Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 44 of 120
Found at i:4997658 original size:26 final size:26
Alignment explanation
Indices: 4997622--4997674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4997612 TCGGTCTGAT
*
4997622 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4997648 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4997674 C
1 C
4997675 CTAAAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4998549 original size:26 final size:26
Alignment explanation
Indices: 4998520--4998572 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4998510 CCGATCCGAT
4998520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4998546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4998572 C
1 C
4998573 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5001087 original size:26 final size:26
Alignment explanation
Indices: 5001051--5001100 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5001041 CAGGACCGAT
5001051 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
5001077 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
5001101 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:5003685 original size:26 final size:26
Alignment explanation
Indices: 5003647--5003699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5003637 CTGGTCTGAT
*
5003647 CTTAGATTAGGAATGAACTCTATATG
1 CTTAGATTAGGAATGAACTCCATATG
*
5003673 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTAGGAATGAACTCCATATG
5003699 C
1 C
5003700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCATATG
Found at i:5003933 original size:896 final size:896
Alignment explanation
Indices: 5002148--5006417 Score: 5384
Period size: 896 Copynumber: 4.8 Consensus size: 896
5002138 ACCGACGAAA
* * *
5002148 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCC-A--CCATTTTTATGG
1 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
5002210 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGACGACTCGTTT
66 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
5002275 TTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTGGGGATTTTTT-AAATATTTTTGGAAGGAG
131 TATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
* * *
5002339 TTTTGGCCCCAAACATGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
196 TCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
5002404 TAAAAACTCT-AAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCTCCATTTTAGACACTT
261 TAAAAACT-TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
5002468 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAGTTCTCGA
325 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGA
** * * * * *
5002532 GGTTTGATGAGGGATACGGGGATATTATATGGGCTAAGCACCAGCACCCATTGCACATCATGTGC
389 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** *
5002597 GCACACCCCCCAGCCCCCTGATCGTCGGAACCCCAATGCCGCCTATCAGGTTCTCCGGCAATGCT
453 GCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGGCGATGCT
* *
5002662 CCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTG
517 CCGGCGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*** * *
5002727 CCGTAACCCTCGGTCCAATCCT-ATCTTAGACTGGGAATGAACTCCGCATGCTTAAACTGGGAAT
581 CCGTAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* ** * *
5002791 GAACTCCGTCTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCTGAGAGGCG
645 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
* * * * * * *
5002856 GGATGTGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGCTGATCCTGTTGCCGTAACCC
710 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGCCGCAACCC
* * ** * * *
5002921 TCTGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATTGATGAACCGA-G
775 TCGGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGG
* * *
5002985 CGGGAGGGCGGGTGGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGAT
840 CGGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
* * *
5003042 C-A-AGGGTGGTAGCTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTGATGG
1 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
5003105 CTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
66 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
5003170 TATATTTTTCACGATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGATGGAG
131 TATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
* * * *
5003235 TCTTGGCCCCAAACTTGGTATACATTATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGC
196 TCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
5003300 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTAAGACACTTT
261 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
* * *
5003365 AATAGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAAGGGGTTTGAGTTC-CTGAG
326 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC-GAG
* *
5003428 GTTTGATGAGGGATAGGTGGCCAATATAAAGGCCAAGTACCAGCACCAATCGCACATCATGTGCG
390 GTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
5003493 CACACCTGCCCGGCCCCCTGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT
454 CACACC-CCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-GGCGATGCT
* *
5003558 CCGGCGATGGTGCCGCGACGAAGAAAAATGCGGCACAAGCACATGCCCGAGCCCAGCATGTGCTG
517 CCGGCGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** * * * ** *
5003623 CCACAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACTCTATATGCTTAGATTGGGAATG
581 CCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
*
5003688 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
646 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
* ** * * * * *
5003753 GATGCACAAGTTGGGGATTGACCGGGTCCCCCTTTACGTGCTGCCGATCCTGTTGCTGCCACCCT
711 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGCCGCAACCCT
* *
5003818 CGGTCTGGTCCGATCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGA-GC
776 CGGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGGC
*
5003882 GGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCGTGGAT
841 GGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
* *
5003938 AGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC-A--CCATTTTTATGG
1 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
5004000 CTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-ATT
66 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
5004064 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTTCAGAAGGA
131 TATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT-GGAAGGA
* * *
5004129 G-CTTTGGCCCCAAACATGGTAGACATGATCGTTGTATTTTTATTGGCATGCACAAAAAAATTCA
195 GTC-TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
5004193 GCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
259 GCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
* *
5004258 TTAATTGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGA
324 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGA
*
5004323 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTGC
389 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
5004388 GCACACCCCCCGGCCCCCCTGATTGTCGAAACCCCAATGCTGCCTGTCAGGTTCTCTGGCGATGC
453 GCACACCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-GGCGATGC
* * *
5004453 TCCGGCGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAG-CCATGCATGTG-
516 TCCGGCGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-GCATGTGC
* * * * *
5004516 TCGCAGCAACCCTCGGTCCGGTCTGATTTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGA
579 T-GCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* ** * *
5004581 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGCGCTCATTCAGCCAGAGGGG
643 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * *
5004646 CGGGATGCGTAAG-C-----T-----GGGTCCCCCTCTACGTTCAT--CGAATCCTACTACCGCA
708 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGC-TGCCG-ATCCTATTGCCGCA
* * * ** * * **
5004698 ACCCTTGGTTCGGTCTGATCTTAGATTGGAAATGAACTCCGTACGCCTAAGCCAACCAACGAAAC
771 ACCCTCGGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC
* * *
5004763 GATTGGGCGGGAGGGCGGGTGGGCACTACATCGGCCAGAGAGACGGGATGCGTAAGCTGTGGAT
836 GA---GGCGGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
* *
5004827 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGACATTTTTATGG
1 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
5004892 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
66 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
5004957 TATATTTTTTACGATTTTTGAAACCTTTTACAGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAG
131 TATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
*
5005022 TCTTGGCCCCAAACTTGGTAGACATGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
196 TCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
5005087 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAGGTGTCCCCATTTTAGACTCTTT
261 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
* *
5005152 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
326 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
** *
5005217 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCATGAGCAC
391 TTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--C
* * * * * *
5005282 ACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGCTTCTACGGCGATAC
453 GCACACCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGGCGATGC
* ** * * * * *
5005347 TCCGGTGATGGCACCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCAAGCCTAGCATGTGCT
516 TCCGGCGATGG-TGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
5005412 GTCGTAACCCTCGGTCTGAT-TCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
580 GCCGTAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
5005476 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAAAGGGGC
644 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
* * ** * ** * * *
5005541 GAGATGCGCAAGCCAGGGATCGGTCGTGTCCCCCTCTACGTGCCACTGATCCAATTGCCACAACC
709 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGCCGCAACC
** * * * *
5005606 CTCAATCCGGTTCAATCTTCGACTA-GGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGA
774 CTCGGTCCGGTCCGATCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA
* * * *
5005670 GCGGTGCGGGCGGGCGGGCGGGCACTATGCCGGCC-GAGGAGACGGGATGGCGGAAGCCG-GGAT
838 ---G-GCGGGAGGGCGGGCGGGCACTACGTCGGCCAGA-GAGACGGGAT-GCGTAAGCCGTGGAT
* ** *
5005733 CGATAGGGTGGTAGGTGGGTTTAAGGAACATCTTCATATTTCTGTGTGCTTAATGCCCATTTTTA
1 CGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCATGC-CAATG-CCATTTTTA
* * *
5005798 TGGGCTTGTAAATTCATACAAGCGGTCCGTTAAGCCCTTCACGTGGAAGTTTCATAGCAAGACGG
63 T-GGCTTGTAAATTCATACAA-TGGTCCCTTAAG-CCTTCACGT-GAAGTTTCATGGCAAGAC-G
** * * *
5005863 ACTCGTTTT-TGATTTTTTCACGATTTTCAAAACTTTTTACTGGTCCGGGTTTTTTTTTAAATTT
123 ACTCGTTTTAT-A-TTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGGG-ATTTTTTAAAATTT
* * * * * *
5005927 TTTTGCG-AGGATTTTTTGTCGCCCAAACTTGGTAGACGTCGATCCTTTTATTTGTT-TGGGCTA
184 TTTTG-GAAGGA-GTCTTGGC-CCCAAACTTGGTAGACAT-GATCCTTGTATTT-TTGTTGGC-A
* * *
5005990 TGCAC-AAAAAATTCAGATAAAAACTCGAAGGTGTACAAGATTTTGTGGACCATTTGGAAAAAGT
243 TGCACAAAAAAATTCAGCTAAAAACTTGAA-GTGTACAAGATTTTGT-GACCATTTGAAAAAAGT
* * *
5006054 GTCCCCATTTTAGACACTTAAATGGCTGCTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAA
306 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * *
5006119 GGGGGTGTGAGTTCTCAAGGTTTGACGAGTGATACGGGGCTAATATAAGGGCCAAGTACCAGCAC
371 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * *
5006184 CCATTGCACATCATATGTGCACACCGCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGCTGGT
435 CCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGT
* * * * *
5006249 CATGTTCTC--CG--G-T-----AATGGTGCCCCAGCGAACAAAAATGTGGCACCAGCACATGCC
499 CAGGTTCTCGGCGATGCTCCGGCGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCC
** * * *
5006304 CGAGCCCAAAATGTGCTACCGTAACCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGT
563 CGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* *
5006369 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
628 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
5006418 AAGTGGGCGG
Statistics
Matches: 2942, Mismatches: 353, Indels: 147
0.85 0.10 0.04
Matches are distributed among these distances:
884 2 0.00
885 81 0.03
886 1 0.00
889 100 0.03
890 2 0.00
892 356 0.12
893 57 0.02
894 285 0.10
895 435 0.15
896 854 0.29
897 8 0.00
898 42 0.01
900 1 0.00
905 81 0.03
906 62 0.02
907 32 0.01
908 4 0.00
909 143 0.05
910 20 0.01
911 10 0.00
912 9 0.00
913 18 0.01
914 12 0.00
915 23 0.01
916 4 0.00
917 23 0.01
918 6 0.00
919 18 0.01
920 78 0.03
921 29 0.01
922 146 0.05
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (896 bp):
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
TCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGCGATGCTCCGG
CGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGCCGCAACCCTCGGTC
CGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGGCGGGAG
GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
Found at i:5004573 original size:26 final size:26
Alignment explanation
Indices: 5004544--5004595 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5004534 CGGTCTGATT
5004544 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
*
5004570 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
5004596 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:5005473 original size:26 final size:26
Alignment explanation
Indices: 5005437--5005489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5005427 CTGATTCGAT
*
5005437 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5005463 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5005489 C
1 C
5005490 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5006382 original size:26 final size:26
Alignment explanation
Indices: 5006346--5006398 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5006336 CTGGTTTGAT
5006346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5006372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5006398 C
1 C
5006399 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5007114 original size:26 final size:26
Alignment explanation
Indices: 5007085--5007136 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5007075 CCGATCCGAT
* *
5007085 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
5007111 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
5007137 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:5008202 original size:898 final size:897
Alignment explanation
Indices: 5006372--5009852 Score: 4854
Period size: 899 Copynumber: 3.9 Consensus size: 897
5006362 ACTCCGTATG
* * * *
5006372 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCAGGAGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
* * * * * *
5006437 CACTACGCCGTCCAGAAAGACGGGATGTGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTGG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
5006502 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
5006567 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACACGTTTTTTATTTTTAATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
5006632 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC-AACTTGGTAGACA
261 TTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGTTTTGGCCCCAAACTTGGTAGACA
* * **
5006696 TGATCCTTGCATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATT
* *
5006761 TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
5006826 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCAAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * **
5006891 ATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCCCCGGCCCCCTCGATCAC
520 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGT
* * * * *
5006956 CGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGACAAAGAA
585 CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAA
* * * **
5007021 AAATGCAGCACCAGCACTTGTCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATC
650 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATC
* * *
5007086 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGTCTAAGTCAACCCA
715 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
5007151 CGAAATGAGCGTGCGGGCGCTCTGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGCATCGATCAG
780 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGATCGG
** ** * * *
5007216 GTCCCCTTCTGTGTGCTGTCAATCCTGCTGCCGCAACCCTCAGC-CCAGTCTGAC
845 GT-CCCTTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCA-CTCCGGTCTGAT
*
5007270 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
*
5007335 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTC-TTAGGGTGGTAGGTGGGTTTA
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTA
* *
5007399 GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
5007464 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
5007529 CTTTTTATGATTTGGGATTTTTTAAAAATTCTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGGGATTTTTT-AAAATT-TTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
5007594 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACGCGAAGTGTACAAGA
323 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGA
* * *
5007659 TTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAAGGGCTACTGGTAGCAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
5007723 ATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
5007788 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCTCCTGGCCCCCCCGATC
518 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCCGATC
5007853 GTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAA
583 GTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAA
* * * **
5007917 GAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTTTG
647 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCG
* * * **
5007982 ATCTTAGACTGGGAATGAACTTCGTATCCTTAGACTTGGAATGAACTCTATATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
5008047 CCACGAAA-GAGCGTGAGGGCGCTCAGCCGACCAAAGGGGCGAGATGCGCAAGTCGGGGATCGAT
777 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGAT
* *
5008111 CGGGTCCCTATCTGCATGTTACCGATCCTGCTGCCGCAACCCTCACTTCGGTCTGAT
842 CGGGTCCCT-TCTGCATGCTACCGATCCTGCTGCCGCAACCCTCACTCCGGTCTGAT
* * * *
5008168 CTTAGACTATGAATGAACTCTGTATGCTTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCAGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCAGG
* *
5008233 CGGGCACTACGCCGGCCAGAGAGCCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
***
5008298 TTAGGCACATCTTCATATTTCTATGTGCC-A--CCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
5008360 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
5008425 AAACTTTTTGCGGTTCCGGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCTAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
* * *
5008490 GACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAA-GTCGAAGTGTAAA
321 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACG-CGAAGTGTACA
* *
5008554 AGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
5008618 CCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCTCGAGGTTTGATGAGGGATAGGG
450 CCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGG
* *
5008683 GGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCC
513 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCC
** * * * *
5008748 CGATCGTCGGAACCCCAAAACCGCTGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGA
578 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA
* * * * * *
5008813 CGAAGAAAAGTGGGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGTCACAACCCTCGGTCCCA
643 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGA
* *
5008878 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGT
708 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
5008943 CAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCTAGAGGGAC-AGGATGCGCAAGCCAGGGA
773 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGTCGGGGA
* * * * *
5009007 TC-AACTGGGTCCCCCTCTACATGCTACCGATCCTGCTGCCGTAACCCTCGA-TCCGATCTGAT
837 TCGATC-GGGT-CCCTTCTGCATGCTACCGATCCTGCTGCCGCAACCCTC-ACTCCGGTCTGAT
* * * *
5009069 CTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCAGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA----GG
* ** * * *
5009134 CGGGCACTACGCCGACCAGAGAGACAAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGATTGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
5009199 TCAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
5009264 TCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * *
5009329 AAACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTA
* * *
5009394 GACATGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
321 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAA
* * * * * *
5009459 GATTTTGTGACCATTTCAATAAAGTGCCCCCATTTCAAACACTTTAAAGGCTACTGGTAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
5009524 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTTGAGGATTGATGAGGGATATGGGGC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
5009589 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CCCCCCG
516 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCT-GGCCCCCCCG
*
5009653 ATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGATG
580 ATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACG
* * * * * * * *
5009707 ATGAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAAGCCTCGGTCCGGTC
645 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATC
* * *
5009772 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
710 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
5009837 ACCGATGAAACGAGCG
775 ACCCACGAAACGAGCG
5009853 GATGGGCAGG
Statistics
Matches: 2311, Mismatches: 238, Indels: 74
0.88 0.09 0.03
Matches are distributed among these distances:
892 143 0.06
897 12 0.01
898 521 0.23
899 527 0.23
900 373 0.16
901 219 0.09
902 97 0.04
903 126 0.05
904 281 0.12
905 12 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGATCGGG
TCCCTTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCACTCCGGTCTGAT
Found at i:5008923 original size:26 final size:26
Alignment explanation
Indices: 5008884--5008936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5008874 CCCATCCGAT
* *
5008884 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
5008910 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
5008936 C
1 C
5008937 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:5009812 original size:26 final size:26
Alignment explanation
Indices: 5009776--5009828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5009766 CCGGTCTGAT
5009776 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5009802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5009828 C
1 C
5009829 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5010517 original size:26 final size:26
Alignment explanation
Indices: 5010481--5010532 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5010471 CTGATTCGAT
* * *
5010481 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
5010507 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
5010533 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:5011737 original size:844 final size:838
Alignment explanation
Indices: 5009802--5012269 Score: 2875
Period size: 864 Copynumber: 2.9 Consensus size: 838
5009792 ACTCCATATG
* * *
5009802 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGATGGGCAGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC--A--GGCAGGCGGG
* *
5009867 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG-TAGGGTGGTAGGTGGGTTTAG
* * * * *
5009932 CCACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGATCCC
126 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
5009997 TTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
191 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* **
5010062 TTTTTACGGTTCGGGAATTTTTAAAATTTTGTCGAAACGATTTTTCGCCCCAACTTGGTAGACAT
256 TTTTTACGGTTCGGG-A---TT----TTTT-T--AAA--ATTTTT--TCAGAA---GG-AG---T
** * *
5010127 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTT
299 --TTTTTCTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
5010192 TGTAACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
361 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * *
5010257 AAATCGC-AAATGCTCTTTAAGTGGTTGTGACTTCTTGAGGTTTGATGAGGGATACGGGGCCAA-
426 AAATC-CTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * **
5010320 ATAAGGGCCAAGTACCAGCACCCATCACACGTCATGTGCGCACACCCCCCGGCCCCTTCGATCAC
490 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCT-GATCGT
*
5010385 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCT-CTGGCGATGGTGCCCTGGCGAAGA
554 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCT-GCGATGGTG-CCTAGCGAAGA
* * ** ** * * * * * * *
5010449 AAAATACAGCACCAGCACTTGCCTGATTCGATC-TTAGAT-TGGGAA---TGAACTCC-GTATG-
617 AAAATACGGCACCAGCACATGCCCAAGCCCAGCATT-GCTGTCGCAACCTTG--GTCCGGTCTGA
* * * * * **
5010507 -CTTAGACTGGGAATCAACTCCATATGTCTAAGTCAACCTATGAAACGAGAGTGCGGGCACTCTG
679 TCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCACTCAA
* * **
5010571 CCGGCCAGAGAGGCAGGATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGTGTGCTGCCGATC
744 CCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGATC
* * * *** **
5010636 TTGCTGCTGCAACCCTTGGTCCAATCTGAT
809 CTGCTGCCGCAACCCTCGAAACAATCCAAT
* * *
5010666 CTTAGACTAGGAATGAATTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCAAGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA----GCAGGCAGGCGGG
* * * * *
5010731 CACTACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTTGATTCTTAGGGTAGTAGGTGGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGTAGGGTGGTAGGTGGGTTTAG
5010796 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
126 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
5010861 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
191 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
5010926 TTTTTGCGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTTTCTATTTTTGTTGGCATG
256 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTTTCTATTTTTGTTGGCATG
* * * *
5010991 CACAAAACAATTCAGCTAAAAACGCGAAGTGCATAAGATTTTGTGACCATTTGAAAAAAATGTCC
321 CACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
5011056 CCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTGTAAAATCCTAAATGCTCTTTAAGGGG
385 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCTAAATGCTCTTTAAGGGG
* * * *
5011121 GTGTGAGTTCTCGAGGTTTAATGGGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCAT
450 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * **
5011186 CGTACATCATGTGCGCACACCCCCCCGACCCCCCTGATCGTCGAAACCCTAATGCCGCCGGTTGG
515 CGCACATCATGTGCGCACA-CCCCCCG-CCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
** * * *
5011251 GTTCTCCGACGATGCTCCTGCGATGGTGCCTAGATGAAGAAAAGTGCGGCACCAGCACATGCCCA
578 GTTCTCCGGTGATGCTCCTGCGATGGTGCCTAG-CGAAGAAAAATACGGCACCAGCACATGCCCA
* *
5011316 AGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCTGATTTTAGACTACGAATGAACTCCATAT
642 AGCCCAGCAT-TGCTGTCGCAA-CCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATAT
* * * * * *
5011381 GCCTAAGTCAACCCGCGAAAGGAGCGTGCGGTCACTCAACCGGCCAGAGGGGCAGAATGCGC-AG
705 GCCTAAGTCAACCCACGAAACGAGAGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCACAAG
* * * *
5011445 CCAGGGATC-GACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGAAATAGT
770 CCAGGGATCAG-CCCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGAAACAAT
5011509 CCAAT
834 CCAAT
* * * *
5011514 CTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCAGGTAGGCGGGCATT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCAGGCAGGCGGGCACT
*
5011579 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAGTAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-GTAGGGTGGTAGGTGGGTTTAGGCAC
* *
5011644 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAA
130 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
5011709 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTT
195 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
5011774 TACGGTTCGGGATTTTTTT-AAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTAGACAAGA
260 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA-GTTT-----------T--T--------
*
5011838 TACTTGTATTTTTGTTGGCATTCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
303 T-C---TATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
5011903 TGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
363 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
5011968 AT-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
428 ATCCT-AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
5012032 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC--ATTCGTC
492 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCTGA-TCGTC
** * * *
5012095 GGAACCCCAATGTAGCTGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCAGCGAAGAAAA
555 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCTGCGATGGTGCCTAGCGAAGAAAA
* * * *
5012160 ATACGGCACCAGCACATGCCCAAGCCTAGCATTTGCTGCCGCAACCATCGGTCCGGTCCGATCTT
620 ATACGGCACCAGCACATGCCCAAGCCCAGCA-TTGCTGTCGCAACC-TTGGTCCGGTCTGATCTT
* * * *
5012225 -GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAG
683 AGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
5012270 CGGACGGGCG
Statistics
Matches: 1378, Mismatches: 170, Indels: 111
0.83 0.10 0.07
Matches are distributed among these distances:
839 5 0.00
840 164 0.12
841 44 0.03
842 83 0.06
843 28 0.02
844 219 0.16
845 2 0.00
846 5 0.00
847 5 0.00
848 101 0.07
849 74 0.05
851 6 0.00
853 3 0.00
855 2 0.00
856 4 0.00
857 1 0.00
860 2 0.00
863 1 0.00
864 244 0.18
865 42 0.03
866 63 0.05
867 51 0.04
868 17 0.01
869 212 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (838 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCAGGCAGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGTAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTTTCTATTTTTGTTGGCATGCACAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCTAAATGCTCTTTAAGGGGGTGTGA
GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GTGATGCTCCTGCGATGGTGCCTAGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCA
TTGCTGTCGCAACCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGAGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAG
CCCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGAAACAATCCAAT
Found at i:5012971 original size:26 final size:26
Alignment explanation
Indices: 5012942--5012994 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5012932 CTGGTTTGAT
*
5012942 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5012968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5012994 C
1 C
5012995 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5014274 original size:26 final size:26
Alignment explanation
Indices: 5014245--5014297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5014235 CCGGTCCGAT
* *
5014245 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAAACTAGGAATGAACTCCGCATG
*
5014271 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGCATG
5014297 C
1 C
5014298 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGCATG
Found at i:5015157 original size:26 final size:26
Alignment explanation
Indices: 5015128--5015180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5015118 CCGGTCCAAT
*
5015128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
5015154 CTTAGTCAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
5015180 C
1 C
5015181 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:5016532 original size:887 final size:891
Alignment explanation
Indices: 5013610--5017701 Score: 5129
Period size: 877 Copynumber: 4.6 Consensus size: 891
5013600 TGACTAAGCG
* * *
5013610 AGAGAGACGGGATGTGCAAGCTGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
5013675 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTCACTTCATACAATGGT-CACTTAAGCCTTCAC
66 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCA-TTAAGCCTTCAC
* ** * * * **
5013739 GGGAAGTTTCATGGCAAGGTGACTCGTTTTCTCTTTTTCATGATTTTCAAAACTTTTT-ATGTTC
130 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTC
* * *
5013803 AGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGGCCCC-AACTTGGTAGACGTGATCCTTGTA
195 AGGA-TTTTTTAAAATTTTTTCGAAAGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
5013867 TTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATT
258 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
5013932 TGAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAA
323 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
5013997 TGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAA
388 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
5014061 GTA-CAGAACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCC
453 GTACCAGCACCCATCACACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * * *
5014125 AATGCCGCCGGTCAGGTTCTCCGGCGATGTTCCGACGATGGTGCCCTGGCGAAGAAAAATGTGGC
518 AATGCCGCCGGT-A-G---TCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGC
* ** * * *
5014190 ACCAGCACATGCCCGAGCAAAGCATGTGCTGCTGCAACTCTTGGTCCGGTCCGATCTTAGACTGG
578 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
5014255 GAATGAACTCCGCATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
643 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
5014320 CGTGCGGGAGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC
708 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTC
* * **
5014384 TGCATGCTGCCGATCCTACTACCGCAACCCTCAGTCCATTCCGATCTTAGACTGGGAATGAACTC
773 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
5014449 TGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCAGTACGCCGGCC
838 CGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGGCACTACGCCGGCC
* * * * *
5014507 AGAAAGACGGGATGCGCAAGCCATGGATCGATAGGATGGTAGGT-GGTTTACGTACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** *
5014571 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACA
66 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACG
* * * * *
5014636 TGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCA
* ** *
5014701 GGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGATCCAAACTTGGTAGATGTGATCCTTGTATT
196 GGATTTTTTAAAA-TTTTTTCGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
5014766 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
5014831 AAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
5014896 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
390 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
5014961 ACCAGCACCCATCACACATCATGTGCG--CACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAA
455 ACCAGCACCCATCACACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * ** *
5015024 TGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCGGCAC
520 TGCCGCCGGT-A-G---TCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * *
5015089 TAGCACA----T--G-CC--CA-----TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
580 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * *
5015140 ATGAACTCCGTATGCTTAGTCAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCA
645 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
5015205 TGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTT-T
710 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTTCT
* * * * * * * * * *
5015269 GTGTGCTACCAATCCTGCGACCGTAACCCTCATTTCGGTTCGATCTTAGACTAGTAATGAACTCC
774 GCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
5015334 TTATACCTAAGCCAACTGACGAAATGA----GCGGGCGGGCACTACGTCGGCC
839 GTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCC
5015383 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
5015448 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACG
* * *
5015513 TGAAGTTTCATGGCATGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGATTCA
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCA
* * * *
5015578 GGATCTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGG-AGGACATGATACTTGTAT
196 GGATTTTTTAAAATTTTTTC-GAAAGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTAT
* *
5015642 TTTTGTTGACTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * *
5015707 GAAAAAAGTGTTCCCATTTCGGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
5015772 GCTCTTTCAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGAGGGTCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
5015837 TTCCAGCACCCATTACACATCATGTGCGCACACACCCCCCGGACCCCCCGATCGCCGGAAACCCA
454 TACCAGCACCCATCACACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* *
5015902 ATACCGCC-G-A-T-CAG-GAT-CTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
519 ATGCCGCCGGTAGTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
* * * *
5015961 ACATGCCTGAGCCCAGGATGTGCTGCCGCAACCCTCGGTCTAGTTCTGATCTTAGACTGGGAATG
584 ACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATG
* * * *
5016026 AACTCCATATGCTTAGACCGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
648 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
5016091 GGGTGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCTACGT
713 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGT
* ** * * * * * *
5016156 GTTGTTGATCTTGCTGCCGCAACCCTTAGTCCGGTCTGATCCTAGACTGGGAATGAACTCCATAT
778 GCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
5016221 ACCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCC
843 ACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCC
* * *
5016270 AGAGAGACGGGATACGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGTG-ACATCATCAT
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCAT
* *
5016334 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCATTAAGCCTTCAC
65 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCAC
*
5016399 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
130 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTC
* * * ** *
5016464 GGGATTTTTTAAAATTTTTTCAAAAGGAG-TGTGGCTCCCAAACTTTTTAGACGTGATCCTTCTA
195 AGGATTTTTTAAAATTTTTTCGAAA-GAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTA
*
5016528 TTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA-TCGAAGTGTACAAGATTTTGTGACCA-T
258 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
5016591 TG-AAAAAGTGTCCCCATTTTTAGACACTTTAATGTCTAACCT-GCAGCAAACCTGTAAAATCTG
323 TGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCT-A-CTGGCAGCAAACCTGTAAAATCTC
* * * **
5016654 AAACGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATAGC
385 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
5016719 CAAGTACCAGCACCCATCGCACATCATGT--GCACATACCCCCTGGCCCCCCCGATCGTCGGAAC
450 CAAGTACCAGCACCCATCACACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAAC
* *
5016782 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGT
515 CCCAATGCCGCCGGT-A-G-TC-CAG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGT
*
5016847 GGCACCAGTACATGACC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
575 GGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * *
5016911 TTAGGAATGAACTCCGTACGCTTAGATTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
639 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
5016976 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCAC
704 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC-C
* * ** * * * *
5017041 CC-TCTGTGTGTTGTTGATCCTGCTACCACAACCCTCAGTCTGGTCCAATTTTAGACTGGGAATG
768 CCTTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATG
* *
5017105 AACTCCGTATGCCTAAGCCAACCGACGAAACGATCGGGCGGGCGGCGGGCGGGCACCACGCCGGC
