Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 45 of 120
Found at i:5134953 original size:26 final size:26
Alignment explanation
Indices: 5134923--5134975 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5134913 GTTGACTTAG
5134923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5134949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5134975 G
1 G
5134976 ATCTAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5136712 original size:26 final size:26
Alignment explanation
Indices: 5136676--5136754 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
5136666 GTTGACTTAG
5136676 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5136702 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5136728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5136754 G
1 G
5136755 ATCGGACTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5137638 original size:26 final size:26
Alignment explanation
Indices: 5137601--5137653 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5137591 ATTGACTTAG
5137601 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
5137627 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5137653 G
1 G
5137654 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5138358 original size:26 final size:26
Alignment explanation
Indices: 5138322--5138374 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5138312 GTTGACTTAG
5138322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5138348 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5138374 G
1 G
5138375 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5138812 original size:731 final size:721
Alignment explanation
Indices: 5137416--5138837 Score: 2011
Period size: 731 Copynumber: 2.0 Consensus size: 721
5137406 CGCCCGCCCA
* * * * *
5137416 CCCGCTCGTTTCATCGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCGGAT
1 CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAC
* * *** * * *
5137481 CAAGGGTTGCAGCAGCAGGATTGGTTGCACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCGCA
66 CAAGGGTTGCAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGACTTACGCA
* * *
5137546 TCCCACCCTTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGATTGACTTAGGCATACAAAG
131 TCCCACCCCTCTGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGATTGACTTAGGCATACAAAG
* *
5137611 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
196 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
* * *** *
5137676 GGCACCACATGCTGGGCACCAGCATATGCTGGTGCCGCATTTTTCTTCGTTGGGGAACCATCGTC
261 GACACCACATGCTGGGCACCAGAATATGCTGGTGCCGCATTTTTCTTCCCAGGGGAACCATCGCC
* ** * *
5137741 GGAGAACTTGACAGGCAGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCACAT
326 GGAGAACCTGACAGGCAGCATTAAGGTTCCAGCGATCGGGGGGGTCCGGGGGGGTGTGCGCACAT
* *
5137806 GATGTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
391 GATATACGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
5137871 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
456 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
* *
5137936 TCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
521 TCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATT
* * *
5138001 TCTTTGTACATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGTCCAAAACACCTTCC
586 TCTTTATACATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACATTCC
* * *
5138066 GAAAAAATTTTAAAAAATCTTGTACCGCAAAAACTTTCAAATGGCCGACGTAGTGCCTGCCCGCC
651 GAAAAAATATTAAAAAATCCTGAACCGCAAAAACTTTCAAATGGCCGACGTAGTGCCTGCCCGCC
5138131 TGCTCG
716 TGCTCG
*
5138137 CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGAC
1 CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAC
* ** * * * *
5138202 CGAGGGTTGTGGCAGCAAGATCGACAGCACATAGAGGGGGACTC-GACCGATCCCTGGCTTACGC
66 CAAGGGTTGCAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAG-CCGATCCCCGACTTACGC
* * * * **
5138266 ATCTCGCCCCTCTGGTCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
130 ATCCCACCCCTCTGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGATTGACTTAGGCATACAAA
* * **
5138331 GTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGGTCGAGGGTTA
195 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
* * * *
5138396 CGACAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGC
260 CGACACCACATGCTGGGCACCAGAATATGCTGGTGCCGCATTTTTCTTC-CCAGGG-------G-
* * *
5138461 CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCAGCGATCGGGGGGG-CCGGGGGG
316 -A-ACCATCGCCGGAGAACCTGACAGGCAGCATTAAGGTTCCAGCGATCGGGGGGGTCCGGGGGG
* **
5138525 TTGTGCGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
379 GTGTGCGCACATGATATACGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
5138590 CAAACCTTGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
444 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5138655 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGT
509 AATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGT
* * * *
5138720 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTAGCAAGTTTGGGGCC
574 TTTAGCTGAATTTCTTTATACATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCC
* ** * *
5138785 AAAACTCATTTTGAAAATATATTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
639 AAAACACATTCCGAAAAAATATTAAAAAATCCTGAACCGCAAAAACTTTCAAA
5138838 AATCATGAAA
Statistics
Matches: 610, Mismatches: 79, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
720 1 0.00
721 264 0.43
722 3 0.00
729 1 0.00
731 296 0.49
732 45 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (721 bp):
CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAC
CAAGGGTTGCAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGACTTACGCA
TCCCACCCCTCTGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGATTGACTTAGGCATACAAAG
TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
GACACCACATGCTGGGCACCAGAATATGCTGGTGCCGCATTTTTCTTCCCAGGGGAACCATCGCC
GGAGAACCTGACAGGCAGCATTAAGGTTCCAGCGATCGGGGGGGTCCGGGGGGGTGTGCGCACAT
GATATACGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
TCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATT
TCTTTATACATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACATTCC
GAAAAAATATTAAAAAATCCTGAACCGCAAAAACTTTCAAATGGCCGACGTAGTGCCTGCCCGCC
TGCTCG
Found at i:5139227 original size:26 final size:26
Alignment explanation
Indices: 5139198--5139250 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5139188 GTTGACTTAG
*
5139198 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5139224 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5139250 G
1 G
5139251 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5140081 original size:26 final size:26
Alignment explanation
Indices: 5140051--5140101 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5140041 GTTGACTTAG
*
5140051 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5140077 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5140102 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5140450 original size:815 final size:825
Alignment explanation
Indices: 5139428--5141067 Score: 2146
Period size: 853 Copynumber: 2.0 Consensus size: 825
5139418 GGTATTCGGC
** * *
5139428 CCTTATATTGGCCCCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
1 CCTTATATTAACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
5139493 ATTTTACAAGTTTGCTACCAGTAGCCATTTAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGC
66 ATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGC
5139558 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAG
131 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAG
* *
5139623 GATCACGTCTACCAACTTTG-G-GGC-CG-AAA-TG-CAT-T-C-T-G-AAAATCATGAAAAATA
196 GATCACGTCTACCAACTTTGAGAGCCTCGAAAATTGAAATCTACGTAGTAAAATCATGAAAAATA
* *
5139677 GAAAATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTA-AGGGACCATTGTATGAATTTAC
261 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGA-GGACCATTGTATGAATTTAC
* *
5139741 AAGCTAT-AAAAATGGCATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCT
325 AAGCCATAAAAAATGGCATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
5139805 ATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGCAGTGCCCGCCCGCCTACCCGCCCG
390 ATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCCCC
* * *
5139870 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA-GATCGGACCAGATCAA
455 CTCATTTCGTCGGTTGG-ATAGGCATACGGAGTTCATTCCCAATCTAAGGCT-AGACCAGATCAA
* * * * *
5139934 GGGTTGCGACAGTAGGAACTA-CAGCATGTAGAGAGGGTCTCGACCTAT-CCTCGGCTTACGCAC
518 GGGTTGCGACAGCAGGAAC-AGCAGCATGCAGAGAGGGACCCGACCAATCCCT-GGCTTACGCAC
* * *
5139997 TCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCATGTGTTGACTTAGGCATACGGAGT
581 TCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
* * * * * *
5140062 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACTGGATCGAGGGTTACG
646 TCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACG
* * ** *
5140127 TTC-GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCC
711 -GCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCC
5140191 GGAGCATCACCAAAGAACCTGACCACCGACGTTGGGGTTCCGGTACTTGGG
775 GGAGCATCACCAAAGAACCTGACCACCGACGTTGGGGTTCCGGTACTTGGG
5140242 CCTTATATTAACCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTAACC-CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5140307 GATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
65 GATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5140372 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATT-CCAACAAAAATACA
130 CCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-TTGCCAACAAAAATACA
* * *
5140436 AGGATCATGTCTACCAAGTTTGTAGCCAAAACTCCTTACGAAAAAATTTGAAAAAATCTCGAACC
194 AGGATCACGTCTACCAACTTTG-AG-----A-GCC-T-CG--AAAA-TTG---AAATCT---A-C
*
5140501 GTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAA
240 GT----AG--T--AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
5140566 GGCTTAGAGGACCATTGTATGAATTTACAAGCCATAAAAAATGTCATTGGCACGTAGAAATATGA
297 GGCTTAGAGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTAGCACGTAGAAATATGA
* * * *
5140631 AGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCG
362 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCG
* * * **
5140696 GCGTAGTGCCTGCCCGCCCGCCCGCCCCCTTGTTTCGTCGGTTGGATAGGCATACGGAGTTCATT
427 GCGCAGTGCCCGCCCGCCCACCCGCCCCCTCATTTCGTCGGTTGGATAGGCATACGGAGTTCATT
* * * * ** * *
5140761 CCTAGTCTAAGGCTAGACCGGATCGAGGGTTGCGGTAGCAGGATCAGCAGCATGCAGAGGGGGAC
492 CCCAATCTAAGGCTAGACCAGATCAAGGGTTGCGACAGCAGGAACAGCAGCATGCAGAGAGGGAC
** * * ** * *
5140826 CCGGTCAATCCCTGGCTTACGCATTCCACCCCTCTGGCCGGCTGAGCGCCTTCATGCTCGTTTCG
557 CCGACCAATCCCTGGCTTACGCACTCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCA
*
5140891 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCCAAGCATACAGAGTTCATTGCCAGTCTAA
622 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAA
* *
5140956 GATTGGACTAGACCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCATATTT
687 GATCGGACTAGACCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCACATTT
* * **
5141021 TTCTTCATCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGACC
752 TTCTTCATCGGGGCACCATCGCCGGAGCATCACCAAAGAACCTGACC
5141068 GACGGCATTG
Statistics
Matches: 703, Mismatches: 77, Indels: 53
0.84 0.09 0.06
Matches are distributed among these distances:
814 11 0.02
815 190 0.27
816 2 0.00
817 1 0.00
824 1 0.00
827 2 0.00
830 3 0.00
832 2 0.00
836 2 0.00
837 1 0.00
842 1 0.00
843 1 0.00
848 1 0.00
852 2 0.00
853 352 0.50
854 131 0.19
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (825 bp):
CCTTATATTAACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGC
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAG
GATCACGTCTACCAACTTTGAGAGCCTCGAAAATTGAAATCTACGTAGTAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGAGGACCATTGTATGAATTTACA
AGCCATAAAAAATGGCATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCCCCC
TCATTTCGTCGGTTGGATAGGCATACGGAGTTCATTCCCAATCTAAGGCTAGACCAGATCAAGGG
TTGCGACAGCAGGAACAGCAGCATGCAGAGAGGGACCCGACCAATCCCTGGCTTACGCACTCCAC
CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGC
ACATGCTAGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCA
TCACCAAAGAACCTGACCACCGACGTTGGGGTTCCGGTACTTGGG
Found at i:5142351 original size:903 final size:902
Alignment explanation
Indices: 5140232--5153099 Score: 16344
Period size: 902 Copynumber: 14.3 Consensus size: 902
5140222 TTGGGGTTCC
* ** * *
5140232 GGTACTTGGGCCTTATATTAACCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5140297 GAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5140362 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* ** * *
5140427 AAAAATACAAGGATCATGTCTACCAAGTTTGTAGCCAAAACTCCTTACGAAAAAATTTGAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
5140492 TCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
5140557 TCACGTGAAGGCTT-AGAGGACCATTGTATGAATTTACAAGCCATAAAAAATGTCATTGGCACGT
326 TCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGT
* * *
5140621 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCTGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTC
* * * *
5140686 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCCCTTGTTTCGTCGGTTGG-ATAGGCATA
453 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
5140750 CGGAGTTCATTCCTAGTCTAAG-GCTAGACCGGATCGAGGGTTGCGGTAGCAGGATC-AGCAGCA
518 CGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCAGGATCGA-CAGCA
* ** * * * * *
5140813 TGCAGAGGGGGACCCGGTCAATCC-CTGGCTTACGCATTCCACCCCTCTGGCCGGCTGAGCGCCT
581 CGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
5140877 TCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCCAAGCATACAGAGTT
645 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * **
5140942 CATTGCCAGTCTAAGATTGGACTAGACCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTG
710 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
*** * * **
5141007 CTGGTGCCATATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGACCGACG
775 CTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
** *
5141072 GCATTGGGGTTCTAACGATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
840 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5141134 GGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5141199 GAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTTGTCTAAAATGGGGACACTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGTCTGAAATGGGGACACTT
** * *
5141263 TTTTCAAATTATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGA
130 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5141328 CAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCC-AAAATAATTTTAAAA
195 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAA
* * *
5141392 AATCTTGAATCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
259 AATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
**
5141457 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
324 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
5141522 AGAAATATGAAGATGTGCCTAAATCCACCTACCACTCTATCGATCCACAGCTTGTCG-TCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGATCCCGTC
* * * * *
5141586 TCCCTGGTCGGCGTAGTGCCCGCCTGCCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
453 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
5141651 CGGAGTTCAATCCCAGTCTAAGATCAGACCCGATCGAGGGTTGCGGTAGC-GAGATCGACAGCAC
518 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAG-GATCGACAGCAC
* * * *
5141715 GCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCCC-CTCCCTCTGGCCAGCTAAGCGCCCG
582 GCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGC-CCCTCTGGCCGGCTGAGCGCCCG
* * *
5141779 CACACTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCAAGTCTAAGCATACAGAGTTC
646 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
* * * * *
5141844 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGACAGCACATGCTAGGCTCGAGCATGTGC
711 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * *
5141909 TGGTGCTGCATTTTTCTTCGCCAAGCCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGA
776 TGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
5141974 CATTGGGGTTCCGACGATCGGGGGCGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
841 CATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
5142037 GGCACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACAGCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5142102 GAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
5142167 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAT
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* ** * **
5142232 AAAAATACAAGGATCACGTCTACCACGTTTGGTTCAAAAACTCCTTCAAAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
5142297 T-TCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
261 TCT-CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
5142361 TTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCATGCA
325 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
** * * *
5142426 GAAATGCGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCGCATCCCATCT
390 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCT
** * * * * * * *
5142491 CTCTGGCCGGCGTAACGGCTGCCCACCTGCCCGCCCACTCATTTTGTCGGTTGGCTTAGGCATAC
454 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * *
5142556 GGAGTTTATTCCCAGTCTAAGATCAGATTGAACTGAGGGTTGCGGTAGTAGGATCGACAGCACGC
519 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * * * *
5142621 AGAGGGGGACCCGACCGATTCC-CGACTTACACATGCCGCCCCTCT-GCTCGACTGAGCGCTCGC
584 AGAGGGGGACCCGACCGA-TCCTCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGC
5142684 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T----AT--A-AG---A
647 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
* * *
5142737 TT----G-----GATC-G----GATCGAGTGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCT
712 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *
5142788 GGTG-TCGCATTTTTCTTCGTCGAGG---CA-C-T------ATCGCCGGAGAACCTGACCGACGG
777 GGTGCT-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
* * * ***
5142841 CATTGGGGTTCCAATGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGCATGATGGGTGCT
841 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
5142903 GGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
5142967 GAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
5143031 TTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * ** *
5143096 TAAAATACAAGGATCACGTCCAACAAGTTTGGGAACAAAACTCCATCCGAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
5143161 TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCTTGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
5143226 TCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCACAAAAATGGCATTGACACGTAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
5143291 AAATATGAAGATATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCGTCCCGTCTC
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* * * * * * * *
5143356 TCTGGCTGACGTTGTGCCCCCCCGTCTGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** **
5143421 GAGTTCATTCCCAGTCTAAGACCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACATA
520 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
* ** * * * * *
5143486 GAGGTGGACCCGGTCGATCCTCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGTACG
585 GAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
5143551 CTCGTTTCGTGGATTGACTTAGGCATACGGAGTTGATTCCTAATATAAGCATACAGAGTTCATTC
650 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
* * * * *
5143616 CCAGTCTAAGATCGGATCAGACCGAGGGTTGA-GGCAACACTTGTTGGGCTCGGGCATTTGCTGG
715 CCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * ** *
5143680 TG-TCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCTG-CAGC
779 TGCT-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GACGGC
* ** * *
5143743 ATTGGGGTTTCGGTGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGATGGGTGCT
842 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5143804 GGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5143869 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACATTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
5143934 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
5143998 AAAGAATACAAGGATCAGGTCTACCAAG-TTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
196 AAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
5144062 ATC-CTGAACAGTAAAAAGTCTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
260 ATCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
5144126 CTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
324 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
5144191 AAAAATATGAAGATGTCCCTAAACCCAGCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTC
* * * * * *
5144256 TCTCTGGCTGGCGTAATGCCTGCCCGTCGGCCCGCCCGCTCATTAT-GTCGGTTGGCTTAGGCAT
453 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTT-TCGTCGGTTGGCTTAGGCAT
* * * * * * *
5144320 ATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCA-GAGTTGGCAACA
517 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGA-TCGACAGCA
* ** * * ** *
5144384 CACAGAGGGGGACCCGATTGATCCCCGGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCTG
581 CGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
5144449 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC-GAAGTT
646 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTT
* * * * *
5144513 CATTCCCAGTCTAAGAGCAGATCAGACCGAGGGTTGCGGCAGCAC-TAGTTGGGCTCGGGCATGT
710 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACAT-GCTGGGCTCGGGCATGT
** * * * * *
5144577 GCTGGTGCCACATTTTTCTTCATTGGGGCTCCATCGTCGGAGCATCGCCGGAGAACCTGACTTG-
774 GCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC-CGA
* * * *
5144641 TGGCATTGGGGTTCCGGCGATCAGAGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
838 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
5144705 GGTACTTGGCCCATATCATATT---CCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCCTT
1 GGTACTTGGCCC-T-T-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
5144767 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACAA
63 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
5144832 TTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTGTTTTGTGCATGCC
128 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5144897 AACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGACAAAAATCCTTTCGAAAAAATTTTAAA
193 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
5144962 AAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAAAAAAGGAGTCGTCTTGCCATGAA
258 AAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5145027 ACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
323 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * **
5145092 CACAAATATGAAGATGTGCC-AAACGTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
388 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGT
* * * * * * *
5145156 CTCTCTGGCCGGCGTAAT----GCTCGCCCGCCCGTCCGCTTGTTTAGTCAGTTGGCCTAGGCAT
452 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * *
5145217 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAACAT
517 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCAC
* * * * * *
5145282 GCAGAGGGGGACCTGGCCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCTGACTGAGCGCCTGC
582 GCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * **
5145347 ACGCTCGTTTCATGGGTTGACTTAGGCGTA-TGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
647 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
* * ** * * * *
5145411 TTCCCAGTCTAAGATCGGATCGGACAAAGGGTTGCGACAGCACATACTGGGCCCGGGCATGTGCT
712 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * **
5145476 GGTGCCGTATTTTTCTTCGTCGGGGCACCATC-TCCGGATCATCACCGGAGAACCTGACCGACGG
777 GGTGCTGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGTCGGAGAACCTGACCGACGG
* *
5145540 TATTGGGGTTCC-AGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
841 CATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
5145602 GGTACTTGGCCCTTATTTTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5145667 GAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5145732 TTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAAA
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
5145797 AAAAATACAAGGATGACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
5145862 TC-CTGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAAC
261 TCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
5145926 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACATA
325 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
5145991 GAAATATGAAGATATGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTACGCG-TCCCGTC
390 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT--GCGATCCCGTC
* * * * * * * *
5146055 TCTCTGGCCGACGTTGAGCCCCCCCGTCTGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
453 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
5146120 TGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGACGGTTGTGGCACCAGGATCGACAGCACG
518 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
* * * * ** *
5146185 CAGAGGGGGACCCCACCGATCCTCGGCTTACGCATCCCACCCCTCTGGCAGATTGAGCGCCTGCA
583 CAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
5146250 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCGCAATCTAAGCATACAGAGTTCAT
648 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* ** * * *
5146315 TCCCAGTCTAAGATTGGATTAGATCGAGGGTTGA-GGCAGCACTTGCTGAGCTCGGGCATGTGCT
713 TCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
5146379 GGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGAAGCATCGTCGAAGAACCTGACAGGCGGC
777 GGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGC
* *
5146444 ATTGGGGTTCC-AGCGATCGAGGGGGCCGGGGGGGTGTGCGCCCATGATGTACGATGGGTGCT
842 ATTGGGGTTCCGA-CGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
5146506 GGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTAGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5146571 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAATGGAGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5146636 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
5146701 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTACCAAAAAAATTTAAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
5146766 TCCCAAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTCATCTTGCCATGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
5146830 TGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
5146895 AAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACAGCTTGCGCATCCTG-CAT
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTC-T
* * * *
5146959 CTCAGGGCGACGTAGT--------GCCCG--C-CCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
454 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
5147013 GGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGTTGTAGTAGGATCGACAGCACGC
519 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * *
5147078 TGAGGGGGACCCGATCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
584 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
5147143 GCTCATTTCGTGGGTTGACTGAGGCATACGGAGATCATTCCCAGTC-AAGCATACGGAGTTCATT
649 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* ** *
5147207 CCCAGTCTAAGATCGGACCAGACTGAGGGTTACAACAGCACATGCTGGGCTCGAGCATGTGCTGG
714 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
5147272 TGATGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACTGGAGAACCTGACCGGCGACA
779 TGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCA
*
5147336 TTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTTCT
843 TTGGGGTTCCGA-CGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
5147397 GGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5147462 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5147527 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
5147592 AAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAATTTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * **
5147657 TCCCAAACCGTAAAATGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5147722 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACATAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
*
5147787 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTATCCCGTCTC
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* * * * *
5147852 TCTGGCCAGCGTAGTGACCGCCCGCCTGCCCGCCTGCTTGTTTCGTAC-GTTGGCTTAGGCATAC
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT-CGGTTGGCTTAGGCATAC
* * * * * *
5147916 GGAGTTCATACCCAGTCTAAGAGT-AGACCGGACCGAGGGTTGTGATAGCAAGATTGGCAGCACA
519 GGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
* ** * * * *
5147980 TAGTA-GGGGACCCGGTCAAT-CTCTGAG-TTGCACATCCCGCCCCTCTGGCCGACTGAGTGCCC
583 CAG-AGGGGGACCCGACCGATCCTC-G-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
5148042 ACACGCTCGTTTTGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT
645 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * *
5148107 CATTCCCAGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATCGAACCAAACCGAGGGTTGCGA
710 CATTCCCAG--T---C---T-AAG---------A-TC---G---G-ACCAGACCGAGGGTTACGG
* * * *
5148172 CAACACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGGACCATCGTCGG
749 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * ** *
5148237 AGCATC-ACAGGAGAACCTGACCGACGGCGTTGGGGTTCCGACGATCGGGGGG-TTGGGAGGTGT
814 AGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGT
* **
5148300 GCGCACATGATGTGCTACAGGTGCT
878 GCGCACATGATGTGCGATGGGTGCT
* *
5148325 GGTACTTGGCCCTTATATTGGCCCCC-ATCTCTCATCAAACCCCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5148389 GAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5148454 TTTGAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
5148519 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** *
5148584 TC-CTAAACC-CAAAAAGTTTGCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAAC
261 TCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
5148647 TTCACGTGAAGGCTT-AGGGAAACATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGC
325 TTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * ** * *
5148711 AGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATTAATCCACGGCCTACGCATCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTC
* * ** * * * * *
5148776 TCTCTGGCCGGTGTAGTGCCCGCCTGCCCGTTCGCCCGTTCGTTTTGTTGGTTAGCTTAGACATA
453 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
5148841 CAGAGTTCATTACCAGTCTCAGATCAGA-CGGAACCGAGGGTTACGATAGCAGGATCGACAGCAC
518 CGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ACCGAGGGTTGTGGTAGCAGGATCGACAGCAC
* * *** ** * * * *
5148905 ACAGAGGGGGACCTGGTTGATCCTCAACTTGCACATCCTGCCCCTTTGGCCGGCTGAGCGCCTGC
582 GCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
5148970 ACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGGATACGGAGTTCA
647 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
* *
5149035 TTCCCAGTCTAAGATTGGA-TAGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
712 TTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** * * *
5149099 TGGTG-TCCCATTTTTCTACCCCGGGGCACCATCGTCGGAGCATTGCCGAAGAACCTGACCGACG
776 TGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* ** * * *
5149163 GCATT-GGGTTTCGGTGATCGGGGGGGCCAGGGGGGTGTGCGTACATGATATGCGATGGGTGCT
840 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * ** * **
5149226 AGTAATTGGCCCTTATATTGG-CCTCTATCCCTCATCAAACCTTGTCAACTCGCACTTCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5149290 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACATTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5149355 TTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCTTGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
5149420 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCAAAAAAAATTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
5149485 TCTCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
5149550 TAACGTGAAGGCTTAAGGGAACATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * * * * *
5149615 AAATATAAACATGTGCCTAAACCCACCAACCACCCTATCAATCCACAGCCTACGCATCCCGTCTC
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* ** * *
5149680 TCTGGCCGGCGAAAAGCCCGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGACATACG
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * *
5149745 GAGTTCATTCCCAGTCTCAGATCAGACCAAATCC-AGGGTTATGGTAGTAGGATCGACAGCACAC
520 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * ** * * * *
5149809 AGAGGGAGACCTGGTCGATCC-CTGGCTTGCGCAGCCCACCCCTCTGGTCGGCTGAGCGCCTGCA
584 AGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
5149873 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAGTCTAAGCATACGGAGTTCAT
648 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* *
5149938 TCCCAGTCTAAGATCAGG-CCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
713 TCCCAGTCTAAGATC-GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *
5150002 AGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGC
777 GGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGC
* ** * * * * *
5150067 ATTGGGGTTTCGGTGATCGAGGGGTCTGTGGGGGT-TGTGCACACGATGTGCGATGGGTGCT
842 ATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** *
5150128 GGTAGTTGGCCCTTATATTGGTGCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5150193 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5150258 TTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
5150323 AAAAATACAAGGATCACGTCTGCCAAGTTTGGGG-CAAAAATCCATCTGAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
5150387 TCTCGAACCGTAAAAGGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
5150452 TCACGTGAAGCCTTAAAGGATCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
5150517 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTA
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* * ** * * *
5150582 TCTGGCTGGCGTAGTGCACGCGTGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATATG
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * *
5150647 GAGTTCATTCCCAATCTAACA-CTAGATCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGT
520 GAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * * * * **
5150711 AGAGGGCGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGTGCCCATAC
584 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
5150776 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCAT
649 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA-GAGTTCAT
* * * * *
5150840 TCACAGTCTAAGATCGGACCAGATCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTG
713 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
5150905 GTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGGCCGATGGCA
778 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * * *
5150970 TTGGGGTTTCGACAATCGGGGGGGCC-GGGGGGT-TGTGCACATAATGTGCGATTGGTGCT
843 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
5151029 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACT-TCACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5151093 GAGCACTTGATATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * **
5151158 TTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTATGGATGTGAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
5151223 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATATTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * * *
5151288 TCTCGAATTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
5151353 TCATGTGAAGGCTTAAGGGACCATTGTATCAATTTACAACCCATAAAAATGGCATTGCCACATAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
5151418 AAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCTGTCTC
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* * * * *
5151483 TCTGGCCGACGTAGTGCACGCACGCCCGCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACG
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
5151548 GAGTTCATTCCCAATCTAAGA-CTAGACTGGACCGAGGGTTATGGCAGCAAGATCGGCAGCACAC
520 GAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * * * * *
5151612 AGAGGGGGACTCGACCGATCCCCGCCTGGCACATCCCGCCCCTCTGGTCGGCTGAGCGCCCGTAC
584 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * **
5151677 GCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAGGGAGTTCATT
649 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * * * *
5151742 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAGGTTCGGGCATGTGCTGG
714 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
5151807 TGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
779 TGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* *
5151872 TGGGGTTTCGACGATCGGGGGGGCCGGGGGGGT-TGTGCACATGATGTGCGATGGGTGCT
844 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
5151931 GGTAGTTGGCCCTTATATTGGCACTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5151996 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5152061 TTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
5152126 AAAAATACAAGGATCACGTCTGCCAAGTTTGGGG-CAAAAATCCATCTGAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
5152190 TCTCGAACCGTAAAAGGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
5152255 TCACGTGAAGCCTTAAAGGATCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
326 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
5152320 AAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCATGCCTTGCGCATCCCGTCTC
391 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGTCTC
* * * ** * *
5152385 TCTGGCCGACGTAGT--------TCCCGCCCGCCCACTCGTTTTATCAGTCGGCTTAGGCATACG
455 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
5152442 AAGTTCATTCCCAGTCTAAGATCTA-ACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
520 GAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* ** *
5152506 AGAAGGGGACCCGACTAATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
584 AGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * * *
5152570 CGCTTATTTCGTGTGTTGACTTAGGCATACGGTGTTCATTCCCAGTCCAAGCATACAGAGTTCAT
648 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * ** * *
5152635 TCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGCACATGCTGGGTTCGGGCATGTGCTG
713 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
5152700 GGGCCGCATTTTTCTTCGTCGGGGTACCA---TC---G---C--CGGAGAACCTGACCGACGGTA
778 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * *
5152754 TTAGGGTTTCGATGATC-----G--GGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
843 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * ** *
5152807 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTAAGAACTCACACCCCCATAAA
1 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5152872 GAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAATGGGGACACTTT
66 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5152937 TTTCAAATGGTCGCAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTAC
131 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * * *
5153002 AAAAATAAAAGTATCACATCTACAAAGTTTAGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAA
196 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
5153067 TCTCGAACCATAAAAAATTTTGAAAATCGTGAA
261 TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAA
5153100 GTTCATTCGT
Statistics
Matches: 10519, Mismatches: 1249, Indels: 421
0.86 0.10 0.03
Matches are distributed among these distances:
863 3 0.00
864 516 0.05
865 80 0.01
866 41 0.00
867 42 0.00
870 2 0.00
872 1 0.00
873 3 0.00
874 1 0.00
875 10 0.00
876 233 0.02
877 56 0.01
878 56 0.01
880 1 0.00
882 1 0.00
883 39 0.00
885 5 0.00
886 1 0.00
888 2 0.00
890 64 0.01
891 445 0.04
892 342 0.03
893 5 0.00
894 287 0.03
895 12 0.00
896 154 0.01
897 573 0.05
898 54 0.01
899 12 0.00
900 328 0.03
901 1674 0.16
902 2708 0.26
903 1428 0.14
904 532 0.05
905 6 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 1 0.00
912 1 0.00
913 3 0.00
917 3 0.00
918 1 0.00
921 1 0.00
922 1 0.00
923 2 0.00
924 1 0.00
925 9 0.00
926 373 0.04
927 227 0.02
928 54 0.01
929 1 0.00
930 120 0.01
931 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
Found at i:5144512 original size:26 final size:26
Alignment explanation
Indices: 5144475--5144527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5144465 GTTGACTTAG
*
5144475 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
5144501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5144527 G
1 G
5144528 AGCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5146310 original size:26 final size:26
Alignment explanation
Indices: 5146274--5146326 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5146264 GTTGACTTAG
* * *
5146274 GCATACGGAGTTGATTCGCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5146300 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5146326 G
1 G
5146327 ATTGGATTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5147200 original size:25 final size:25
Alignment explanation
Indices: 5147166--5147213 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
5147156 GTTGACTGAG
5147166 GCATACGGAGATCATTCCCAGTCAA
1 GCATACGGAGATCATTCCCAGTCAA
*
5147191 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGATCATTCCCAGTC
5147214 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGATCATTCCCAGTCAA
Found at i:5148105 original size:26 final size:26
Alignment explanation
Indices: 5148069--5148147 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
5148059 GTTGACTTAG
5148069 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5148095 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5148121 GCATA-TGAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
5148147 G
1 G
5148148 ATCGAACCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5149033 original size:26 final size:26
Alignment explanation
Indices: 5148997--5149047 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5148987 TGACTTAGGC
5148997 ATACGGAGTTCATTCCCAATCTAAGG
1 ATACGGAGTTCATTCCCAATCTAAGG
*
5149023 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
5149048 ATTGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGG
Found at i:5149927 original size:26 final size:26
Alignment explanation
Indices: 5149897--5149949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5149887 GTTGACTTAG
*
5149897 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5149923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5149949 G
1 G
5149950 ATCAGGCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5150835 original size:26 final size:26
Alignment explanation
Indices: 5150799--5150851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5150789 GTTGACTTAG
* *
5150799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCACAGTCTAA
5150825 GCATAAGGAGTTCATTCACAGTCTAA
1 GCATAAGGAGTTCATTCACAGTCTAA
5150851 G
1 G
5150852 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCACAGTCTAA
Found at i:5151729 original size:26 final size:26
Alignment explanation
Indices: 5151700--5151752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5151690 GTTGACTTAG
*
5151700 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5151726 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5151752 G
1 G
5151753 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5153170 original size:25 final size:26
Alignment explanation
Indices: 5153135--5153186 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
5153125 GTTGACTTAG
**
5153135 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5153161 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5153186 G
