGGTCAAGTTCTCCGACGATGCTCAGACGATGGTGCCTCGGCGAAGAAAAATATGAT-ACC
519 CCGCCGGTCAAGTTCTCCGACGATGCTC---CGA-----------CGAA-AAAAA-ATGATCACC
* * *
4464254 AGCACATGCCCGAGCACAACATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAA
568 AGCACATGCCCGAGCACAACATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
*
4464319 TGAACTCTGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAA-CG
633 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAAC-AAGCG
** * *
4464383 TG-GGAGCGCTAAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCC
697 TGCGG-GCGCTAAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCC
*
4464447 GCGTGCTGCCAATCCTGCCTATGCCAACCGACGAAACGAACGGGCGGGCACTACGCCTGCC
761 ACGTGCTGCCAATCCTGCCTATGCCAACCGACGAAACGAACGGGCGGGCACTACGCCTGCC
* *
4464508 AGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGAGATGCGCAAGCC-TGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCATCATA
* *
4464573 TTTCTACGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATTGTCCCTTAAGCCTTCACG
65 TTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** * * *
4464638 TTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA-ATTTTTGAAACTTTTTGCGGTT-
130 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AGA-TTTCAAAACGTCTTGCAGTTA
* * * ** * *
4464701 CGGTATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTA
193 AGG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGACACAATCCTTGTA
** *
4464766 TTTTTGTTGGCATGCACAAAAAA-ATTCAACTAAAAAGTCGAAGTGTACAAGATTTTGTGAGCAT
257 TTTTTGTTGGCATGCA-AAAAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCAT
* *
4464830 TTGAAAAAAGTCTCCCCATTTTACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
321 TTGAAAAAAGTCTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
4464895 ATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGCATACGGGGCCAATATAAGGGCCA
386 ATGCTCTTTAAGAGGGTATGAGTTCTCGAAGTTTGATGAGGCATACGGGGCCAATATAAGGGCCA
* *
4464960 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTCGGAACCCCA
451 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGAAACCCCA
* * * * *
4465025 ATACCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGAAAAAAAATGCTGCACCAGCACATGCCCG
516 ATACCGCCGGTCAAGTTCTCCGACGATGCTCCGACGAAAAAAAATGAT-CACCAGCACATGCCCG
* * * * *
4465090 AGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTAT
580 AGCACAACATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
4465155 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACAAGCGTGCGGGCGCTTAG
645 GCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAG
* * *
4465220 CCTGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATC
710 CCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGCCAAT-
4465285 CTACTGCCGGAACCCTCAGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCA
774 C--CT----G---CCT-A--------TG------C-C--------AAC-C-G-A---C---G---
* *
4465350 ACCAATGAAACGAGTGGGCAGGCGGGCACTACG-CTGGCT
794 A--AACG-AAC--G------GGCGGGCACTACGCCT-GCC
* * * * *
4465389 AGAGAGACGAGATGCGTAAGCCGTGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGAGATGCGCAAGCC-TGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCATCATA
* * *
4465454 TTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
65 TTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * ** * * *
4465519 TGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAATTTTTTACAGTTCA
130 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGA-TTTCAAAACGTCTTGCAGTTAA
** ***
4465584 GGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
194 GGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCAACAAACTTGGTAGACACAATCCTTGTAT
* * * * *
4465648 TTTTGTTGGCGTGGAAAAAAA-ATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
258 TTTTGTTGGCATGCAAAAAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTT
* * * *
4465712 GAAAAAAGTAC-CCCCA-TTCTAGACACTTTAATTGCTACTGGCAGTAAACCTGTAGAATCTCAA
323 GAAAAAAGT-CTCCCCATTTC-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * * * *
4465775 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-A-ATAAGGCCCA
386 ATGCTCTTTAAGAGGGTATGAGTTCTCGAAGTTTGATGAGGCATACGGGGCCAATATAAGGGCCA
* * * * *
4465838 AGTACCAGCACCCATCGCACATCATGTGCAAACACCCCCACCCCCCGGCACCCCCGATTGTCGGA
451 AGTACCAGCACCCATCGCACATCATGTGC--GCA----CACCCCCCGACCCCCCCGATCGTCGAA
*
4465903 ACCCCAATACTGCCGGTCA
510 ACCCCAATACCGCCGGTCA
4465922 TGTTTTTTGG
Statistics
Matches: 1220, Mismatches: 114, Indels: 112
0.84 0.08 0.08
Matches are distributed among these distances:
822 4 0.00
823 7 0.01
824 187 0.15
825 3 0.00
827 2 0.00
831 1 0.00
834 3 0.00
835 4 0.00
836 20 0.02
837 139 0.11
838 239 0.20
839 94 0.08
840 1 0.00
843 2 0.00
849 1 0.00
850 1 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 1 0.00
864 1 0.00
867 1 0.00
870 1 0.00
872 3 0.00
873 3 0.00
875 1 0.00
878 38 0.03
879 3 0.00
880 150 0.12
881 263 0.22
882 2 0.00
884 40 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (821 bp):
AGAGAGACGAGATGCGCAAGCCTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCATCATAT
TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTCAAAACGTCTTGCAGTTAAGG
ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGACACAATCCTTGTATTTT
TGTTGGCATGCAAAAAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTCTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGAGGGTATGAGTTCTCGAAGTTTGATGAGGCATACGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGAAACCCCAATACC
GCCGGTCAAGTTCTCCGACGATGCTCCGACGAAAAAAAATGATCACCAGCACATGCCCGAGCACA
ACATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAGCCAGCC
AGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGCCAATCCTGCCT
ATGCCAACCGACGAAACGAACGGGCGGGCACTACGCCTGCC
Found at i:4465159 original size:26 final size:26
Alignment explanation
Indices: 4465130--4465182 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4465120 CCGATTCGAT
4465130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4465156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4465182 C
1 C
4465183 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4466821 original size:26 final size:26
Alignment explanation
Indices: 4466792--4466842 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4466782 CCGGTCCGAT
4466792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4466818 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4466843 ACCCAAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4467879 original size:26 final size:26
Alignment explanation
Indices: 4467850--4467902 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4467840 CCGGTCCGAT
4467850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4467876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4467902 C
1 C
4467903 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4468771 original size:26 final size:26
Alignment explanation
Indices: 4468735--4468785 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4468725 CGGTCTGATC
*
4468735 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
4468761 TTAGGCTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
4468786 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:4471306 original size:26 final size:26
Alignment explanation
Indices: 4471277--4471328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4471267 TGGTCCGATT
4471277 TTAGACTGGGAATGAAC-TCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
4471303 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
4471329 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:4472550 original size:869 final size:864
Alignment explanation
Indices: 4470763--4473016 Score: 2911
Period size: 869 Copynumber: 2.6 Consensus size: 864
4470753 TAGGCACATA
* *
4470763 CCTTCACGTGAAGTTTCATGGCAAGA-GAACTCATTTTCTATTTTTCATGATTTTCGAAACTTTT
1 CCTTCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
** * * * *
4470827 TGTGATTCAAGATTTTTTAAAATTTTTTCA-AA-AAGTTTTTTGACCCCAAACTAGGTAGACGTG
65 TACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAG-TTTTT-ACCCCAAACTTGGTAGACGTG
*
4470890 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
128 ATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
4470955 GTTACCATTTGAAAAAAGTGTCCCCATTTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTA
193 GTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
4471020 AAATCTCAAATGCTCTTTAAGGTGGTGTGAATTCTCA-AGGTTTGATGAGGGATAGGGGGCCAAT
257 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATA-GGGGCCAAT
* * * * * *
4471084 ATAAGGAG-CAAGTGCCAGCACCCAT--CACATCATGTGTGCACACCCCCTGGCCCCACCAATCG
320 ATAAGG-GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCA
* * * **
4471146 CCAAAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGGCGATGGTGCCCCGGTGAAGA
384 CCAGAACCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
** * * *
4471211 AAAATATGGCACCAGCACATGCCCGAGCTCGGCATGTGCTTCCGTAACCCTCGGTCTGGTCCGAT
449 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C--TC--G--CG--
* * *
4471276 TTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
504 -TT--ACT-GG-A-G-A-TCTGTATGCTTAGACTGGGAAGGAACTCCATATGCCTAAGTCAACCC
* * * *
4471341 ATGAAACGAGCGTGCGACGCTCAGTCGACCAGAGGGGCGGGGATCGATCGGGTCCCCTTCTGTGT
561 ATCAAACGAGCGTGCGACGCTCACTCGACCAGAGGGGCGGGGACCGATCGGGTCCCCTTCTGCGT
* * * * * *
4471406 GCTGTCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
626 GCTGTCGATCCTACTACCGCAACCCTCAGTCTAGTCTGATCCTAGACTGGGAATCAACTCCGTAT
* * **
4471471 GCCTAAGCCAATCGATGAAACGAGGAGGCAGGTGGGCGGGCACTACCCCGGTCAGAGAGACGGGA
691 GCCTAAGCCAACCGATGAAAC-AGGAGGCAGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGA
*
4471536 TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
755 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
4471601 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
820 AATGCCATTTTTATGGCCTGCAAACTCATACAATGGTCCCTTAAG
* *
4471646 CCTTCACGTGAAGTTTCATGGCCACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
1 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
4471711 ACGGTTCGAGAATTTTTAAAATTTTTCCAGAAGGAGTTTTTATCCCAAACTTGGTAGACGTGATC
66 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATC
* * * *
4471776 CTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGCG
131 CTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
4471841 ACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
4471906 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGCGATAGGTGGCCAATATAAG
261 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGG-GGCCAATATAAG
*
4471971 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCACCAGAA
325 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAGAA
* ** *
4472036 CCCCAATGCCGCTGGTCAGGTTCTCTGGCAATGCTCCGGCGATGGTGCATCGACGAACAAAAATG
390 CCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
* * *
4472101 CAGCACCAGCACATGCCCGAACCCAGTATGTGCTGCCGTAACCCTCG-G-T-CT-G-G-TCTG-A
455 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGCGTTACTGGAGATCTGTA
*
4472159 T-CTTAGACTGGGAAGGAACTCCATATGCCTAAGTCAACCCA-CAAGACGAGCGTGCGGGCGCTC
520 TGCTTAGACTGGGAAGGAACTCCATATGCCTAAGTCAACCCATCAA-ACGAGCGTGC-GACGCTC
* *
4472222 AACT-GGCCAGAGGGGCAGGATGCGCAAGCCAAGTATCAGCCGGGTCCCTTTCTGCGTGCTGTCG
583 -ACTCGACCAGAGGGGC-GG--G-G--A-CC--G-AT----CGGGTCCCCTTCTGCGTGCTGTCG
* * * *
4472286 A-CCTTACTGCCGCAAGCCTCGGT-TCAGTTTGATCCTAGACTGGGAATCAACTCCGTATGCCTA
633 ATCC-TACTACCGCAACCCTCAGTCT-AGTCTGATCCTAGACTGGGAATCAACTCCGTATGCCTA
* * **
4472349 AGCCAACCGATGAAA-A-GA-GCGGGCGGGCGGGTACTACGTCGACCAGAGAGACGGGATGCGCA
696 AGCCAACCGATGAAACAGGAGGCAGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCA
* *
4472411 AGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
761 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
4472476 ATTTTTATGGCCTGCAAACTCATACAATGGTCCCTTAAG
826 ATTTTTATGGCCTGCAAACTCATACAATGGTCCCTTAAG
*
4472515 CCTTCACGTGGAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
1 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * ** *
4472580 ACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
66 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATC
*
4472645 CTTGTATTTATGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
131 CTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * **
4472710 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA-TCGACAGCAAACCAATAAAA
196 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAA
4472774 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGAGGGCCAATATAA
260 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG-GGGCCAATATAA
* *
4472839 GGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCGATCACC-GA
324 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAG-
* * * * *
4472903 AACCCCATTGCCG-TCGGTTAGGTTCTCTGGTGATACTCCGGCGATGGTGCCCCAACGAAGAAAA
388 AACCCCAATGCCGCT-GGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * ** * *
4472967 ATGCGGCACCAACGCATGCTTGAGCCCAGCATGTGCTGTCGCAACCCTCG
452 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
4473017 ATCGATAGTG
Statistics
Matches: 1213, Mismatches: 127, Indels: 76
0.86 0.09 0.05
Matches are distributed among these distances:
857 2 0.00
858 47 0.04
859 19 0.02
860 8 0.01
862 1 0.00
863 2 0.00
865 1 0.00
866 2 0.00
868 6 0.00
869 587 0.48
870 3 0.00
871 2 0.00
872 3 0.00
873 84 0.07
875 1 0.00
878 1 0.00
880 2 0.00
881 3 0.00
882 115 0.09
883 188 0.15
884 134 0.11
885 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (864 bp):
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAGAAC
CCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGCGTTACTGGAGATCTGTAT
GCTTAGACTGGGAAGGAACTCCATATGCCTAAGTCAACCCATCAAACGAGCGTGCGACGCTCACT
CGACCAGAGGGGCGGGGACCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTACCGCAACCC
TCAGTCTAGTCTGATCCTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAACAGGA
GGCAGGCGGGCGGGCACTACCCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGCAAACT
CATACAATGGTCCCTTAAG
Found at i:4479691 original size:26 final size:26
Alignment explanation
Indices: 4479655--4479707 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4479645 CCGGTCCGAT
*
4479655 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4479681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4479707 C
1 C
4479708 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4482173 original size:26 final size:26
Alignment explanation
Indices: 4482144--4482196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4482134 CCAGTCCGAT
4482144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4482170 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4482196 C
1 C
4482197 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4483960 original size:26 final size:26
Alignment explanation
Indices: 4483910--4483961 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4483900 TCTGGTCCGA
* *
4483910 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAAATCCGTAT
4483936 TCTTAGACTGGGAATGAAATCCGTAT
1 TCTTAGACTGGGAATGAAATCCGTAT
4483962 GCCTGGGCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAAATCCGTAT
Found at i:4485398 original size:872 final size:870
Alignment explanation
Indices: 4481412--4486585 Score: 6407
Period size: 872 Copynumber: 5.9 Consensus size: 870
4481402 TACCAAAATG
* * * * *
4481412 CTCGATCTGATCCGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCAACGAAACGAG
1 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
4481477 CAGGC-GTGCGGGCGGCCAGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 C-GGCAG-GCGGGC-G---GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGA
* * *
4481541 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATA-TTCCTGCATGGCAATGCCATTTTTATGGCT
125 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCC-ACATGCCAATGCCATTTTTATGGCT
* * *
4481605 TATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTC
189 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** *
4481670 TATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGA-ATTTTTTAAAATCTTTTC-AGAAGGAG
254 TATTTTTCACGATTTTTGAAACTTTTTACGGTT-GGAGATTTTTT-AAATTTTTTCGA-AAGGAG
*
4481733 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAACATTCAGC
316 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* *
4481797 TAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
381 TAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
4481862 AATGGCTACTGGTAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTTGTGAGTTCTCTAGG
446 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGG
**
4481927 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGC
511 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
4481992 ACACCCCCCGGCCCCACGATCGCCAGAACCCAAATGCCGTCGGTCAGGTTCTCCAGCGATGATCC
576 ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGATCC
* *
4482057 AGTGATGGTGCCCC-AGCGAAGAAAAAT-GCAGCACCAACACATGCCCGAGCCCCA-CATGTGCT
641 AGCGATGGTGCCCCGA-CGAAGAAAAATCG-AGCACCAGCACATGCCCGAG-CCCAGCATGTGCT
4482119 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAAT
703 GCCGCAACCCTCGGTCC-G---G-TC-----C---G-AT---CT---TA-G---A--CTGGGAAT
* *
4482184 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCG
742 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
** * * * *
4482249 GGATGCATAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCC-ATCCTGTTGCCGTAACC
807 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACATGCTG-CCGATCCTATTGCCGCAACC
* * ** * * * *
4482313 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAAATCCATATGCCTAAGCTAACCGATGAAACGAG
1 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
4482378 CGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGG
66 CG-GCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGG
* * * *
4482443 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCAATTTTTATGGCTTGTAAA
130 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
4482508 TTTATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAAACGACTTGTTTTCTATTTT
195 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
4482573 TCAAGATTTTTAAAACTTTTTATGGTTCGG-GATTTTTTAAAATTTTTTC-AGAAGGA-TTTTGG
260 TCACGATTTTTGAAACTTTTTACGGTT-GGAGATTTTTT-AAATTTTTTCGA-AAGGAGTTTT-G
* * * *
4482635 GCCCCAAACTTGGTGGAAGTGATACTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAA
321 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
4482700 ACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGG
386 ACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
4482765 CTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTCCTCCAGGTTTGA
451 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGA
4482830 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
516 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
4482895 CCCCGGCCCCCCGATCACTGGAACCTCAATGTCGTCGGTCAAGTTCTCCGGTGATGATCCAGCGA
581 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGATCCAGCGA
*
4482960 TGGTGCCCCGACGAAGAAAAATACG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
646 TGGTGCCCCGACGAAGAAAAAT-CGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
4483024 CCATCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
710 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
* *
4483089 AGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCC
775 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCC
*
4483154 TCTACATGTTGCCGATCCTATTGCCGCAACC
840 TCTACATGCTGCCGATCCTATTGCCGCAACC
*
4483185 CTCGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
1 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * * *
4483249 CTGGCAGGTGGGCGGGCACTATGTCGGCTAGAGAGACGGGATGCACAAGTCATGAATCAATAGGG
66 C-GGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGG
* *
4483314 TGGTTGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAA
130 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAA
*
4483379 TTCATACAATGGTCCCTTAAGACC-TCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTT
195 TTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
4483443 TTCACGATTTTTGAAACCTTTTACGGTTTGAGATTTTTTAAATTTTTTCGAAAGCAGTTTTGGCC
259 TTCACGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTAAATTTTTTCGAAAGGAGTTTTGGCC
* * * *
4483508 CC-AACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAAATCAGCTAAAAACT
324 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
4483572 CGAAGTGTACAAGTTTTTGTTACCATTTGAAAAAAATGTTCCCATTTCAGACACTTTAATGGCTA
389 CGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
4483637 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGCGAGTTCTCGAGGGTTGATGA
454 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGA
*
4483702 GGGATAGGGGTG--AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC
519 GGGATAGGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * ** * *
4483765 CCGACCCCCCCGATCGTCAGAACCCCAATGCCACCAGTCAGGTTCTCCGGTGATGCTCC-GACGA
583 CCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGATCCAG-CGA
* * *
4483829 TGGTGCCCCGATGAAGAAAAAT-GTAGCACCAGCACATTCCCGGGCCCAGCATGTGCTGCCGCAA
646 TGGTGCCCCGACGAAGAAAAATCG-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * * * ***** * *
4483893 CCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTAT-TCTTAGACTGGGAATGAAATC
710 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
* ** * **
4483957 CGTATGCCTGGGCGCTCAGCCGGCCAGA-GGGCTGGGATGCGCAAGCCGGGGATCGTTCGGGTCC
775 AGCGTG-C-GGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCGAGGATCGGCCGGGTCC
* ** *
4484021 CCCTTTATGTGCTGCCGATCCTACTGCCGCAACC
837 CCCTCTACATGCTGCCGATCCTATTGCCGCAACC
* * * *
4484055 CTTGGTTTGGT-TCGATCTTAGAC-GAGGAATGAACTCCGTATGCCTGAGCCAACCGACGAAACG
1 CTCGATCTGGTCT-GATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * *
4484118 AACGGGAGGTTGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
64 AGCGGCA-----GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCG
* * **
4484183 ATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
124 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCT
* * * *
4484248 GGTAAATTCATACAGTGGTCCCTTAAGACC-TCACGTGAAGTTTCATGGGATGACGACTCGTTTT
189 TGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
4484312 CTATTTTTCACGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTTTCGAAAGGAT
253 CTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTGGAGATTTTTTAAA-TTTTTTCGAAAGGAG
* * *
4484377 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGC
316 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
*
4484442 TAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
381 TAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
4484507 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGGGTTCTCCAGG
446 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGG
* *
4484572 TTTGATGAGGGATAGAGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
511 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
4484637 ACACCCCCCCCGGCCCCCCGATCACCGGAACCTCAATGTCGTCGGTCAGGTTCTCCAGTGATGAT
576 ACA--CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGAT
* *
4484702 CCAGCGATGGTGCCTCGACGAAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGCATATGCT
639 CCAGCGATGGTGCCCCGACGAAGAAAAAT-CGAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
4484766 GCCGCAACCATCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
703 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
4484831 CGAAATGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGG
768 CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGG
*
4484896 GTCCCCCTCTACATGTTGCCGATCCTATTGCCGCAACC
833 GTCCCCCTCTACATGCTGCCGATCCTATTGCCGCAACC
* *
4484934 CTTGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
1 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * * *
4484998 CTGGCAGGTGGGCGGGCACTATGTCGGCTAGAGAGACGGGATGCACAAGTCATGAATCAATAGGG
66 C-GGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGG
* *
4485063 TGGTTGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAA
130 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAA
*
4485128 TTCATACAATGGTCCCTTAAGACC-TCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTT
195 TTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
4485192 TTCATGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTAAATTTTTTCGAAAGGAGTTTTGGCC
259 TTCACGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTAAATTTTTTCGAAAGGAGTTTTGGCC
* *
4485257 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGAACAAAAAAATTCAGCTAAAAACT
324 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
4485322 CGAAGTGTACAAGTTTTTTTTACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
389 CGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
4485387 TTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
454 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGA
* ** * * *
4485452 GGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTGCAGCATGGGCACACACCCCC
519 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
4485517 TCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCTGTCAGG-T-T-C-----T--T-CGGCGAT
584 -CGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGATCCAGCGAT
** * * * *
4485571 GGTGCCCCGGTGAAGAAAAAT-GTAGCACCAGCACATGGCCGAGCCCAACATGTGCGGCCGTAAC
647 GGTGCCCCGACGAAGAAAAATCG-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
4485635 CCTCGGTTTGGTCCGATCTTAGACTGGGAATGAAGTCCATATGCTTAGACTGGGAATGAACTCCG
711 CCTC------G---G-TC-----C-------G--GTCC-GAT-CTTAGACTGGGAATGAACTCCG
* ** * * *
4485700 TATTCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCAGCCAGAGGGGCAGGATGCGC
750 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * ** *
4485765 AAGCCG-GAGATCGACCGGGTCCCCCACTGCATGCTGCCAATCCTGCTGCCACAACC
815 AAGCCGAG-GATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTATTGCCGCAACC
* * * * * **
4485821 ATCGGTCCGGTCTGATCTTACACTGGGATTGAACTTTGTATGCCTAAGCCAACCGACGAAACGAG
1 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
4485886 CGGGAGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCAT-AGATCGA
66 CGGCA----GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGA-ATCGA
* * *
4485950 TAGAGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTT
125 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTT
*
4486015 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
190 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * **
4486080 ATTTTTCACGATTTTCGAAACTTTTTACAGTTTGG-GATTTTTTTTAATTTTTTCGGTAGGAGTT
255 ATTTTTCACGATTTTTGAAACTTTTTAC-GGTTGGAGA-TTTTTTAAATTTTTTCGAAAGGAGTT
* * *
4486144 TTGGCCCCATACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAATATTTAGCTA
318 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
*
4486208 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
383 AAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
4486273 TGGCTACTGGCGGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
448 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTT
* *
4486338 TGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTGCCA-CACCCCATCGCACATCATGTGCG--
513 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCATGTGCGCA
*
4486400 CACCCCCCGGCCCCCCGATCCCGTCGGAACCCCAAATAGCCGTCGGTCCAGGTTCTCCGGTG-TG
577 CACCCCCCGGCCCCCCGAT--CGCCGGAACCCC-AAT-GCCGTCGGT-CAGGTTCTCCGGTGATG
* * * * * * *** * *
4486464 CTTC-GATGACGATGCTCCGGTAAAGAAAAAT-GTGGCACCAGCACATGCCCGAGCCCTAGCATA
637 ATCCAG-CGATGGTGCCCCGACGAAGAAAAATCG-AGCACCAGCACATGCCCGAGCCC-AGCATG
* * * *
4486527 TGCTACCCACAACCCTAGGGTCCGGTCCAATCTTACGACTGGGAATGAACTCCGTATGC
699 TGCT-GCCGCAACCCT-CGGTCCGGTCCGATCTTA-GACTGGGAATGAACTCCGTATGC
4486586 TTAGACCTGG
Statistics
Matches: 3744, Mismatches: 420, Indels: 238
0.85 0.10 0.05
Matches are distributed among these distances:
859 1 0.00
860 1 0.00
861 61 0.02
862 1 0.00
864 1 0.00
867 2 0.00
868 68 0.02
869 331 0.09
870 124 0.03
871 288 0.08
872 429 0.11
873 36 0.01
874 175 0.05
875 175 0.05
876 36 0.01
877 25 0.01
878 227 0.06
879 141 0.04
880 151 0.04
881 49 0.01
882 5 0.00
883 1 0.00
884 3 0.00
885 5 0.00
886 3 0.00
887 147 0.04
888 43 0.01
889 7 0.00
890 17 0.00
891 11 0.00
892 396 0.11
893 66 0.02
894 2 0.00
895 1 0.00
896 7 0.00
897 244 0.07
898 332 0.09
899 1 0.00
900 5 0.00
901 64 0.02
902 3 0.00
903 44 0.01
904 7 0.00
905 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGATCCAGCGATGGTG
CCCCGACGAAGAAAAATCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACA
TGCTGCCGATCCTATTGCCGCAACC
Found at i:4486210 original size:892 final size:889
Alignment explanation
Indices: 4483966--4486688 Score: 3318
Period size: 892 Copynumber: 3.1 Consensus size: 889
4483956 CCGTATGCCT
* ** * **
4483966 GGGCGCTCAGCCGGCCAGA-GGGCTGGGATGCGCAAGCCGGGGATCGTTCGGGTCCCCCTTTATG
1 GGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTACA
* * *
4484030 TGCTGCCGATCCTACTGCCGCAACCCTTGGTTTGGT-TCGATCTTAGAC-GAGGAATGAACTCCG
65 TGCTGCCGATCCTATTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTG-GGAATGAACTCCG
* * ** * *
4484093 TATGCCTGAGCCAACCGACGAAACGAACGGGAGGTTGGGCGGGCGGGCACTATGCCAGCCAGAGA
128 TATGCCTAAGCCAACCGACGAAACG-A-GCGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
4484158 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCT
191 GACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** * *
4484223 ATGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAGTGGTCCCTTAAGACCTCACGTGAAG
256 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACCTCACGTGAAG
* * *
4484288 TTTCATGGGATGACGACTCGTTTTCTATTTTTCACGGATTTTTGAAACTTTTTACGGTTCGAGAT
321 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGGGAT
* *
4484353 TTTTTAAATTTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
385 TTTTTAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-
*
4484418 TTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAA
448 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAA
* *
4484483 AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
513 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
4484548 TTAAGGGGGTATGGGTTCTCCAGGTTTGATGAGGGATAGAGGGCCAATACAAGGGCCAAGTACCA
578 TTAAAGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
4484613 GCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCACCGGAACCTCAATGTCG
643 GCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCG
* *
4484678 TCGGTCAGGTTCTCCAGTGATGATCCAGCGATGGTGCCTCGACGAAGAAAAA--TACGACACCAG
706 TCGGTCAGG-TCTCC-----T-AT-CGGCGATGGTGCCCCGACGAAGAAAAATGTA-G-CACCAG
* *
4484741 CACATGCCCGAGCCCAGCATATGCTGCCGCAA--C-C-ATC-G---G-TC-----C---G---G-
761 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGA
*
4484785 --TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
826 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
4484845 GGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC-GAGGATCGGCCGGGTCCCCCTCTACA
1 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGGCCGGGTCCCCCTCTACA
* * *
4484909 TGTTGCCGATCCTATTGCCGCAACCCTTGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTA
65 TGCTGCCGATCCTATTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
4484973 TGCCTAAGCCAACCGACGAAATGAGC--TGGCAGGTGGGCGGGCACTATGTCGGCTAGAGAGACG
130 TGCCTAAGCCAACCGACGAAACGAGCGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * * **
4485036 GGATGCACAAGTCATGAATCAATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCCGCAT
195 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
4485101 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACCTCACGTGAAGTTTC
260 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACCTCACGTGAAGTTTC
* *
4485166 ATGGGAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-GGAGATTTTT
325 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG-GATTTTT
4485230 TAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
389 TAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGC
* * * * *
4485295 GTGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTTTTACCATTTGAAAAAAATG
453 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTG
* *
4485360 TCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAA
518 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
* *
4485425 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACC
583 GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
** * * * *
4485490 CATCGTGCAGCATGGGCACACACCCCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCTGT
648 CATCGCACATCATGTGCGCACACCCCC-CGGCCCC-CCGATCGCCGAAACCCCAATGCCGTCGGT
** *
4485555 CAGGT-T-CT-TCGGCGATGGTGCCCCGGTGAAGAAAAATGTAGCACCAGCACATGGCCGAGCCC
711 CAGGTCTCCTATCGGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCC
* * * * * *
4485617 AACATGTGCGGCCGTAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAAGTCCATATGCTTA
776 AGCATGTGCTGCCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
4485682 GACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACAAGCGTGC
840 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
4485732 GAGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCACTGCAT
1 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTACAT
* ** * * * * * **
4485797 GCTGCCAATCCTGCTGCCACAACCATCGGTCCGGTCTGATCTTACACTGGGATTGAACTTTGTAT
66 GCTGCCGATCCTATTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
4485862 GCCTAAGCCAACCGACGAAACGAGCGGGAGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAAAC
131 GCCTAAGCCAACCGACGAAACGAGC--GAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
4485927 GGGATGCGCAAGCCATAGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACA
194 GGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
4485992 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTT
259 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACC-TCACGTGAAGTT
* * * *
4486056 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTTGGGATTTT
323 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTT
* ** *
4486121 TTTTAATTTTTTCGGTAGGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTTTGG
387 TTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGG
* * *
4486186 CATGCACAAAAATATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
452 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGT
* *
4486251 GTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTATAAAATCTCAAATGCTCTTTAA
517 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
4486316 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTGCCA-CAC
582 AGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-
* *
4486380 CCCATCGCACATCATGTGCG--CACCCCCCGGCCCCCCGATCCCGTCGGAACCCCAAATAGCCGT
646 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT--CGCCGAAACCCC-AAT-GCCGT
* ** * *** *
4486443 CGGTCCAGGTTCTCCGGTGTGCTTCGATGACGATGCTCCGGTAAAGAAAAATGTGGCACCAGCAC
707 CGGT-CAGG-TCTCC--TAT-CGGCGATG--G-TGCCCCGACGAAGAAAAATGTAGCACCAGCAC
* * * * *
4486508 ATGCCCGAGCCCTAGCATATGCTACCCACAACCCTAGGGTCCGGTCCAATCTTACGACTGGGAAT
764 ATGCCCGAGCCC-AGCATGTGCT-GCCGCAACCCT-CGGT-CGGTCCGATCTTA-GACTGGGAAT
* * *
4486573 GAACTCCGTATGCTTAGACCTGGGAATGAACTCCGTTATGCCTAAAGTCCAACCC-TGCAACTAG
824 GAACTCCGTATGCTTAGA-CTGGGAATGAACTCCG-TATGCCT-AAGT-CAACCCACGAAACGAG
4486637 CGTTGC
885 CG-TGC
* * * *
4486643 GGGCGCTCAGCCAGCTAGAGGGGCGGGATGTGCAAGCCGGGGATCG
1 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCG
4486689 ATCAAGCCCA
Statistics
Matches: 1592, Mismatches: 181, Indels: 110
0.85 0.10 0.06
Matches are distributed among these distances:
861 56 0.04
862 2 0.00
863 3 0.00
864 2 0.00
866 1 0.00
867 1 0.00
869 1 0.00
870 7 0.00
871 10 0.01
872 279 0.18
873 39 0.02
874 175 0.11
876 2 0.00
877 1 0.00
878 37 0.02
879 92 0.06
880 5 0.00
882 1 0.00
885 3 0.00
886 2 0.00
887 143 0.09
888 44 0.03
889 7 0.00
890 17 0.01
891 7 0.00
892 403 0.25
893 61 0.04
894 1 0.00
895 1 0.00
896 1 0.00
898 1 0.00
899 1 0.00
900 6 0.00
902 1 0.00
903 40 0.03
904 7 0.00
905 9 0.01
906 13 0.01
907 26 0.02
908 16 0.01
909 6 0.00
910 12 0.01
911 50 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTACAT
GCTGCCGATCCTATTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACCTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG
GTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGT
CTCCTATCGGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
Found at i:4486765 original size:27 final size:27
Alignment explanation
Indices: 4486735--4486787 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
4486725 CCACTCTGAT
*
4486735 CTTAGACTGGGAATGAACTCCATATGG
1 CTTAGACTAGGAATGAACTCCATATGG
*
4486762 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4486788 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCATATGG
Found at i:4486942 original size:26 final size:26
Alignment explanation
Indices: 4486906--4486958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4486896 CCAGTCTGAT
* *
4486906 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4486932 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4486958 C
1 C
4486959 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4488372 original size:251 final size:251
Alignment explanation
Indices: 4487940--4488421 Score: 748
Period size: 251 Copynumber: 1.9 Consensus size: 251
4487930 GGTTTAACCA
4487940 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTAGCAAATTCAAACAATGGTCCCTTA
1 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTAGCAAATTCAAACAATGGTCCCTTA
*
4488005 AGCCTTCACACCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTT
66 AGCCTTCACACCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* * * *
4488070 TTACGGTTCGAGATTTTTTAAAATTTGTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGA
131 TTACGGTTCGAGATTTTTTAAAATTTGTTCAGAAAGAGTTTTGGACCCAAACTTGGTAAACATGA
**
4488135 TCCTTGTATTTTTGTGGGTGTGCACAAAAAAATTCATATTTTTGTGGGTTTGGGGT
196 TCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCATATTTTTGTGGGTTTGGGGT
* * * * *
4488191 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTA
1 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTAGCAAATTCAAACAATGGTCCCTTA
*** * * * *
4488256 AGCCTTCACGTGAAGTTTCATGGGAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTT
66 AGCCTTCACACCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* * *
4488321 TTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCCAAACTTTGTAAACATGA
131 TTACGGTTCGAGATTTTTTAAAATTTGTTCAGAAAGAGTTTTGGACCCAAACTTGGTAAACATGA
* *
4488386 TCCTTGTATTTTTGTTGGCATGCACAAAATAATTCA
196 TCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCA
4488422 GCTAAAAACT
Statistics
Matches: 207, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
251 207 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (251 bp):
CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTAGCAAATTCAAACAATGGTCCCTTA
AGCCTTCACACCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCGAGATTTTTTAAAATTTGTTCAGAAAGAGTTTTGGACCCAAACTTGGTAAACATGA
TCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCATATTTTTGTGGGTTTGGGGT
Found at i:4490378 original size:26 final size:26
Alignment explanation
Indices: 4490349--4490401 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4490339 CCGGTCCGAT
*
4490349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4490375 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4490401 C
1 C
4490402 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4491245 original size:26 final size:26
Alignment explanation
Indices: 4491216--4491268 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4491206 CTGATCCGAT
*
4491216 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4491242 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4491268 C
1 C
4491269 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4492126 original size:25 final size:26
Alignment explanation
Indices: 4492092--4492143 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
4492082 CCAGTCTGAT
4492092 CTTAGACTGGGAATG-ACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4492117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4492143 C
1 C
4492144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4492526 original size:894 final size:900
Alignment explanation
Indices: 4491301--4493009 Score: 2589
Period size: 894 Copynumber: 1.9 Consensus size: 900
4491291 CGTATAGGCA
* * **
4491301 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTCCTGTCGATCCTACTACCGTAACCCTCGGTCT
1 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCATCCTGTCGATCCTACTACCACAACCCTCGGTCT
* ** *
4491366 GATCCAATCTTAGACTGGGAATGAACTGTGTTTGCCCAAGCCAACCGACGAAACGAACGGTCGGG
66 GATCCAATCTTACACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAAC-GTCGGG
*
4491431 CAGGCGAACAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAACCCGTGGATCGATAGGGTGAT
130 CAGGCG-ACAGGCACTACGCCGGCCAGAGAAACAGGATGCGCAACCCGTGGATCGATAGGGTGAT
* * *
4491496 AGGTGGGTTTAGGCACATCTTCATATTTCTGGAAGCCAATGCCATTTTTATGGTTTGTAAATTCA
194 AGGTAGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCA
**
4491561 CACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAC
259 CACAATCATCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTA-
* * *
4491626 GATTTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGTCCCAA
323 GATTTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAA
4491691 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAGAA-AATTCAGCTAAAAACCCGA
388 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AACAATTCAGCTAAAAACCCGA
* * *
4491755 AGTGTACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
452 AGTGCACAAAATTGTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTG
*
4491820 GCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCT-GAGGTTTGACGAGG
517 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG-TCCTCGAGGTTTGACGAGG
* *
4491883 GATAGGGGCCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCC
581 GATAGGGGCCCAATATAACGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCC
* * * *
4491948 GGCCCCCCCGATCGCAGGAAA-CCTAATGCCGTC-GTTCAGGTTCTCCGACGATGCTCCGACGAT
645 GGCCCCCCCAATCGC-CGAAACCCCAATGCCGCCAG-TCAGGTTCTCCGACGATGCTCCGACGAT
* * *
4492011 GGTGCCTCGACAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACC
708 GGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCACAACC
*
4492076 CTCGATCCAGTCTGATCTTAGACTGGGAATG-ACTCCGTATGCTTAGACTGGGAATGAACTCCGT
773 CTCGATCCAGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
4492140 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGAGATGCG
838 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGAGATGCG
* *
4492203 CAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTACCACAACCCTCGGTCT
1 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCATCCTGTCGATCCTACTACCACAACCCTCGGTCT
* ** * *
4492268 GGTCTGATCTTACACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GT-GGGC
66 GATCCAATCTTACACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAACGTCGGGC
* * * * * *
4492330 -GG-G-CGGGCTCTACGCCGGCCAGAGAAACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
131 AGGCGACAGGCACTACGCCGGCCAGAGAAACAGGATGCGCAACCCGTGGATCGATAGGGTGATAG
* *
4492392 GTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
196 GTAGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCACA
*
4492457 CAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCTT-G
261 CAATCATCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT--TTAG
* * * *
4492521 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTCTTCTGAAGGAGTTTTGGCCCCAAA
324 ATTTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAA
* **
4492586 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAG
389 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACCCGAAG
* *
4492651 TGCACAAAATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTTAGACACTTTAATGGCTACTGGC
454 TGCACAAAATTGTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
4492716 AGCAAACCTGTAAAATCTCAAATGGTCTTTAAAGGGGTGTGAGTCCTCGAGGTTTGATGAGGGAT
519 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTCCTCGAGGTTTGACGAGGGAT
* * * *
4492781 AGGGGGCCAATATAACTGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACACCCCCCGGCC
584 AGGGGCCCAATATAACGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
* *
4492846 CCCCCAATCGCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCC
649 CCCCCAATCGCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * ** * *
4492911 CCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATATGCTGGCTCAACCCTCGGT
714 CCGACAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCACAACCCTCGAT
**
4492976 CTGGTCTGATCTTAGACCGGGAATGAACTCCGTA
779 CCAGTCTGATCTTAGACCGGGAATGAACTCCGTA
4493010 CGCCGAAGTC
Statistics
Matches: 727, Mismatches: 72, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
893 6 0.01
894 501 0.69
895 103 0.14
896 3 0.00
897 2 0.00
898 4 0.01
899 2 0.00
901 1 0.00
902 105 0.14
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CAAGCCGGGGATCGACCGGGTCCCCCTCTGCATCCTGTCGATCCTACTACCACAACCCTCGGTCT
GATCCAATCTTACACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAACGTCGGGC
AGGCGACAGGCACTACGCCGGCCAGAGAAACAGGATGCGCAACCCGTGGATCGATAGGGTGATAG
GTAGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCACA
CAATCATCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAGAT
TTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACCCGAAGTG
CACAAAATTGTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTCCTCGAGGTTTGACGAGGGATAG
GGGCCCAATATAACGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCC
CCCAATCGCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
GACAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCACAACCCTCGATCC
AGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGAGATGCG
Found at i:4493250 original size:159 final size:159
Alignment explanation
Indices: 4492965--4493341 Score: 531
Period size: 159 Copynumber: 2.4 Consensus size: 159
4492955 TATGCTGGCT
* * * * *
4492965 CAACCCTCGGTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTACGCCGAAGTCAACCCACGAA
1 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * * * *
4493030 ACAAGCATGGGAGTGCTCAGCCGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGGCCGGGTCC
66 ACAAGCATGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGACCGGGTCC
** *
4493095 CCCTCTGGGTGCTACCGATCCTGCTGCCG
131 CCCTCTGCATGCTACCAATCCTGCTGCCG
* *
4493124 CAACCCTTGGTCTGATCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
1 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * *
4493189 ACGAG-AGTGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTC
66 ACAAGCA-TGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGACCGGGTC
4493253 CCCCTCTGCATGCTACCAATCCTGCTGCCG
130 CCCCTCTGCATGCTACCAATCCTGCTGCCG
* * * * *
4493283 CAACCCTCAGTCGGATCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACC
1 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
4493342 GACGAAATGA
Statistics
Matches: 192, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
158 1 0.01
159 191 0.99
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
ACAAGCATGCGAGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGACCGGGTCC
CCCTCTGCATGCTACCAATCCTGCTGCCG
Found at i:4495553 original size:26 final size:26
Alignment explanation
Indices: 4495517--4495569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4495507 CCGGTCCGAT
4495517 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
4495543 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4495569 C
1 C
4495570 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4496446 original size:26 final size:26
Alignment explanation
Indices: 4496417--4496469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4496407 CCGGTTCGAT
4496417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4496443 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4496469 C
1 C
4496470 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4496639 original size:900 final size:898
Alignment explanation
Indices: 4494881--4498236 Score: 4844
Period size: 900 Copynumber: 3.7 Consensus size: 898
4494871 CGATGCTACT
* * * *
4494881 GCCAGAGAGACGGGATGCACAAGCCGTGAATCGATAGGGTGGTTGGTGGGTTTAGGCACATATTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
4494946 ATATTTCTACGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** * *
4495011 AAGTAAAGTTTCATTTCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGT
130 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-GATTTTTGAAACTTTTTACGGT
** *
4495076 TCGAGATTTTTTAAAATTTTTT-GGAAGGACCTTTGGCCCTAAACTTGGTAGACGTGATCCTTGT
194 TCGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
4495140 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTAACCAT
258 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
4495205 TTGAAAACAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAA
323 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
4495270 ATGCT-TCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
388 ATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
4495334 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCAATCGTAGGAACCC
452 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCATCGGAACCC
* * * *
4495399 CAATGCCGCCGGTCAGGTTCTCCGA-GATGCTTCGACGATGCTG--TCGATGAAGAAAAATGTGG
516 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGG
* * * *
4495461 CACCAGCACATTCCCGAGCCTAGCATGTGCTG-CAGTAACCCTCGGTCCGGTCCGATCTTAGACT
581 CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCA-CAACCCTCGGTCCGGTCCGATCTTAGACT
* * * * *
4495525 GGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
645 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
*
4495590 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCC
710 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCTGGGGATCGGTCGAGTCCCCC
* * *
4495655 TCCACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAAC
774 TCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAAC
* ** *
4495720 TGCACATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGCGGGCGGGCACTACGCCG
838 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCG
* * *
4495781 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGACACATCTCC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
4495846 ATATTTCTACATGCCAATGCCA-TTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 ATATTTCTACGTGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
4495909 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACAGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-GATTTTTGAAACTTTTTACGGTT
* *
4495974 C-AGGATTTTTTCAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGT
195 CGA-GATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
4496038 ATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCAT
258 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
4496103 TTGAAAAAAGTGTCTCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