833 AACTCCGTATACCTAAGCCAACCGACGAAACGA----GC--G-GGCGGGCGGGCACTACGCCGGC
5017170 C
891 C
* * *
5017171 AAAGAGACGGGATGCAACAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCCTTCA
1 AGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTTCA
* * *
5017236 TATTTTTGTGTGCCAATGCCATTATTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAAGCCC
64 TATTTCTGTGTGCCAATGCCA-T-TTTTATGGCTTGTAAATTCATACAATGGTCCATT-AAG-CC
* * *
5017301 ATCACGTGAAGTTTCAATGGCAAGACGACCTCGTATTTCCTAATTTTTCAATAGA-TTTTCAAAC
125 TTCACGTGAAGTTTC-ATGGCAAGACGA-CTCGT-TTT-CT-ATTTTTC-A-CGATTTTTAAAAC
* * * *
5017365 TTTTTTCGGTTTAATGG-TTTTTTAAAAATTTTTTTCGGAAAGATTTTTGGCCCCAAACTTGTTA
183 TTTTTGCGG-TTCA-GGATTTTTT-AAAA-TTTTTTC-GAAAGAGTTTTGGCCCCAAACTTGGTA
* * *
5017429 GAACGTGCTCCCTTGTATTTTTGTTGGCATGCCAAAAAAAAAAATTCAGCTAAAAACTCAAAGTG
243 G-ACGTGAT-CCTTGTATTTTTGTTGGCATG-C--ACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
5017494 TACAAGATTTTGTGATCCAATTATGAAAACAGTGTCCCCATTTCA-ACACCTTTAATGGCTACTG
303 TACAAGATTTTGTGA-CC-ATT-TGAAAAAAGTGTCCCCATTTCAGACA-CTTTAATGGCTACTG
*
5017558 GCAGCAAACCTGTAAAATCTCGAATG--C------------T--G-TCTCAAGGTTTG-TGAGGG
364 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * *
5017605 ATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACA-CCCCT
429 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACACCCCCC
*
5017667 GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
494 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
5017702 CAGGTTCTCG
Statistics
Matches: 2788, Mismatches: 312, Indels: 182
0.85 0.10 0.06
Matches are distributed among these distances:
868 40 0.01
869 3 0.00
870 2 0.00
871 1 0.00
872 1 0.00
874 1 0.00
875 2 0.00
876 63 0.02
877 392 0.14
878 1 0.00
879 36 0.01
880 6 0.00
882 22 0.01
883 325 0.12
884 140 0.05
885 26 0.01
886 135 0.05
887 280 0.10
888 4 0.00
890 1 0.00
891 1 0.00
892 2 0.00
894 210 0.08
895 78 0.03
896 140 0.05
897 342 0.12
898 31 0.01
899 23 0.01
900 1 0.00
901 35 0.01
902 38 0.01
903 23 0.01
904 1 0.00
905 63 0.02
906 10 0.00
907 72 0.03
908 22 0.01
909 7 0.00
910 3 0.00
911 3 0.00
912 7 0.00
913 17 0.01
914 10 0.00
915 6 0.00
916 22 0.01
917 14 0.01
918 20 0.01
919 1 0.00
921 20 0.01
922 22 0.01
923 3 0.00
924 3 0.00
925 28 0.01
926 16 0.01
927 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCA
GGATTTTTTAAAATTTTTTCGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCACACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
GCCGCCGGTAGTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
ATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCT
GCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATACC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCC
Found at i:5016934 original size:26 final size:26
Alignment explanation
Indices: 5016905--5016954 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
5016895 CCGGTCCGAT
5016905 CTTAGATTAGG-AATGAACTCCGTACG
1 CTTAGATT-GGAAATGAACTCCGTACG
5016931 CTTAGATTGGAAATGAACTCCGTA
1 CTTAGATTGGAAATGAACTCCGTA
5016955 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTCCGTACG
Found at i:5019962 original size:26 final size:25
Alignment explanation
Indices: 5019896--5019979 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 25
5019886 GTTGACTTAG
**
5019896 GCATGCGGAGTTCATTCAAAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
5019922 -CATCGGATGTTCATTCCCAGTCTAA
1 GCATCGGA-GTTCATTCCCAGTCTAA
5019947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
5019973 GC-TCGGA
1 GCATCGGA
5019980 TCAGATCGGG
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
24 8 0.15
25 19 0.36
26 22 0.42
27 4 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:5020849 original size:26 final size:26
Alignment explanation
Indices: 5020820--5020872 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5020810 GTTGACTTAG
5020820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5020846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5020872 G
1 G
5020873 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5021741 original size:26 final size:26
Alignment explanation
Indices: 5021705--5021754 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5021695 GTTGACTTAG
*
5021705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5021731 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
5021755 TAGATTGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5024048 original size:889 final size:891
Alignment explanation
Indices: 5018818--5025304 Score: 6162
Period size: 920 Copynumber: 7.2 Consensus size: 891
5018808 CATTTTGTCA
* * * * * *
5018818 GTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAAATCAAACCAGACCGAAGGTTGCAGCAGT
1 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGC
* * * * * * * *
5018882 AGGATCGGTAGCAAGCGGGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
64 AGGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCC-ACCCTCTGG-C
* * * *
5018947 T-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTA
127 TGGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTA
* * * * * * *
5019011 AGCATACGGAGTTCATTCCCAGTTTAAGAT-CAGACCGG-ACCGAGGGTTACGA-CAGTAGATGC
192 AGCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATGC
* ** * *** * * * *
5019073 TTGG-CT-CGGCAT-CTGCT-GGTGCTGTATTTTTCTT-CATCGTGGCACCATCGTCGGAGCATC
257 TAGGCCTGCGAAATGGTGCTGGGTGCCACAATTTTCTTGCACCGGGGCACCA--ATC---G--T-
* *
5019133 GCCGGAGAACATGACCGGCGGCATTGGGG-TTCCGATGATCGGGGCGGCCGGGGGG-GTGTGCCC
314 G-CGGAGAACCTGACCGGCGGCATTGGGGTTTCC-A-GATCGGGG-GACCGGGGGGTGTGTG--C
* *
5019196 ACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
373 ACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGACCCCCTATCCCTCATCAAACCTC
* * * * *
5019261 GAGAACTCACACCCCTTAAAGAGCATTTGGGATTTTACAGGTGTGGCTTGCTAGTAGCCATTAAA
437 GAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGT-TTGC-TGCCAATAGCCATTAAA
* * * *
5019326 GTG-CTTAAAAATAGGGGACA--CTTTTCAAATGGTCACAACAATCTTGTACACTTCAAGTTTTT
500 GTGTC-T-GAAAT-GGGGACATTTTTTTCAAATGGTCACAA-AAACTTGTACACTTCGAGTTTTT
* * * **
5019388 AGCT--ATATTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTTCCCAAGTTTGGGGCTT
561 AGCTGAAT-TTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTC-TACCAAGTTTGGGGCCA
* * * *
5019450 AAACTCCCTTCCGAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTC--AAA-CATGAAAA
624 AAACT-CCTTTC-AAAAAAATTT-AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
5019512 ATAGAAAACGAGTCCATCTTGCCATGAAACTTCACGTGAAGG-CCTAAGGGACCATTGTATGAAT
686 ATAGAAAACGAGT-CATCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAAT
* * * * *
5019576 TTACAACCCCATAAAAAATGGCAATTAGCACGCA-CAATATGAAGATGTGGCTAAAACCCACCTA
749 TTACAA-GCCAT-AAAAATGGC-ATTGGCACGTAGAAATATGAAGATGTGCCT-AAACCCACCTA
* ** * * * *
5019640 -CACCCTATCGATCCACGGCTTATGCATCCCGTTTCCTCTGGCTGGCGTAGTTGCCCGCCCGCCC
810 CCACCCTATCGA-CTACGGCTTGCGCATCCCGTCT-CTCTGGCCGACGTAG-TGCCCGCCCGTCC
* * * *
5019704 GCCCTTCCACCGCTCG-TTCAATCC
872 G-CC-TAC-CCGTTCGTTTC-GT-T
* ** * *
5019728 GTTGGCTTCGGCATAC-GAGTTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAG
1 GTTGGCTTAGGCATACGGAG-TTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAG
* * * * * * * *
5019792 TAGGATCGACAGCACACAGAGGGGGACCCGATCGATCC-CGACTTGCGCAACCCGCCCCTCTGGC
63 CAGGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCC-ACCCTCTGGC
* * ** *
5019856 CGGCTGAGCGCCCGCACGCTCGTTTTGTTGGTTGACTTAGGCATGCGGAGTTCATTCAAAGTCTA
127 TGGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTT----A----G-G--------AA---T-
* *
5019921 ACATCGGATGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCT-CGGATCAG-
171 --A-CGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGA
* * ** * * * *
5019984 ATCGGGGGTTG-TGGCAGCACATGTTAGG-CT-CGAGCAT-GTGCT-GGTGCCGCATTTTTCTT-
232 ACCGAGGGTTGCAAGCAGCACATGCTAGGCCTGCGA-AATGGTGCTGGGTGCCACAATTTTCTTG
** * * **
5020043 CGTCGGGGCACC-ATCGCCGGAGCATCGCTGGAGAACTTGGCCGGCGGCATTGGGGTTCTGAAGA
296 CACCGGGGCACCAAT---C---G--T-GC-GGAGAACCTGACCGGCGGCATTGGGGTT-TCCAGA
* * * *
5020107 TCAGGGGGGCCGGGGGGTGTGCGCACATGATCTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
350 TC-GGGGGACCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTG
*
5020172 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
413 ACCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * * * * * *
5020237 GTCTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAGACTTTTTTCAAATCGTCACAGAATC
477 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAAC
* * *
5020302 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
542 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTC
* * * * * * * * *
5020367 TACCAGGCTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAGAAATCCCAAACCATAAAAAGTTT
607 TACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTT
* * *
5020432 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGG-CTTAAGGT
671 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGG
5020496 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
735 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* *
5020561 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGACGTAGTGCCC
800 AACCCACCTACCACCCTATCGA-CTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * *
5020626 GCCCG--C-CC-GCCCGTTCGTTTCATCG
864 GCCCGTCCGCCTACCCGTTCGTTTCGT-T
** * *
5020651 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-CTGAGGGTTGCGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATC-GAGGGTTGC-GCAG
* ** * * * * *
5020715 TAGGATCAACAACACGCAAAAGG-GGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAG
63 CAGGATCGGCAGCACGC-AGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCC-ACCCTCTGG
* * * *
5020779 CCGGCTGAGCGCCCGT-ACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
126 CTGGCTGAGCGCCC-TCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTC
* * * ** * *
5020843 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGG-ACTGAGGGTTG-TGGTAGCATAT
190 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACAT
* * * ** * * *
5020905 G-TTGGGCTCCGGCAT-GCGCT-GGTGCCACATTTTTCTTTG--TCGGGGCACTGTCGTCGGAGC
255 GCTAGGCCTGCGAAATGGTGCTGGGTGCCACAATTTTC-TTGCACCGGGGCA----C--C--A--
** * * * * * *
5020965 ATC-ACCGGAGAACCTGACCGACGGCGTTGGGG-GTCCGATGATCGGGGGGCCGGGGGGTGAGCG
309 ATCGTGCGGAGAACCTGACCGGCGGCATTGGGGTTTCC-A-GATCGGGGGACCGGGGGGTGTGTG
* * *
5021028 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTGTCCCTCATCAAACCT
372 CACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGACCCCCTATCCCTCATCAAACCT
* *
5021093 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAATAGCCATTAAA
436 CGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAA
* * ** * ** * *
5021158 GTGACTGAAATGGGGAAACATTTTTCAAATGGTCACAAAATCTTGTTGACCTCGAGTTTGTAGCT
500 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCT
* * *
5021223 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTT-GGGCCAAAACTT
565 GAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
* * * **
5021287 CTTCTGAAAAAATTTTAAAAAATC-CAAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
630 CTT-TCAAAAAAATTTAAAAAATCTC-AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AA
* * * *
5021351 AATGAGTCGTCTTGCCATGAAACTTAACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAG
692 AACGAGTCATCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAG
5021415 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
756 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
5021480 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG-CC-CGT--CCGCTCG
821 A-CTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCTACCCGTTCG
*
5021541 TTTCGTCG
885 TTTCGT-T
*
5021549 GTTGGCTTAGGCATA-GGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGG-T--------
1 GTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGATCGAGGGTTGCGCAGCA
* * * * * *
5021604 GG--CGGCAGCAAGCAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATCCTGC-CCCTCTGGCC
65 GGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCC--CACCCTCTGGCT
* * * * * *
5021666 GGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 GGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5021731 GCATACAGAGTTCATTCCCAGTCTTAGAT-TGGATCGG-ACCGAGGATTAC-GGCAGCACATGCT
193 GCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATGCT
* ** * * *
5021793 -GGGCT-CGGGCAT-GTGCT-GGTGCCGCATTTTTCTT-CATCGGGGCACC-ATCGT-CGGAGAA
258 AGGCCTGC-GAAATGGTGCTGGGTGCCACAATTTTCTTGCACCGGGGCACCAATCGTGCGGAGAA
* ** * *
5021851 CCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
322 CCTGACCGGCGGCATTGGGGTTTC-CAGATC-GGGGGACC-GGGGGGTGTGTGCACATGATGTGC
*
5021916 GATGGGTGCTAGTACTTGGCCCTTATATT-AGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
384 GATGGGTGCTGGTACTTGG-CCTTATATTGA-CCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * * *
5021980 ACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACTAGTAGCCCTTAAAGTGTCAGAAAT
447 -CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
* * * * *
5022045 TGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTG
511 GGGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5022110 TACATGCCAACAAAAATACAAGGATCATGTCTACCAGGCTTGGGGCCAAAACTCCTTCCAAAAAA
576 TGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* * * *
5022175 ATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
641 A-TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* *
5022240 TCCATCAAACTTCACGTGAAGG-CTTAAGGTG-CCATTGTATGAATTTACAAGCCATAAAAATGG
705 CCCATGAAACTTCACGTG-AGGTCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
5022303 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTG
768 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CTACGGCTTG
** * * * *
5022368 CGCATCTGGTCTCTCTAGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCG
832 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCTACCCGTTCGTTTCGT-T
* * * * *
5022425 GTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA-CTGAGGGTTGTGGTAG
1 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATC-GAGGGTTG-CGCAG
* * * * ** ** * * *
5022489 CAAGATCGACAGCACGTAAAAAAGGACCCGACCGATCCCCGGCTTGTGCATCTCGC-CCCTCTAG
63 CAGGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATC-C-CACCCTCTGG
* * * * * *
5022553 CCGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
126 CTGGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCT
** * *
5022616 ---C-TA---AG---ATT----G-----GA-CCGGA---G---CGAGGGTTG-TGGTAGCATATG
191 AAGCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATG
* * ** * * * *
5022654 CTGGGCTTG-GGCAT-GTGCT-GGTGCCGCATTTTTCTTTG--TCGGGGCACC-GTCGTCGGAGC
256 CTAGGCCTGCGAAATGGTGCTGGGTGCCACAATTTTC-TTGCACCGGGGCACCAATCGT----G-
*** * * *
5022713 ATCACCGGAGAACCTGACCGGCGATGTTAGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGTGCA
315 -----CGGAGAACCTGACCGGCGGCATTGGGGTTTCCA-GATCGGGGGACCGGGGGGTGTGTGCA
* *
5022778 CATGACGTGCAATGGGTGCTGGTACTTGGCCTGTATATTGACCCCCTATCCCTCATCAAACCTCG
374 CATGATGTGCGATGGGTGCTGGTACTTGGCCT-TATATTGACCCCCTATCCCTCATCAAACCTCG
*
5022843 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
438 AGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
* * * *
5022908 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
503 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
5022973 TTTTTTTGTGCATGCCAAAAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCTAAAACTCCTT
568 TTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
5023038 CCAAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAACCATGAAAAATAGAAAACAA
633 TCAAAAAAA-TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
5023103 GTCATCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATA
697 GTCATCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5023167 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGAGCTA
761 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CTA
* *
5023232 TGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCT-CCCGTTCATTTC
825 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCG-CCTACCCGTTCGTTTC
5023296 GTT
889 GTT
* * * *
5023299 AGTTGGCTTAGGCATACGAAGTTCAATCCAGTGTAAGATCAGACTGGATCGAGGGTTGCAGCAGC
1 -GTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGC
* * * * *
5023364 AGGATCGGCAGCACACAGTGGGGGACCCGGTCGATCTTCGGCTTGCGCATCCCACACCTCTGGTT
64 AGGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCCAC-CCTCTGGCT
* *
5023429 GGCTGAGCGCTCTCACGCTTGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
128 GGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
* * * * *
5023494 GCATATGGAGTTCATTCCCAGTCTAAGAT-CGGA-CTGAACCGAGGGTTGCGA-CCGCACATGTT
193 GCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATGCT
* * *
5023556 AGG-CT-CGACCAT-GTG-TTGGTGCCACATTTTTCTT-CACCGGGGCACC-ATCGT-CGGAGAA
258 AGGCCTGCGA-AATGGTGCTGGGTGCCACAATTTTCTTGCACCGGGGCACCAATCGTGCGGAGAA
* *
5023614 CCTGACCGACGGCATT-GGGTTTCCATGATCGGAGGGACCGGGGGGTGTGTGCACATGATGCGCG
322 CCTGACCGGCGGCATTGGGGTTTCCA-GATCGG-GGGACCGGGGGGTGTGTGCACATGATGTGCG
*
5023678 ATGGGTGCTGGTACTTGGCCGTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACTC
385 ATGGGTGCTGGTACTTGGCC-TTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCAC-C
*
5023743 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTGTCTGAAATGG
448 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
5023808 GGACATTTTTTTCAAATGGTCACAAAAACTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGT
513 GGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGT
5023872 GCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
577 GCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
** *
5023937 TTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTCC
642 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTCC
*
5024002 CATGAAACTTCACGTGAGGTCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATT
707 CATGAAACTTCACGTGAGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * *
5024067 GGCACACAGGAATATGAAGATGTGCCTAAACCCACCTGCCACCTTATCGATCCACGGCTTGCGCA
772 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CTACGGCTTGCGCA
* *
5024132 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTACCCGTTCGTTTCGTCT
836 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCTACCCGTTCGTTTCGT-T
* * * * * * * *
5024189 GTTGGCTCAGGCATACGGAGTTCATTCCTTGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGATCGAGGGTTG-CGCAGC
*** * *
5024254 AGGATCGGCAGCACGCAGAGGAGGACCCAACCGATCGTCGGCTTGCGCATCCTAGCCCTCTGGCT
64 AGGATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCCA-CCCTCTGGCT
* * * *
5024319 GGCTGGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 GGCTGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
*
5024384 GCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGATCCGAGGGTTGCAAGCAGCACATGCT
193 GCATACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATGCT
* * * *
5024449 GGGCCTGGGAAATGGTGCTGGGTGTCGCAATTTTCTTGCACCGGGGCACCAATCGTGCGGAAGCA
258 AGGCCTGCGAAATGGTGCTGGGTGCCACAATTTTCTTGCACCGGGGCACCAATCGTGC-G--G--
* * * * *
5024514 TCACCAAGAACCTGACCGGCGGCATTGGGGGGTTCTAGCAATCGGGGGGGTTCGGGGGGGGCGTG
318 ------AGAACCTGACCGGCGGCATT-GGGGTTTCCAG--ATC--GGGGG-AC-CGGGGGGTGTG
* * * * *
5024579 CGGCACATGATGTGTGAATGGGTGCTAGTACTTGGCCCTTATATT-CCGCCCCTATAACCTCATC
370 -TGCACATGATGTGCG-ATGGGTGCTGGTACTTGG-CCTTATATTGAC-CCCCTAT-CCCTCATC
* *
5024643 AAAACCTCGAAGAACTCACAACCCGCTTAAAGAGCATTTGGAGA-TTTACAGGTTTGCTG-CAGT
430 -AAACCTCG-AGAACTCAC--CCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAAT
5024706 AGCCATTAAAGTGTCTGAAAAT-GGGACATTTTTTTC-AATGGTCACAAAAACTTGTACACTTCG
490 AGCCATTAAAGTGTCTG-AAATGGGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCG
*
5024769 AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
554 AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
*
5024834 GGCCAAAACTCCTTTCAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
619 GGCCAAAACTCCTTTCAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAA
* *
5024899 AAATAGAAAACGAGTCACCTTCCCATGAAACTTCACGTGAGGTCATAAGGGACCATTGTATGAAT
684 AAATAGAAAACGAGTCATCTTCCCATGAAACTTCACGTGAGGTCTTAAGGGACCATTGTATGAAT
* *
5024964 TTACAAGCCATAAAAATGGCATTGGCATGTGGAAATATGAAGATGTGCCTAAACCCACCTACCAC
749 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
5025029 CCTATCGATTCACGACTTGTGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGTCCGCCTGC
814 CCTATCGACT-ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCTAC
* *
5025094 CCGCTCGTTTCGTCG
878 CCGTTCGTTTCGT-T
*
5025109 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAAC
1 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGCG-CAGC
* * * * * *
5025174 AGGATTGACAACACGCAGAGGAGGACTCGGT-GAATCCTCGGCTTGCGTATCCCGCCCCTCTGGC
64 AGGATCGGCAGCACGCAGAGGAGGACCCGGTCG-ATCCTCGGCTTGCGCATCCC-ACCCTCTGGC
* * * * **
5025238 CGGCTGAGTGCCCGT-ACACTCGTTTTATGGGTTGACTTAGGAATACATAGTTCATTCCCAGTCT
127 TGGCTGAGCGCCC-TCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCT
5025302 AAG
191 AAG
5025305 ATCGGATCGG
Statistics
Matches: 4811, Mismatches: 529, Indels: 464
0.83 0.09 0.08
Matches are distributed among these distances:
863 57 0.01
864 5 0.00
865 1 0.00
868 5 0.00
870 1 0.00
871 387 0.08
872 79 0.02
873 14 0.00
874 189 0.04
875 50 0.01
876 434 0.09
877 91 0.02
878 4 0.00
879 2 0.00
880 4 0.00
881 1 0.00
883 4 0.00
884 8 0.00
885 188 0.04
886 4 0.00
887 5 0.00
888 20 0.00
889 456 0.09
890 352 0.07
891 5 0.00
892 15 0.00
893 11 0.00
894 4 0.00
895 11 0.00
896 19 0.00
897 104 0.02
898 454 0.09
899 133 0.03
900 61 0.01
901 1 0.00
902 1 0.00
903 1 0.00
904 1 0.00
905 1 0.00
907 2 0.00
909 1 0.00
910 95 0.02
911 69 0.01
912 7 0.00
913 3 0.00
914 4 0.00
915 4 0.00
916 10 0.00
917 13 0.00
918 32 0.01
919 12 0.00
920 504 0.10
921 46 0.01
922 37 0.01
923 98 0.02
924 67 0.01
926 2 0.00
927 1 0.00
928 1 0.00
930 11 0.00
931 33 0.01
932 84 0.02
933 54 0.01
934 128 0.03
935 189 0.04
936 110 0.02
937 10 0.00
938 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGCAGCAG
GATCGGCAGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCCACCCTCTGGCTGGC
TGAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCCGGATCGGAACCGAGGGTTGCAAGCAGCACATGCTAGG
CCTGCGAAATGGTGCTGGGTGCCACAATTTTCTTGCACCGGGGCACCAATCGTGCGGAGAACCTG
ACCGGCGGCATTGGGGTTTCCAGATCGGGGGACCGGGGGGTGTGTGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTT
TTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAA
TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTCCCATGAAACT
TCACGTGAGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACTACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGTCCGCCTACCCGTTCGTTTCGTT
Found at i:5024394 original size:26 final size:26
Alignment explanation
Indices: 5024358--5024410 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5024348 GTTGACTTAG
5024358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5024384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5024410 G
1 G
5024411 ATCCGGATCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5025775 original size:26 final size:26
Alignment explanation
Indices: 5025739--5025791 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5025729 GTTGACTTAG
5025739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5025765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5025791 G
1 G
5025792 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5027443 original size:26 final size:26
Alignment explanation
Indices: 5027414--5027466 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
5027404 GTTGACTTAG
5027414 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
* ** **
5027440 GCATGCGGAGTTCATTCTTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5027466 G
1 G
5027467 ATTGGATGGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5029233 original size:26 final size:26
Alignment explanation
Indices: 5029197--5029249 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5029187 GTTGACTTAG
5029197 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5029223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5029249 G
1 G
5029250 ATGAGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5029324 original size:884 final size:879
Alignment explanation
Indices: 5027223--5029530 Score: 2730
Period size: 884 Copynumber: 2.6 Consensus size: 879
5027213 CCTGCCGGTT
5027223 CGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGAGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATAG-GAGTTCATT-CCAGTCTAAGATCAGA
* * * * * * * *
5027288 CCAGATCGAGGGTTGTGGCAGTAAGATCGGCAGTAGGTAGAGAATGACCCGACCGATCCCGAGCT
63 CCAGACCGAGGGTTGTGGCAGTAAGATCGGTAGCACGCAGAG-AGGACCCGACCGATCCCCAGCA
* * * * **
5027353 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCAAGGGTTGACTTAGGCAT
127 TGTGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
** * ** *
5027418 ACAAAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCTTAGTCTAAGATTGGATGGGA-TCGA
191 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TGGATCGGACT-GA
* * * * * * *
5027482 GGGTTACGGCAGCACATGCTTGGCTCGGGCTTGTTCTGGTGCCACATTTTTCTTCACCGGGGCAC
254 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGAGCAT
* * * * * *
5027547 CATCGTCGGTGCATCGTCGGAGAACCTAATCGACGGCATTGGGGTTCCGACGATCAGTGTGGCCG
319 CA-C--CAGAGAAT-GT----G-A-C----CGACGGCATTGGGGTTCCGACGATTAGGGGGGCCG
* *
5027612 GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
370 G-GGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATC
* *
5027677 CCTCATAAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCC
434 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5027742 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
498 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
5027807 CGAGTTTTTAGCTGAATATTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
563 CGAGTTTTTAGCTGAATATTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* *
5027872 GGGACAAAAACTCCTTCTGGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
628 GGGACAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
5027937 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
693 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGTATG
*
5028002 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
758 AATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5028067 CACCCTATCGATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGGGGTAGTGCCCGCC
823 CACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
* ** * * * *
5028124 CACTTGCCCGCTCGTTTCATCGATTGGCTTAGGCATATGGAGTTAATTCACAGTTTAAGATCAGA
1 CGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTC-CAGTCTAAGATCAGA
* * * *
5028189 CCAGACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGTGG----GACCCGAT---C-G-A
63 CCAGACCGAGGGTTGTGGCAGTAAGATCGGTAGCACGCAGAGAGGACCCGA-CCGATCCCCAGCA
* *
5028245 --T-C--CCCGCCCTTCTGACCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
127 TGTGCATCCCCCCCTT-TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
** * * * * *
5028304 ACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCGGACCAGTCCGAG
191 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACTGAG
* ** * * **
5028369 GGTTGCGAAAGCACATGCTGGGTTCGAGCATGTGCTGGTGCGTATTTTTCTTCGTCGGGGCACCA
255 GGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGC-CACATTT-TTC-T----------
* *
5028434 TCGCCGGAGCATCACCAGAGAATGTGACCGACGGCATTGGGGATCCGACGATTGGGGGGGCCGGG
307 TCGCCGGAGCATCACCAGAGAATGTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGGCCGGG
* * * * * *
5028499 GGGGTGTACGAACACGATGTGCGATGGGTGCTGGCACTTGCCCCTTATATTGTCCCCCTATCCCT
372 GGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCT
*
5028564 CATCAAACCTCGAGAATTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
437 CATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5028629 AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
501 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
5028694 GTTTTTAGCTGAATTTTTTTGTGCATGGC-AACAAAAATACAAGGATCACGTCTACCTAGTTTAG
566 GTTTTTAGCTGAATATTTTTGTGCAT-GCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT-G
* * *
5028758 GGCCAAAAAC-CTTTCTGAAAAAATTTTGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
629 GGACAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5028822 AAAAATAGAAAATGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGA
694 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGTATGA
* * * * ** **
5028887 GTTTATAGGGCATAAAAATGGCACTGGCATGTAGAAATATGAAGATGTGCCTAATTCCACCTACC
759 ATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
5028952 ACCCTATTGATCCACGACTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCC
824 ACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
*
5029008 CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGAC
1 CGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCAGTCTAAGATCAGAC
* * * * * * *
5029073 CGGACCAAGGATTGTAGCAGTAGGATCGATAGCATGCAGAGAGGACCCGACCGATCCCCAGCATG
64 CAGACCGAGGGTTGTGGCAGTAAGATCGGTAGCACGCAGAGAGGACCCGACCGATCCCCAGCATG
5029138 TGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
129 TGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
*
5029203 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGATTGGACTGAGGG
193 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATG-GATCGGACTGAGGG
* *
5029268 TTACGGCAGCACATGCGGGGCTCGAGCATGTGCTGATGCCACATTTTTCTTCGCCGGGGCACCAT
257 TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT---C---G------
* * ** * * ** * * *
5029333 CGTCGGAGCATCGCCAGAAAACCTGACCGACAGCGTTGGGGTTCCGGTGA-TCGGGGGTCC-AGG
310 C--CGGAGCATCACCAGAGAATGTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGGCCGGGG
* *
5029396 GGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCTCTATCCCTT
373 GGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTC
* * *
5029461 ATCAAACCTCGAGAACTCACACCCTCTTAAAAAACATTTGAGATTTTACAGGTTTGCTACCAGTA
438 ATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
5029526 GCCAT
502 GCCAT
5029531 AAAAATACCA
Statistics
Matches: 1187, Mismatches: 164, Indels: 117
0.81 0.11 0.08
Matches are distributed among these distances:
883 50 0.04
884 495 0.42
885 44 0.04
886 120 0.10
887 23 0.02
888 3 0.00
889 4 0.00
890 3 0.00
891 2 0.00
893 2 0.00
894 2 0.00
895 6 0.01
896 152 0.13
897 141 0.12
898 39 0.03
899 11 0.01
900 3 0.00
901 86 0.07
902 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (879 bp):
CGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGAGTTCATTCCAGTCTAAGATCAGACCA
GACCGAGGGTTGTGGCAGTAAGATCGGTAGCACGCAGAGAGGACCCGACCGATCCCCAGCATGTG
CATCCCCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGATCGGACTGAGGGTTAC
GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGAGCATCACCAGA
GAATGTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGGTGTGCGCACAAGATG
TGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
GTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCCTTCTGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
Found at i:5030034 original size:26 final size:26
Alignment explanation
Indices: 5030004--5030054 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5029994 TTCACCTAGG
* *
5030004 CATACTGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
5030030 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
5030055 GATGAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:5030924 original size:26 final size:26
Alignment explanation
Indices: 5030894--5030946 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5030884 GTTGACTTAG
5030894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5030920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5030946 G
1 G
5030947 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5031385 original size:881 final size:887
Alignment explanation
Indices: 5029531--5031581 Score: 2996
Period size: 881 Copynumber: 2.3 Consensus size: 887
5029521 CAGTAGCCAT
* * * *
5029531 AAAAATACCAGGATTACGTCTACCAAGTTTGGGGCCAAAAGTCTTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
5029596 TCTCGAACCGTAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
66 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5029661 TCATGTGAAGGCTTAAGGGACCAATGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGTAG
** * *
5029726 AAATATGAAGATGTGCCTAATTCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
5029791 TCTGGCCGGCGTTGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
261 TCTGACCGGCGTAGT---CG-CCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGT
* * ** * * *
5029856 TCATTCCCAGTCTAAGATCAGATCGGACCAAGGATTGTGGCAGTAGGATCGGCCGTACACAGAGG
322 TCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCAGCAGCAGGATCGGCAGCACACAGAGG
*
5029921 GGACCCGACCGATCCCTAGCATACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
387 GGACCCGACCGATCCCTAGCATACGCATCACACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
5029986 TTCATGGGTTCACCTAGGCATACTGAGTTCATTCCTAGTCTAACCATACGGAGTTCATTCCCAGT
452 TTCATGGGTTCACCTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGT
* * * * *
5030051 CTAAGATGAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCAC
517 CTAAGATGAGACCGAACCGAGGGTTGTGCCAGCACATCCTGGGCTCAAGCATCTGCTGGTGCCAC
* * *
5030116 ATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGA
582 ATTTTTCTTCACCGAGG--CCA---TC--A-CATCGCCGGAGAACCTAACCGACAGCATTAGGGA
5030181 TCCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
639 TCCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
* * * *
5030246 TCATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGA
704 TCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACA
* *
5030311 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTACAAATGGT
769 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTATTTACAAATGGT
*
5030376 CACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
834 AACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* * ** *
5030430 -AAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACGCCTTTTGGAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*
5030494 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
66 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
** * *
5030559 TCACGTGAAGGCTTAAGGGACCATTGTATGTGTTTATAGGCCATAAAAATGGCATTGGCACGTAC
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGTAG
5030624 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
5030689 TCT-ACCTGGCGTAGT-G-C-CC-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
261 TCTGACC-GGCGTAGTCGCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
** * * * * * **
5030749 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAGGATTGGTAGCATGCAGAGGGGG
325 TTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCAGCAGCAGGATCGGCAGCACACAGA-GGGG
* * **
5030814 ACCCGACCGATCCCTGGCTTGA-GCATCATGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
389 ACCCGACCGATCCCTAGCAT-ACGCATCACACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
5030878 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
453 TCATGGGTTCACCTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTC
** *
5030943 TAAGATCG-GACCGAACCGAGGGTTGTGCCAGCACATCCTGGGCTCGGGCATCTGCTGGTGTCAC
518 TAAGAT-GAGACCGAACCGAGGGTTGTGCCAGCACATCCTGGGCTCAAGCATCTGCTGGTGCCAC
** * * *
5031007 ATTTTTCTTCGTCGAGG-CA-C-CATCGCCGGAGAACCTAACCGGCAGCATTGGGGTTCCGACGA
582 ATTTTTCTTCACCGAGGCCATCACATCGCCGGAGAACCTAACCGACAGCATTAGGGATCCGACGA
* * *
5031069 TCG-GGGGGGCTGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
647 TCGAGGGGGTC-G-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATAT
*
5031133 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTTACATTTTAC
710 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACATTTTAC
*
5031198 AGGTTTGCTACGAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTATTTACAAATGGTAACAAA
775 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTATTTACAAATGGTAACAAA
* *
5031262 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
840 ATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* *
5031310 AAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
5031375 TCAT-GAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
66 TC-TCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
5031439 TTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGTA
* *
5031504 GAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
5031569 CTCTGGCCGGCGT
260 CTCTGACCGGCGT
5031582 GGCTTCCGCC
Statistics
Matches: 1040, Mismatches: 103, Indels: 36
0.88 0.09 0.03
Matches are distributed among these distances:
879 6 0.01
880 117 0.11
881 384 0.37
882 3 0.00
884 1 0.00
888 2 0.00
890 83 0.08
891 191 0.18
892 3 0.00
894 1 0.00
897 2 0.00
898 247 0.24
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGACCGGCGTAGTCGCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCAAGGATTGCAGCAGCAGGATCGGCAGCACACAGAGGGGAC
CCGACCGATCCCTAGCATACGCATCACACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
TGGGTTCACCTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAA
GATGAGACCGAACCGAGGGTTGTGCCAGCACATCCTGGGCTCAAGCATCTGCTGGTGCCACATTT
TTCTTCACCGAGGCCATCACATCGCCGGAGAACCTAACCGACAGCATTAGGGATCCGACGATCGA
GGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTCATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACATTTTACAGGTTT
GCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTATTTACAAATGGTAACAAAATATTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
Found at i:5032419 original size:26 final size:26
Alignment explanation
Indices: 5032383--5032461 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
5032373 GTTGACTTAG
5032383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5032409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5032435 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5032461 G
1 G
5032462 ATCGGACTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5035351 original size:26 final size:26
Alignment explanation
Indices: 5035321--5035376 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5035311 TGTGTTGACT
5035321 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
5035347 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
5035373 TAAG
1 TAAG
5035377 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:5036097 original size:26 final size:26
Alignment explanation
Indices: 5036061--5036111 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5036051 TGGCTTAGGT
* *
5036061 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
5036087 ATACGAAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
5036112 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:5036707 original size:718 final size:726
Alignment explanation
Indices: 5035326--5036736 Score: 2199
Period size: 718 Copynumber: 1.9 Consensus size: 726
5035316 TGACTTAAGC
* * *
5035326 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
1 ATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCG
* * * *
5035391 AGTGTTGCGGCAGCACATGCTGGGCTCTCGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCA
66 AGGGTTACGACAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCA
* * *
5035456 CCATCATCAGAGCATCGTCGGTGAACTTGACCGGCGGCATTGTGGTTCCGACGATCGGGGGGGCC
131 CCATCATCAGAGCA------G-GAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * *
5035521 AGGGGGGTCGTGCGCACATGATGTATGGTGGGTGGTGGTACTTAGCCCTTATATTGGCCTCCTAT
189 A-GGGGG-CGTGCACACATGATGTACGATGGGTGGTGGTACTTAGCCCTTATATTGGCCCCCTAT
* *
5035586 CCCTAATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGACATTTTACAGGTTTGCTGC
252 CCCTAATCAAACCTCAACAACTCACACCCCCTTAAAAAGCATTTGACATTTTACAAGTTTGCTGC
5035651 CAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