1 G
5153187 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5155815 original size:26 final size:26
Alignment explanation
Indices: 5155785--5155837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5155775 GTTGACTTAG
5155785 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
5155811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5155837 G
1 G
5155838 ATTGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:5159371 original size:26 final size:26
Alignment explanation
Indices: 5159335--5159384 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5159325 AACTTAGGTA
* *
5159335 TACGGAGTTCATTCCTAGTCTAAGCT
1 TACGGAGTTCATTCCCAATCTAAGCT
5159361 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
5159385 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCT
Found at i:5159789 original size:899 final size:895
Alignment explanation
Indices: 5156809--5161492 Score: 5925
Period size: 899 Copynumber: 5.2 Consensus size: 895
5156799 AGCATGCATT
* * * *
5156809 GGTTCCGTGAT-GGGGCAGCCGGAGGAGTGTGCGCAAATGAATGGTGTGATGGGTTGCTGG-ACT
1 GGTTCCGCGATCGGGG-GGCCGG-GG-GTGTGCGCACATG-AT-GTGCGATGGG-TGCTGGTACT
* ** *
5156872 TGGCCCTGTATAATTGG-GCCCT-GGCC-CATCAAGCCTCGAG-A-TCACA-CCCCTTAAAGAGG
60 TGGCCCT-TAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-G
5156931 CATTTGAGATTTTACCAGG-TTGCTGCCAGTAGCCATTAAAGTGTCCTGAAATGGGGACACTTTT
122 CATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTT
* * *
5156995 TTCAAATGGTC-CAAAATCTTTGGTTACACTTCGAG-TTTTAGGCTGAAATTTTTTATGCAT-CA
185 TTCAAATGGTCACAAAATC-TT-G-TACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCC
* * * *
5157057 ACAAAAAAATATAAGGA-CATGTCTACCAAGTTTGAGGGCCAAAATTCCTTCCGAAAAAATTTTT
246 A-AAAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCTGAAAAAA-TTTT
* * ** **
5157121 AAAAAATCCCGAACCTCTTAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAACTTGCCAT
308 AAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
5157186 GAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATCGGC
373 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** *
5157251 ATGCAGAAATATGAAGATGAACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
438 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
5157316 TGTCTCTATGGCC-G-GTA-T---AG--TGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCGTA
503 CGTCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * **
5157373 CGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGAGT-GACAGCAC
568 TGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGTAGGA-TCGGTAGCAC
* * * *
5157436 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCGGCCCTTCT-TCCTGGCTGAGCGTCCG
631 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCG
* ** * ** * * * *
5157500 TACGCTCATTTTGTGTGTTGACTTAGTAATATGGAGTTCATTCCCAGTCTAGGCATACAGAGTTC
695 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTC
* * * * *
5157565 ATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGCAGCACATTCTGGGCTCAGGCATGTGT
760 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
5157630 TGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
825 TGGTGCTGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACGG
5157695 CATTGG
890 CATTGG
* ** * *
5157701 GGTTCCGACGATCGGGGGGGCCGACGGGGCGTGCTAACATGATGTGCAATGGGTTCTGGTACTTG
1 GGTTCCG-CGATC-GGGGGGCCG--GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
5157766 GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-TTT
62 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
5157830 CGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
127 -GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
5157895 TGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATATTTTTATGCATGCCAAAAAAAATA
191 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * ** *
5157960 CAAGGATCACGTCCACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
256 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAA
*
5158025 CCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
321 CCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
**
5158090 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
386 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
5158155 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTGCGCATCCCGTCTCTCTGGC
451 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTCTGGC
* * * **
5158220 CGGCATAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGGTTGGCTTAGGCATACAGAGTTC
515 CGGCGTAGTGGCCGCCCGCCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
* * * * *
5158285 ATTCCCAGTCTAGGATCAGACCGGATCGAGGGTTGTGGCAATAGGATCAGCAGCACGCAGAGGGG
576 ATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGG
* * * * *
5158350 GACCCGACCGATCCTCGGCTTGCACATCCCGCCCATCTGGCCGGCTGAGCGCCTGCACGCTCATT
640 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* * * *
5158415 TCATGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAGTC
705 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * *
5158480 TAAGATTGGAGTGGACCGAGGATTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG-TCGC
770 TAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GC
* * * *
5158544 ATTTTTCTTCGCCGGGGCAACATCGTCGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGG
834 ATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGA-CGGCATTGG
* * *
5158606 TGTTCCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
1 GGTTCC-GCGATC-GGGGGG-CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
5158671 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAATCACACCCCCTTAAAGAGCATTTG
63 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
5158736 AGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTTCAAATG
128 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
5158800 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACG
193 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
5158865 AGGATCACGTCTACCAAGTTTGGGGCTAAAAATCGTTCTGAAAAAATTTTAAAAAATCTCGAACC
258 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACC
** ** * *
5158930 GTAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTTGTCTTGTCATGAAACTTCACGTGAA
323 ACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
5158995 AGCTTATGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
388 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
5159060 AATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGG
453 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * **
5159125 CGTAGT-GCCTGCCCGCCCGCCCGCCAGGTCGTTTCGTCGGTCGGTTTATTCATATGGAGTTCAT
518 CGTAGTGGCC-GCCCGCCCGCCCG-C---TCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT
* * * * * * *
5159189 TCCTAGTCTAAGATCAGACTGGACGAGTGTTGCGGCAGCAGGATTGGTAGCAGGCAGTGGGGGAC
578 TCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGAC
* * * * *
5159254 CCGATCGATCCCCAGCTTGCGCATCCCG-CCCTTTCGGCCGGGTGAGCGCCCGCCCGCTCATTTT
643 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCATTTC
* * * *
5159318 ATGGGTTAACTTAGGTATACGGAGTTCATTCCTAGTCTAAGCTTACGGAGTTCATTCCCAATCTA
707 ATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
5159383 AGATCAGACCGGACCGAGGGTTGCTGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTGCATT
772 AGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATT
*
5159448 TTTCTTCGCTAGGGCACCATCG-CTGGAGCATCGCCGAAGAACCTGACCGACGGCATTGG
837 TTTCTTCGCTGGGGCACCATCGTC-GGAGCATCGCCGAAGAACCTGACCGACGGCATTGG
* * * *
5159507 GGTTCCAGCGATCGGGGAGCCGGGGGTGTTCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCC
1 GGTTCC-GCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
5159572 CTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATGTGAG
65 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
5159637 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGT-TGAAATGGGGACACTTTTTTCAAATGG
130 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGG
*
5159701 TCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAAAAAAAATACAA
194 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
5159765 GGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAATCTCGAACCA
259 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCA
** * *
5159830 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATC-TGAA
324 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA-CGTGAA
* * * * *
5159894 GGATTAAGGGACCATCGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAAAAATATGAA
388 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * *
5159959 GATGTGCCTAAACACACCTACCACCTTATCGATCCATGACTTGCGCATCCCGTCTCCCTGGCCGA
453 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
5160024 CGTAGTGGCCGCCCGCCCTCCCTCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
518 CGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
* * * * * *
5160089 GTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAACACGTAAAAGGGGACCC-A
583 GTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGA
* * * ** *
5160153 GCCGATCCCCGGCTGGCGCAT-CCGCCCCTCTGGCCGGTTGAGCGCCCGCACATTCATTTCGTGG
647 -TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGG
** *
5160217 GTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGAT
711 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** *
5160282 TGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
776 CGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
* * * * * * *
5160347 TTCG-TCGGGGCACCATCATAGGAGCATTGTC-AGAGAACCTGACCGGCTGCATTAG
841 TTCGCT-GGGGCACCATCGTCGGAGCATCGCCGA-AGAACCTGACCGACGGCATTGG
* * * * *
5160402 GGTTCCAACGATCGAGGGGGCGGGGGGTGTGCACACATGACGTGCGATGGGTGGTGGTACTTGGC
1 GGTTCC-GCGATCG-GGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
5160467 CTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGA
64 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
5160532 GATTTTACAGGTGTGCTGCCAGTTGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGG
129 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
5160597 TCACAAAATCTTGTACACTTC-ACTTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATACA
194 TCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
5160661 AGGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCTCGAACC
258 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACC
* * * *
5160726 ACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAA
323 ACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * *
5160791 GGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGAAAAAATATCAA
388 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * *
5160856 GATATGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCCGG
453 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
5160921 CGTAGTGGCCGCCTGCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATATGGAGTTCATTCCCA
518 CGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
* * * * * * ** *
5160986 GTCTAAGATCAGATCAGACTGAGGGTTGCGACAGTAGGATCGGTAACACGTAGAAGCAGACCCGG
583 GTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGA
* * * *
5161051 TCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGG
647 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGG
* *
5161116 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
712 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * *
5161181 GGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCCAGCATGTGCTAGTG-TCGTATTTTTC
777 GGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTC
* * * *
5161245 TTCGAC-GAGGCACCATCATCGGAGCATCGCC-AGAGAACCTGATCGACGACA----
841 TTCG-CTGGGGCACCATCGTCGGAGCATCGCCGA-AGAACCTGACCGACGGCATTGG
* **
5161296 ---T---CG---GGGGGGCCAGGGGGTGTACGCACATGATGTGC-ATTGGGCACTGGTACTTGGC
1 GGTTCCGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGC
* * * *
5161351 CCTTATATTGGTCGCTTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGA
64 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
5161416 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
129 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
5161481 TCACAAAATCTT
194 TCACAAAATCTT
5161493 AAAAAATCCC
Statistics
Matches: 3351, Mismatches: 372, Indels: 146
0.87 0.10 0.04
Matches are distributed among these distances:
883 7 0.00
884 167 0.05
887 2 0.00
890 5 0.00
891 187 0.06
892 112 0.03
893 41 0.01
894 57 0.02
895 312 0.09
896 258 0.08
897 404 0.12
898 196 0.06
899 409 0.12
900 76 0.02
901 259 0.08
902 94 0.03
903 297 0.09
904 169 0.05
905 294 0.09
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGTTCCGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCACA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
TAAGATCAGACCGGACGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGATCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGC
TGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGG
Found at i:5161155 original size:26 final size:26
Alignment explanation
Indices: 5161125--5161177 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5161115 GTTGACTTAG
*
5161125 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
5161151 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5161177 G
1 G
5161178 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5161936 original size:26 final size:26
Alignment explanation
Indices: 5161907--5161959 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5161897 GTTGACTTAT
*
5161907 GCATACGGAGTTTATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
*
5161933 GCATACGGGGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
5161959 G
1 G
5161960 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:5163718 original size:26 final size:26
Alignment explanation
Indices: 5163689--5163741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5163679 GTTGACTTAG
* *
5163689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
5163715 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
5163741 G
1 G
5163742 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:5164929 original size:901 final size:896
Alignment explanation
Indices: 5161485--5168561 Score: 8911
Period size: 892 Copynumber: 8.0 Consensus size: 896
5161475 AAATGGTCAC
* * * *
5161485 AAAATCTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
5161550 TTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5161615 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
5161680 GCACATCCCATCTCTCTGGCCGACGTAGTGCCGGCCCGCCCGCCTGCTCATTTCGTCAGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * * *
5161745 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATTG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA-TG