323 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
4496168 ATTCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
388 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
4496233 ACTACCAGCACCCATCGTACATCATGTGCGCACATCCCCCGGCCCCCCCAATCATCGGAACCCTA
453 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGGAACCCCA
* *
4496298 ATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
518 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGGCA
* * *
4496363 CCAGCACATGCGTGAGCCCAGCATGTGCTGCCACAACCCTGGGTCCGGTTCGATCTTAGACTGGG
583 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* *
4496428 AATGAACTCCGTATGCTTAGACTGGGAATGAATTCTGTATGCCTAAGACAACCCCACGAAACGAG
648 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCCACGAAACGAG
* * * *
4496493 CGTACGGGCGCTCAGCCGGCCAAAGGGTG-GGATGCGCAAG-TCAGGGATCGGTCGGGTCCCCCT
712 CGTGCGGGCGCTCAGCCGGCCAGAGGG-GCGGATGCGCAAGCT-GGGGATCGGTCGAGTCCCCCT
* * * * *
4496556 CTACGTGCTGCCGATGCTGCTGCCGTAACCCTTGGTCTGGTCCAATCTTAGACTAGGAATGAACT
775 CTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACT
* * *
4496621 CCGTATGCCTAAGCCAACCGATGAAACGAGC--A--GGTGGGCGGGCGGGCACTACGCCT
839 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCG
** *
4496677 GCCAGAGAGATAGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
4496742 ATATTTCTATGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACTATGGACCCTTAAGCCTTC
66 ATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4496807 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATGGT
130 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-AGATTTTTGAAACTTTTTACGGT
* *
4496872 TCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
194 TCGAGA-TTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
4496937 ATTTTTGTTGGCATGCACAAACAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
258 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
4497002 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAA
323 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * **
4497067 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGTTGGCCAATATAAGGGCCA
388 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * * *
4497132 AGTACCAGCACATTATCGCACATCATGTGCGCACACCCCCCTAGCCCCCTCGATCATCGGAACCC
453 AGTACCAGCAC-CCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCAATCATCGGAACCC
* * * * * *
4497197 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGCCCCGACGAAGAGAAATGTGG
516 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGG
* * * *
4497262 CACCAGCACATG-CTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACT
581 CACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACT
*
4497326 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACG
645 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
* ** ** *
4497391 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCTGGGGATCGACCTTGTACCCC
710 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GATGCGCAAGCTGGGGATCGGTCGAGTCCCCC
* * * * *
4497456 TCTACGTGCTGCCGATCCTACTGCTACAACCCTCGATCCGGTCTGATCTTAGACTGGAATGAACT
774 TCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACT
* * * * * *
4497521 CCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGAGCTGGCGGGCGGGCACTACGTCG
839 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCG
* * * *
4497581 GCAAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCATATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
4497646 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4497711 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTACT-TTTTTCAGGGTTTTCGAAACTTTTTACGG
130 ACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTTTTCA-GATTTTTGAAACTTTTTACGG
* *
4497775 TTTGAGATTTTTTAAAGTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTG
193 TTCGAGATTTTTTAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
4497840 TATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTAGAACTGTACAACATTTTGTGACCA
257 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * **
4497905 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGATAGCAAACCTGTAAAATCTCA
322 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
4497970 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
387 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
4498035 AAGTACCAGCACCCATCGGACATCATGTGCGCACACCCCCCGG--CCCCCGATCGTCAGAACCCC
452 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGGAACCCC
* * * *
4498098 AATGCCGTCC-TTCAGGTTCTCCGACGATGCTCCGACAATGCTGCCCCGACAAAGAAAAATGCAG
517 AATGCCG-CCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGG
* * * * *
4498162 CACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTG
581 CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTG
4498227 GGAATGAACT
646 GGAATGAACT
4498237 TTGTATGCCT
Statistics
Matches: 2195, Mismatches: 230, Indels: 62
0.88 0.09 0.02
Matches are distributed among these distances:
896 102 0.05
897 160 0.07
898 272 0.12
899 340 0.15
900 553 0.25
901 292 0.13
902 3 0.00
903 36 0.02
904 435 0.20
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACGTGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGATTTTTGAAACTTTTTACGGTTC
GAGATTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGGAACCCCAATG
CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCTACGT
GCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCG
Found at i:4497354 original size:26 final size:26
Alignment explanation
Indices: 4497318--4497370 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4497308 CTGGTCCAAT
4497318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4497344 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4497370 C
1 C
4497371 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4499821 original size:26 final size:25
Alignment explanation
Indices: 4499792--4499843 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
4499782 TCGGTCCGAT
4499792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
4499818 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
4499843 C
1 C
4499844 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:4500736 original size:26 final size:26
Alignment explanation
Indices: 4500696--4500745 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4500686 GTCCGATCTT
*
4500696 AGACTGGGAAAGAACTCCATATGCTG
1 AGACTAGGAAAGAACTCCATATGCTG
* *
4500722 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAAAGAACTCCATATGC
4500746 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (26 bp):
AGACTAGGAAAGAACTCCATATGCTG
Found at i:4502522 original size:26 final size:26
Alignment explanation
Indices: 4502483--4502535 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4502473 CCAGTCAAAT
*
4502483 CTTAAACTGAGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCATATG
* *
4502509 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGAGAATGAACTCCATATG
4502535 C
1 C
4502536 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCATATG
Found at i:4504299 original size:26 final size:26
Alignment explanation
Indices: 4504269--4504321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4504259 CCGTTTCGAT
4504269 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
4504295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
4504321 C
1 C
4504322 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:4504458 original size:903 final size:901
Alignment explanation
Indices: 4498189--4507888 Score: 12548
Period size: 902 Copynumber: 10.9 Consensus size: 901
4498179 GCCCAGCATG
* * * **
4498189 TGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTC-GTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * * *
4498254 CCGATGAAACAAGCGGTCGGGCGGGCGGGCAAGCACTACGTCGGCCAGAGAGATGGGATGTGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * **
4498319 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGATA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
4498384 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
4498449 GACTCGTTTTCTATTTTTCACGA-TTTTCAAA------A---------A-TTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
4498497 TGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGACATGCAAAAAA
325 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
4498562 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTC
390 A-AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4498627 CAG-CACTTTAATGGTTACTGGCAGGAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4498691 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
4498755 T-ATTGTGGGCAC-GCCCCCCGG-CCCCCAATCGCCAGAACCCCAATGCCGTCGGTTAGGTTCTC
584 TCA-TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
4498817 CTATGATGCTCCGACGATGGTG-CCCGTATGAAGAAAAATACGGCACCAGCACATGCCCGGGCCC
648 CGACGATGCTCCGGCGATGGTGCCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** *
4498881 AGCATGTGCTATCGTAACCCT---T--G---G----T---CT-GG--T---CT--G-AT-TTTAG
712 AGCATGTGCTGCCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
4498921 ACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAATGAGTGTGCGGGTGTTCAGTCGGCC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * *
4498986 AGAAGGGCGGGATGTGCAAGCCGGGGATC-AGCCAGGTCCCCCTCTACATGCTACCGATCT
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
4499046 TACTGCCGCAACCCTCGGTTC-ACTCCGATCTTAGACTAGGAATGAAC-CCTGTATGCCTAAGCG
1 TGCTGCCGCAACCCTC-GTTCGA-TCCAATCTTAGACTGGGAATGAACTCC-GTATGCCTAAGCC
* * * * * * *
4499109 AATCGACGAAAGGAGCGGGCAGGCGGGCAGGCAGGCACTACGTCGGTCAGAGAGACGGGATGTGC
63 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * **
4499174 AAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTTGGCACATCTTCATATTTCTGTGTGCCAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
4499239 CACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
4499304 ATGACTCGTTTT-TGTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
258 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** * * * *
4499368 TTCGGAAGGCTTTTTGGTCCCAAACTTTGTAGACTTGATCCTTGTATTTTTGTTGGCTTGCACAA
323 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
4499433 AACAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTGAAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
4499498 TCAGACACTTGATTGGCTACTGGCGGCAAACCTGCAAAATCTTAAATGCTCTTTAA-GGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
4499562 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAACACCCATTGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
4499627 ATCATGTGCGCACACCCCCCCCCGGCCCCTCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTC
583 ATCATGTGCGCACA--CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
4499692 TCCGGCGATGCTCCGACAATGGTTCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCC
646 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
4499757 CAGCATGAGCTGCCGTAACCCTTGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
711 CAGCATGTGCTGCCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
4499822 GACTGGGAATGAACT-CGTATGCCTAAGTCAACACACAAAACGAGCGTGCGGGCGCTCAGCTGGC
776 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
4499886 CAAAGGGGCGGGATGCGTAAGTCGAGGATCGATCAGGTCCCCCTCTGCGTGCTGCCGCTCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** *
4499947 TGCTGCCACAACCCTCAG-TCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTC-GTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
4500011 ACTGACGAAACAAGCGGGC-GAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGC
64 ACCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
4500075 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * * *
4500140 CATTTTCAAGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGTCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
4500205 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAAATTTT
258 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
4500270 TTT-GAATTGAGTTTTGGCCCCATACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
323 TTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
4500334 AAAACATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCAT
387 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
4500399 TTTAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
452 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4500464 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
517 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
4500529 CATCATGTGCGTACA-CCCCCCGACCCCCCGATCGCCGGAACCCCAAAGTCGCCGGTCAGGTTCT
582 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * * *
4500593 CCGACGATGCTCCGGTGATGGTGCCCCGACGAACAAAAATGTAGCACCAACACATGTCTGAGCCC
647 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
4500658 AGTC-TGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCATATGCTG
712 AG-CATGTGCTGCCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
4500722 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCAGCGGG
775 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
4500787 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGTTGTCGATCT
840 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
4500849 TGCTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *
4500914 CCGACGAAACGAGCGGGCAGGCTAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
4500979 GCCGTGGATCGATAGGGTGGCAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
4501044 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** * **
4501109 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTTCAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * *
4501174 CT--AATGGCTTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAA
325 -TGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
4501237 AAAAATTCAGCTAAAAACCCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
4501302 TTAGACACTTTAATGGCTACTGGCAGCCAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTT
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4501367 AGTTCTCGAGGTTTGATGAGGGATAGTGGGCC-ATCATAAGGGCAAAGTACCAGCACCCATCGCA
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * * * *
4501431 CATCATGTGCGCACAGCCCCCCAACCCCTCGATCGCCGAAACCCCAATGCCACCAGTCAGGTTCT
582 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
4501496 -C--CGA--------CGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCGCATGCCCGAGCCC
647 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * ** * *
4501550 AGCATTTGCTGCCGTAACCCTTGGTCCGATCTGATCTTAGACTTTGAATGAACTCCATATGCTTG
712 AGCATGTGCTGCCGTAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
4501615 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGC
776 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
4501680 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGTTCCCCCTCTACGTGCTGTCGATCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
4501741 TGCTACCGTAACACTC-TATCCACTCCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGT-TCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
4501805 ACTGACGAAACGA----GCA----GGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCA
64 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
4501862 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCGCATCTTCATATTTCTGCATGGCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4501927 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGTAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4501992 CGACTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
**
4502057 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTT-TTGGCATGCACAA
324 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAA
* *
4502121 AAAACTTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4502186 TCAGACACTTTACTGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
4502251 AGTTCTCAAGGTTTGGTGAGGGATAGGGGGCTAATATAAGGGCCAACTACCAGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
4502316 ATCATGTGCGCACACCCCCACCCGGCACCCCCGATTGTCGGAACCCCAATGCTGCCGGTCAGGTT
583 ATCATGTGCGCACA-CCCC-CCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
4502381 CTCCGGCGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
645 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * ** * *
4502446 CTAGCATGTGCTACCGTAACCCTCAGG-CCAGTCAAATCTTAAACTGAGAATGAACTCCGTATGC
710 CCAGCATGTGCTGCCGTAACCCTC-GGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
4502510 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCTGCC
773 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
4502575 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATTC
838 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * * * * *
4502639 TGCTGTCATAACCCTAGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAT
1 TGCTGCCGCAACCCTCGTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
4502704 CCGACGAAACGAGCGCGCGGGCGGGCGGGCGAGCACTATGCCGACCCGAGAGACGGGAGGTGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
4502769 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
4502834 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** **
4502899 GACTCCTTTTTTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
4502964 TGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAA
325 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
4503029 ACATTCAGCTAAAAACTCAAAGTGTACAAGA-TTT-TG------TG-----A------CCATTTC
390 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
4503075 AGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
4503139 TTCTCGAGGTTTGATGATGGATAGGAGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * **
4503204 CATGTGCGCACA-CCCCCCGACCCCTCTGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTTT
585 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
4503268 GACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAAATGCTCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
4503333 CATGTGCTGCCATAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
4503398 CTGGGAATGTACTCCGTCTGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACAGGACA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * ** * *
4503463 GAGGGGCTGGATGCGCAAGCCAGGGATCGGTCGGGACCTCCTCTGTGTGCTGTCAATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
4503522 TGCTGTCGTAACCCTTAGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCAA
1 TGCTGCCGCAACCC-TCGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
4503587 CGGGCGAAACGAGCGGGCGGGCGGGCGGACGGGCACTACGTCGGCTAGAGAGACGGGATGTGTAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
4503652 GCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATAGTTCTACATGCCAATGAAA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
4503717 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACTTGAAGTTTCAGGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
4503782 GACTCATTTTTTATTTTTCATGATTTTTGAAAC-TTTTAAGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
4503846 TGGAAAGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAA
325 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
4503911 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
390 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
4503976 AGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTACGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4504041 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
4504106 CATGTGCGCAAACCCCCCCAGGCCCCCCGATCATCGGAACCCTAATGTCGTCGGTCAGGTTCCCC
585 CATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
4504171 GACGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * *
4504236 CATGTGCTGCCACAACCCTCGGTCCGTTTCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGA
714 CATGTGCTGCCGTAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
*
4504301 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
4504366 GAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTATGTTCTGCCGATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
4504425 AGCTGCCGCAACCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAA
1 TGCTGCCGCAACCCTC-GTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
4504490 CCGACGAAACGAGTGGGCAGGCGGGCGGGCGGGCACTACGCCTACCAGAG-GCACGGGATGCGCA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG-ACGGGATGCGCA
*
4504554 AGCTGTGGATCGATAGGGTGGTAGGTGGAG-TTAGGCACATCTTCATATTTCTGCATGCCAATGC
129 AGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* **
4504618 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTTTAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
4504683 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTAAAAATTTT
258 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
4504748 TTTGGAAGGAGTTTTGGCTCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACGA
323 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
4504813 AAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
388 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
4504878 TCAGACACTTTATTGGCTACTAGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGTGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4504943 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
4505008 ATCATGTGCGCACA-CCCCCCGGCCACCCGATCGCCGGAAACCCAATGTCGCCTGTCAGGTTCTC
583 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * *
4505072 CGGCGATGCTTTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCTCA
648 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
4505137 GCATGTGCTGCCGCAACCCTCGGTCCTGTCCGATCTTATACAGGGAAAGAACTCCATATGCTTAG
713 GCATGTGCTGCCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
4505202 ACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGTCGGCC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
4505267 AGAGGGGCGGGATGCGCAAGCCGGGGGTCGGTGGGGTCCCCCTCTACGTGCTGCCAATCC
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *** * *
4505327 TGCTACCACAACCCTCGATCCAGTATGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGTTCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * **
4505392 CCGACGAAACGATTGGGTA----GGCGGGCGAGCACTACGCCATCCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
4505453 GCCGTGGATCGATAGGGTGGCAGGTGGGTTTGGGCACATCTCCATATTTCAGTC-TGCCAATGCC
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCC
*
4505517 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
4505582 CGACTCGTTTTCTATTTTTCACAATTTTCAAAAGTTTTTACGGTTCAGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** ** *
4505647 TTCCAAGGAGTTTTGGCCCCAAGTTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAA
324 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* **
4505712 AAAATTCAGCTAAAAGCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4505777 CGGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
4505842 GTTCTCGAGGTTTGTTAAGGGATAGGGGACCAATATAAGGG-CAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
4505906 TCATGTGCGCACACCCCCCCGGCCCCCTCAATCGTCGGAACCCCAATGCCGTCGATCAAGTTCTC
584 TCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
4505971 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCA
648 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
4506036 GCATGTGCTGTCGCAACCCTCGGTCTGGTCC-ACTCTTAGACTGGGAATGAACTCTGTATGCTTA
713 GCATGTGCTGCCGTAACCCTCGGTC-CGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * ** ** * *
4506100 GACAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGTAGGTGCTCAGCCAGC
776 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
4506165 CAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
** * *
4506226 TGCTGCTACAGCCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCG-TTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
4506291 CCGACG-AA--A---TG-A-GCGGGCGGGTAGGCACTACGTCGGCCAGAGAGAC-GGATGCGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *** *
4506347 GCCATGGATCAATGGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
4506412 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
4506477 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
4506541 TCGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAACCTTATATTTTT-TTGGCATGCACAAAG
325 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
4506605 AAATGCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4506670 AGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
4506735 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
4506800 CATCTACGTACACCCCCGC-GCCCCCCGATCGTCGGAAGCCCAATGCCGCCGGTCAGGTTCTCCG
585 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
4506864 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCGGAGCCAAGC
650 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
4506929 ATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTATAC
715 ATGTGCTGCCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
4506994 TTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGGCAG
779 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
4507059 AGGGGCGGGATGCACAAGTCGGGGATCG-GCTGGGTCCCCCTCTCCCTGCTGCCAATAC
844 AGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATCC
* * * * ** *
4507117 TACTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTATGAATGAACTTCGTA----T--GCCAA
1 TGCTGCCGCAACCCTC-GTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
4507176 CCGACGGAACGAGCGGGCGAACGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
65 CCGACGAAACGAGCGGGC--A--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
4507241 GCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
126 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
4507306 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCA
191 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
4507371 AGACGACTCGTTTTCTCTTTTTCACGA-TTTTCAAACTTTTTACGGTTCGAGACTTTTTAAAATT
256 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
** * * *
4507435 TTTTCAGAAGGAGTTCTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAC
321 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
4507500 AAAAACATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCA
386 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
4507565 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTG
451 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
4507630 TGAGTTCTCAAGGTTTGATGAGGGATAGGTGCCCAATATAAGGGCCAAGTACCAGCACCCATCGC
516 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
4507695 ACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGG-TC
581 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
4507758 TCCGACGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGAGGCACCAGCACATGCCCGAGCC
646 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * *
4507823 CAGCATGTGCTATCGTAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
711 CAGCATGTGCTGCCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
4507888 A
775 A
4507889 AACCAGGGGG
Statistics
Matches: 7750, Mismatches: 925, Indels: 295
0.86 0.10 0.03
Matches are distributed among these distances:
856 12 0.00
857 244 0.03
863 1 0.00
872 96 0.01
873 160 0.02
874 1 0.00
876 8 0.00
877 103 0.01
878 4 0.00
880 1 0.00
882 122 0.02
883 510 0.07
884 469 0.06
885 22 0.00
886 86 0.01
887 92 0.01
888 5 0.00
889 1 0.00
890 6 0.00
891 297 0.04
892 450 0.06
893 90 0.01
894 183 0.02
895 27 0.00
896 1 0.00
897 99 0.01
898 1042 0.13
899 550 0.07
900 123 0.02
901 435 0.06
902 1277 0.16
903 645 0.08
904 284 0.04
905 6 0.00
906 298 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TGCTGCCGCAACCCTCGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:4506099 original size:26 final size:26
Alignment explanation
Indices: 4506070--4506122 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4506060 CTGGTCCACT
*
4506070 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
4506096 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
4506122 C
1 C
4506123 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:4506999 original size:26 final size:26
Alignment explanation
Indices: 4506961--4507013 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4506951 CCGGTCCGAT
*
4506961 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
4506987 CTTATACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4507013 C
1 C
4507014 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4508735 original size:26 final size:26
Alignment explanation
Indices: 4508699--4508751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4508689 TCAATCCTAT
4508699 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
4508725 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4508751 C
1 C
4508752 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4509632 original size:26 final size:26
Alignment explanation
Indices: 4509596--4509648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4509586 CTTGTCCGAT
*
4509596 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4509622 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4509648 C
1 C
4509649 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:4510520 original size:26 final size:26
Alignment explanation
Indices: 4510491--4510543 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4510481 CCGGTCCGAT
4510491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4510517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4510543 C
1 C
4510544 CTAAGTGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4511211 original size:904 final size:902
Alignment explanation
Indices: 4507891--4518429 Score: 13297
Period size: 904 Copynumber: 11.8 Consensus size: 902
4507881 TATGCTTAAA
* *** ** * * *
4507891 CCAGGGGGGCGGGATGCGCAAGCCAAAGATCGACCGAGTCCCCCTCAACGTGCTACCGATCCTG-
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
4507955 T-CGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
66 TAC-TCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
4508019 CGATGAAATGAGCGGGCGGGCGAGCAGGCGGGCACTACGTCGGCCAAAGGGACAGGATGCGCAAG
130 CGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
4508084 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
4508149 TTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
4508214 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTC
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** *
4508279 GGAAGGCA-TTTTGGCCCCAAACTTGGTAGTTGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
389 GAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4508343 AAATTCAGCTAAAAACTCCAAGTGCACAAGATTTTGTGACCA-TTGAAAAAAGTGTCCCCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
4508407 GGACACCTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCACTCTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
4508472 CTCCCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAATTACCAACACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
4508537 CATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCG
648 CATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *** *
4508602 GCGATTCTCC-AGCGATGTTGCCCCGATGAAGAAAAATGTAACACCAGCACATGCTCGAGCTCAG
712 GCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * ** * *
4508666 CATGTGCTGTCGCAACCCTCGGTTCAATCCTATCTTACACTGGGAATGAACTCCGTATGCTTAGA
776 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
4508731 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCGCTCAACAGG
841 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
4508793 CCAGAGGGGCGGGATGCGTAAGCCGTGGATCGATCGGGTCCCCCTTTGCGTGCTGTCGATCCTG-
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
4508857 TCCT-GCCAACCCTCGTTC-AGTCCAATCCTAGACTGGGAATGAACT-CGTATGCGATAAGCCAA
66 TACTCG-CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCC-A
* * * * *
4508919 ATCGATG-AACGAGTGGCGGGCGGGC-GGCGGGCACTACGTC-GCTAGAGAGAC-GGATGCGCAA
128 ACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
4508980 GCCCTGGATCGAT-GGGTGGTAGGT-GGTTTAGGCACATCTTCATATTT-TACGTGCCAATGCCA
193 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
4509042 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AGCCATCACGTGGAAGTTTCATGGCAAGA
258 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGA
*
4509106 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
322 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
4509171 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGTATGCATAAA
387 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4509236 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTT
452 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4509301 TAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
517 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
4509366 GTTCTCGAGGTTTGATGAGGGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACA
582 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * **
4509431 TCATGTGCGCACATCCCCTCGGCCCCCCCCGATCGCCCGAACCCCAATTCCACCGGTCAGGTTCT
647 TCATGTGCGCACA-CCCCCCGG--CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * *
4509496 CCGGCGATGCTCCGGCGATGGTGTCTCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
709 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * ** * *
4509561 AGCATGTGTTGCCGCAACCCTTGGTCTTGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTA
774 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
4509626 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
839 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
4509690 CCAGAAGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACTTGCTGCCAATCCT-A
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
4509754 TGGC-CGCAACCCTCAGTCCGATCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAAC
66 T-ACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
4509818 CGACGAAACGA-------GCGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGT
130 CGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* **
4509876 CGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
*
4509941 TTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
4510006 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTT
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTC
* * * * *
4510071 G-AAGGAGTTTTGCCCCCAAACATGGTAGAAGTTATCCTTGTATTTTTCTTGGCATGCACAAAAA
389 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
4510135 AATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
4510200 GACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
4510265 TCTTGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
4510330 ATGTGCGCACACCCCCCGGCCCCCTTGATCATCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGG
649 ATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * * *
4510395 CGATGCTTCGATGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGTA
713 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
** *
4510460 TGTGCTGTTGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
778 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
4510525 GGGAATGAACTCCGTATGCCTAAGTGAAGCCACGAAACGAGCGTTCGGGCGCTCAGTTC-G
843 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGG
* * *
4510585 CCAGAGGGACGGGATGCGCAAGCCGGGGATCAGTCGGGTACCCCTCTACGTGCTGCCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* ** * *
4510650 TACTAG-AACCCTCGGTCTGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACT
66 TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
4510714 AACGAAACGAGTGG-GCGGCGGGCGGGCGGGCACTACGCCGGCTAGAAGAGACGGGATAACGC-A
131 GACGAAACGAGCGGCG-GGCGGGCGGGCGGGCACTACGCCGGCCAG-AGAGACGGGAT-GCGCAA
* * *
4510777 GCCCTGGATCGACTGGAGGTGGTAGGTGTGTTTAGGCACATCTTCATATCTT-TACGTGCCAATG
193 GCCGTGGATCGA-TAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTACGTGCCAATG
*
4510841 CCA-TTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
255 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * ** *
4510905 GATGACTCGTTTTTTATTTTTCATGATTTTTGAAAGTTTTTGTGGTTCGGGATTTTTTAAGATTT
320 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
4510970 TTTCGAAAGCA-TTTTCGGTCCCAAGCTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCAC
385 TTTCGAAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
4511034 AAAAAGATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
449 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
4511099 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTG
514 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
4511164 TGAGTTTTCGACGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGTACCCATCGC
579 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
4511229 ACATCATGTGCGCACACCCCCACGGCCCCTCGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTC
644 ACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * ** * *
4511294 TCTGACGATGCTCCGGCAATGGTGCCCCGGCGAAGAAAAATGCAACACCAGCACATACCCGAGCC
708 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
* * *
4511359 CAGCATGTGTTGCCGCAACCCTCGGTCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCTT
773 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
4511424 AGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCAG
838 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * *
4511489 CCAGAGGGGTGGGATGTGCAAGCCGGGGATCGGCCGGTTCCCCCTCTACATGTTGCAGATCTTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
4511554 TGC-CGTAACCCTCGGTCTGGTCTGACCTTAGACTGGGAGTGAACTCTGTATGCCTAAGCCAACC
66 TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * **
4511618 GACG-AA--A---G-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATTCGCGAGTT
131 GACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
4511676 GTAGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTT
196 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
4511741 TTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
261 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
4511806 TCGTTTTCTATTTTTCATGA-TTTTCACAAC-TTTTATGGTTCGAGATTTTTTAAAATTTTTT-G
326 TCGTTTTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
4511868 AGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
390 A-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
4511933 AATCCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
4511998 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
4512063 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATATAAGGGCCAAGTACCAGCACTCATC-CG
584 TCTCGAGGTTTGATGAGGGATAGGGGGCC---A-ATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
4512127 GATCATGTGCGCACACCCCCCAGGCCCGCCCGATCGTCGAAACCCCAATACCGTCGATCAGGTTC
645 CATCATGTGCGCACACCCCCC-GGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * ** * ** ** * * * * *
4512192 TCTGAG-GGTGCTTTGAAGATGGTGCCTAGGTGAAGAAAAATGAGGCACCATCGCTTGCCCGAGC
708 TCCG-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
*
4512256 CCAGCATGTGCTGTCGCAACCCT---T---G---G----T---CT-GG--T---CT--G-AT-CT
772 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
4512295 TAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGTTCAGCCG
837 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
4512360 G
902 G
* * * * * * *
4512361 CCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCATCTGCATGTTGCCGATCTTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
4512426 TGCT-GCAACCCTTGGTCCGATCTC-ATCTTAGACTGGGAATAAACTCCGTAGGCCTAAGCCAAC
66 TACTCGCAACCCTCGGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
4512489 CGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
130 CGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
4512554 CCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTGATATTTCTGCGTGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
**
4512619 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
4512684 ACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTTGCTGTTCGGGATTTTTTTAAAA-TTTT
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGGGA-TTTTTTAAAATTTTT
* * *
4512748 TCGCAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCACAAA
387 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4512812 AAAATTCAGCTAAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAAGTGTCCCCAT
452 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCAT
* * * *
4512877 TTAAGACACTTTAATAGCTACGGGCAAGCAAACCTGTAAAATC-CCAATGCTCTTTAA-GGGGTG
515 TTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
4512940 TGAGTTCTAGAGGTTTGATGAGGGATA-AGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGC
579 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * *
4513004 ATATCATGTTTGCACACCCCCCCGGCCCCCCCGATCG-CGGGAACCCTAATACCATCGGTCAGGT
644 ACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGT
** * * * *
4513068 TCTCCGATGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG
706 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAG
* * * *
4513133 CCCAGCATTTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG-ACTCTGTATGC
771 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
4513197 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAACC
836 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
*
4513262 AG
901 GG
* * * * ** *
4513264 CCAGA-GGGCGGGATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTATGTGCTATCGATCTTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
4513328 TA-TCGCAACCCTTGGTCCT-GTCTGATCTTACACTGGGAAT-AACCTTCGTATGCCTAAGCCAA
66 TACTCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGCCAA
* * *
4513390 CCGACGAAACGA--GG-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGATACGGGGTGCGCAAG
129 CCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
4513452 CCGTGGATCAATAGGGTGGTAAGTGCGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* **
4513517 TTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
4513582 ACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTTGCTGTTCGGGATTTTTTAAAATTTTTT
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
4513647 CGCAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCACAAAA
388 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4513712 AAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
4513777 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAATGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
4513842 TTCTCAAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
4513907 CATGTGCGCACACCCCCCCGGGCCCCCCGATCATCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
648 CATGTGCGCACA-CCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** * *
4513972 AGTGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAG
711 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * * *
4514037 CATGTGCTGCCACAATCCTCGGTCTGGTCCGATCTTAGAGTGGGAATGAACTTCGTATGCTTAGA
776 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
4514102 CTAGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCAGGCGCTCAGCCGG
841 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * *
4514164 CCAGAGGGGCGGGATGATCAAGCTGGGGATCGGTTGGGTCCCCCTCTGCGTGCTACCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * *
4514229 TAC-CACAACCCTCAGTTTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
66 TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
4514293 GATGAAAC-A----------AGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
131 GACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ** *
4514347 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCACATTTTTGTGTGCCAATGCCATTC
196 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
4514412 TTACGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
261 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * *
4514477 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
326 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * * *
4514542 AAGGAGTTTTGGTCGCAAACTTTGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATA
391 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
4514607 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGA
456 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
4514672 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
521 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
4514737 TCAAAGTTTGATAAGGGATAGGGGGCCAATATAAGGGACAATTACCAGCACCCATCGCACATCAT
586 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * ** * * *
4514802 GTGGGCACACCGCCCCGGGCCCCCCCGATCG-CCAAACCCTAATATCGTTGGTCAGGTTCACCGA
651 GTGCGCACACC-CCCC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * *
4514866 CGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCA
713 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
* *** * * * *
4514931 TGTGCTACTTTAACCCTCGGTCTGATCCGATCTTAGATTGGCAATGAACTCCGTATGCTTAGACT
778 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* **
4514996 GCGAATGAACTTGGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
843 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
4515056 CCAGAGGGGTGGGACGGGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACATGCTGTCC-ATCCTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG-CCGATCCTG
* * * * * * * * *
4515120 CTGC-CGTAACCCTCGATCCGATCCGATCTTAGGCTGGTAATGAACTCCGTATGCCTCAGCCAAT
65 CTACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
4515184 CGACGAAACGAGCAGGCGGGCGGGCGGACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
130 CGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
4515249 CCATGGATCGATAGGGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTACATGCCAGTCCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
4515314 TTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** *
4515379 ACTCGTTTTGTATTTTTCACGATTTTTTAAACTTTTTACGGTTTTGGATTTTTTTAAATTTTTTC
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * * * *
4515444 GGAAGGAATTTT-GCCCAAAAAGTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATCCATAAAA
389 GAAAGGAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4515508 AAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
4515573 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAATGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
4515638 TTCTCAAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
4515703 CATGTGCGCACACCCCCCCGGGCCCCCCGATCATCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
648 CATGTGCGCACA-CCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** * *
4515768 AGTGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAG
711 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * * *
4515833 CATGTGCTGCCACAATCCTCGGTCTGGTCCGATCTTAGAGTGGGAATGAACTTCGTATGCTTAGA
776 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
4515898 CTAGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCAGGCGCTCAGCCGG
841 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * *
4515960 CCAGAGGGGCGGGATGATCAAGCTGGGGATCGGTTGGGTCCCCCTCTGCGTGCTACCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
4516025 TAC-CACAACCCTCGGTTTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
66 TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
4516089 GATGGAAAC-A----------AGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
131 GA-CGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * **
4516143 TGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCACATTTTTGTGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
4516208 CTTACGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
4516273 CTCGTTTCCTATTTTTCACGATTTTT-AACACTTTTTCCGGTTCGGGATTTTTTAAAATTTTTTT
325 CTCGTTTTCTATTTTTCACGATTTTTGAA-ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
** * * *
4516337 GAAAGGAGTTTTACCCCCAAACTTAGAAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAA
389 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
4516402 AATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
4516467 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
4516532 TCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
4516597 ATGTGCGCACACCCCTCTGGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCACGTTCTCCA
649 ATGTGCGCACACCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
4516662 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGC
712 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
* *
4516727 ATGTGTTGTCGCAACCCT---T---G---G-TC-----C---G---G---TCCG-AT-CTTAGAC
777 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
4516766 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGG
842 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * **
4516827 CCAGAGGGGCGGGATGCGTAACCCAGGCATCGGCCAGGTCCCCCTCTGCGTGCTATCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* ** *
4516892 TA-TTGCAACCCTCGGTCCAGTCCGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
66 TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** *
4516956 GACGAAAC--G-TGCAGGCGGACAGGCGGGCACTACGCTAGCCAGAGAGACGGGATGCACAAGCC
131 GACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
4517018 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
196 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
4517083 TTATGGCTTGTAAATTCATACAATGGTCCCCTT-AGCCTTCACGTGAAGTTTCATGGCAAGACGA
261 TTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
4517147 TTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCG
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
4517212 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAA
390 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
4517277 ATTCAGCTAAAAACTCGAAATGTACAAGATTTTTTTTTTACCATTTGAAGAAAGTGTCTCCATTT
455 ATTCAGCTAAAAACTCGAAGTGTACAAGA---TTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4517342 TAGACATTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
517 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
4517407 GTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
582 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
4517472 TCATGTGCGCACACCGGCCCCTGGCACCCCCGATCGTCAGAACCCCAATGCCG-C---C--GAT-
647 TCATGTGCGCACACC--CCCC-GGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
4517530 T--AG-G-TTCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACTAGCACATGCCCGAGCC
708 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
* * * ** *
4517591 CAGCATGTGCTGCCGTAACCCTCAGTCCAGTCTTATCTTAGATTGGGAATGAACTCCGTATGCTT
773 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
4517656 AGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTTAGTCAG
838 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
4517721 CTAGAGGGGCGAGATGCGCAAGTCAGGGATCGG-CTAGGTCCCCCTCTATGTGCTGCCGATCCTA
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * *
4517785 CTAC-CGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACACCATATGCCTAAGCCAAC
65 CTACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
4517849 CGACGAAACAAGCAGCCGGGCGGGCAGGCGGGCACTACGTCGACCAGAGAGACAGGATACGCAAG
130 CGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
4517914 TCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATGTATTT-TGCATGCCAATGCC
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA--TATTTCTACGTGCCAATGCC