317 CAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** *
5035716 TAGAGTTTTTAGCTTAATTTTTTTGTGTGTGCCAAAAAAAAATACAAGGATCATGTCTACCAAGC
382 TAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGC
* ** *
5035781 TTGGGGCCAAAACTCCTTCTGAAAAAATTTCAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATT
447 TTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATC
* * *
5035846 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCATGTGGAGGCTTAAGGGACCATTGTA
512 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
5035911 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCT
577 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCT
* * *
5035976 ACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCTGTCCGCCCGTCCGCCTGCTCG
642 ACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCTGTCCGCCCGTCCGCCTGCTCG
5036041 TTTTGTCGGTTGGCTTAGGT
707 TTTTGTCGGTTGGCTTAGGT
*
5036061 ATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCG
1 ATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCG
* * * *
5036126 AGGGTTACGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGCTGGGGC-
66 AGGGTTACGACAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCA
*
5036190 CCATCATC-G-G-A-GAACCTGACAGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCA-GGGG-
131 CCATCATCAGAGCAGGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGC
* * *
5036249 GTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
196 GTGCACACATGATGTACGATGGGTGGTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTAATCA
* * *
5036314 AACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA
261 AACCTCAACAACTCACACCCCCTTAAAAAGCATTTGACATTTTACAAGTTTGCTGCCAGTAGCCA
* *
5036379 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
326 TTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTT
* * * *
5036444 TAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGGCA
391 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCA
* * * * *
5036508 AAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
456 AAACTCCTTCCGAAAAAATTTCAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
5036573 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
521 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
5036638 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
586 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTA
5036703 TCGATCCACGGCTAGCGCATCCCGTCTCTCTGGC
651 TCGATCCACGGCTAGCGCATCCCGTCTCTCTGGC
5036737 CGGCGTAGTG
Statistics
Matches: 622, Mismatches: 54, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
718 248 0.40
719 202 0.32
721 4 0.01
723 40 0.06
731 1 0.00
732 1 0.00
733 1 0.00
734 8 0.01
735 117 0.19
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (726 bp):
ATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCG
AGGGTTACGACAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCA
CCATCATCAGAGCAGGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGC
GTGCACACATGATGTACGATGGGTGGTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTAATCA
AACCTCAACAACTCACACCCCCTTAAAAAGCATTTGACATTTTACAAGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCA
AAACTCCTTCCGAAAAAATTTCAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCTGTCCGCCCGTCCGCCTGCTCGTTTTGTCGG
TTGGCTTAGGT
Found at i:5036965 original size:26 final size:26
Alignment explanation
Indices: 5036929--5036979 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5036919 TGACTTAGGC
*
5036929 ATACGGAGTTCATTCCCATTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
5036955 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
5036980 ATCAGAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:5037076 original size:11 final size:11
Alignment explanation
Indices: 5037060--5037092 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
5037050 ACCGGGGCAC
5037060 CATCGTCGGAG
1 CATCGTCGGAG
5037071 CATCGTCGGAG
1 CATCGTCGGAG
5037082 CATCGTCGGAG
1 CATCGTCGGAG
5037093 AACCTGATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:5038299 original size:898 final size:892
Alignment explanation
Indices: 5036036--5038756 Score: 3749
Period size: 898 Copynumber: 3.1 Consensus size: 892
5036026 CCGTCCGCCT
* * * * *
5036036 GCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
5036101 CCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTTGGCTCGGGCATGTGTTGG
66 CCCAGTCTAAGATCAGA-CAGAACGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGG
* * *
5036166 TGTCACATTTTTCTTCGCTGGGGC-CCAT--------CA---TCGGAGAACCTGACAGGTGGCAT
130 TGCCGCATTTTTCTTCGC-GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGGTGGCAT
* * * *
5036219 TGGGG-TTCCGACGATCGGGGGGGCCA-GGGG-GTGCACACATGATGTGCGATGGGTGGTGGTAC
194 TGGGGTTTCAG-CGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTAC
* *
5036281 TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGACAACTCACACCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
5036346 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
323 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
5036411 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
5036476 TACAAGGATCACGTTTACCAAGTTTGGGGGCAAAACTCTTTCCGAAAAAATTTTAAAAAAT-CTC
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-
5036540 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
517 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
5036605 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
582 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
*
5036670 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTG
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * **
5036735 GCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATGCAGACCTCAT
712 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
5036800 T-CTAGTCTAAGATCGAACC-AGACCAAGGGTTGCGGTAGCAGGATTGGCAGCAGGCA-AAGGG-
777 TCCTAGTCTAAGATCGGACCGA-ACCATGGGTTGCGGTAGCAGGA-TCGCAGCACGCAGAGGGGA
*
5036861 ---G---GA----CTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCAC
840 CCCGATCGATGCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
5036904 GCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGGATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* **
5036969 CCCAGTCTAAGATCAGA-ACGGACTGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTG
66 CCCAGTCTAAGATCAGACA-GAAC-GAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTG
*
5037033 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCT
129 GTGCCGCATTTTTCTTC-GCGGGGCACCATCG-C----CA------GAGCATCGTCGGAGAACCT
* * * * *
5037098 GA-TCGGTGGCATTAGGGTTCCGGCGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGTG-AA
182 GACT-GGTGGCATTGGGGTTTCAGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGA
* *
5037161 TGGGTGCTAGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
245 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5037226 CCCTTAAAGAGCATTTGAGATCTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
310 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
5037291 GACACTTTTTTCAAATGGTCACAAAAT-TTGGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
375 GACACTTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5037355 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTCCCAAAAAAAT
439 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * *
5037420 TTTAAAAAATCCTGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGC
504 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
5037485 CATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
569 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
5037550 GGCGCATAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCA
634 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * *
5037615 TCCCGTCTCCCTAGTAGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGC
699 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
5037680 ATACGGAGTTCATTCCTAGTTTAAGATCGGACCGAACCATGGGTTGCGGTAGCAGGATCAGCAAC
764 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCATGGGTTGCGGTAGCAGGATC-GCAGC
* * *
5037745 ACGCAGACGGGGACCCGATCGATCGTCGGCTTGCGCATTCCGCCCCACTCGCCGGCTGAGCGCCC
828 ACGCAGA-GGGGACCCGATCGAT-G-C-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
5037810 GCAC
889 GCAC
* *
5037814 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGGTCTAAGCCTATGGAGTTCAT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCAT
* * *
5037878 TCCCAGTCTAAGATCGGACTAGAACGAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
65 TCCCAGTCTAAGATCAGAC-AGAACGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTG
* * **
5037943 GTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGACGGCA
129 GTGCCGCATTTTTCTTCG-CGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGGTGGCA
5038008 TTGGGGTTTCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GTAC
193 TTGGGGTTTCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTAC
*
5038072 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
5038137 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
323 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
5038202 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
5038267 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGTCTTCCAAAAAAAGTTTAAAAAATCCC
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCT
* ** * *
5038331 AAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
517 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* **
5038396 GTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCCGAAAT
582 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * *
5038461 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGATTGCGCATCTCGTCTCTCTG
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** * *
5038526 GCCGATGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
712 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
5038591 TCCTAGTCTAAGATCGGACCGAA--GTGAAGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGG
777 TCCTAGTCTAAGATCGGACCGAACCATG--GGTTGCGGTAGCAGGATCG-CAGCACGCAGA-GGG
* * * *
5038654 GACCC-AGTCGATGCCCAGCTTGCACATCCCGCCCCTTTGGCCGGCTGAGCGCCTGCAT
838 GACCCGA-TCGATG--C-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
5038712 GCTTGTTTTGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
5038757 GCAAGATCGG
Statistics
Matches: 1628, Mismatches: 159, Indels: 102
0.86 0.08 0.05
Matches are distributed among these distances:
867 2 0.00
868 128 0.08
869 5 0.00
888 2 0.00
891 38 0.02
892 6 0.00
893 494 0.30
894 62 0.04
895 2 0.00
896 5 0.00
897 4 0.00
898 632 0.39
899 62 0.04
900 2 0.00
903 2 0.00
905 2 0.00
909 4 0.00
910 172 0.11
911 3 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACAGAACGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGGTGGCATTG
GGGTTTCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
AGTCTAAGATCGGACCGAACCATGGGTTGCGGTAGCAGGATCGCAGCACGCAGAGGGGACCCGAT
CGATGCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:5041578 original size:26 final size:26
Alignment explanation
Indices: 5041542--5041602 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
5041532 GTTGACTTAG
*
5041542 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5041568 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5041594 G-AT-CAGAGT
1 GCATACAGAGT
5041603 AGACCGTGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 26 0.76
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5043173 original size:26 final size:26
Alignment explanation
Indices: 5043137--5043189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5043127 GTTGACTTAG
5043137 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* *
5043163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
5043189 G
1 G
5043190 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:5045865 original size:26 final size:26
Alignment explanation
Indices: 5045835--5045885 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5045825 TGACTTAGGT
*
5045835 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
5045861 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
5045886 ATCGCACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:5047605 original size:26 final size:26
Alignment explanation
Indices: 5047568--5047620 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5047558 GCTGGCTTAG
*
5047568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5047594 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5047620 G
1 G
5047621 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5048345 original size:26 final size:26
Alignment explanation
Indices: 5048306--5048355 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
5048296 GGCTTAGGCA
*
5048306 TACGGAGTTAATTCCCCGTCTAAGCG
1 TACGGAGTTAATTCCCAGTCTAAGCG
* *
5048332 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
5048356 ATAAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCG
Found at i:5048704 original size:26 final size:26
Alignment explanation
Indices: 5048665--5048724 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
5048655 GTTGACTTAG
5048665 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
* * *
5048691 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
5048717 G-AT-CAGAC
1 GCATACAGAC
5048725 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:5050494 original size:26 final size:26
Alignment explanation
Indices: 5050458--5050510 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5050448 GTTAACTTAG
5050458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5050484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5050510 G
1 G
5050511 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5051391 original size:26 final size:26
Alignment explanation
Indices: 5051362--5051412 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5051352 TGACTTAGGG
* *
5051362 ATACGGAGTTCATTCCGAGTCTAAGT
1 ATACGGAGGTCATTCCCAGTCTAAGT
*
5051388 ATACGGAGGTGATTCCCAGTCTAAG
1 ATACGGAGGTCATTCCCAGTCTAAG
5051413 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
ATACGGAGGTCATTCCCAGTCTAAGT
Found at i:5053187 original size:26 final size:26
Alignment explanation
Indices: 5053137--5053189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5053127 GTTGACTTAG
* *
5053137 GCATACGGAGTTCATTTCGACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
5053163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
5053189 G
1 G
5053190 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:5053487 original size:900 final size:896
Alignment explanation
Indices: 5042042--5056610 Score: 11618
Period size: 900 Copynumber: 16.1 Consensus size: 896
5042032 ATCCCGCACT
* * * * *
5042042 CCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
5042107 GACC-AGACCGAGGGTTGCAGCAGTAGGATTGGCATCACACAGAGAGGAACCCGG-CTGATTGCC
66 GACCGA-ACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTC-GA-TCCC
* * * * * * * *
5042170 AGCTTGCACATCCCTCCCCTTTGGCCGGTTGAGCGCCTTGGATGCTCGTTTCGTGGGTTGACTTA
128 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC-CGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * * * * *
5042235 GGCCTACGGAGATCACTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTATAAAATTGAACCAGA
192 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * ** *** ***
5042300 CCGAGGGTTCGCGGCAGCACATGCAGGGCTTAGGCATGTGCTGGTGAAACATTTTTCTTCACCAG
257 CCGAAGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTGG
* *
5042365 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGG
320 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGG
* *
5042430 GGCCGGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
384 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
5042495 ATCCCTCATCACACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
449 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
5042560 GCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAAATCTTGTACA
514 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
5042625 CTACGTGTTTTTAGCTGAATTTTTTTGTGCACGCCAAGAAAAATACAAGGATCACGTCTACCAAT
579 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * * * * **
5042690 TTTAGGGCTAGAACTCCTTTCAAAAAAATTTTAAAAAAATCCCGAACTGCAAAAAGCTTCAAAAA
644 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
*
5042755 TCGTGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
708 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
5042820 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
5042885 CTAGCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAGCGCCCG
838 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
5042944 CCCGCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAAATCG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *** * * * *
5043009 GACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGA
66 GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCCGG
* * * * * *
5043074 CTTTCGCATCCCGCCCCTCTGGCCGGTTGGGCACCCGCACGCTCATTTCATGGGTTGACTTAGGC
130 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
5043139 ATACAGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * ** **
5043204 AGGGTTGCAGTAGCACATGCTGGGCTTGAGCATGTGCTGGT-CCTGCATTTTTCTTCACCGACGC
260 AAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTC-GTGGGGC
* *
5043268 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCAGGAGGG
323 ACCATCGCCGGAGCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCG-CGATC-GGGGGG
* *
5043332 GCCGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
385 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * **
5043397 TACCTCATGAAACCTCGAGAAATCACACCCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5043462 CCAGTAGCCATTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAATGGTCACAAAAACTTGTACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* ** * * *
5043527 TTCGACTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCATGTCTACCAGGT
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
5043592 TTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
645 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
* * * *
5043657 ATGAAAACTAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTA
710 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5043722 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCATAAACTCACCT
775 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
5043787 ACCACCCTATCGATCCATGGCTTACGCATCACGTCTCTCTGGCCGACGTAGTGCCTGCCCA
840 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG
* * * * *
5043848 CCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * * * * * *
5043913 GACTGGATTGATGGTTGTAGCAGCAAGATCGGTAGCACACAAAGGGGGACCCAG-CGGATCCCCG
66 GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTC-GAT-CCCG
* * * * *
5043977 GCTTGCGCATCCAGCCCCTTTAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
129 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
5044042 CATACGGAGTTCATTCCCATTGC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
194 CATACGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
5044106 C-AAGGGTTACGACAGCACGTGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-----G
258 CGAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGGGG
* * * * ** * *
5044165 ---C-T----AGAGCATCGCCAGAGAACTTGACTGGTGGCATTAGGGTTTCGACGATCGGGGGGG
322 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGG
* *
5044222 CCGGGGGGGTGTACGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
386 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
5044287 TCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5044352 CCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTATACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
5044417 TTCGAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAAAATATACAAGGATCACGTCTACCAAG
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAG
* * * **
5044482 TTTAGGGCCAAAGCTCTTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
644 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
** ** * *
5044546 TATGAAAAATAGAAAACGAGTCGTCTTGAAATGCAACTTCACGTGAAGGCTTAAAGGACCATTGT
709 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
5044611 ATGAATTTACAAGCCATCAAAATGGC-TTCGGCACACAGAAATATGAAGACGTGCCTAAAACCCA
774 ATGAATTTACAAGCCATAAAAATGGCATT-GGCACGTAGAAATATGAAGATGTGCCT-AAACCCA
* * * *
5044675 CCGACCACTCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCG
837 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG
* * * * * * *
5044739 CCTGCCCGTCCGCTCATTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
5044804 GACC-AGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGAGGGATCTGGCCTATCCCTG
66 GACCGA-ACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC-G
* * * * *
5044868 GCTTGCACATCCCACCCCTCTGGTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGG
129 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * **
5044933 CATACGGAGTTCATTCCCAGTCAAAGCATACGAAGTTCATTACCAGTCTAAGATCGGATTGGACC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** ** ***
5044998 -AAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCAGGG
259 GAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTGGGG
* * *
5045062 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG
322 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGG
* * * *
5045127 CCGGGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCACTA
386 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5045192 TCCCTCATCAAACCTTGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
450 TCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
5045257 GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCATAAAATCTCGTACA
514 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
5045322 CTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCGAAAAAAATACAAGGATCACGTCTACCACG
579 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
5045387 TTTAGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAAT
644 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
* * *
5045452 -ATAGAAAAATAGAAAACGAGTTGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTG
709 CGT-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * ** * *
5045516 TATGAATTTACAAGCCATAAAAATGGCACTAGCACACAGAAATACGAAGATGTGCCTAAACACAC
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
5045581 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC-CCCTA-TCCCGCCCG
838 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCG
* * *
5045641 CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * ** * *
5045706 GACC-AGATCGAGGGTTAC-GATAGCAGGATCGATAGCATGTAGAGGGGGACCCGGTCGATCCCC
66 GACCGA-ACCGAGGGTTGCAG-CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCC
* * **
5045769 GGCTTGCGCATCCCGCCCCTC-GGCCGGCAGAGCGCCCGC-CTGCTCGTTTCATGCCTTGACTTA
128 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTA
* * * *
5045832 GGTATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACTGGA
192 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * *
5045897 CCGAGGGTTGCGGTAGCACATGCTGGGCACGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGG
257 CCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGG
* * * * * *
5045962 GCACCATCGTCAGAGCATCGTCGGAGAACTTGACCGACGGCATTAGGGTTTCGACGATCGGGGGG
321 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGG
* *
5046027 GCCGGGGGGCGTGTGCCCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
385 GCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
5046092 TATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGC
448 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
5046157 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTC
513 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
5046222 ACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * ** * *
5046287 GTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAATTTC-ACACTGT-AAAA-TTTTCAAA
643 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA-ACCGTAAAAAGTTTT-GAA
* *
5046349 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAATGCTTAAGGGACCAT
706 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
5046414 TGTATGAATTTACAAGCCATAAAAAT-GC--TGCCATGCATAAATATGAAGATGTGCCTAAACCC
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * * *
5046476 AGCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCG
836 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* *
5046537 CCCG--C-CCC-CTCGTTTCATCGGTTGGCTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * ** ** *
5046598 GACC-AGACCGAGGGTGGCGGTAGCAGGATCGGCAGCACGCAGAGGTGGACCCTATAAATCCCCA
66 GACCGA-ACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCCG
* * * *
5046662 GCTTGCGCATCCCGCCCCTCTGACAGGCTTG-GCGCCTGCACGTTCGTTTCGTGGGTTGACTTAG
129 GCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5046726 GCATAAGAAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC----A---GA-CTGA-
193 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
*
5046768 -G--GTTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
258 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGG
* * * *
5046830 CACCATCGTCGGAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
322 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGG
* * * *
5046895 CCGAGGGGCTGTGCAG-ACATGATGTGC-ATTGGATGCTGGTACTTGGCCCTTATATTGGTCCCT
386 CCG-GGGGGTGTGC-GCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * **
5046958 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTAT
448 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
5047023 TGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
513 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
5047088 ACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAGAAAATACAAGGATCATGTCTACCAA
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *** * **
5047153 GTATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATTTTGAACTGTAAAAAGTTTCAAAAA
643 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
*
5047218 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
708 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
5047283 TATGAATTTACAAGCCATAAAAATGG---TGGCATGCAGAAATATGAAGATGTGCCTAAACCCAG
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
5047345 CTACCACCCTATTGATCCACGGCTTGCGCAACCAGTCTCTCTGGCCGGCGTAGTGCCCG
838 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
*
5047404 CCCGCCCATTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACTGG-GTTCATTCCCAGTCTAA
1 CCCG-CC---CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
** * * * * * * * **
5047468 GATCATACCGGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGTGGGGGACCCGACCGATC
61 GATCGGACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-
5047533 CCCGGCTTGCGCATCCCG-----C---CC--CT-----------CG---G---C-T--G--G-CT
125 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
5047565 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTG
190 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * *
5047630 GACCGAGGGTTGTGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATATTTCTTCGTCG
255 GACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-G
*
5047695 GGG---CA----C----CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
319 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGG
* *
5047749 GTGCCGAGGGCGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
383 GGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
5047814 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTT
446 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
5047879 GCTGTCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
511 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
5047944 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATCCAAGGATCACGTCTACC
576 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * ** **
5048009 ATGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTCAAA
641 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
5048074 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAT
706 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
5048139 TGTATGTATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAATATGTGCCTAAACCC
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
*
5048204 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCTG
836 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG
* * *
5048269 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCCGTCTAAG--CG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** *
5048332 TA-CG----GA--GTT-CATTCCTAGTCTAAGAT---AAG-AC-CAGA--CCGA--AGGT---T-
66 GACCGAACCGAGGGTTGCA--GC-AG-C-AAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * * ** * * * * * * ** *
5048376 GCGGCAT-CACATGCTAG--GCT-TGGGCAAGTACTG-GTG-CCGTA--TTTTTCTTCATTGGG-
126 CCGGCTTGCGCAT-CCCGCCCCTCT-GGC-CG-GCTGAGCGCCCGCACGCTCGT-TTC-GTGGGT
* * * * ** * * * *** *
5048432 -G-C--A-CCATCGCAGGAGCATCGTT-GGAG---AA-CCTGACCGGCG-GCATT-GGGGTTCCA
185 TGACTTAGGCAT-AC-GGAG-TTCATTCCCAGTCTAAGCAT-A-CGGAGTTCATTCCCAG-TCTA
* ** * * ** ** * * * ** *
5048485 GCGATCGG-GGGGGCCGAGGGGGGTCTACA-CACATGACGTGTGATGGGTGC-TGGTATTTG-GC
244 -AGATCGGACCGGACCGAAGGTTG-CGGCAGCACATG-C-TGGGCTCGG-GCAT-GTGCTGGTGC
** * **** * * *
5048546 C-C-TTATATTGGCCCCCTATCCCTTATCATACAGCTAGG-G-A-C-CC-G-G---CTGATCC-C
303 CGCATT-T-TT--CTTCGTGGGGC--ACCAT-C-GC-CGGAGCATCGCCGGAGAACCTGA-CCGA
* ** * * * ** * * * **** * * * *
5048599 CGGC-TTACGTATCCCGCCCCA-CTGGCCGG-CTGAGCGCCCCCACAC-TCGTTTCGTGGGTTGA
358 CGGCATT-GGGGTTCCG--CGATCGGGGGGGCCGGGGGGTGTGCGCACAT-G-AT-GTGCGATG-
** * ** ** ** **** *
5048660 CTTAGGCATACAG-ACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
416 GGT--GC-T--GGTACTT--GGCCC--T-T----ATATTG-G--C-CCCCTA-TCCCTCATCAAA
* ** * * * * * * * * **
5048724 CCAGACCGAGGGTTGCGGCAGCACATGCTGCACTTGGGCATGTGC-TGGTGCCGTATTTTTCTTC
462 CC---TCGA--G-AAC-TCA-CAC---C--CCCTT---AAAGAGCAT-TTG-AG-ATTTTAC-AG
* * ** *** ** * * *
5048788 GTTGGGGCACCAT-CGCAGGAGCATCATTGGAGAACCT-AACCGACGG-CA-TTGGGGTTCCACC
507 GTT--TG---C-TGC-CAGTAGC--CATTAAAGTGTCTGAAATG-GGGACACTT---TTTTCA--
* ***** ** * ** * * * ** * *
5048849 GATCGGGGGGGTCGAGGGGGGTC-TGCGCACAT-GATGTGTGATGGGTG-CTGGTATT-TGC--C
557 AAT------GGTC-A-CAAAATCTTGTACACTTCGA-GT-TTTTAGCTGAATTTTTTTGTGCATG
** * ***** **** * * ** ** * ** *
5048908 CCTTATATTGGCCCCCTATC-CCT-TATCAAACCTTGAGAACTC-ACAC-CC-TCTTAAAGAGCA
612 CCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTG-GGGC-CAAAACTCCTTCCGAAA-A-AA
* * *** * * **** ** ** * *** ** *
5048968 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT-AAAGT-GTCTGAAAT-GGGAAC-A--CTT
672 TTTTAAAAAATCCCGAACCG-TA--AAAAG-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * ** *** * ** * * * *
5049027 TTTTCAAATAGTCACAAAATCTTGAACACTTCAA---A--TTTTTAACTGAATTTTTTTGTGCAC
733 CTTGC-CAT-GAAACTTCA-CGTGAAGGCTT-AAGGGACCATTGT-A-TGAA-----TT-TACAA
* * * * * * * * *
5049087 GCCAACAAAAAT-ACA-AGGATCACGTCTACCAAGTTTG--G--G-GCC-AAA-ACTCCTTCCAA
786 GCC-ATAAAAATGGCATTGG--CACG--TA-GAAATATGAAGATGTGCCTAAACCCACCTACC-A
**** ** *** *** * * **** * ****** ** ****
5049143 AAAAATTTAAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACG
844 CCCTATCGATCCACGGCTTG---CGCATCCCGTCTCTCTGGCCG-G---CGTAGTGCCCG
** ** * ** ** * ** * *
5049203 AGTCGTCTTGCCATGAAAC--TTCA-CGTGAAGGCTTAAGGGTCCATTA--TA-TGAATTTACAA
1 -CCCG-CCCGCC-CG-CTCGTTTCATCG-GTTGGCTT-A-GG--CA-TACGGAGTTCA-TTCCCA
* * * *** * * * ** * * * * * ******
5049262 GCCATAAAATTGGTGTTG-GCAC-A---TAGAAATATG-AAAATAAGCCTA-AACCCA-CCTACC
55 GTC-TAAGATCGG-ACCGAAC-CGAGGGTTGCAGCA-GCAAGAT-CGGC-AGCACGCAGAGGGGG
** * ** * * *
5049319 ACCCTATCGATCTACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCT
114 ACCCGGTCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCG--G--CTG--AG--CGCCCG-C-
* * * * * * *
5049384 ACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGAA
168 A--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-CGGA
* ** * * * * * ** * *
5049449 CTGAAGGTT-ACAGTAGTAGGATCGGTA--GCACCCAAAGGGGGACCCGACAG-ATCCTCGACTT
228 GTTCA--TTCCCAGT-CTAAGATCGG-ACCGGA-CCGAAGGTTG---CGGCAGCA-CAT-G-C-T
* ** * * * *** * *
5049510 GCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCA-CACTCGTTTCGTGGGTTG-A-CTTAGGA
281 GGGC-T--CG-GGC-AT-G--TGCTG-GTG-CCGCATTTTTC--TTCGTGGG--GCACCAT-CG-
* * *** * * * *** *** **
5049572 ATACAGAGTTCATTC-CCAGTCTAAGCAT-A-GGA-GTTCATTCCCAG-TCTAAGATCGGATTGG
330 --CCGGAG--CA-TCGCC-GGAGAA-CCTGACCGACG-GCATT-GGGGTTCCGCGATCGG-GGGG
* ** * * * * *** * *** * *
5049632 ACCAAGGGTTGCTGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGC-T-GTATTTTTCTTCGTC
385 GCCGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTAT-AT--T-
* * * * * * ** ** * * *
5049695 GGGGCACC-ATCACCGT-AGC-ATCGTCAGGGAAC-CTA-ACTGGCGGTATTAG-G-GTTCCGAC
441 -GGCCCCCTATC-CC-TCATCAAACCTC-GAGAACTC-ACAC-CCCCTTA-AAGAGCATT-TGA-
***** * * * * *
5049753 GA-TCGGGGGGTGTGC-GCACA-T-G--ATGT-ACGATGGCTGCAGGTACT-GGG-CCCTTATAT
497 GATTTTACAGGTTTGCTGC-CAGTAGCCAT-TAAAG-TGTCTG-A---AATGGGGACACTT-T-T
* ** ** ** ** ***
5049809 TGGCCCGCTAT-CCCACATCAAACCTCGAGAACTCACAC-TC-CCTTAAAGAGCATTTGACATTT
553 T---TC-AAATGGTCACA--AAA--TCTTG---T-ACACTTCGAGTT-TTTAGC---TGA-ATTT
** * * * * ** * *
5049871 TACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GA
601 T-----TTTG-TG-CA-T-GCCAAAAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGG
* ** *
5049931 TCGCAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATTACA
650 GC-CAAAA-C---T-C-CTTCCGA------A----AA---AATT-T---T----AAAAAA-T-CC
* * * ** * * *
5049995 AGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTCAAAAAAAATTTAAAAAAATCTTGAACCG
685 CGAAC-CG--TAAAAAGTTT--TG--AAAA-T-CGT--GAAA-----------------------
* *
5050060 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTACCATGAAACTTCACGTGAAG
716 ----AA---T-----A------------GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
5050125 GCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAAG
757 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* *
5050190 ATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
822 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
5050255 GTAGTGCCCG
887 GTAGTGCCCG
* * *
5050265 CCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCA-TACTAAGATC
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATC
* * * * **
5050329 AGACCGAACCGAGGGTTGC-GATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
65 GGACCGAACCGAGGGTTGCAG-CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCC
* * * * * *
5050393 TGCTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCGCGCGCTCGTTTCTTGGGTTAACTTAG
128 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
5050458 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAG
193 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
5050523 CGAGGGTTGCGGAAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
258 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGG
* *
5050588 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
322 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGG
** * * * * *
5050653 TTAGGGGGGTGTGTGTGCCCATGATGTGCAATGGGTGCCGGTACTTGGCCCTTATATTTGCCCCC
386 --CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
5050718 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGC
448 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
5050783 TGCCAGTAGCCATTAAAGGGTCTGAAATGGGGACACTTTTTTCAAGTCGTCACAAAATCCTGTAC
513 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
5050848 ACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAAATGCAAGGATCACGTCTACCA
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCA
* * * *
5050913 AGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAATCGCAAAAA-TTTTGAAA
642 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
* * * **
5050977 ATTGTGAAAAATAGAAAATGAGTCATCTTG-CATTGAAACTTCACGTGAAGGCTTAAGGGATTAT
707 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * * *
5051041 TGTATGAAATTACGAGCCATAAAAATGGCACTGCCACGTAGAAATATGAAGATGTCCCCAAACCC
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* *
5051106 ACCTACCACCCTATCGATCCACGGCTTGTGCATCCGGTCTCTCTGGCCGGCGTAGTGCCCG
836 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
5051167 CCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * * * * * *
5051232 GATCGAATTGAGGGTTGCGGCAGCAAGATTGTCAGCAGGCAGAAGGGGACTCGGTCGATCCTCGG
66 GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC-CGG
* * * * * *
5051297 CTTGCGCATCCCACCCCTCTGGCAGGCTGAACGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGG
130 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
5051362 ATACGGAGTTCATTCCGAGTCTAAGTATACGGAGGTGATTCCCAGTCTAAGATCGGACCGGATCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
5051427 AAGGTTACGGCTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTGGGGT
260 AAGGTTGCGGC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGC
5051492 ACCAT---C---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC
323 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGGC
* ** *
5051545 CTACGGGGGTGT-CGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCTCCTA
387 C--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
5051609 TCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5051674 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
5051738 TTCGATTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGT
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * *
5051803 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGGACCGTAAAAACTTTTGAAAATC
645 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
*
5051868 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTA
710 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5051933 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCT
775 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
5051998 GCCACACTATCGATACACGGCTTGCGCATCCCGTCTCTTTGGTCGACGTAGTGCTCGCG
840 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C-CG
* * * *
5052057 CGCGCGCCCTCCCGCTCGTTTCATCGGTTCGCTTAGGCATACTGAGTTCATTCTC-GATCTAAGA
1 C-C-CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGA
* * * * * * **
5052121 TCGAACTCG-ACCGAGGGTTGC-GACAGTAGGATTGGCAACATGCAGAGGGGGACCCGACCGATC
63 TCGGAC-CGAACCGAGGGTTGCAG-CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-
* * * * *
5052184 CCCCGCTTGCTCATCCCTCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
125 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
5052249 TAGGCATAC-AATGTTCATTCCCAGTCTAACCAAACGAAGTTCATTCCTAGTCTACGATCGGACC
190 TAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
5052313 GGACCG-AGGTTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGT
254 GGACCGAAGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
5052377 CGGGGCACCATCGCC---G-A-------AGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGG
318 -GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGG
* *
5052431 GGGGGCC-AGGGG-GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
381 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
5052494 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTATAGGTTT
446 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
5052559 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGT
511 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
5052624 ACACTTCGAGTTTTTAGTTAAATTTTTTTTTGCATGCGAAAAAAAATACAAGGATCACGTCTACC
576 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** * * **
5052689 AAGTTTGGGATCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCGGAACCACAAAAAGTTTTGAA
641 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* *
5052754 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTGACGTGAAGGCTTAAGGGACCAT