* * * * * * * * *
5161810 GCAGCACGCAGAGGGTGACCAGGCCGATCCCCAGTTTACGCATCCCGCCCTTCTGGCCGACTGAG
325 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * * * * * * *
5161875 TGCCCACATGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTTATTCCTAGTCTAAGCATACG
390 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * *
5161940 GGGTTCATTCTCAGTCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGAGC
455 GAGTTCATTCCCAGTCTAAGA-TGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* * ** * * *
5162005 ATGTGGTGGTGCCGCATTATTCTTCGTCGAGGTAACATCGTCGGAGCATCGTCGGAGAACCTGAC
519 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC--CGGAGAACCTGAC
* * * *
5162070 C-AGCGCCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTTTGCGCACATGATGTGCGATGG
582 CGA-CGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
5162134 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
646 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
5162199 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGAC
711 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGAC
* * * *
5162264 ACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTAGTTGAATGTTTTTATGCATG
776 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
5162328 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCCGAA
841 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAA
* * *
5162384 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
5162449 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
5162514 GCATTGGCAAACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
5162579 GCGCATCCCGTCTCTCTAGTAGGCGTAGTGCCCGCCCGTCCACCCGCCCGTTCGTTTCGTCGGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCTGCTCGTTTCGTCGGTT
* * * * * *
5162644 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGATAGCTGG
257 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * * * * *
5162709 ATCGGCAGCACGCAGAGGGGGACCCAACTGATCCCTGGCTTGCCCATCTCACCCCTCTGGCTGGC
322 AT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
5162774 TGAA-CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCGAAGC
386 T-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
* *
5162838 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC-GACAGCACATGCTGGGC
450 ATACGGAGTTCATTCCCAGTCTAAGA-TGGATCGGACCGAGGGTTGCAG-CAGCACATGCTGGGC
* *
5162902 TCGGCCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCA---TC---G---CCGGAGAACC
513 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCCGGAGAACC
** * * * *
5162958 TGACCGTGGACATTGGGGTTACGGACGATC--CGGGG-C-GGGGGGTGTTCGCAGATGATGTGCG
578 TGACCGACGACATTGGGGTT-CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
5163019 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAATCTCGAGAACTCACAC
642 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
5163084 CCCCTTAAAGAGCATTGGACATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAACGG
707 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
* * * * *
5163149 GGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTACCCGAATTTTTTTTTG
772 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** *** *
5163214 CATGCCAAAAAAAATGCAAGAATCACGTCTACCAAGGCTATAGCCAAAACTCCTTCTGAAA
837 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AA
* * *
5163275 AAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGGAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5163340 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAGAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
5163405 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
5163470 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG-CT--T-GTTTCATCGGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * ** *
5163527 TAGGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCAAACCGAGGGTTGCGGTAGTAGGATCG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT-G
* * * * *** * *
5163592 GTAGCATGCAGAGGGGGACCCAACCGATCCCCAGCTTAATCATCTCGCCCCTCTGGCCGGCTGAG
325 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * * * *
5163657 CGCCTGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
390 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * *** *
5163722 AAGTTCATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGTTCCAGCACATGCTGGGCTCGAGC
455 GAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
*** **
5163787 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
519 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT--CCGGAGAACCTGAC
* * * * *
5163852 CGCCGGCATTGGGGTTCCGACGATCGGGGGGCCCAGGGGGGTGTGCGCACATGATGTACGATGGG
582 CGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
5163917 TGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCAT
647 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
5163982 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTAAATGGGGACA
712 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
* * *
5164047 CTTTTTTGAAATGGTCACAAAATCTTGTACA-TTTCAAGTTTTTAGCTGAATTTTTTTGTGGATG
777 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * ** *
5164111 CCAAAAAAAATACAAGGATCACGTCTACCTACTTTGGGGGAAAAACTCCTTCTGAA
841 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * ** * *
5164167 AAAATTTTAAAAAATCCAAAACCGTAGAAAGTTTCAAAAATCGTGAAAAATACAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
5164232 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
5164297 GCACTGGCATGTAGAAATATGAAGATGTACCTAAACTCGCCTACCACCCTATCGATCCATGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
5164362 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGATTGGCT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * * * *
5164427 AAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATGG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATGG
* * * *
5164492 ACAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCCCGTCCCGCCCCTCTGGCCGGCTAAG
326 -CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
*
5164557 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCAAGTTCATTCCCAGTCTAAGCATACG
390 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * ** * * *
5164622 GAGTTCATTGCCAGTCTAAGATTCGGATCAGACCGAGGGTTAAAGTAGCACATGTTGGGCTTGGG
455 GAGTTCATTCCCAGTCTAAGA-T-GGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
* * *** * * *
5164687 CATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTCGGTGAACCTGA
518 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC--CGGAGAACCTGA
* * * *
5164752 CC-AGCGATATTGGGGTT-TGGCGATCGGGGGGGCCCGGGGCGGTGTGCGCACATGATGTGCGAT
581 CCGA-CGACATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
5164815 GGGTGCTGGTAATTGGCCGTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCC
644 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5164880 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
709 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
* * *
5164945 ACACTTTTTTCAAATGGACACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCA
774 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
** * *
5165010 TGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGCGACCAAAACTCCTTCCGAA
839 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
5165068 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
5165133 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * * * *
5165198 GCATTGGCACATAGAAATATGAAGATGTGACTAAACACACTTACCACCCTATTGATCCACGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
5165263 GCGCACCCCGTATCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCCCCCTCGTTTCGTCGGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTG----CTCGTTTCGTCGGTT
* * * * * * *
5165328 GGCTTAGGCATACGGAGTTTATTCCCATTGTAAGATCAGACCGGACCAAGGGTTGTGATAGCAAG
257 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* ** * * * * * *
5165393 ATCGACAGCACATAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCACTCTGGCTGGT
322 AT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
5165458 TGAA-CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
386 T-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
* * *
5165522 ATATGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCAAATGCTGGGCT
450 ATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
*
5165586 CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTC---G-A-----AGAACCT
514 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCCGGAGAACCT
* * * * * *
5165642 GACCGACGGTC-TTGGGGTTCCCG-TGATCGGGGGGGCCGGGGGGGAGTGCGAACATGATATACG
579 GACCGAC-GACATTGGGGTT-CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * *
5165705 ATGAGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
642 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
5165770 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
707 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
* *
5165835 GGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
772 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
5165900 CATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
837 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
5165960 AAAATTTTAAAAATTCCCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5166025 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5166090 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
5166155 GCACATCTCGTCTCTCTAGTCGGCATAGTGCCCGCCCGTCCGCCCGCCTACTCGTTTCGTCGGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCTGCTCGTTTCGTCGGTT
* * * * * * *
5166220 GGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATGAGATCGGACCAAGGGTTACGGCAGCAAG
257 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * * *
5166285 ATCGGCAACATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGC
322 AT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
5166350 TGAA-CGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACCG-AGTTCATTCCCAGTCTAAG
386 T-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAAGTTCATTCCCAGTCTAAG
*
5166413 -AT-C-GA----A----C---C--------A---GACCAAGGGTTGC-GACAGCACATGCTGGGC
449 CATACGGAGTTCATTCCCAGTCTAAGATGGATCGGACCGAGGGTTGCAG-CAGCACATGCTGGGC
* * * * * * ** *
5166452 TCGGGCAAGCGATGGTGCCTCATTTTTCTTCACCTGGGCACCATCTTCAAAGCACCATCGGAGAA
513 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC--CGGAGAA
** ** * * *
5166517 CCTGATTGACGGTATTGGGGTTTCGACGATCGGGCGAGCCTGGGGGGGTGTGCGCACATGATGTG
576 CCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTG
* * *
5166582 CGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCAC
640 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5166647 AGCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
705 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
* *
5166712 GGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
770 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5166777 TGCGTGCCAACAAAAATAAAAGGATCACATCTACCAAGTCTAGGGCCAAAACTCCTTCCGAA
835 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
5166839 AAAATTTTAAAAATTCCCGAATCGCAAAATGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCAT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5166904 CTTGCGATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5166969 GCATTGACACGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
5167034 GTGCATCCCGTCTCTCTGGCCGGCGCAGTACCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * * *
5167099 TGGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGATCG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT-G
* * * * * *
5167164 ACAACACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
325 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* *
5167229 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C-AATC-TA--
390 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * *
5167286 -AG---A-T-CC-G----A-CT-G-T---ACCGAGGCTTGCGGCAACACATGTTGGGCTCGGGCA
455 GAGTTCATTCCCAGTCTAAGATGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* *
5167334 TGTGCTGGTGCCGAATTTTTCTTCATCGGGGCACCA---TC---G--T-CGGAGAACCTGACCGA
520 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGA
* * *
5167390 CGGCATTGGGGTTCCGACGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
585 CGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
5167454 TGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCCAACCTCGAGAACTCACACCCCCTTAA
650 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
5167519 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCTAGTAAAGTGTCTGAAATGGGGACATT
715 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTTAAATGGGGACACT
* *
5167583 TTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCA
779 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * * * *
5167648 ACAAAAATATGAGAATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
844 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5167701 AAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATACAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
5167766 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5167831 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTT
131 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5167896 GCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCTCG--C-CC-GCTCGTTTCGTCGGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* ** ** * *
5167957 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTAACGGTTACGGTAGCAGGATCG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT-G
* * * ** * * *
5168022 ACAGCACGCAAAGGGGGACCTGGTCGATCCCCGGCTTCCGCATCCCGCCCCTGTGGCCGGCTGAG
325 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * * *
5168087 CGCCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
390 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * *
5168152 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGTAGCACATTCTGGGCTCGAGC
455 GAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* * *
5168217 ATGTGCTGGTGCCACATTTTTCTTCACCAGGGCATCATCGTCGGAGCATCACCGGAGAACCTGAC
519 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT--CCGGAGAACCTGAC
* * * * *
5168282 CGACGACATTGGGGTTCTGACGATAGGGGGGGCCGGGGGGGTGAGCGCACATGATATACGATGGG
582 CGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
5168347 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCT
647 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
5168412 TAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTAGTAAAGTGTCTAAAATGTGGACA
712 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
*
5168477 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTTGTGCATGC
777 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