* *
4517978 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTCAAGTTTCATGGCAAGA
257 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
4518043 CAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCTGGATTTTTTAAAATTTTT
322 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
4518108 TTGGAAGGAGTTTTGGCCCCAAACTTAGTATACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
387 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4518173 AAAATTCAGC-AAAGAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAATGTCCCAATT
452 AAAATTCAGCTAAA-AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4518237 TAAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
516 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4518302 AGTTCACGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGC
581 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
4518367 ATCATGTGCGCACACCCCCCGGCCCCCCAATCCTCGAAACCCTAATGCCGCCAGTCAGGTTCT
646 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
4518430 TGTATTTTTG
Statistics
Matches: 8417, Mismatches: 1012, Indels: 419
0.85 0.10 0.04
Matches are distributed among these distances:
866 5 0.00
867 173 0.02
868 73 0.01
869 4 0.00
870 2 0.00
871 1 0.00
872 173 0.02
873 6 0.00
874 295 0.04
875 10 0.00
876 2 0.00
877 192 0.02
878 122 0.01
879 39 0.00
880 183 0.02
881 37 0.00
882 126 0.01
883 63 0.01
884 18 0.00
885 1 0.00
886 1 0.00
887 2 0.00
889 1 0.00
890 1 0.00
891 9 0.00
892 633 0.08
893 786 0.09
894 713 0.08
895 589 0.07
896 254 0.03
897 780 0.09
898 616 0.07
899 451 0.05
900 98 0.01
901 146 0.02
902 208 0.02
903 120 0.01
904 1424 0.17
905 58 0.01
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TACTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
Found at i:4511424 original size:26 final size:26
Alignment explanation
Indices: 4511395--4511446 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4511385 CCGGTCCAAT
*
4511395 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4511421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4511447 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4514108 original size:26 final size:26
Alignment explanation
Indices: 4514070--4514122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4514060 CTGGTCCGAT
* * *
4514070 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4514096 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4514122 C
1 C
4514123 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4515904 original size:26 final size:26
Alignment explanation
Indices: 4515866--4515918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4515856 CTGGTCCGAT
* * *
4515866 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4515892 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4515918 C
1 C
4515919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4517663 original size:26 final size:26
Alignment explanation
Indices: 4517627--4517679 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4517617 CCAGTCTTAT
*
4517627 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4517653 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4517679 C
1 C
4517680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4518720 original size:304 final size:305
Alignment explanation
Indices: 4518139--4518733 Score: 1007
Period size: 304 Copynumber: 2.0 Consensus size: 305
4518129 AACTTAGTAT
*
4518139 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAGAACTCGAAGTGTACAAG
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAGAACTCGAAGTGCACAAG
*
4518204 ATTTTATGACCATTTGAAAAAAATGTCCCAATTTAAGACACTTTAATGGCTACTGGTAGCAAACC
66 ATTTTATGACCATTTGAAAAAAATCTCCCAATTTAAGACACTTTAATGGCTACTGGTAGCAAACC
*
4518269 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTTTGATGAGGGATAGGGGGCC
131 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTCTGATGAGGGATAGGGGGCC
*
4518334 AATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCCCAATC
196 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
*
4518399 CTCGAAACCCTAATGCCGCCAGTCAGGTTCTTGTATTTTTGGTAG
261 CTCGAAACCCCAATGCCGCCAGTCAGGTTCTTGTATTTTTGGTAG
*
4518444 ACGTGATCCTTGTATTTTTG-TGGCATGCATAAAAAAATTCAGCTAAA-AACTCGAAGTGCACAA
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC-AAAGAACTCGAAGTGCACAA
* * * *
4518507 GATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
65 GATTTTATGACCATTTGAAAAAAATCTCCCAATTTAAGACACTTTAATGGCTACTGGTAGCAAAC
* *
4518572 CTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATA-GGGGC
130 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTCTGATGAGGGATAGGGGGC
*
4518636 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGA
195 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-AA
* * *
4518701 TCGTCGGAACCCCAATGCCGCCAGTTAGGTTCT
259 TCCTCGAAACCCCAATGCCGCCAGTCAGGTTCT
4518734 CCGGCAATGC
Statistics
Matches: 272, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
303 66 0.24
304 183 0.67
305 23 0.08
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (305 bp):
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAGAACTCGAAGTGCACAAG
ATTTTATGACCATTTGAAAAAAATCTCCCAATTTAAGACACTTTAATGGCTACTGGTAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTCTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
CTCGAAACCCCAATGCCGCCAGTCAGGTTCTTGTATTTTTGGTAG
Found at i:4518863 original size:26 final size:26
Alignment explanation
Indices: 4518834--4518886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4518824 CCGGTCTGAT
4518834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
4518860 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4518886 C
1 C
4518887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4521275 original size:906 final size:899
Alignment explanation
Indices: 4518437--4521883 Score: 4424
Period size: 906 Copynumber: 3.9 Consensus size: 899
4518427 TCTTGTATTT
* * *
4518437 TTGGTAGACGTGATCCTTGTA-TTTTTGTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
1 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
4518501 GCACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGTA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4518566 GCAAACCTGTAAAATCTCAAATGCTCTTTAAT-GGGGTGTGAGTTCTCGAGGTCTGATGAGGGAT
131 GCAAACCTGTAAAATCTCAAATGCTCTTT-ATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
4518630 A-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * *
4518694 CCCCTGATCGTCGGAACCCCAATGCCGCCAGTTAGGTTCTCCGGCAATGCTCCGACGATGGTGCC
260 CCCCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
** * * * * *
4518759 CCGGTGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATCTACTGTCGCAACCCTCGGT
325 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
4518824 CCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
390 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *** * *
4518889 AAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGTCGATAAGAGGGGTGGGATGCGCAAGCCGG
455 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGG
* * *
4518954 GGATCGAC-CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTAA
520 GGATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGA
* * *
4519018 TCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAAGGAGCGGACGGGTGGGCGG
585 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A---GACGGGCGGGCGG
* * * *
4519083 GCAGGCACAACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATATGGTGGTAGGTGGG
645 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGG
* * * * * * * *
4519148 CTTAGGCACATCTTCATATTT-TTGTGTGCCGATACCATTTTTCTGTCTTGTAAATTCTTACAAT
709 TTTAGGCACATCTTCATATTTCTAGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
4519212 GGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGGCAACTCGTTTTCTAATTTTCATGATTTT
774 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
4519277 TGAAACATTTTGTGGTTTGAGATTTTTTAAACA-TTTTTCGGAAGGAGTTTTGGCCCCAAAC
839 TGAAACTTTTTGCGGTTCGAGATTTTTTAAA-ATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
*
4519338 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGT
1 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4519403 GTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4519468 GCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
4519533 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCCGGC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGC
* * * * * * * * * *
4519598 CACCCCGATCATCAGAACCCTAATGCCACCGGTCAAGTTCTTCGGTGATGCTCCGGCGATGGTTC
259 CCCCCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * *
4519663 CCCGGCAAAGAAAAATGA-GGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCG
324 CCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
4519727 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTTCGTATGC
388 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** * *
4519792 CCAAGTCAACCCATAAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCT
453 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * * * * ** *
4519857 AGGGATCGG-TCGAGTCCCCCTTTGTGTGTTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCT
518 GGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCT
* * * *
4519921 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG--AA-ACGAGCGGACAGGCG
583 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGACGGGCGGGCGGGCG
*
4519983 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTT
648 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-TGGTAGGTGGGTTT
* *
4520048 AGGCACATCTTCATATTTCT-GCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGAT
712 AGGCACATCTTCATATTTCTAGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
4520112 CCCTTAAGCCTTCACGTGATGTTTCGTGGCAAGACGACTGGTTTTCTATTTTTCATGATTTTCGA
777 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * **
4520177 AACTCTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGAAAAAAGTTTTGGCCCCAAAC
842 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * * * * * *
4520235 TTGGAAGACATGATCATTGTATTTCTGTTGGCATGTAC-AAAAAATTCAGCTAAAGACTCGAAGC
1 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * * **
4520299 GTATAAGATTTTCTGACCATTTGAAAAATGTGTCCTCATTTCATACACTTTAATGGCTACTGATA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4520364 GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGATGA-GGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
4520428 GGGGGCCAATATAAGGGCCATGTACCAGCACCCA-CTGCACATCATGTGCGCTCACCCCCCCGGC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA-CCCCCCGGC
* * * * * *
4520492 CCCCCCGATTGTCGGAACCCCAATGCTGCCTGTTAGGTTGTCCGTCGATGCTCCGACGATGGTGC
259 CCCCCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* *
4520557 CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
324 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
4520622 TCTGGTCCGATCTTAGATTGGGTATGAACTTCGTATGCTTGGACTGGGAATGAACTCCGTATGCC
389 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** **
4520687 TAAGTCAACCCACGAAACGAGCGTG-GAGGCGCTCAACCGGCCAGAGAAGCGGGATGCGCAAGCT
454 TAAGTCAACCCACGAAATGAGCGTGCG-GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCT
* * *
4520751 GGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTACAACTCTCGGGTCCGGTC
518 GGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTC-AGTCCGGTC
* * * *
4520815 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCCAACCAACGAAACGAGCGACGGGCGGGC
582 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A--GACGGGCGGGC
* * * * *
4520880 GGGCGGGTCGGCACTATGTCGGCCAGAGATATGGGATGCGTAAGCCGTGGATCGATAGGCTGGTT
643 GGGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-TGGTA
*
4520945 GGTGGGTTTAGGCACATCTTCATATTTCTAG-GTGCCAATGCCATTTTTATGCCTTGTAAATTCA
703 GGTGGGTTTAGGCACATCTTCATATTTCTAGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
4521009 TACAATGGTCCCTTAAGCCTTAAAGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCAC
768 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
4521074 AATTTTTGAAACTTTTTGCGGTTCGGGATTTTATAAAATTTTTTCGAAAGGATTTTTGGCCCAAA
833 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
*
4521139 AA
898 AC
* *
4521141 TTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
1 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
4521206 GTACAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAGAC-CTTTAATGGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4521270 GCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4521334 GGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
* ** * *
4521399 CCCCCGATCGCCAGAACCCCAATGCCATC-GATCAGGTTCTCCGGCGATACTCCGACGATGGTAC
260 CCCCCGATCGTCAGAACCCCAATGCCGCCTG-TCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* *
4521463 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
324 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
4521528 TCCGGTCCGATC-T----T----A-G-ACT--G---GC--A-AC-------GAACTCCGTATGCC
389 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
4521567 TAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGTCGGGCAGAGGGGCGGGATGCGTAAGAC-
454 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-CT
* * * * * **
4521631 GGGGATC-GATCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCTGCAACCCTCAGTCCGGTCT
518 GGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCT
** * * * * *
4521695 GATCTTCTACTGGGAATGAAC-CTGTA-GACCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGA
583 GATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGACGAAAAGA-CGGGCGGGCGGG
* * *
4521758 CGAGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGTGGTAGGTGGGAT
646 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTT
* *
4521823 TAGGCACATCTTCATATTTCTA-CGTGCGAATGCCATTTTTATGGCTTGTGAATTCATACAA
711 TAGGCACATCTTCATATTTCTAGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
4521884 GATTTTGTGA
Statistics
Matches: 2219, Mismatches: 289, Indels: 107
0.85 0.11 0.04
Matches are distributed among these distances:
870 68 0.03
871 44 0.02
873 1 0.00
874 2 0.00
875 10 0.00
877 1 0.00
878 21 0.01
879 28 0.01
880 110 0.05
881 2 0.00
887 2 0.00
890 2 0.00
893 3 0.00
894 268 0.12
895 107 0.05
896 139 0.06
897 261 0.12
898 1 0.00
899 1 0.00
901 23 0.01
902 171 0.08
903 53 0.02
904 1 0.00
905 356 0.16
906 479 0.22
907 65 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGG
GATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGACGGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTAGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
Found at i:4523619 original size:901 final size:900
Alignment explanation
Indices: 4521879--4524878 Score: 4320
Period size: 901 Copynumber: 3.4 Consensus size: 900
4521869 TGTGAATTCA
4521879 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-AA
4521944 -CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
65 GCAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
4522008 GGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCC
130 GGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCC
4522073 CCCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCC
195 CCCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCC
*
4522138 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTC
260 CGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTC
4522203 TGGTTCGATCTTAGACTGGAAATGAACTCCATTTGCTTAGACTGGAATGAACTACGTATGCCTAA
325 TGGTTCGATCTT-GACTGGAAATGAACTCCATTTGCTTAGACTGGAATGAACTACGTATGCCTAA
4522268 GTCAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGACGCGCAAGTCGGGG
389 GTCAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGACGCGCAAGTCGGGG
4522333 ATCAGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCCGAGGTCGAGTTTGATCT
454 ATCAGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCCGAGGTCGAGTTTGATCT
4522398 TAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCG
519 TAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCG
4522463 GGCACTTCGTCGGCCAAAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTA
584 GGCACTTCGTCGGCCAAAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTA
4522528 GGGACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATGGTCC
649 GGGACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATGGTCC
4522593 CTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTTCAAA
714 CTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTTCAAA
4522658 CTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAAGTGTTTTGGCCCTAAACTTGGTCGAT
779 CTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAAGTGTTTTGGCCCTAAACTTGGTCGAT
4522723 CTAATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
844 CTAATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
4522780 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
4522845 CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
66 CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
4522910 GGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCC
131 GGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCC
4522975 CCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCCC
196 CCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCCC
*
4523040 GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTCT
261 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTCT
4523105 GGTTCGATCTTAGACTGGAAATGAACTCCATTTGCTTAGACTGGAATGAACTACGTATGCCTAAG
326 GGTTCGATCTT-GACTGGAAATGAACTCCATTTGCTTAGACTGGAATGAACTACGTATGCCTAAG
*
4523170 TCAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAAGGGCGGGACGCGCAAGTCGGGGA
390 TCAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGACGCGCAAGTCGGGGA
4523235 TCAGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCCGAGGTCGAGTTTGATCTT
455 TCAGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCCGAGGTCGAGTTTGATCTT
4523300 AGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGG
520 AGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGG
4523365 GCACTTCGTCGGCCAAAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAG
585 GCACTTCGTCGGCCAAAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAG
4523430 GGACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATGGTCCC
650 GGACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATGGTCCC
4523495 TTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTTCAAAC
715 TTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTTCAAAC
4523560 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAAGTGTTTTGGCCCTAAACTTGGTCGATC
780 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAAGTGTTTTGGCCCTAAACTTGGTCGATC
4523625 TAATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
845 TAATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
*
4523681 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
* *
4523746 CAAACCTGTAAAATCTCAAATGCACTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGGGGGATAG
66 CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* *
4523810 GGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCT-GGCC
131 GGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCC
*
4523873 CCCCGATCGTCGGAACCCCAA---------T---G--C--C---GA-----C---GATGGTGCCC
195 CCCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCC
* * * *
4523911 CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGT-AACC-C---C
260 CGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTC
* * *
4523971 -----CGGTC----C-GG---T---C-CGA--T-CTTAGACTGGGAATGAACTCCGTATGCCTAA
325 TGGTTCGATCTTGACTGGAAATGAACTCCATTTGCTTAGACT-GGAATGAACTACGTATGCCTAA
* * * * * * * ** * *
4524016 GTCAACCCACGAAATGAGCGTGTGAGCGCTCAGCCGGCCGGAGGGGCGGGATACGTAAGACGGGG
389 GTCAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGACGCGCAAGTCGGGG
* * ** * * * * *
4524081 ATC-GATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCAGTTCGA-TCTGAT
454 ATCAG-TCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCC-GAGGTCGAGTTTGAT
** * * *
4524144 CTTAGACTGGCTATGAACCT--GTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGG
517 CTTAGACTGGGAATG-ACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGG
* * * ** * * * *
4524207 ACGAGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
581 GCGGGCACTTCGTCGGCCA-AAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGG
* ** * * * * * *
4524272 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAGTG
645 TTTAGGGACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATG
* * * * * * **
4524337 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
710 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTT
* * *** * * * * * *
4524402 GAAAATTTTTACCGTTCAGGATTTTTTAAAATTTTTT-CGAAAGGAGTTTCGGCCCCAAACTAGG
775 CAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAA-GTGTTTTGGCCCTAAACTTGG
* * * *
4524466 -CG---TGATCCTTGT-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
839 TCGATCTAATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
4524523 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACAATTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
** * * ** *
4524588 TGAACCTATAAAATCTCAAAAGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAA
66 CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* * ** * **
4524653 GGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCGCACATCATGTTTGTACACCCCCCCGGCCC
131 GGGGCCAATATAAGG-GCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCC
* * * * * * * *
4524718 CCCCGATCG-CTGGAACCCCAATGCCACCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCC
195 CCCCGATCGTC-AGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCC
* * * * * * * *
4524782 CCGACGAATAAAAATGCAGCACCAGCACATG-CCGAAGCCCAGCATTTGCCACCG-CAACTGTCA
259 CCGATGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTACTACCGTAAAC-CTCA
* * * *
4524845 GTCTGGTCCAATCTTGACTGGGAAGGAACTCCAT
322 GTCTGGTTCGATCTTGACTGGAAATGAACTCCAT
4524879 ATGCCTAAGC
Statistics
Matches: 1920, Mismatches: 114, Indels: 136
0.88 0.05 0.06
Matches are distributed among these distances:
842 129 0.07
843 87 0.05
844 6 0.00
845 22 0.01
846 68 0.04
847 336 0.17
848 10 0.01
849 2 0.00
850 1 0.00
853 1 0.00
854 1 0.00
856 2 0.00
857 2 0.00
859 1 0.00
861 1 0.00
862 4 0.00
864 2 0.00
867 1 0.00
870 1 0.00
871 7 0.00
872 113 0.06
874 1 0.00
875 1 0.00
877 1 0.00
880 2 0.00
882 3 0.00
883 1 0.00
885 1 0.00
886 1 0.00
887 3 0.00
890 1 0.00
893 1 0.00
894 2 0.00
899 23 0.01
900 56 0.03
901 1026 0.53
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
CAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCC
CCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGATGCTCCGATGATGGTGCCCC
GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAAACCTCAGTCT
GGTTCGATCTTGACTGGAAATGAACTCCATTTGCTTAGACTGGAATGAACTACGTATGCCTAAGT
CAACCCACGAAACGAACGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGACGCGCAAGTCGGGGAT
CAGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTACCGCAACCCGAGGTCGAGTTTGATCTTA
GACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGG
CACTTCGTCGGCCAAAAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAGG
GACATCTTCATATTTCTATGTGCGAATGCCATTTGTATGGCATGTGAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTAATTTTCATGATTTTTCAAACT
TTTTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAAGTGTTTTGGCCCTAAACTTGGTCGATCT
AATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
Found at i:4525536 original size:713 final size:712
Alignment explanation
Indices: 4524165--4525539 Score: 2075
Period size: 713 Copynumber: 1.9 Consensus size: 712
4524155 TATGAACCTG
* * * *
4524165 TATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGACGAGCACTACACCGACCAGAGA
1 TATGCCTAAGCCAACCGACGAAACAAGCCGGCGGGCGGGCGGA-GAGCACTACACAGACCAAAGA
* *
4524230 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * * *
4524295 GCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAG
130 GCATGCCAATGCCATTTTTAAGCCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAG
4524360 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAATTTTTACCGTTCAGGATT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAATTTTTACCGTTCAGGATT
* *
4524425 TTTTAAAATTTTTTCGAAAGGAGTTTCGGCCCCAAACTAGGCGTGATCCTTGTTTTTTTTTGGCA
260 TTTTAAAATTTTTTCGAAAGGAGTTTCGGCCCCAAACTAGACGTGATCCTTGTTTTTTGTTGGCA
*
4524490 TGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
325 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* ** *
4524555 CTCCATTTCAGACAATTTAATGGCTACTGGCAGTGAACCTATAAAATCTCAAAAGCTTTTTAAGG
390 CCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAAGCTCTTTAAGG
* * *
4524620 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGTCCAAGTAGCAGCACCC
455 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** * * *
4524685 ATCGCACATCATGTTTGTACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCACCAGTC
520 ATCGCACATCATATGCGCACACCCCCCCAGCCCCCCCGATCGCTGGAACACCAATGCCACCAGTC
* * *
4524750 AGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAATAAAAATGCAGCACCAGCACATGCC
585 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCC
4524815 GAAGCCCAGCATTTGCCACCGCAACTGTCAGTCTGGTCCAATCTTGACTGGGAAGGAACTCCA
650 GAAGCCCAGCATTTGCCACCGCAACTGTCAGTCTGGTCCAATCTTGACTGGGAAGGAACTCCA
** *
4524878 TATGCCTAAGCCAACCGACGAAATGAGCCGGCGGGCGGGC-G-G-GCACTACGTCAG-CCAAAGA
1 TATGCCTAAGCCAACCGACGAAACAAGCCGGCGGGCGGGCGGAGAGCACTAC-ACAGACCAAAGA
* *
4524939 GATGGGATACGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
4525004 GCATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATGCAATGGTCACTTAAGCCTTCACGTGAA
130 GCATGCCAATGCCATTTTTA-AGCCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAA
* * * * **
4525068 GTTTCATGGCAAGACGACTTGTTTTTTATTTTTCATAATTTTT-AAAACTTTTTACGGTTTGGGA
194 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAA-TTTTTACCGTTCAGGA
*
4525132 TTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
258 TTTTTTAAAATTTTTTCGAAAGGAGTTTCGGCCCCAAAC----TAGACGTGATCCTTGT-TTTTT
*
4525196 GTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
318 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * *
4525261 AATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
383 AAAGTGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAAGCTC
* * * *
4525326 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTTAGGGATAGGGGGCCAATATAAGGGCCATGTACC
448 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
4525391 AGCACCCATCGCACATCATATGCGCACACCCCCCCAGCCCCCCCGATCG-TCGGAACACCAATGC
513 AGCACCCATCGCACATCATATGCGCACACCCCCCCAGCCCCCCCGATCGCT-GGAACACCAATGC
* * * *
4525455 CACCAGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAGGAAAAATACGGCACCAG
577 CACCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAG
4525520 CACATGCTCG-AGCCCAGCAT
642 CACATGC-CGAAGCCCAGCAT
4525540 GTGCTGTCAC
Statistics
Matches: 595, Mismatches: 57, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
708 28 0.05
709 196 0.33
710 3 0.01
712 17 0.03
713 349 0.59
714 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
TATGCCTAAGCCAACCGACGAAACAAGCCGGCGGGCGGGCGGAGAGCACTACACAGACCAAAGAG
ACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CATGCCAATGCCATTTTTAAGCCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAATTTTTACCGTTCAGGATTT
TTTAAAATTTTTTCGAAAGGAGTTTCGGCCCCAAACTAGACGTGATCCTTGTTTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAAGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATATGCGCACACCCCCCCAGCCCCCCCGATCGCTGGAACACCAATGCCACCAGTCA
GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCG
AAGCCCAGCATTTGCCACCGCAACTGTCAGTCTGGTCCAATCTTGACTGGGAAGGAACTCCA
Found at i:4527007 original size:898 final size:894
Alignment explanation
Indices: 4524855--4527518 Score: 3762
Period size: 898 Copynumber: 3.0 Consensus size: 894
4524845 GTCTGGTCCA
* * *
4524855 ATCTT-GACTGGGAAGGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCCGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGCG
* * * * * *
4524919 GGCACTACGTCAGCCAAAGAGATGGGATACGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * *
4524984 AGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATGCAATGGT
131 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGT
* * * * *
4525048 -CACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCATAATTTTTA
195 CCA-TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
4525112 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTA
259 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
4525176 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTGTACAA
*
4525241 GATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4525306 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTTAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGC
* *
4525371 CAATATAAGGGCCATGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCAGCCCCCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCG
* * * * * *
4525436 ATCGTCGGAACACCAATGCCACCAGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACG
581 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTC-CGCGATGCTCCGAC-ATGGTGCCCCGACG
* * * * *
4525501 AGGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGTC
644 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* * *
4525566 TGATCTTCAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTCG
709 TGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * * *
4525631 ATCCATGAAGCGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATTG
774 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCG
* * * * * * * * *
4525696 GCCGAGTCCCCCTCTACATGCTGTCAATCCTACTACTGTAACCCTCTGTCCGGTTTG
838 GTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCGCAACCCTCTGTCCAGTCTG
* * *
4525753 ATTTTAGACTGGGAATGAACTGCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCG---G
* * *
4525818 TGCGGGCACTACGCTGCCCAAAGAGAC-GGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
63 -GCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
4525882 GTTTAGGCACATCATCATATTTCTATGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
4525947 GGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTTTCTATTTTTCACGATTTT
192 GGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
* *
4526012 TGAAACTTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTG
257 TGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
4526076 GTAGACATGATACTTGTATTTTTCTTGGCATGCACAAAAACATTCAGATAAAAACTCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* *
4526141 CAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
4526206 AACCGGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGAGATAGGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GATAGGG
* * *
4526271 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCTCACCCCCCGGCCCCCC
514 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCC
* *
4526336 TGATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGA
579 CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGAC-ATGGTGCCCCGA
* * *
4526401 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTCGCAACCCTTGGTCTGG
642 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
* * * * *
4526466 TCTGATCTTCGACTGGAAATGAACTCTGTATGCTTAGACTGTGAATGAACTCTATATGCCAAAGT
707 TCTGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * *
4526531 CAAGCCATGAAACGAGCGTACGGGCACTCAGCTGGCCAGAGGGGCGGATGCACAAGTCGGGGATC
772 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATC
* * * *
4526596 GGTCGGGTTCCCCTCTGCATGCTGCCAATCCTGTTACCGCAA-CCTTTGGTTCAGTCTG
837 GGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCGCAACCCTCT-GTCCAGTCTG
* * * *
4526654 ATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATGAAATGAGCGGGTGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGCG
* *
4526719 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTT
66 GGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
4526784 AGGAACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
4526849 CATTAGGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * **
4526914 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGCA-TTCTAGCATCAAACTTGGTAG
261 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAG
* *
4526978 ACGTGATCCTTGTATTTTTGTTAGCATGCACAAGGAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
4527043 ATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* **
4527108 TGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCTTGGTTTGATGAGGCATAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG-ATAGGGGGCC
4527173 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGAT
* **
4527238 CG-CTGAAACCCCAATGCCGTCGGTCAGGTTCT-C-CG--G---CG--ATGGTGCCCCGGTGAAG
583 CGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACATGGTGCCCCGACGAAG
* * * *
4527293 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGGGTCCGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGA
* * * *
4527358 TCTTAGATTGGGAATGAACTCCGTATGCTTAGTCAGGGAATGAACTCTGTATGCCTAAGTCAACC
712 TCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * *
4527423 CACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTT
777 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGGTC
** *
4527488 GGGTCCCCCTCTGTGTGCTACCAATCCTGCT
841 GGGTCCCCCTCTGCATGCTGCCAATCCTGCT
4527519 GCCAATGCCA
Statistics
Matches: 1566, Mismatches: 180, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
887 164 0.10
888 46 0.03
890 2 0.00
893 1 0.00
895 2 0.00
897 26 0.02
898 484 0.31
899 54 0.03
900 4 0.00
901 110 0.07
902 398 0.25
903 275 0.18
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGCG
GGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGT
CGAAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTT
CGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCATGCTGCCAATCCTGCTACCGCAACCCTCTGTCCAGTCTG
Found at i:4528109 original size:26 final size:26
Alignment explanation
Indices: 4528073--4528125 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4528063 CGGTTCTGAT
4528073 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4528099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4528125 C
1 C
4528126 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4530674 original size:26 final size:26
Alignment explanation
Indices: 4530645--4530697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4530635 CCGATCTAAT
4530645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4530671 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4530697 C
1 C
4530698 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4532770 original size:876 final size:872
Alignment explanation
Indices: 4529164--4534047 Score: 5360
Period size: 896 Copynumber: 5.5 Consensus size: 872
4529154 GCGGGCGGGC
* ** *
4529164 GGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGGCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* **
4529229 ATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTTGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * * *
4529294 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTTGAA
131 GTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACAGTTCGAGATTTTTTAAAATTTTTTCGAA
* * *
4529358 AGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCATAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
4529423 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
4529488 ACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* ** *
4529553 CGAGGCTTGATGAGGGCCAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATG
390 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * * *
4529618 TGCGCACACCCCTCCGGCCGCCCCGATCACCGAAACCCCAATGCTGCCGGTCATGTTCTCCGATG
455 TGCGCACACCCC-CCCGCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CG
* * * ** * * * *** *
4529683 ATGGTCCGACGATGGTGCCCCAACCCCAAGCCCAGCATG-TGCGGCC-GCA-A-CCCTTGGTTCG
518 ATGGTCCG--GATGGTGCCCCGA--CGAAG--AAAAATGCAGC-ACCAGCACATGCC-TGACCCA
* * * * * * * *
4529744 GTATGATCTTAGACTGGGAA---TGAAATCC-G-T--ATGCTTCGACTAGGAATGAA-TTCGTAT
575 GCATG-TGTT-G-C-CGCAACCCT-CAGTCCGGTTCGAT-CTTAGACTAGGAATGAACTCCGTAT
* * * * * *
4529801 GCCTAAGTCAACTCA-TGAAACGAGCATGCAGGCGCTCAGCCGACCAGAGGGACGGGATGCACAA
634 GCCTAAGTCAACCCACTGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
4529865 GCCGAGGATCGACCGGGTCACCCTTTGCGCGTTGCCGATCCTGTTGCCGCAACCCCCGGTCCGAT
699 GCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGT-CTA-
* * *
4529930 GT--GATCTTAGACTGGGAATGAACTCCATATACCTAAGACAA-T-AG--ATGAAACGAGCGGA-
762 GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGAGAAATG-AACGGGCGGAG
* * *
4529988 --CGGGCGGGCACTATGTCGGCCAGAGAGAC-GGATGCACAAGCCGT
826 GGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * *
4530032 GGATCGGTAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTA
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
4530097 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
4530162 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTCGGAA
131 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAA
* * * *
4530227 GGAGTTTCGACCCCAAGCTTGGTAGACGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * * *
4530292 CAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAATTGTCTTCAATTT-AGAC
261 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCCATTTCAGAC
* * *
4530356 ACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGCGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * * *
4530421 CGAGGTTTGATGAGGGATAGGGGGATATTATACGGGCTAAGTACCAGCACCCATCGCACATCATG
390 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
4530486 TGCGCACACCCCCCTCG--GCCCCTTGATCGTCGGAACCCCAATGTCGCAGGTCAGGTTCTCCGG
455 TGCGCACACCCCCC-CGCCGCCCC--GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G
* * **
4530549 CGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAACCCAGCA
516 CGATGGTCC-G-GATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATG-CCTGACCCAGCA
* * * * * *
4530614 AGTGCTGCTGGAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGCCT
578 TGTGTTGCCGCAA----C---CC--TC-AGTC-----C--GG--T----T-CG-AT-CTTAGACT
* * * *
4530679 GGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACTAGCGTACGGGCGCTCAGTCGGCCAG
617 AGGAATGAACTCCGTATGCCTAAGTCAACCCACTGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * **
4530743 AAGGGGCAGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTAT
682 -AGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
*
4530808 CGCAACCCTCGGTCT-GATCCCATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAA-TCGA
746 CGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACT-GA
* * * * * *
4530870 -CAA--AACGAGC---GGGCGGGCGGGCACTACTCTGGCCAGAGAGACGGGATGCCCAAGCCGT
809 GAAATGAACGGGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * **
4530928 GGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTAC
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
4530993 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * ** * * *
4531058 ATTTTTTATTTTACGTGATTTTTGAAACTTTTTGA-GGTTCGAGATTTTTCAAAATTTTTTTGAA
131 GTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACAGTTCGAGATTTTTTAAAATTTTTTCGAA
*
4531122 AGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
4531187 TTAGCTAAAAACTCGAAGTGTACACGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
4531252 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGAGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
4531317 CAAGGTTTGATGAGGGATAGGGGGCCAAGATATGGGCCAAGTACCAGCACCCATCGCACATCATG
390 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
4531382 TGCGCAAACCCCCCGGCCCCCCCGATCGTCGGAACCCCACTGCCCCCGGTCAGGTTCT-C-C---
455 TGCGCACACCCCCCCGCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGAT
* * **
4531442 GG--C-AATGATGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCT
520 GGTCCGGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGA-CCCAGCATGTG-T
* *
4531504 T-TCGCAACCATCGGTCTAGTTTGATCTTAGACTGGGAATGAACTCTGTAGCTTAGACTAGGAAT
583 TGCCGCAACC--C--TC-A----G-TC-----C--GG--T----TC-G-ATCTTAGACTAGGAAT
* * * *
4531568 GAACT-CGTATGCCTAGGTCAACCCA-TGAAACGAGCATGCAGGCGCTCAACCGGCCAGA-----
623 GAACTCCGTATGCCTAAGTCAACCCACTGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
4531626 GGGATGCGCAAGCCG-GAGATCGGCTGGGTCCCCCTCTGCGTGCTATCGATCTTGCTGCCGCAAC
688 GGGATGCGCAAGCCGAG-GATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* ** * * * *
4531690 CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGA
752 CCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGA-GAAATGA
* * * * ** *
4531755 ACGGGCGGGCGGGTGGGTGGGCACTACACCAACCAGAGAGATAGGATGCGCAAGCCGT
816 ACGGGC-GGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* ** * *
4531813 GGATCGATGGGGTGGTAGGTGCATTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
*
4531878 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
4531943 GTTTTCTATTTTTTACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAA
131 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAA
* * * *
4532008 GGAGTTTTGGGCCCAAACTTGGTAGCCATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
4532072 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
261 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
4532137 CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCCCTTTAAGGTGGTGTGACTTCTC
326 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* ** *
4532202 GAGGCTTGATGAGGGCCAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGT
391 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** * *
4532267 GCGCACACCCCCCCCAGTCGCCCCGGTCACCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGACG
456 GCGCACA-CCCCCCC-GCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CG
*
4532332 ATGGTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGACCCAGCATGT
518 ATGGTCC-G-GATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGACCCAGCATGT
* *
4532397 GTTGCCGTAACCCTCAGTCCGGTTCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCATC
581 GTTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
4532461 CCACT-AAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCGAGGATCGA
646 CCACTGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA
* * *
4532525 CCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCTAGTCCGATCTTAGAC
711 CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGAC
* *
4532590 TGGGAATGAACTCCGTATGCCTAAGCCAACTGAGGAAATGAGCGGGCGGAAGGGCGGGCGGGCAC
776 TGGGAATGAACTCCATATGCCTAAGCCAACTGA-GAAATGAACGGGCGG-AGGGCGGGCGGGCAC
* *
4532655 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGT
839 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* *
4532689 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAAAGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
4532754 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGGC-AGCT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CT
* * * *
4532818 CGCTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGAA
130 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAA
* * * * *
4532883 AGCATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAATAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
4532948 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTAAAAAAAGTGTCCCCATTTCAGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
4533013 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
4533078 CAAGGTTTGATGAGGGATAGAGGGCCAATCTAAGGGCCAAGTACCAGCACCCATCGCACATCATG
390 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
4533143 TGCGCACACCCCCCCGACC-CACCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTCT-C-CG
455 TGCGCACACCCCCCCG-CCGC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
* * * * * *
4533205 A-----C-GATGGTGCCCCGGCAAAGAAAAATGCAGCCCCAGCATATGCCCGAGCCCAGCATCTA
518 ATGGTCCGGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGA-CCCAGCATGT-
* * * *
4533264 CTT-TCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTACGA
581 GTTGCCGCAACCCTCA---------G-TC-----C--GG--T----T-CGAT-CTTAGACTAGGA
* * * * *
4533328 ATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACAAGCGTGCGGACGCTTAGCCGGACATAGGG
621 ATGAACTCCGTATGCCTAAGTCAACCCACTGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * *
4533392 GTGGGATGCGCAAGCCGAGGA-CAGATCAGGTCCCCCTCTGCATGCTGCTGATCCTGCTGCCGTA
686 GCGGGATGCGCAAGCCGAGGATC-GACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCA
* * *
4533456 ACCCTTGGTC-AGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
750 ACCCTCGGTCTA-GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGA-GAAA
** * * * * * *
4533520 TGAGTGGGTGG-GCAGGCGCGTGGGCACTACGCCGGCCAGAGAGATAGGATTCGCAAGCCAT
813 TGAACGGGCGGAG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* *
4533581 GGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
4533646 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
4533711 GTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAAAA
131 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTC-GAA
**** * *
4533776 ATCCTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAA
195 A-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
4533841 TTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAATGTCCCCATTTCAAA
259 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
4533906 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTC
324 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* **
4533971 TCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGTAAAGTACCAGCACCCATCGCACATCAT
389 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
4534036 GTGAGCTCACCC
454 GTGCGCACACCC
4534048 AGACGGGATG
Statistics
Matches: 3450, Mismatches: 419, Indels: 268
0.83 0.10 0.06
Matches are distributed among these distances:
863 4 0.00
864 7 0.00
865 45 0.01
866 31 0.01
867 9 0.00
868 472 0.14
869 7 0.00
870 10 0.00
871 54 0.02
872 2 0.00
873 5 0.00
875 13 0.00
876 494 0.14
877 224 0.06
879 10 0.00
880 2 0.00
881 9 0.00
882 45 0.01
883 24 0.01
884 264 0.08
885 270 0.08
886 36 0.01
887 3 0.00
889 3 0.00
890 5 0.00
891 11 0.00
892 401 0.12
893 5 0.00
894 267 0.08
895 144 0.04
896 527 0.15
897 46 0.01
898 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGCCGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATG
GTCCGGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGACCCAGCATGTGTTGC
CGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACT
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGG
TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGA
ATGAACTCCATATGCCTAAGCCAACTGAGAAATGAACGGGCGGAGGGCGGGCGGGCACTACGCCG
GCCAGAGAGACAGGATGCGCAAGCCGT
Found at i:4533329 original size:25 final size:26
Alignment explanation
Indices: 4533291--4533342 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4533281 TCGGTCTGAT
**
4533291 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTACGAATGAACTCCGTATG
4533316 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
4533342 C
1 C
4533343 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:4534505 original size:485 final size:487
Alignment explanation
Indices: 4533566--4534532 Score: 1521
Period size: 485 Copynumber: 2.0 Consensus size: 487
4533556 CAGAGAGATA
*
4533566 GGATTCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGT
1 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGT
*
4533631 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
66 GCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
4533696 ATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT
131 ATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT
* * * * *
4533761 TAAATTTTTTCAAAAATCCTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTG
196 TAAATTTTTTCAAAAATCCATTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTGTTG
4533826 GCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAA
261 GCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAA
4533891 TGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCAAATGCTCTTTA
326 TGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCAAATGCTCTTTA
* * * * *
4533956 AGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGTAAAGTACCAGCA
391 AGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGCGCAAAGTACCAGCA
4534021 CCCATCGCACATCATGTGAGCTCACCCAGACG
456 CCCATCGCACATCATGTGAGCTCACCCAGACG
* * * **
4534053 GGATGCGCAAGCCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTGATATTTCTGTGT
1 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGT
*
4534117 GCCAATGCCATTTTTATGCCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTC
66 GCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
4534182 ATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTCGGGA-TTTT
131 ATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC-GGTTCGAGATTTTT
*** **
4534246 TTAATATTTTTT-TGGAA-GGATTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTGT
195 TTAA-ATTTTTTCAAAAATCCATTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTGT
*
4534309 TGGCATGCA-AAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
259 TGGCATGCACAAAAAAATTT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAA
* * * * * *
4534373 AAGTGTCCCCATTTGAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
323 AAATGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCAAATGCTCT
*
4534438 TTAAGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCA
388 TTAAGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGCGCAAAGTACCA
*
4534503 GCACCCATCGCACATCGTGTGAGCTCACCC
453 GCACCCATCGCACATCATGTGAGCTCACCC
4534533 CCTCCTGGCC
Statistics
Matches: 438, Mismatches: 39, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
484 10 0.02
485 238 0.54
486 150 0.34
487 40 0.09
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (487 bp):
GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGT
GCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT
TAAATTTTTTCAAAAATCCATTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTGTTG
GCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAA
TGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCAAATGCTCTTTA
AGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGCGCAAAGTACCAGCA
CCCATCGCACATCATGTGAGCTCACCCAGACG
Found at i:4535795 original size:902 final size:901
Alignment explanation
Indices: 4534048--4535800 Score: 2757
Period size: 902 Copynumber: 1.9 Consensus size: 901
4534038 GAGCTCACCC
* * *
4534048 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGTAGGTGGGTTTAGGCACATCTTGATATTTCT
1 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGTAGGTGAGTTTAGGCACATCTTCATATTTCT
* *
4534113 GTGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAG
66 GCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
4534178 TTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTCGGGAT
131 TTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCAGGTTCGGGAT
*
4534243 TTTTTAATATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTG
196 TTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTG
* * *
4534308 TTGGCATGCAAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
261 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAA
* *
4534373 AAGTGTCCCCATTTGAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
326 AAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
4534438 TTAAGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCA
391 TTAAGGGGGTGTGAGTACTCGAAGTTTCATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCA
* * *
4534503 GCACCCATCGCACATCGTGTGAGCTCACCCCCTCCTGGCCCCCCCGATCGCCGAAACCCGAATGC
456 GCACCCATCGCACATCATGTGAGCTCACCCCCTCCTCGCACCCCCGATCGCCGAAACCCGAATGC
*
4534568 CACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGCTCCAAC
521 CACCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGTGAAGAAAAATGTGCTCCAAC
*** * * *
4534633 ACATGCCCGAGCCCAGCATATACTGTTGCAACCGTCGGTCTGGTCTGATCTTATTCTGGGAATGA
586 ACATGCCCGAGCCCAGCATATACTGCCACAACCCTCGGTCTGGTCTAATCTTAATCTGGGAATGA
* * * *
4534698 ACTCTGTATGCTTAGACTTGGAATGAACTCCATATGCCTATGTCAACCCACGAAATGAGCGTGCA
651 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* * * * *
4534763 AGCGCTCAGCAGGCCAGAGGGGCGGGATGTGCAAGCTGAGGATCGACCGTGCCTCCCTCTGTGTG
716 AGCGCTCAACAGGCCAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGGCCTCCCTCTGTGTG
* * * * * * *
4534828 CTGTCGATCCTACTATCGCAACCCTCGGTCTGATCCAATCTTAGATTGGGAATGAACTTCGTATG
781 CTGCCAATCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATG
4534893 CCTAAGAAAACTGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAG
846 CCTAAGAAAACTGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAG
*
4534949 AGACGGGATGCACAAGCCGTTGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTC
1 AGACGGGATGCACAAGCCGTGGATCGATAGGGT-GTAGGTGAGTTTAGGCACATCTTCATATTTC
* *
4535014 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAA
65 TGCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
4535079 GTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTTC-GGTTCGGGA
130 GTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCAGGTTCGGGA
* * * *
4535143 TTTTTTAATATTTTTTTGGAAGTAGTTTTGGTCCCAAACTTGGTAGACGTAATCCTTGTATTTTT
195 TTTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTT
*
4535208 GTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAATTGTACAAGATTTTGTAACCATTTCGAA
260 GTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTT-GAA
*
4535273 AAAAATGTCCCCATTTCAGACGCTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCT
324 AAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
4535338 CTTTAAGGGGGTGTGAGTACTCGAAGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
389 CTTTAAGGGGGTGTGAGTACTCGAAGTTTCATGAGGGATAGGGGGCCAATATAAGCGCCAAGTAC
* * *
4535403 CAGCACCCATCGCACATCATGT-ATGCTCACCCCCCTCC-CG-ACCCCCTATCGTCGGAACACC-
454 CAGCACCCATCGCACATCATGTGA-GCTCA-CCCCCTCCTCGCACCCCCGATCGCCGAAAC-CCG
*
4535464 AATGCCACCGGTCAGGTTCTCCGGCGATGCTACGACGATGGTGCCCCGGTGAAGAAAAATGTGGC
516 AATGCCACCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGTGAAGAAAAATGT-GC
* ** * * *
4535529 TCCAGCAC-TCGTTCGTGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAATCTG
580 TCCAACACAT-GCCCGAGCCCAGCATATACTGCCACAACCCTCGGTCTGGTCTAATCTTAATCTG
*
4535593 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
644 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
* * *
4535658 TCGTGC-AGACGCTCAACCGGCCAGAGGGGCGGCATGCGCAAGCCGAGGTTCGACCGGGTCC-CC
709 GCGTGCAAG-CGCTCAACAGGCCAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGG-CCTCC
* * *
4535721 CTCTGTGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCCGTTCTAATCTTAGACTAGGAATGAA
772 CTCTGTGTGCTGCCAATCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAA
4535786 CTCCGTATGCCTAAG
837 CTCCGTATGCCTAAG
4535801 CCAACACATG
Statistics
Matches: 775, Mismatches: 68, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
901 234 0.30
902 531 0.69
903 10 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (901 bp):
AGACGGGATGCACAAGCCGTGGATCGATAGGGTGTAGGTGAGTTTAGGCACATCTTCATATTTCT
GCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCAGGTTCGGGAT
TTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCCTGTATTTTTG
TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAA
AAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTACTCGAAGTTTCATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCA
GCACCCATCGCACATCATGTGAGCTCACCCCCTCCTCGCACCCCCGATCGCCGAAACCCGAATGC
CACCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGTGAAGAAAAATGTGCTCCAAC
ACATGCCCGAGCCCAGCATATACTGCCACAACCCTCGGTCTGGTCTAATCTTAATCTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCA
AGCGCTCAACAGGCCAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGGCCTCCCTCTGTGTG
CTGCCAATCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATG
CCTAAGAAAACTGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAG
Found at i:4535953 original size:26 final size:26
Alignment explanation
Indices: 4535924--4535976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4535914 CCGGTCTGAT
*
4535924 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4535950 CTTAGGCTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4535976 C
1 C
4535977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4536928 original size:185 final size:185
Alignment explanation
Indices: 4536612--4537020 Score: 572
Period size: 185 Copynumber: 2.2 Consensus size: 185
4536602 GTGCTGCCAT
* * * *
4536612 AACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATATGCTTAGACTGCGAATGAGCT
1 AACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGCGAATGAACT
* * * *
4536677 CTTTATCCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATG
66 CTGTATCCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTCAACCGACCAGAGGGGCAGGATG
* * * *
4536742 CGCAAGCCAAGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTACTGCCGC
131 CGCAAGCCAAGGATCGACCGGGTCCCCCTCTACGTGCTGCAGATCCTACTGCCGC
* * *
4536797 AACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGCGAATGAACT
* *
4536862 -TCGTATGCCTAAGTCAACCCACAAAAT-AAGCGTGCGGGCACTCAACCGACCAGAGGGGTAGGA
66 CT-GTATCCCTAAGTCAACCCACAAAATGAA-CGTGCGGGCACTCAACCGACCAGAGGGGCAGGA
* ** *
4536925 TGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCAGATCCTGCTGCCGC
129 TGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTACGTGCTGCAGATCCTACTGCCGC
*
4536982 AACCCTCGGCCCAGT-TCGATCTTAGACTAGGAATGAACT
1 AACCCTCGGTCCAGTCT-GATCTTAGACTAGGAATGAACT
4537021 TCGTATGCCT
Statistics
Matches: 198, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
184 4 0.02
185 194 0.98
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (185 bp):
AACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGCGAATGAACT
CTGTATCCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTCAACCGACCAGAGGGGCAGGATG
CGCAAGCCAAGGATCGACCGGGTCCCCCTCTACGTGCTGCAGATCCTACTGCCGC
Found at i:4538395 original size:26 final size:26
Alignment explanation
Indices: 4538359--4538409 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4538349 GGTCTGATCT
*
4538359 TAGACTGGGAATGAACTTCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
4538385 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
4538410 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:4540458 original size:903 final size:895
Alignment explanation
Indices: 4538715--4540560 Score: 2761
Period size: 903 Copynumber: 2.1 Consensus size: 895
4538705 CCAGTCTGAT
* * * * ** * *
4538715 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACACACAAAATAAGCGTGCGGGCGCTCGGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
4538780 CGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATTGGTCGGGTACCCCTTTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCAGGTACCCCTCTGCATGCTACCGATCC
* * *
4538845 TGCTACCGCAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTGA
131 TGCTACCACAACCCTCAGTCCGGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTCA
* * * * * *
4538910 CTGATGAAACGAGCGGGCGGGCGGGAACTACGTCGGCCAGAGAGACGGGATGTGCAAGGCATGGA
196 CCGACGAAACGAGCGGGCGGGCGGGAACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCACGGA
*
4538975 TCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
4539040 GCTTGTAATTTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
4539105 TTCTATTTTTCATGATTTTTAAAACCTTTTACGGTTTGGGATTTTTTAAATTTTTTTTGGAAGGC
391 TTCTATTTTTCATGATTTTCAAAACCTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
* ** **
4539170 TTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAG
456 GTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCACGCACAAAAAAATTCAG
* *
4539235 CTAAAAACTCACAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAAACACTT
521 CTAAAAAATCACAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
* *
4539300 TAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
586 TAATGGCTACTGGAAGCAAACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAG
*
4539365 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCA
651 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCAATCGCACATCATGTGCA
*
4539430 CAAACCCCCCAGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCT
716 CAAACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCT
** * *
4539495 CCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCTCCAGCACATGCCCGAGCCTAGCATGTGCTG
781 CCACCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
4539560 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCCCATG
846 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCCCATG
*
4539610 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
4539675 CGGCCAGAGGGGCGAGATGTGCAAGCTGGGGATCGGTCAGGTCCCCCTCTGCATGCTACCGATCT
66 CGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCAGGTACCCCTCTGCATGCTACCGATCC
* * * *
4539740 TGGTGCCACAACCCTC-GATCCGGTCTAG-TCTTAGATTGGGAATGAACTCCGTATGCCTAAGC-
131 TGCTACCACAACCCTCAG-TCCGGTC-AGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCT
*
4539802 CATCCGACGAAACGAGCGGGCGGGCGGGCGGGCGTGCACTACGTCGGCCAGAGAGACAGGATGCG
194 CA-CCGACGAAACGA----GCGGGCGGGC--G-G-GAACTACGTCGGCCAGAGAGACAGGATGCG
* * * **
4539867 CTAGCCGCGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
250 CAAGCCACGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
4539932 CCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
315 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
4539997 GACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTT
380 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACCTTTTACAGTTTGGGATTTTTTAAAATTT
* *
4540062 TTTCGGAAGGAGTTTTGAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCTC
445 TTTCGGAAGGAGTTTTG-ACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCACGCAC
*
4540127 AAAAAAATTCAGCTAAAAAATCGA-AGTGTAC-AGCATTTTGTGACCATTTGAATAAAGTGTCCC
509 AAAAAAATTCAGCTAAAAAATC-ACAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
4540190 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAGTGCTCTTTAAGGGGG
572 CATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTATAAAATATCAAATGCTCTTTAAGGGGG
** **
4540255 TGTAAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCAATC
637 TGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCAATC
* *
4540320 GCACATCATGTGCAC-AACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGT
702 GCACATCATGTGCACAAACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGT
* * * *
4540384 TCTCCGACGATGCTCTACCGATGGTGCCCCGACGAAGAAAAATGCAGCACCGGCACATGCCTGAG
767 TCTCCAACGATGCTCCACCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAG
**
4540449 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCTTATG
832 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCCCATG
4540513 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGA
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGA
4540561 TTTTGTGACC
Statistics
Matches: 852, Mismatches: 84, Indels: 22
0.89 0.09 0.02
Matches are distributed among these distances:
894 2 0.00
895 174 0.20
896 2 0.00
899 10 0.01
901 1 0.00
902 3 0.00
903 429 0.50
904 230 0.27
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCAGGTACCCCTCTGCATGCTACCGATCC
TGCTACCACAACCCTCAGTCCGGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTCA
CCGACGAAACGAGCGGGCGGGCGGGAACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCACGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTCAAAACCTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCACGCACAAAAAAATTCAG
CTAAAAAATCACAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
TAATGGCTACTGGAAGCAAACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCAATCGCACATCATGTGCA
CAAACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCT
CCACCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCCCATG
Found at i:4540898 original size:398 final size:399
Alignment explanation
Indices: 4540161--4540955 Score: 1245
Period size: 398 Copynumber: 2.0 Consensus size: 399
4540151 AGTGTACAGC
4540161 ATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
4540226 TGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
66 TATAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
*
4540291 AATATAAGGGCCATGTACCAGCACCAATCGCACATCATGTGCACAACCCCCCGGCCCCCCCGATC
131 AATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACAACCCCCCGGCCCCCCCGATC
* *
4540356 GTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTACCGATGGTGCCCCGACGAAG
196 GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTACCGATGGCGCCCCGACGAAG
* *
4540421 AAAAATGCAGCACCGGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
261 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
**
4540486 TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
326 TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
4540551 CACGAAACG
391 CACGAAACG
* * *
4540560 ATTTTGTGACCATTTGAATAAAGTGTCCCTATTTCAGACACTTTAATGGCTATTGGTAGCAAACC
1 ATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
4540625 TATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
66 TATAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
* ** *
4540689 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAACCCCCCGGCCCGCCCGATC
131 AATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACAACCCCCCGGCCCCCCCGATC
* ** * *
4540754 GCCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCT-T-CGGTGATGGCGCCCTGACGA
196 GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTAC--CGATGGCGCCCCGACGA
* * * ***
4540817 AGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTTTGGTCC
259 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
* * *
4540882 GGTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGTGAATGAACTCCATATGCCTATGTCAA
324 GATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
4540947 CCCACGAAA
389 CCCACGAAA
4540956 TGAGCGTACG
Statistics
Matches: 360, Mismatches: 34, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
396 1 0.00
397 1 0.00
398 275 0.76
399 83 0.23
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (399 bp):
ATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TATAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
AATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACAACCCCCCGGCCCCCCCGATC
GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTACCGATGGCGCCCCGACGAAG
AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACG
Found at i:4540924 original size:26 final size:26
Alignment explanation
Indices: 4540885--4540937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4540875 TTGGTCCGGT
*
4540885 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4540911 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4540937 C
1 C
4540938 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4542716 original size:26 final size:26
Alignment explanation
Indices: 4542680--4542732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4542670 CCGGTCTGAT
*
4542680 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAAACTGGGAATGAACTCCCTATG
4542706 CTTAAACTGGGAATGAACTCCCTATG
1 CTTAAACTGGGAATGAACTCCCTATG
4542732 C
1 C
4542733 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCCTATG
Found at i:4543621 original size:26 final size:26
Alignment explanation
Indices: 4543571--4543623 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4543561 CTGGTCTGAT
* *
4543571 CTTAGACTGTGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
4543597 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
4543623 C
1 C
4543624 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:4545382 original size:26 final size:26
Alignment explanation
Indices: 4545344--4545396 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4545334 CCGGTCCAAT
*
4545344 CTTAGACCGGGAATGAACTCCCTATG
1 CTTAGACCAGGAATGAACTCCCTATG
* *
4545370 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCCTATG
4545396 C
1 C
4545397 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCCTATG
Found at i:4546430 original size:902 final size:900
Alignment explanation
Indices: 4540559--4546652 Score: 7944
Period size: 902 Copynumber: 6.8 Consensus size: 900
4540549 CCCACGAAAC
* * * *
4540559 GATTTTGTGACCATTTGAATAAAGTGTCCCTATTTCAGACACTTTAATGGCTATTGGTAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4540624 CTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
4540688 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAA-CCCCCCGGCCCGCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGGCCC-CCCGA
* ** * * * *
4540752 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTTCGGTGATGGCGCCCTGACGA
195 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
** * * ** *
4540817 AGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTTTGGTCC
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * * *
4540882 GGTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGTGAATGAACTCCATATGCCTATGTCAA
325 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
4540947 CCCACGAAATGAGCGTACGAGTGCTCAGCTGGCCAGAGGGGTGGCATGTGCAAGCTGGGGATCGG
390 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * *
4541012 TCGGGTCCCCCTCTACGTGCTACCGATCTTGCTGCCACAACCCTCGATCCGGTCTAG-TCTTAGA
455 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGA
* * *
4541076 TTGGGAATGAACTCGGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGTGCGTGCA
520 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--GCG-GCA
* * *
4541141 CTGCGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
582 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
4541206 ACATCTTCATATTTCTATGTGCAAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTT
647 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* ** * **
4541271 AAGCCTTCGCGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
712 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
** * * *
4541336 TTTACAATTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGCCCCCAAACTTTGTAGACGTG
777 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * * *
4541401 ATCCTTGTATTTTTTTTCGCATCCATAAAAATATTCAGCTAAAAACTCGATGTGTACAA
842 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4541460 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4541525 CTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
4541590 CAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-ACACCCCCCGGCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAC-CCCCCCGGCCCCCCGA
* * * **
4541654 TCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGGTGA
195 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * *
4541719 AGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCGTCGGTCCGGTCT
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * *
4541784 GATCTTACACTGGGAATGAACTCCGTATGCGTAGACTGTGAATGAACTCCGTATGCCTAAGTCAA
325 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
4541849 CCCACGAAACAAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA
390 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * ** * * *
4541914 TCGGGTTCGCCTCTGTGTGCTGTCGATCCTACTACCGCAACCCTCCATCTGATCCA-ATCTTAGA
455 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGA
* * * * *
4541978 CTGGGAATGAACTCCGTATGCCTAAGCGAACCGAGGAAA-TA---AGCGGGCGGACG-GGCACTA
520 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGCACTA
** * ** *
4542038 TACCAGCCAGAGAGACGACATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
585 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
4542103 TCTTCATATTTTTTTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAG
650 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
4542168 CCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
715 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
4542233 ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATC
780 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
4542298 CTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
845 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
4542354 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAG-AAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
4542418 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * * *
4542482 CACTATAAGGGCAAAGTACCAACACCCATCACACATCATGTGCGC-ACACCCCCCGACCCCCCTG
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAC-CCCCCCGGCCCCCC-G
* * * * * * *
4542546 ATCGCCGGAGCCCCAATGTCGCCGGTCAGGTTCTCCGACGATACTCCGGCAATGGTGCCCCGGCG
194 ATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* *
4542611 ATGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
259 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
4542676 TGATCTTAGACTGGGAATGAACTCCCTATGCTTAAACTGGGAATGAACTCCCTATGCCTAAGTCA
324 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
4542741 ACACCA-GAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
389 AC-CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
*** * * * * * *
4542805 AACCGGGTCCCCCACTGCGTGCTGCCGATCTTGCTGCCACAACCCTCAGTCCGATCCA-ATCTTA
453 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTA
* *
4542869 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGG
518 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--GC-GG
* * *
4542934 CACTACGTCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
580 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * ** * *
4542999 ACACATCATCATATTTCTGCGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAGTGGTCCC
645 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
4543064 TTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCAAGATTTTTGAAAC
710 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * *
4543129 TTTTTACGGTTCGAGATTTTTTAAGATCTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACG
775 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
4543194 TGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAA
840 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
4543255 GATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACGGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4543320 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
4543385 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC-ACACCCCCCGGCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAC-CCCCCCGGCCCCCCGA
* * * * * *
4543449 TCGCCGGAACCCCATTACCGCCGGTCAAGTTCT-C--CGA--------CGATGGTACCCCGACGA
195 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
4543503 AGAAAAATACGGCACCAGCACTTGTCCGA-CCCTGACATGTGCTTCCGCAACCCTCGGTCTGGTC
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAACCCTCGGTCCGGTC
* **
4543567 TGATCTTAGACTGTGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
324 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
4543632 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGGAAGCCGAGGATCG
389 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* *** * *
4543697 GTCGGGTCCCCCTCTGCATGCTGTTAATCTTGCTGCTGCAACCCTCGGTCCGGTC-AGATCTTAG
454 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAG
* *
4543761 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG-GGCACT
519 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGCACT
* * * * *
4543825 ACGCCGGCCATAGAGACGGGATGTGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAG
584 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** * *
4543890 ATCTTCATATTTCTACATGCGAATGCTATTTTTATGGCTTGTAAAATTCATACAAATGGTCCCTT
649 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT-AAATTCATAC-AATGGTCCCTT
* * * * * *
4543955 CAGCCTTCACGTCAAGTTTCGTGGCAAGACGACTCATTTTCTATTATTCACGATTTTTGAAACTT
712 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
** * * * * * * *
4544020 TTTGTGGTTCGAGATTTTGTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAAGTTTGTAGACATG
777 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
4544085 ATACTTTTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAA
842 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
4544144 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* **
4544209 CTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * *
4544274 CAATATAAGGGCCAAGTGCTAGCACCCATCACACATCATGTGCGC-A------C-ACCCCCCGAT
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGGCCCCCCGAT
** * * * * *
4544331 CATCGAAACCCTAATG-C-T--G-CCGG-T-T---A-GGTTCTCCGGCGATGGTGCCCCGACAAA
196 CGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * * **
4544385 GAAAAATGCGGCCCCAGCACATGCCCGAACCCAGCATGTGCCGCCACAATCCTCGGTCTAGTCTG
261 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
** * *
4544450 ATCTTAGACTGGGAATGAACTTTGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
326 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * * *
4544515 ACACGAAATAAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGT
391 CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * **
4544580 CGGGCCCCCCTCTGCATGCTGCCAATCCTACTGCCACAACCCTCAATCCGGTC-AGATCTTAGAC
456 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGAC
* * * * * *
4544644 TGGGAATGAACTTCGTATGCCTAAGCCGACTGATGAAACGA----GCGGGCGAGCG-GGAACTAC
521 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGCACTAC
* * * * *
4544704 GTCAGCCAGAGAGACGGGATGCGCAAGGCATGGATCGATAGGGTGGTAGGTGGTTTTAGGCACAT
586 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
4544769 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCTTTAAGG
651 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
4544834 CTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTAAAACCTTTTA
716 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * *
4544899 CGGTTTGAGG-TTTTTT-AAATTTTTTCGAAAGGA-TTTTTGCCCCAAACTTGGCAGACGTGATC
781 CGGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* ** *
4544961 TTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCAAAGTGTACAA
845 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
4545017 GATTTTGTGACCATATAAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
4545082 CTATAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGCGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * *
4545147 CAATATAAGGGCCAACTACCAGCACCCATTGAACATCATGTGCACAACCCCCCCGGCCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGG-CCCCCCGA
* * *
4545212 TCACCGAAA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGTCCCGACGA
195 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
4545276 AGAAAAATGCAGCAACAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGATCCGGTCC
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * *
4545341 AATCTTAGACCGGGAATGAACTCCCTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
325 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
4545406 CCCAAAAAACGAGCGTACGGGGGCTCAGCCGACCAGAGGGGCGGGATGTGCAAGCCGGGGATCTG
390 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * *
4545471 TCGGGTCCCCCTCTGTGTGCTGTCGATCTTGCTGCCGCAA-CCTCGATCCGGTCTAG-TCTTAGA
455 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGA
* * *
4545534 TTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGCTCGTGCA
520 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG--CG-GCA
*
4545599 CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
582 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
4545664 ACATCTTCATATTTCTATGTGCCAACGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTT
647 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
4545729 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTT
712 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
4545794 TTTGCAGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTG
777 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * * *
4545859 ATCCTTGTATTTTTTTTTGCATCCATAAAAAAATTCAGGTAAAAACTCGATGTGTACAA
842 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4545918 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4545983 CTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * *
4546048 CAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACAACCCCCCCAGCCTCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGGCC-CCCCGA
* * * *
4546113 TCGCCGAAATCCCAATGCCATCGGCCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGA
195 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * *
4546178 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCAT-GATCTGGTC
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCCGGTC
* * * *
4546242 CGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTA
324 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
4546307 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGG-TGTGCAAGCCGGGGATCG
389 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
4546371 GTCGGCTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCTGATCTAG-TCTTAG
454 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAG
* * * * * *
4546435 ATTGGGAAAGAACTCCATATGCCTAAGCCAACTGACGAAACAAGCTGGCGGGCGGGCGCACGTGC
519 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG--CG-GC
* * * * * *
4546500 GCTACGCCGGCCAGACAGACAGGATGCGAAAGTCGTGGATCGATAGGGTGGTTGGTGGGTTTAGG
581 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
4546565 CACATCTTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
646 CACATCTTCATATTTCTA-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
4546629 TTAAGGCTTCACGTGAAGTTTCAT
710 TTAAGCCTTCACGTGAAGTTTCAT
4546653 TTGTTGGCAT
Statistics
Matches: 4550, Mismatches: 574, Indels: 137
0.86 0.11 0.03
Matches are distributed among these distances:
873 231 0.05
874 16 0.00
875 80 0.02
876 12 0.00
877 112 0.02
880 2 0.00
881 298 0.07
882 22 0.00
883 1 0.00
885 1 0.00
886 3 0.00
887 99 0.02
888 11 0.00
889 337 0.07
890 8 0.00
891 339 0.07
892 311 0.07
893 345 0.08
894 350 0.08
895 11 0.00
896 1 0.00
897 8 0.00
898 12 0.00
899 200 0.04
900 17 0.00
901 743 0.16
902 874 0.19
903 106 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGGCCCCCCGAT
CGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
Found at i:4547437 original size:399 final size:398
Alignment explanation
Indices: 4546700--4547491 Score: 1192
Period size: 399 Copynumber: 2.0 Consensus size: 398
4546690 AAGTGTACAA
*
4546700 GATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAAACACTTTAATGGCTACTGGCAAAAACC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAAAAACC
* * *
4546765 TATAAAATCTTAGATGCTCTTTAAGGGGCTGTGAGTTCGCAAGGTTTGATAACGGATAGGGGGCC
66 TATAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCGCAAGGTTTGATAACGGATAGAGGGCC
* *
4546830 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTGGCCCCCCCGATC
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCGGCCCCCCCGATC
* * *
4546895 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGCCGATGGTGCCCCGACGAAG
196 ACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGCCGATGGCGCCCCGACGAAG
4546960 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
261 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
**
4547025 TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
326 TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
4547090 CACGAAAC
391 CACGAAAC
* * * * *
4547098 GATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA-AAAAC
* * * *
4547163 CTATAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
65 CTATAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCGCAAGGTTTGATAACGGATAGAGGGC
* * *
4547227 CGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAACCCCCCCGGCCCCCCCGA
130 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG-AACACCCCCGGCCCCCCCGA
* ** ** ** *
4547292 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCT-TCGGTGATGGCGCCCTGACG
194 TCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCT-GCCGATGGCGCCCCGACG
* * * ***
4547356 AAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTTTGGTC
258 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
* *
4547421 CGGTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGTGAATGAACTCCATATGCCTAAGTCA
323 CGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
4547486 ACCCAC
388 ACCCAC
4547492 AAAATGAGCG
Statistics
Matches: 352, Mismatches: 39, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
398 127 0.36
399 225 0.64
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (398 bp):
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAAAAACC
TATAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCGCAAGGTTTGATAACGGATAGAGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCGGCCCCCCCGATC
ACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGCCGATGGCGCCCCGACGAAG
AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
TCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAAC
Found at i:4547464 original size:26 final size:26
Alignment explanation
Indices: 4547425--4547477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4547415 TTGGTCCGGT
*
4547425 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4547451 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4547477 C
1 C
4547478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4549216 original size:901 final size:898
Alignment explanation
Indices: 4547098--4553458 Score: 8241
Period size: 902 Copynumber: 7.1 Consensus size: 898
4547088 CCCACGAAAC
* * *
4547098 GATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4547163 CTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
4547227 CGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTA-ACCCCCCCGGCCCCCCCG
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* * * ** * ** * *
4547291 ATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCTTCGGTGATGGCGCCCTGACG
195 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-TCGACGATGCTCCGACGATGGTGCCCCGACG
** * ** *
4547356 AAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTTTGGTC
259 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATC
* * * *
4547421 CGGTCTTAGACTGGGAATGAACTCCTTATGCTTAG-ACTGTGAATGAACTCCATATGCCTAAGTC
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTG-GAATGAACTCCGTATGCCTAAGTC
* * * * * * * * *
4547485 AACCCACAAAATGAGCGTACGAGTGCTCAGCCGGCCAGAGGGGCGGCATGTGCAAGCTGGGGATC
388 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
* ** * * * * *
4547550 GGTCGGGTCCCCCTCTGCGTGCTACCAATCTTGCTGCCGTAACCCTCGATCCGGTCT-AGTCTTA
453 GATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA-TCTTA
* * * * * *
4547614 GATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACCAAATGAGCGGGCGGGCAGGCGTGCGTG
517 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGC-GGCG-GAGGG
* *
4547679 CACTGCGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
580 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4547744 GCACATCTTCATATTTCTATG-TGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCC
645 GCACATCTTCATATTT-T-TGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* ** **
4547808 CTTAAGCCTTCGCGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCATGATTTTCAAAA
708 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
4547873 CTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGCCCCCAAACTTTGTAGAC
773 CTTTTTAC-GGTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
4547938 GTGATCCTTGTATTTTTGTTCGCATCCATAAAAATATTCAGCTAAAAACTCGATGTGTACAA
837 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4548000 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
4548065 CTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
4548130 CAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * ** ** *
4548194 TCGCCGGAACCTCATTGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCTGACGA
196 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGA
* * * *
4548259 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGTCCGGTCT
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCC
** * *
4548323 GATCTTAGACTCAGAATGAACTCCGTATGCTTAGAATTGCAATGAACTACGTATGCCTAAGTCAA
325 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * * * *
4548388 CCCATGAAACAAACGTGCTTGCACTCAGTCAGCCAGAAGGGCGGGATGCGCAAGCCGAGGATC-A
390 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA
* ** * **
4548452 GTCGGGTCCCCCTCTGTGTGCTGTTGATCCTGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGA
455 -TCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
*
4548517 CTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGAGCAGGCGGATGGGCA
519 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGC-GGCGGA-GGGCA
* * * *
4548582 CTACGTCCGCCAGGGAGACGGGATGTGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
582 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
4548647 ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
647 ACATCTTCATATTTTTGC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
4548712 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAATCTT
711 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * *
4548777 TTTACGGTCGGGATTTTTTAAAATTTTTTCAGAAGG-GATTTTGCCCCCAAACTTGGTAGATGTG
776 TTTACGGTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTG
* * * *
4548841 ATCCTTGTATTTTTGTTCGCATGGACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
840 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
4548900 GATTTTGTGACAATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4548964 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGACAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
4549029 CAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * *
4549094 TCGTCGGAACCCCAATGCCGTCGGTTAAGTTTTGTGACGATGCTCCGACGATGGTGCCCCGACGA
196 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGA
* ** * *
4549159 AGAAAAATACGTTACCAGCACATGCCTGAGCACAGCATGTGCTG-CTGCAACCCTCGGTCCGATC
260 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGATC
* ** * *
4549223 CGATCTTAGACTGGAAATGAACTCTATATGCTTAG-ACTGGGATGAACTCCGTATGCCTAAGTCA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
4549287 ACCCACGAAATGAGCGTACGGGCGCCCAGTCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
389 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* * * * * *
4549352 ACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATTTTAGA
454 ATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
** ** *
4549417 CTGGGAATGAACTCTGTATGCCTAAGCCAACTAATAAAATGAGCGGGC--G-GGC---GGGCACT
519 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGCGGAGGGCACT
* * * * *
4549476 ACGTCGGCCAAAAAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGATGGGTTT-GG-GC
584 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
4549539 A----C--A----T-CT-----T--CA----TATGGC-TGTAAATTCATACAATGGTCCCTTAAG
649 ATCTTCATATTTTTGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** *
4549581 CCTTGACAAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTT
714 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* ** * * * *
4549646 GCAATTCGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGGTC
779 AC-GGTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
4549711 CTTGTATTTTT-TATGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
843 CTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4549767 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
4549832 TTGAAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGCGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
4549897 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCCGGCCCCCTC
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCC
* * * *
4549962 GATTGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
194 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * * *
4550027 GAAGAAAAATACGGCACCAACAAATGCCCGTGCCCAGCATGTGCTGCCGCAA-CCTTGCTCCGAT
258 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGAT
* * * * * *
4550091 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTGCATATGCCTAAGTC
323 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTGGAATGAACTCCGTATGCCTAAGTC
* * * *
4550156 AACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGCCATAGGGGCGGGATACGCAAGCCGAGGATC
388 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
* * * ** *
4550221 GATCGAGTCCCCCTCTATGTGCTGCCGATCCTGCTG-TGTAACCCTCGGTCCTATCCGATCTTAG
453 GATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * *
4550285 ACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC-AGGCGGGCGGGAGGG
518 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-GC-GGC-GGAGGG
* * *
4550349 TACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAG
580 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4550414 GCACATCTTCGTATTTCTATG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
645 GCACATCTTCATATTT-T-TGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
4550478 CCTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACT-ATTTTTGAA
708 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAA
* * *
4550542 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAATTGGAAGA
772 ACTTTTTACGG-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
4550607 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCTA-CTAAAAACTCGAAGTGAACAA
836 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAA
* *
4550670 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCACCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
4550735 TTGTAAAATTTCAAATGCTCTTTAAGGTGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGT
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
4550800 CAAAATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCG
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* * *
4550864 ATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCAGTGATGCTCCGGA-GATGGTGCCCCGAC
195 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGA-CGATGCTCC-GACGATGGTGCCCCGAC
**
4550928 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTTGTCCGAT
258 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGAT
* * *
4550993 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ATTGGGAATGAACT-CGTACGCGTAAGT
323 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATT-GGAATGAACTCCGTATGCCTAAGT
* * * *
4551056 CAACCCATGAAACGAGCGTACGGGCGCTCAGCAGGCCAGAGGGGCGGGATGTGCAAGCC-AGGGA
387 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGA
** ** * * * * *
4551120 TCGGCCAAGTCCCCCTCTCTGTGTTGCCGATCCTGCTGCTGCAACCCTTGGTCCGGTCCGATCTT
451 TCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * *
4551185 AGACTGGGAATGAACTTTGTATGCCTAGGCCAACCGACTAAACGAGCGGGCGAGCGG-GCGA--G
516 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGCG-GAGGG
* * * ** *
4551247 CATTACGTCGGCTAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTACGTTT-C
580 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4551311 GCACATCTTCATATTTGTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
645 GCACATCTTCATATTTTTGC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * **
4551376 TTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCCTTTTCTTTTTTTCACGATTTTCAAAAC
709 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
4551441 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTGGACG
774 TTTTTACGG-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
4551506 TCATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
838 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
4551567 GATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4551632 CTGTAAAATCTAAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
4551697 CAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCTCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * *
4551761 TCATCGGAACCCCAATGCC-ACAGGTCAGGTTCTCTGGCGATGCTCCGACGATGGAGCCCC-AGT
196 TCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC-GACGATGCTCCGACGATGGTGCCCCGA-C
* * * *
4551824 GAAGAAAATTGCAGCACCAGCACATGCCCGAGCCCAGC-TAGTGCTGTCGCAACCCTCAGTCTGA
258 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT-GTGCTGTCGCAACCCTCGGTCCGA
* * *
4551888 TCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAG-ATTGGGAATGAACTCCTTATGCCTAAG
322 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATT-GGAATGAACTCCGTATGCCTAAG
* * *
4551952 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGA
386 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
* * * * * * *
4552017 TCGATCGGGTCCCCCTCTGTGTGCTTCC-AGTTCTGCTACCACAACCCTCAGTCTGGT-TCGATC
451 TCGATCGGGTCCCCCTCTATGTGCTGCCGA-TCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATC
* * * *
4552080 TTAGACTGGGAATGAACTC-GATATGCCTAAGCCAACCGACGTAATGAGCGGGCGGGCCGACGGG
514 TTAGACTGGGAATGAACTCTG-TATGCCTAAGCCAACCGACGAAACGAGCGGGCGAG-CGGC-GG
* * * * * * * *
4552144 CGGGCATTACGCCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGCTAGGT
576 AGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
4552209 TTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
641 TTAGGCACATCTTCATATTTTTGC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
4552274 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
705 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
4552339 AGACCTTTTACTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTA
770 AAACTTTTTAC-GGTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
4552404 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAA
834 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** * * *
4552469 GATTTTGTGATAATTTGAAAAAGGTGTCCTCATTTCAGACACCTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
4552534 CTGTAAAATCTCATATGCTTTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
4552599 CAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACACCTCCCTGGCCCCCCCG
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCCG
** * * *
4552664 ATCGTTAGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACG
195 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACG
* * * * *
4552729 AAGAAAAATGTGGCACCAGCACATGCTCAAGCCTAGCATGTGCTGTCGTAACCCTCGGTCC-AGT
259 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-T
* * * * * * *
4552793 CCAATCTTCGACTGGCAATGAACTCCGTATGCTTGGACTGGGAATGAACTTCGTATGCCTAAGTC
323 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTGGAATGAACTCCGTATGCCTAAGTC
* ** * * *
4552858 AACCCACGAAACGAGCATGAAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCAAGGATT
388 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
* ** * * * * *
4552923 GACCGGGTCCCCCTCTACATACTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCT-AGCCTTA
453 GATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA-TCTTA
* * * * *
4552987 GACTGGGAATGAACTCCGTATGCCTAATCCAACTGACGAAAC-A-AGGG-G-GCGG-GCA-GGCA
517 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGCGGAGGGCA
* * * *
4553046 CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGC
582 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
4553111 ACATCTTCATATTTCTATG-TGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
647 ACATCTTCATATTT-T-TGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
4553175 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
710 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * *
4553240 TTTTACGGTTCGAGATTTTTTCAAATTTTTTCGTAA-GAGTTTTGGCCCCAAACTTGGTAGACGT
775 TTTTACGG-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
4553304 GATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAC
839 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4553364 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
4553429 CTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGG
4553459 ATGAGGGATA
Statistics
Matches: 4779, Mismatches: 575, Indels: 217
0.86 0.10 0.04
Matches are distributed among these distances:
866 89 0.02
867 123 0.03
868 149 0.03
869 103 0.02
870 222 0.05
871 4 0.00
873 4 0.00
877 59 0.01
878 3 0.00
879 3 0.00
880 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
890 2 0.00
891 4 0.00
892 58 0.01
895 177 0.04
896 382 0.08
897 557 0.12
898 63 0.01
899 167 0.03
900 401 0.08
901 706 0.15
902 738 0.15
903 448 0.09
904 305 0.06
905 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATTGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGAT
CGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGCGGAGGGCACTAC
GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTTTGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
GGTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
Found at i:4549277 original size:25 final size:26
Alignment explanation
Indices: 4549227--4549278 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
4549217 CCGATCCGAT
*
4549227 CTTAGACTGGAAATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
4549253 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
4549278 C
1 C
4549279 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:4550147 original size:26 final size:26
Alignment explanation
Indices: 4550096--4550148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4550086 CCGATCTGAT
* *
4550096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
4550122 CTTAGACTGGGAATCAACTGCATATG
1 CTTAGACTGGGAATCAACTCCATATG
4550148 C
1 C
4550149 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4555350 original size:26 final size:26
Alignment explanation
Indices: 4555314--4555372 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
4555304 CTCGGTCTGA
4555314 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
4555338 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
4555364 TCCGTATGC
1 TCCGTATGC
4555373 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:4556210 original size:26 final size:26
Alignment explanation
Indices: 4556181--4556233 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4556171 CCGGTCCAAT
4556181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4556207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4556233 C
1 C
4556234 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4556478 original size:25 final size:26
Alignment explanation