706 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
5052819 TGTATGAACTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGGGCCTAAACCC
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * *
5052884 ACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCG
836 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * *
5052945 TCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
5053010 AACC-AGACCGAGGGTTGCAGCAGCAAGATTGGCAGTAGGCAGAGGGGGACCCGGTCGATCCCGG
66 GACCGA-ACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCGG
* * * *
5053074 CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGC
130 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
5053139 ATACGGAGTTCATTTCGACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
5053204 AAGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCTGGGGCA
260 AAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCA
***
5053269 CCATCATTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC
324 CCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCC
* *
5053334 GGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 --GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
5053399 CCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGTGCATTTGAGATTGTATAGGTTTGCTGC
451 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5053464 CAGTAGCCATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAATTGTCACAAAATCTTGTACACT
516 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
5053529 TTGAGTTTTTAGCTG-ATTGTTTTTGTGCAAGCCAAAAAAAATACAAGGATAACATCTACCAAGT
581 TCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * **
5053593 TTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATC
645 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
*
5053658 GTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
710 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5053723 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCT
775 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
*
5053788 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
840 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * ** * * *
5053845 CCCGCCTGCCCACTCGTTTCGTTAGTTGGCTTAGGCATATGGAGTTCCTTCCCAGTCTAAGATTG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * * ** * * * * *
5053910 GACCGCACTGAGGGTTGTGGCAACAGGATCGATAGCATGCGGA-GGGTACCTGGCCGATTCCCGG
66 GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGA-TCCCGG
* * * * * *
5053974 CTAT-CGCATTCCGCTCCTCTGGCCAGCTGAGCGCCCACACACTCGTTTCGTGGGTTGACTCAGG
130 CT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
5054038 CATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * ** **
5054103 GTAGGTTGCAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGATGC
259 GAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGC
* *
5054168 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC
323 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGC
* * *
5054233 CGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTAGGCCCTTATATTGGCCCCCTATC
387 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5054298 CCTCATAAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
452 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5054363 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-T
517 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
5054427 CTGAGTTTTTAGCTGAATTATTTTATGGATGCCAACAAAAATACAAGGGTCACGTCTACCAAGTT
582 C-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5054492 TGGGGCCAAAAATTCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCA
646 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCG
*
5054557 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTAT
711 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
5054622 GAATATACGAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTA
776 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
5054687 CCACCTTATCAATCCACGGCTTGCGCATCCCGTCTCTTTGGTCAGCGTA--G--CG
841 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
5054739 CCCGACCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
5054804 GACCGAACAGAGGGATACAACAGCAAGATCGGCAGCACAG-AGAGGGGGACCTGATCGATCCTCA
66 GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCAC-GCAGAGGGGGACCCGGTCGATCC-CG
* * * *
5054868 GCTTGCGCATCCCGCCCCTCTGGTCGGCTTAGCGCCCGCACGCTCGTTTTGTGGGTTAACTTAGG
129 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
5054933 CATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCTCAG-CTTAAGATCGGACCGGAC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC-TAAGATCGGACCGGAC
* * * * * * * *
5054997 TGAGGGTTGTGGAAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCTGCATTTTTCTTCGCGGGGG
258 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGG
* * * * * * * *
5055062 TACCATCGTCGAAGCATTGCCGGAGAACCTGACTTG-CGACATTGGGGTTCTGACGATCTGGGGG
322 CACCATCGCCGGAGCATCGCCGGAGAACCTGAC-CGACGGCATTGGGGTTCCG-CGATCGGGGGG
* * *
5055126 GTCGGGGGGTGTGCGCACATGATCTGCAATGGGTGC-GGTACTTGGCCCTTATATTGGCCCCCTA
385 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
5055190 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5055255 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
5055320 -TCTGAGTTTTTAGCTGAATTTTTTTGTGGATACGAACAAAAATACAAGGGTCACGTCTACCAAG
580 TTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * ** * *
5055384 TTTGGGGGCAAAAATTCTTTCGAAAAAATTTTAAAATATCTTGAACCGTAGAAAGGTTTGAAAAT
644 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
* *
5055449 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGT
709 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
5055514 ATGAATATACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
774 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
5055579 TACCACCCTATCAATCCACGTCTTGCGCATCCCGTCTCTTTGGCCGGCG-AGGCGCCCGCCCGCC
839 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-------G--TGCC
5055643 CG
895 CG
* *
5055645 CCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGCCTAAG
1 CCCGCCCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
5055710 ATCGGACTGGACCAAGGGTTACAGCAGCAAGATTGGCAGCACGCAGAGGGGGACCTGGTCGATCC
62 ATCGGACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * * * * *
5055775 GCTGCTTTCACATCCCGCCCCTCTGGCCGACTGAGCGCTCGCATGCTCGTTTTGTGGGTTGACTT
127 -CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
5055840 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAG
191 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * **
5055905 ATCG-AGGATTGCGGCAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCACCG
256 ACCGAAGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTG
* * *
5055969 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGTTTCCGGCGATCGGGG
319 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGG
* *
5056034 GGGCCGGGGGGTGTGCGCACATGATGTCCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
383 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
5056099 TATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGGATTTGAGATTTTACAGGTTTGC
448 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
5056164 TGCCAGTAGCCATTAAAGTGACTGAAATGGGGACACTTCTTTCAAATGGTCAGAAAATCTTGTAC
513 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
5056229 AGTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATTCAAGGATCACGTCTACCAG
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * **
5056294 GTTTGGTGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
643 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
*
5056359 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
708 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
5056424 TATGAATTTACAAGCCATAAAAATGACATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCAC
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
5056489 CTACCA-CCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----G
838 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
5056543 CCCGCCCGCCCGTTCGTTTCCTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
5056608 GAC
66 GAC
5056611 GTTGCGACAG
Statistics
Matches: 11004, Mismatches: 1916, Indels: 1502
0.76 0.13 0.10
Matches are distributed among these distances:
841 4 0.00
842 37 0.00
843 3 0.00
844 2 0.00
845 1 0.00
846 1 0.00
847 2 0.00
848 2 0.00
849 2 0.00
851 5 0.00
852 7 0.00
853 2 0.00
854 6 0.00
855 1 0.00
856 7 0.00
857 53 0.00
858 377 0.03
859 4 0.00
860 3 0.00
861 135 0.01
863 2 0.00
864 5 0.00
865 15 0.00
866 302 0.03
867 325 0.03
868 75 0.01
869 13 0.00
870 11 0.00
871 2 0.00
872 2 0.00
873 8 0.00
874 8 0.00
875 121 0.01
876 20 0.00
877 4 0.00
878 2 0.00
879 4 0.00
880 6 0.00
881 3 0.00
882 4 0.00
883 1 0.00
884 1 0.00
885 179 0.02
886 105 0.01
887 80 0.01
888 218 0.02
889 342 0.03
890 696 0.06
891 456 0.04
892 380 0.03
893 67 0.01
894 597 0.05
895 261 0.02
896 52 0.00
897 78 0.01
898 461 0.04
899 30 0.00
900 1160 0.11
901 773 0.07
902 722 0.07
903 61 0.01
904 271 0.02
905 228 0.02
906 281 0.03
907 5 0.00
908 1 0.00
909 6 0.00
910 392 0.04
911 386 0.04
912 8 0.00
913 3 0.00
914 1 0.00
915 1 0.00
918 1 0.00
919 9 0.00
920 5 0.00
921 9 0.00
922 6 0.00
924 2 0.00
925 3 0.00
926 13 0.00
927 16 0.00
928 27 0.00
929 13 0.00
930 23 0.00
931 31 0.00
932 15 0.00
933 9 0.00
934 20 0.00
935 5 0.00
936 14 0.00
937 7 0.00
938 9 0.00
939 6 0.00
940 5 0.00
941 2 0.00
942 5 0.00
944 2 0.00
945 1 0.00
946 1 0.00
947 5 0.00
948 2 0.00
949 5 0.00
951 2 0.00
952 1 0.00
953 4 0.00
954 1 0.00
955 1 0.00
956 6 0.00
957 8 0.00
958 8 0.00
959 1 0.00
960 4 0.00
961 4 0.00
962 3 0.00
963 12 0.00
964 1 0.00
965 3 0.00
966 12 0.00
967 4 0.00
968 11 0.00
969 5 0.00
970 4 0.00
971 7 0.00
972 4 0.00
973 5 0.00
974 10 0.00
975 3 0.00
976 6 0.00
977 6 0.00
978 4 0.00
979 3 0.00
980 4 0.00
981 8 0.00
982 15 0.00
983 6 0.00
984 11 0.00
985 8 0.00
986 12 0.00
987 12 0.00
988 3 0.00
989 16 0.00
990 4 0.00
991 5 0.00
992 7 0.00
993 18 0.00
994 8 0.00
995 9 0.00
996 2 0.00
997 3 0.00
998 3 0.00
999 1 0.00
1000 8 0.00
1001 3 0.00
1002 1 0.00
1003 8 0.00
1004 11 0.00
1005 7 0.00
1006 11 0.00
1007 6 0.00
1008 4 0.00
1009 4 0.00
1010 1 0.00
1011 5 0.00
1012 2 0.00
1013 2 0.00
1014 14 0.00
1015 34 0.00
1016 22 0.00
1017 3 0.00
1018 18 0.00
1019 14 0.00
1020 17 0.00
1021 19 0.00
1022 9 0.00
1023 3 0.00
1024 304 0.03
1025 277 0.03
1026 265 0.02
1027 260 0.02
1028 214 0.02
1029 177 0.02
1030 218 0.02
1031 281 0.03
1032 215 0.02
1033 217 0.02
1034 172 0.02
1035 178 0.02
1036 803 0.07
1037 154 0.01
1038 158 0.01
1039 202 0.02
1040 170 0.02
1041 152 0.01
1042 133 0.01
1043 134 0.01
1044 99 0.01
1045 322 0.03
1046 103 0.01
1047 211 0.02
1048 99 0.01
1049 80 0.01
1050 81 0.01
1051 104 0.01
1052 72 0.01
1053 370 0.03
1054 212 0.02
1055 103 0.01
1056 195 0.02
1057 106 0.01
1058 239 0.02
1059 356 0.03
1060 210 0.02
1061 135 0.01
1062 108 0.01
1063 112 0.01
1064 96 0.01
1065 105 0.01
1066 187 0.02
1067 164 0.01
1068 417 0.04
1069 180 0.02
1070 110 0.01
1071 106 0.01
1072 130 0.01
1073 130 0.01
1074 546 0.05
1075 86 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGAACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGGGGCACC
ATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
Found at i:5054073 original size:26 final size:26
Alignment explanation
Indices: 5054037--5054089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5054027 GTTGACTCAG
5054037 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5054063 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5054089 G
1 G
5054090 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5054984 original size:26 final size:26
Alignment explanation
Indices: 5054927--5054984 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
5054917 TGTGGGTTAA
* *
5054927 CTTAGGCATACGGAGTTCATTCCCAG
1 CTTAAGCAAACGGAGTTCATTCCCAG
*
5054953 -TCTAAGCAAACGGAGTTCATTCTCAG
1 CT-TAAGCAAACGGAGTTCATTCCCAG
5054979 CTTAAG
1 CTTAAG
5054985 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 25 0.93
27 1 0.04
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAGCAAACGGAGTTCATTCCCAG
Found at i:5055640 original size:4 final size:4
Alignment explanation
Indices: 5055631--5055657 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
5055621 GCCGGCGAGG
5055631 CGCC CGCC CGCC CGCC CGCC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGC
5055658 TCGCTCGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.74, G:0.26, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:5055871 original size:26 final size:26
Alignment explanation
Indices: 5055842--5055894 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5055832 GTTGACTTAG
*
5055842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5055868 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5055894 G
1 G
5055895 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5057475 original size:26 final size:26
Alignment explanation
Indices: 5057439--5057491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5057429 GTTAACTCAG
5057439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5057465 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5057491 G
1 G
5057492 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5058229 original size:26 final size:26
Alignment explanation
Indices: 5058179--5058231 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5058169 GTTGACTTAG
* * *
5058179 GCATACAGAGTTCATTCCTATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
5058205 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
5058231 G
1 G
5058232 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:5059093 original size:26 final size:26
Alignment explanation
Indices: 5059057--5059109 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5059047 GTTGACTTAG
*
5059057 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5059083 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5059109 G
1 G
5059110 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5059901 original size:159 final size:159
Alignment explanation
Indices: 5059628--5059975 Score: 511
Period size: 159 Copynumber: 2.2 Consensus size: 159
5059618 TCGATTGGCA
* * * *
5059628 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGGGTTGCAACAGCAGGATTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACAACAGAAGGATCG
* * * *
5059693 GTAGCACGCAGAGAGGGACCCGACTGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
66 ATAGCACACAGAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
5059758 CGCCCGTACGCTCGTTTCATGGGTTGACT
131 CGCCCGCACGCTCGTTTCATGGGTTGACT
***
5059787 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTACGGTAGAAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTACAACAGAAGGATC
* * * *
5059851 GATAGCACACCGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG
65 GATAGCACACAGAGAGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
5059915 AGCGCCCGCACGCTCGTTTCATGGGTTGACT
129 AGCGCCCGCACGCTCGTTTCATGGGTTGACT
*
5059946 TAGGCAGACGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG
5059976 CATACGGAGT
Statistics
Matches: 170, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
158 2 0.01
159 168 0.99
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACAACAGAAGGATCG
ATAGCACACAGAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGACT
Found at i:5061134 original size:902 final size:901
Alignment explanation
Indices: 5058109--5069183 Score: 12521
Period size: 902 Copynumber: 12.4 Consensus size: 901
5058099 TATCGATCGA
* * * * * * *
5058109 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTCATTTCGTCGGTTGA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TGA-G--CGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
5058174 CTTAGGCATACAGAGTTCATTCCTATTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATC-GAA
62 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * *
5058238 CCGGACCGAGGGTTGCGGCAGCATATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCA
126 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * *
5058303 CCTGGGCACCATCACCGGAG-ATC--C---TAACC-G---G-CGGTATTCGGGTTTCGACGATCG
191 TCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* *
5058357 GGGGGGCCGGGGGGTGTGCAC-CATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCC
256 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* ** *
5058421 CCCTATCCCTCATCAAACCTTGAGAACAAATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
321 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
5058486 TGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
386 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
5058551 TGCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
451 TACACTTCGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** **
5058616 CAAGTATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAGTTTTGA
515 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
5058680 AAATCCTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
580 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
5058745 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACAT--AGAAATATGAAGATGTGCCTAAA
645 TTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAA
** * * ** *
5058808 CCCACCTACCATGCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTTACCGACGTA--------
708 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* ** * * * *
5058865 --G--AGCCCGCCTACTCGTTTCATCGATCGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA
773 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * * * *
5058926 TC-GCATTGGACCGTGGGTTGTGGCAGCAGGATCAACAGCACGGAGAGGTGGACCTGGCAGATCC
838 TCAG-ACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTC-GATCC
*
5058990 T
901 C
* * * * *
5058991 CGCCTTGTGCATCCCGCCCTTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * **
5059056 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * *
5059121 CTGAGGTTTGCGACAGCACATGCTAGGCTCGGGCATGGGCTGGTGCCGCATTTTTCTTCATCGAG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
** * * * ** * * * *
5059186 GCACCATCGTCAGAGCATCACCGGAGAACTTGACCGGTGACATTGGGGTACCGGCGATC-GGGGA
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
5059250 GCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5059315 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5059380 CCAGTAGCCATTAAAGTGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * **
5059445 TTTGAGTTTTTAGCTTAAGGGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCTTTGGCAT
456 TTCGAGTTTTTAGC-T----GA--ATT-T-T---TTATGCATGCCAACAAAAAT-AC-AAGG-AT
** ** * * * * * ** *** *** *
5059508 GCA-GAAATATGAAG-AT-GTGCCTAAAC-CC-ACC--TACCACCCT-ATCGATCCACG-GCTTG
506 -CACG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-CGAAC---
*** * ***** ** **** ** ** * *
5059564 CGCATCCAGTCTC-TCTGGC-TG--GCATAGTGCCCGCCCAACCG-CCCG-CTTG---TTTCATC
565 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG---AGTCGTCTTGCCATGAAACTTCA-C
* * ** * * ** * ** *
5059620 GATTGGCATAGGCATACGGAGTTCATTCCTAGTCTAAGAT-CGAA-CCAGACCAA-GG-GTT-GC
626 G--T-G-A-AGGCTTAAGG-GACCATT-GTA-T-GAATTTAC-AAGCCATAAAAATGGCATTGGC
* * * * * *** ** * * * *
5059680 A-ACAG---CA-G--GAT-TG-GTAGCACGCAGAGAGGGACCCGA-CTGATCCCCAGCTTGTGCA
681 ATGCAGAAATATGAAGATGTGCCTA-AACCCACCTA-CCACCCTATC-GATCCACGGCTTGCGCA
* * * ** * * *
5059735 TCCCGCCCCTCTGGCCGGC----T----G--AG--CGCCCGTACGCTCGTTTCATGGGTTGACTT
743 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * * *
5059788 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGAAGGATCGA
808 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * *
5059853 TAGCACACCGAGGGGGACCCAGCCGATCCC
873 CAGCACGCAGAGGGGGACCC-GTCGATCCC
* *
5059883 CGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
5059948 GGCAGACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATGAGACCAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * *
5060013 CCGAGGGTTGTGGCAGCACATGCTGGGATCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
5060078 GCACCATCAACGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* **
5060143 GCCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCTCCCCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5060208 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
5060273 CCAGTAGCCATTATAGTG-CGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACA
391 CCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
5060337 CTTCGAGTTTTTAGTTGAAATTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGCCTACAAAG
455 CTTCGAGTTTTTAGCTG-AATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * * * *
5060402 TTTAGAGCCAAAATTACTTTCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCGAAAAT
519 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
*
5060467 CATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
584 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
5060532 ATGAATTTAAAAGCAATAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACC
649 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
5060597 TATCAACCTATCGATCCACGGCGTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACC
714 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
5060662 GCCCGCCCGCTCGATTCGTCGATTGGCTTAGGCATATGGAGTTCATTCACAGTCTAAGATCAGAC
779 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*** * * * * * * *
5060727 TGGATTTAGGGTTACGGTAGTAGGATTGGTAGCACACAGAGGGGGACCCAGTTGATCCC
844 TGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCC
* *
5060786 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
5060851 GGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTC-CTCCCAGTTTAAAATCAGACCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * *
5060915 CTGAGGGTTACGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * **
5060980 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGACATTAGGGTTCCGGTGATCGGGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5061045 GCCAGGGGGTTTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
5061110 TCCCTCATCAAACCTCGAGAACTCACACCCCCATATAGAGCATTTGAGATTTTACAGGTTTGTTT
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CT
* * * *
5061175 G-CAGTCGCCCATTTAAGTGTCTAAAATGGGGA-A-TTTTTTCAAATGGTCACGAAATCTTGTAA
390 GCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-A
*
5061237 CACTTCGAGTTTTTAGCCTGAATTTTTTATGCATG-CAAC-AAAATACAAAGGATCACATCTAAC
453 CACTTCGAGTTTTTAG-CTGAATTTTTTATGCATGCCAACAAAAATAC-AAGGATCACGTCT-AC
** * * ** * *
5061300 C-A-TCAGAGGCTCAAAA-TACTTCTGAAAAAATTTTAAAAAAAT-CCAAACCG-TAAAAGTTTC
515 CAAGTTTGGGGC-CAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTC
* * *
5061360 -AAAATCATGAAAAA-ATGAAAACGAGTC--ATTGCCATG-AACTTCAATGTGAAGGCTTAA-GC
578 AAAAATCATGAAAAATA-GAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGG
* * *
5061419 TCCATTGTATGAAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGATGAATG-GCC
641 ACCATTGTATG-AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG-ATGTGCC
* * * * * * *
5061483 TTAAAGCCACCTACCACCCTATCGATCAACGGCGTGTGCATCCCGTCTTTTTGCCCGGCGTAGT-
704 -TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * **
5061547 -----------GCCCGCCCGTTCGATTCAACGGTTGGCTTAGGCA-AGCGGAGTTCATTCCCAGT
768 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGT
* ** * * * * *
5061600 CTAAGATCAGACTAGATTGAGGGTTGCGGTAGTAGGATCGGCAGCACACAAAGGGGGACCCAGTT
832 CTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTC
5061665 GATCCC
896 GATCCC
* *
5061671 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
5061736 AGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TTCCCAATCTAAGATCGGACTGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** *
5061800 CCGAGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** *
5061865 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTGGTGATCGAGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * *
5061930 GCCAGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5061995 TCCCTCATCAAACTTCGAGAACTCACACCCCCATATAGAGCATTTGAGATTTTACAAGTTTGCTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
5062060 CCAGTAGCCATTAAAGTGTCTCAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACAC
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
5062125 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
456 TTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
5062190 TTGGAGCCAAAATTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
520 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
5062255 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTATA
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
5062320 TTAATATACAAGCCCTAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
5062385 ACCAACCTATCGATGCATGGCTTGCGTATCCCGTCTCTCTGGCTGGCGTAGT------------G
715 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
5062438 CCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAGATTTCATTCCTAGTCTAAGATCAGACC
780 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * ** * * *
5062503 GGATCGAGGGTTCCAGCAATAGGATCGGCAGCATGTAGAGGGGGGCCCGGTCGATCCC
845 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCC
* * * * *
5062561 CGGCTTGCACATCTCACCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
5062626 AGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * **
5062691 CCGGGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
5062756 GCACCATCACCGGAGCATCGTCGGAGAACCTGACAGGCGGTATTGGGGTTCCGACGATCGAGGGA
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5062821 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTACATTGGCCCTCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5062886 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGCTTGCTA
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
5062951 CCAGTAACCATTAAAGTGTCTGAAATGGGGACATTTTTTTCCAATTGTCACAAAATCTTGTACAC
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
5063016 TTCGAGTTTTTTGCTGAATTTTTTTATGCATGCCAACAAAAATATAAGGATCATGTCTACTAAGT
456 TTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
5063081 TTGGGGCCAAAATTTCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
520 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * * *
5063146 ATAAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTC
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5063211 TGAATTTACAAGCCA-CAAAAGGGCATTGTTACAT--AGAAATATGAAGATGTGCCTAAACCCAC
650 TGAATTTACAAGCCATAAAAATGGCATTG--GCATGCAGAAATATGAAGATGTGCCTAAACCCAC
*
5063273 CTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
713 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * *
5063338 CGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCAATCTAAGATCAGA
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
5063403 CAGGATCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGGCCCGGCCGATCAC
843 CTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCC
* * * * * * * *
5063463 TGGCTTGTGCATCCTGCCCCTTTGGTCGGCTAAGCGCCCGCACACTCATTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* ** *
5063528 GGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* *
5063593 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
*** * * * **
5063658 GCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGAT-AAGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
5063722 GCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5063787 TCCCTCATCAAATCTCGAGAACTCTCACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTACTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5063852 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * ** **
5063917 TTCAAGTTTTTAGCTGAATGTTTTTGTGCATGGGAACAAAAATACAAGGATCACGTCTAAAATAG
456 TTCGAGTTTTTAGCTGAAT-TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AG
* * * *
5063982 TTTTGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAAT
519 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
*
5064047 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
584 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
5064112 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAAGATGAAGATGTGCCTAAACCCACC
649 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
5064177 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCACCC
714 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
** * *
5064242 GCCCGTTCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
779 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
5064307 AGGAACAAGGGTTACAGCAGCAGGATCGGCAGCACGCAGAGGTGGACACGGTCGATCCC
844 TGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGTCGATCCC
* * * * * * *
5064366 CGGCTTGTGCATCCCGCCCCTTTGGCCGGTTGAGCGCCTGTACGCTCGTTTCGTGGGCTGACTCA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
5064431 GGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * *
5064496 CCGAGGGTTGCAGCAGCACTTGCTGGGCTTGGGCATGTGCTGGGGCTGCATTTTTC-T--TC---
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
5064555 G-----T---CGGAGCATCATCGGAGAACCTGACTGGCGGCGTTGGGGTTCCGGCGATCGGGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * * * *
5064612 GCCGAGGCAGGAGTGCGCTCTTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTC
261 GCCG-GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
5064677 TGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 TATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTG
5064742 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGAA-CTTGT
388 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGT
*
5064806 ACACTTCGAGTTTTTAGCTGAATTTTATTATGCATGGCAACAAAAATACAAGGATCACGTCTACC
452 ACACTTCGAGTTTTTAGCTGAATTTT-TTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
5064871 AAGTTTTGGCCCAAAACTCCTT--AAGACAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
516 AAGTTTGGGGCCAAAACTCCTTCCAA-A-AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
5064934 AAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCACGAACCTTCACGTGAAGGCTTAAGGGACC
579 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
5064999 ATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTACCCAAAC
644 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
5065064 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTGTCTGG-CGGCGTATTGCCCACC
709 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G------
*
5065128 CGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
766 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *
5065193 TCTAAGATCAGA-TCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTCGA
831 TCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-
*
5065257 CCGATCCC
894 TCGATCCC
* * * * * *
5065265 CGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTTGTGGGTTGAGTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
5065330 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG----------G-C------C--A---GA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
** * * * * * * **
5065369 TTGAGGGTTACGGCACCACATACTGGGCTCGGGCATGTGTTGGTGCCACCTTTTTCTTCACCGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
** ** * * *
5065434 GCACCATCGTCGGAGCATCGCCAGAGAACCTGACC-ACGGTATTGGGGTTCCGACGATCGGGGTG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
5065498 GCCGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCT
261 GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
5065563 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCT
325 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-
**
5065627 TG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTAC
389 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* **
5065691 ACTTCGAGTTTTCAGCTGAATTTTTTTATGCATGTGAACAAAAATAC-AGCGATCACGTCTACCA
454 ACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAG-GATCACGTCTACCA
* ** ** *
5065755 AGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCGAAA
517 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
5065820 ATTATGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATT
582 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
5065885 GTATGAATTTATAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
647 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
5065950 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTGTCTGGCCGACGTAATGCCCACCCGC
712 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGC
* * * *
5066015 CCGTCCGCCCGCCTGCTCGTTTCCTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
773 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
* * * * * * * * *
5066080 AT-GGATTAGACCGAGGGTTGTGGCAGCAGCATCGGTAGCACGCTGAGGGGGACTCGACCGATCC
837 ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-TCGATCC
5066144 C
901 C
* * * *
5066145 TGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
5066210 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATGTAAGATCAGATCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * *
5066275 TCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGGATTTTTCTTCGTTGGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** ** * * * *
5066340 GCAGCATCGTCGGAATATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATAGGGGTG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5066405 GCCGGGGGGGTGTGCGCACATGAAGTGCGATGGGTCCTGGTACTTGGTCCTTATATTGGTCCCCT
261 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
5066470 ATCCCTCATCAAACCTCGAGATCTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGCTTTGCT
325 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* ** *
5066535 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCTGGTACA
390 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
5066600 CTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAAAAAAAATAC-AGCGATCATGTTTACCAA
455 CTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAG-GATCACGTCTACCAA
* * * **
5066664 GTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAATATCCAGAACCTTAAAAAGTTTCAAAAA
518 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * * *
5066729 TTATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGTAGGCTTAAGGGACCATTG
583 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
5066794 TATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
5066859 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACGCC
713 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
5066924 CGCCCGCCCGCTTGTTTTGTCGTTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGG
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
5066989 CTGGACTGAGGGTTGCGGCAGCAGGATCGG-AGCACGTAGAGAGGGACCCGACCGATCCC
843 CTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-TCGATCCC
* ** * * *
5067048 CGGCTTGCGCATCCCACCCCTCTGGCATGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACATA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
5067113 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * * *
5067178 CCGAGGGTTACAGTAGAACATGCTGGGCTCGGGCATGTGCTGGTGTCACAATTCTCTTCGTCAGG
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** * * ** * * *
5067243 GCACCATCGCTGAAGCATCGCCGGAGAACGTAACCGACGATATTGGGGTTTCGGCGATCAGGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
5067308 GCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
5067373 TCCCTCATCATACCTCGATAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5067438 CCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACAG
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
5067503 TTAGAGTTTTTAACTGAATTGTTTTATGCATTCCAACCAAAATACAAGGATCACGTCTACCAAGT
456 TTCGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
5067568 TTGAGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
520 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * * *
5067633 ATGAATAATAGAAAACAAGTC-T-TTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTCTA
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5067696 TGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
5067761 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTAGCCGACGTATTGCCCGCCCGCCCT
715 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * ** *
5067826 CTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATTGGACC
780 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * ** * * * * *
5067891 AGACCAAGAATTGCGGCAGCAGGATCAGCAGCATGCAGAGGTGGACTCGGTCGATCCT
845 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGTCGATCCC
* * * *
5067949 CGGGTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGCGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
5068014 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * ** * *
5068079 CCGAGGGCTGCGACAGCACATGCTGGG-TCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCAGA
131 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
** * *
5068143 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
196 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5068208 GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATACTGGCCTCCTA
261 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5068273 TCCCTCATCAAACCTCGAGAACCCTCACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTG
326 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5068338 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATAGTCACAAAATCTTGTACAC
391 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
5068402 ATCGAGTTTTTAGCTGAATTTTTTTTGCATACCAACAAATATACAAGGATCACG-CGTACCAAGT
456 TTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGT
* ** * *
5068466 TTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAGTCCCAAACCGCAAAAAGTTTCAAAAATC
520 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
5068531 ATGAAAAATAGAAAA-GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
5068595 TGAATTTAGAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACTCAGCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
5068660 ACCACCCTATCAATCTACGACTTGCGCATCCCG--TCTCT------C-T-G-G-CCG---GCCCG
715 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * ** * *
5068710 TCCTCCCGTTCGTTTCGTCAGTTGGCTTAGTTATACGGAGTTCATTCCCAGTCTAAGATCGGACC
780 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * * *
5068775 GAACC-ATGGGTTGTGGCAGCAAGATCAGCAACACGTAGA-GGGGACCCGATCGATCCC
845 GGACCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-TCGATCCC
* * * *
5068832 CGGCTTGCACATCCCGCCCCTCTGGCCGGCTGATG-ACCCGCACACTCATTTCGTGGGTTGACTT
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTT
5068896 AGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAGTCATTCCCAGCCTAAGCATACGGAGTTC
65 AGGCATACGGAGTTCATT-C----C----C-----AG----T------CTAAGCATACGGAGTTC
** *
5068961 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGC
106 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
5069026 TGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCAGAGCATCACCGAAGAACCTGATCGACGG
171 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGG
* * * * *
5069091 CATTGGAGTTCCGATGATC-GGGGGGTCGGGGGGTATGCACACATGATGTGCGATGGGTGCTGGT
236 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* **
5069155 ACTCGGAACTTATATTGGCCCCCTATCCC
301 ACTTGGCCCTTATATTGGCCCCCTATCCC
5069184 CATTAAAGTG
Statistics
Matches: 8758, Mismatches: 1161, Indels: 523
0.84 0.11 0.05
Matches are distributed among these distances:
873 45 0.01
874 1 0.00
876 3 0.00
878 154 0.02
879 5 0.00
880 220 0.03
881 18 0.00
882 45 0.01
883 456 0.05
884 170 0.02
885 605 0.07
886 96 0.01
887 71 0.01
888 38 0.00
889 267 0.03
890 359 0.04
891 621 0.07
892 679 0.08
893 357 0.04
894 7 0.00
895 32 0.00
896 82 0.01
897 82 0.01
898 156 0.02
899 398 0.05
900 522 0.06
901 460 0.05
902 1071 0.12
903 850 0.10
904 89 0.01
906 86 0.01
907 245 0.03
908 468 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
GCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCGATCCC
Found at i:5061786 original size:25 final size:26
Alignment explanation
Indices: 5061734--5061788 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
5061724 TGGGTTGACT
*
5061734 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
*
5061760 TAAGCATACGGAGTTC-TTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
5061785 TAAG
1 TAAG
5061789 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:5062653 original size:26 final size:26
Alignment explanation
Indices: 5062624--5062679 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5062614 TGGGTTGACT
5062624 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
5062650 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
5062676 TAAG
1 TAAG
5062680 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:5064461 original size:26 final size:26
Alignment explanation
Indices: 5064432--5064484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5064422 GCTGACTCAG
5064432 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
5064458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5064484 G
1 G
5064485 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:5065135 original size:4 final size:4
Alignment explanation
Indices: 5065121--5065150 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
5065111 GCGGCGTATT
*
5065121 GCCC ACCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
5065151 TCGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.73, G:0.23, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:5066263 original size:26 final size:26
Alignment explanation
Indices: 5066211--5066263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5066201 GTTGACTTAG
*
5066211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5066237 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5066263 G
1 G
5066264 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5067144 original size:26 final size:26
Alignment explanation
Indices: 5067114--5067166 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5067104 GTTGACATAG
5067114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5067140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5067166 G
1 G
5067167 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5068044 original size:26 final size:26
Alignment explanation
Indices: 5068015--5068067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5068005 GTTGACTTAG
5068015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5068041 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5068067 G
1 G
5068068 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5068967 original size:26 final size:26
Alignment explanation
Indices: 5068898--5068974 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
5068888 GTTGACTTAG
*
5068898 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5068924 GCATA-TGAG-TCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5068948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5068974 G
1 G
5068975 ATTGGACCGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
24 18 0.41
25 6 0.14
26 20 0.45
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5069778 original size:26 final size:26
Alignment explanation
Indices: 5069749--5069801 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5069739 GTTGACTTAG
* *
5069749 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATATAGAGCTCATTCCCAGTCTAA
*
5069775 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATATAGAGCTCATTCCCAGTCTAA
5069801 G
1 G
5069802 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGCTCATTCCCAGTCTAA
Found at i:5070675 original size:26 final size:26
Alignment explanation
Indices: 5070638--5070690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5070628 GTTGACTTAG
*
5070638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5070664 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5070690 G
1 G
5070691 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5071566 original size:26 final size:26
Alignment explanation
Indices: 5071530--5071582 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5071520 GTTGAGTTAC
5071530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5071556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5071582 G
1 G
5071583 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5072478 original size:26 final size:26
Alignment explanation
Indices: 5072442--5072494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5072432 GTTGACTTAG
5072442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5072468 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5072494 G
1 G
5072495 ATTGTACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5072634 original size:912 final size:901
Alignment explanation
Indices: 5069183--5079482 Score: 12206
Period size: 912 Copynumber: 11.5 Consensus size: 901
5069173 CCCCCTATCC
* *
5069183 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGC
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
5069248 TTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATATCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
5069313 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5069378 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5069443 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACGTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
5069508 TATCGATCCATGGCTTGCGCATCCCGTTTCTTTGGCCGGCTTAGTGCCCG---TCCGCCCGCTCG
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCG
* * * *
5069570 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGATCGAG
391 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** * ** * *
5069635 GGTTATGGCAGCAGGATTGGCAGCACGCAGAGGGGGACTTGGTCGA-CCCTGGCTTGCGCGTCCT
456 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCC
* * * * **
5069699 GCCCCTCTAGCCGGCTGAGCGCCCGTACGCTAGTTTTGT-GGTTGACTTAGGCATATAGAGTTCA
521 GCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
5069763 TTCCTAGTCTAAGCATATGGAGCTCATTCCCAGTCTAAGATCGGACCGAACTGA--G-TGCGGCA
585 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
* *
5069825 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGAGCACCA---T-----
650 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GCACCATCGTCGGAG
** * * **
5069882 C--C-CCGTAGAACCTGACCGGTGGCATTAGAGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGC
714 CATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * **
5069944 GCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCAACTATCCCTCATCAAACC
779 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
5070009 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
844 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5070067 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5070132 TTTTAGCTGAATTTCTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** * * * ** *
5070197 CAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGACAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
5070262 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5070327 ACAAGCCAT-AAAATGGCATTGGCACGTATAAATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * **
5070391 TATTGATCCACGGCTTGCGTATCCCGTCTCTCTGGTCGACGTAGTGCCCGTTCGCCCGCCCGATC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCCCCGCCCGCCC
** * * * * * * ** *
5070456 GCTTATTTCATCTGTTGGCTTACGAATACTGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGA
390 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * * * *
5070521 AGGTTGTGGCAGCAGGATCGGTATCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCC
455 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCC
* * * ** *
5070586 TGCCCCTCTGGCTGGTTGAGCGA-CTACACGCTCGTTGCGTGGGTTGACTTAGGCATACGGAGTT
520 CGCCCCTCT-GCCGGCTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * ** *
5070650 CATTCCCAGTCTAAGCATACGAAGTTCTTTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGG
583 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGG
* * * * *
5070715 CAGCACAGGCTGGCCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCTGGGGCA-CA--ATC--
648 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGCACCATCGTCGG
* * * *
5070775 -G--TCG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGACGACCAGGGGGGCCGTGGGGGCTG
712 AGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTG
* *
5070834 TGCGCACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
776 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
5070899 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
841 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5070960 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
5071025 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCATGTCTATCAAGTTT-GGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
5071089 CAAAAATCCTT-TCGAAAAAATTTTAAAAAATCTCGAACCGTAAAACGTTTCGAAAATCGTGAAA
131 CAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
5071153 AATAGAGAAA-GAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
195 AATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
5071217 TTACAAACAATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
259 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
5071282 CCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCTCCTGC
324 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGC
** * **
5071347 CCGCTCGTTTCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATG
388 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
** *** *
5071411 GAGGGTT-CTAACAGCAGGATCAATAGCACGCAGAGGGGGACCCGG-CTGATCCCCGGCTTGCGC
453 GAGGGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCTGGCTTGCGC
* * * * * * * * *
5071474 ATCGCGCCCCTTTACCTTGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGAGTTACGCATACGGA
516 ATCCCGCCCCTCTGCC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* **
5071539 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
580 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * * *
5071604 CAGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGACACATTTTTCTTCGTCGGGGCATCATCG-
645 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGT
* ** *
5071668 CTGGAGCATCGCCGTAGAACCTGACCGACGGCATTAGGGTTCCGATTATCGGGGGTGCCGGGGGG
709 C-GGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
5071733 GTGTGCGCACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
773 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
5071798 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
838 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5071862 CCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * **
5071927 TTTTTGCTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGGATCTCATCTAATAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
5071992 CAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTTAAAAATCGTGAAAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * *
5072057 ATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGACTTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5072122 ACAAGCCATAAAAAAGGAATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
5072187 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCCACCCACCCACCC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--------CCC-CCC
* * * * * * *
5072252 ACCCACCCGCTTGTTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGATCGGAC
382 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
5072317 CAGACCAAGGGTTACGGTAGCAGGATTGGTACCACGCAGAGGGGGACCCAGTCGATCCCTGGCTG
447 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTT
* * * *
5072382 GCGCATCCCGCCCTTCTAGTCGGCTGAGCACCTGCACGCTCGTTTCGTTGGTTGACTTAGGCATA
512 GCGCATCCCGCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
5072447 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGTACTAGACTGAGG
576 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
* * *
5072512 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCATGGCACCA
641 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCA
* **
5072577 TCGTCGGAGCATCGCCGTAGAACCTAACCGACGGCATTGGATTTCCGACGATCGGGGGGGCCGGG
705 TCGTCGGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * * *
5072642 GGGGTGTGTGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCATATCCCT
770 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
5072707 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
835 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5072772 AG
900 AG
* *
5072774 CCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5072839 TTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
5072904 CAAAAATCCTT-TCAAAAAATTTTTAAAAAATCCCCAACCACAAAAAGTTTTGAAAATCGTGAAA
131 CAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
*
5072968 AATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5073033 TACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTATCACC
260 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
5073098 CTATCGATGCACGGCTTGCGCATACTGTCTCTCT-GCCTGGTGTAGTTGCCACCCGCCCGCCCGC
325 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAG-TG---CCCGCCC-CCCGC
* ** * * * *
5073162 CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTAATTACCAGTCTAAGATCGGACCG
384 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
5073227 GACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTTGACTTGC
449 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGC
* *
5073292 ACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
514 GCATCCCGCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
5073357 GAGTTCATTCCCAG--T---C-TA---AG---A-T--CA---T-AG-T-GGA-T----CGAGGGT
578 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
* * * * * *
5073396 TACGGCAGCACGTGCTGGCCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG-CAGGGGTACTAT
643 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC--GGGCACCAT
* * * *
5073460 CGTTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG
706 CGTCGGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
*
5073524 GGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
771 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
5073589 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
836 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
5073654 G
901 G
* *
5073655 CCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
5073720 TTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGAT-ATGTCTGCCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * * *
5073784 GAAAACTCCTTTTGAGAAAATTTGAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * * * *
5073849 ATAAAAAATGAGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5073914 ACAGGCCATAAAAATGGCATTAGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
5073979 TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCGGGCGTAGT----G---CCCGCTCGTCCG
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCG
* * *
5074037 CTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACAGAG
391 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * *
5074102 GGTTGCGGCAGCAGGATTGGCCGCATGTAGAGGCGGACCCGGTCGATCCCTGACTTGCGCATCCC
456 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCC
* * * *
5074167 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGCAGTTCA
521 GCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
5074232 TTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGACA
585 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
* *
5074297 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA-C--CGTC---G
650 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAG
* * * *
5074356 --TCG--G-AGAACCTGACCGGCGGTACTGGGGTTCC-AGCGATCGGGGGGG-CTGGGGGGTGTG
714 CATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTG
* *
5074414 CGCACATGATGTGCGATGAGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
778 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * * *
5074479 CTCAAAAACTCACACGCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAG
843 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5074538 GCATTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTGGAG
1 CCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
5074602 TTTTTAGGTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTGCCAAGTTTGGGG
65 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
5074667 TCAAAACTCCTTCTGAGAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
130 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
5074732 AATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5074797 TACAGGCCATAAAAATGGCATTGGCACATAG-AATATGAAGATGTGCCT-AACACA-CTACCCAC
260 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA-CCAC
* * * * * * * *
5074859 CCTATCGACCCACGACTTGCGCATCCCATATCTCTGGTCGGGCGTA-T----G--CCACGCTCGT
324 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGGCGTAGTGCCCGCCCCCCGCCCGC
* *
5074917 CCGCTCATTTCGTCGATT-GCTTA-GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGA-C
388 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * *
5074978 AAGAGG-TACGGCAGC--GA--GG-AGCACGCAGA--GAGA-CC-ATCGAT-CCTGG-TTGCGCA
453 GAG-GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCA
* * *
5075031 T-CCG-CCCTCTGGCC-GTTGAAGCGCACG-ACG-TCG-TTCGT-GGTTGAC-TAGGCATAC-GA
517 TCCCGCCCCTCT-GCCGGCTG-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
5075087 -TTCA-TCCCA-TCTAAGCATACGAAGTTCTTTGCCA-TCTAAGATC-GAC--AACTGA-GGTT-
580 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
*
5075143 C-GCAGC-CATGCT-GGCTC-GGCATGTTTGCTGGCTG-TGCCA-TTTTCTTC-T---------T
645 CGGCAGCACATGCTGGGCTCGGGCATG--TGCTGG-TGCCG-CATTTTTCTTCGTCGGGCACCAT
* * * * *
5075192 CGTCGG-GCATTGTCGTCAGAA-CT----G-CGG-TTTAGGGTT-CTAGCGATCGGGGGGGCCGG
706 CGTCGGAGCATCGCCGT-AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG
* * *
5075248 GAGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTAGTTGGCCCTTTTATTGGCCCCCTATCC
769 G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5075313 CTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCA
833 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
5075378 GTAG
898 GTAG
* *
5075382 CCATTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAG
1 CCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
5075446 TTTTTAGTTGAATTTTTTTTGCGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
65 TTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5075511 GCAAAAAATCCTTCTGAAAAAATTCTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA
129 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * ***
5075576 AAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGGTTGTATGAAT
194 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * **
5075641 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGTTGTGTTTAAACCCACCTACCAC
259 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * * * *
5075706 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAACCGGTGAAGTGCCTG---CCCGCCCGCT
324 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCC
* * * * *
5075768 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCA
389 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * ** * * *
5075833 AGGGTTGTGGCAGCAGGATTGACAGTACACAAAGGGGGAATCGGCCGATCCCCGGCTTGTGCATC
454 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
* * * * * *
5075898 CCGCCCTTCAGGTCGGCTGA-CTGCCCGCACGTTCGTTTCGTGGTTTGACTTAGGCATACGGAGT
519 CCGCCCCTC-TGCCGGCTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
5075962 TCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAATCTAAGATCGGA-TCGGACAGAGGTTTAC
582 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGC
* * * **
5076025 GGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC
646 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTC
* * * * *
5076090 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAGCAGGGGCGCCGAGGGGGG
710 GGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGG
* * *
5076155 GTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAT
773 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
5076220 CAAAACCTCGAGAACATCCAACACCCACTT-AAGAGCATTTGAGATTATACACAGGTTTTGCTGC
838 C-AAACCTCGAGAAC-T-C-ACACCCCCTTAAAGAGCATTTGAGATT-T-TACAGG-TTTGCTGC
5076284 CAGTAG
896 CAGTAG
* *
5076290 CCATTAAAGTGGTCTGAAATAGGGGACACTTTTTCCCAAATGGTCAC-AAATCTTGTACAGTTCG
1 CCATTAAAGT-GTCTGAAAT-GGGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTTCG
5076354 AGTTTTTAAGCTGAATTTATTTT-TGCATGCCAAACAAAAATACAAGGGATCACCCTGTC-AGCC
63 AGTTTTT-AGCTGAATTT-TTTTGTGCATGCCAAA-AAAAATACAA-GGATCA--C-GTCTA-CC
* * * *
5076417 AAAGTTTGGGGCCAAAACT-CTGTCCCGCAACAATTTAAAAAAATCCCGAACCGGCAAAAATGTT
120 -AAGTTTGGGGCCAAAACTCCT-T-CTGAAAAAATTTTAAAAAATCCCGAACC-GCAAAAA-GTT
* * *
5076481 TCGAAAATCATGAAAAATAGAAAACGAAGTCGTCTTGCCACGAAACCTTCAACGTGAAGGCTTAA
180 TCAAAAATCGTGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAA-CTTC-ACGTGAAGGCTTAA
* *
5076546 GGGAACCATTGCATGAATTTACCAAGCCATAAAAATGGCATTGGCACGCAGAAAAAATTAATTGA
242 GGG-ACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTGGCACGTAG---AAA-T-A-TGA
* ** * *
5076611 AAATGAACCTAAACCCACCTACCACCCTAATCGATCCACGGCCTTACGCATACCGTCTCTCTGGC
299 AGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGG-CTTGCGCATCCCGTCTCTCTGGC
* * * * *
5076676 CTGGCGTAGTTGCCCACCCGCCCGCTCGCCTGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
362 C-GGCGTAG-TGCCCGCCC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * **
5076741 TCATTCCTAGTCTAAGAT-TGGGCTGCACCGAGGGTT-CTGGTAGCAGGATCAACAGCACGCAGA
424 TCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC-GGCAGCAGGATCGGCAGCACGCAGA
* * * *
5076804 GGGGGACTCGGTCGAT-CCTCGGCTTACGCATCCCGCCCCTCTGGCCTGCTGAG-AGCCCGTACG
487 GGGGGACCCGGTCGATCCCT-GGCTTGCGCATCCCGCCCCTCT-GCCGGCTGAGCA-CCCGCACG
* * * * * *
5076867 CTCGTTTCATTGGTTGACTTAGGCCTACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTGATTC
549 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
5076932 CCAGTCTAAGATCGGA-TCGGACTGAGGGTTACAGAAGCACATGCTGGGCTCGAGCATGTGCTGA
614 CCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
5076996 TGCCACATTTTTCTTCGCTGGGGCACCATCATCGGAGCATCACCGGTA-AACCAGACCGACGCCA
678 TGCCGCATTTTTCTTCG-TCGGGCACCATCGTCGGAGCATCGCC-GTAGAACCTGACCGACGGCA
*
5077060 TTGGGATTCCGACGAT-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
741 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5077124 CTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGC
806 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
5077188 ATTTGAGATGTTACAGGTTTGCTGCCAGGAG
871 ATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5077219 CCACTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * **
5077284 TTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAATACAATGATCACGTCTAAAAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
5077349 TAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAATCGCAAAAAGTTTCAAAAATCGTGAAAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5077414 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGAGACCATTGCATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** ** *
5077479 ACAAGCCATAACAACAGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
5077544 TATCGATCCACAGCTTGCACATCCCGTCTCTCTGGTCGGCGTAGT-----------GCCCGCCCG
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCG
* * * * *** * *
5077598 CTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATCAAATTGGACTGTG
391 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * *
5077663 GGTTACGGTAGAAGGATTGGCAGCATGCAGAGGGGGACTCGGCCAAT-CCTCGGCTTGCGCATCC
456 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCT-GGCTTGCGCATCC
* * * * * * *
5077727 CGCCCATTCTGGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCGTACGAAGTT
520 CGCCC-CTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
5077792 CATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACTGGACCGATGGTTGCGG
583 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGG
** * * * *
5077857 CAGCACATGCTGGTTTTGGGCATGTGCTGGTGCCACATTTTTCTTCCTCAGGGCACCATCGTCGA
648 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGG
* * * *
5077922 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGGGGGCC-GGGGGGTGT
712 AGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* *
5077986 GCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGG-CCCCTTTCCCTCATCAAA
777 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
5078050 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
842 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5078110 CCATTAAAGTATCTTAAATGGGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5078174 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATAACGTCTACCAGGTTTGGGAC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
5078239 CAAAAATCCTTCCGAAAAAATATTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
131 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
5078304 ATAGAAAATGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * * *
5078369 ACAAGCCA-AAAAATGGGATTGGAATGCAGAAATATGAAGCTGTTCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
5078433 TATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCC
* *
5078498 GCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGA
390 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * * ** * *
5078563 GGGTTGCGACAGCAAGATCGACAGTACGTAGAGGGGGACCTGACCGATCCCCGGCTTGTGCATCC
455 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCC
* * * ** * *
5078628 CGCCTCTCTGGCTGGCTGAGCGCGTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTC
520 CGCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** ** *
5078693 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACAGAGCTTTATGA
584 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGG
* * * * *
5078757 TAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACTATCGCCGG
648 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGG
** * * * * *
5078822 AGCATCATCG-ATGAACCTAATCGATGGCATTGGGGTTCCGGCGATCGGGGGCGCCGAGGGGGGG
712 AGCATCGCCGTA-GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGG
* * *
5078886 GTGTTCGCACATGATGTGCGATGGGTGCTGGAATTTGGCCCTTATATTGGCCCCCTATCCCTCAT
773 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
5078951 CAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
838 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5079015 CCATTAAAGTGTCTGAAA--GGGACAC-TTTTTCAAAATGGTCCCAAAATCTTGTACACTTTGAG
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAG
* *
5079077 TTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAATACAAAGGATCACGT-TACC-ACTTTGG
65 TTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATAC-AAGGATCACGTCTACCAAGTTTGG
* *
5079140 GGCCCAAAACCTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
128 GG-CCAAAA-CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
*
5079204 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATG
191 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5079269 AATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTAC
256 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
5079334 CACCCTATCGTTCCACGGCTTGCGTATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCTCGCC
321 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCC
* ** * * *
5079399 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCAAACCGG
385 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * *
5079464 ACCTAGGGCTACGGCAGCA
450 ACCGAGGGTTGCGGCAGCA
5079483 CGCAGAGGGG
Statistics
Matches: 8147, Mismatches: 987, Indels: 542
0.84 0.10 0.06
Matches are distributed among these distances:
841 5 0.00
842 20 0.00
843 7 0.00
844 194 0.02
845 192 0.02
846 19 0.00
847 48 0.01
848 11 0.00
849 25 0.00
850 28 0.00
851 7 0.00
852 20 0.00
853 25 0.00
854 11 0.00
855 2 0.00
856 11 0.00
857 22 0.00
858 5 0.00
859 11 0.00
860 1 0.00
861 11 0.00
862 8 0.00
863 9 0.00
864 7 0.00
865 12 0.00
866 21 0.00
867 14 0.00
868 200 0.02
869 7 0.00
870 11 0.00
871 8 0.00
872 12 0.00
873 3 0.00
874 13 0.00
875 10 0.00
876 28 0.00
877 6 0.00
879 15 0.00
880 245 0.03
881 259 0.03
882 172 0.02
883 421 0.05
884 428 0.05
885 6 0.00
886 5 0.00
887 103 0.01
888 46 0.01
889 159 0.02
890 363 0.04
891 330 0.04
892 469 0.06
893 371 0.05
894 68 0.01
895 11 0.00
896 1 0.00
898 1 0.00
899 5 0.00
900 208 0.03
901 130 0.02
902 321 0.04
903 292 0.04
904 137 0.02
905 256 0.03
906 230 0.03
907 5 0.00
908 216 0.03
909 8 0.00
910 46 0.01
911 66 0.01
912 787 0.10
913 23 0.00
914 17 0.00
915 10 0.00
916 38 0.00
917 49 0.01
918 14 0.00
919 49 0.01
920 35 0.00
921 8 0.00
922 19 0.00
923 13 0.00
924 33 0.00
925 14 0.00
926 30 0.00
927 38 0.00
928 10 0.00
929 23 0.00
930 30 0.00
931 18 0.00
932 38 0.00
933 6 0.00
934 5 0.00
935 12 0.00
936 68 0.01
937 5 0.00
938 195 0.02
939 120 0.01
940 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCC
GCCCCTCTGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCA
TCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
Found at i:5075987 original size:26 final size:25
Alignment explanation
Indices: 5075951--5076002 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
5075941 TTTGACTTAG
*
5075951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
5075977 GCATACGGAGTTCATTCCAATCTAA
1 GCATACGGAGTTCATTCCAATCTAA
5076002 G
1 G
5076003 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:5078716 original size:26 final size:26
Alignment explanation
Indices: 5078680--5078732 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5078670 GTTGACTTAG
5078680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5078706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5078732 G
1 G
5078733 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5081793 original size:26 final size:26
Alignment explanation
Indices: 5081757--5081835 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5081747 GTTGACTTAG
*
5081757 GCATACGGAGTTCTTTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
5081783 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
* *
5081809 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
5081835 G
1 G
5081836 ATCGAACTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:5082666 original size:915 final size:926
Alignment explanation
Indices: 5080855--5086232 Score: 3056
Period size: 920 Copynumber: 6.0 Consensus size: 926
5080845 CCTGCATGCT
* * *
5080855 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGATCAGACCGAGG
1 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGG
* ** *
5080920 GTTGTGGCAGCACATGCTGGGCTTAGGCATGTGTCGGTGCCGTATTTTTCTTCATCGGGGCACCA
66 GTTGCGGCAGCACATGCTGGGCTTAGGCATGTGTCGGTGCCACATTTTTCCTCATCGGGGCACCA
* **
5080985 TCTTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGAGAGATCGGGG
131 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-G-GATC---AGATCGGGG
** *
5081050 GTGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTATCC
191 GTGGGCCGAGCG--CATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTATCC
* * *
5081115 CTCATCAAACCTTGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
254 CTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCA
*
5081180 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
319 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
5081245 GAGTTTTTAGCTGAATTTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
384 GAGTTTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACAAGGACCACGTCTACCAAGTCT
* * * *
5081310 GGGGTCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGGCACAAAAAGTTTTGAAAATCGT
449 GGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGCCACAAAAAGTTTCGAAAATCAT
*
5081375 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
514 GAAAAATAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5081440 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAACTATAAAGATGTGCCTAAACCCACCTAC
579 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAC
* * * * *
5081505 CACCCTATCGATCCACAGCTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGGC
644 CACCCTATCGATCCACAGATTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC
5081570 CTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGG
709 CTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGG
** * * * * * *
5081635 ACTGAGGGTTACGGTAGTAGGATCGGCAGCATGCAAAGGGGGACCCAACCAATCTCCGGCTTGCT
774 ACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCAACCAATCCCCAGCTTGCT
* * *
5081700 CATCCCACCCCTCTGGCTGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
839 CATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
5081765 AGTTCTTTTCCAGTCTAAGCATA
904 AGTTCATTCCCAGTCTAAGCATA
* * *
5081788 CGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAACTGAATCGAG
1 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAG-ACCGAG
* *
5081852 GGTTGCGGCAGCACATGCTGGGC-TCGGGATGTG-CTGGTGCCACATTTTTCCTC-TCCGGGGCA
65 GGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGTC-GGTGCCACATTTTTCCTCAT-CGGGGCA
* * *
5081914 CCATCGTCGGAGCATCACCGGAGAACTTGACGGGCGGCATTGGGGTTCC-GA-C-GATC-GGGG-
128 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGATCAGATCGGGGGT
* * * * * *
5081974 GGGCCGAG-G-A-GGTGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCGTCA
193 GGGCCGAGCGCATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTATCCCTCA
5082036 TCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAG
258 TCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAG
* * *
5082101 CCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATGTTGTACATTTCGAG-
323 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5082165 TTTTAGCT-AAATTTTTTTGTGCATGGAAAAAAAAATACGAGGACCACGTCTACCAAGTCTGGGG
388 TTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACAAGGACCACGTCTACCAAGTCTGGGG
* ** *
5082229 CCAAAACTTCTTT-CGAAAAAATTTTAAAAAATCCCA-A-CCGTAAAATGTTTCGAAAATCATGA
453 CCAAAAC-TCTTTCCGAAAAAATTTAAAAAAAT-CCAGAGCCACAAAAAGTTTCGAAAATCATGA
*
5082291 AAAATAGAAAACGAGT-AGTCTTGCCATCAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGA
516 AAAATAGAAAACGAGTCA-TCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
5082355 ATTTACAAGCCATAAAAATGGCTTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
580 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACC
* * * *
5082420 ACCCTATCGATCCACGGATTATGCATCCCGTCTCTCTGGCAGGGCGTAGTGCCCACCCGCCCGCC
645 ACCCTATCGATCCACAGATTACGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCACCCGCCCGCC
* * * *
5082485 CGTC-CGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCG
709 C-TCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACCG
* * * * * * *
5082549 GACCAAGGGTTGCGGCAGCAGGATTGACAGCACGTAGAA-TGGGACCCGATCGATCCCCAGCTTG
773 GACCAAGGGTTACGGCAGCAGGATCGACAGCACGCA-AAGGGGGACCCAACCAATCCCCAGCTTG
* * *
5082613 -TGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
837 CT-CATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
5082677 CGGAGTTCATTCCCAGTGTAAG-AT-
901 CGGAGTTCATTCCCAGTCTAAGCATA
* * ** * * * *
5082701 CGGA--TCGA--ACC-G---AGGGTTATGGTAG--CA----C-ATGCTAGGCTC-G----G-GC-
1 CGGAGTTC-ATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAAT-CTAAGATCAGAACAGACCG
* * *** * * *
5082744 A-TG-TGCTGG-TGCCACAT--TTTTCTT---CA----TCGG-GGCAC------CATCGTC--GG
63 AGGGTTGC-GGCAG-CACATGCTGGGCTTAGGCATGTGTCGGTGCCACATTTTTCCTCATCGGGG
* * * * *
5082788 -AGCATCGTCGGAAG-A--ACCTGACCGACCGCATTGGGGTTCCGAC-G-ATCGAGGG----GG-
126 CACCATCGTCGG-AGCATCACCGGA--GAAC-C--T---G-ACCGACGGCATTG-GGGTTCCGGA
* * * * *
5082842 -CCGA--GGGGGTCGTGG-C--GCACATGATAGTGGCGATGGGTGCTGGTACTTGGCCC-T-TAT
180 TCAGATCGGGGGT-G-GGCCGAGCGCATGAT-GT-GCGATGGGTGCCGGGACTTAGCCCTTATAT
* *
5082899 TGGTCCACCCTAATCCGTCATCAAACC-TCATG-ACTCAACAACCCCTTAAAGAGTTCATTTGAG
241 TGG-CC-CCCT-ATCCCTCATCAAACCTTGA-GAACTC-ACAACCCCTTAAAGAG--CATTTGAG
*
5082962 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AATATGGGGACACTTTTTTCAAATGG
299 ATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGG
* * * * *
5083026 TCATAAAATCTTGTACACTTTGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCACAAAAAATACA
363 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACA
* * * * * ** * *
5083090 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTACCGAAAAAATTTTTAAAAATCCCGAACC
428 AGGACCACGTCTACCAAGTCTGGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGCC
* * * * * * * *
5083155 ATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC--GTTATGCATTGGCATGTAGAAATATGAA
493 ACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT-C-TTGCCAT-CA-AACT-TCAC
* * ** ** *** ** *
5083218 GATG--TGCCTAA---ACCCA-CCTACCACCCTATC--G--ATCCACA--GC-TTGCGCATC-CA
553 G-TGAAGGCTTAAGGGA-CCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTG-GCA-CACA
** *** * * * * * * * * * *
5083269 G-TCT-TTCTGCCTG-GCGTAGTACCCGCCTGCC-CGCC---CG-CCCGCTCG-TT--TCAT-CG
613 GAAATATAAAG-ATGTGCCTA-AACCCACCTACCAC-CCTATCGATCCAC-AGATTACGCATCCC
** * *** * ***** *** * **
5083322 GT-TGGCT-TAGGCATAC-TGAGTTCATTCCCAGTCTAAGATCAAAC-CGGATT-GAAGGTTGCG
674 GTCT--CTCT-GGCCGACGT-AGTGCCCACCC-GCCCGCCCTCTCGCTC-GTTTCGTCGGTTG-G
* * ***** * * ** *
5083382 ACAGTAGG-AT-CGGCAG--C-A-CACAAAGGGGGA-CTTGATC-GATCCCCGGCTT---GC-GC
732 -C-TTAGGCATACGG-AGTTCAATCCCAATCTAAGATC-AGACCGGA-CCAAGGGTTACGGCAGC
**** ** ** ** ** *
5083435 ---ATCG-C-GC-C-C--CTCTGG--CC-GGCTGTGTGCCAGCACGCTCAT-------TTCGTGA
792 AGGATCGACAGCACGCAAAGGGGGACCCAACCAAT-CCCCAGCTTGCTCATCCCACCCCTC-TG-
** * ** * * * *** * *
5083481 GTTGACTTAGGCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCACTCCCAGT
854 GCCGACTGA-GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
5083539 CTAAG-AT-
918 CTAAGCATA
** * ** * *
5083546 C-G-G---A-T--C-G-----G-AT-C-GAG--GGTT-GC-GGC--AG--CA-AA-TG-CTG-GG
1 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGG
* * * * * **** * *
5083582 CTTG-GGCATG----TGCTGGTGC---CGCATTTTTC--T-TCACCGGGGTACCATCA-C-CGG-
66 GTTGCGGCA-GCACATGCTGG-GCTTAGGCATGTGTCGGTGCCA-CATTTTTCC-TCATCGGGGC
* * * * * * ** * *
5083633 AGCATCGTCGAAGAACCTGACCGGCAGCA-TTG-GGGTTCCGGCGATCGGAGG----GG-TCAG-
127 ACCATCGTCG--GAGCATCACCGG-AGAACCTGACCG--ACGGC-ATTGG-GGTTCCGGATCAGA
* * ** *
5083690 --GGGGGTGTGTGCACATGATGTGC--GAT-TG-G-TGCTGGTACTTGG-C----CCTTATAT-T
185 TCGGGGGTG-G-GC-C--GA-GCGCATGATGTGCGATG--GGTGCCGGGACTTAGCCCT-TATAT
* * * * * * * * * * * * * *
5083742 GGCCCCCTAT-CCCTCATCA--AACCTTGAGA-ACTCCCA-ACCCCTTAAAGAGCA--TTTGAGA
241 TGGCCCC-CTATCC-C-TCATCAAACCT-TGAGA-ACTCACAACCCCTTAA-AG-AGCATT-TGA
* * *
5083800 --TTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGG
298 GATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
5083863 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACA
363 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACA
* * * *** * * *
5083927 AGGATCACGTATACCAAGTTTACAGCCACAACTCTTTCCGAAAAAATTTTAAAAAATCTC-GAAC
428 AGGACCACGTCTACCAAGTCTGGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATC-CAGAGC
*** ** * * *
5083991 TGTAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGA
492 CACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGA
* * ** * * *
5084056 AGGCTTAAGCGACCATTGAATGAATTTACAAGATATAAAAATGGCATTGGCATGA-AAAAATATG
557 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAATATA
* * * * * * *
5084120 GAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATAGCTTACGCAACCTGTCTGTCTGGCC
621 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGATTACGCATCCCGTCTCTCTGGCC
* * *
5084185 -AGCCTATTG----CCCGCCCG--C-C-CGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTC
686 GA-CGTAGTGCCCACCCGCCCGCCCTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * ** * *