5168542 CAACAAGAATACAAGGATCA
842 CAACAAAAATACAAGGATCA
5168562 TTGTATGAAT
Statistics
Matches: 5389, Mismatches: 659, Indels: 263
0.85 0.10 0.04
Matches are distributed among these distances:
858 174 0.03
859 4 0.00
860 1 0.00
861 2 0.00
862 467 0.09
863 9 0.00
864 35 0.01
866 1 0.00
867 69 0.01
869 2 0.00
870 7 0.00
871 3 0.00
872 5 0.00
873 1 0.00
874 5 0.00
875 239 0.04
876 1 0.00
877 5 0.00
878 34 0.01
879 744 0.14
880 2 0.00
881 1 0.00
882 3 0.00
883 4 0.00
884 59 0.01
885 1 0.00
886 1 0.00
887 7 0.00
889 194 0.04
890 91 0.02
891 220 0.04
892 895 0.17
893 265 0.05
894 3 0.00
895 35 0.01
896 250 0.05
897 4 0.00
899 215 0.04
900 215 0.04
901 568 0.11
902 5 0.00
903 339 0.06
904 17 0.00
905 184 0.03
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGACCGAC
GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
Found at i:5165524 original size:26 final size:25
Alignment explanation
Indices: 5165494--5165545 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
5165484 GTTGACTTAG
5165494 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAG-TCATTCCCAGTCTAA
* *
5165520 GCATATGGAGTCATTCCCAGTCTAA
1 GCATACGAAGTCATTCCCAGTCTAA
5165545 G
1 G
5165546 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTCATTCCCAGTCTAA
Found at i:5168156 original size:26 final size:26
Alignment explanation
Indices: 5168119--5168171 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5168109 GTTGACTTAG
5168119 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5168145 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
5168171 G
1 G
5168172 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5168939 original size:26 final size:27
Alignment explanation
Indices: 5168886--5168939 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
5168876 GTTGACTTAG
5168886 GCATACAGAGTTCATTCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCCAGTCTAA
* *
5168913 GCATACGGAGTTC-TTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCCAGTCTAA
5168939 G
1 G
5168940 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCCAGTCTAA
Found at i:5169269 original size:770 final size:760
Alignment explanation
Indices: 5167801--5169332 Score: 2201
Period size: 770 Copynumber: 2.0 Consensus size: 760
5167791 CTTAAGGGAC
* *
5167801 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAA
* * * *
5167866 CCCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCGTAGTGCCCCC
* * *
5167931 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
131 TCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGATCGGACCA
** * * * * * * * *
5167996 AACTAACGGTTACGGTAGCAGGATCGACAGCACGCAAAGGGGGACCTGGTCGATCCCCGGCTTCC
196 AACTAACGGTTACGACAACAGGATCAACAGCACACAAAGGGGGACCCGATCAATCCCCAGCTTAC
* * * * **
5168061 GCATCCCGCCCCTGTGGCCGGCTGAGCGCCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACG
261 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
*
5168126 AAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
326 AAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGT
* * * * * *
5168191 TGTAGTAGCACATTCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCATCATC
391 TGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTCCATCACCAGGGCACCATC
** * *
5168256 GTCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCTGACGATAGGGGGGGCCGGGGG
456 ACCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATAGGGGGGCCCGGGGG
* *
5168321 GGTGAGCGCACATGATATACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCA
521 GGTGAGCACACATGATATACAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCA
*
5168386 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAG
586 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5168451 CTAGTAAAGTGTCTAAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGT
651 CCAGTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* *
5168516 TTTTAGCT-GAATTTTTTTGTGCATGCCAACAAGAATACAAGGAT
716 TTTTAGCTAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
5168560 CATTGTATGAATTTACAAGGCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTTCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAA
*
5168625 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCCC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCGTAGTG-CCCC
5168690 CTTCCGGCCCGCCCTCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGA
130 C-T-C-GCCCG----CTCGTTTCGTCGATTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGA
* * * * ** *
5168755 TCGGA-CAGGATTGAGGGTTGTGACAACAGGATCAACAGCACACAGAGGGGGACCCGATCAATCC
188 TCGGACCA-AACTAACGGTTACGACAACAGGATCAACAGCACACAAAGGGGGACCCGATCAATCC
*
5168819 TCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
252 CCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* *
5168884 AGGCATAC-AGAGTTCATTCCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGAA-C
317 AGGCATACGA-AGTTCATT-CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATC
* * *
5168947 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCCATCG
380 -GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT-CCATCA
* * * * * * *
5169012 TCGGGGCACCATCACCGGAGCATCACCGGAGAACGTGACCGGCGGCATTGGGGTTCCGATGATCC
443 CCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGAT-A
* * * *
5169077 GGGGGGCCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG
507 GGGGGGCCCGGGGGGGTGAGCACACATGATATACAATGGGTGCTAGTACTTGGCCCTTATATTGG
* * * *
5169142 CCTCCTATCCCTCATCGAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTT-CTAG
572 CCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AG
*
5169206 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
636 GTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
5169271 TTGTACACTTCGAGTTTTTAGCTAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
701 TTGTACACTTCAAGTTTTTAGCTAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
5169331 CA
1 CA
5169333 CGTCTACCAA
Statistics
Matches: 680, Mismatches: 77, Indels: 20
0.88 0.10 0.03
Matches are distributed among these distances:
759 117 0.17
760 4 0.01
761 1 0.00
762 1 0.00
763 5 0.01
766 3 0.00
767 166 0.24
768 92 0.14
769 57 0.08
770 198 0.29
771 36 0.05
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (760 bp):
CATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCGTAGTGCCCCC
TCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGATCGGACCA
AACTAACGGTTACGACAACAGGATCAACAGCACACAAAGGGGGACCCGATCAATCCCCAGCTTAC
GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
AAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGT
TGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTCCATCACCAGGGCACCATC
ACCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATAGGGGGGCCCGGGGG
GGTGAGCACACATGATATACAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCAGTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
TTTTAGCTAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
Found at i:5170714 original size:26 final size:26
Alignment explanation
Indices: 5170684--5170736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5170674 GTTGACTTAG
* *
5170684 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5170710 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5170736 G
1 G
5170737 AGTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5170833 original size:894 final size:893
Alignment explanation
Indices: 5168560--5171681 Score: 4216
Period size: 893 Copynumber: 3.5 Consensus size: 893
5168550 ATACAAGGAT
* * * * *
5168560 CATTGTATGAATTTACAAGGCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTTCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
*
5168625 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCCC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CCC
* * *
5168690 CTTCCGGCCCGCCCTCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGA
129 C-GCCGGCCCG----CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** *
5168755 TCGGA-CAGGATTGAGGGTTG-TGACAACAGGATCAACAGCACACAGAGGGGGACCCGATCAATC
189 TCAGACCA-GATTGAGGGTTGCTG-TAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCAATC
* * * * *
5168818 CTCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
252 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
5168883 TAGGCATACAGAGTTCATTCCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGAACT
317 TAGGCATACAGAGTTCATT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
5168948 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCCATCGT
381 AGACCGAGGGTTGCGACAGAACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTT-TCTTCGT
* ** * * *
5169013 CGGGGCACCATCACCGGAGCATCACCGGAGAACGTGACCGGCGGCATTGGGGTTCCGATGATCCG
444 CGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CG
* *
5169078 GGGGGCCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
508 GGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
5169143 CTCCTATCCCTCATCGAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTT-CTAGG
571 CCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGG
**
5169207 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
635 TTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
5169272 TGTACACTTCGAGTTTTTAGCTAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
700 TGTACACTTCGAG-TTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
5169337 TACCAAGTTTGGGGCCAAAACACCTTCGAAAAAAATTTAAAAAAATTTCGAACCGTAAAAAG-TT
763 TACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTT
* *
5169401 TCAAAGAT--AGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
828 TGAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
5169464 AC
892 AC
* **
5169466 CATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
* ** *
5169531 ACCACCT-CTGCCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C
* * *
5169595 ACGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGACCAAGA
129 -CG-CCG---GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * *
5169660 TCGGACCGGACTGAGGGCTGCTGTAGTAGGATCGGTAGCATGTAGA-GGGGACTCGACCGATCCC
189 TCAGACCAGATTGAGGGTTGCTGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCAATCCC
* * * *
5169724 TGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTA
254 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
5169789 AGCATACAAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGGCCAGA
319 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
5169854 CCAAGGGTTGC-AGCA-ACACATGCTGGGCTCGAGCATGTGCTGGTGGCTCATTTTTCTTCGTCG
384 CCGAGGGTTGCGA-CAGA-ACATGCTGGGCTCG-GCATGTGCTGGTGCCACATTTTTCTTCGTCG
* *
5169917 GGGCACCATCGCCAGAGCATCGTCGAAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGG
446 GGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
5169982 GGGCTGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
511 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
5170047 ATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
576 ATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
5170112 GTCAGTAGCCAATTAAAGTGTCCGACATGGGGACACTTTTTTCAAATAGTCAAAAAATCTTGTAC
641 GCCAGTAGCC-ATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
5170177 ACTTCGAGTTCTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAT
705 ACTTCGAGTT-TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
5170242 GTTTGGGGACAGAACTCCTTTC-AAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAA
769 GTTTGGGGCCAAAACTCC-TTCGAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAA
* *
5170306 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGAC
833 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
5170367 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGTAGATGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
* * * *
5170432 CCCACCTACCACCCTATCGATACACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTG-CCCG
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCG
* * * * *
5170496 TCGACCCGCTCGTTTCGTCGGTTGGCTTAGGCACATGGAGTTCATTCCCAGTCTAA-ATCAGACC
131 CCGGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
5170560 AGATTGAGGGTTGCCGTAGTAGGATCAGCAGCACGTAGAGGGGGACCCGATCAATCCCCGGTTTG
196 AGATTGAGGGTTGCTGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCAATCCCCGGCTTG
* * ** * * *
5170625 TGCATCCCGCCCCTCTGGTCGGTTGAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAC
261 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
5170690 GGAGTTCATTCCCAGTGTAAGCATACAGAGTTCATTCCCAGTCTAAGAGT-GGACCAGACCGAGG
326 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGG
*
5170754 GTTGCGACAGAACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
390 GTTGCGACAGAACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * *
5170819 TCGCCGGAGCATCGTCGAAGAACTTGATCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG
454 TCGCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGG
*
5170884 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGTCCCCTATCCCTC
518 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
5170948 AACAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
583 ATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
5171013 GCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAG
648 GCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
**
5171078 CTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAACTTGGGG
713 -TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
5171143 CCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCCCAAACCGCAAAAACTTTTGAAAATCGTGAA
777 CCAAAACTCCTTC-GAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAA
5171207 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
841 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
5171260 CATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAGACAAAAATATGGAGATGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
* *
5171325 CACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C
* * * * * *
5171390 CCGCCTGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAT
128 CCGCCGGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** * *
5171455 ACCGGATTGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACACC-ACCGACCCCCGG
193 ACCAGATTGAGGGTTGCTGTAGCAGGATCAGCAGCACGTAGAGGGGGAC-CCGACCAATCCCCGG
* *
5171519 CTTGCGCAT-CCGCCCCTCTGGCCGACTGAGC-CCCTGCACGCTCGTTTCGTGGGTTGACTCAGG
257 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC-GCACGCTCGTTTCATGGGTTGACTTAGG
* * * * *
5171582 CATACGGAGTTAATTCCCAGTCTAAGCATATGGAGTTCTTTCCCCA-TCTAAGATCGGA-TAGGA
321 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCA-GA
* * * * *