Indices: 4556439--4556490 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4556429 CCGGTTCGAT
*
4556439 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4556465 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4556490 C
1 C
4556491 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4557370 original size:26 final size:26
Alignment explanation
Indices: 4557341--4557393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4557331 TCGGTCCGAT
*
4557341 CTTAGACTGGGAATAAACTCCGGATG
1 CTTAGACTAGGAATAAACTCCGGATG
* *
4557367 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGGATG
4557393 C
1 C
4557394 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGGATG
Found at i:4558074 original size:903 final size:900
Alignment explanation
Indices: 4556330--4558512 Score: 3252
Period size: 903 Copynumber: 2.4 Consensus size: 900
4556320 CTGCCACCGA
* * * * *
4556330 TCAGGTTCCCCGATGATGCTCCGGTGATGGT-CCCTCGATAAAGAAAAATG-TGGCACCAGCACA
1 TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCC-CGATGAAGAAAAATGCT-GCACCAGCACA
* * * * *
4556393 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTC-GATCCGGTTCGATCTTAGATTGGGAATGAAC
64 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCT-CGGTCCGATCTTAGACTGGGAATAAAC
* * *
4556457 TCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAGACGAGCGTGCGGGC
128 TCCGGATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * * * * *
4556522 ATTCAACCGGCTAGAGGGGTGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTG
193 GCTC-AGCGACTAGAGGGGTGGGATGCGCAAGCCAGGGATCG-CCGGGTCCCCCTCTGCGTGCTG
* * * * * *
4556587 CCAATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGTATGAACTCCGTATGCCT
256 TCAATTCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCT
* * * * * * * *
4556652 AAGCCAATTGATGAAATGAGTGGGCGGGTGGACGGGCGGGCACTACGCCGGCTAGAGAGACGGGA
321 AAGCCAACTGATGAAACGAGCGGGCGAGCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * *
4556717 TGCGCAAGCCGTGGATCGATAGGGTTGTACGTGTGTTTAGGCACATCTTCATTTTTCTGCGTGCC
385 TCCGCAAGCCGTGGATCGATAGGGTTGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
4556782 AATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATG
450 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATG
* * * *
4556847 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAGCCTTTTGCTGTTCGGGATTTTTTAAA
515 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAA
* * * *
4556912 ATTTTTTTGGAAGGAGTTTTCCCCCAAAACTTGGTAGACATGATCCTTGCATTTTTTTTGGCATG
580 ATTTTTTCGAAAGGAGTTTTCCACCAAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATG
*
4556977 CACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
645 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
4557042 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTAAAGGGTG
710 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTAAAGGGGG
**
4557107 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
775 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
4557172 GTACATCATGTGCGCACAACCCCCCCGG-CCCCCCGATCGCCGGAACCCTAATGTCG-TCGG
840 GTACATCATGTGCGCACAACCCCCCCGGCCCCCCCGATCACCGAAACCCTAATGCCGCT-GG
**
4557232 TCAGGTTCTCCGGGGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACATG
1 TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACATG
4557297 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCTCGGTCCGATCTTAGACTGGGAATAAACTCC
66 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCTCGGTCCGATCTTAGACTGGGAATAAACTCC
*
4557362 GGATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGC
131 GGATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
4557427 TCAGCTGACTAGAGGGGCGGGATGCGCAAGCCAGGGATCAGCCGGGTTCCACTCTGTGTGCTGTC
195 TCAGC-GACTAGAGGGGTGGGATGCGCAAGCCAGGGATC-GCCGGGTCCCCCTCTGCGTGCTGTC
** * * *
4557492 AATTCTGCTGCCACAAAGCTCGGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAA
258 AATTCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAA
4557557 GCCAACTGATGAAACGAGCGGGCGAGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATC
323 GCCAACTGATGAAACGAGCGGGCGAGCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACGGGATC
**
4557622 CGCAAGCCGTGGATCGATA-GGTTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
387 CGCAAGCCGTGGATCGATAGGGTT-GTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
4557686 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
451 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATGG
* *
4557751 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAATA
516 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAA
** * *
4557816 TTTTTTCGAAAGGAGTTTTGGACC-AAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGC
581 TTTTTTCGAAAGGAGTTTTCCACCAAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATGC
*
4557880 ATAAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
646 A-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
4557945 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AAGGGG
710 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT-TTTAAAGGGG
4558009 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
774 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
4558074 CGTATATCATGTGCGCACAACCCCTCCGGCCCCCCCGATCACCGAAACCCTAATGCCGCTGG
839 CGTACATCATGTGCGCACAACCCCCCCGGCCCCCCCGATCACCGAAACCCTAATGCCGCTGG
* *
4558136 TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGGACCAGCACATG
1 TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACATG
* ** *
4558201 CCCGAGCCTAGCATGTGCTGCCGCAATGCTCGGCCCGGTCCGATCTTAGACTGGGAATAAACT-C
66 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCTCGGTCCGATCTTAGACTGGGAATAAACTCC
* *
4558265 GGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGGGCGGGCG
131 GG-ATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
4558330 CTCAGCCAGCCAGAGGGGTGAGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCTACGTGCTGT
194 CTCAGCGA-CTAGAGGGGTGGGATGCGCAAGCCAGGGATC-GCCGGGTCCCCCTCTGCGTGCTGT
* *
4558395 CGA-TCTTGCTGCCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCCT
257 CAATTC-TGCTGCCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCT
*
4558459 AAGCCAACTGATGAAACGAGCGGGCGAGCAGGCGAGCGGGCACTACGTCGGCCA
321 AAGCCAACTGATGAAACGAGCGGGCGAGCGGGCG-GCGGGCACTACGTCGGCCA
4558513 TTTGAAAGTT
Statistics
Matches: 1156, Mismatches: 110, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
902 166 0.14
903 622 0.54
904 367 0.32
905 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (900 bp):
TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCTCGGTCCGATCTTAGACTGGGAATAAACTCC
GGATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCGACTAGAGGGGTGGGATGCGCAAGCCAGGGATCGCCGGGTCCCCCTCTGCGTGCTGTCAAT
TCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
AACTGATGAAACGAGCGGGCGAGCGGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATCCGCA
AGCCGTGGATCGATAGGGTTGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTT
TCGAAAGGAGTTTTCCACCAAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATGCAAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTAAAGGGGGTGTGAG
TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
CATGTGCGCACAACCCCCCCGGCCCCCCCGATCACCGAAACCCTAATGCCGCTGG
Found at i:4558274 original size:26 final size:26
Alignment explanation
Indices: 4558245--4558297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4558235 CCGGTCCGAT
*
4558245 CTTAGACTGGGAATAAACTCGGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
4558271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
4558297 C
1 C
4558298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:4558992 original size:26 final size:26
Alignment explanation
Indices: 4558963--4559015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4558953 CTGGTCCGAT
4558963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4558989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4559015 C
1 C
4559016 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4559897 original size:26 final size:26
Alignment explanation
Indices: 4559861--4559913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4559851 CTAGTCCGAT
*
4559861 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4559887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4559913 C
1 C
4559914 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4560564 original size:26 final size:26
Alignment explanation
Indices: 4560535--4560585 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4560525 GGTCCAATCC
4560535 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
4560561 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
4560586 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:4561902 original size:866 final size:863
Alignment explanation
Indices: 4560091--4566789 Score: 6345
Period size: 866 Copynumber: 7.5 Consensus size: 863
4560081 ACTGCAGTTC
*
4560091 GGGATTTTTTAAAATTTTTTTGGAA-GAATGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
1 GGGATTTTTT-AAATTTTTTTGGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
4560155 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
64 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
4560220 TGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
129 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
4560285 TGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGAAGAGGAATAGGGGGCCAATATAAGGGCCAA
194 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
4560349 GTACCAGCACCTATCGTACATCATGTGCACACACCACCCCGGCCCCCCCGATCGTCGGAACCCCA
259 GTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG-CCCCCCGATCGTCGGAACCCCA
** * * * *
4560414 ATGCAACCGGTTAGGTTCTTCGATGATGCTCCGACGATGGTGCCCCGACAAAGAAAAA-AGTGAC
322 ATGCCGCCGGTCA-G------G-T--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATA-CGAC
* * *
4560478 ACCAGCACATGCCCGAGCCTAGCATGTGCTGGCGTAACCCTCGGTCCGGTCCAATCCTAGACTGG
375 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGG-----T--T---C---
*
4560543 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
422 ----G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * ** * * ** * * * * *
4560608 CGTACGGGTGCTCAGCTAGCCAGAGGGGCGAGACGTACAAGCTGGGGATTGGTCGGGTCCTCCTC
479 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTT
* * * * **
4560673 TGCATGCTGCCTATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTC
544 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * *
4560738 CGTATGCCTAAGCGAA-TCGACGAAACGAGCGGGTGGGTGTGTGGACGAGCACTACGCCGGCCAG
609 CGTATGCCTAAGCCAACT-GACGAAA-GAGCGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAG
*
4560802 AAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
672 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** * *
4560867 TCTATGCGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
737 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
4560932 AACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAAC-TTTTGCGGTTCA
802 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TAAAACTTTTTACGGTT-A
*
4560995 -GGATTTTTTAAAATTTTTTTGGAA-GAATGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
1 GGGATTTTTT-AAATTTTTTTGGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
4561058 TTTTTTTTGGCATGTACAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCATT
64 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
4561123 TGAAAAAGGTGTCCCCATTTCAGACACTTAAATGGCTACTGACAGCAAACCTGTAAAATCTCAAA
129 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
4561188 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAA
194 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
4561253 GTACCAGCACCCATAGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCTAAT
259 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * *
4561318 GCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCTGACAAAGAAAAATACGGCACCAGCACATGCCC
324 GCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
* * *
4561383 GAGCCCAGCATCTGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACTAGGAATGAACTCCGTA
389 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * ** * * *
4561448 AGGCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAA
454 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * *
4561513 GCCGGGGATCGACCGGGTCCCCCTTTACGTGCTGCCGATCCTTGCTACCGCAACCCTCGGTCCGG
519 GCCGGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCGATCC-TGCTGCCGCAACCCTCGGTCCGG
*
4561578 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCGAGCGGGTG
583 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA-GAGCGAGCGGGTG
* * * * * *
4561643 GGTGGGCGGGCACTAGGCCGGCCAGAAAGACGGGATGCGTAAGCCGTCGATCAATAGGGTGGTAG
647 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
4561708 GTGGGTTTAGGCACATCTTCATATTTCTACATTCCAATGCCATTTTTATGGCTTGGAAATTCATA
712 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
4561773 CAATGGTCCCTTAAGCCTTTACGTGAAGTTTGATGGCAAGACTACTCGTTTTCTATTTTTCACGA
777 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
4561838 TTTTTAAAACTTTTTACGGTTA
842 TTTTTAAAACTTTTTACGGTTA
* * * ** *
4561860 GGGATTTTTTAAATTTTTTTCGGAAGGATTTTTGGGCCCAAACTTTGTAGAAATGATCCATGTAT
1 GGGATTTTTTAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
4561925 TTTTGTTGGCCTGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
4561990 GAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
4562055 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAAGGGGCCAATATAAGAGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
4562120 TACCAGCACCCATCGTACATAATGTGCGCACA-----C--CCCTCCGATCGTCGGAACCCCAATG
260 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
* * * ** *
4562178 TCGCCGGTCAGGTTCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCG
325 CCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCG
** * * *
4562243 AGCCCAGCATGTGCTGCAACAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTAT
390 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
4562308 GCCTAAGTCAACCTATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAG
455 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
4562373 CTGGGGATCGACCGGGT-CCCCTTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTTCGGT
520 CCGGGGATCGGCCGGGTCCCCCTT-TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGT
*
4562437 CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA-A-CGA----GTGGG
584 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAGAGCGAGCGGGTGGG
* * * *
4562495 CGGGCGGGCACTATGCCGGCCAGAGAAACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
649 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * ** *
4562560 TGTTTTAGGCACACCGTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATA
714 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * **
4562625 ATGGTCCCTTTAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTCATAATT
779 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
4562690 TTCAAAACTTTTTATGGTTC
844 TTTAAAACTTTTTACGGTTA
* * * * * *
4562710 GGGA----TTAAACATTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTATTT
1 GGGATTTTTTAAA-TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
4562771 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
4562836 GAAAAAAGTGTACCCATTTCAGACATTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
4562901 GCTCTTTAAAGGGGTGTGAGTTTTCGAGGTTTGATGAAGGATATGGGGCCAATATAAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * **
4562966 TACTAGCACCCATCGCACATCATGTGCGCACGCCCCCTCCGGCCCACCCGATCACCGGAACCCCA
260 TACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC-CCGGCCC-CCCGATCGTCGGAACCCCA
* **
4563031 ATGCAGCCGGTCAGGTTCTCCGGCGATGCTCCGAATATAATGCCCCGACGAAGAAAAATGTGACA
322 ATGCCGCCGGTCAGGTTCTCCGGCGATG----G-------TGCCCCGACGAAGAAAAATACGACA
* * *
4563096 CCAGCACATGCCCGAGCCCAGCATGTGCTCCCACAACCCTTGATCCGATCCAATCTGAGACTGGA
376 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----T-CG-----GT-T----C----
* * * *
4563161 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATTCCCAAGTCAACCTATGAAACGAGC
422 ---G-A-TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * * *
4563226 TTGCGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGTATCAGTCGGGTCCCCCTCT
480 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTTT
* * * ***
4563291 GCGTGCTGCTGAGCCTGCTGCCACAACCCTCGGTCTACTCTGATCTTAGACTGGGAATGAACTCC
545 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
4563356 GTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGCC
610 GTATGCCTAAGCCAACTGACGAAA-G-A-------GCGAGCGGGTGGGCGGGCGGGCACTACGCC
** *
4563421 AACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
666 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
4563486 CATATTTCTGCCTACCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
731 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * * * *
4563551 CACGTCAAGTTTCATAGCAAGACGAGTCCTTTTCTATTTTTCAAGATTTTTGAAACATTTTACGG
796 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG
*
4563616 TTT
861 TTA
* * * * * *
4563619 TGGATTTTTTTAATTTTTTTGGAAGGATTTTTGGCCCGAAACTTGGTAGACGTGATCTTTGTGTT
1 GGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
** * *
4563684 TTTGTTGGCATGCACAAAAAAATTTTGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
4563749 AAAAAAGTGTCCCCATTTTAGACA-TTTCAATGGCTACTGGCAGCAAACATGTAAAATCTCAAAT
131 AAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* ** * * *
4563813 GCTCTTTAAGGGGGTGTGAATTCTTAAGGTTTGATGAGGGAAAGGGGGCGAATATAAGGGCCACG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
4563878 TACCAGCACCCATCGTAAATCATGTGCGCCCACCCCCCGGCCCCCTCGATCGCCGAAACCCCAAT
260 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAAT
* * *
4563943 GCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCAACGAAGAAAAACACGACACC
324 GCCGCCGGTCAGG-T-T----C--T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATACGACACC
* * * * * *
4564008 AGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCTTCGG-TCTGGTCTGATCTTAGGCTGGGA
378 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GATCCGATCTTAGACTGGGA
* * * *
4564072 ATGAACTCCGTATGCTTAGACTCGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCCGTA
442 ATGAACTCCGTATGCCTA-A----G--TCAAC-CC--ATG---AAAC---G-A-G--CGTGCG--
* * *** * * * * ** *
4564136 TGC-CTAAGTCAACCCATGAAACGAGCGTGCGGG-CGCTC-AGCTGGCCAGAGGGGCGGGATGTG
485 GGCGCTCAG-CCGGCCA-G--A-G-G-G-GCGGGATGCGCAAGCCGG--GGATCGGCCGG--GT-
* *** * * * * * * *
4564198 CAACCCGAGGATCGGTCGGGTCCCCCACTACATGCTGCCGATCCTGCTGCTGCAACCATCAGTTC
537 C-CCCCTTTG--C-GT--GCT-GCCGA-T-CCTG---------CTGC--C-GCAACCCTCGGTCC
* * *
4564263 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACG-AA-A-CGAGCGGGC
581 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAGAGCGAGCGGGT
* ** * *
4564325 GGGCAGG-AAGCACTACGCCAGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
646 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
4564389 GGTGGGTTTAGGCGTATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
711 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
4564454 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATG
776 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
4564519 ATTTTTGAAACTTTTTGCGATTC
841 ATTTTTAAAACTTTTTACGGTTA
* *
4564542 GGGATTTTTTAAAAATTTTTTGGAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTAT
1 GGGATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
4564607 TTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
4564672 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
4564737 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
4564802 TACCAGCACCCACCGCACATCATGCGCGCACACCCCCTGGCCCCTCCGATCGTCAGAACCCTAAT
260 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAAT
* * * * * *
4564867 GCCGTCAGTCAGGTTCTCCGGCGATGGTGCCCCGACGGAGAAAAATACGGCACTAGCACATGCTC
324 GCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
*
4564932 GAGCCCAGCATGTGCTGCCGTAACCCTCGTTCCGATCTGATCTTAGGTTGGGAATGAACTCTGTA
389 GAGCCCAGCATGTGCTGCCGCAACCCTCG----G---T--TC---------G-AT---C-C-G-A
* *
4564997 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTC-
429 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
4565061 GACCGGCCAGAGGGGAGGGATGCGCAAGCCGAGGATGGGCCGAGTCTCGCC---ACGT--AGCC-
493 G-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC-CCCCTTTGCGTGCTGCCG
* ** * *
4565120 AT--TGAAT-CCTAATACACCT---TCATGGTCTGATC-TATGACTGAGG-AT-AACTCTTGTAT
556 ATCCTG-CTGCCGCA-AC-CCTCGGTC-CGGTCTGATCTTA-GACTG-GGAATGAACTC-CGTAT
* * * * * ** * *
4565176 G-CTATGCCAACCGACG---GAACGAGCAGGCGGGCAAAATGCGGGCACTATGCACAG-CAGAGA
614 GCCTAAGCCAACTGACGAAAGAGCGAGCGGGTGGGC---GGGCGGGCACTACGC-CGGCCAGAGA
4565236 GA-GGGAT-CGC-AG-CGTTTGGATCGA-AGGGT-GTAGGTGGG-TTAGGCACAT-TT-ATATTT
675 GACGGGATGCGCAAGCCG--TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* **** * * *
4565292 ACTGCGTG-CAATTCCTAGAAATAT-GCTTGTAATTTCATACAACGGTCCCCTT-CG-C-TCACG
738 -CTGCGTGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACG
* * * *
4565352 TGAAGCTTTC-TGGCAAGACGACTCGTTTTCTATTTTTTAGCAATTTTGAACA-TTCTATCTAAG
800 TGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTTAAAACTT-T-T-T-A-
**
4565415 TCGGGTCC
858 -C-GGTTA
* * * *
4565423 GGGATTTTTAAAAATTTTATCGGAAGGGGTTTTGCCGATCCCC--ACTTGGTCAG-CGTGATCCT
1 GGGATTTTT-TAAATTTTTTTGGAAGGAGTTTTG--G--CCCCAAACTTGGT-AGACGTGATCCT
* ** *** * * *
4565485 TATATTTTTGTTGGCATGCATACGGAGTCAGTCAGTTAAAAA-TCGAAGTGTACATGATTTTGTG
60 TGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
4565549 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTCTATAAT
123 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
4565614 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAG
188 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
4565679 GGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGACCCCCAAGATCGTCGGA
253 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGA
* * * * *
4565744 ACCTCAATACCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAAAAAAAT
316 ACCCCAATGCCGCCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCGACGAAGAAAAAT
* * **
4565809 GCGACACCAGCACATGCCCGACCCCAGCATGTGCCACCGCAACCCTCAGTCCGGTCTGATCTTAG
370 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G---TT--
* *
4565874 ACTGGGAATGAACTCCGTATGCTTAGAGTGGGAATGAAATCCGTATGCCTAAGTCAACCCATGAA
421 -C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * ** * * *
4565939 ACGAGCGTGCGGGCACTCAACTGGCCAGAGGGGCGGGATGCATAAGTCAGGGATCGGCCGAGTCC
474 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * ** ** * *
4566004 TCCTTTGCATGCTGCCGATCCTGCTATCGCAACCCTCGGTCTAGTTTGATCTTAGACTAGGAATG
539 CCCTTTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* *
4566069 AACTCCGTATGCCTAAGCCAACCGATG-AA-A-CGAGC----GGGCGGGCGGGCACTACGCCGGC
604 AACTCCGTATGCCTAAGCCAACTGACGAAAGAGCGAGCGGGTGGGCGGGCGGGCACTACGCCGGC
* * * *
4566127 CAGAGAGACGGGATGCGCAACCCGTGGATCCAT-GGGTGGTGGGTGAGTTTAGGCACATCTTCAT
669 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
4566191 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGAC
734 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * **
4566256 ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTC
799 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTT-
4566321 A
863 A
* * * * *
4566322 -GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCGCAAACTTGGTAGACATAATCCTTGTAT
1 GGGATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
4566386 TTTTTTTGGCCTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
4566451 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
4566516 GCTTTTTATGGGGGTGTGGGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
4566581 TACCATCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCG-CAGGAACCCCAA
260 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTC-GGAACCCCAA
* * *
4566645 TGCCACCGGTCCGGTTCTTCGGCGATTCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGACAC
323 TG---CC-G-CCGG----TCAG-G-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACAC
* * *
4566710 CAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGA
377 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGA
* * *
4566775 GTGAATTCCATATGC
442 ATGAACTCCGTATGC
4566790 TTAGACTGGG
Statistics
Matches: 4834, Mismatches: 669, Indels: 620
0.79 0.11 0.10
Matches are distributed among these distances:
846 248 0.05
847 5 0.00
850 194 0.04
853 1 0.00
854 3 0.00
855 4 0.00
856 41 0.01
857 2 0.00
858 72 0.01
859 221 0.05
860 1 0.00
861 1 0.00
865 124 0.03
866 518 0.11
867 68 0.01
868 24 0.00
869 3 0.00
870 4 0.00
871 2 0.00
872 3 0.00
874 39 0.01
875 13 0.00
876 35 0.01
877 19 0.00
878 9 0.00
879 46 0.01
880 29 0.01
881 48 0.01
882 11 0.00
883 50 0.01
884 214 0.04
885 59 0.01
886 6 0.00
887 1 0.00
888 4 0.00
889 4 0.00
890 3 0.00
891 69 0.01
892 8 0.00
893 174 0.04
894 115 0.02
895 186 0.04
896 187 0.04
897 31 0.01
898 43 0.01
899 19 0.00
900 22 0.00
901 28 0.01
902 59 0.01
903 262 0.05
904 130 0.03
905 52 0.01
906 2 0.00
908 4 0.00
909 196 0.04
910 96 0.02
911 23 0.00
912 255 0.05
913 74 0.02
914 4 0.00
915 3 0.00
916 6 0.00
917 3 0.00
918 10 0.00
919 6 0.00
920 3 0.00
921 10 0.00
922 4 0.00
923 202 0.04
924 305 0.06
925 4 0.00
926 3 0.00
929 3 0.00
931 3 0.00
932 6 0.00
933 4 0.00
934 1 0.00
935 4 0.00
936 55 0.01
937 1 0.00
938 3 0.00
939 27 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (863 bp):
GGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAGAGCGAGCGGGTGGGCG
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TAAAACTTTTTACGGTTA
Found at i:4563391 original size:4 final size:4
Alignment explanation
Indices: 4563384--4563412 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
4563374 ACGAAACGAA
4563384 CGGG CGGG CGGG CGGG CGGG CGGG CGGG C
1 CGGG CGGG CGGG CGGG CGGG CGGG CGGG C
4563413 ACTACGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.28, G:0.72, T:0.00
Consensus pattern (4 bp):
CGGG
Found at i:4564098 original size:26 final size:26
Alignment explanation
Indices: 4564060--4564138 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
4564050 CTGGTCTGAT
*
4564060 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4564086 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
4564112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4564138 C
1 C
4564139 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4564785 original size:924 final size:902
Alignment explanation
Indices: 4562283--4566839 Score: 5103
Period size: 924 Copynumber: 5.1 Consensus size: 902
4562273 CCGGTCAGAT
* *
4562283 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
4562348 CGGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCTTCTGCATGCTACCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCC
* *
4562413 TGCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
4562478 CTGACGAAACGAGTGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGAGATGCGCAAGCCATGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * **
4562543 TCGATAGGGTGGTAGGTTGTTTTAGGCACACCGTCATATTTCTATGTGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
4562608 GCTTGTAAATTCATATAATGGTCCCTTTAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** ** * * *
4562673 TTTTATTTTTCATAATTTTCAAAACTTTTTATGGTTCGGGA----TTAAACATTTTTCGGTAGGA
391 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGA
* *
4562734 GTTTTGGCCCCAAACTTGGTAGACGTGATCCCTAT-TTTTTTGTTGGCATGCACAAAAAAATTCA
456 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCA
* * *
4562798 GCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACATT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
4562863 TTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTTTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
4562928 GGTTTGATGAAGGATATGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
4562993 GCACGCCCCCTCCGGCCCACC-CGATCACCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGGCGA
715 GCAC-ACCCC-CCGGCCC-CCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
*** ** *
4563057 TGCTCCGAATATAATGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
777 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
4563122 GCTCCCACAA-CC-CT-TGATCC---GA-TCCAATCTGAGACTGGAAATGAACTCCATATG
842 GCTGCCGCAACCCTCTCTGATCCGGTGACTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
4563176 CTTAGACTGGGAATGAACTCCGTATTCCCAAGTCAACCTATGAAACGAGCTTGCGAGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
4563240 TCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGTATCAGTCGGGTCCCCCTCTGCGTGCTGCTGAG
66 T-GGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGGCCGGGTCCCCCTCTGCATGCTGCCGAT
** *
4563304 CCTGCTGCCACAACCCTCGGTCTAC--TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
129 CCTGCTGCTGCAACCCTCAGT-T-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
4563367 CCAACTGACGAAACGAACGGGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGCCAACCAGAGAGA
192 CCAACCGACGAAACG-A---------------GCGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
*
4563432 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
241 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * *
4563497 CTACCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTT
306 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * * **
4563562 TCATAGCAAGACGAGTCCTTTTCTATTTTTCAAGATTTTTGAAACATTTTACGGTTTTGGATTTT
371 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * * * * *
4563627 TT-TAATTTTTTTGGAAGGATTTTTGGCCCGAAACTTGGTAGACGTGATCTTTGTGTTTTTGTTG
436 TTAAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
** * *
4563691 GCATGCACAAAAAAATTTTGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
501 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
4563756 TGTCCCCATTTTAGACA-TTTCAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTT
566 TGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* ** * * * *
4563820 AAGGGGGTGTGAATTCTTAAGGTTTGATGAGGGAAAGGGGGCGAATATAAGGGCCACGTACCAGC
630 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
4563885 ACCCATCGTAAATCATGTGCGCCCACCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGTCG
695 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCG
* * **
4563950 GTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCAACGAAGAAAAACACGACACCAGCACAT
760 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACAT
* *
4564015 GCCCGAGCCTAGCATGTGCTGCTGCAACCTTCGGTCTGGTCTGATCTTAGGCTGGGAATGAACTC
825 GCCCGAGCCCAGCATGTGCTGCCGCAACC--C--TC---TCTGATC-----C--GG--TG-ACTC
*
4564080 CGTATGCTTAGACTCGGAATGAACTCCATATG
873 CG-AT-CTTAGACTGGGAATGAACTCCATATG
4564112 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
4564177 TGGCCAGAGGGGCGGGATGTGCAACCCGAGGATCGGTCGGGTCCCCCACTACATGCTGCCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCC
* *
4564242 TGCTGCTGCAACCATCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4564307 CGGACGAAACGAGCGGGCGGGCAGGAAGCACTACGCCAGCCATAGAGACGGGATGCGCAAGCCGT
196 CCGACGAAACGAGCGGGCGGGC-GG--GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGT
** *
4564372 GGATCGATAGGGTGGTAGGTGGGTTTAGGCGTATCTTCATATTTCTGTGTGCCAATGCCATTTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
*
4564437 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
4564502 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAAATTTTTTGGAA
388 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAA
*
4564567 GGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
4564632 GAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
4564697 CTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
4564762 GAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGC
648 GAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
4564827 GCGCACACCCCCTGG-CCCCTCCGATCGTCAGAACCCTAAT---GCC-GTCA-G---T-C-A-GG
713 GCGCACACCCCCCGGCCCCCT-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * * *
4564880 TTCTCCGGCGATGGTGCCCCGACGGAGAAAAATACGGCACTAGCACATGCTCGAGCCCAGCATGT
777 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * * ** **
4564945 GCTGCCGTAA-CC-CTC-GTTCC---GA-TCTGATCTTAGGTTGGGAATGAACTCTGTATG
842 GCTGCCGCAACCCTCTCTGATCCGGTGACTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
4564999 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
* * * * * *
4565063 CCGGCCAGAGGGGAGGGATGCGCAAGCCGAGGATGGGCCGAGTCTCGCCACGTAGCCAT--TG--
65 CTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTC-CCCCTC-T-G-CATGCTGCC
* ** * * *
4565124 AAT-C--CTAATAC-ACCTTCA--T-GGTCTGATC-TATGACTGAGG-AT-AACTCTTGTATG-C
126 GATCCTGCTGCTGCAACCCTCAGTTCGGTCTGATCTTA-GACTG-GGAATGAACTC-CGTATGCC
* * * *
4565178 TATGCCAACCGACGGAACGAGCAGGCGGGCAAAATGCGGGCACTATGCACAG-CAGAGAGA-GGG
188 TAAGCCAACCGACGAAACGAGCGGGC-GG------GCGGGCACTACGC-CAGCCAGAGAGACGGG
4565241 AT-CGC-AG-CGTTTGGATCGA-AGGGT-GTAGGTGGG-TTAGGCACAT-TT-ATATTTACTGCG
245 ATGCGCAAGCCG--TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGCG
* **** * * *
4565298 TG-CAATTCCTAGAAATAT-GCTTGTAATTTCATACAACGGTCCCCTT-CG-C-TCACGTGAAGC
307 TGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAG-
* *
4565358 TTTC-TGGCAAGACGACTCGTTTTCTATTTTTTA-GCAATTTTG-AACATTCTATCTAAGTCGGG
369 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG-ATTTTTGAAAC-TT-T-T-T--G-C-GG
* * *
4565420 TCCGGGA-TTTTTAAAAATTTTATCGGAAGGGGTTTTGCCGATCCCC--ACTTGGTCAG-CGTGA
425 TTCGGGATTTTTTAAAAATTTT-TTGGAAGGAGTTTTG--G--CCCCAAACTTGGT-AGACGTGA
* * ** *** * * *
4565481 TCCTTATATTTTTGTTGGCATGCATACGGAGTCAGTCAGTTAAAAA-TCGAAGTGTACATGATTT
484 TCCTTGTATTTTTTTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
4565545 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTCTA
547 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
4565610 TAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATA
612 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATA
* * ** *
4565675 TAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGACCCCCAAGATCGT
677 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATCGC
* * * * * *
4565740 CGGAACCTCAATACCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAAAA
741 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* ** *
4565805 AAATGCGACACCAGCACATGCCCGACCCCAGCATGTGCCACCGCAA-CC-CTCAG-TCCGGT--C
806 AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTCTGATCCGGTGAC
*
4565865 T--GATCTTAGACTGGGAATGAACTCCGTATG
871 TCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
4565895 CTTAGAGTGGGAATGAAATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
4565960 TGGCCAGAGGGGCGGGATGCATAAGTC-AGGGATCGGCCGAGTCCTCCTTTGCATGCTGCCGATC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATC
* * * * *
4566024 CTGCT-ATCGCAACCCTC-GGTCTAGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
130 CTGCTGCT-GCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
4566087 CAACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAACCCGT
193 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
4566152 GGATCCAT-GGGTGGTGGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
4566216 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACATGAAGTTTCATGGCAAGACGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * *
4566281 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTT-AAAATTTTTTCGGA
388 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTT-GGA
* * * * *
4566345 AGGAGTTTTGACCGCAAACTTGGTAGACATAATCCTTGTATTTTTTTTGGCCTGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
4566410 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
4566475 ACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTATGGGGGTGTGGGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
4566540 CGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATG
647 CGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
4566605 TGCGCACACCCCCCGGCCCCCTCGATCGCAGGAACCCCAATGCCACCGGTCCGGTTCTTCGGCGA
712 TGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * *
4566670 TTCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGT
777 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * * *
4566735 GCTGCCACAA-CC-CTC-GGTCC---GA-TCCGATCTTAGACTGGGAGTGAATTCCATATG
842 GCTGCCGCAACCCTCTCTGATCCGGTGACTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
4566789 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
4566840 GGTGGGCGGG
Statistics
Matches: 3097, Mismatches: 399, Indels: 335
0.81 0.10 0.09
Matches are distributed among these distances:
873 4 0.00
874 45 0.01
875 6 0.00
876 34 0.01
877 18 0.01
878 8 0.00
879 42 0.01
880 44 0.01
881 34 0.01
882 5 0.00
883 55 0.02
884 190 0.06
885 40 0.01
886 8 0.00
887 120 0.04
888 10 0.00
889 9 0.00
890 2 0.00
891 4 0.00
892 6 0.00
893 182 0.06
894 212 0.07
895 185 0.06
896 224 0.07
897 23 0.01
898 36 0.01
899 22 0.01
900 14 0.00
901 13 0.00
902 20 0.01
903 57 0.02
904 38 0.01
905 42 0.01
906 4 0.00
907 1 0.00
909 193 0.06
910 107 0.03
911 8 0.00
912 237 0.08
913 73 0.02
914 1 0.00
915 1 0.00
916 2 0.00
919 2 0.00
920 19 0.01
921 4 0.00
923 203 0.07
924 272 0.09
925 4 0.00
932 1 0.00
933 1 0.00
934 4 0.00
935 4 0.00
936 201 0.06
937 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
TGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCC
TGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCTCTGATCCGGTGACTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:4565898 original size:26 final size:26
Alignment explanation
Indices: 4565869--4565921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4565859 CCGGTCTGAT
*
4565869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
4565895 CTTAGAGTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
4565921 C
1 C
4565922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:4568406 original size:26 final size:26
Alignment explanation
Indices: 4568377--4568427 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4568367 GGTCCGATCT
* *
4568377 TAGACTGGGAATGAACTCGATATGCG
1 TAGACTGGAAATGAACTCCATATGCG
4568403 TAGACTGGAAATGAACTCCATATGC
1 TAGACTGGAAATGAACTCCATATGC
4568428 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCG
Found at i:4572721 original size:26 final size:26
Alignment explanation
Indices: 4572692--4572747 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
4572682 CTGATCCAAT
*
4572692 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
4572718 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4572744 CTTA
1 CTTA
4572748 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4572846 original size:867 final size:879
Alignment explanation
Indices: 4570983--4577269 Score: 5990
Period size: 901 Copynumber: 7.1 Consensus size: 879
4570973 CCGGTCCGAT
* * * * *
4570983 CTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
4571048 CGGCTAGAGCGACGGGATGCGTAAACCGAGGATCGACCGGGTCCCCCT-C-TACGTGCTGTCGAA
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTA--TACTGTCGAT
* * * * *
4571111 CCTGCTACCGCAACCCTTGA-TCTGATTCGATCTTAGGCTGGGAATGAACTTCGTATGCCTAAGC
128 CCTGCT-GCGCAACCCTCGATTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
4571175 CAACCGACGAAACGAGCGGGCGGATGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCG
191 CAACCGACGAAACGA----GCGG--GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
4571240 CAAGCCGTGGATCGATA-----G--GGTGGGTTTAGGCACATCTTTATATTTCTACTTG-CCAAT
250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGTCCAAT
* * * *
4571297 GCCATTTTTCTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGAA
314 GCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCA
* ** * *
4571362 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGAGTTTTTAAAATT
377 AGACGAATCGTTTTCTATTTTTCATGA--TTTGAAACTTTTTGCGGTTC--GAGATTTTAAAATT
* * *
4571427 TTTTCAGAAGGAGGTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
438 TTTTCGGAAGGAGTTTTGGCCCCAAACTAT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* * * *
4571491 CAAAAACATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
502 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG--TTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * *
4571556 ATTTCGGACACTTAAATGGCTACGGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
565 ATCTCAGACACTTTAATGG--ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
4571621 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCGCCCATCG
628 GTGAGTTCTCGAGGTTTGATGAGGG--AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
4571686 CACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCGGAAACCCAATGCCG-CTGGTCAAGT
691 CACATCAT-T-TGCGC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGT
* * * * ** *
4571750 TCTCCGGCGATGCTCCGACGATGGT-CCTCGACGAAGAAAAATGCGGCACTAGCACATGCCCGAG
752 TCTCTGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * *
4571814 CCCAGCATGTCCTACCATAACCCTCAGTCCGGTTCAATCTTAGAC-TAGAAGTGCACTCCATATG
817 CCCAGCATGTGCTGCCACAACCCT-GGTCCGGTCCGATCTTAGACTTGGAA-TGAACTCCATATG
* * *
4571878 C-----CT----A--AA-T-CG-A--CC-----C-A--CA-AAACGAGCGTGCAGGTGCTCAGCT
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
4571918 GGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGACCAGGTCCCCTCTGCG--TACTGTTGATCC
66 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCC-CTCCGTATACTGTCGATCC
*
4571981 TGCTGCGCAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
130 TGCTGCGCAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
4572046 CGACG-AACGAGC-GGGGCGGGTGGGCACTAAGTCGGCGCAGAGA-ACGGGAATGCCGCAAGTCG
195 CGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGG-ATG-CGCAAGCCG
* * * *
4572108 TGGAACGATAGGGTGGTAGGT-GGTTTAGGTACATCTTCTTATTTCT-ATGTGCAAT-CGC-TTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCATGTCCAATGC-CATTT
*
4572169 TTATGGCTTGTAAA-CATACAATGGTCCCCCCTTAAGCC-CATGTGAAG-TTC-T-GC-AGACGA
321 TTATGGCTTGTAAATCATACAATGGT---CCCTTAAGCCTCACGTGAAGTTTCATGGCAAGACGA
* * *
4572228 ATCGATTTCCT-TTTTTCAATGA-TTGAAACTTTTT-CAGTTCGGGGA-TTT-AAA-TTTTTCGG
383 ATCG-TTTTCTATTTTTC-ATGATTTGAAACTTTTTGCGGTTC-GAGATTTTAAAATTTTTTCGG
* *
4572287 AAGGA-TTTT-GCCCCAGAAATATCGTAGACAATGATCCTTG-A-TTTTG-TGGCAATGGCATAA
445 AAGGAGTTTTGGCCCCA-AACTAT-GTAGAC-ATGATCCTTGTATTTTTGTTGGC-AT-GCACAA
* * *
4572347 AAGACATTC-GCT-AAAACTCGAAGTG-AGAAG-TTGGGACCATTTTGAAAAAAAAGTGTCCCCA
505 AA-AAATTCAGCTAAAAACTCGAAGTGTACAAGTTTGTGACCA-TTTG--AAAAAAGTGTCCCCA
* ** *
4572408 TCT-AAACACTTT-ATGG-CTGG-AAAAAACCTGTAAAAATCTCAACTGCTCTTTAAGGGGGTTG
566 TCTCAGACACTTTAATGGACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGG-TG
* * *
4572469 TGAGTTTTCGCA-G-TTGATTA-GG-GGGGGCCAA-ATTAAGGGCCATAGTA-CAG-ACCCCGTC
629 TGAGTTCTCG-AGGTTTGATGAGGGAGGGGGCCAATA-TAAGGGCCA-AGTACCAGCA-CCCATC
*
4572527 GCACATCATTTGTTG-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
690 GCACATCATTTG-CGCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
4572591 TCTAGTGATGCACCGAAGATGGTGCCTCGGTGAAGAAAAATACGGAACCAGCACTTGCCCGAGCC
754 TCTGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
4572656 TATCATGTGCTGCCGCAACCCGTGGTCTGATCCAATCTTAGACTTGGAATGAACTCCATATG
819 CAGCATGTGCTGCCACAACCC-TGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATATG
* * *
4572718 CTTAGACTGGGAATTAACTCCGTATGCTTAAGTCAACCCACAAACCAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAA-CGAGCGTGCGGGCGCTCAGC
* *** * * * * *
4572783 CGGCCAGAGGGGCGGGATGCGCAAGCTACGGATCGGCCGGGTACCCTTCCGTATACTGTTGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTATACTGTCGATCC
* * * * * * *
4572848 TACTATCGCAACCCTTGATTCGG-TCGGATCATAGACTAGGAATGAACTCCGTATGCTTAAGCAA
130 TGCT-GCGCAACCCTCGATTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
4572912 ACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
193 ACCGACGAAACGA----GCGG--GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
4572977 AGGCGTGGATTGATAGGATGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACAT-TCCAATGC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGTCCAATGC
**
4573041 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGGAG
316 CATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAG
* * * * *
4573106 ACGACTTGTTTTCTATTTTTCATGATTTTCAAAACATTTTGCGGTTTGAGATTTTTAAAAATTTT
379 ACGAATCGTTTTCTATTTTTCATGA-TTT-GAAACTTTTTGCGGTTCGAGA-TTTT-AAAATTTT
* * * *
4573171 TTCGGAAGGAGTTTTGGTCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTATAGGCATGCACA
440 TTCGGAAGGAGTTTTGGCCCCAAACTAT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * *
4573235 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTTCGACCATTTGAAAAAAATGTCCCCAT
504 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAG-TTTGT-GACCATTTGAAAAAAGTGTCCCCAT
*
4573300 -TCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATTG-TCTTTAAGGGGGT
567 CT-CAGACACTTTAATGG--ACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGT
4573363 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
628 GTGAGTTCTCGAGGTTTGATGAGGG--AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
4573428 TACATCATGTGCGCACACCCCCCTCTCGGCCCCCCCGTTCGCCGAAACCCCAATGCCGCCGGTCA
691 CACATCATTTGCG-----CCCCC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* * * ** * * *
4573493 AGTTCT-TCGGAGATGCTTCGGCGATGGTGCCCCGGGGAAGAAAAATCCAGCACCAGCACATGCC
749 GGTTCTCT-GGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCC
* * * * **
4573557 CGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGT
813 CGAGCCCAGCATGTGCTGCCACAACCC-TGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCAT
4573622 ATG
877 ATG
*
4573625 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * * * *
4573690 CGGCCAGAGAGGCATGATGGGGAAGTCGAGGACCGGCCGGGTCCCCCTCTGCATGCTGCCGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTATACTGTCGATCC
* * * *
4573755 TGCTACTGCAACCGTCG-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGC-GCAACCCTCGATTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * **
4573819 ACCGACGAAACGAACGTCCGGGCGGGCGGGCACTACGCCAGCCAGAGAGATAGGATGCGCAAGCC
193 ACCGACGAAACGAGCG--GGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
4573884 GTGGATCGATAGGGTGGTAAGTGGGGTTAGGCACATCTTCATATTTCTGCATG-CCAATGCCATT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGTCCAATGCCATT
4573948 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-A
320 TTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAGACGA
* * * ** *
4574012 ACCCGTTTTCTATGTTCCACAATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTATAATTTTTT
383 A-TCGTTTTCTATTTTTCATGA--TTTGAAACTTTTTGCGGTTCGA-GA--TTTTAAAATTTTTT
* ** **
4574076 TGCTAGGAGTTTTGGCCCCAAACTAT-TAGATTTGATCCTTGTATTTTTGTTGGCATGCACAAAA
442 CGGAAGGAGTTTTGGCCCCAAACTATGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4574140 AAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
507 AAATTCAGCTAAAAACTCGAAGTGTACAAG--TTTGTGACCATTTGAAAAAAGTGTCCCCATCTC
*
4574205 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
570 AGACACTTTAATGG--ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
4574270 TTCTCAAGGTTTGATGAGGGATAGGGGGATAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
633 TTCTCGAGGTTTGATGAGGG--AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * * * **
4574335 CATGTATGCACACCCCCCGGCCCCTCTGATCACCGTAAGCCAAATGCCACCGGTCAGGTTCTCTG
696 CAT-T-TGCGC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
* * * *
4574400 GCGATGCTCC-AACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAG
758 GTGATGCTCCGAA-GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
4574464 CATGTGCTGTCACAA------ACC-G--CGA---T---C-T---A-G---TCC-GAT-
822 CATGTGCTGCCACAACCCTGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATATG
*
4574497 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCA-CAAACGAGCGTGCGGGCGCTCAGC
* * * *** *
4574562 CGGCCAGAGGGGCAGGATACGCAAGCCGGGGTTTGGTTAGGTCCCCCTCTACGTGCTAC---CGA
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTC--CGT-ATACTGTCGA
* * * *
4574624 TCCTGCTGC-CATAACCCTC-AGTTTGATCCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAA
127 TCCTGCTGCGC--AACCCTCGA-TTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
4574687 GCCAACCGACGAAATGAGCAGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
189 GCCAACCGACGAAA--CG-A-GCGG--GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
4574752 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG-CCA
248 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGTCCA
* * *
4574816 ATACCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGG
312 ATGCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGG
* * *
4574881 CTAGAC-AACTCGTTTTGTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAA
375 CAAGACGAA-TCGTTTTCTATTTTTCATGA-TTT-GAAACTTTTTGCGGTTCGAGA--TTTTAAA
*
4574945 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTAT-TAGACATGATCCTTGTATTTTTGTTGGCATG
435 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTATGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * * *
4575009 CATAAAAAAATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCC
500 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG--TTTGTGACCATTTGAAAAAAGTGTCC
* *
4575074 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
563 CCATCTCAGACACTTTAATGG--ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * **
4575139 ATGTGAGTTCACGAGGTTTGATGAAGGATAGGGGGGGAATATAAGGGCCAAGTACCAGCACCCAT
626 GTGTGAGTTCTCGAGGTTTGATG-AGG-GAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
4575204 CGCACATCCTATGCGCACACCCCTCTGGGCCCCCCGATCGTAGGAACCCCAATGTCGTCGGTCAG
689 CGCACATCATTTGCGC-C-CCCC-C-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * ** * *
4575269 GTTCTCCGATGATGCTCTGGCGATAGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCG
750 GTTCTCTGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
4575334 AGCCTAGCATGTGCTGCCACAGCCCTCGGTCCAGACCGATCTTAGACTGGGAATGAACTCCGTAT
815 AGCCCAGCATGTGCTGCCACAACCCT-GGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATAT
*
4575399 C
879 G
* * * * * * ** * * *
4575400 CTTTGACTGGGAATAAACTCCGTATTCTTAAGCCAACCCATGAAACGAGCAAGCGGGCACTGAGT
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCA-CAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
4575465 CGGCCAGAGGGG-TGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTATACTGTCGATCC
* * * * * * *
4575528 TGCTACTGCAACCCTC-AATCTGGTTTGATCTTAGAATGGGAATGAAATCCATAAGCCTAAGCCA
130 TGCTGC-GCAACCCTCGATTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
4575592 ACCGACGAAACGAGCGAGCGGGTGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
193 ACCGACG-AA--A-CGAGC-GG-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
4575657 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATG-CCAATGC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGTCCAATGC
* * *
4575721 CATTTTTTTGGCTTGTAAATTCATACACTGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAG
316 CATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAG
* * *
4575786 ACGACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTT-CTGGTTCGAGATTTTTTAAAATTT