5084241 ATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGG
750 AATCCCAATCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGG
** * * * * * * *
5084306 GA-CCTGCCGATCCCCAGCTTGCGCATCCCGCCCTTCTAGCCGGCTGAGCGCCCGCACGCTCGTT
815 GACCCAACCAATCCCCAGCTTGCTCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTT
* *
5084370 TCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGCCTAAGCATA
880 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
5084417 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACAGAG
1 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAAC-AGACCGAG
* ** * * ** * *
5084481 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTTCACCGGGGTACC
65 GGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGTCGGTGCCACATTTTTCCTCATCGGGGCACC
* ** * * ***
5084546 ATCGCCGGAGCATCACCGGAGAACCTGACCGGTGGCAGTGAGGTTCCGACGATC-GGGGGGCCGG
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG--GATCAGATCGG--GG
* * * * * * * * *
5084610 GAGGGTTGCGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
191 GTGGG--CCGAGCGCATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTATCC
* * * * *
5084675 ATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTGGA-ATTTTACAGGTTTGCTA-CC
254 CTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-AGCC
* *
5084738 AATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
318 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * ** * * *
5084803 CGAGTTTTTAGCTG-AATTTTTTTGTACATGCCAACCAAAATACAAGGATCACGTTTACCAAGTT
383 CGAGTTTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACAAGGACCACGTCTACCAAGTC
* * * * * * * *
5084867 TGGGGCCAAAAATCCTTCTGATAAAATTTTAAAAAATCCCGAACCACAAAAGGTTTCGAAAATCA
448 TGGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGCCACAAAAAGTTTCGAAAATCA
* * *
5084932 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTAT
513 TGAAAAATAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
5084997 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
578 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTA
* * * * * *
5085062 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGAAGTGCCCACCCGCCCG-
643 CCACCCTATCGATCCACAGATTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGC
* * * **
5085126 ---CTCGCTCGTTTCGTCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
708 CCTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACCG
* * * * * ** * * * * * * *
5085188 GATCGAGGGTTACGGTAGTAAGATCGACAGCACATAGATGGGGACCCGACCGATCCTCGGCTTAC
773 GACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCAACCAATCCCCAGCTTGC
* * * *
5085253 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
838 TCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
5085318 GAGTTCATTCCCAGTCCAAGCATA
903 GAGTTCATTCCCAGTCTAAGCATA
* *
5085342 CGGAGTTCATTCCCAGTCTAAG-AT--TG-G----------A-C------C-G---A-ACCAAGG
1 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGG
* * ** *
5085381 GTTGTGGCAGCACATGCTGGGC-TCGAGCATGTG-CTGGTGCTGCATTTTTCTTCA-CTGGGGCA
66 GTTGCGGCAGCACATGCTGGGCTTAG-GCATGTGTC-GGTGCCACATTTTTCCTCATC-GGGGCA
** * **
5085443 CCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGCCG
128 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG--GATC-A--GATCG
* ** * * * * * *
5085508 GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCGCTA
188 GGGGTGGGCCGAGCG--CATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTA
* *
5085573 TCCGTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAG
251 TCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAG
* *
5085638 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATGTTGTACAC
316 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * ** *
5085703 TTCGAGTTTTTAGCTGAAA-TTCTTTGTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAG
381 TTCGAGTTTTTAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACAAGGACCACGTCTACCAAG
* * * * * * ** * *
5085767 TTTGGGGCCAAAACGCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAGAAAGTTTTGAAAAT
446 TCTGGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGCCACAAAAAGTTTCGAAAAT
* * ** * *
5085831 CGTGAAAAATAGAAAACGAATCGCCTTGCCATGAAACTTCACGTGAA-GCTTAAGGCACCATTGT
511 CATGAAAAATAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
5085895 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
576 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACC
* ** * * *
5085960 TACCACCCTATCGATTCACATCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
641 TACCACCCTATCGATCCACAGATTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
* * *
5086025 G--C-C-CG-T--TTT-GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAACATCAGAC
706 GCCCTCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGAC
* * * * * * * *
5086082 C-GAACAGAGGGTTACGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
771 CGGACCA-AGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCAACCAATCCCCAGCT
* * * * ** * *
5086146 TGCGCATCCCGCCCCTCTGGTC-AGCTGAGCGCCCATATGCTCGTTTCATGGGTTGACTTAGGCA
835 TGCTCATCCCACCCCTCTGGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
5086210 TATGGAGTTCATTCCCAGTCTAA
899 TACGGAGTTCATTCCCAGTCTAA
5086233 TATCAGACCG
Statistics
Matches: 3485, Mismatches: 625, Indels: 707
0.72 0.13 0.15
Matches are distributed among these distances:
832 2 0.00
833 2 0.00
834 7 0.00
835 15 0.00
836 3 0.00
837 221 0.06
838 13 0.00
839 13 0.00
840 19 0.01
841 22 0.01
842 20 0.01
843 14 0.00
844 53 0.02
845 60 0.02
846 13 0.00
847 7 0.00
848 8 0.00
849 11 0.00
850 15 0.00
851 19 0.01
852 8 0.00
853 2 0.00
855 3 0.00
856 11 0.00
857 3 0.00
858 14 0.00
859 3 0.00
861 1 0.00
862 7 0.00
863 9 0.00
864 7 0.00
865 4 0.00
866 1 0.00
867 2 0.00
868 3 0.00
869 26 0.01
870 5 0.00
871 15 0.00
872 3 0.00
873 28 0.01
874 18 0.01
875 18 0.01
876 14 0.00
877 10 0.00
878 8 0.00
879 12 0.00
880 31 0.01
881 18 0.01
882 37 0.01
883 36 0.01
884 6 0.00
885 98 0.03
886 94 0.03
887 45 0.01
888 4 0.00
889 9 0.00
890 5 0.00
891 5 0.00
892 7 0.00
893 8 0.00
894 3 0.00
895 4 0.00
896 172 0.05
897 4 0.00
898 3 0.00
899 111 0.03
900 147 0.04
901 184 0.05
902 151 0.04
903 8 0.00
904 8 0.00
905 4 0.00
906 14 0.00
907 11 0.00
908 15 0.00
909 6 0.00
910 11 0.00
911 4 0.00
912 5 0.00
913 6 0.00
914 185 0.05
915 280 0.08
916 26 0.01
917 170 0.05
918 5 0.00
919 15 0.00
920 367 0.11
921 3 0.00
922 6 0.00
923 5 0.00
924 101 0.03
925 119 0.03
928 1 0.00
929 2 0.00
931 2 0.00
932 77 0.02
933 75 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (926 bp):
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGG
GTTGCGGCAGCACATGCTGGGCTTAGGCATGTGTCGGTGCCACATTTTTCCTCATCGGGGCACCA
TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGATCAGATCGGGGGTGGG
CCGAGCGCATGATGTGCGATGGGTGCCGGGACTTAGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAAATTTTTTTGTGCAAGCAAAAAAAAATACAAGGACCACGTCTACCAAGTCTGGGGCCA
AAACTCTTTCCGAAAAAATTTAAAAAAATCCAGAGCCACAAAAAGTTTCGAAAATCATGAAAAAT
AGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACAGATTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCTCTCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGGACCAAGG
GTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCAACCAATCCCCAGCTTGCTCATCCCA
CCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATA
Found at i:5083527 original size:26 final size:26
Alignment explanation
Indices: 5083491--5083543 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5083481 GTTGACTTAG
*
5083491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5083517 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5083543 G
1 G
5083544 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:5084415 original size:26 final size:26
Alignment explanation
Indices: 5084386--5084464 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5084376 GTTGACTTAG
* *
5084386 GCATACGGATTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5084412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5084438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5084464 G
1 G
5084465 ATCGAACTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5086385 original size:158 final size:159
Alignment explanation
Indices: 5086045--5086390 Score: 478
Period size: 159 Copynumber: 2.2 Consensus size: 159
5086035 TTGGTTGGCT
* * **
5086045 TAGGCATACGGAGTTCATTCCCAATCTAACATCAGACCGAACAGAGGGTTACGGCAGTAGGATCG
1 TAGGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGAACAGAGGGTTACAACAGTAGGATCG
* * *
5086110 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCAGCTGAG
66 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGTCAGCTGAG
* * * *
5086175 CGCCCATATGCTCGTTTCATGGGTTGACT
131 CGCCCACACGCTCGTTTCATAGGTTGACA
* * * *
5086204 TAGGCATATGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCAACAGTAGGATCG
1 TAGGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGAACAGAGGGTTACAACAGTAGGATCG
* * * *
5086269 ACAGCACGTAGAGGGTGACCCGACCGAT-CCCGGCTTACGCATCCCATCCTTCTGGTCGGCTGAG
66 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGTCAGCTGAG
* * * *
5086333 CGCTCGCACGCTTGTTTCGTAGGTTGACA
131 CGCCCACACGCTCGTTTCATAGGTTGACA
5086362 TAGGCATATGGAGTTCATTCCCAGTCTAA
1 TAGGCATATGGAGTTCATTCCCAGTCTAA
5086391 GCATAAGGAG
Statistics
Matches: 164, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
158 81 0.49
159 83 0.51
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
TAGGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGAACAGAGGGTTACAACAGTAGGATCG
ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGTCAGCTGAG
CGCCCACACGCTCGTTTCATAGGTTGACA
Found at i:5086401 original size:26 final size:26
Alignment explanation
Indices: 5086365--5086416 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5086355 GTTGACATAG
*
5086365 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5086391 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5086417 AGATCAGACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:5088220 original size:26 final size:26
Alignment explanation
Indices: 5088184--5088235 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5088174 GTTGACTTAG
*
5088184 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5088210 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5088236 AGATCAGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:5088406 original size:26 final size:26
Alignment explanation
Indices: 5088370--5088422 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5088360 GACGACTTAG
5088370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5088396 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5088422 G
1 G
5088423 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5088509 original size:185 final size:186
Alignment explanation
Indices: 5088177--5088524 Score: 515
Period size: 185 Copynumber: 1.9 Consensus size: 186
5088167 TTCGTGGGTT
**
5088177 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAGATCA
1 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAGATCA
* *
5088242 GGCCAGATCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
66 GGCCAGAGCAAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
*
5088307 CACCGGGGAACCATCGTCAGAGCAACGTCGGAGCATCGTCGGAGAACCAGACCGAC
131 CACCGGGGAACCATCGTCAGAGCAACGCCGGAGCATCGTCGGAGAACCAGACCGAC
5088363 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATA-GAGTTCATTCCCAGTCT-AAGATC
1 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAAGATC
* * **
5088426 -GGACCAGAGCGAGGGTTAC-AGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGTATTTTT
65 AGG-CCAGAGCAAGGGTTACGA-CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTT
** * * *
5088489 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
128 CTTCACCGGGGAACCATCGTCAGAGCAACGCCGGAG
5088525 AACTTGATTG
Statistics
Matches: 145, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
184 3 0.02
185 88 0.61
186 53 0.37
187 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (186 bp):
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAGATCA
GGCCAGAGCAAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
CACCGGGGAACCATCGTCAGAGCAACGCCGGAGCATCGTCGGAGAACCAGACCGAC
Found at i:5090138 original size:26 final size:26
Alignment explanation
Indices: 5090108--5090160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5090098 GTTGACTTAG
* *
5090108 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5090134 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5090160 G
1 G
5090161 AACTGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:5093232 original size:903 final size:902
Alignment explanation
Indices: 5088363--5100002 Score: 11677
Period size: 903 Copynumber: 12.8 Consensus size: 902
5088353 CCAGACCGAC
* *
5088363 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
5088428 ACCAGAGCGAGGGTTACAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGT-ATTTTTCTT
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TCATTTTTCTT
* * ** * *
5088492 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGATTGGCGGCATTGGGGTTTCGACGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
5088557 CGGGGGATCCGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
195 CGGGGG-GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
5088622 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAG
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
5088687 GTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * * *
5088752 TTGTACACTTCGAGTTTTTTGCTGAATTGTTTTATGCATGCAAAAAAAAAAACAAGGATCATGTC
388 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
5088817 TACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
453 TACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
5088881 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
**
5088946 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA--TG--TA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* ** * * * *
5089007 AACCCACCTACCACCCTATCAATCCGTGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCC
* * * * * *
5089072 GCCTGTCCGACCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAA
712 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
5089137 GATCAGACCGGATTGAGGGTTGCAACAGCAGGATCGAG-AGCACGTAGAGGGGGACACGGCCGAT
777 GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCG-GCAGCACGTAGAGGGGGACCCGGCTGAT
* * * ** *
5089201 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGTGCCCTAATGCTCGTTTCGTGGGTT
841 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
5089263 GACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG-----T-----TC----A---G
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * ** * * *
5089302 ACCAGACCAAGGGTTGCGGCAACACATGCCGGGCTTAGGCATGTGCTGGTG-C-GATTTGTCTTA
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
* * * * *
5089365 G-CGGGGCACCATTG-CGGTGCA-CACCGAAGAACCTG-CCGAC-GCATT-GGGTT-CGCCGATC
131 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * ** *
5089423 -GAGGGTC--GGGG-GTGCGCACATGATGTGCGA-GGGTATTGGTAC--GGCCATTATATTGGCC
196 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
5089481 CCC-AT-CCTC-TCAAA-C-C-AGAACTC-CA-CCCCTTAAAGGGGCATTTGAGATTTTACAGG-
261 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-GAGCATTTGAGATTTTACAGGT
* * *
5089537 TCGCTGCCAGTGAG-CATT-AAGTGTCT-GAATGGGGA-AC-TTTTTCAAATGGCCACAAAATCT
325 TTGCTGCCAGT-AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
5089597 TGTACACTT-GAG-TTTTAGCTGAATTTTTTTGTGGGCAAGCCAACAAAAATACAAGGATCACGT
389 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT--GCATGCCAACAAAAATACAAGGATCACGT
* * * *
5089660 CTAACC-A-TTT-GGGCCAAAA--CCTAAACCGAAAAAGTTTTAAAAAATCCCTAACCGTAAAAA
452 CT-ACCAAGTTTGGGGCCAAAACTCCT--TCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
5089720 GTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAA
514 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
5089785 GGGGCCATTGTATGAATTTTCAAGCCTTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
579 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
** * * * *
5089850 CTAAACCTGCCTACCACCCTAGT-AATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGT
644 CTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT
* * * * * *
5089914 --------TCCCGCCCGCCTGTTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGA
708 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * * *
5089971 CTAAGATCAGATCGGACTGAGGGTTACGGTAGCAGGATCGGTAGCATGCAGAGGGGGATCCGACC
773 CTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT
** * * * * * * *
5090036 GATCCCCAACTTGTGCATCCCGCCCCTCTGGTCGACAGACCGCCCGCACGTTCGTTTCATGGGTT
838 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
5090101 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAACTG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
5090166 ACC-GAACCGAGGGTTACGGTAGGACATACTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTT
66 ACCAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* * * * * *
5090230 CGTCGGGGCACCTTCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGTTTTCGGCGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
5090295 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGCGCTGGTACTTGGCCCTTATATTG
195 C-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5090360 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA-AGGAATTTGAGATTTTACA
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACA
* * * * *
5090424 GTTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAAT
322 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
5090489 CTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG-
387 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
5090553 -T--C---TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCTGAACCGTAAAAAGTT
452 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
5090612 TTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
**
5090677 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA--TG--TA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * ** *
5090738 AACCCACCTACCACCCTATCAATCCGCAGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTACCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCC
* * *
5090803 GCCCGTCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAA
712 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * ** *
5090868 GATCAGACCGGATTGAGAGTTGCAACAGCAGGATCGAG-AGCACGTAGAGGGGGACAAGGCCGAT
777 GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCG-GCAGCACGTAGAGGGGGACCCGGCTGAT
* * * * **
5090932 CCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTAAGTGCCCTAACGCTCGTTTCGTGGGTT
841 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*** * *
5090994 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCGAGTCTAATATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* *
5091059 ACCAGACCGAGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTT
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTT
** * * * * *
5091123 CACCGGGCCACCATTGCCGGAGCATCGCCGAAGAACCTGATCGACGGCATTGGGGTTCCGATGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
*
5091188 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGC
195 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
5091253 CCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
260 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
5091318 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTT
325 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
5091383 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG--T-
390 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
5091445 -C---TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTA
455 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* *
5091506 AAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
520 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* **
5091571 ATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA--TG--TAAAC
585 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
5091632 CCACCTACCACCCTATCAATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCC
650 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC
* * *
5091697 CGTCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGAT
715 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * *** *
5091762 CAGACCGGATTGAGGGTTGCAACAGCAGGATCGAG-AGCACGTA-AGGGGGAAATGGCCGATCCC
780 CAGACCGGACCGAGGGTTACAGCAGCAGGATCG-GCAGCACGTAGAGGGGGACCCGGCTGATCCC
* * ** **
5091825 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTAATTGCCCTAACGCTCGTTTCGTGGGTT
844 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *** * *
5091884 GACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCGAGTCTAATATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * *
5091949 ACCAGATCGAGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTT
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTT
** * * ** * * **
5092013 CACCGGGCCACCATTGCCGGAGCATCGAAGAAGAACCTGATCGACGGCATTGGGGTTCCGGTGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
*
5092078 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGC
195 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
5092143 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
260 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
5092208 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTT
325 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
5092273 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCCA
390 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
5092338 -CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCA
455 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* *
5092402 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
520 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
5092467 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
585 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * * **
5092532 CCACCTACCACCCCAGCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCTGGCGTAGTGCTTGCC
650 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC
* * * **
5092597 CGCCCGCCCGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGAT
715 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
5092662 CAGATCAGACCGAGGGTTACAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCTC
780 CAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATCCCC
** * * * *
5092727 GGCTTTTGTATCCTGCCCCTCTGGCGGGCTGAGCGCCCGCACACTCGTTTCGTGGGTT
845 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
5092785 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* ** ** ** *
5092850 ACCAAACCGAGGGTTGTGATAGCACATGCTGGGCTCAAGCATGTGTTGGTGCCTCATTTTTCTTC
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
* * * *
5092915 GTCGGGCCACCATCGCTGGAGCATCGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGGCGATC
131 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
5092980 GGGGGGACCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
196 GGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
5093045 TCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAA-AGGAATTTGCGATTTTACAG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAG
* * *
5093109 GTTTGCTGCCTGTAGCCATTAACGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATC
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
5093174 TTCTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGTCAACAAAAATTCAAGGATCACATC
388 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** * *
5093239 TACCAAGTTTGGGG-CAAAAATCCTTCCCAAAAAATTTTAAAAGATCCTGAACCGTAAAAAGTTT
453 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * * *
5093303 TGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGA
518 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
5093368 CCGTTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
583 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * ** *
5093433 ACCCACCTACCACCCTAGCAATCCACGGCTTGCGCATTCCGTCTCTCTGGCCAGCATAGTGCCCG
648 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG
* * * *
5093498 TCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGCGTTCATTCCTAGTCTAAG
713 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
5093563 ATCAGACCGGACCGAGGGTTATGGTAGCAGGATTGGCAACACATAGAGGGGGACCC-GTTCGATC
778 ATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT-GATC
* * * * * * *
5093627 CCCAGCTTGCGCATCCCGCCTCTCTGGCTGGCTGAGTGCCCGCATGTTCGTTTCATGGGTT
842 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
5093688 GACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGA
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * ** * ** * * *
5093753 ACCGGACCAAGGGTTACGATAGCAGGAT-C-GGCAGCATGCAAAGGGGGACCCGTTC-GAT-CCC
66 ACCAGACCGAGGGTTACGGCAGCA-CATGCTGG--GC-T-C-----GGG-CATGTGCTGGTGCCT
* * * * * ** * *
5093814 CGATTTGTGCATCTCACCTC-TCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGG-G---TTG
120 C-ATTT-T---TCT----TCGTCGGGGC-AC-CATCG-CCGGA-G--CATCGC-CGGAGAACCTG
** * * *** * ** **** * * * * * * *
5093874 ACTTA-GGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCG
169 ACCGACGGCAT-TGGGGTTC-CGACGA-TC-GGGGGGCCGGGGGGT-GTGCGCA--C-ATGAT-G
* * * * * ** * *
5093937 -GACCCGACCTAGGGTTACAGCAGCACATGCTGG-GCTTGGGCATGTGCTGGTGCCACATTTTTC
225 TG---CGA--T-GGG-TGCTG--GTAC-T--TGGCCCTT----ATAT--T-G-GCC-CCCTATCC
* * **** * * ** * * *** * * * * * ** * ** **
5094000 TTCGTCGGGGCACCA-TCCCCAGAGAACCTGACCGACAGCA-TTGGGGTTCCGAC-GATCGGGGG
269 CTCATCAAACCTCGAGAACTCACACCCCCTTA--AAGAGCATTTGAGATT-TTACAGGT-TTGCT
* *** * * ** ****
5094062 GCCGAG-GGGGGTGTCGCACA-TGATGTACGATGGGTG-CTGGTACTTGGCCCCAATATTGGCCC
330 GCC-AGTAGCCAT-T---AAAGTG-TCTAAAATGGG-GAC----ACTT-TTTTCAA-A-TGG---
* * * ** *
5094124 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTA--AG-ATTTTACAGG
378 ----T--CACA--AAATCTT--G---T-ACA----CTT--CGAGTTTTTAGCTGAATTTT-----
** ** * * ** * *
5094186 TTTGCTGCCAGTAGCCATTAAAGTGTTTGA-AATGGGGA-CACTTTTTTCAA--AT-GGTCACAA
418 TTTG-TG-CA-T-GCCAACAAA---AAT-ACAA---GGATCACGTCTACCAAGTTTGGGGC-CAA
** ** *
5094246 AATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
471 AA-C---T-C-CTTCTGA------A----AA---AATT-T---T-----AAAAAAT-C-CCGAAC
** * * ** * * *
5094310 ACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAA--AATCCCGAAC-CG-C
506 -CG--TAAAAAGTTT-----CAAAA-ATCGT--G-AAAAA-TAGAAAACGAGT--CG-TCTTGCC
* * * ** * * * * * ** *
5094371 A-AAAAGTTTCA---AAAATCATGAA---A-AATAGAAAATGAGTTGT-CTTGCCATGAAACTTC
555 ATGAAA-CTTCACGTGAAGGC-TTAAGGGACCATTG--TATGAATT-TACAAGCCAT-AAA---A
* * * *
5094427 ATGTGAACGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
611 ATG-G--C-ATT--GGCACGCA--G-A--AA--T--ATG----AAG-------------------
5094491 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
638 ---------ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
5094556 CTAGCCGGCGTAGTGCCCACCCGTCCC-CCCGCCCACTCGTTTCGTCGGTTAGCTTAGGCATACG
694 CTGGCTGGCGTAGTGCCCGCCCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *** ** * *
5094620 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGTGGCAGCAGGATTAGTAGCACGCA
758 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTA
* * * *
5094685 GAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACG
823 GAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
5094750 CTCGTTTCGTGGATT
888 CTCGTTTCGTGGGTT
* * * *
5094765 GACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * ** *
5094830 ACC-GAACTGAGGGTTGCGGTACCACATGCTGGGCTCATGCATGTGCTGGTGCCACATTTTTCTT
66 ACCAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* * * * *
5094894 CATCGGGG---CAT-------G-ATCCCCGGAGAACCTGACCGGCAGTATTGGGGTTCCGACGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
5094948 CGGGGGGGCCGAGAGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG
195 C-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
5095013 CCTCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
5095077 TTTGCTGCCAGTAGCAATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATCT
324 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
5095142 TGTACACTTCGAGATTTTAGCTGATTTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCT
389 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * **
5095207 ACCAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATCCCAAATTGTAAAAAGTTT
454 ACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
5095271 CTAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
518 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
5095336 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
583 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * *
5095401 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATACCGTCTCTCTAG-TCGGCGTAGTGCCC
648 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCC
* * * * *
5095465 ACCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTTGCTTAGGCATACGAAATTCATTCCCAGTCTAA
712 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
5095530 GATCGGACCAGATCGAGGGTTACTGCAATAGGATCAGCAGCACGTAGAGGGGGACCCGG-TCGAT
777 GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT-GAT
* * * * * * *
5095594 CCTCGGCTTGCGGATCCTGTCCCTCTGGCCGGCTTATCACCCGCACGCTCGTTTCGTGGGTT
841 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
5095656 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGCTCATTCCCAGTCTAAGATTGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
5095721 ACCAGACCGAGGGTTGCGGCAGCAGATGGTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
* ** * ** * *
5095786 G-CTGAGGCACCATCGCCGGAGCATCAACGGAGAACCTGACAGGTGACATTGGGTTTCCGACGAT
131 GTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
5095850 CGAGGGGGCTGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGTTACTTGGCCCTTATATTGG
195 CG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
5095915 CCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCTTTAAAGAGCATTTGAGATTTTACAGG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
5095980 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTTTCAAATGGTCATAAAATCT
324 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
5096045 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
389 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
5096110 ACCAAGTTTAGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTT
454 ACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* **
5096174 CTAAAATCGTGAAAAATAGAAAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
518 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
5096239 CCATTATATGAATTTACAAGCCATCAAAAA-GGCATTGGCACACAGAAATATGAAGATGTGCCTA
583 CCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * *
5096303 AACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATTTCTTTGG-TCGACGTAGTGCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCC
* * ** * * *
5096367 CACCTGCCCGCCCAGCCCGCTTATTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCGAGTCA
711 CGCCCGCCCGCCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * * * **
5096432 AAGATCAGATTGAACCAAGGGTTGCAGCAACAGGATCGGCAGTACGCAGAGGGGTACTTGG-TCG
775 AAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT-G
* * ** **
5096496 ATCCCCGGCTTGCGCAT-----CCCTCTAGCCGGCTGAGTGCTTGCACGCTCGTTTCGTGCATT
839 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
5096555 GACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
5096619 ATCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTC
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
** * ** ** *
5096684 ACCGAGGCACCATCATCGGAGTGTCACCGGAGAACCTGACCTG-CGGCATTGGGGTTCCGACGAT
131 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGAT
*
5096748 CGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
195 C-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
5096813 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
5096878 GTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT-GGCA-ATTTTTTTTCAAATGGTCACAAAAT
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA-CTTTTTTCAAATGGTCACAAAAT
* * *
5096941 CTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT-TAGCATGCCAAAAAAAATACAAGGATCATG
387 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACG
* *** **
5097005 TCTACCAAGTTTGGGGCCAAAACTACTTCTGAAAAAATTTTAAAAAATTTGGAATAGTAAAAAGT
451 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
5097070 TTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
516 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
5097135 GACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
581 GACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
5097200 TAAGCCCAGCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCT-GCGTAGTG
645 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGGCGTAGTG
* * ** * *
5097264 CCCGCCCGCCCG-TCGACCCGCTCATTTAATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGT
709 CCCGCCCGCCCGCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * *** * * * *
5097328 CTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAGGACCGGTAGCACATAGAGGGGGACTCGG-T
773 CTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT
* * * * *
5097392 CGATCCTCGGCTTGCGCATCCCACCCTTCTGGTCGGCTGACCGCCCGCACGCTCGTTTCGTGGGT
838 -GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
5097457 T
902 T
* * * * *
5097458 GACTTAGGCATATGGACTTCATTTCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
5097523 ATCAGACCGAGGGTTGCGGCAGCACTTACTGGGCTCGGGCATGGGCTGGTGTCGCATTTTTCTTC
66 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
* * * ** * *
5097588 GTCGGGGGACCATTGCCAGAGCATCATCGGAGAACCTGACCTG-CGGCTTTGGGGTTCTGACGAT
131 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGAT
* * * * * **
5097652 CGGGGGGCCAGGGGGGTATGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCTCATATAATAT
195 CGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
5097717 CCCCCTATCCCTCATCAAGCCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
5097782 TCTGGTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAAATCT
324 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
5097847 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCT
389 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * * * *
5097912 ACTTAGTTTAGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTC
454 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * * *
5097977 AAAAATTGTGAAAAATAGAAAATGGGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
519 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
5098042 CATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
584 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
** * *
5098107 CGTACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG-TCGGCATAGT----G
649 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCG
* * *
5098167 CCCGCCCGCCCG-CCGCTCTTTTCGTCGGTTGCCTTAGGCATACGGAGTTCACTCCCAGTCTAAG
713 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *** * * *
5098231 ATCAGACCAGACTGAGGGTTACGGCAGCAGAATCAATAGCACGTAGA-GGGGTCCTGGCCGATCC
778 ATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATCC
* * * * * * *
5098295 CCGACTTGTGCATCCCGTCCCTCTAGTCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTT
843 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * * *
5098355 AACTTAGGTATAC-GAGTTCATTCCAAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * *
5098419 ACC-GAACCAAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
66 ACCAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* * ** **
5098483 CGTCGGGGCACCATCTCCGGAGCATCTCCGTCGAACCTGACCGGTGGCATTGGGGTTCCGACGAT
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
5098548 CGGGGGCGGCCGTGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
195 C-GGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
5098613 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
5098678 GTGTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGGCATTTTTTTCAAATGGTCATAAAATC
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
5098743 TTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
388 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
5098808 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCGAATCGTAAAAAGTTT
453 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
5098873 CAAAAATCGTGACAAATAGAAAAGGAGTCGTCTTGCCGTGAAACTTCAGGTGAAGGCTTAAGGGA
518 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
5098938 CAATTGCATGAATTTACAA-CCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTACCTAA
583 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
*
5099002 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGG-TCGGCGTAGTGCCC
648 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCC
* * * * * *
5099066 GCTCGCCCACCCACCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAA
712 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *** * * * * *
5099131 GATTGGACTGGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGAGGGACCCGGTTGATC
777 GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATC
* * * * *
5099196 CTCGGCTTACGCATCCAGCCCCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
842 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
5099257 GACTTAGGCATACGAAGTTCTTTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * *
5099322 ACCAGATCGAGGATTACGGCCA-CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
66 ACCAGACCGAGGGTTACGG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* ** * * *
5099386 CGTTGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGATC-AGCGGCATTGGTGCTCCGACGA
130 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGA
* * * * **
5099450 TTGAAGGGGTCGGGGGGTGTGCGCACATGAAGTGCGATGGGTGCCAGTACTTGGCCCTTATATTG
194 TCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
5099515 GCCACCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGCGCATTTGAGATTTTACAG
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
5099580 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAAT
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC-AAAAT
* * *
5099645 CTTGCACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
387 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
5099710 CTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACCGTAAAAAGTT
452 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
5099774 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTCAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
5099839 GCCATTGTATGAAATTACAAGCCTTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
5099904 AACCCACCTACCACCCTAGT-GATCCACGGCTTGCGCATACCGTCTCTCTGGCTGACGTATTGCC
647 AACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCC
* * * * *
5099968 CGCCTGCCCACACC-CCCACTCATTTCGTTGGTTGG
711 CGCCCGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGG
5100003 ATCGGACTGA
Statistics
Matches: 9039, Mismatches: 1260, Indels: 879
0.81 0.11 0.08
Matches are distributed among these distances:
837 1 0.00
838 179 0.02
840 4 0.00
842 174 0.02
843 7 0.00
844 62 0.01
845 5 0.00
846 61 0.01
847 10 0.00
848 23 0.00
849 23 0.00
850 7 0.00
851 1 0.00
852 2 0.00
853 5 0.00
854 4 0.00
855 2 0.00
856 18 0.00
857 2 0.00
858 10 0.00
859 18 0.00
860 4 0.00
861 1 0.00
863 2 0.00
864 45 0.00
865 8 0.00
866 14 0.00
867 16 0.00
868 8 0.00
869 22 0.00
870 11 0.00
871 17 0.00
872 13 0.00
873 8 0.00
874 44 0.00
875 5 0.00
877 1 0.00
878 4 0.00
879 18 0.00
880 9 0.00
881 2 0.00
882 18 0.00
883 2 0.00
884 5 0.00
885 58 0.01
886 2 0.00
887 2 0.00
888 10 0.00
889 179 0.02
890 544 0.06
891 947 0.10
892 21 0.00
893 318 0.04
894 65 0.01
895 5 0.00
896 434 0.05
897 438 0.05
898 591 0.07
899 297 0.03
900 187 0.02
901 317 0.04
902 496 0.05