5171645 TCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATG
384 CCGAGGGTTGCGACAGAACATGCTGGGCTC-GGCATG
5171682 CCAAAAAAAA
Statistics
Matches: 1957, Mismatches: 221, Indels: 85
0.86 0.10 0.04
Matches are distributed among these distances:
892 3 0.00
893 375 0.19
894 373 0.19
895 49 0.03
896 5 0.00
897 175 0.09
898 70 0.04
899 224 0.11
900 75 0.04
901 127 0.06
902 105 0.05
903 87 0.04
904 89 0.05
905 123 0.06
906 72 0.04
909 5 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (893 bp):
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCG
CCGGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGATTGAGGGTTGCTGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCAATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
TTGCGACAGAACATGCTGGGCTCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
GCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
GAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCGAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
Found at i:5171624 original size:26 final size:26
Alignment explanation
Indices: 5171581--5171633 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
5171571 GTTGACTCAG
5171581 GCATACGGAGTTAATT-CCCAGTCTAA
1 GCATACGGAGTTAATTCCCCA-TCTAA
* **
5171607 GCATATGGAGTTCTTTCCCCATCTAA
1 GCATACGGAGTTAATTCCCCATCTAA
5171633 G
1 G
5171634 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCCATCTAA
Found at i:5172288 original size:158 final size:158
Alignment explanation
Indices: 5171994--5172347 Score: 451
Period size: 158 Copynumber: 2.2 Consensus size: 158
5171984 TCGTTTTGTC
* * *
5171994 GGTTGGCTTAGGCATACGGAGTTCATACCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGT
1 GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGCTGTAGCAGT
* ** * * * * *
5172059 AGGATCGGCAGCACGTAGAGGGGTACAAGGTCGATCCCTAGCTTGTGCATCCCGCTCCTCTGGCC
66 AGGATCAGCAGCACACAGAGGGGGACAAGGTCAATCCCTAGCTTGCGCATCCCGCCCCTCTGGCA
* * **
5172124 GACTGAGCGCCCATACGCTCTTTTCGTG
131 GACTGAGCGCCCACACGCTCGTTTAATG
* *
5172152 GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGA-CTGAGGGCTGTGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATC-GAGGGCTGTAGCAG
* * * *
5172216 TAGGATCAGTAGCACACAGAGGGGGACCTA-GTCAATCCCTGGCTTGCGCATCTCGCCCCTCTGG
65 TAGGATCAGCAGCACACAGAGGGGGA-CAAGGTCAATCCCTAGCTTGCGCATCCCGCCCCTCTGG
* *
5172280 CAGGCTGAGCGCCCGCACGCTCGTTTAATG
129 CAGACTGAGCGCCCACACGCTCGTTTAATG
*
5172310 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
5172348 CATACGGAGT
Statistics
Matches: 169, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
157 1 0.01
158 156 0.92
159 12 0.07
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGCTGTAGCAGT
AGGATCAGCAGCACACAGAGGGGGACAAGGTCAATCCCTAGCTTGCGCATCCCGCCCCTCTGGCA
GACTGAGCGCCCACACGCTCGTTTAATG
Found at i:5172357 original size:26 final size:26
Alignment explanation
Indices: 5172321--5172373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5172311 GTTGACTTAG
5172321 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5172347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5172373 G
1 G
5172374 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5173250 original size:26 final size:26
Alignment explanation
Indices: 5173220--5173272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5173210 GTTGTCTTAG
*
5173220 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5173246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5173272 G
1 G
5173273 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5174491 original size:901 final size:901
Alignment explanation
Indices: 5172139--5185588 Score: 12778
Period size: 903 Copynumber: 15.0 Consensus size: 901
5172129 AGCGCCCATA
* * * *
5172139 CGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* ** * * * ** * * * *
5172203 AGGGCTGTGGTAGTAGGATCAGTAGCACACAGAGGGGGA-CCTAGTCAATCCCTGGCTTGCGCAT
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCAT
* * * * *
5172267 CTCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * *
5172332 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
* ** * *
5172397 ACAGCACATGCTGGGCTCCAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCT
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTCG
** * * * **
5172462 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGGGCTCGGGGGTGT
323 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGT
* ** * ** *
5172527 GTGCACATGATGTGCGATAATGTGCTGGTACTTGGCCCTGATATTGGCCAACTATCCCTTATCAA
388 GCGCACATGATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
5172592 ACCTCGAGAACTGACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
5172657 TAAAGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTT
517 TAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* ** * *
5172721 TAGCTAAATTTGGTTGTGCATGCCCACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
581 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
5172786 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCTTGAAAAATA
646 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
5172851 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACA
711 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
**
5172916 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
776 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
5172981 CGATCCAAGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG-CC-T-
841 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * **
5173039 -GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * * *
5173103 AGGGTTACGGTAGCAGGATCGACAGTACGTAGAGGGGGACCCGA-CGATCCCTGACTTGCGCAGC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
5173167 CC-ACCCTTTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGGTTGTCTTAGGCATATGGAGT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCAT-GGGTTGACTTAGGCATACGGAGT
* * *
5173231 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGGCCCAGGGTTGTG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
** *
5173296 GCAGCACATGCTGGGCTCGCTCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTCG
* * * * * * *
5173361 GAGCATCGCCGGAGAACCTGATCGACGGCATTAGGGTTCTGATGATCGGGGGGGCCGGGGGGTGT
323 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGT
* *
5173426 GCGCACATGATGTACGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
388 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
5173491 CCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5173556 AAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
5173621 GCTAAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACATCCACCAAGTTTAGGGCCAAAA
583 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
5173686 CTCCTTCCAAAAAAATTTGAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGA
648 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
5173751 AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
713 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
5173816 CCAT-AAAATGGGATTGGCATGTATAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATTG
778 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
5173880 ATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGTC
843 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * *
5173939 CGCTCATTTCGTCGGTTGGCTTAGGCATATGGGGTTCATTCCCAGTCTATGATCGGACCAGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * *
5174004 AGGGTTGCAGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
*
5174069 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * *
5174134 CATTCCCAATCTAACCGTACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCCG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
* * * *
5174199 CAGCACATGCTGGGCCCGGGAATGTGGTGGTGCCACTTTTTTCTTCGTCGGCACCATCGTCGGAG
261 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCGGAG
* *
5174264 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCTACGATTGGGGGGGTCGGGGGGGTGTGC
326 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGC
*
5174329 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
390 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
5174394 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
455 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
5174459 AGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
520 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * *
5174524 TAAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACATCCACCAAGTTTAGGGCCAAAACT
585 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
5174589 CCTTCCAAAAAAATTTGAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
650 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
5174654 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
715 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
5174719 AT-AAAATGGGATTGGCATGTATAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATTGAT
780 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
5174783 CCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGTC
845 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * *
5174840 CGCTCATTTCGTCGGTTGGCTTAGGCATATGGGGTTCATTCCCAGTCTATGATCGGACCAGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * *
5174905 AGGGTTGCAGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
*
5174970 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * *
5175035 CATTCCCAATCTAACCGTACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCCG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
* * * *
5175100 CAGCACATGCTGGGCCCGGGAATGTGGTGGTGCCACTTTTTTCTTCGTCGGCACCATCGTCGGAG
261 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCGGAG
* *
5175165 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCTACGATTGGGGGGGTCGGGGGGGTGTGC
326 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGC
* *
5175230 GCACATGATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCCTATCCCTCATCAAAC
390 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAAC
** *
5175295 CTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
454 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* ** *
5175360 AAGTGTTTGAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
519 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * **
5175425 CTGACTTTTTTTATGCATGCCAACAAAAATACAGGGATCACGTGTACCAAGTTTGGGGAAAAAAC
584 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * ** * **
5175490 TCTTTTCAAAAAAATTTAAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
649 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * * *
5175555 AACGACTCATCTCGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGC
714 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
5175620 CATAAAAATGGCATTTGCATGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGA
779 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
5175685 TCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAATGCCCACCCGTCCACCC-TCC
844 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGT-C
* * * *
5175743 CGCTCGTTTCGTCAGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCA-ACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* *
5175807 AGGG-T----T-----G--CGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * * * *
5175860 CCACCCTTCTGGCCGATTGAACGGCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
5175925 CATTCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAAGGTTGCG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCG
* * ** *
5175989 GTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGACATCATCGTCG
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG-G-CACCATCGTCG
*
5176054 GAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGAGGGCAG
323 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGG-CG-GGG--G
5176118 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
383 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
5176183 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAG
448 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
5176248 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTATAGTTCGAG-
513 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5176312 TTTTAGTTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGC
578 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
5176377 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAATCGCAAAAAGTTTCAAAAATCCTGAAAA
643 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
5176442 AAATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
708 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
5176507 ACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAATCCACCTACCACTC
773 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
5176572 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGACCGACGTAGTGCCCACCTGCCAGCCCGCC
838 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * *
5176636 CGCTCGTTTCGTCGGCTGTCTTAGGCATACGGAGTTCATT-CCAATCTAAGATCGGACCAGA-TC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-
* * * * * * ** ** *
5176699 GAGGGTTGCGGCAACAGGATCAGCAGCACATAGAGGGGTACAAGGTCGATCCCCGGCTTGTGCAT
65 GAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * *
5176764 CCCACCCCGCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * *
5176829 TCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCCA-CCTAAGATC-AGACCGGATCGAGGGTTG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCGA-ACCGGACCGAGGGTTG
* * * *
5176892 CGGTAGCAGATGCTGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGTCGG-------G--G
258 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCG
* * * * * * ** * * * *
5176948 CACCATCGTCGGAGAACTTGATCTGTGGCATTGACGTTTCGACGATCAGGGGGGCCGGGGGGTTT
323 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGT
** * *
5177013 ATGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
388 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
5177078 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
5177143 AAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
5177208 GCTAAATTTATTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
583 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
5177273 CTCCTTCCGAAAAAATTTTAAAAAAT-CCGCAGCCATAAAAAGTTTCAAAAATCCTGAAAAACAG
648 CTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
5177337 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTAGGAACTTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
5177402 GCCATAACAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATC
777 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5177467 GATCCAAGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGT----GCCCGCCCGCCCAT-