379 ACGAATCGTTTTCTATTTTTCATGA--TTTGAAACTTTTTGC-GGTTCGAGA--TTTTAAAATTT
* *
4575850 TTTCGG-AGGAGTTTTGGCCCTAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
439 TTTCGGAAGGAGTTTTGGCCCCAAACTAT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
4575913 AAAAACATGCAGCTAAAAACTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
503 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG--TTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
4575978 TTTCGGACACTTTAATGCCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
566 TCTCAGACACTTTAATG--GACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
4576043 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCC
629 TGAGTTCTCGAGGTTTGATGAGGG--AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
4576108 ACATCATGTGTGCACACCCCCCGG--CCCCCGATCGTCGAAACCCCAATGCCG-CTGGTCAGGTT
692 ACATCAT-T-TGCGC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTT
* * ** *
4576170 CTCCT-GTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACTAGCACATGCCCGAG
753 CT-CTGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
4576234 CTCAGCATGTGCTACCATAACCCTCGGTCCGGTCCGATCTTAGACTAGGAGTGAACTCCATATG
817 CCCAGCATGTGCTGCCACAACCCT-GGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATATG
* *
4576298 C-----CT----A--AA-T-CG-A--CC-----C-A--CA-AAA-GAAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAACG-AGCGTGCGGGCGCTCAGC
* * * * *
4576337 TGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATTGACCAAGTCCCCCT-C-TACGTACTATCGAT
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTA--TACTGTCGAT
* * * *
4576400 CATGCTGCCGTAACCTTCGATTCGG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
128 CCTGCTG-CGCAACCCTCGATTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
4576464 CAACCGACGAAACGAGC--GGGCAGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGT
191 CAACCGACGAAACGAGCGGGGGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
4576527 CGTGAAACGATAGGGTGGTAGCTGGGTTTAGGTACATCTTCTTATTTCT-ATGTGCCAATGCCAT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCATGT-CCAATGCCAT
*
4576591 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACG
319 TTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAGACG
* * * **
4576656 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTTAAGATTTTTTAAAATTTTTTC
382 AATCGTTTTCTATTTTTCATGA--TTTGAAACTTTTTGCGGTTCGAGA--TTTTAAAATTTTTTC
* * *
4576721 GAAAGGATTTTTGGCCCCAGA-TATTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
443 GGAAGGAGTTTTGGCCCCAAACTA-TGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
4576785 AAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTTGGACCATTTGAAAAAAGTGTCCCCAT-TC
507 AAATTCAGCTAAAAACTCGAAGTGTACAAG-TTTGT-GACCATTTGAAAAAAGTGTCCCCATCT-
*
4576848 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
569 CAGACACTTTAATGG--ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4576913 GTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACA
632 GTTCTCGAGGTTTGATGA-GG-GAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
4576978 TCATTTGCGCACGCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCTTTCAGGTTCTC
695 TCATTT--G--CGCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
4577043 CGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAACACTTGCCCGAGCCCA
756 TGGTGATGCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
4577108 GCATGTGCTGTCGCAACCCGCGGTCCGGTCCGATCTTAGACTTGGAATGAACTACATATG
821 GCATGTGCTGCCACAACCC-TGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCATATG
* * * * *
4577168 CATAGACTGGGAATTAACTCCGTATGCGTAATTCAACCCACGAAATGAGCGTGCGGGTGCTCAAG
1 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCGGGCGCTC-AG
* * * * *
4577233 CCGACCAGAGAGACAGGATGTGCAAGCCGTGGATCGA
64 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
4577270 TAGGGTGGTT
Statistics
Matches: 4514, Mismatches: 589, Indels: 576
0.79 0.10 0.10
Matches are distributed among these distances:
839 62 0.01
840 82 0.02
841 7 0.00
842 34 0.01
843 4 0.00
845 12 0.00
846 34 0.01
847 12 0.00
848 9 0.00
849 8 0.00
850 6 0.00
851 33 0.01
852 25 0.01
853 32 0.01
854 19 0.00
855 3 0.00
856 4 0.00
857 5 0.00
858 12 0.00
859 24 0.01
860 24 0.01
861 27 0.01
862 4 0.00
863 13 0.00
864 9 0.00
865 29 0.01
866 88 0.02
867 470 0.10
868 146 0.03
869 66 0.01
870 148 0.03
871 6 0.00
872 193 0.04
873 22 0.00
874 119 0.03
875 49 0.01
876 494 0.11
877 125 0.03
878 9 0.00
879 17 0.00
880 1 0.00
881 13 0.00
882 18 0.00
883 5 0.00
884 17 0.00
885 8 0.00
886 6 0.00
887 5 0.00
888 19 0.00
889 32 0.01
890 30 0.01
891 30 0.01
892 9 0.00
893 13 0.00
894 8 0.00
895 13 0.00
896 46 0.01
897 47 0.01
898 244 0.05
899 12 0.00
900 66 0.01
901 512 0.11
902 241 0.05
903 301 0.07
904 14 0.00
905 4 0.00
906 5 0.00
907 306 0.07
908 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (879 bp):
CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCCGTATACTGTCGATCCT
GCTGCGCAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCATGTCCAATGCCATTTTTATG
GCTTGTAAATCATACAATGGTCCCTTAAGCCTCACGTGAAGTTTCATGGCAAGACGAATCGTTTT
CTATTTTTCATGATTTGAAACTTTTTGCGGTTCGAGATTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTATGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTTAATGGAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCCCCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGAAGATGGTGCCC
CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTGGTCC
GGTCCGATCTTAGACTTGGAATGAACTCCATATG
Found at i:4573628 original size:26 final size:26
Alignment explanation
Indices: 4573599--4573651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4573589 CCGGTCTGAT
*
4573599 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4573625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4573651 C
1 C
4573652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4580517 original size:881 final size:876
Alignment explanation
Indices: 4578443--4581847 Score: 4350
Period size: 903 Copynumber: 3.9 Consensus size: 876
4578433 CGGTCTGGTC
* * *
4578443 CGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
4578508 ACCCACGAAACGAGCGTGCAGGCGCTCTA-CCAGCCAGAGGGGTGGGATGCGCAAGCC-AGGGAT
66 ACCCACGAAACGAGCGTGCAGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGAT
* ** * * * *
4578571 CGACCGGGTCCCCCTCTACATGCTGCCCATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
129 CGATCGGGTCCCCCTCTGGA-GCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTA
* * * *
4578636 GACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGGAACGAGCGGGCGGTGGTGGGCGGGCA
193 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA--CAAC-AACGAGC------GGGCGGGCA
* * *
4578701 CTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGT-GTAGGTGGGTTTAGGC
249 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
4578765 ACATCTTCATATTTCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCCT
314 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
4578830 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
379 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTT
* * *
4578895 TTTACGGTTCGGGATTTGTTAAAATTTTTTCGGAAG-GCGTTTTAGCCCCAAACTTGGTAGACGT
444 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGCG-GTTTTGGCCCCAAACTTGGTAGACGT
* *
4578959 GATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
508 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
** * * *
4579024 TGTGACCATTTGAAAAAACTGTCCCCATTTTAGCCACTTTAAGGGCTACTGGCAGCAAACCTGTA
573 TGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
4579089 AAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
638 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
4579154 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCTCCCCCGATCGCC
703 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATC-TC
* ** * *
4579219 GGAACCCCATTGCCGTCGGTCAGGTTCCCTGGAGATGCTCCGGCAATGGTGCCCCGGTGAAGAAA
766 GGAACCCCAATGCCACCGGTCAGG-----T-----T-CTCCGGCGATGGTGCCCCGGCGAAGAAA
* * * ** **
4579284 AATGTGGCACCAGCACAAGCCGGAGCCCAGTATGTGCTGCCGTAACCCT--T--G--
820 AATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGTCCGTT
4579335 -G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * *
4579382 ACCTATAAAACGAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATC-
66 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* * * * *
4579446 AGTCGGCTCCCCCTCTAGGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAG
131 A-TCGGGTCCCCCTCT-GGAGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAG
* * * *
4579511 AGTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAA-AATGAGCGGGCGGGCGAC-ACGCCGG
194 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAACAACGAGCGGGCGGGC-ACTACGCCGG
*
4579574 CCAGAGAGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
258 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
4579639 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
323 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * * *
4579704 CATGAGGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACGATTTTCGAAACTCTTTGCGGTT
388 CGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * * **
4579769 CAGGATTTTTTAAAATTTTTTTGGAAGCAGTTTTGGCCCCAAACTTGTTAGATTTGATCCTTGTA
453 CAGGATTTTTTAAAATTTTTTCGGAAGCGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
4579834 TTTTTGTTGGCATGCAAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
518 TTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
4579899 TTTGAAAAATGTGTTCCCATTTCAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCA
581 TTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
4579964 AATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCC
646 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** *
4580029 AAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCCTAATCTCTGGAATCCCA
711 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCTC-GGAACCCCA
* * * *
4580094 ATGCCACCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAAGGCGACAGCAACACATGC
775 ATGCCACCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC
*
4580159 CCGAGCCCAACATGTTCTGCCACAACCCTCAGTCCGGTT
840 CCGAGCCCAACATGTGCTGCCACAACCCTC-GTCC-GTT
* *
4580198 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTCTGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * *
4580263 ACCCACGAAACGAGCATGCGGGCGCTCAGCCGGTTAGAGGGGCAGGATGCACAAGCCGAGGATCG
66 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* * * * * *
4580328 GTCGGGTCCCCTTCTGTGAGCTACCGTTCCTACTACCACAACCCTCGGTCTGATCTGATCTTAGA
131 ATCGGGTCCCCCTCTG-GAGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGA
* *
4580393 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA-AACGAGCGGGCGGGCACTACGTCGGCT
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAACAACGAGCGGGCGGGCACTACGCCGGCC
4580457 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
260 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
4580522 TTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACG
325 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
4580587 TGAAGTTTCATGGCAAGACGA-CTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTC
390 TGAAGTTTCATGGCAAGACGACCCA-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * * *
4580651 GGGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCCCCAACCTTGGTAGACATGATCCTTGTAT
454 AGGATTTTTTAAAATTTTTTCGGAAGCGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
4580716 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTT
519 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
4580781 G-AAAATAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
584 GAAAAAT-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
4580845 TGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAA
648 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
4580910 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAA
713 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATC-TCGGAACCCCAA
* * * * *
4580975 TGTCGTCAGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
776 TG-C--CA--CCGG---T-C-A-GGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
*
4581040 CAGCACATGCCTGAG-CCAAGCATGTGCTGCCACAACCCTCGGTCC-TAT
830 CAGCACATGCCCGAGCCCAA-CATGTGCTGCCACAACCCTC-GTCCGT-T
* * ** *
4581088 CTAATCTTAGACTAGGAACAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTC
1 C-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
4581153 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-TGGGTGAT
65 AACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GAT
* * * * * * *
4581217 CGATCGGGTCCCCCTCTGCGTGTTACCGATCCTACTGCCGCAAACCTCAGTTCGGTCCGATCTTA
129 CGATCGGGTCCCCCTCTG-GAGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTA
* * *
4581282 GA-TCGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAACCGAGCGGGCGGGCGGGCGGGCGG
193 GACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AA-C-A--------ACGAGCGGGCGG
** *
4581346 GCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTA
246 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
4581411 GGCACATCTTCTTATTTCTCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCC
311 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
4581476 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAA
376 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTGAAA
* * *
4581541 CTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCAAAACTTGGTAGAC
441 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGCGGTTTTGGCCCCAAACTTGGTAGAC
* * * *
4581606 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCATCTGAAAACTCGAAGTGTATAAGAT
506 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
4581671 TTTGTGACCATTTGAAGAAA-GTGTCCCCATTTCGGACACTTTAATGGCTATTGGCTGTAAACCT
571 TTTGTGACCATTTGAA-AAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
4581735 GTAAAATCTCAAATGCTTTTTATGGGGATGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCA
635 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
4581800 AGATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCACACACC
700 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
4581848 ATGTGCACAC
Statistics
Matches: 2209, Mismatches: 230, Indels: 137
0.86 0.09 0.05
Matches are distributed among these distances:
855 63 0.03
856 1 0.00
858 1 0.00
861 2 0.00
864 51 0.02
865 217 0.10
866 27 0.01
867 207 0.09
868 1 0.00
870 4 0.00
871 2 0.00
872 4 0.00
873 2 0.00
874 175 0.08
875 3 0.00
877 2 0.00
878 7 0.00
879 203 0.09
880 27 0.01
881 447 0.20
883 4 0.00
884 2 0.00
885 3 0.00
887 1 0.00
888 1 0.00
889 2 0.00
890 10 0.00
891 266 0.12
892 2 0.00
895 1 0.00
903 467 0.21
904 1 0.00
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
ATCGGGTCCCCCTCTGGAGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAACAACGAGCGGGCGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG
GATTTTTTAAAATTTTTTCGGAAGCGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCTCGGAACCCCAATGCCA
CCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
CCAACATGTGCTGCCACAACCCTCGTCCGTT
Found at i:4581131 original size:26 final size:26
Alignment explanation
Indices: 4581093--4581148 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
4581083 CCTATCTAAT
4581093 CTTAGACTAGGAACAAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
* **
4581119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
4581145 CTTA
1 CTTA
4581149 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAACAAACTCCGTATG
Found at i:4581858 original size:15 final size:13
Alignment explanation
Indices: 4581827--4581860 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
4581817 TAGCACCCAT
*
4581827 CACACATCATGTG
1 CACACACCATGTG
4581840 CACACACCATGTG
1 CACACACCATGTG
4581853 CACACACC
1 CACACACC
4581861 CCCCGGTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.32, C:0.41, G:0.12, T:0.15
Consensus pattern (13 bp):
CACACACCATGTG
Found at i:4584558 original size:26 final size:26
Alignment explanation
Indices: 4584529--4584581 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4584519 CCAGTCCGCT
*
4584529 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
* *
4584555 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
4584581 C
1 C
4584582 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:4585017 original size:889 final size:895
Alignment explanation
Indices: 4581864--4601563 Score: 15307
Period size: 903 Copynumber: 21.6 Consensus size: 895
4581854 ACACACCCCC
* * * * * * *
4581864 CGGTCTGGTCCGATCTTAGACCGGGAATGAACTTCATATGTTTAGATTGGGAATGAACTTCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * * *
4581929 GCCTCAGTCAACCAACGAAACGAGCTTACAGGTGCTCAGTCGGCCAGAGGGGTGAGATGCAG-AA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAA
* ** * * * ** *
4581993 GCCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCTGGT
130 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
**
4582058 -TCGATCTTAGACT-GGAACAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
195 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-
* * ** * * * * *
4582121 AGCGAGCAGGCACTACGTCGGCCAGAGAGACGGGACACGCAAGTCATGGAACAATAGGGTGATAG
258 -G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
4582186 GCGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTGCCATTTTTGTGGGTTGTAAATTCATA
320 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
4582251 CAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGA
385 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * ** * *
4582316 TTTTCAAAATTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAAC
450 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* * * *
4582381 TTGGTAGACATGATCCTTGTATTTTTGTAGGAATGCAC-AAAAAATTCAGCCAAAAACTCGAAGT
515 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * *
4582445 GTACAAGATTTTGTGAGCACTTGAAAAAAGTGTCCCCATTTCAGATACTTCAATGGCTATTGGCA
580 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
4582510 GTAAACCTGTAAAATCTCAAATGCACTTTGAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
645 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** *
4582575 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACGTCATGTGCGCACACCCCCC-C-GG
710 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGG
* * * * * * **
4582638 CCCCCTTGATCGTCAGAACCCCAATGCTGCCGGTCAGGTTCTCCAGCGATGCTCCGATGATGGTG
775 CCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCT---GTG-T-CTCCGGCGATGGTG
* * * * ** *
4582703 CCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGGGCCCAGTATGTGCTACCGGAACCCT
833 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
4582766 CGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC-----CT---AA-G---T-C--A-
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4582815 ACC--A-T-----TA--AAACGAGCGTGCGAGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
4582870 CCGGGGATCGGCCGGGTCTCCCTCTGCATGCTACCAATCCTGCTACCACAAACCTTGATCCAGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC-AACC---CT-CAGTC
* * * * * * *
4582935 TGGTCCGATCTTAGAATGGGAATGAATTCTGTATGCCTAAGCCAACCAACGAATGAAGCG-GAAG
191 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A--AA-CGAG-CG
* * *
4582999 GGCAGGCGGGCGGACACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
251 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * **
4583064 GTTGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
316 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* ** *
4583129 CACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTTGTTTTCTATTTTTC
381 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
4583194 ATGATTTTCGAAACATTTTGCGGTTCGCGATTTTTTGAAATTTTTTCGGAAGGAGTTTT-GCCCC
446 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
** * *
4583258 AAACTTTTTAGACGTGA-CACTTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTC
511 AAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
4583322 GAAGCGTACAAGATGTTGTCACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
575 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
4583387 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAG
640 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * **
4583452 GGATAGGGGACCAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACACCCCCA
705 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC-
* ** * * * * * *
4583517 C-C-GGCACCCTCGATCATCGAAACCCCAACGCCGTTGGTCAGGTTCTCCGACGTTGCTCTGACG
769 CTCGGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCT--G-TG-T-CTCCGGCG
* * * *
4583580 ATGGTGCCCCGACGAAGAAAAAGACGGCACTAGCACATGCCTGAGCCCAGCATGTGCTGGCGCAA
827 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
4583645 CCCT
892 CCCT
* * * *
4583649 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----CT--GAGTCAAC-CC--A-
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
4583703 ---T--G--AA---A--AAA--A-CGTACGGGTGCTCAGCCGGCCAGAAGGGCGGG-TGACGTAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CGCAA
* * * * ** * **
4583752 GTCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCTG-TCCTGCTGCCATAACCCTCAGTTCTA
130 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-GATCCTGCTACCGCAACCCTCAGTCCGG
* *
4583816 TCTGATCTTAG-CTGGGAATGAACTCGGTATGCCTAAGCTAACCGACGAAACGAGCGGGCAGGCG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCG
* * * **
4583880 GGCGGGTGGGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAATGGTAG
255 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
4583945 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
320 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
4584010 CTATGGTCCCTTAAGCCCTT-ACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCACG
385 CAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
4584074 ATTTTCGAAACATTTTGCGGTTCGGGATTTTTTGAAATTTTTTTGAAAGGAGTTTT-GCCCCATA
449 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
* *
4584138 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAC
514 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
4584203 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
579 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
4584268 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGCT
644 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
4584333 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG
709 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGG
* **
4584398 GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA-G-CT-T-T-TCCGGCGATTATGCCCCGA
774 GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTCTGTGTCTCCGGCGATGGTGCCCCGA
*
4584458 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCT
839 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * *
4584515 CGGTCCAGTCCGCTCTTAGACCGGGAATGAACTCCGTATGCTTAGACTAGGATTGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
4584580 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * * * *
4584645 TCGGGGATCGACCGGGTACCCCTCTGCATGCTACCGATGCTACTGCCACAACCCTCAGTCCAGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* * * * *
4584710 TAATCTTAGACTGGGAATGAACTTCGTATTCCTAAGCCAACCGACGAAAAGAGTGGGCGGGCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
4584775 CGGGCACTACCCCGGCCAGAGAGACGTGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
261 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
4584840 TTAGGCTCATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACTATGG
326 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4584905 TCCCTTAAGCCTTCACTTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
391 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * *
4584970 AAACATTTTGCGGTTCGGGATTTTTTGAAATTTTTTTGAAAGGAGTTTT-GCCCCAAACTTGGTA
456 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
4585034 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACAA
521 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4585099 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
586 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4585164 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
651 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
4585229 CAATATAAGGGCCAAGTACCAGCACCCATCGTATATCATGTGCGCACA-ACCCCTCCGGCCCCCC
716 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCCCC
* * ** * *
4585293 GATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCTCCGATGATGGTGTCTC-A-
781 GATCGCCGGAACCCCAATGCCGTCGGTCAGG-TC--T-GTG-T-CTCCGGCGATGGTGCCCCGAC
* * *
4585356 GTAAAGAAAAATACGGCACCAGCACATGCGCGAGCCCAGTATGTGCTGTCACAACCCT
840 G--AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
** * * * *
4585414 CAATCCAGTCTGATCTTAGACTGAGATTGAACTCC----G--TAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
4585473 GCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** * * **
4585538 CCGAGGATCGGCTGGGTCCCCCTCTGCAAGCTCCCGATCCTGCTACCGTAACCCTCAG-CTTGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* * **
4585602 TGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCGAACTAACGAAACGA--------GCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
4585659 CGGGCACTACGCCGGGCAGAGAGACAGGATGTGCAAACCGTAGATCGATAGGGTGGTAGGTGGGT
261 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
4585724 TTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
326 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4585789 TCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
391 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* *
4585854 AAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
456 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
4585919 GACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAACATTCAGCTAAAAAGTCGAAGTGTACAA
521 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
4585984 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
586 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4586049 CTGTAAAATCTTAGATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
651 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * **
4586114 CAATATAAGGGCCAAGGACCACCACCCATCGTACATCATGTGTACACA-CCCCCT--GGCGCCCC
716 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGC-CCCC
* ** * * * *
4586176 CGACCATCGAAACCCCAATTCCGTCGGTCAGGTTCTTCGGTGATGCTCCAGCGATGGTGGCCCGA
780 CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TC-T--GTG-T-CTCCGGCGATGGTGCCCCGA
* * * * *
4586241 CGAAGAAAAATGC-GAACCAGCACATGCCCAAGCCCAGCATGTGCTTTGGCAACCCT
839 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * *
4586297 CGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
4586362 GCCTAAGTCAACCAATGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGTGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
4586427 TCGGGGATCGACCGAGTCCCCCTCTGCATGCTGCCGATCCTGCTACTGCAACCCTCAGTCCGGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT-
* *
4586492 CT-ATCTTAGACT-GGAATGAACTCCGTATGCCTAACCCAACCGACGAAATGA--------GCGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
4586547 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGG
260 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4586612 TTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTCAATTCATACAATG
325 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
4586677 GCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATCTTC
390 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * **
4586742 AAAACTTTTTGCGGTTC-AGGATTTTTCAAAATTTTTTTGGAAGGCTTTTTGGCCCCAAACTTGG
455 GAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGG
* *
4586806 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
519 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
4586871 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGGAGGAA
584 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
4586936 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGAGAGATAGGGG
649 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
4587001 GCCAATATAAAGGCCAAGTACCGGCACCCATTGTACATCATGTGCGCACACCCCCGC-CGGCCCC
714 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC-CTCGGGCCC
* * *
4587065 CCCGATCGTCGGAACCCTAATGCCATCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCC
778 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG---TCT-GTG-T-CTCCGGCGATGGTGCCCC
** * * *
4587130 GACGAAGAAAAATGTGGCAGCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
837 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * *
4587189 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * **
4587254 GCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGCCGGAGGGGTAGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
** * * * * * **
4587319 TTGGGGATCGGGCGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCGTAACCCTTGGTCCGGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* *
4587384 TGATCTTACACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCTGGTGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGG
* *
4587448 CGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGT
257 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
4587513 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
322 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * *
4587578 ATGGTCCCTTAAGCATGCCCGTGAAGTTTCTTGGCAAGTCGACTTGTTTTCTATTTTTCACGATT
387 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
4587643 TTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTCGCCCCAAACTT
452 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* * * *
4587708 GGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACTGGAAGTGT
517 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
4587773 ACATGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGC
582 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
4587838 AAACCTGTAAAATCT-AAAGTGCTCTTTAAGGGAGTGTTAGTTCTCGAGGTTTGATGAGGGATAG
647 AAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
4587902 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGAGTGCACATCCCCCC-C-GA
711 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCTCGGG
* *
4587965 CCCCCCGATCACCGGAACCCCAATGCCG-CTAGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTG
775 CCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGG---TCT-GTG-T-CTCCGGCGATGGTG
** ** * *
4588029 CCCCGATAAAGAAAAATGTGGCACCAGCACATGCGCGAGCCCAGCATGTGCTGCCGCAACCCT
833 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
4588092 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACAT-CGTA
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCGTA
* * * **
4588156 TGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAAAGGCGGGATGCGCAA
65 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
4588221 GCCGGGGATCGGCTGGGTCCCCATCTGCGTGCTTCCAATCCTGCTCCCGTAGCCCTCAGTCCGGT
130 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
*
4588286 CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G
* * *
4588351 GCAGACGGGTGCACATTACGCCAGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGG
259 G--G-C-GG-GCAC--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
4588416 TAGGTGGGTTTAGGCACAGCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCTTGTAAATTC
317 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
4588481 ATACAATGGTCCTTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTCTTCA
382 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** * * * * *
4588546 TGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGGCCCA
447 CGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCA
* * * *
4588611 AACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGAAAAAAAAAATTCAGCTAAAAACT-GA
512 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-
* * **
4588675 AAGTGTACAAGATTTTGTGACAATTT-AAAAAGGTGTCCCCATAACAGACACTTTAATGGCTACT
576 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
4588739 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
641 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
4588804 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATGATGTGCGCACACCCCCCT
706 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCT
* * * * * *
4588869 -GGCCCCCCCGATCACCGAAACCCCAATTCTGTCGGTCAGGTTCT-TCGGCAATGCTCCGGTGAT
771 CGGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCTGT--G---T-CTCCGGCGAT
* * * *
4588932 GATGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAACC
829 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
*
4588997 TT
894 CT
* *
4588999 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
4589064 GCCTAGGTTAACCCACGAAATC-AGCGTGCGGGCGCTCATTCGGCCAGA-GGGCGGGATGTGCAA
66 GCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * ** * * ** **
4589127 GCCAGGGATCGACCGGGTCCCCCTTTATGTGCTGTCGATCCTACTACCGCAACCCTTGGTCCAAT
130 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
* * * * * *
4589192 CTAATTTTAGACTGGGAATGAACTCCGTATGGCTAAGCGAACCGATGAAACGAGCGGGCGGGTGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * *
4589257 GCAGGCACTATGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
260 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
4589322 TTTAGGCACATCTTTATATTTTTGCGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATG
325 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
4589387 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCATGATTTTT
390 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * * *
4589452 GAAACTTTTTACGGTTTGAAATTTTTTAAAA-TTTTTTCAGCAGCAGTTTTGGCTCCAAACTTGG
455 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGG
* *
4589516 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTAC
519 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
4589581 AAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGGAA
584 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * **
4589646 ACCTGCAAAATCTCAAATGCTCTTTAAGGCGGTGTGAATTCTCGAGGTTTGATGACTGATAGGGG
649 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * ** *
4589711 CCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGTGCACCCCCC-CGGCCCCC
714 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCC
* * *
4589775 CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCG
779 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGG---TCT-GTG-T-CTCCGGCGATGGTGCCCCG
** * *
4589840 -CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCGCAACCCT
838 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * *
4589897 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4589962 GCCTAGGTCAACCCACAAAACGAACGTGCGGGCGCTCAGCCAGCC-GAAGGGGCGGGATACGCAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAA
* * * * * * * *
4590026 GCTGGGGATCGGTCGGGTTCCCCCTCTGTGTGTTGTCGATCCTGCTGCCGCTACCCTCGGTCCGG
130 GCCGGGGATCGGCCGGG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGG
* * * *
4590091 TCCGATCTTACACT-AGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGTG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----G
* *
4590155 GGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
255 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
4590220 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
320 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
4590285 CAATGGTCCCTTAAGCATGCCCGTGAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTCACGA
385 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
4590350 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
450 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* * * * *
4590415 TTAGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACACGAAGT
515 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4590480 GTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCA
580 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
4590545 GCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATA
645 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * **
4590610 GGGGGCCAATATAAGGGCCAAGAACCAGCACCCCTTGGACATCATGTGCGTGCAGCCCCCCT--G
710 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCTCGG
* * * *
4590673 ACCCCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT
774 GCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGG---TCT-GTG-T-CTCCGGCGATGGT
* ** *
4590738 GCCCCGACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCACCATGTGCT-TCCGCAACCCT
832 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT-CGCAACCCT
* * * *
4590802 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4590867 GCCTAGGTCAACCAACGAAACGAGCGTACGGGCACTCAGCCAGCC-GAAGGGGCAGGGATGCGCA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGC-GGGATGCGCA
* * * * * *
4590931 AGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCGCTACCCTC-GATCCG
129 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCCG
* *
4590995 GTCTGATCTTACACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGT
193 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----
4591059 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
254 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
4591124 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
319 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * *
4591189 ACAATGGTCCCTTAAGCATGCCCGTGAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTCATG
384 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
4591254 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTCGAAAGGACTTTTGGCCCCAAA
449 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
* * * * *
4591318 CTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACACGAAA
514 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
4591383 TGTACAAGGTTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTTCTGGC
579 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
4591448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGAT
644 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
4591513 AGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGTACATCATGAGCGCACATCCCCCC-CG
709 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCTCG
** * *
4591577 ACCCCCCCGATCGCCGGAACCCCAATGCCG-CTAGTCAGGTTCTCCGGTGATGCTCCGACGATGG
773 GGCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGG-TCT---GTG-T-CTCCGGCGATGG
* * ** * * *
4591641 TGCCCCGATGAGGAAAAATGTGGCACCAGCACATGCGCGAGCCCAACATGTGCTGCCGCAACCCT
831 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * *
4591706 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGAATGAACACCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * * * ** * *
4591771 GCCTAAGTCAACCCATAAAACGAGCATGCGGGTGCTCAACCGGCCAGAAAGGCAGGACGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
4591836 CTGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTCCCGCAGCCCTCAGTCCGGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
** * *
4591901 CAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAGGAAACGAGTGGGCGGGCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGG
*
4591966 CGGGCGGGTGCGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
257 CGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
4592031 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
318 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
4592096 TACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
383 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * * **
4592161 GATTTTCAAAACATTTTACGGTTCGGGATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGGGCCAA
448 GATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAA
* * *
4592226 ACTAGGTAGACATGATCCTTG-----TTGTTGGCATGCGA-AAAAAAATTCAGCTAAAAACTCAA
513 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGA
* * **
4592285 AGTGTACAAGATTTTGTGACAATTT-AAAAATGTGTCCCCATACCAGACACTTTAATGGCTACTG
577 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * **
4592349 GTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACCTTTGATGAGGG
642 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
4592414 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACA--CCCCTC
707 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTC
* * * * * * *
4592477 GGGCCCCCCCGATCACCGAAACCCCAATTCTGTCGATCAGGTTCTTTGGCAATGCTCCGGTGATG
772 GGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCTGT-G---T-CTCCGGCGATG
* * * * *
4592542 GTGCCCCGATGAAGAAAAATACGGTATCAGCACATGCCCTAGCCCAGCATGTGTTGTCGCAACCC
830 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
4592607 T
895 T
* * *
4592608 CGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * ** * *
4592673 GCCTAGGTCAACCCACGAAATGAGCGTGTGGGCGCTCATTCGGCCAGAGGGGCGAGATACGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * ** **
4592738 CCGGGGATCGACCGAGTCCCCCTCTACGTGCTGTCAATCCTACTACCGCAACCCTTGGTCCAATC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* * *
4592803 TAATTTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* ** *
4592867 CAGGCACTATACCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
261 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
4592932 TTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGG
326 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
4592997 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
391 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * * *
4593062 AAACTTTTTGCAGTTCGGGATTTTTTAAAA-TTGTTTAAGAAGGAGTTTTGACCCCAAACTTGGT
456 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGT
* *
4593126 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACA
520 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
4593191 AGATTTTGTGACCATTTGAGAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAA
585 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4593256 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
650 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
4593321 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACA-CCCCCT-GGCCCCCC
715 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCCC
* * * * * *
4593384 CGATCGTCAGAACCCCAATGCCGCCGATCAGGTTCTTCGACGATGCTCTGGCGATGGTGCCCCGA
780 CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TC-T-G-TG-T-CTCCGGCGATGGTGCCCCGA
* * * * * *
4593449 TGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGCATGTGCTGTC-TAACCCT
839 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * * ** * * * * *
4593505 CAGTCCGATCC-AAC-T-GA-T-GAAATG-AGT--GGGTG-TGAG-CAGGCG--GGCACTACGTC
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-GAATGAACTCCGT-
** * * ** * ** * **
4593558 A-GCC-AGAG--AGACGGGATGCGCAA-G-TCGTG-GATCACT-AG--GG-TGGTAGGTG-GGTT
64 ATGCCTA-AGTCA-AC-CCA--CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGA
* ***** ** *** * ** ** * * *
4593611 TAG-GCACATCTTCATATTTCTACGTGCC-AATGCCATTTTTAAG-GCTTG-TAATTTCATACAA
123 T-GCGCA-AGC--C--GGGGAT-CG-GCCGGGT-CCCCCTCTGCGTGC-TGCCGA--TCCTGCTA
** * * ** ** * * ** ***
4593672 TGGC--CCCTTAAG-CC-TTCACGTGAAGTTTCA-TGGCAA-GACGACT-CAT-TTTCTATTTTT
176 CCGCAACCC-TCAGTCCGGT--C-TGATCTTAGACTGGGAATGA--ACTCCGTATGCCTA--AGC
***** * * * * ********* * *** ***
4593729 CATGATTTTTGTAACTTTTTA-CGGTTCGAGATTTTTTAAAATATTTTCGG--A-AG-GA-GTTT
233 CA--ACCGACGAAAC----GAGCGG-GCGGGCGGGCGGGCACTA-CGCCGGCCAGAGAGACGGGA
* * * * * * ** * * *** * *** * * *
4593788 TGGCCCAA-ACTTGG-TAGA-CGTGATCCTTGTTTTTTTGTTGGCATGCA-CAAAAAAATTCAGC
290 T-GCGCAAGCCGTGGATCGATAG-GGTGGTAGGTGGGTT-TAGGCA--CATCTTCATATTTCTGC
** * * * * *
4593849 TAAAAACTCAAAGTGTGCAAGATTTTTGTGACCATT-TGAA---A-A-AA-GTGTCCCCATTTCA
350 ---ATGC-C-AA---TGC--CATTTTTATG-GC-TTGTAAATTCATACAATG-GT-CCC--TTAA
* * * * * * * * * * **
4593907 GACACTTTA-ATG--GCTAC-TGGC-AG-CAAAC-CTGTAAAATCTCAAATGCGCTTTAAGGGGG
399 G-C-CTTCACGTGAAGTTTCATGGCAAGAC-GACTC-GT----TTTC-TAT---TTTTCA-CGAT
* * * ******* * **** ** ****
4593965 TGT-G--AGTTTTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCA--AGTACCAGCAC
451 TTTCGAAACTTTTTGCGG-TTC--GA--GAT-TTTTTAAAATTTTTTTGAAAGGAGTTTTGGC-C
* * ** ** * * ** * ** ****
4594025 CCATCGCATATCATGTGCTCACACCCCCCCGCCCCTTCTA---TCGACGG-A-AC-CCCAAGGCC
509 CCA----A-A-C-T-TGGT-AGA----CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * **** ** * * * *** * **
4594084 GCCGATCAGGTTCTTCGGCAA-TGCT-CCGGCA-ATGGTGCCCCGATGAATAAAAATG-CGGCA-
561 TCAGCT-AAAAAC-TC-G-AAGTG-TACAAG-ATTTTGTGACCATTTGAA-AAAAGTGTCCCCAT
* * *** * * * * * * *** *
4594144 -CCAG-CACATGCCTGAGCCCAGCATGTGCTACCGTAACC-CT-CAGTC-CGGTTCGATC-TTAG
619 TTCAGACACTTTAATG-G-CTA-C-TG-GC-AGC-AAACCTGTAAAATCTCAAAT-GCTCTTTA-
** ** ** * * * * **** * * *
4594203 ACTGGGAATGAACTC-CATATGCTTAGACTG-GGAAT-GAACTCC-GTATGCCTAGGTCAACCCA
675 AGGGGGTGTGAGTTCTC-GA-GGTTTGA-TGAGGGATAGGGGGCCAATAT---AAGG----GCCA
* * * * * * * * *
4594264 CGAAACGAGCGTACGGGTGCTCATTCGGCCAGAGAGGCAGGATGCGCA-AGCCGGGGATCGACCA
730 AG-TACCAGC--AC-----C-CA-TC-G---TACA-TCATG-TGCGCACA-CC------C-CCCT
* ** * *** * * * * * * * *
4594328 AGTCCCCCTCTACGTGTGATCGATCTTGCTGCCGCAA--CCCTTGGTCCGATCTGATGTGTGC-A
771 CGGGCCCC-C--C----GATCG--C-CGGAACCCCAATGCCGTCGGTCAGGTCTG-TGTCTCCGG
* * * *** * * ** * **** *
4594390 TGATTTTGTG-ACC-A-TTTGAAAAA-ACTG-TCC--C-CATTTCAGA-CACTTTAATGGCTACT
825 CGA--TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC-CCAGCAT-G-TGCT
* * *
4594446 GGCAGGAAACCT
885 GTC-GCAACCCT
** ** * * * ** ** ** * * *
4594458 GCAAAATCTCAAATGC-TTTTTA-AGGGGGTGTGAGTTCTCG-A-GGTTTGA-TGAAGGATAGGG
1 -C--GGTC-C-GGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTG--GGA-A-TG
** ** * * * ** * * **
4594518 GGC-CAATATAAGGGCC-AAGTACTAGCACCCATCGCACATC-A-TGTACGCACACCCCCCCGGC
56 AACTCCGTAT----GCCTAAGT-C-A--ACCCA-CG-A-AACGAGCGTGCGGGCGCTCAGCCGG-
* ** * ** * * * * * **
4594579 CCCCCGA-TCGCTGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGTTGGTGCCCC-AAGCATG
109 --CCAGAGGGGCGGGATGCGCAA----GCCGG---GG--ATCGGCCG--GGTCCCCCTCTGC--G
* * * * * * * * * *
4594642 TGATACCACAACCCTCGGTCCCGTCCAA-TCTTAGACTGTGAATGAACTCCGTATGCTTAGACTG
159 TGCT-GC-CGATCCT-GCTACCG--CAACCCTCAGTCCG-G--T---CT--G-AT-CTTAGACTG
*** ** * *** **
4594706 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAA-GTCAACCCCCGAAACG
209 GGAATGAACTCCGTATGC-----CTA--AGCCAAC--CG-A--CGAAACG--AGCGGGCG-GGCG
* * *** * * * * * * * ***
4594770 AGCGTGC-GGGCGCTCAGCCGATCAGAGGGGCGGGCTGCGCAAGTCGGGGATCGATCGGGTCCCC
259 GGCGGGCACTACGC-C-GGC---CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGT
*** * * * * * * *** * * * * * *
4594834 CTCTGTGTCCT-GTCGATCTTGCTGCCGTAACCCTTCAT-CCAGT-CTGA-TGTTA-GACTTG-G
318 AGGTGGGT-TTAGGC-A-CAT-CT-TCATATTTCTGCATGCCAATGC-CATTTTTATGGCTTGTA
* ** ** ** * ** * ** *
4594893 AA-TGA-ACTCT-GTATGCTTAAGCCAACCGACG-AAACG-AGCGGACGGGCGGGCAGGCACTAC
377 AATTCATACAATGGT-CCCTTAAGCC-TTC-ACGTGAA-GTTTC--A-TGGCAAG-ACG-ACT-C
**** * ***** *** * * * * * * * * **
4594953 GCCGGCCA-GGGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAAGGCAC
432 GTTTTCTATTTTTCACGATTTTCG-AA-AC-T-TTTTG--CGGTTCG-AGAT-TTTTTAA---A-
* * *** ** * * *
4595017 ATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAA-TTCATACA-ATGGTCCCTT
485 A--TT--T-TTT-TG-A----AA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACGTGAT-CCTT
** ** * * *** * **
4595080 AAGCCTTCACGAGCAGTTTCATGGCAAG-ACAACTCGTTCTTTATTTTTCACGATTTTTGAAACT
533 --G---T----A--TTTTTGTTGGCATGCACAA---------AAAAATTCA-G---CTAAAAAC-
*** * * * ** ** *
4595144 TTTTA-TGGTTCAGGATTTT-TTAAAATTTTTTCGAAAGAATTTTTGGCCCCAAACTTGGT-AGA
573 TCGAAGT-GTACAAGATTTTGTGACCA---TTT-GAAA-AA--AGTGTCCCC--A-TT--TCAGA
* *** ** * * * * *
4595206 CGTGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAC
625 C---A--CTT-TAATGGCTACTGGCA-G--C----AAA-CCTG-TAAAATCTC-AAATG--C-TC
* ** * * * * * * ** *
4595271 ATTT-TGTGGCCATTTGAAAAAAGTGTCCCCA--TTTCAGACACGTTAATGGCTACTGGCAGCAA
671 -TTTAAG-GG-GGTGTG-----AGT-TCTCGAGGTTT--G--A---TGAGGGATA--GGGGGCCA
* *** * * * **** ** ** * *** ****** *
4595333 ACCTGTAAAATCGCAAATTCCTTTTA-AAGGGGT-GTGAGTTTTTGAG-GTTTGATGAGGGATAG
718 A--TATAAGGGC-CAAGTACC----AGCACCCATCGT-ACATCATGTGCG-CACA-CCCCCCTCG
** *** * * * * * * ** * * ** ***
4595395 GGGACCAATATAAGGGCCAAGTACCAGC-A-CCCATC-G-CACATCATGTGCGCACACCCCCCCG
773 GGCCCCCCGAT---CGCC-GGAACC-CCAATGCCGTCGGTCAGGTC-TGTG-TCTC-CGGCGATG
* ** * * * ** * *
4595456 GTCCCCCCGATCGTCGGAACGCCAATGCCGC-CGGTCAGGTTC-TTCGACGATGCTCCAGCGATC
830 GT-GCCCCGA-CG-AAGAA---AAATACGGCAC---CA-GCACATGC-CCGA-GC-CCAGC-AT-
* * * *
4595519 GTGCCCCGACGAAGAAAAATGAGGCACCAG
880 GTG--CTGTC---G---CA--A--C-CC-T
** * * * * *
4595549 CACATGCTTGAGCCCAGCATGTGCTATCACAACCCGCGGTTCGGTCCGATCTTAGACTGGGAATG
1 C-GGT-C-CG-GTCC-G-A--T-CT-T-A-GA----C---T-GG---GA-ATGA-AC------T-
* * *
4595614 AACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGC
34 --C--CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
4595679 GGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGTAAGCCGGGGATCAGTCGGGTCCCCCTCTACGT
95 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGT
* * * * * * * * **
4595744 GATGCCGATCCTACTGCTGTAACCCTCGGTCCGATCTGATCTTAGACTGCGAATGAACTTTGTAT
160 GCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ** *
4595809 GCCTAAGCCAACTGACAAAATGAGCAGGCGGGCGAGCGGGCGAACACTACGCTAGCTAGAGAGAC
225 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG-G--CACTACGCCGGCCAGAGAGAC
* * * *
4595874 AGGATGCGCAAGCCATGGATCGCTGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
286 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
4595939 TGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
351 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
4596004 CATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTTGGGATTTTT
416 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTT
* *
4596069 TAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
481 TAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * * *
4596133 GCAAGCATAAAAAAATTCAGCTAAAAACTCCAAATGTACAAGATTTTGTGGCCATTTGAAAAAAG
545 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
4596198 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
610 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
4596263 AGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCA
675 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
4596328 CCCATCGCACATCATGTGCGCACA--CCAC-C-GGCCCCCCGATCACCGGAACCCCAATGCCGTC
740 CCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCCCCGATCGCCGGAACCCCAATGCCGTC
* * * * * * *
4596389 GGTCAGGTTCTTCGGCGATGCTCCGGCAATGGTGGCCCGATGAAGAAAAATGCAGCAACAGCACA
805 GGTCAGG-TC-T--GTG-T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* *
4596454 TGCCCGGGCCCAGCATGTGCTGCCGCAACCCT
864 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
4596486 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * *
4596551 GCCTAAGTCAACCCACGAAACGAGCGTTAGGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** *** * *
4596616 TCGGGGATCGGCCGTGTCCCCCTCTATGTGCT-CTCGATCCTGCTGTTGCAGCCCTCAATCCGGT
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-CGATCCTGCTACCGCAACCCTCAGTCCGGT
* * *
4596680 CTGATCTTAGACTGGAAATGAAGTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCCGA
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--G-
* * * * *
4596745 ACGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGG
257 -CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
***
4596810 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
321 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
4596875 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
386 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * **
4596940 TTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCC-AA--
451 TTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACT
*
4597002 ----AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATACAAGGATCACGTCTTTGG
516 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAT-------TCA-G-C--T--
* * *
4597063 GGCCAAAACTCCTTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCA
567 ----AAAA---------AC--------TC-G-----AA---G-TGT-A-CAAGATTTTGTGACCA
* * *
4597128 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAACTGTCAAATCTCA
599 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
4597193 AATTC-CTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
664 AATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ** * *
4597257 CAAGTACCAGCGCCCATCACACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAAA
728 CAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCCCCGATCGCCGGAAC
* * * * *
4597320 GCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAAGGTGCCCCGACGAAGAAAAATGA
793 CCCAATGCCGTCGGTCAGG-TCT---GTG-T-CTCCGGCGATGGTGCCCCGACGAAGAAAAAT-A
* * * ** *
4597385 -GGCACCAGCACATGCCTGAGCCCAGTATGTCCTACCGTAACCCT
851 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * *
4597429 CGATTCGGTCCGTTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGAAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * *
4597494 GCCTAAGTTAACCCGTGAAACGAGCGTGCGGGCGGTCTGCCGGCCAGAGGGGCGGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
** * * * * * * * * *
4597559 TTGGGGATCAGTCGGATCCCCCTCTACATGCTGCTGATCCTGCTACCGTAACCCTCAGTTCAGT-
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* *
4597623 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCAA
196 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG---
*
4597688 GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC-ACTAGGGTGGTAG
256 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAG
* * *
4597752 GCGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATA
320 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
4597817 CAATGGCCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGA
385 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * * *
4597882 TTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAAATTTTTTGGAAGGATTTTTGGCCCCAAAC
450 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
*
4597947 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTC-ATAG
515 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AG
* * *
4598011 TGTACAAGATTTTATGGCCATTTGAAAAAAGTGTCCCCATATT-AGACACTTTAATGGCTCCTGG
579 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGG
* *
4598075 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGACGGA
643 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
4598140 TAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-C-
708 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCG
* * *
4598202 GGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGG
773 GGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TC-T-G-TG-T-CTCCGGCGATGG
* * * * * *
4598267 TGCCCCGATGAAGAAAAATATGGCTCCAGCACATGCCCGAGCCTAGCATGTGCTATCGTAA-CC-
831 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
4598330 C--T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCTGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
4598371 GCCTAAGTTAACCCACGAAACGAGCGTACGGTTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** ** * * * * *
4598436 CTGGGGATCAGTTGGGTCCCATTCTACGTGCTGTCAATCCTGCTGCCGCAACCCTCGGTCCGGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* ** * * **
4598501 CGATCTTAGACTACGAATGAACTCCATAAGCCTAAGCCAACCGATTAAACGAGCGGACAGGCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G---GGCGGG
* * *
4598566 CGGGCGGGCACTACGCCCTGCCAGAGAGACAGGATGCGCAATCCGTGGATCGATAGGGTGGTAGG
257 CGGGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
** * * **
4598631 TGGGTTTAGGTGCATCTTCATATTTCTACGTGCCAAACCCATTTTTATGGCTTGTAAATTCATAC
321 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
4598696 -ATGGTCTCTTAAGCCTTCACGTGAAATTTGATGGCAAGACTACTCGTTTTCTATTTTTCATGAT
386 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
4598760 TTTCGAAACATTTTACGGTTGGGGATTTTTTAAAATTTTTTTGAAAGAAGTTTTAGCCCCAGAA-
451 TTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCA-AAC
* * * * ** *
4598824 TTGGTAGATGTGGTCCTCGTATTTTTTTTTCCATGCACAAAAAAATTTAGCTAAAAACTCGAAGT
515 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
4598889 GTACAACATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGTCACTTTAATGGCTACTGGCT
580 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4598954 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGACGGATA
645 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * * *
4599019 GGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCA-AACCTCCTC-GC
710 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGG
** * * * * *
4599082 CCCCCCGATCATCGGAACCTCAATGCCGCCCGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGC
775 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCT---GTG-T-CTCCGGCGATGGTGC
** * * *
4599147 CCCGGA-GAAGAAAAATGTGGCACCAGCACAT-CCCGAGCCTAGCATGTGCTGTTGTAACCCT
834 CCC-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* *
4599208 CGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAGCTCTGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG----GA-------AT
* *
4599273 GCTTAGACTGGAAAAGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAG
55 G---A-ACT---------C-C-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *
4599338 TCGGCCAGAGGGGTGGGATGAGCAAGCCGGAGATCGGTTGGGTCCCCCTTTGCATGCTGCCGATC
105 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
4599403 CTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCCA
170 CTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
4599468 ACCGACAAAACGAGCGAGAGGCCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGTA
235 ACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
4599533 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCC
296 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
4599598 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
361 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * ** * *
4599663 TGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGCCTAGGGATTTTTTAAAATTTTT
426 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * *
4599728 TCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
491 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
4599793 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCAT
555 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCAT
4599858 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
619 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * * *
4599923 GAGGTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTATCGGCACCCATCGCA
684 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTA
* * ** * *
4599988 CATCATGTGCGCACACCCCACCCCCGATCTCCAGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
749 CATCATGTGCGCACACCCC-CCTCGGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-
* * ** * *
4600053 TCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACCGCACC-GACACATGCCCAA
812 TCT--G-TG-T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-CACATGCCCGA
* *
4600117 GCCCAGCATGTGCTGCCACAACCCT
871 GCCCAGCATGTGCTGTCGCAACCCT
* * * * *
4600142 CGGTCCGATCTGATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * * * *
4600207 GCCTAAGTCAAACCATAAAATGAGCGTGCAGGCGCTCAGTCGGCCAAAGGGGCGGGATGCG-ACA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-A
* * ** * * ** *
4600271 GCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTATCGATCTTGCTGCCGCAACCCTTGGTTCGGT
130 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
*
4600336 CTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAACGA--------GCGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
*
4600393 GCGGGCACGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
260 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
4600458 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATG
325 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** *
4600523 GTCTTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
390 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
4600588 AAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCACAAACTTGGT
455 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
4600653 AGAAGTGATCCCTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAAATCGAAGCGTACA
520 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4600718 AGATTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAA
585 AGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
4600783 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
649 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
4600848 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCT-GGCCCCC
714 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCC
* * * *
4600911 CCGATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGCCGATGCTTCGACGATGGTGCCCCG
779 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCT--G-TG-T-CTCCGGCGATGGTGCCCCG
*
4600976 ACGAAGAAAAAT---G---C-G-----G--C-A---C--CA--------CGCAACCAT
838 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
* * * * * *
4601006 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGGTTACACTAGGAATGAACTTCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
4601071 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * * * *
4601136 CTGGGGATTGGCCGGGTTCGCCTTTGCGAGCTGCCAATCCTTCTACCACAACCCTCAGTCTGGTC
131 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* * *
4601201 TGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAGGAACGGGCGGGCGGG
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGG
* * * * * *
4601266 CGGGTGGGTACTACGTCGACCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
257 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
4601331 GGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTTTAAATTCATGCA
322 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
4601396 ATGGTCTCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
387 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *** *
4601461 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCCCAAACAT
452 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* * *
4601526 GGTAGATGTGATCCTTGTATTTTTTTTGGCATGTACAA
517 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
4601564 GTGGGCGGGC
Statistics
Matches: 15301, Mismatches: 2562, Indels: 1896
0.77 0.13 0.10
Matches are distributed among these distances:
864 211 0.01
865 1 0.00
866 104 0.01
868 5 0.00
871 2 0.00
872 2 0.00
873 8 0.00
874 8 0.00
875 2 0.00
876 381 0.02
877 1141 0.07
878 143 0.01
879 5 0.00
880 8 0.00
881 67 0.00
882 455 0.03
883 288 0.02
884 301 0.02
885 258 0.02
886 38 0.00
887 21 0.00
888 76 0.00
889 1134 0.07
890 24 0.00
891 89 0.01
892 490 0.03
893 432 0.03
894 44 0.00
895 190 0.01
896 306 0.02
897 46 0.00
898 601 0.04
899 526 0.03
900 82 0.01
901 460 0.03
902 343 0.02
903 1264 0.08
904 1160 0.08
905 538 0.04
906 163 0.01
907 354 0.02
908 674 0.04
909 46 0.00
910 8 0.00
911 3 0.00
912 7 0.00
913 5 0.00
914 3 0.00
915 3 0.00
916 2 0.00
917 18 0.00
918 11 0.00
919 10 0.00
920 22 0.00
921 23 0.00
922 21 0.00
923 24 0.00
924 9 0.00
925 1 0.00
926 2 0.00
927 109 0.01
928 318 0.02
929 65 0.00
930 140 0.01
931 6 0.00
932 12 0.00
933 78 0.01
934 69 0.00
935 3 0.00
936 2 0.00
937 3 0.00
938 5 0.00
939 4 0.00
940 2 0.00
941 171 0.01
942 12 0.00
943 554 0.04
944 10 0.00
945 2 0.00
946 1 0.00
948 1 0.00
949 19 0.00
950 33 0.00
951 9 0.00
952 6 0.00
953 18 0.00
954 10 0.00
955 7 0.00
956 11 0.00
957 7 0.00
958 18 0.00
959 9 0.00
960 8 0.00
961 14 0.00
962 11 0.00
963 11 0.00
964 10 0.00
965 4 0.00
966 2 0.00
967 9 0.00
968 3 0.00
969 3 0.00
970 6 0.00
971 7 0.00
972 4 0.00
973 6 0.00
974 2 0.00
975 8 0.00
976 5 0.00
977 4 0.00
978 1 0.00
980 6 0.00
981 3 0.00
982 5 0.00
983 4 0.00
984 2 0.00
985 2 0.00
986 5 0.00
987 7 0.00
988 5 0.00
989 4 0.00
990 1 0.00
991 6 0.00
992 12 0.00
993 4 0.00
994 3 0.00
997 2 0.00
998 3 0.00
999 1 0.00
1000 2 0.00
1001 15 0.00
1002 10 0.00
1003 3 0.00
1004 2 0.00
1005 1 0.00
1006 15 0.00
1007 7 0.00
1008 18 0.00
1009 9 0.00
1010 2 0.00
1011 15 0.00
1012 7 0.00
1013 7 0.00
1014 7 0.00
1015 12 0.00
1016 8 0.00
1017 21 0.00
1018 21 0.00
1019 10 0.00
1020 1 0.00
1021 6 0.00
1022 8 0.00
1023 3 0.00
1024 206 0.01
1025 150 0.01
1026 122 0.01
1027 149 0.01
1028 109 0.01
1029 85 0.01
1030 138 0.01
1031 211 0.01
1032 147 0.01
1033 157 0.01
1034 114 0.01
1035 120 0.01
1036 739 0.05
1037 116 0.01
1038 110 0.01
1039 143 0.01
1040 132 0.01
1041 124 0.01
1042 61 0.00
1043 76 0.00
1044 51 0.00
1045 266 0.02
1046 72 0.00
1047 70 0.00
1048 61 0.00
1049 40 0.00
1050 40 0.00
1051 22 0.00
1052 35 0.00
1053 310 0.02
1054 145 0.01
1055 61 0.00
1056 50 0.00
1057 46 0.00
1058 187 0.01
1059 273 0.02
1060 177 0.01
1061 86 0.01
1062 62 0.00
1063 69 0.00
1064 69 0.00
1065 75 0.00
1066 100 0.01
1067 116 0.01
1068 126 0.01
1069 53 0.00
1070 62 0.00
1071 58 0.00
1072 76 0.00
1073 96 0.01
1074 68 0.00
1075 47 0.00
1076 24 0.00
1077 25 0.00
1078 34 0.00
1079 22 0.00
1080 28 0.00
1081 13 0.00
1082 34 0.00
1083 45 0.00
1084 57 0.00
1085 30 0.00
1086 35 0.00
1087 100 0.01
1088 186 0.01
1089 14 0.00
1090 11 0.00
1091 7 0.00
1092 222 0.01
1093 6 0.00
1094 5 0.00
1095 5 0.00
1096 10 0.00
1097 14 0.00
1098 8 0.00
1099 6 0.00
1100 2 0.00
1101 12 0.00
1102 13 0.00
1103 9 0.00
1104 8 0.00
1105 3 0.00
1106 3 0.00
1107 2 0.00
1108 2 0.00
1109 6 0.00
1110 1 0.00
1111 2 0.00
1112 7 0.00
1113 13 0.00
1114 2 0.00
1115 16 0.00
1116 5 0.00
1118 5 0.00
1119 5 0.00
1120 5 0.00
1122 6 0.00
1123 16 0.00
1124 4 0.00
1125 11 0.00
1126 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGGGCCCCCC
GATCGCCGGAACCCCAATGCCGTCGGTCAGGTCTGTGTCTCCGGCGATGGTGCCCCGACGAAGAA
AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
Found at i:4585455 original size:20 final size:20
Alignment explanation
Indices: 4585430--4585471 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
4585420 AGTCTGATCT
*
4585430 TAGACTGAGATTGAACTCCG
1 TAGACTGAGAATGAACTCCG
*
4585450 TAGACTGGGAATGAACTCCG
1 TAGACTGAGAATGAACTCCG
4585470 TA
1 TA
4585472 TGCCTAAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (20 bp):
TAGACTGAGAATGAACTCCG
Found at i:4586340 original size:26 final size:26
Alignment explanation
Indices: 4586311--4586363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4586301 CTGGTCCGAT
*
4586311 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4586337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4586363 C
1 C
4586364 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4587239 original size:26 final size:26
Alignment explanation
Indices: 4587203--4587255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4587193 CCGGTCTGAT
*
4587203 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
4587229 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
4587255 C
1 C
4587256 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4588135 original size:26 final size:26
Alignment explanation
Indices: 4588106--4588158 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4588096 CCGGTCCGAT
4588106 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACAT-CGTATG
4588132 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
4588158 C
1 C
4588159 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:4589042 original size:26 final size:26
Alignment explanation
Indices: 4589013--4589065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4589003 CTGGTCCGAT
*
4589013 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4589039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4589065 C
1 C
4589066 CTAGGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4589947 original size:26 final size:26
Alignment explanation
Indices: 4589911--4589963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4589901 CTGGTCTGAT
*
4589911 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
4589937 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
4589963 C
1 C
4589964 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4590480 original size:903 final size:902
Alignment explanation
Indices: 4581864--4593495 Score: 14727
Period size: 904 Copynumber: 13.0 Consensus size: 902
4581854 ACACACCCCC
* * * * * * *
4581864 CGGTCTGGTCCGATCTTAGACCGGGAATGAACTTCATATGTTTAGATTGGGAATGAACTTCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * * *
4581929 GCCTCAGTCAACCAACGAAACGAGCTTACAGGTGCTCAGTCGGCC-AGAGGGGTGAGATGCAG-A
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGGGGCGGGATGC-GCA
* * ** * * * * ** *
4581992 AGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCTGG
129 AGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGG
**
4582057 T-TCGATCTTAGACT-GGAACAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
194 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-
* * * ** * * * * *
4582120 GAGCGAGCAGGCACTACGTCGGCCAGAGAGACGGGACACGCAAGTCATGGAACAATAGGGTGATA
257 G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
4582185 GGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTGCCATTTTTGTGGGTTGTAAATTCAT
321 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
4582250 ACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCATTTTCTATTTTTCATG
386 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * ** * *
4582315 ATTTTCAAAATTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAA
451 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
* * * *
4582380 CTTGGTAGACATGATCCTTGTATTTTTGTAGGAATGCAC-AAAAAATTCAGCCAAAAACTCGAAG
516 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * * *
4582444 TGTACAAGATTTTGTGAGCACTTGAAAAAAGTGTCCCCATTTCAGATACTTCAATGGCTATTGGC
581 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
4582509 AGTAAACCTGTAAAATCTCAAATGCACTTTGAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
646 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** *
4582574 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACGTCATGTGCGCACACCCCCCCGGC
711 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGC
** * * * * ** **
4582639 CCCCTTGATCGTCAGAACCCCAATGCTGCCGGTCAGGTTCTCCAGCGATGCTCCGATGATGGTGC
776 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGC
** * * * * *
4582704 CCCGACGAAGAAAAATATGGCACCAGCACATGCCTGGGCCCAGTATGTGCTACCGGAACCCT
841 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
*
4582766 CGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC-----CT---AA-G---T-C--A-
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4582815 ACC--A-T-----TA--AAACGAGCGTGCGAGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGGGGCGGGATGCGCAAG
* * * * * * * *
4582870 CCGGGGATCGGCCGGGTCTCCCTCTGCATGCTACCAATCCTGCTACCACAAACCTTGATCCAGTC
131 CTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC-TACC---CT-CAGTC
* * * * * * * **
4582935 TGGTCCGATCTTAGAATGGGAATGAATTCTGTATGCCTAAGCCAACCAACG-AATGAAGCGGAAG
191 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGCGGGCG
* *
4582999 GGCAGGCGGGCGGACACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
255 GG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * **
4583064 GTTGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
318 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* ** *
4583129 CACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTTGTTTTCTATTTTTC
383 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
4583194 ATGATTTTCGAAACATTTTGCGGTTCGCGATTTTTTGAAATTTTTTCGGAAGGAGTTTT-GCCCC
448 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
** * *
4583258 AAACTTTTTAGACGTGA-CACTTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTC
513 AAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
4583322 GAAGCGTACAAGATGTTGTCACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
577 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
4583387 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAG
642 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * **
4583452 GGATAGGGGACCAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACACCCCCA
707 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC-
* * ** * * * * * * * *
4583517 CCGGCACCCTCGATCATCGAAACCCCAACGCCGTTGGTCAGGTTCTCCGACGTTGCTCTGACGAT
771 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGAT
* * *
4583582 GGTGCCCCGACGAAGAAAAA-GACGGCACTAGCACATGCCTGAGCCCAGCATGTGCTGGCGCAAC
836 GGTGCCCCGACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
4583646 CCT
900 CCT
* * * *
4583649 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----CT--GAGTCAAC-CC--A-
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
4583703 ---T--G--AA---A--AAA--A-CGTACGGGTGCTCAGCCGGCCAGAA-GGGCGGG-TGACGTA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAAGGGGCGGGATG-CGCA
* * * * *
4583751 AG-TCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCTG-TCCTGCTGCC-ATAACCCTCAGTT
129 AGCT-GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-GATCCTGCTACCGCT-ACCCTCAGTC
** * *
4583813 CTATCTGATCTTAG-CTGGGAATGAACTCGGTATGCCTAAGCTAACCGACGAAACGAGCGGGCAG
191 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* * * **
4583877 GCGGGCGGGTGGGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAATGG
255 G-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
4583942 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
319 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
4584007 ATACTATGGTCCCTTAAGCCCTT-ACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTC
384 ATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
4584071 ACGATTTTCGAAACATTTTGCGGTTCGGGATTTTTTGAAATTTTTTTGAAAGGAGTTTT-GCCCC
448 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
* *
4584135 ATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
513 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
4584200 AACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
578 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
4584265 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGG
643 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
4584330 GCTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT
708 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC-
* * *
4584395 CGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA-G--CT-T-----T--TCCGGCGATT
772 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATG
* * **
4584449 ATGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCC
837 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
4584514 T
902 T
* * * * *
4584515 CGGTCCAGTCCGCTCTTAGACCGGGAATGAACTCCGTATGCTTAGACTAGGATTGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
4584580 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGGGATGCACAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGGGGCGGGATGCGCAA
* * * * * * * * * * *
4584644 -ATCGGGGATCGACCGGGTACCCCTCTGCATGCTACCGATGCTACTGCCACAACCCTCAGTCCAG
130 GCT-GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGG
* * * * *
4584708 TCTAATCTTAGACTGGGAATGAACTTCGTATTCCTAAGCCAACCGACGAAAAGAGTGGGC--GGG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGG
* * *
4584771 CGGGCGGGCACTACCCCGGCCAGAGAGACGTGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
4584836 GGGTTTAGGCTCATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACT
324 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
4584901 ATGGTCCCTTAAGCCTTCACTTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATT
389 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
4584966 TTCGAAACATTTTGCGGTTCGGGATTTTTTGAAATTTTTTTGAAAGGAGTTTT-GCCCCAAACTT
454 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* *
4585030 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGT
519 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
4585095 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
584 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
4585160 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
649 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
4585225 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTATATCATGTGCGCACAACCCCTCCGG-CC
714 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAC-ACCCCCCCGGCCC
* * * * ** * *
4585289 CCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCTCCGATGATGGTGTCT
778 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCC
* * * * *
4585354 C-A-GTAAAGAAAAATACGGCACCAGCACATGCGCGAGCCCAGTATGTGCTGTCACAACCCT
843 CGACG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
** * * * *
4585414 CAATCCAGTCTGATCTTAGACTGAGATTGAACTCC----G--TAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
4585473 GCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGGGATGCACAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGGGGCGGGATGCGCAA
* * * ** * **
4585537 GCCGAGGATCGGCTGGGTCCCCCTCTGCAAGCTCCCGATCCTGCTACCG-TAACCCTCAG-CTTG
130 GCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCT-ACCCTCAGTCCGG
* * **
4585600 TCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCGAACTAACGAAACGA----------G
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGG
* * * * *
4585655 CGGGCGGGCACTACGCCGGGCAGAGAGACAGGATGTGCAAACCGTAGATCGATAGGGTGGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
4585720 GGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
324 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
4585785 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATT
389 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
4585850 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
454 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* * * *
4585915 GGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAACATTCAGCTAAAAAGTCGAAGTGT
519 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
4585980 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGC
584 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
4586045 AAACCTGTAAAATCTTAGATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
649 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * ** * *
4586110 GGGCCAATATAAGGGCCAAGGACCACCACCCATCGTACATCATGTGTACACA-CCCCCTGGCGCC
714 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCC
* ** * * * * *
4586174 CCCGACCATCGAAACCCCAATTCCGTCGGTCAGGTTCT-TCGGTGATGCTCCAGCGATGGTGGCC
779 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGCGATGCTCCGGCGATGGTGCCC
* * ***
4586238 CGACGAAGAAAAATGC-GAACCAGCACATGCCCAAGCCCAGCATGTGCTTTGGCAACCCT
843 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
4586297 CGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
4586362 GCCTAAGTCAACCAATGAAACGAGTGTGCGGGCGCTCAACCGGCC-AGAGGGGCGAGATGTGCAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGGGGCGGGATGCGCAA
* * * * *
4586426 G-TCGGGGATCGACCGAGTCCCCCTCTGCATGCTGCCGATCCTGCTACTGCAACCCTCAGTCCGG
130 GCT-GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGG
* *
4586490 TCCT-ATCTTAGACT-GGAATGAACTCCGTATGCCTAACCCAACCGACGAAATGA----------
194 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGG
* *
4586543 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGCCATGGATCGATAGGGTGGTAGG
258 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
4586608 TGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTCAATTCATAC
323 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
4586673 AATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * **
4586738 CTTCAAAACTTTTTGCGGTTC-AGGATTTTTCAAAATTTTTTTGGAAGGCTTTTTGGCCCCAAAC
453 TTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* *
4586802 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGT
517 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4586867 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGGA
582 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
4586932 GGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGAGAGATA
647 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4586997 GGGGGCCAATATAAAGGCCAAGTACCGGCACCCATTGTACATCATGTGCGCACACCCCCGCCGGC
712 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC-CCGGC
* * * *
4587062 CCCCCCGATCGTCGGAACCCTAATGCCATCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGC
776 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGC
* * *
4587127 CCCGACGAAGAAAAATGTGGCAGCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
841 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
4587189 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * **
4587254 GCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGCCGGAGGGGTAGGATGCGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGGGGCGGGATGCGCAAG
* * * * * **
4587319 TTGGGGATCGGGCGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCG-TAACCCTTGGTCCGGT
131 CTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCT-ACCCTCAGTCCGGT
* *
4587383 CTGATCTTACACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCTGGTGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GG
* *
4587447 GCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGG
258 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
4587512 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
323 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * * *
4587577 AATGGTCCCTTAAGCATGCCCGTGAAGTTTCTTGGCAAGTCGACTTGTTTTCTATTTTTCACGAT
388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
4587642 TTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTCGCCCCAAACT
453 TTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACT
* * * *
4587707 TGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACTGGAAGTG
518 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
4587772 TACATGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAG
583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
4587837 CAAACCTGTAAAATCT-AAAGTGCTCTTTAAGGGAGTGTTAGTTCTCGAGGTTTGATGAGGGATA
648 CAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4587901 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGAGTGCACATCCCCCCC-GA
712 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCCGGC
* * *
4587965 CCCCCCGATCACCGGAACCCCAATGCCG-CTAGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTG
776 CCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
** * *
4588029 CCCCGATAAAGAAAAATGTGGCACCAGCACATGCGCGAGCCCAGCATGTGCTGCCGCAACCCT
840 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
*
4588092 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACAT-CGTA
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCGTA
* * * *
4588156 TGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAA-AGGCGGGATGCGCA
65 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAAGGGGCGGGATGCGCA
* * * * * *
4588220 AGCCGGGGATCGGCTGGGTCCCCATCTGCGTGCTTCCAATCCTGCTCCCG-TAGCCCTCAGTCCG
129 AGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTA-CCCTCAGTCCG
*
4588284 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
193 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-
* * * * *
4588349 GGGCAGACGGGTGCACATTACGCCAGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGT
256 GGGCGGGC-GG-GCAC--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
4588414 GGTAGGTGGGTTTAGGCACAGCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCTTGTAAAT
317 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * *
4588479 TCATACAATGGTCCTTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTCTT
382 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * * *
4588544 CATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGGCC
447 CACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
* * * *
4588609 CAAACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGAAAAAAAAAATTCAGCTAAAAACT-
512 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * **
4588673 GAAAGTGTACAAGATTTTGTGACAATTT-AAAAAGGTGTCCCCATAACAGACACTTTAATGGCTA
577 G-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
4588737 CTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
641 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
4588802 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATGATGTGCGCACACCCCC
706 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC
* * * * * * *
4588867 CTGGCCCCCCCGATCACCGAAACCCCAATTCTGTCGGTCAGGTTCT-TCGGCAATGCTCCGGTGA
771 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGCGATGCTCCGGCGA
* * * * * *
4588931 TGATGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAAC
835 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
4588996 CTT
900 CCT
* *
4588999 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** *
4589064 GCCTAGGTTAACCCACGAAATC-AGCGTGCGGGCGCTCATTCGGCC--AGAGGGCGGGATGTGCA
66 GCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGCCGAAG-GGGCGGGATGCGCA
** * * ** * * * ** **
4589126 AGCCAGGGATCGACCGGGTCCCCCTTTATGTGCTGTCGATCCTACTACCGCAACCCTTGGTCCAA
129 AGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGG
* * * * *
4589191 TCTAATTTTAGACTGGGAATGAACTCCGTATGGCTAAGCGAACCGATGAAACGAGCGGGC--GGG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGG
* * * *
4589254 TGGGCAGGCACTATGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
4589319 GGGTTTAGGCACATCTTTATATTTTTGCGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACA
324 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
4589384 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCATGATT
389 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * * * *
4589449 TTTGAAACTTTTTACGGTTTGAAATTTTTTAAAA-TTTTTTCAGCAGCAGTTTTGGCTCCAAACT
454 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACT
* *
4589513 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTG
518 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4589578 TACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * **
4589643 GAAACCTGCAAAATCTCAAATGCTCTTTAAGGCGGTGTGAATTCTCGAGGTTTGATGACTGATAG
648 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * **
4589708 GGGCCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGTGCACCCCCCCGGCCC
713 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCC
* *
4589773 CCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCC
778 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCC
* *
4589838 CG-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCGCAACCCT
843 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
4589897 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4589962 GCCTAGGTCAACCCACAAAACGAACGTGCGGGCGCTCAGCCAGCCGAAGGGGCGGGATACGCAAG
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGGGGCGGGATGCGCAAG
* * * * * *
4590027 CTGGGGATCGGTCGGGTTCCCCCTCTGTGTGTTGTCGATCCTGCTGCCGCTACCCTCGGTCCGGT
131 CTGGGGATCGGCCGGG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGGT
* * * *
4590092 CCGATCTTACACT-AGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGTGG
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GG
* *
4590156 GCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
258 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
4590221 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
323 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
4590286 AATGGTCCCTTAAGCATGCCCGTGAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTCACGAT
388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
4590351 TTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
453 TTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACT
* * * * *
4590416 TAGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACACGAAGTG
518 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4590481 TACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAG
583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
4590546 CAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
648 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * ** * *
4590611 GGGGCCAATATAAGGGCCAAGAACCAGCACCCCTTGGACATCATGTGCGTGCAGCCCCCCTGACC
713 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCCGGCC
* * *
4590676 CCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
777 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCC
* * * *
4590741 CCGACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCACCATGTGCTTCCGCAACCCT
842 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
4590802 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
4590867 GCCTAGGTCAACCAACGAAACGAGCGTACGGGCACTCAGCCAGCCGAAGGGGCAGGGATGCGCAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGGGGC-GGGATGCGCAA
* * * *
4590932 GCTGGGGATCGGTCGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCGCTACCCTC-GATCCGG
130 GCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAG-TCCGG
* *
4590996 TCTGATCTTACACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGTG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G
4591060 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
257 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
4591125 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
322 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * * *
4591190 CAATGGTCCCTTAAGCATGCCCGTGAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTCATGA
387 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
4591255 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTCGAAAGGACTTTTGGCCCCAAAC
452 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* * * * *
4591319 TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACACGAAAT
517 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
4591384 GTACAAGGTTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTTCTGGCA
582 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4591449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATA
647 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4591514 GGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGTACATCATGAGCGCACATCCCCCCCGAC
712 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCCGGC
* * * *
4591579 CCCCCCGATCGCCGGAACCCCAATGCCG-CTAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
776 CCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
* * * * *
4591643 CCCCGATGAGGAAAAATGTGGCACCAGCACATGCGCGAGCCCAACATGTGCTGCCGCAACCCT
840 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
4591706 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGAATGAACACCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * * * * * *
4591771 GCCTAAGTCAACCCATAAAACGAGCATGCGGGTGCTCAACCGGCCAGAA-AGGCAGGACGCGCAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAAGGGGCGGGATGCGCAA
* *
4591835 GCTGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTCCCGC-AGCCCTCAGTCCGG
130 GCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTA-CCCTCAGTCCGG
** * * *
4591899 TCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAGGAAACGAGTGGGCGGGCG
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G
*
4591964 GGCGGGCGGGTGCGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
257 GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
4592029 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
318 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
4592094 CATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
383 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * * * **
4592159 ACGATTTTCAAAACATTTTACGGTTCGGGATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGGGCC
448 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
* *
4592224 AAACTAGGTAGACATGATCCTTG-----TTGTTGGCATGCGA-AAAAAAATTCAGCTAAAAACTC
513 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTC
* * * **
4592283 AAAGTGTACAAGATTTTGTGACAATTT-AAAAATGTGTCCCCATACCAGACACTTTAATGGCTAC
577 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * **
4592347 TGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACCTTTGATGAG
642 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
4592412 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACACCCCTC
707 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC
* * * * * * * * *
4592477 GGGCCCCCCCGATCACCGAAACCCCAATTCTGTCGATCAGGTTCTTTGGCAATGCTCCGGTGATG
772 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATG
* * * * * * *
4592542 GTGCCCCGATGAAGAAAAATACGGTATCAGCACATGCCCTAGCCCAGCATGTGTTGTCGCAACCC
837 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
4592607 T
902 T
* * *
4592608 CGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
1 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * ** * *
4592673 GCCTAGGTCAACCCACGAAATGAGCGTGTGGGCGCTCATTCGGCC-AGAGGGGCGAGATACGCAA
66 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGGGGCGGGATGCGCAA
* * * * * * * * ** **
4592737 GCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGTCAATCCTACTACCGCAACCCTTGGTCCAAT
130 GCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGGT
* * *
4592802 CTAATTTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC--GGGC
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGC
* ** *
4592864 GGGCAGGCACTATACCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
260 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
4592929 GGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAA
325 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
4592994 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
390 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * *
4593059 TTAAAACTTTTTGCAGTTCGGGATTTTTTAAAA-TTGTTTAAGAAGGAGTTTTGACCCCAAACTT
455 TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTT
* *
4593123 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGT
519 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
4593188 ACAAGATTTTGTGACCATTTGAGAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGG
584 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
4593253 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
649 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
4593318 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACA-CCCCCTGGCCCC
714 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCC
* * * * * *
4593382 CCCGATCGTCAGAACCCCAATGCCGCCGATCAGGTTCT-TCGACGATGCTCTGGCGATGGTGCCC
779 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGCGATGCTCCGGCGATGGTGCCC
* * * *
4593446 CGATGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGCATGTGCTG
843 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
4593496 TCTAACCCTC
Statistics
Matches: 9448, Mismatches: 1096, Indels: 376
0.87 0.10 0.03
Matches are distributed among these distances:
866 102 0.01
868 1 0.00
871 2 0.00
873 6 0.00
874 4 0.00
875 1 0.00
876 80 0.01
877 543 0.06
878 25 0.00
879 2 0.00
880 3 0.00
881 59 0.01
882 454 0.05
883 290 0.03
884 298 0.03
885 241 0.03
886 7 0.00
887 3 0.00
888 39 0.00
889 1110 0.12
890 25 0.00
891 84 0.01
892 384 0.04
893 414 0.04
894 3 0.00
895 1 0.00
897 20 0.00
898 601 0.06
899 517 0.05
900 56 0.01
901 44 0.00
902 318 0.03
903 967 0.10
904 1178 0.12
905 514 0.05
906 152 0.02
907 353 0.04
908 507 0.05
909 40 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGGGGCGGGATGCGCAAG
CTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCTACCCTCAGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCG
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
CGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCC
CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
Found at i:4590852 original size:26 final size:26
Alignment explanation
Indices: 4590816--4590868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4590806 CTGGTCTGAT
*
4590816 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
4590842 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
4590868 C
1 C
4590869 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4592660 original size:26 final size:26
Alignment explanation
Indices: 4592622--4592674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4592612 CCGGTCTGAT
4592622 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4592648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4592674 C
1 C
4592675 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4594166 original size:678 final size:679
Alignment explanation
Indices: 4592881--4594190 Score: 2119
Period size: 678 Copynumber: 1.9 Consensus size: 679
4592871 CACTATACCG
*
4592881 GCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
4592946 ATATTTTTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTC
* *
4593011 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGT
131 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGT
*
4593076 TCGGGATTTTTTAAAATTGTTTAAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGT
196 TCGAGATTTTTTAAAATTGTTTAAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGT
*
4593141 ATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
* * *
4593206 TTGAGAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTATAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
* *
4593271 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCGCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCA
** *
4593336 AGTACCAACACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCAGAACCCCA
456 AGTACCAACACCCATCGCACATCATGTGTGCACACCCCCCCGCCCCCCCGATCGACAGAACCCCA
* * * *
4593401 ATGCCGCCGATCAGGTTCTTCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCAGCA
521 AGGCCGCCGATCAGGTTCTTCGACAATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGCAGCA
**
4593466 CCAACACATGCTCGAGCCCAGCATGTGCTGTC-TAACCCTCAGTCCGATCCAACTGATGAAATGA
586 CCAACACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGATCCAACTGATGAAATGA
4593530 GTGGGTGTGAGCAGGCGGGCACTACGTCA
651 GTGGGTGTGAGCAGGCGGGCACTACGTCA
*
4593559 GCCAGAGAGACGGGATGCGCAAGTCGTGGATC-ACTAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
4593623 CATATTTCTACGTGCCAATGCCATTTTTAAGGCTTGTAATTTCATACAATGGCCCCTTAAGCCTT
65 CATATTTCTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTT
* ** *
4593688 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGTAACTTTTTACGG
130 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACAG
** *
4593753 TTCGAGATTTTTTAAAATAT-TTTCGGAAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTT
195 TTCGAGATTTTTTAAAAT-TGTTTAAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTT
* *
4593816 GTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTGCAAGATTTTTGTGAC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA-TTTTGTGAC
*
4593881 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
323 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
* **
4593946 CAAATGCGCTTTAAGGGGGTGTGAGTTTTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGG
388 CAAATGCGCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGG
* * ** * *
4594011 CCAAGTACCAGCACCCATCGCATATCATGTGCT-CACACCCCCCCGCCCCTTCTATCGACGGAAC
453 CCAAGTACCAACACCCATCGCACATCATGTG-TGCACACCCCCCCGCCCCCCCGATCGACAGAAC
* *
4594075 CCCAAGGCCGCCGATCAGGTTCTTCGGCAATGCTCCGGCAATGGTGCCCCGATGAATAAAAATGC
517 CCCAAGGCCGCCGATCAGGTTCTTCGACAATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGC
* *
4594140 GGCACCAGCACATGC-CTGAGCCCAGCATGTGCTACCGTAACCCTCAGTCCG
582 AGCACCAACACATGCTC-GAGCCCAGCATGTGCTACCGTAACCCTCAGTCCG
4594191 GTTCGATCTT
Statistics
Matches: 580, Mismatches: 46, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
677 79 0.14
678 485 0.84
679 16 0.03
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (679 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGT
TCGAGATTTTTTAAAATTGTTTAAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
ATGCGCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAACACCCATCGCACATCATGTGTGCACACCCCCCCGCCCCCCCGATCGACAGAACCCCA
AGGCCGCCGATCAGGTTCTTCGACAATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGCAGCA
CCAACACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGATCCAACTGATGAAATGA
GTGGGTGTGAGCAGGCGGGCACTACGTCA
Found at i:4594234 original size:26 final size:26
Alignment explanation
Indices: 4594198--4594250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4594188 CCGGTTCGAT
4594198 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4594224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4594250 C
1 C
4594251 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4594700 original size:26 final size:25
Alignment explanation
Indices: 4594671--4594749 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
4594661 CCCGTCCAAT
4594671 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
4594697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
*
4594723 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
4594749 C
1 C
4594750 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:4595650 original size:26 final size:26
Alignment explanation
Indices: 4595599--4595651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4595589 TCGGTCCGAT
*
4595599 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4595625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4595651 C
1 C
4595652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4596529 original size:26 final size:26
Alignment explanation
Indices: 4596500--4596552 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4596490 CTGGTCCGAT
4596500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4596526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4596552 C
1 C
4596553 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4596773 original size:901 final size:902
Alignment explanation
Indices: 4594391--4601563 Score: 8211
Period size: 877 Copynumber: 8.0 Consensus size: 902
4594381 ATGTGTGCAT
* * *
4594391 GATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAAC
1 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
4594456 CTGCAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* *
4594521 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTACGCACACCCCCCCGGCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGA
* * *