903 1718 0.19
904 512 0.06
905 3 0.00
906 1 0.00
910 3 0.00
911 7 0.00
912 4 0.00
915 3 0.00
918 6 0.00
919 6 0.00
920 8 0.00
921 18 0.00
922 7 0.00
923 5 0.00
924 7 0.00
925 8 0.00
926 1 0.00
927 2 0.00
928 3 0.00
929 1 0.00
930 2 0.00
931 7 0.00
932 5 0.00
933 2 0.00
934 4 0.00
935 2 0.00
936 12 0.00
937 17 0.00
938 6 0.00
939 3 0.00
940 12 0.00
941 16 0.00
942 2 0.00
943 4 0.00
944 9 0.00
945 19 0.00
946 19 0.00
947 3 0.00
948 1 0.00
949 3 0.00
950 11 0.00
951 8 0.00
954 4 0.00
955 3 0.00
956 2 0.00
957 3 0.00
959 1 0.00
960 2 0.00
963 2 0.00
966 3 0.00
967 1 0.00
968 6 0.00
972 3 0.00
973 4 0.00
974 4 0.00
975 3 0.00
976 8 0.00
977 6 0.00
978 13 0.00
979 3 0.00
980 7 0.00
981 6 0.00
982 4 0.00
983 4 0.00
984 4 0.00
985 5 0.00
986 6 0.00
987 7 0.00
988 2 0.00
989 8 0.00
990 9 0.00
991 8 0.00
992 3 0.00
993 3 0.00
994 2 0.00
995 2 0.00
996 4 0.00
997 1 0.00
999 6 0.00
1001 3 0.00
1003 1 0.00
1005 2 0.00
1008 2 0.00
1009 1 0.00
1010 3 0.00
1011 1 0.00
1012 4 0.00
1013 4 0.00
1016 1 0.00
1017 17 0.00
1018 2 0.00
1019 3 0.00
1020 5 0.00
1021 13 0.00
1022 16 0.00
1023 14 0.00
1024 318 0.04
1025 291 0.03
1026 275 0.03
1027 276 0.03
1028 234 0.03
1029 180 0.02
1030 228 0.03
1031 303 0.03
1032 243 0.03
1033 254 0.03
1034 187 0.02
1035 192 0.02
1036 817 0.09
1037 167 0.02
1038 163 0.02
1039 205 0.02
1040 176 0.02
1041 159 0.02
1042 147 0.02
1043 151 0.02
1044 109 0.01
1045 336 0.04
1046 133 0.01
1047 226 0.03
1048 126 0.01
1049 92 0.01
1050 89 0.01
1051 107 0.01
1052 83 0.01
1053 378 0.04
1054 215 0.02
1055 103 0.01
1056 201 0.02
1057 108 0.01
1058 244 0.03
1059 357 0.04
1060 210 0.02
1061 139 0.02
1062 120 0.01
1063 115 0.01
1064 96 0.01
1065 108 0.01
1066 190 0.02
1067 170 0.02
1068 430 0.05
1069 194 0.02
1070 116 0.01
1071 107 0.01
1072 130 0.01
1073 130 0.01
1074 549 0.06
1075 88 0.01
1076 61 0.01
1077 667 0.07
1078 64 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC
GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCC
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
Found at i:5093725 original size:26 final size:26
Alignment explanation
Indices: 5093695--5093747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5093685 GTTGACTTAG
*
5093695 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5093721 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5093747 G
1 G
5093748 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5093868 original size:185 final size:185
Alignment explanation
Indices: 5093536--5093954 Score: 540
Period size: 185 Copynumber: 2.3 Consensus size: 185
5093526 GTTGGCTTAG
* * * * * * *
5093536 GCATACAGCGTTCATTCCTAGTCTAAGA-TCAGACCGGACCGAGGGTTATGGTAGCAGGATTGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGA-ACCGGACCAAGGGTTACGATAGCAGGATCGGC
* * * *
5093600 AACACATAGAGGGGGACCCGTTCGATCCCCAGCTTGCGCATCCCGCCTCTCTGGCTGGCTGAGTG
65 AACACATAGAGGGGGACCCGTTCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCG
* * * *
5093665 CCCGCATGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
130 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
5093721 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTACGATAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTACGATAGCAGGATCGGCA
* * * *
5093786 GCATGCA-A-AGGGGGACCCGTTCGATCCCC-GATTTGTGCATCTCACCTCTCTGGCCGACTGAG
66 ACA--CATAGAGGGGGACCCGTTCGATCCCCAG-CTTGCGCATCCCACCTCTCTGGCCGACTGAG
*
5093848 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
128 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5093906 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCCGACCTAGGGTTAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTAC
5093955 AGCAGCACAT
Statistics
Matches: 202, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
184 1 0.00
185 196 0.97
186 3 0.01
187 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.24
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTACGATAGCAGGATCGGCA
ACACATAGAGGGGGACCCGTTCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGC
CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5093910 original size:26 final size:26
Alignment explanation
Indices: 5093880--5093932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5093870 GTTGACTTAG
* *
5093880 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5093906 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5093932 G
1 G
5093933 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5094810 original size:26 final size:26
Alignment explanation
Indices: 5094772--5094824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5094762 ATTGACTTAG
* *
5094772 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5094798 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5094824 G
1 G
5094825 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5095703 original size:26 final size:26
Alignment explanation
Indices: 5095663--5095715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5095653 GTTGACTTAG
*
5095663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
5095689 GCATAGGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5095715 G
1 G
5095716 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5096590 original size:25 final size:26
Alignment explanation
Indices: 5096562--5096611 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5096552 ATTGACTTAG
5096562 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5096587 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5096612 TGATCGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5097504 original size:26 final size:26
Alignment explanation
Indices: 5097465--5097517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5097455 GTTGACTTAG
*
5097465 GCATATGGACTTCATTTCCAGTCTAA
1 GCATACGGACTTCATTTCCAGTCTAA
*
5097491 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGACTTCATTTCCAGTCTAA
5097517 G
1 G
5097518 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGACTTCATTTCCAGTCTAA
Found at i:5098392 original size:25 final size:26
Alignment explanation
Indices: 5098359--5098411 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
5098349 TGGGTTAACT
*
5098359 TAGGTATAC-GAGTTCATTCCAAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
*
5098384 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
5098410 TA
1 TA
5098412 AGATTGGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCAAGTC
Found at i:5099293 original size:26 final size:26
Alignment explanation
Indices: 5099264--5099316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5099254 GTTGACTTAG
*
5099264 GCATACGAAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
5099290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5099316 G
1 G
5099317 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5101757 original size:26 final size:26
Alignment explanation
Indices: 5101718--5101770 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5101708 GTTGACTTAG
5101718 GCATACGGTATTCATTCCCAGTCTAA
1 GCATACGGTATTCATTCCCAGTCTAA
5101744 GCATACGG-AGTTCATTCCCAGTCTAA
1 GCATACGGTA-TTCATTCCCAGTCTAA
5101770 G
1 G
5101771 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGTATTCATTCCCAGTCTAA
Found at i:5103524 original size:26 final size:26
Alignment explanation
Indices: 5103494--5103546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5103484 GTTGACCTAG
5103494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5103520 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5103546 G
1 G
5103547 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5104433 original size:26 final size:26
Alignment explanation
Indices: 5104397--5104449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5104387 GTTGACTTAG
*
5104397 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5104423 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5104449 G
1 G
5104450 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5105336 original size:26 final size:26
Alignment explanation
Indices: 5105300--5105352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5105290 GTTGACTTAG
*
5105300 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5105326 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5105352 G
1 G
5105353 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5106244 original size:26 final size:26
Alignment explanation
Indices: 5106206--5106258 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5106196 GTTGACTTAG
*
5106206 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5106232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5106258 G
1 G
5106259 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5107138 original size:26 final size:26
Alignment explanation
Indices: 5107109--5107161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5107099 GTTGACTTAG
*
5107109 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5107135 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5107161 G
1 G
5107162 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5107560 original size:904 final size:901
Alignment explanation
Indices: 5102620--5112532 Score: 12833
Period size: 903 Copynumber: 11.0 Consensus size: 901
5102610 GTTGACTTAG
* * *
5102620 GCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGGTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5102685 CTCGGGCATCTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* **
5102750 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGCACGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5102815 CGATGGGTGCTGGTTCTTGGCCCTTATATTGGGCCCCTATCCATCATCAAACCTCGAGAATTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5102880 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCCATTAAAATGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5102945 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5103010 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTGC-TTCTGAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
*
5103074 AATTTTAAAAAATCTCGAACC-ACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5103138 TGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5103203 CATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
5103268 CGCAACCCGTCTCTCTGGCCGGCATAGTGCCTGCCCG--CCCGCCCGCTCGTTTCTTCGGTTGGC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * *
5103331 TTAGCCATACGGAGTTCATTCCTAGTCTAAAATCAGATTGGACCAAGGGTTGCGGCAGTAGGATC
714 TTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* ** * **
5103396 GACAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGAATGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
5103461 GCGCCCGCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5103520 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCACATTCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * ** * *
5103585 CTCGGGCATGTGCTGGTACCTTATTTTTCTTCATCGGGGCATCATCACCTGAGCATTGCC-GAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAG-AG
* *** * ** * *
5103649 AACCTGACCGGCATAATTGGGGTTTCGGTGATTGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
5103714 ACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5103779 CACTCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5103844 TGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGTGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * **
5103909 GTGCATTTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * *
5103974 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGACT
455 AATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
5104039 TGCCATGAAACTTCACGGGCATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5104104 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
5104169 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCAGCCCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CC-GCCCGCTCGTTTCGTCGGTTGG
* * * * * *
5104234 CTTAGGCGTATGGAGTTCATTCCAGTGTAAGATCGGACTGGACCGAGGGTAGCGGCAGCAGGATC
713 CTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
5104299 GACAACACACAGAGGAGGACCCGGTCGATCCCCAGCTTGCGTATCCCGCCCCT-TCGGCTGGCTG
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTG
*
5104363 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5104423 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGGTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
5104488 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* ** **
5104553 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGCACAAACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5104618 CGATGGGTGCTGGTTCTTGGCCCTTATATTGGGCCCCTATCCATCATCAAACCTCGAGAATTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5104683 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5104748 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5104813 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTGC-TTCTGAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
5104877 AATTTTAAAAAATCTCGAACC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5104941 TGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5105006 CATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
5105071 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCAGCCCGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CC-GCCCGCTCGTTTCGTCGGTTG
* * * * * *
5105136 GCTTAGGCGTATGGAGTTCATTCCAGTGTAAGATCGGACTGGACCGAGGGTAGCGGCAGCAGGAT
712 GCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
5105201 CGACAACACACAGAGGAGGACCCGGTCGATCCCCAGCTTGCGTATCCCGCCCCT-TCGGCTGGCT
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCT
*
5105265 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5105326 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
5105391 CTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCATCATCACCTGAGCATTGCC-GAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAG-AG
* *** * ** * *
5105455 AACCTGACCGGCATAATTGGGGTTTCGGTGATTGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
5105520 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
5105585 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGTTA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5105650 TGGGGACACCTTTTT-AAATTGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
5105714 -TTCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGCCCAAAACACCTTCCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * * * *
5105778 AATTTGAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAGAATAGAAAATGAGTTGTCT
455 AATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5105843 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5105908 ATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5105973 GCATCCCGTCTCTCTGACCAGCGTAGTGCGCACCCGCCCGTTCGCCCGCCCGCTCGTTTCGTCGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGT--G--CCCGCCCG--CCCCCGCCCGCTCGTTTCGTCGG
** * * * ** * *
5106038 TTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGCGGCGGGAGTA
709 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * * * * * **
5106103 GGATTGGCTGCACGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCGCGTCCCGTCTTTCTGGCCG
773 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
5106168 GTTGAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
838 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5106232 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
5106297 CTCGCGCATGTGCTGGTGCCACATTTTTCTTTATCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
5106362 ACCTGA-CTAGCGGCATTGGGGTTCC-AGCGATC-GGGGGGTCGGGGCGGATGTGCGCTCATGAT
131 ACCTGACCGA-CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGAT
* * *
5106424 GTACAATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5106489 CACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
5106554 AATGGGGACACTTTTTTCAAATGGTCACAAAACCATGTAAACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5106619 TTGTGCATGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
5106684 AAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGA
453 AAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
5106749 CTTGCCATGAAACTTCACGGGCATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5106814 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
5106879 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCAGCCCGCTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CC-GCCCGCTCGTTTCGTCGGTT
* * * *
5106944 GGTTTAGGCTTACGGAGTTCATTCCAGTGTAAGATCAGACCGGTCCGAGGGTTGCGGCAGCAGGA
711 GGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
5107009 TCGACAACACACAGAGGGGGACCTGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCCGGCTGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5107074 GAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5107135 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5107200 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* *
5107265 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGTGCCGGCGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * * * * *
5107330 GCAATAGGTGCCGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
5107395 CACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAATGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5107460 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5107525 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-GCCTTCCTAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTTCGAAA
* * ** * * *
5107589 AAATTTTAAAAAATC-CTGAACCGCAGAAAGTTTTGAAGATCGTAAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAATCTC-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5107653 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTGACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5107718 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5107783 GAGCATGCCGTCTCTCTGGCCGACGTAGT--------G--CCCGCCCGCTCGTTTCGTCGGTTGG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * *
5107838 CTTCGGTGTACGGAGTTCATTCCAGTCTAAGAT-AGGACCGGATCGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
5107902 CGGTAGCATGCAGAGGGGGTCTCGATCGATCCCCGGCTTGCACATCTCGCCCCTCTGGCCTGCTG
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * ** *
5107967 AGCGCCCGCACACTCGTTTCGTTGGTTGACTTAGGCATACAAAGTTCATTTCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * **
5108027 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCCACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5108092 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTG-CTGGAGCATCACC-GAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCAG-A
* * ** ** *
5108155 GAACCTGATCGACGGAATTGGGGTTTTGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * * *
5108220 TACGATGGGTGGTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAAAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
5108285 ACACCACCTTAAAGAGCATCTAAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5108350 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATCTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5108415 TGTGCAAGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* *
5108480 AAATTTTAAAAAATCTCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5108545 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
5108610 CATTGGCAT-CTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTT
584 CATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
5108674 GCGCATCCTGTCTCTTTGCCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTAGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCGTCGGTT
* * * * ** * ** *
5108739 CGCTTAGGCATACGGAGCTAATTCCCAGTCTAAGATCAGACCAG-CTAAGGGTTACGATAGTAGG
711 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * **
5108803 ATCAGAAGCATGCAGAGGGGGACCCAG-CTGATCCCCGGCTTGCGCATCCCTTCCCTCTGGCCGG
775 ATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
5108867 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT-A
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** * * *
5108929 -C----GGAGTTCAATCTCAGTCTAAGATCGGACTAGATTGAGGGTCGCGGTAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
5108989 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGACACCATCGTCGGAGCATCACCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
5109054 ACCTGACCGACGACATTGGGGTTTC-AGCGATC-GGGGGGCC-GGGGGGTGTTCGCACATGATCT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
5109116 GTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
5109181 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTATAGTCTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
5109246 TGGGGAGACTTTTTTCAAATGGTCACAAAATGTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTG
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5109311 GCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** ** *
5109376 AATTTTAAAAAATCTCAAACC-ACAAAAAGTTTTGAAAATTGTGAAAAACAGAAAACGAGTCGTC
455 AATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5109440 TTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5109505 CATTGGCATGCAGAAATATGATGATGAGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
5109570 CGCATCACGTCTCTCTAGCCGGGGTAGTGCCCGCCCG--CCCGCCAACTCTTTTCGTCGGTTGGC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
5109633 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGCATC
714 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * **
5109698 GGTAGCATGCAGAGGGGTACCCGGTCGATCCCCGACTTGTGCATCCCACCCCTCTTACCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
5109763 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTGTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
5109822 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACTGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
**
5109887 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CATAATC---G--TCG--A-AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * *
5109941 ACCTGACCGACGGCATTGGGGTTTCGATGATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5110005 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
5110070 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5110135 GGGGACACTTTTTCCAAATGGTGACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5110200 TGCCTGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGG-TAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** * * *
5110264 ATTTTAAAAAATCCCGAATAGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5110329 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5110394 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5110459 CATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCG--CCCGCCCGCTCGTTTCATCAGTTGGCTT
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * * * *
5110522 AGGCATATC-GAGTTCATTCCCA-TCTAAGATTGGACAGAACTGAGGGTTACGACAGCAGGATAG
716 AGGCATA-CGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
** * * * ** *
5110585 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGTAGCCCGCCGTTCTAGCCGGCTGAG
779 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
5110650 CACCCGCACGTTCCTTTTGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5110708 GCATATGGAGTTCATTCCCAGTCTAAGATC-GTACCAGACCGAGGGTTACGCCAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * **
5110772 GCTCAGGCATGTGCTAGTGCCGCCTTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * * *
5110837 AACCTGACCAACGGCGTTGGGGTTCCGACGATCGGGGGTGCCGGTGGCGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATG
* *
5110902 TGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5110967 ACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5111032 ATGGGGACACTTTTTCCAAATGGTGACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
5111097 TGTGCATGCCAACAAAACTACAAGTG-TCACGTGTAAAAAGTTTGGGG-CAAAACTCCTTCCGAA
389 TGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * *
5111160 AAAATTTCAAAAAATCAT-GAACCGTAAAATGTTTCAAAAATCATGAAAAATAAAAAACGAGTCA
453 AAAATTTTAAAAAATC-TCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
5111224 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * *
5111289 GGCTTTGGCACACAGAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *** *
5111354 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCTGCCCTTTCGCTTC-ATTCGTCGG
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CCCGCCCGC-TCGTTTCGTCGG
* ** * * * * *
5111418 TTGGCTTAGGTATACAAAATTCATTCCCATTCTAAGATCGGACCAGACCGGATTCGAGGTTTGTG
709 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT-----CAGACCGGA-CCGAGGGTTGCG
* * * * * * * *
5111483 GTAGCAGGATCGGTAGCATGCAGAGGGAGACCCGGCCAATCCCCGGCTTGTGCATCCCGCCCCTT
767 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** * *
5111548 TGGCCGGCTGAGCGCTCGCACACTCGTTTTAAT-GGTTGACTTAGGCATACAGAGTTCATTCCTA
832 TGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
5111612 G--T--
896 GTCTAA
* * *
5111614 -C--AT--AG---------A-TC--AGATC--A---GACCGAGGGTTTCGGTAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5111657 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCATCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* ** * * *
5111722 ACCTGACCGGCGGCATTGGGGTTCTAACGATCGAGGGGGCC-GGGGGGTGTGCGCAAATGACGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5111786 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGGACTCAT
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
5111851 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTGAAGTATCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5111916 GGGGACACTTTTTTCAAGTGCTCACAAAATCTTGTACACTCCGAGTTTTTGGCTGAA-TTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
5111980 TGCATTCCTACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** * *
5112045 ATTTTAAAAAATCTCGAACC-ATAAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCATCT
456 ATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5112109 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
5112174 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATTGTTCCACAACTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** ** * *
5112239 GTGTCCCGTCTCTCTGGCCAACGTAGTGCCTGCCCGCTCGCCCGCCCGCTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CCCGCCCGCTCGTTTCGTCGGTTGG
** * * *
5112304 CTTAGGCATACGGAGTTCATTCCAGTCTAAGATC-GAACTAGACCAAGGGTTACGGCAGCAAGAT
713 CTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * ** **
5112368 CGGTAGCACGCAGAGGGGGACTCGATCAATCCTCGGCTTGCGCATCTAGCCCCTCTGGCCAACTG
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
5112433 AGCACCCGCA-GCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCTCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5112492 GCATACGAAGTTCATTCCCGGTCTAAGATCGGACCAGACCG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
5112533 GGGGGGGTGT
Statistics
Matches: 7888, Mismatches: 987, Indels: 276
0.86 0.11 0.03
Matches are distributed among these distances:
873 4 0.00
874 31 0.00
875 77 0.01
876 6 0.00
879 1 0.00
880 1 0.00
881 58 0.01
882 445 0.06
883 4 0.00
884 115 0.01
885 1 0.00
886 225 0.03
887 307 0.04
888 245 0.03
889 10 0.00
890 6 0.00
891 511 0.06
892 449 0.06
893 6 0.00
894 4 0.00
895 468 0.06
896 10 0.00
897 160 0.02
898 93 0.01
899 476 0.06
900 610 0.08
901 264 0.03
902 58 0.01
903 1759 0.22
904 576 0.07
905 64 0.01
906 423 0.05
907 46 0.01
908 260 0.03
909 5 0.00
910 106 0.01
911 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5108038 original size:26 final size:26
Alignment explanation
Indices: 5108001--5108053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5107991 GTTGACTTAG
*
5108001 GCATACAAAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
5108027 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5108053 G
1 G
5108054 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5109848 original size:26 final size:26
Alignment explanation
Indices: 5109796--5109848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5109786 GTTGACTTAG
* *
5109796 GCATACGGAGTTCAATCCTAGTGTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
5109822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
5109848 G
1 G
5109849 AGCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:5110718 original size:26 final size:26
Alignment explanation
Indices: 5110682--5110734 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5110672 GTTGACTCAG
5110682 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5110708 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5110734 G
1 G
5110735 ATCGTACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5111213 original size:26 final size:27
Alignment explanation
Indices: 5111164--5111214 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
5111154 TCCGAAAAAA
***
5111164 TTTCAAAAAATCATGAACCGTAAAATG
1 TTTCAAAAAATCATGAAAAATAAAATG
5111191 TTTC-AAAAATCATGAAAAATAAAA
1 TTTCAAAAAATCATGAAAAATAAAA
5111215 AACGAGTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.25
Consensus pattern (27 bp):
TTTCAAAAAATCATGAAAAATAAAATG
Found at i:5112503 original size:26 final size:26
Alignment explanation
Indices: 5112466--5112518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5112456 GTTGACTGAG
* *
5112466 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5112492 GCATACGAAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5112518 G
1 G
5112519 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5113275 original size:26 final size:26
Alignment explanation
Indices: 5113239--5113291 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5113229 GTTGACTTAG
*
5113239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
5113265 GCATACAGAGTTTGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5113291 G
1 G
5113292 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5115025 original size:26 final size:26
Alignment explanation
Indices: 5114995--5115073 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
5114985 GTTGACTTAG
5114995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5115021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5115047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5115073 G
1 G
5115074 ATCAGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5116678 original size:747 final size:747
Alignment explanation
Indices: 5115244--5116742 Score: 2229
Period size: 747 Copynumber: 2.0 Consensus size: 747
5115234 TGATGTGTGA
*
5115244 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
5115309 CCCATAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGCTGAAATGGG
66 CCCATAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGGCTGAAATGGG
*
5115374 GACACTTTTTTCAAATGATCACAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
131 GACACATTTTTCAAATGATCACAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5115439 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGGCTTCCGAAAAAAT
196 CATGCCAACAAAAATAAAAGGATCACGTCTAACAAGTTTGGGGCCAAAATGCCTTCCAAAAAAAT
* * *
5115504 TTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
261 TTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
5115569 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATT
326 CATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5115634 GGCATGTAGAAATATGAAGATGTGCCCCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
391 GGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGATTGCGCA
* * * * * *
5115699 TCCCGTCTCTCTGGCCGGCGTAGTGCTAGCCCACCCGCCCGCCCGCTTGTTTCGTCGATTGGCTT
456 TCCCGTCTCTCTGGCCGACATAGTGCCAGCCCACCCGCCCGCCCGATTGTTTCATCGATTGGCTC
* * *
5115764 AGGCATACGAAGTTCATTCCCAGTCTAACATCAGACCGGACCGAGGTTTACGGCAGCAGGATGGG
521 AGGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGACAGCAGGATGGG
* * * **
5115829 CAGCACGTAGAGGGGGACCCGTTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCTGGTAGAGC
586 CAGCACGCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCTGGTAGAGC
* ** *
5115894 GCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATATGG
651 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGG
5115959 AGTTCATTCCCAGTCTAAGATCGGACCAGACCG
716 AGTTCATTCCCAG-CTAAGATCGGACCAGACCG
5115992 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * * *
5116057 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
66 CCCATAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGGCTGAAATGGG
* * *
5116122 GACACATTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
131 GACACATTTTTCAAATGATCACAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** *
5116186 CATGCCAACAAAAATGCAAGGATCACGTCTAAGAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAA
196 CATGCCAACAAAAATAAAAGGATCACGTCTAACAAGTTTGGGGCCAAAA-TGCCTTCCAAAAAAA
* * * * *
5116250 TTTCAAAAAATCTCGAACCGCAAAGAGTTTCAAAAATTATGAAAAATAGAAAATGGGTCGTCTTG
260 TTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5116315 CCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
5116380 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGCGC
390 TGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGATTGCGC
* * * * *
5116445 ATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCGCTC-ATTCGTTTCATCGGTTGGC
455 ATCCCGTCTCTCTGGCCGACATAGTGCCAGCCCACCCGCCCGCCCGATT-GTTTCATCGATTGGC
* * * * * ** * *
5116509 TCAGGCATGC-AGAGTTCAATT-CGAGTTTAAGATCAGACCAGACTGAGGGTTGTGATAGTAGGA
519 TCAGGCATACGA-AGTTC-ATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGACAGCAGGA
* *
5116572 TTGGTAGCACGCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGG-TCGGC
582 TGGGCAGCACGCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCT-GG-
* ** *
5116636 T-GAGCGCCCGCTCGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
645 TAGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGC
*
5116700 ATACGGAGTTCATTCCCAGCTAGGATCGGACCAGACCG
710 ATACGGAGTTCATTCCCAGCTAAGATCGGACCAGACCG
*
5116738 AGGGT
1 TGGGT
5116743 TACGGCAGCA
Statistics
Matches: 672, Mismatches: 73, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
746 26 0.04
747 498 0.74
748 148 0.22
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (747 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCATAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGGCTGAAATGGG
GACACATTTTTCAAATGATCACAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATAAAAGGATCACGTCTAACAAGTTTGGGGCCAAAATGCCTTCCAAAAAAAT
TTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGATTGCGCA
TCCCGTCTCTCTGGCCGACATAGTGCCAGCCCACCCGCCCGCCCGATTGTTTCATCGATTGGCTC
AGGCATACGAAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGACAGCAGGATGGG
CAGCACGCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCTGGTAGAGC
GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGG
AGTTCATTCCCAGCTAAGATCGGACCAGACCG
Found at i:5117605 original size:26 final size:26
Alignment explanation
Indices: 5117569--5117621 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5117559 AATGACTTAG
5117569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5117595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5117621 G
1 G
5117622 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5118422 original size:26 final size:26
Alignment explanation
Indices: 5118392--5118441 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5118382 GACTTAGGCG
5118392 TACGGAATTCATTCCCAGTCTAAGCA
1 TACGGAATTCATTCCCAGTCTAAGCA
**
5118418 TACGGCGTTCATTCCCAGTCTAAG
1 TACGGAATTCATTCCCAGTCTAAG
5118442 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAATTCATTCCCAGTCTAAGCA
Found at i:5119323 original size:26 final size:26
Alignment explanation
Indices: 5119287--5119365 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5119277 TTTGACTTAG
*
5119287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5119313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5119339 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5119365 G
1 G
5119366 ATCAAACCAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5120245 original size:26 final size:26
Alignment explanation
Indices: 5120209--5120261 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5120199 TTTGACTTAG
* * *
5120209 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCACTCCCAGTCTAA
5120235 GCATAAGGAGTTCACTCCCAGTCTAA
1 GCATAAGGAGTTCACTCCCAGTCTAA
5120261 G
1 G
5120262 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCACTCCCAGTCTAA
Found at i:5120617 original size:891 final size:891
Alignment explanation
Indices: 5117666--5121482 Score: 4769
Period size: 891 Copynumber: 4.2 Consensus size: 891
5117656 TGGGCTCGAC
** * *
5117666 CATTGGGGTTCTAACGATCGGGGGGCCGGGTGGGGTGTGCGCACATGATGTCCGATGGGTGCTGG
1 CATTGGGGTTCCGACGATCGGGGGG-CTGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
5117731 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
5117796 GCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTATTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5117861 TCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
5117926 AAATACAAGGATCATGTTTACGAATTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAAAT
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAAT
* *
5117991 CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAGTT
323 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTT
*
5118056 CACGTGAAGGTTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
388 CACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
5118121 AATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
* * * * *
5118186 CTGGCC-GACGTAGTGCCCGCCCGCCCGTCCACCC-CTCGTTTCGTCGGTTCGCTTAGGCATACG
518 CTGGCCAG-CGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
* * * *
5118249 GAGTTCATTCCTAGTCTAAGATCAGACTGAACTGAGGGTTGC---G--GCA---GC-ACA--CAG
582 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCATAGTAGGATTGGCAACACGCAG
* * *
5118303 AGGGGGATCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCGGAGCGCCCGCACAC
647 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
* *
5118368 TCGTTTCATGGGTTGACTTAGGCGTACGGAATTCATTCCCAGTCTAAGCATACGGCGTTCATTCC
712 TCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
5118433 CAGTCTAAGATCAGAT-CGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGC-TAGTGCTGG
777 CAGTCTAAGATCGGATCCGGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCAT-GTGCTGG
* * * * ** * *
5118496 TGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGGCGG
841 TG-CGCATTTTTCTTCGTC--GG-------G-CGTAGCATCCCCAAAGAACCTGACCGACGG
* *
5118558 CATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATCGGG-GGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
5118623 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
5118688 CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5118753 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* ** *
5118818 AATACAACGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCT
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * ** * *
5118882 CAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
325 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCA
* *
5118947 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
390 CGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
** * * *
5119012 TATGAAGACATACCTAAACCCACCTACCACCCTATCGATCCATGGGTTACGCATCCCG--TC-C-
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
* * * * *
5119073 GGTCGGCATAGTGCCCGCCCACCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
520 GGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
* * ** ** * * * *
5119138 TTCATTCTCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAATAGGATTGGTAGCACGTAG-G
585 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG-CATAGTAGGATTGGCAACACGCAGAG
* * * **
5119202 AGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGG-TCGAGCGCCCGCACGT
649 -GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACAC
* ** * *
5119266 TCGTTTCGTGTTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
712 TCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
5119331 CAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAAACCGAGGGTTGCGGTAGCAC
777 CAGTCTAAG-AT-C-G-G---A-TCC--G-----G-----ACC--A---AGGGTTACGGTAGCAC
* * * *
5119396 ATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTCTCTTCGTCAGGGCACCATCGTCGGAGCATC
817 ATGCTAGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTC-GGG------CGT---AGCATC
** **
5119461 GTCGGAGAACCTGACCGACGG
871 CCCAAAGAACCTGACCGACGG
* * **
5119482 CATTGGGGTTCCGAAGATCGGGGGGC------ATGTGAACACATGATGTGCGATGGGTGCTGGTA
1 CATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
5119541 CTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTCGACAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
**
5119605 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGT-TCGAAATGGGGACACTTTTTT
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTT
* *
5119669 CAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAA
* * * * *
5119734 AAATACCAGGATCACGTCTTCCAAGTTTGGGACCAAAAATCCTTCC-AAAAAAGTTTTGAAAAAT
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAAT
* * *
5119798 CCCGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAGTT
323 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTT
*
5119863 CACGTGAAGGTTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
388 CACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
5119928 AATATGAAGATGTGCCTAAACCCACCAACCACCCCATCGATCCATGGCTCGCGCATCCTGTCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
5119993 CTGGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
518 CTGGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* * * * *
5120058 AGTTCATTCCCAGTCTAACATTATACCGGACTGAGGGTTGCGATTGTAGGATTGGCAACATGCAG
583 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-ATAGTAGGATTGGCAACACGCAG
** * * * **
5120123 AGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCGTCTGGCCGGCTGAGCTTCCGCACAC
647 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
* ** * * * *
5120188 TCGTTTCGTGTTTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAAGGAGTTCACTCC
712 TCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
5120253 CAGTCTAAGATCGGAT-TGGACCAAGGTTTACGGTAGCATATGCTAGGCTCGGGCATGTGCTGGT
777 CAGTCTAAGATCGGATCCGGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGT
* * *
5120317 GCGGTATTTTTCTTCGTCGGG-GTAGCATCCCCAAAGAATCTGACTGACGG
842 GC-GCATTTTTCTTCGTCGGGCGTAGCATCCCCAAAGAACCTGACCGACGG
* *
5120367 CATTGGGGTT-CGACGAACGGGGGGCTGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTA
1 CATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
5120431 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAAGTCACACCCCCTTATAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
5120496 ATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAGGTGTCTTAAATTGGAACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5120561 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * *
5120626 ATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTCAAAAATCAC
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
5120691 GAACCATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACG-TCA
326 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-GTTCA
* * * *
5120755 GGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAA
390 CGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
5120820 TATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
* * * ** *
5120885 GG-CAGCGTAGTGCCCGCCCGCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCGCACGGAG
520 GGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
* * * * * * * * * *
5120949 TTCATTACCAGTCTAAGATCAAACCAGATTGAGGGTTGCAGTAGCAGGATCGGTAGCACACAGAA
585 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCA-TAGTAGGATTGGCAACACGCAGAG
** * * *
5121014 GGGGACCCGACCGATCCCCTGGCTTATGCATCCCGCCCCTCTGGCC-GCTCAGTGCCCGCACGCT
649 GGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACT
* * *
5121078 CATTTCATGGGTTGACTTAGGCATAC-GAATTTATTCCCAGTCTAAGCATATGGAGTTCATTCCC
713 CGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
5121142 AGTCTAAGATCGG-TCCGGACCGAGGGCTGCGGTAGCACATGTTAGGCTCGGGCATGTGCTGGTG
778 AGTCTAAGATCGGATCCGGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTG
* ** ** *
5121206 CTGCATTTTTCTTCGTCGAGGCACTATCACAGGAGCATCGTCGGAGAACCTGACCGACGA
843 C-GCATTTTTCTTCGTCG-GG--------C-GTAGCATCCCCAAAGAACCTGACCGACGG
* *
5121266 CATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCATAGGATGTGCGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
5121331 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
5121396 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
5121461 CAAATGGTCACAAAATCTTGTA
195 CAAATGGTCACAAAATCTTGTA
5121483 AAGGCTTGCC
Statistics
Matches: 2536, Mismatches: 300, Indels: 169
0.84 0.10 0.06
Matches are distributed among these distances:
884 13 0.01
885 54 0.02
886 63 0.02
887 3 0.00
888 107 0.04
889 341 0.13
890 323 0.13
891 407 0.16
892 26 0.01
893 3 0.00
895 5 0.00
896 51 0.02
897 1 0.00
898 123 0.05
899 34 0.01
900 8 0.00
901 186 0.07
902 1 0.00
905 1 0.00
906 2 0.00
907 1 0.00
909 1 0.00
911 1 0.00
914 2 0.00
915 1 0.00
916 148 0.06
917 109 0.04
918 179 0.07
919 4 0.00
920 3 0.00
921 5 0.00
922 229 0.09
923 8 0.00
924 92 0.04
925 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
CATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCAC
GTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
GCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCATAGTAGGATTGGCAACACGCAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGT
TTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGATCCGGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCGC
ATTTTTCTTCGTCGGGCGTAGCATCCCCAAAGAACCTGACCGACGG
Found at i:5121126 original size:25 final size:26
Alignment explanation
Indices: 5121098--5121149 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5121088 GTTGACTTAG
*
5121098 GCATA-CGAATTTATTCCCAGTCTAA
1 GCATATCGAATTCATTCCCAGTCTAA
* *
5121123 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATCGAATTCATTCCCAGTCTAA
5121149 G
1 G
5121150 ATCGGTCCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATATCGAATTCATTCCCAGTCTAA
Found at i:5123604 original size:25 final size:26
Alignment explanation
Indices: 5123569--5123620 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5123559 GTTGACTTAG
5123569 GCATACAGAGTT-ATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5123594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5123620 G
1 G
5123621 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5124475 original size:26 final size:26
Alignment explanation
Indices: 5124439--5124494 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
5124429 TGGGTTGACT
*
5124439 TAAGCATACGGAGTTAATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCAAGTC
*
5124465 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTAATTCCAAGTC
5124491 TAAG
1 TAAG
5124495 ATTGGATCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCCAAGTC
Found at i:5126381 original size:868 final size:863
Alignment explanation
Indices: 5122512--5130477 Score: 8131
Period size: 868 Copynumber: 9.1 Consensus size: 863
5122502 CTTGCGCATC
* * * * *
5122512 CCGCCGGCTCCTTTCGTCGGTTGGCTTAGTCATACAGAGTTCATTCCCAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * ** * * ** * *
5122577 GA-CGAAGGGTTACAGTAGCAAGATTGATAGCACATAAAAGGGGACCCGGGCGATCCTCGGCTTA
66 GATC-AAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* ** * * * *
5122641 CGCATCCCGTCCCTCTAACCGGTTGAGCGCCCGTACGCTTGTTTCGTGCGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAT
* * * *
5122706 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
195 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGG
* *
5122771 CATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCGTCGGAGAACTTGA
260 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGAACCTGA
* * * * * *
5122836 TCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGAGGGTGTGCACACATGACGTACGATGG
314 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
5122900 GTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCC-CTATCAAACCTTGAGAACTCACACCCC
379 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACACCCC
*
5122964 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
443 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
5123029 CACTTTTTTCAAAT-GTCAC-AAATCTTGTACACTT-GAAGTGTTTAGTTGAATTTTTTTATGCA
508 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCA
* *
5123091 TGCCAAC-AAAATACAAGGATCACGTCTACC-AGTTTGGGGTCAAGAACTCCTACCG-AAAAATT
572 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCGAAAAAATT
* ** * * *
5123153 TAAAAAAATCTTGAACCGTAAAAACTTTCAGAAATCATGGAAAATAGAAAAACGAGTCGTCTTGC
636 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGC
5123218 CAATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTTATGAATTTACAAGCCA-ATAAAATGG
700 C-ATGAAACTTCACGTGAAGGCTTAA-GGGACCATTG-TATGAATTTACAAGCCATA-AAAATGG
** * * *
5123282 CATTGGCACATAGAAATATGAAGATGTGCCT-AACCCACCTACCACGCTGATCGATCTATGGCTT
761 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTT
* * *
5123346 GCGCATCTCATCTCTCTGGGCCGACGTA----G-CTGCCA
825 GCGCATCCCGTCTCTCT-GGCCGACGTAGTCCGCCCGCCA
* *
5123381 --GCCCGCTTCGTTTCAATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
1 CCGCCCGC-TCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ** *
5123444 CAGACCGAGGGTTGCTGCAGCATGATCTG-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGACT
64 CAGATCAAGGGTTGCGGTAGCAGGATC-GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* * * * * *
5123508 TGTGCATCCTGCCCCTCTGGCCGGCTGAACGCCTGCAAGCTTGTTTCATGGGTTGACTTAGGCAT
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGAC-T-----T
* *
5123573 ACAGAGTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
187 --AG-G-------CA---T----AT--GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * ** *
5123638 GTTACGACAGCACATGCTGGGCTCGAGCATGTGCCAGTGCCGTATTTTTC-T--TC---G-----
233 GTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * ** *
5123692 T---CGGAGAACCTGACCGACGACATTGGGGTTTCGACGATC--GGGGG--GTTGGGGTGTGCGT
298 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* * * *
5123750 ACAGGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCTCCTATCCTTCATCAAACCTC
363 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
5123815 GTGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTCAAG
428 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
5123880 TGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTG
493 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* ** *
5123945 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTA--ATAGTTTGGGGACAAAACTC
558 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTC
* * **
5124008 CTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
622 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
5124073 CGAGTTGTCTAGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
687 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * * *
5124138 TAAAAACGGTATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCATCCTATCGATC
752 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
5124203 CACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGT
817 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-CC-GCCCG-CC-A
* * * *
5124254 CCGCCCGCTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCTAGTCTATGATCCA-ACC
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACC
* * * * * * * ***
5124318 -GAATCAAGGGTTGTGATAGCAGGATTGACAGTATGCAGAGGGGTACCCGACCGATCCGTAGCTT
65 AG-ATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * *
5124382 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACGCTTGGTTT-GTGGGTTGACTTAAGCAT
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTT-GTTTCGTGGGTTGACTTAGGCAT
* * *
5124446 ACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATTGGATCAGACCGCG
193 ATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C----C--------G----GACCGAG
* * * * * ** *
5124511 GGTTGCGATAGCACATGCTAGGCTCGGGCAAGTGCTGGTTCGGCATTTTTCTTCACCGCGGCACC
232 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * *
5124576 AACTTCGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCAGGGGGGTCGG
297 -A--TC---G-----CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * * * *
5124641 GGGGGCGCGCACAAATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCC
351 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
5124706 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
416 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
5124771 TAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCG
481 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5124836 AG-TTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTA-CAA-TATCT
546 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-T-T
* *
5124898 GGGGTCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
609 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
5124963 GAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
674 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
5125028 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTACATAAACCCACCTAC
739 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *** * * *
5125093 CACCCTATCGTTTCACAATTTTCGCATCCCGTTTCTCTGGCCGACGTAGT--GCCC-AC-
804 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCGCCCGCCA
*
5125149 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC
* * * * * * * *
5125213 -GATTCGAGGGTTGTGGCAGCAGGATCAACAGTACGCAGAGGGGGACCTGGTCGATCCCCAGCTT
65 AGA-TCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * * *
5125277 GCGCATCCCGCCCCTTTGGCCAGCTGAGCGCCTGCACGCTCGTTTTGTGGGTCGATTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
* * * * **
5125342 TGGAGTGCACTCCCACTCTAAGATCGGACCGGACTGAGGGTTATGGTAGCACATGCTGGGCTCGG
194 TGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGG
* * * * * * * *
5125407 GTATGTGCTAGTGCTGTATTTTTCTTCATCGAGG-ACCATCGTCGGAGCATCACCGGAGAACCTG
259 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--ACC--TG-ACC-G
* *
5125471 ATCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATG
317 ---A-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
5125535 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
378 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
5125600 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCCGTAGCCATTAAAGTGTCCGAAATGGGGA
443 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
5125665 CACTTTTTTCAACTGGTCGCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
508 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
5125730 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
573 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
5125795 AAAAACTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
638 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
5125860 GAAACTTCAAGTGAAGGCTTAAGGGACCACTGTATCAATTTACAAGCCAGAAAAATGGCATTGGC
703 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
5125925 ACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
768 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
5125990 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCA
833 CGTCTCTCTGGCCGACGTAGT--CCGCCCG-CCA
* * * * *
5126024 TCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATCAAATC
1 -CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* *
5126089 AGATCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGTTTG
65 AGATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * * *
5126154 CGCATCCCGCCGCTCTAGCCAGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAT
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAT
* * *
5126219 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
195 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGG
* * * * * *
5126284 CATGTGCTAGTGCCACATTTTTGTTCGTCGGGGCGCCATCGCCGGAGAACTTGACCAACGGCATT
260 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATT
* *
5126349 GGCGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTA-
325 GGGGTTCCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
5126413 TGTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACAGT-GAGAACTCACACCCCCTTAAAGAG
389 T-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACACCCCCTTAAAGAG
* *
5126477 CATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
452 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5126542 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAA
517 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * *
5126607 AATACAAGGATCTCGTCTACCAAGGTTGGGACCAAAAATCTTTCCGAAGAAATTTTAAAAAATCC
582 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
5126672 CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCA
647 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
5126737 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCATGCAGAAA
712 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * * *
5126802 TATGAAGATGTCCCTAATCCCACTTACCACCCTATCGATCCACGGCTTGCGCATTCCTTCTCTCT
777 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
5126867 GGCC-AGCGTAGT------GCCA
842 GGCCGA-CGTAGTCCGCCCGCCA
* * *
5126883 --GCCCGCTCGTTTCGTCGGTTCGCTTAGGCATATGGAATTCATTCCCAGTCTAAGATCAGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
5126946 GACCGAGGGTTACGGTAGTAGGATCGACAGCACACA-ACGGAGGACCCGATCGATCCCTGGCTTG
66 GATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGA-GGGGGACCCGATCGATCCCCGGCTTG
* * *
5127010 CGCATCCCG-CCCTCTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATA
130 CGCATCCCGCCCCTC-TGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGAC-T-----TA
* *
5127074 CGGAGTTCACTCCCAATCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
188 --G-G--------C-A--T----ATG--GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * ** *
5127139 GTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCA
233 GTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * ** *
5127204 TCGTCGGAGCATCGTCAGAGAACCTGATCGACGGTATTGGGGTTCCGGTGATCGGGGAGGCC---
298 ---TC---GC--CG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
5127266 GGGG-GTG-G----T-A--TGC-------GC--ATACTTGGCCCTTATATTGGCCCCCTATCCCT
352 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5127313 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
417 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* ** *
5127378 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTTGACTTTGA
482 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
5127443 GTTTCTAGCTGAATGTTTTTT-TGCACG-CAA-AAGAAAGTACAAGGATTACGTCTACCAAGTTT
547 GTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAA-AAA-TACAAGGATCACGTCTACCAAGTTT
* * **
5127505 GGGGCCAAAACTCCTTCCGAAGAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGT
609 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
5127570 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATG
674 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5127635 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTAC
739 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5127700 TACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGT------GCCA
804 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCGCCCGCCA
* * ** *
5127754 --GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATTGGACTA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** ** * * * * *
5127817 GATGAAGCATTATGGCAGCAGGATCGACAGCACGTAGTGGGGAACCCGA-CTGATCCCCGGGTTG
66 GATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTG
* * * * **
5127881 TGCA-CCTTGCCCCTCTGGCCAGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
130 CGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
** * *
5127945 CAGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCAAGCCTAAGATCGGGGCTGGACTGAG
194 TGGAGTTCATTCCC-A-GT---C-TA---AG---A-T-C--G-----GA-C----C-GGACCGAG
*
5128010 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
232 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
5128075 ATCGTCGGAGCATCGTCGGAGAACCTGGCCGACGGCATTGGGGTTCTGGA-GATC-GGGGGGCCG
297 A---TC---G---C--CGGAGAACCTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGGCCG
* *
5128138 GGGGGGTGTGCGCAC---A---G-GA----TG-TGGTACTTGGCCTTTTTATTGGCCCCCTATCC
350 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5128191 CTCATCAAACCTTGAGAACTCACACCCCCTTAAACAGCAATTGAGATTTTACAGGTTTGCTGCCA
415 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
5128256 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAATTGGTCGCAAAATCTTCTACACTTC
480 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5128321 -AGGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTT
545 GA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * * *
5128385 GGGGCCAAAAATCCTTCCGAAAATTTTTTGAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTAT
609 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * *
5128450 GGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGCGACCATTGTATG
674 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * ** *
5128515 AATTTACAAGCCATAAAAATACCATGGGCACATAGAAATATGAAGATGTGCCAAAACCCACCTAC
739 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5128580 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTATGGTCGACGTAGTACCCACCCG-C-
804 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--CCGCCCGCCA
* * * * *
5128640 CCGCCCGGTCGTTTCATCTGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
5128705 GAT-AGAGGGTTACGGCAACAGGATCAGCACCAGGATCGGCAACAAGCAGAGGGGGACCCGATCG
66 GATCA-AGGGTT---G---C-GG-T-AG---CAGGATCGACAGCACGCAGAGGGGGACCCGATCG
* * * *
5128769 ATCACCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTG
118 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
5128834 ACTTAGGCATACGGAGTTCATTTCCAGTCTACGCATACCGAGTTCATTCCCAGTCTAAGATCGGA
183 AC-T-----TA--G-G--CA--T--A---T--G------GAGTTCATTCCCAGTCTAAGATCGGA
* *
5128899 CCGGACCGAGGGTTGCAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCG
222 CCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
5128964 TCAGGGCACCATCGTAGGAGGATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCCGACAATCG
287 TCGGGGCA-C--C--------ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
5129029 GGGGGGTC-GAGGGGTGTGCGCACAGGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGC
341 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
5129093 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTCGAGATTTTACAAGT
406 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
5129158 TTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
471 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
5129223 GTACACTTTGAGTTTCTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
536 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * ** *
5129288 CCAAGTTTGCGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAATCTTGAACCGTAAAAAATTTCA
601 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
5129352 AAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
666 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
5129417 ATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAAC
731 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
5129482 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCC
796 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--CCGCC
5129547 CG-C-
859 CGCCA
* * * * *
5129550 CCGCGCGCTTGTTTCGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * **
5129615 GACCAAGGGTTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTAT
66 GATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * * * * * * * *
5129680 GCATCACACCCTTATAGCTGGCTCAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGATG
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATG
* * *
5129745 GAGTTCATTCCCAGTCTAAGCATAC-GA-AGTGACCAAGGGTTGTGGTAGCACATGCTGGGCTCG
196 GAGTTCATTCCCAGTCTAAG-AT-CGGACCG-GACCGAGGGTTGCGGTAGCACATGCTGGGCTCG
* ** *
5129808 GGCATGTGCTAGTGCCATATTTTTCTGCGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACCT
258 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---C-C-GGAGAACCT
* * * *
5129873 GACCGACGGCATTGGGGTTCTGGCGAT---------CGGGGGGGTGCGCGCACATGATGTACGAT
312 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
5129929 GGGTGCTGGTACTTGGCTCTTATATTGGCCTCCTATCCCTCATCAAACTTTGAGAACTCACATCC
377 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
5129994 CCTTAAAGAGCTTTTGAGATTTTACAGGGTTGCTGCGAGTAGCCATTAAAATGTCTGAAATTGGG
442 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5130059 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TATTTTGTGCA
507 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
5130123 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTT
572 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
5130188 TAAAAAATCTCGAACCG-AAAAAGTTT-AAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
637 TAAAAAATCCCGAACCGTAAAAAGTTTCAA-AAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
5130251 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTG
701 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * *
5130316 GCACGCAAAAATATGAAGATGTGCCTGAACTCACATACCACCCTATGGATCCACGGGTTGCGCAT
766 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
5130381 CCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGT
831 CCCGTCTCTCTGGCCGACGTAGT--CCGCCCG-CC-A
*
5130418 CCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
1 CCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5130478 CATATGGAAT
Statistics
Matches: 6017, Mismatches: 733, Indels: 691
0.81 0.10 0.09
Matches are distributed among these distances:
845 12 0.00
846 1 0.00
847 2 0.00
848 20 0.00
849 2 0.00
850 3 0.00
851 3 0.00
852 1 0.00
853 1 0.00
854 4 0.00
855 6 0.00
856 152 0.03
857 9 0.00
858 3 0.00
859 3 0.00
860 4 0.00
861 1 0.00
862 8 0.00
863 6 0.00
864 273 0.05
865 288 0.05
866 207 0.03
867 231 0.04
868 843 0.14
869 309 0.05
870 17 0.00
871 574 0.10
872 198 0.03
873 228 0.04
874 68 0.01
875 15 0.00
876 253 0.04
877 17 0.00
878 3 0.00
879 8 0.00
880 414 0.07
881 7 0.00
882 92 0.02
883 2 0.00
885 5 0.00
887 5 0.00
888 70 0.01
889 5 0.00
890 3 0.00
891 3 0.00
892 6 0.00
893 37 0.01
894 88 0.01
895 176 0.03
897 4 0.00
898 84 0.01
899 148 0.02
900 90 0.01
901 13 0.00
902 54 0.01
903 395 0.07
904 3 0.00
905 2 0.00
906 4 0.00
907 2 0.00
908 1 0.00
909 1 0.00
910 272 0.05
911 233 0.04
912 2 0.00
913 2 0.00
914 1 0.00
915 1 0.00
917 2 0.00
920 2 0.00
921 1 0.00
924 1 0.00
925 1 0.00
926 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GATCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATG
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTCCGCCCGCCA
Found at i:5128517 original size:880 final size:880
Alignment explanation
Indices: 5125337--5130413 Score: 5850
Period size: 871 Copynumber: 5.8 Consensus size: 880
5125327 GTCGATTTAG
* * * * * **
5125337 GCATATGGAGTGCACTCCCACTCTAAGATCGGACCGGACTGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * * *
5125402 CTCGGGTATGTGCTAGTGCTGTATTTTTCTTCATCGAGG-ACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
5125466 ACCTGATC-AGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCACACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCGGA-GATCG-GGGGGCCGGGGGGGTGTGCGCACA--A--T
* *
5125529 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 G-GA----TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
5125594 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCCGTAGCCATTAAAGTGTCCGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5125659 TGGGGACACTTTTTTCAACTGGTCGCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATGTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
5125724 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAA
*
5125789 AATTTTAAAAACTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
5125854 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCACTGTATCAATTTACAAGCCAGAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5125919 ATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
573 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5125984 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCCGCTCGTTTCGTCAGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGT--------G-CCA---GCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
5126049 CTTAGGCATACGGAGTTCATTCCTAGCCTAAGATCAAATCAGATC-AAGGGTTGCGGTAGCAGGA
691 CTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGA-CGAAGGGTTACGGCAGCAGGA
* * * * *
5126113 TCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGTTTGCGCATCCCGCCGCTCTAGCCAGCT
755 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5126178 GAGCACCCGCACGCTTGTTTCATGGGTTGAC-T-----TA--G-G--------C-A--T--
820 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
5126217 --AT--GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
5126278 CTCGGGCATGTGCTAGTGCCACATTTTTGTTCGTCGGGG------CG-C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
5126332 ACTTGACCAACGGCATTGGCGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATAATGT
131 ACCTGACCGACGGCATTGGGGTTCGGA-GATC-GGGGGG-CCGGGGGGGTGTGCGCAC--AA--T
* **
5126397 GCGATGGGTGCTGGTA-TGTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACAGTGAGAACTC
189 G-GA----TGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
5126461 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5126526 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
5126591 TGTGCTTGCCAAAAAAAATACAAGGATCTCGTCTACCAAGGTTGGGACCAAAAATCTTTCCGAAG
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-
* * *
5126656 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
5126721 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5126786 CATGGGCATGCAGAAATATGAAGATGTCCCTAATCCCACTTACCACCCTATCGATCCACGGCTTG
572 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
5126851 CGCATTCCTTCTCTCTGGCCAGCGTAGTGCCAGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATAT
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
5126916 GGAATTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTACGGTAGTAGGATCGACAGCACA
702 GGAATTCATTCCCAGTCTAAGATCAGACCAGA-CGAAGGGTTACGGCAGCAGGATCGACAGCACG
* *
5126980 CA-ACGGAGGACCCGATCGATCCCTGGCTTGCGCATCCCG-CCCTCTTGGCCGGCTGAGCACCCG
766 CAGA-GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCTGAGCACCCG
* *
5127043 CACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCACTCCCAATCTAA
829 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * * *
5127095 GCATGCAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * * *
5127160 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
5127225 ACCTGATCGACGGTATTGGGGTTCCGGTGATCGGGGAGGCC---GGGG-GTG-G-----T--ATG
131 ACCTGACCGACGGCATTGGGGTT-CGGAGATCGGGG-GGCCGGGGGGGTGTGCGCACAATGGATG
* **
5127278 C-GCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
194 CTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
5127342 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* ** * * *
5127407 TTTTTTCAAATGGTCACAAAATATTGTTGACTTTGAGTTTCTAGCTGAATGTTTTTT-TGCACG-
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGC
*
5127470 CAA-AAGAAAGTACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGAAATTTT
387 CAACAA-AAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAATTTT
* *
5127534 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
449 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5127599 GAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
514 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
5127664 ATGCAGAAATATGAAGATGTGCCTAAACCCACTTACTACCCTATCGATCCACGGCTTGTGCATCC
579 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
5127729 CGTCTCTTTGGCCGGCGTAGTGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAATTC
644 CGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTC
** * * ** * * *
5127794 ATTCCCAGTCTAAGATTGGACTAGATGAAGCATTATGGCAGCAGGATCGACAGCACGTAGTGGGG
709 ATTCCCAGTCTAAGATCAGACCAGACGAAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * * *
5127859 AACCCGA-CTGATCCCCGGGTTGTGCA-CCTTGCCCCTCTGGCCAGCTGAGCGCCCACACGCTCA
774 GACCCGATC-GATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
*
5127922 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
837 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * * *
5127966 GCATATGGAGTTCATTCCAAGCCTAAGATCGGGGCTGGACTGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGTAGCACATGCTGG
* *
5128031 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
5128096 AACCTGGCCGACGGCATTGGGGTTCTGGAGATCGGGGGGCCGGGGGGGTGTGCGCAC-A-GGATG
130 AACCTGACCGACGGCATTGGGGTTC-GGAGATCGGGGGGCCGGGGGGGTGTGCGCACAATGGATG
* *
5128159 -TGGTACTTGGCCTTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * *
5128223 AACAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
5128288 TTTTTCAATTGGTCGCAAAATCTTCTACACTTC-AGGTTTTTACCTGAATTTTTTTGTGCATGCC
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5128352 AACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAATTTTTTGAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-ATTTTAAA
* ** *
5128417 AAATCCCGAACTGTAAAAAGTTTCAAAAATTATGGAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** * *
5128482 ACTTCACGAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATACCATGGGCACA
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
5128547 TAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * *
5128612 CTCTATGGTCGACGTAGTACCCACCCGCCCGCCCGGTCGTTTCATCTGTTGGCTTAGACATACGG
647 CTCTCTGGCCGGCGTAGT-GCCA---GCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *
5128677 AGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTTACGGCAACAGGATCAGCACCAGGAT
704 AATTCATTCCCAGTCTAAGATCAGACCAGACGA-AGGGTTACGGCAGCAGGATC-G-A-C---A-
* * *
5128741 CGGCAACAAGCAGAGGGGGACCCGATCGATCACCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
761 --GC-AC--GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
5128806 AGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAC
821 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
5128866 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
5128931 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTAGGAGGATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
5128996 ACCTGACTGGCGGCATTAGGGTTCCGACAATCGGGGGGGTC-GAGGGGTGTGCGCACAGGATGTA
131 ACCTGACCGACGGCATTGGGGTTCGGA-GATC-GGGGGGCCGGGGGGGTGTGCGCACA--ATG--
**
5129060 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
190 -GA----TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * *
5129125 ACCCCCTTAAACAGCATTCGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5129190 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAAATTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5129255 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCAAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAA
** * * *
5129320 ATTTT-AAAAATCTTGAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5129384 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5129449 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
574 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5129514 CATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCGCGCTTGTTTCGTCAGTTGGCTTAG
639 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCAG--C-C-CGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5129579 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGGCA
696 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGACGAAGGGTTACGGCAGCAGGATCGACA
* * * ** * * * * * * * *
5129644 GCATGCAGAGGGGGACCCGACCGATCCCTGGCTTATGCATCACACCCTTATAGCTGGCTCAGCGC
761 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
5129709 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGATGGAGTTCATTCCCAGTCTAA
826 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
*
5129764 G----C--A--T-A----C-G---AAG-T--GACC--A---AGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * ** *
5129804 CTCGGGCATGTGCTAGTGCCATATTTTTCTGCGTCGGGGCACCATCACCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * **** * * * *
5129869 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGTGCGCGCACATGATGTACGATGGGTG
131 ACCTGACCGACGGCATTGGGGTTC-GGAGATCGGGGGGCCGGGGGGGTGTG-CGCACAATGGATG
* * * *
5129934 CTGGTACTTGGCTCTTATATTGGCCTCCTATCCCTCATCAAACTTTGAGAACTCACATCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * * * *
5129999 AAGAGCTTTTGAGATTTTACAGGGTTGCTGCGAGTAGCCATTAAAATGTCTGAAATTGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
5130064 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TATTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
5130128 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAA
* *
5130193 AATCTCGAACCG-AAAAAGTTT-AAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAA
453 AATCCCGAACCGTAAAAAGTTTCAA-AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5130256 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * * *
5130321 CAAAAATATGAAGATGTGCCTGAACTCACATACCACCCTATGGATCCACGGGTTGCGCATCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
5130386 CTCTCTGGTCGGCGTAGTGCCCGCCCGC
647 CTCTCTGGCCGGCGTAGTGCCAGCCCGC
5130414 CCGTCCGCCT
Statistics
Matches: 3638, Mismatches: 427, Indels: 288
0.84 0.10 0.07
Matches are distributed among these distances:
855 5 0.00
856 155 0.04
857 2 0.00
858 1 0.00
859 3 0.00
860 6 0.00
862 2 0.00
863 2 0.00
864 252 0.07
865 177 0.05
866 43 0.01
867 7 0.00
868 456 0.13
869 3 0.00
870 13 0.00
871 623 0.17
872 141 0.04
873 104 0.03
874 9 0.00
875 4 0.00
876 89 0.02
878 7 0.00
879 9 0.00
880 407 0.11
881 16 0.00
882 87 0.02
884 6 0.00
885 1 0.00
886 1 0.00
887 2 0.00
888 71 0.02
889 7 0.00
890 2 0.00
891 1 0.00
892 7 0.00
893 34 0.01
894 4 0.00
897 2 0.00
898 100 0.03
899 127 0.03
900 129 0.04
901 5 0.00
902 1 0.00
903 1 0.00
904 1 0.00
906 2 0.00
907 1 0.00
909 1 0.00
910 270 0.07
911 227 0.06
912 7 0.00
913 3 0.00
914 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCGGAGATCGGGGGGCCGGGGGGGTGTGCGCACAATGGATGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCA
GTCTAAGATCAGACCAGACGAAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:5128876 original size:26 final size:26
Alignment explanation
Indices: 5128840--5128890 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5128830 GTTGACTTAG
* *
5128840 GCATACGGAGTTCATTTCCAGTCTAC
1 GCATACCGAGTTCATTCCCAGTCTAC
5128866 GCATACCGAGTTCATTCCCAGTCTA
1 GCATACCGAGTTCATTCCCAGTCTA
5128891 AGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAC
Found at i:5131384 original size:26 final size:26
Alignment explanation
Indices: 5131352--5131404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5131342 GTTGACTTAG
*
5131352 GCATACGGATTTCATTCCCACTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
*
5131378 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
5131404 G
1 G
5131405 ATCGATCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCACTCTAA
Found at i:5133165 original size:26 final size:26
Alignment explanation
Indices: 5133135--5133187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5133125 GTTGACTTAG
*
5133135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5133161 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5133187 G
1 G
5133188 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.