4594586 TCGCTGGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC---G-T-------TGGTG-CCC--C-A
195 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* ** * * * * * * ** **
4594636 AG-CATGTG-A-TACCA-CA-A-CCCTCG-GTCC--C--GTCCAATCTTAGA--CT-GTGAATGA
260 AGAAAAATGCAGCACCAGCACATGCC-CGAGCCCAGCATGTGCTACCGCA-ACCCTCG-GTCTG-
* * *
4594687 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCT
321 -GTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * *
4594752 AAGTCAACCCCCGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGGGGCGGGCTGCGCAAGTCGG
383 AAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * * * * *
4594817 GGATCGATCGGGTCCCCCTCTGTGTCCTG-TCGATCTTGCTGCCGTAACCCTTC-ATCCAGTCTG
448 GGATCGGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCC-TCGGTCCGGTCTG
* * * * *
4594880 ATGTTAGACTTGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGACGG-G--CGG
512 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAACGG
* * * *
4594942 GCAGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGG
577 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
4595007 TTTAAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAT
642 TTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
4595072 GGTCCCTTAAGCCTTCACGAGCAGTTTCATGGCAAGACAACTCGTTCTT-TATTTTTCACGATTT
706 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT-TTCTATTTTTCACGATTT
** * * * *
4595136 TTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGAATTTTTGGCCCCAAACTTG
770 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
4595201 GTAGACGTGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
835 GTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
4595266 ACAA
899 ACAA
* *
4595270 CATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
4595335 CTGTAAAATCGCAAATTC-CTTTTAAAGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGA
66 CTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
4595399 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGTCCCCCC
130 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCC
* * * * *
4595464 GATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-AGCGATCGTGCCCCGA
193 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGA
** * * *
4595528 CGAAGAAAAATG-AGGCACCAGCACATGCTTGAGCCCAGCATGTGCTATCACAACCCGCGGT-TC
257 CGAAGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT-
* *
4595591 GGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
320 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
4595656 GTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATTCGTAAGCCGGGG
385 GTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *
4595721 ATCAGTCGGGTCCCCCTCTACGTGATGC-CGATCCTACTGCTGTAACCCTCGGTCCGATCTGATC
450 ATCGGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* ** * * * * *
4595785 TTAGACTGCGAATGAACTTTGTATGCCTAAGCCAACTGACAAAATGAGCAGGCGGGCGAGCGGGC
515 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAACGGGC
** ** * * * *
4595850 GAACACTACGCTAGCTAGAGAGACAGGATGCGCAAGCCATGGATCGCTGGGGTGGTAGGTGGGTT
579 GGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
4595915 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGT
644 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
4595980 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGA
709 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
4596045 AACTTTTTGCGATTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
774 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
4596110 ACGTGATCCTTGTATTTTTTTTGGCAAGCATAAAAAAATTCAGCTAAAAACTCCAAATGTACAA
839 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4596174 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
4596239 CTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* *
4596304 CAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCACCGGCCCCCCGAT
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * * * *
4596368 CACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGCAATGGTGGCCCGATGAA
196 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * *
4596433 GAAAAATGCAGCAACAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
261 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
4596498 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
326 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
4596563 CCACGAAACGAGCGTTAGGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
391 CCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * ** * **
4596628 CGTGTCCCCCTCTATGTGCT-CTCGATCCTGCTGTTGCAGCCCTCAATCCGGTCTGATCTTAGAC
456 CGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* * * *
4596692 TGGAAATGAAGTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCCGAACGGGCGGGTAC
521 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGAACGGGCGGGCAC
* * * * *
4596757 TACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCA
585 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
***
4596822 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
650 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
4596887 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
715 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
**
4596952 TTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCC-AA------AGACGTGA
780 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
4597010 TCCTTGTATTTTTTTTGGCATGCACAAAAAAAATACAAGGATCACGTCTTTGGGGCCAAAACTCC
845 TCCTTGTATTTTTTTTGGCATGCAC-AAAAAAAT-------TCA-G-C--T-----AAAAACT-C
*
4597075 TTTGCACAAAAAAATTCAGCTAAAAACTCGAA
892 ---G--------AAGT--G-T----A--C-AA
* *
4597107 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
1 --G----A-TTTT-GTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * **
4597172 CAGCAAAACTGTCAAATCTCAAATTC-CTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
58 CAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* *
4597236 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCACACATCATGTGCGCACACCCCCCGG
122 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
** * * *
4597301 CCCCCCCGATCGCCGGAAAGCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAAGGTG
187 -CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * *
4597366 CCCCGACGAAGAAAAATG-AGGCACCAGCACATGCCTGAGCCCAGTATGTCCTACCGTAACCCTC
251 CCCCGACGAAGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* * * *
4597430 GAT-TCGGTCCGTTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGAAATGAACTCCGTAT
315 GGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * * *
4597494 GCCTAAGTTAACCCGTGAAACGAGCGTGCGGGCGGTCTGCCGGCCAGAGGGGCGGGATGCGCAAG
379 GCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
** * * * * * * * *
4597559 TTGGGGATCAGTCGGATCCCCCTCTACATGCTGCT-GATCCTGCTACCGTAACCCTCAGTTCAGT
444 CCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGT
* *
4597623 -TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGG-GC
509 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCG-
4597686 AAGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC-ACTAGGGTGGT
572 AA-CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA-TAGGGTGGT
* * *
4597750 AGGCGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAAGGCTTGTAAATTCA
635 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
4597815 TACAATGGCCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTTTTATTTTTCAC
700 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
4597880 GATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAAATTTTTT-GGAAGGATTTTTGGCCCCA
765 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
4597944 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTC-A
829 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
4598008 TAGTGTACAA
894 -AGTGTACAA
* *
4598018 GATTTTATGGCCATTTGAAAAAAGTGTCCCCATATT-AGACACTTTAATGGCTCCTGGCAGCAAA
1 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4598082 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGACGGATAGGGTG
65 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
4598147 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCG
130 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CG
* * *
4598212 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGATG
194 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
*** * * * *
4598277 AAGAAAAATATGGCTCCAGCACATGCCCGAGCCTAGCATGTGCTATCGTAA-CC-C--TC--G--
259 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
* *
4598334 -G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * *
4598381 ACCCACGAAACGAGCGT-ACGGTTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATC
389 ACCCACGAAACGAGCGTGA-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * ** * *
4598445 AGTTGGGTCCCATTCTACGTGCTG-TCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
453 GGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
** * * ** * **
4598509 GACTACGAATGAACTCCATAAGCCTAAGCCAACCGATTAAACGAGCGGACAGGCGGGCGGGCGGG
518 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAACGGGCGGG
* *
4598574 CACTACGCCCTGCCAGAGAGACAGGATGCGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
582 CACTACG-CCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** * * ** *
4598639 GGTGCATCTTCATATTTCTACGTGCCAAACCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCT
646 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
4598703 CTTAAGCCTTCACGTGAAATTTGATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTCGAAA
711 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * * *
4598768 CATTTTACGGTTGGGGATTTTTTAAAATTTTTTTGAAAGAAGTTTTAGCCCCAGAA-TTGGTAGA
776 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA-AACTTGGTAGA
* * * ** *
4598832 TGTGGTCCTCGTATTTTTTTTTCCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAA
840 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
4598895 CATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGTCACTTTAATGGCTACTGGCTGCAAAC
1 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4598960 CTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* * * * *
4599025 CAATATAAAGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCAAACCTCCTCGCCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGA
** * * * ** *
4599090 TCATCGGAACCTCAATGCCGCCCGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGA-G
195 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GACG
** * *** * *
4599154 AAGAAAAATGTGGCACCAGCACAT-CCCGAGCCTAGCATGTGCTGTTGTAACCCTCGGT-TCAGT
259 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT-GGT
4599217 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAGCTCTGTATGCTTAGACT
323 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG----GA-------ATG---A-ACT
* *
4599282 GGAAAAGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGT-ACGGGCGCTCAGTCGGCCAG
373 ---------C-C-GTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAGCCGGCCAG
* * * * * * * * *
4599346 AGGGGTGGGATGAGCAAGCCGGAGATCGGTTGGGTCCCCCTTTGCATGCTGC-CGATCCTACTAC
426 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGC
* * * * *
4599410 CGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCCAACCGACA
491 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
4599475 AAACGAGCGAGAGGCCGGGA-GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCAT
556 AAACGAGCGGGCGG-C-GAACGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* **
4599539 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTT
619 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
4599604 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
684 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** *
4599669 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGCCTAGGGATTTTTTAAAATTTTTTCGGAA
749 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
4599734 TGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAAAT
814 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAAT
4599799 TCAGCTAAAAACTCGAAGTGTACAA
878 TCAGCTAAAAACTCGAAGTGTACAA
*
4599824 GATTTTGTGACCATTTGAAAAAAGTGTCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
1 GATTTTGTGGCCATTTGAAAAAAGTGT-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* **
4599889 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCAAGGTTTGATGAGGGATAGGGGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* * *
4599954 CCAATATAAGGGCTAAGTATCGGCACCCATCGCACATCATGTGCGCACACCCCACC--CCCGATC
130 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC---C
4600017 TCCAGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
191 -CC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
** * * * * *
4600082 CGGTGAAGAAAAATACCGCACC-GACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGT
254 CGACGAAGAAAAATGCAGCACCAG-CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
* * * * * *
4600146 CCGATCTGATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
318 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * *
4600211 AAGTCAAACCATAAAATGAGCGTGCA-GGCGCTCAGTCGGCCAAAGGGGCGGGATGCG-ACAGCC
383 AAGTCAACCCACGAAACGAGCGTG-AGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCC
* * * * * *
4600274 GGGGATTGGTCGGGTCCCCCTCTGCGTGCT-ATCGATCTTGCTGCCGCAACCCTTGGTTCGGTCT
446 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
*
4600338 GATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAACGA---------G--CG
511 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAACG
* *
4600392 GGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
576 GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
4600457 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAAT
641 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
**
4600522 GGTCTTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
706 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
4600587 TAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCACAAACTTGG
771 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
4600652 TAGAAGTGATCCCTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAAATCGAAGCGTAC
836 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
4600717 AA
901 AA
* * *
4600719 GATTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAA
1 GA-TTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4600784 CCTATAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
*
4600849 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCG
130 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * *
4600914 ATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGCCGATGCTTCGACGATGGTGCCCCGACG
194 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
*
4600979 AAGAAAAATGC-G-----G--CA---CC-A---C-GCA------A-C-C-A---TCGGTCCGGTC
259 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
* * * * * *
4601016 TGATCTTAGACTGGGAATGAACTCCATATGGTTACACTAGGAATGAACTTCGTATGCCTAAGTCA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
4601081 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATTG
389 ACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * * * * * * *
4601146 GCCGGGTTCGCCTTTGCGAGCTGC-CAATCCTTCTACCACAACCCTCAGTCTGGTCTGATGTTAG
454 GTCGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * ** * *
4601210 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAGGAACGGGCGGGCGGGCGGGTGGGT
519 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAACGGGCGGGC
* * * * *
4601275 ACTACGTCGACCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * *
4601340 TACATCTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTTTAAATTCATGCAATGGTCTCT
648 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
4601405 TAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACT
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*** * *
4601470 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTCATCCCCAAACATGGTAGATGT
778 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
4601535 GATCCTTGTATTTTTTTTGGCATGTACAA
843 GATCCTTGTATTTTTTTTGGCATGCACAA
4601564 GTGGGCGGGC
Statistics
Matches: 5420, Mismatches: 651, Indels: 449
0.83 0.10 0.07
Matches are distributed among these distances:
864 209 0.04
865 1 0.00
867 1 0.00
868 1 0.00
869 1 0.00
874 1 0.00
876 310 0.06
877 595 0.11
878 122 0.02
879 175 0.03
880 44 0.01
881 3 0.00
882 1 0.00
883 1 0.00
884 3 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
891 6 0.00
892 74 0.01
893 4 0.00
894 35 0.01
895 190 0.04
896 299 0.06
897 5 0.00
898 5 0.00
899 4 0.00
900 11 0.00
901 565 0.10
902 227 0.04
903 270 0.05
904 222 0.04
905 206 0.04
906 65 0.01
907 2 0.00
908 155 0.03
909 2 0.00
910 2 0.00
911 8 0.00
912 2 0.00
913 3 0.00
914 1 0.00
916 1 0.00
917 3 0.00
918 1 0.00
919 4 0.00
920 2 0.00
921 2 0.00
923 6 0.00
925 1 0.00
926 2 0.00
927 107 0.02
928 313 0.06
929 61 0.01
930 145 0.03
931 1 0.00
932 6 0.00
933 82 0.02
934 66 0.01
935 1 0.00
938 1 0.00
939 1 0.00
940 5 0.00
941 162 0.03
942 15 0.00
943 543 0.10
944 14 0.00
949 8 0.00
950 31 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
CGGGTCCCCCTCTACGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAACGGGCGGGCACT
ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
Found at i:4597483 original size:26 final size:26
Alignment explanation
Indices: 4597443--4597495 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4597433 TCGGTCCGTT
* *
4597443 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4597469 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4597495 C
1 C
4597496 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:4599251 original size:26 final size:26
Alignment explanation
Indices: 4599222--4599300 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
4599212 TCAGTCCGAT
* *
4599222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
4599248 CTTAGACTGGAAATGAGCTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
4599274 CTTAGACTGGAAAAGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
4599300 C
1 C
4599301 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:4600194 original size:26 final size:26
Alignment explanation
Indices: 4600156--4600208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4600146 CCGATCTGAT
4600156 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
4600182 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
4600208 C
1 C
4600209 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:4602262 original size:26 final size:26
Alignment explanation
Indices: 4602233--4602285 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4602223 CCGGTCCGAC
*
4602233 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4602259 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4602285 C
1 C
4602286 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4603166 original size:26 final size:26
Alignment explanation
Indices: 4603130--4603182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4603120 CTGGTCGGAT
4603130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4603156 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4603182 C
1 C
4603183 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4604975 original size:26 final size:26
Alignment explanation
Indices: 4604939--4604991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4604929 CTGGTCTGAT
4604939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4604965 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4604991 C
1 C
4604992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4605467 original size:893 final size:891
Alignment explanation
Indices: 4601580--4608320 Score: 8798
Period size: 893 Copynumber: 7.5 Consensus size: 891
4601570 GGGCGGGCGC
* *
4601580 GCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
4601645 TTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * ** *
4601710 G-CCCTTAAGCCTACACATGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
* * **
4601774 GAAACTTTTTGCGGTTCTGGATTTTTTAAAA-TTTTTTAAAAGGAATTTTGGCCCCAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
4601838 AGACGTGATCAC-TGTATTTTTGTTGGCATGCATAAAAAAATTCAGAC-AAAAACTCGAAGTGTA
261 AGACGTGATC-CTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG-CTAAAAACTCGAAGTGTA
* * *
4601901 CAAGATTTTGTGATCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
4601966 AAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
4602031 GACCAATATAAGGGCCAAGTACCATG-ACCCATCGCACTTCATGTGCGCACACCCCC-CTGGCCA
454 GGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCATGTGCGCACACCCCCTC-GGCC-
* * ** *
4602094 CCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATATTCCAATGATGGTGCCC
516 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * *
4602159 CGACGAAGAAAAATGCGGCACGAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
4602224 CGGTCCGACCTTAGATTGGGAATGAATTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTA
646 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
4602289 ACTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGTAAGCCGGG
711 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
4602354 GATCGGTCGAGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTCTGATCTGATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATC
*
4602419 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
4602470 GCGGGTGGGCATTACGCC-GCCAGACAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
4602534 TGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
62 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
4602599 AATGGTCCCTTAAGCCTCCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGAT
127 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAT
* * * * * *
4602664 TTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTCT-CAAGGATTTTTGGCCCAAAAC
192 TTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGGAAGGAATTTTGGCCCCAAAC
** *
4602728 TTGGTAGACGTGATCCTTGTATTTTTGTTACCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
256 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4602793 GTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
321 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4602858 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGAT
386 GCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
4602923 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAAGAGCGCACTCCTGCCTCGG
450 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTCGG
* * ** * ** *
4602988 CCCCCCCGATCGCCGGAACCCCAACGCCGCCAATCAAGTTCTCCGGTGATGCTCCGACGATGGTG
514 -CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTG
* * * * * *
4603053 CCCCGACGAAGAAAAATGTGGCCCCAGCACATGCCCAAGCGCAGCAAGTGCTGCTGCAACCCTCG
578 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
4603118 GTCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGC
643 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
4603183 CTAAGTCAGCCCACGAAACGAGCGTACAGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTC
708 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** * * * * * * * ** * * *
4603248 GGGGATCGGCCGTGTCCACCTCTGCGTGTTATCGATCCTACTGCTGTAATGCTTGTTCCTGTCTG
773 GGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTG
* * * *
4603313 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAATGAGCGGGCGGGCGGGTG
838 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-----CGAGC----G
4603378 G
891 G
* *
4603379 GCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4603444 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATT
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
4603509 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
* * * * * **
4603574 GAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCGAAACTTTTT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
* ** * *
4603639 CAGATGTGATCCTTGTATTTTTGTTCCCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
261 -AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
4603704 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
4603769 ACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
4603834 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATATGCGCACACCCCCACGGCCCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCC
* * * * * * *
4603899 TATCGCCGGAACCCCAATGTCACCGGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
520 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGAC
* * *
4603964 GAGGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
585 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
4604029 CCGATCTTAGACTGGGAATGAACTCTC-TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
650 CCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * ** * * * *
4604093 CAACCCACGAAATAAGTGTGCGGGCATTTAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGTGAT
714 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * * *
4604158 CGGCCGGGCCCCCCTCTACGTGCTGCTGATCCTACTACCACAACCGTCGATTCGGTCTGATCTTA
779 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTA
* **
4604223 GATTGGGAATGAACTAGGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGG
844 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-----C-GA--G-CGG
*
4604283 GCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
4604348 TTTAGGCACATCTTCATATTTCT--ATGTAACAATGCCATTTTTGTGGCTTGTAAATTCAGACAA
66 TTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
4604411 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATGATTT
129 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TT
*
4604476 TTC-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGAAATTTTGGCCCCAAACTT
193 TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTT
* * * *
4604540 AGTAGACGTGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAATTTGAAGTGT
258 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
4604605 ACAAGATTTTGTGACAATTGGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
4604670 AAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATCAGGGATAGA
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
4604735 GGGCCAATGTAAAGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCTTCGGCTC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-TCGGC-C
* * * *
4604800 CCTCGATCGTCGGAACCCCAATACCGCCTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
516 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * *
4604865 CGATGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
4604930 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
646 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
4604995 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGTGGGATGTGTAAGCCGGG
711 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * *
4605060 GATCGATCGGGCCCCCCTCTACGTGCTGCCAATCCTGCTGCTGTAACCCTCAATCCGGTCTGATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATC
* *
4605125 TTAGACTGGGAATGAAATCCATATGCCTAAGCCAACCGACGAAACGAGCGG
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
4605176 GCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGTTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * *
4605241 TTTAGGCACATCATCATATTTCTGCATGCCAATGCCACTTTTAGGGCTTGTATATTAATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
4605306 GTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
* * *
4605371 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTAATTTTGGCTCCAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
* * *
4605436 AGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTTGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4605501 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
4605566 CCTATAAAATCTCAAATGCTCTATATGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
4605631 CGAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAAACCCCCT-AGCCCCTTC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCC-CC
* * * *
4605695 GATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGAC
520 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGAC
* * * * * * **
4605760 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGAATGTGCTACCGTAACCTTCGGTCCAAT
585 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
4605825 CCGATCTTAGATTGGGAA-GAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
650 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
4605889 AACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGGGATC
715 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
4605954 AATTGGGTCCCCCTTTGTGTGCTACCGATCCTACTACTGCAACCCTCAATCCAGTCTGATCTTAG
780 GATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAG
* * *
4606019 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAATCGAGCGG
845 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * * * *
4606066 GCGGGCACTACGCCGGGCAGAGAGATGAGATGCACATGCCATGGATCGATAGGTTGGTAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4606131 TTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
4606196 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTAGTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
* * * * * * *
4606261 GAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGTAATTTTGGCTCTAGACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
* * * *
4606326 AGATGTGATCCTTTTACTTTTCTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
4606390 AGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTTAGACACTTTAATGGCGACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
4606455 CCTGTAAAATCTCAAATGCTCTATATGGGGGGGTGAGTTCTTGAGGTTTGATGACGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * * *
4606520 TGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAAACCCCAT-GGCCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCCCTCGG-CCCCC
** * * ** ** * * * *
4606584 CGATCACCGAAACCCTAATGTTGTTGGTCAGGTTTTCCGATGATGCTCCGGTGATGGTGCCCTGA
519 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
* * *
4606649 CGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
4606714 TCTGATCTTAGACTGGGAA-G-ACTCTGTATGC-TAGACTGGGCAATGAAACTCCGTATG-CTAA
649 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-AATG-AACTCCGTATGCCTAA
* * * *
4606775 GTCAACCCATGAAACAAGCATGCGGGCGCTCAGTCGGCCA-AGGGGCGGGATGCGCAAGCCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *
4606839 ATC-A-CTGGGT-CCCGTCTGTGTGCTGCC-ATCCCTGCTACCGC-A-CC-CAATCCAGTCTG-T
777 ATCGATC-GGGTCCCCCTCTGCGTGCTACCGAT-CCTACTACCGCAACCCTCGATCCGGTCTGAT
* * * *
4606896 CTTAGACTGGG-ATGAACTCCCGTATGCCCTAACCCAATCGACAAATCAAGCGGGCGGGGCGGTC
840 CTTAGACTGGGAATGAACT-CCGTATG-CCTAAGCCAACCGAC-GA--AA-----C---G-AG--
4606960 CGG
889 CGG
* * *
4606963 GCGGGCACTACGGCCGGCCAGAGAGACGGGATGCACACGCCGTGGATC------G-GATAGGTGG
1 GCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
4607021 GTTTAGGCACATCGATCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTTATACAA
65 GTTTAGGCACATC-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
4607086 TGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTT
129 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* * * * * * *
4607151 TCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGTAATTTTGGCTCTAAACTTT
194 TCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTG
* * * *
4607216 GTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAGGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
4607281 CAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCACG-CACTATAATGGCTACTGGTAGC
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-GACACTTTAATGGCTACTGGCAGC
*
4607345 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
4607410 GGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CGGCCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CCC
* * *
4607473 CCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCC
517 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC
* * * * *
4607538 GACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAAACCTCGGTCT
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
4607603 GGTCTC-ATTTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTA
647 GGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
4607667 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
711 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * *
4607732 GATCGATCGGGTCCCCCTCAGTGTGCTATCGATCTTTCTACCGTAACCCTTGGTCTGGTCTGATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATC
* * * *
4607797 TTAGACTGGGAATGAACTCCATATGCCTAAACCAACAGATGAAACGAGCGGGCGG
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
** * * * * * *
4607852 GCGGGCACTACGTTGTCTAGAGAGACGAGATGCGCAAGCCGTAGATCGATATGGTGGCAGGTGGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
4607917 TTTAGGCACATCTTCATATTTCT--ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
4607980 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACAACTCGTTTTCTATGTTTCATGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
* * * ** *
4608045 GAAACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTTCGGGGGGAGTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
* * * *
4608110 AGACGTGATCCTTGTATTTTTATTGGCATGCATAGAACAATTCAGCTAAAAACTCAAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
4608175 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
4608240 CCTGTAAAATCTCAAATGCTCTTTAAGAGGCTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4608305 CCAATATAGGGGCCAA
456 CCAATATAAGGGCCAA
4608321 TATAAGGGCC
Statistics
Matches: 5161, Mismatches: 591, Indels: 196
0.87 0.10 0.03
Matches are distributed among these distances:
881 7 0.00
882 18 0.00
883 24 0.00
884 3 0.00
885 3 0.00
886 24 0.00
887 5 0.00
888 64 0.01
889 261 0.05
890 621 0.12
891 296 0.06
892 559 0.11
893 817 0.16
894 145 0.03
895 199 0.04
896 110 0.02
897 330 0.06
898 39 0.01
899 18 0.00
900 19 0.00
901 7 0.00
902 4 0.00
903 226 0.04
904 559 0.11
905 341 0.07
906 310 0.06
907 147 0.03
908 1 0.00
909 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (891 bp):
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
Found at i:4605858 original size:25 final size:26
Alignment explanation
Indices: 4605830--4605881 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4605820 CCAATCCGAT
*
4605830 CTTAGATTGGGAA-GAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4605855 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4605881 C
1 C
4605882 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4608318 original size:12 final size:12
Alignment explanation
Indices: 4608301--4608332 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4608291 TGAGGGATAG
4608301 GGGGCCAATATA
1 GGGGCCAATATA
4608313 GGGGCCAATATA
1 GGGGCCAATATA
*
4608325 AGGGCCAA
1 GGGGCCAA
4608333 GTGCCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:4608428 original size:26 final size:26
Alignment explanation
Indices: 4608390--4608446 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
4608380 GTGGTCTGAC
* *
4608390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
4608416 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
4608442 CTTAG
1 CTTAG
4608447 GTCAGCCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:4610572 original size:901 final size:881
Alignment explanation
Indices: 4608846--4610748 Score: 2472
Period size: 901 Copynumber: 2.1 Consensus size: 881
4608836 CTGATCCGAT
* * * * *
4608846 CTTAGACTAGGAATGAACTCTGTATGCCGAAATCAACCCACGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * **
4608911 CGGCCTGAGGGGCT-GGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTATGTGCTACAGATC
66 CGGCCAGAGGGG-TGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTACAGATC
** * * * ** *
4608975 CGGCTACCGCAACACTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CGGCTACCGCAACACTCACTCAGATCCGATCTTAGACTAGGAATGAACTCCAAAAGCCTAAGCCA
* * *
4609040 ATCGACAAAACGAACGGGCGGGCGGTTGGGCACTATGCCGGCCAGAGAGACTGGATCGATAGGGT
195 ACCGACAAAACGAACGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACTGGATCGATAGGGT
* *
4609105 GGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAGAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
4609170 TCATACAATGGTCCCTTAAGCCTTTACGTGAAGTCTTATGGCAAGGCGAATCATTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTTACATGAAGTCTTATGGCAAGACGAATCATTTTCTATTTTT
* *
4609235 CATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAAGAGTTTTGGCCC
390 CATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAAGAGTTTTGGCCC
* * *
4609300 AAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
455 AAAACTT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATC
*
4609365 GAAGTGTACAAGATTTTGTGATCATTTGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
* * *
4609430 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTTGTTCTTGAGGTTTGATGAGG
584 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTATCGAGGTTTGATGAGG
* *
4609495 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCA
649 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACATGCGCACACCCCCCA
* * **
4609560 GCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTG
714 GCCCCCCGATCGCCAGAACCCCAATGCCACCAGTCAGGTTCTCCGGTGATGCTCCAACGATGGTG
* *
4609625 CCCCGGTGAAGAAAAATGCGGCACCAGCAAATACCCAAGCCCAGCATGTACTACCACAACCCTCA
779 CCCCGGCGAAGAAAAATGCGGCACCAGCAAACACCCAAGCCCAGCATGTACTACCACAACCCTCA
*** * * *
4609690 GTCTGGTCCAATCTGATACTTGGAATGAACTCCGTATG
844 GTCCAATCCAATCTGAGACTGGGAATGAACTCAGTATG
4609728 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTCAGC
*** *
4609793 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGTTGATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTACAGATCC
*
4609858 TGCTACCGCAAC-CTTCCACTCAG-TCCGATCTTAGACTAGGAATGAACTCCAAAAGCCTAAGCC
131 GGCTACCGCAACAC-T-CACTCAGATCCGATCTTAGACTAGGAATGAACTCCAAAAGCCTAAGCC
** * *
4609921 AACCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGTACTACGTCGGCCAGAGAGACGGGATGCGC
194 AACCGAC-AAA--A-CGAACGGGCGGGCGGGTGGGCACTACGCCGGCC----AGA---GA---G-
* ***
4609986 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGC
244 -A-C--TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
**
4610051 CATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAG-CTTTCACATGAAGT-TTAATGGCA
305 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTT-ACATGAAGTCTT-ATGGCA
* * **
4610114 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAATT
368 AGACGAATCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATT
** * *
4610179 TTTTTGAAAGGAGTTTTGGCCCCAAAC-T-TAGACATGATCCTTGTATTTTTGTTGGCATGCACA
433 TTTTCAAAAAGAGTTTTGGCCCAAAACTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
*
4610242 AAAAAATTCAGCTAAAAAATCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
498 AAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCAT
*
4610307 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
562 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
4610372 GTGTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACTAGCACCCATCACA
627 GTGTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
** * * **
4610437 CATCTTATGCGTACACCCCTCCGGCCCCCCTGATCTTC-GAAACCCCAATGCCACCAGTCAGGTT
692 CATCACATGCGCACACCCC-CCAGCCCCCC-GATCGCCAG-AACCCCAATGCCACCAGTCAGGTT
** * * * * ** *
4610501 CTCCGGTGATGCTCCAACGATGGTGCCTTGGCGAAGTAAAATGTGGCACCAGCACACGCCTGAGT
754 CTCCGGTGATGCTCCAACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAAACACCCAAGC
* ** * * * * *
4610566 CCAGCATGTGCTGTCACAACTCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTAGTATG
819 CCAGCATGTACTACCACAACCCTCAGTCCAATCCAATCTGAGACTGGGAATGAACTCAGTATG
** * * *** *
4610629 CTTAGAAAGGGATTGAACTCCGTATGCCTAAGTCAACCTGTGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* ** * * * *
4610694 CGGCCAGAGGGGCGGGATGTACTAGGCAGGGATCGGCCGGGTCCCCCTCTGCGTG
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTG
4610749 ATCATTGTAT
Statistics
Matches: 880, Mismatches: 113, Indels: 37
0.85 0.11 0.04
Matches are distributed among these distances:
881 2 0.00
882 167 0.19
883 7 0.01
885 1 0.00
886 27 0.03
890 3 0.00
893 2 0.00
896 1 0.00
898 80 0.09
899 154 0.17
900 17 0.02
901 419 0.48
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTACAGATCC
GGCTACCGCAACACTCACTCAGATCCGATCTTAGACTAGGAATGAACTCCAAAAGCCTAAGCCAA
CCGACAAAACGAACGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTTACATGAAGTCTTATGGCAAGACGAATCATTTTCTATTTTTC
ATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAAGAGTTTTGGCCCA
AAACTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTATCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACATGCGCACACCCCCCAGC
CCCCCGATCGCCAGAACCCCAATGCCACCAGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCC
CCGGCGAAGAAAAATGCGGCACCAGCAAACACCCAAGCCCAGCATGTACTACCACAACCCTCAGT
CCAATCCAATCTGAGACTGGGAATGAACTCAGTATG
Found at i:4611263 original size:526 final size:526
Alignment explanation
Indices: 4610213--4611270 Score: 1377
Period size: 526 Copynumber: 2.0 Consensus size: 526
4610203 AACTTAGACA
* *
4610213 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAATATT
1 TGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
* *
4610278 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
66 TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
4610343 AAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
4610408 ATAAGGGCCAGGTACTAGCACCCATCACACATCTTATGCGTACACCCCTCCGGCCCCCCTGATCT
196 ATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCG-ACA------C-GACCCCCTGATCA
* * ** * * *
4610473 TCGAAACCCCAATGCCACCAGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCTTGGCGAAGT
253 CCGAAACCCCAATACCACCAGTCAGGTTCTCCGACGATGCTCCAACAATGGTGCCCTGGCGAAGA
* * ** * * * *
4610538 AAAATGTGGCACCAGCACACGCCTGAGTCCAGCATGTGCTGTCACAACTCTCGGTCCAATCCGAT
318 AAAATATGGCACCAACACACGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCAAT
* *
4610603 CTTAGACTGGGAATGAACTTAGTATGCTTAGAAAGGGATTGAACTCCGTATGCCTAAGTCAACCT
383 CTTAGACTGGGAATGAACTTAGTATGCTTAGAAAGGGAATGAACTCCGTATGCCTAAGTCAACCC
*** * * * * *
4610668 GTGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGTACTAGGCAGGGATCGGCCG
448 ACCAAACGAGCGTACGGACGCACAGTCGGCCAAAGGGGCGGGATGAACAAGGCAGGGATCGGCCG
4610733 GGTCCCCCTCTGCG
513 GGTCCCCCTCTGCG
*
4610747 TGATCATTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
1 TGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
4610812 TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTACTGGCAGCAAACC
66 TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG---CTACTGGCAGCAAACC
* *
4610877 TGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
128 TGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCC
** * * * * *
4610942 AATATAAGGGTGAAGTGCCAGCACCTATCGCACATCATGTGCG-CA-GACCCCCTGATCACCGGA
193 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGACACGACCCCCTGATCACCGAA
* * * *
4611005 ACCCCAGTACCACCGGTCAGGTTCTCCGACGATGCTCCGATAATGGTGCCCTGG-GAAGAAAAAT
258 ACCCCAATACCACCAGTCAGGTTCTCCGACGATGCTCCAACAATGGTGCCCTGGCGAAGAAAAAT
* ** * *
4611069 ATGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCAGTCCAATCTTAG
323 ATGGCACCAACACACGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCAATCTTAG
* * * ** * * *
4611134 ATTGGGTATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTTAACCCACCTA
388 ACTGGGAATGAACTTAGTATGCTTAGAAAGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAA
* * * *
4611199 ACGAGCGTGCGGACGCACAGTCGGCCAAAGGGGCGGGAT-AAGCAAGTCGGGGATCGGTCGGGTC
453 ACGAGCGTACGGACGCACAGTCGGCCAAAGGGGCGGGATGAA-CAAGGCAGGGATCGGCCGGGTC
4611263 CCCCTCTG
517 CCCCTCTG
4611271 TGTGCTGTCG
Statistics
Matches: 453, Mismatches: 67, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
525 1 0.00
526 174 0.38
527 59 0.13
534 106 0.23
535 2 0.00
537 111 0.25
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (526 bp):
TGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGACACGACCCCCTGATCACCGAAACC
CCAATACCACCAGTCAGGTTCTCCGACGATGCTCCAACAATGGTGCCCTGGCGAAGAAAAATATG
GCACCAACACACGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCAATCTTAGACT
GGGAATGAACTTAGTATGCTTAGAAAGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACG
AGCGTACGGACGCACAGTCGGCCAAAGGGGCGGGATGAACAAGGCAGGGATCGGCCGGGTCCCCC
TCTGCG
Found at i:4612761 original size:708 final size:704
Alignment explanation
Indices: 4611679--4613828 Score: 2987
Period size: 708 Copynumber: 3.0 Consensus size: 704
4611669 AAAAAAATTC
* * *
4611679 AGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACAC
1 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
4611744 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
66 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
4611809 AGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACTCATCGCACATCATGTG
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * *
4611874 CGCACACCCCCCGATCCCCCCGATCACCGGAACCCCAATACCGCCGATCAGGTTCTCCGGCGATG
196 CGCACACCCCCCGA-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * *
4611939 CTCCGACCATGGTGCCCCGACGAAGAAAAATTCGGCACCAGAACATGCCCCAGCCCAGCATGTGC
260 CTCCGACGATGGTGCCCCGACGAAG-AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * ** * * *
4612004 TGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGACTGAGCTCCGTATGCCTAAGTCAACCC
324 TGCCATAAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
4612069 ACGAAACGAGCATACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCG
389 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCG
*
4612134 GGTCCCACTCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCTGGTTTGATCTTAGACTGG
454 GGTCCCACTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTCGATCTGGTTTGATCTTAGACTGG
*
4612199 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTATGCCG
519 GAATGAACTCCGTATGCCTAAGCCAACCGA-GAAACAAGCGGGCGGGCGGGCGGGCACTATGCCG
4612264 GCCAGAGAGACTGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
583 GCCAGAGAGACTGGATGCGCA-GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
4612329 ATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
647 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
4612387 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATCTCAGACAC
1 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
4612452 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
66 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
4612517 AGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
4612582 CGCACACGCCCCCGACCCCCCGATCGTCGGTACCCCAATGCCGCCGGTCAGGTTCTCCGGCGGTG
196 CGCACAC-CCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * * * * * *
4612647 CTCTGACGATGGTGCCTCGATGAAGAAACATGCGGCACCTGCCCATGCCTGAGCCTAGTATGTGC
260 CTCCGACGATGGTGCCCCGACGAAGAAA-ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
4612712 TGCCATAAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCA
324 TGCCATAAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *
4612777 ACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCG
389 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCG
* * * *
4612842 GGTCCCTCTCTGCGTGCTGCCAATCCTGCTATTGCAACCCTC-AGTCTGGTTTGATCTTAGATTG
454 GGTCCCACTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTCGA-TCTGGTTTGATCTTAGACTG
*
4612906 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCAGGCGGGCGGGCACTATGCC
518 GGAATGAACTCCGTATGCCTAAGCCAACCGA-GAAACAAGCGGGCGGGCGGGCGGGCACTATGCC
* *
4612971 GGCCAGAGAGACTGGATGCACCAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTT
582 GGCCAGAGAGACTGGATGC-GCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
4613036 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
646 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
4613095 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
1 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
4613160 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGGCTGTGAGTTCTCA
66 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
4613225 AGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTG
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
4613290 CGCACACCCCACCGGCCTCACCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
196 CGCACACCCC-CCGACC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * *
4613355 GCTCCGACGACGGTGCCCCGACGAAGAAGATTACGGCACCAGCACATGCCCGAGCCCAACATGTG
259 GCTCCGACGATGGTGCCCCGACGAAGAA-AATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
***
4613420 CTGCTGCAGCCCTCGGTTCGGTCTGATCTTAGAT-TGGGAATGAACTCCGTATGCTTAGACTGGG
323 CTGC--CA----T--AAAC---C---TC--AG-TCT-GG--T---CT--G-AT-CTTAGACTGGG
* * * * * *
4613484 AATGAACTCTGTACGTCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGG
361 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
4613549 GCAGGATGCCCAAGCTGGGGATCGATCGGGTCCCGCTCTGCGTGCTGTCAATCCTACTGCCGCAA
426 GCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCAATCCTGCTGTCGCAA
* * *** * * *
4613614 CCCTCGGTTTGGTCCAATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAATCGA-AGA-AA
491 CCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGAAACAA
* ** * * * * *
4613677 -CGAGCGAACGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGCTAGG
556 GCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACTGGATGCGC-AGCCGTGGATCGATAGG
* *
4613741 GTGGTAGGTGGGTCTAGGCACATCTTCAAATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
620 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
*
4613806 ATTCATACAATGGTCTCTTA
685 ATTCATACAATGGTCCCTTA
4613826 AGC
1 AGC
4613829 CTTCACATGA
Statistics
Matches: 1279, Mismatches: 127, Indels: 49
0.88 0.09 0.03
Matches are distributed among these distances:
707 7 0.01
708 831 0.65
709 107 0.08
710 1 0.00
711 2 0.00
715 1 0.00
717 1 0.00
720 1 0.00
723 2 0.00
725 3 0.00
726 3 0.00
728 1 0.00
730 1 0.00
731 138 0.11
732 2 0.00
733 3 0.00
734 2 0.00
735 173 0.14
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (704 bp):
AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCATAAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGG
TCCCACTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTCGATCTGGTTTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGAGAAACAAGCGGGCGGGCGGGCGGGCACTATGCCGGCC
AGAGAGACTGGATGCGCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
Found at i:4615258 original size:26 final size:26
Alignment explanation
Indices: 4615220--4615272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4615210 CCAGTCTGAT
4615220 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
4615246 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4615272 C
1 C
4615273 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4616151 original size:26 final size:26
Alignment explanation
Indices: 4616122--4616174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4616112 TTGGTCCGAT
4616122 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
4616148 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4616174 C
1 C
4616175 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Done.