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
** ** **
5177522 ---TTTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * ** * * *
5177584 AGGGTTAC-GATAGCAGGATCGGCAGCAAGCGGAGGGGGACCCAACTGATCCTCGGCTTGCGCAT
66 AGGGTTGCAG-TAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * *
5177648 CCTGCCCCTCTGGCCGACTGAGTG---GC-CGCACG-TTCA----TT---TT--G--T--GG-GG
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * ** *
5177694 TGA----CA---TAGGCATACGTAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGTG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
* * ** **
5177752 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGTGCCATCG-CT
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTC-
* * * * *
5177816 AGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCGAGGGGGTG
322 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTG
* *
5177881 TGCGCACATGATGTGCTATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
387 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
**
5177946 ACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
5178011 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
5178076 AGTTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGCCAAA
582 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * ** *
5178141 ACTCCTTCCGAAAAAACTTTAAACAATCCCGAACCGTAAAAATTTTTGAAAATCTTGAAAAATAG
647 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
** * * * *
5178206 AAAGTGAGTCATCTTGCCATGAAACTTCACTTGACGGCTTAAGGGACCATTGTATGAAATTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *** * *
5178271 GCCATAAAAATGGCATTGGTACACAGAAATATGAAGATGTGCCTCAATCCACCTACCACCCTATC
777 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
5178336 GATCCACGGCTTGCGCATCCCGTCGCTCTGGCTGGCGTAGTGCCTGCCCGCCCGCCCG-C
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * *
5178395 TCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACC
1 -CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * * * * *
5178460 AAGGGTTGCAGCAGCAGGATCAGCAGCACGTAGTGGGGGACCCGACCGATCCCCGACTTGTGCAT
65 GAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * *
5178525 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
*
5178590 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC-ATACCGGACCGAGGGTTGC
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGC
* * * * ** **
5178654 GACAGGACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACC
259 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTC
** * * * *
5178719 GGAGCATCACCGGAGTACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCAGGGGGGTG
322 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTG
*
5178784 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAA
387 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
5178849 ACCTCAAGAAATCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGGAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * **
5178914 TAAAGTGTCTGAAATGGGGACACTTTATTCAAATGTTCACAAAATCTTGTACACCTTTTTA-TTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-C-TTCGAGTTT
* * * * *
5178978 TTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCACGTTTGGGGCCA
580 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
5179043 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAAT
645 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
*
5179107 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
710 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
5179172 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTTAATCCACTTACCACCCTA
775 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** * * ** * *
5179237 TCGATCCTTGGCTTGCGCATCCCGTCGCTTTGGCCAACGTAGTGCCTGCCCGCCCGCCC-AC
840 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * *
5179298 CTGCTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCGAGTCTAAGATCAGACCGGA-T
1 C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * * ** * * ** *
5179362 CGAGGGTTGCAGCAGCAAGATTGGCAGCACACAGAGAGGGACCTGACCGATCCCCGATTTGTGCA
65 -GAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * *
5179427 TCCCGCCCTTTTGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
129 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* ** *
5179492 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGAATGAGGGTTA
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTG
* * * * * ** *
5179556 CGGCAGCACATGCTGGCCTTGGGCACGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACC-TC-A
258 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGT
** * * * *
5179619 CTGGAGCATCACCGGAGAACCTAACTGGCGGCATTGGGGTTCCGATGATC--GGGGGCCGGGGGG
321 C-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGG
* *
5179682 TGTGCCCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
385 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
5179747 AAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
450 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
**
5179812 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAACTT
515 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
5179877 TTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCA
580 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** * * * *
5179941 AAACTCCTTTCGAAAATGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTGAAGGACCA-TTG
645 AAACTCCTTCCGAAAA--AAT--T-TT---A--AAAAATC-C-CGAA-CCGT-AA--A-AAGTT-
* * * * *** * * * * * * * * *
5180005 T-ATGAATTTACGAGCCATA-AAAATG-G-CAT-TGGCACGTAGAAA-TATGAAGATG-TGCCTA
692 TCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGC-CAT-GAAACT-TCACG-TGAAGGCTT
*** ** *** * * * ** ** ** * ******** **
5180063 AACCCACC-TTCCA-CCCTAT-CGATCCA-CGACTTGCGCA-TCCCATCTCTCTGGCCGGCG-TA
752 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-GCATTGGCATGTAGAAATATGAAGAT-
** * * *** *
5180122 GTGCC--CGCCCGCCCGT-CCGCCCGCTCATTTCG-TCGGTTGGGTTAGGCATGGGGAGTTCATT
815 GTGCCTAAACCC-ACC-TACC-ACC-CT-A--TCGATC-CACGGCTT--GC-------G--CA-T
* * * * ** ** * *
5180183 ACCAGTCTAAGAT-TGGATCGGACCG-AGGGTTGCGGCAGCATGATCGACAG-C
860 -CCCGTCT---CTCTGG-CCGG--CGTA--G-TGC--CCGCCCGCCCGCCCGTC
* *** * * * ** ** * *
5180234 ACGCATAGGGGGACCCGACCGATCACGGCTT-GCGCAT-C-CCGCCCATCTGGCC-GGCTAAGCG
1 -CGC-T----CGTTTCG-TCGGT--TGGCTTAG-GCATACGGAGTTCAT-T-CCCAGTCTAA--G
* * ** * * * * ****** **
5180295 CTC-GCACGCTTGTTTCGTGGGTTG-ACTTAG--GCATACGG-AGTTCATTCCTAGTCTAAAATT
52 ATCAG-AC-C-AGACT-GAGGGTTGCA-GTAGCAGGAT-CGGCAG--CA--CGTAGAGGGGGACC
* ** ** * * * * * * ** **
5180355 GGATTGGA-CCGAGGGTTGCG-A--CAGCACATGCTGGGCTTGGGCATGTATTG-GTGC-CACAT
107 CGA-CCGATCCCCGGCTTGCGCATCCCGCCCCT-CT-GGC--CGAC-TG-A--GCGCCCGCACGC
** * * * * * * * * *
5180414 TTTTCTTCATCGGG--CAC-CA-TCGT-CGGAG--CA-T--C-GTCGGAGAACCTGACCGGCG-G
163 TCGT-TTCAT-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TA-AGCAT-A-CGGAGTT
** * * * * * * * * * * * *
5180467 CATT-GGAGTTCCGACGATTGGA-GGGGCCGGGGGGTG-TGC-GCACATGATGTGCGATGGGTGC
222 CATTCCCAG-T-CTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTG-G-GCTCGG-GC
* * * * * * * * * * * * *
5180528 -TGGTACTTG-GCC-C--TTATATT-G--GCCCCCTATCCCTC--ATCAAACCT-TGAAAACTTA
282 AT-GTGCTGGTGCCACATTTTTCTTCGTCGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAACCT-
* ** * ** ** * ***** *** ****** * * *
5180582 CACCCCCTG-AAAGAGCATT-TGA-GATTTTATAGGTTTGCTACCAGTAGC-CA-TTAAAGTGTC
342 GACCGGCGGCATTG-GGGTTCCGACGA-TCGGGGGGGCGGGGGGGTGT-GCGCACATGATGTG-C
** ** * * *** * * ** * ** * * *
5180642 TGAAATAGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGCTGAA-
403 -G--AT-GGG-TGC-TGGTAC--TTGG-C-CCTTATATTG-GC-CCCCTA-TCCCTCATC-AAAC
* ***** * ** ** * ** * * * * * ** *
5180705 TTTTTTTA-TGCACGCCAACAAAAATA-CA-AGGACATGTCTACCAAGTTGGC-ACCAAAACTCC
454 CTCGAGAACT-CACACCCCCTTAAAGAGCATTTGAGAT-TTTA-CAGGTTTGCTGCCAGTA-GCC
* * * * *** *** * * * * **
5180766 TTCTGAAAAAAT-TTTAAAAAATCCAGA-AC---TGAAAAAAGTTTCA-AAAATCATG-AAAAAT
515 AT-T---AAAGTGTCT--GAAATGGGGACACTTTTTTCAAATG-GTCACAAAATCTTGTACACTT
** * * ** * * * ** ** * * *
5180824 --AG---AAAAC-GAGTCGTCTTG-CCATGAAACTTC-ACGTGAAGGTTTAAGAGACCA-TTGTA
573 CGAGTTTTTAGCTGAATTTTTTTGTGCATG---C--CAAC--AAAAATACAAG-GATCACGTCTA
** *** * * * * * * * * ** ** *
5180880 TGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
630 CCAAGTTT-GGGGCC--AAAACT--CCTT--C-CGAAAAAATTTTAAAAAAT-CCCGAA--C-CG
** ** * * * * ** * ** * * * * *
5180944 TACCACCTTATC---GATCCACG---ACTTGCGCATCCTGTC-TCTTTGGCCGTCG-TAGTGCCC
683 TAAAAAGTT-TCAAAAAT-CATGAAAAATAG-AAAACGAGTCGTC-TT-GCCAT-GAAACTTCAC
* ** ** * * * * ** ** * *
5181001 GCCCGCTCGTTTTATTGGTTGGCTTAGGCATACGGACTTCATTCCCAGGCTA-AGATCAAATCGA
742 G--TG-AAGGCTTA--AG--GG---A-CCAT-TGTA-TGAATTTACAAGCCATA-A--AAAT-G-
* * * ** * * ** * * ****** ** *
5181065 ACCGAGGGTT-ACA-GTAGCAGGATCAACA-GCACGTAGA-GGGGGAACCGGCC-A---ATCCCC
789 -GC-A---TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * ** * * *
5181122 GGGTTGCGCATCCCGCCCCTCTGG-TTG-GT--TGACCACCCGCACG--C-T-
849 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * * *
5181167 ---TC-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * ** * * *
5181228 AGGGTTGCGGTAGTAGGATTGGCAGCACACAAAGGAGGACCCGACCGAT-CCCGGCTTACGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
*
5181292 CCGCCCCTCTGGCCGACTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *
5181357 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTACG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCG
* * * ** *
5181421 GCAGCACATGCTGGGCTCGTGCATGTGCTGGTACCATATTTTTCTTCACCGGGGCACCATTGTCG
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTCG
* * ** * * *
5181486 GAGCATCGTCGGAGAACCTGATCGACAACATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGT
323 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGT
*
5181551 GCGCACATGATGTGC-ATTGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAA
388 GCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
5181615 ACCTCAAGAGCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5181680 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
5181745 AGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
582 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** * * * *
5181810 AATCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAA
647 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
5181875 AAAACGGGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
5181940 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATC
777 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* ** * * *
5182005 GATCCACGGCTTGCGCATCCCGTCCCTCTGGCCAACGTAGTGCCCGCCCACCCACCCGTG
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * **
5182065 CGCTCGTTTCGTCGGTTGGCTTTGGCATACGGTGTTCATTCCTAGTCTAGGATCAGACTGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * ** * * *
5182130 AGGGTTGCGGTAGCAGGATCGGTAGCACCCAGAGGGGGACCTGGCTGATCCCCGGCTTGCGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * * ** * * *
5182195 TCACCCCTCTGGCCGACTGAGTGCCTGTACGGTCGTTTTGTGGGTTGAGTTAAGCATATGGAGTT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *
5182260 CATTCCCAGTCTAAG-AT--TG-G---------A-T-T---A--G-ACC--A---AGGGTTGTGG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
* * ** * *
5182299 TAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCATCGGGGCACCATCGTCGG
261 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GGCACCATCGTCGG
** * *
5182364 AGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
324 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGT
*
5182429 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
388 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
5182494 GCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5182559 AAAGTGCCTGAGATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
5182624 GCTGAATTTTTTTATGCATGCACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
583 GCTGAATTTTTTTGTGCATG--CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
5182689 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATA
646 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
5182754 GAAAACGAGTTGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
711 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
5182819 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAAT
776 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
5182884 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACCCGCC
841 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
** * * *
5182945 CGCTCGTTTCGTCATTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCAGATCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * ** * *
5183010 AGCGTTGC-GATAGTAGGATCGGCAGAACACAGAGGGGGACCC-ACCGATCCCCAGCTTGTGCAT
66 AGGGTTGCAG-TAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * *
5183073 CCCGCCCCTCTAGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * *
5183138 TCATTCCTAGTCTAAG-ATTACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTAC
195 TCATTCCCAGTCTAAGCA-TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC
* * * * *
5183202 GACAGCACATGTTGGGCTCGAGCATGTGCTGGTGACACATTTTTCTTCGTCGG-------G--GC
259 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCGG
* * * * *
5183258 ACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGTGATC-CGGGGGCTGGGGGGTGT
324 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCGGGGGGGTGT
*
5183321 GCGCACATGATGTGCGATGGGTTG-TGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAA
388 GCGCACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
5183385 ACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
5183450 TATAGTGTCTGAAATGGGGATACTCTTTTCAAATGGTCACACAATCTTGTACACTTCGAGTTTTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * **
5183515 AGCTGAATTTTTTT-TTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGATGCCAAA
582 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
5183579 AATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAA
647 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
5183644 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
5183709 ACCATAAAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT
777 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
5183774 GATCCACGGTTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCTCTCGCCCGCCCGCC
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * * *
5183834 CGCTTGTTTCATCGGTTGGCTTAGTCATACGGAGTTCATTCCCAATCTAAAATCAGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * *
5183899 AGGGTT-CTAGTAGTAGGATCGGCAGCATGCAGAGGGGGAGCCGGCCGACCCCCGGCTTGCGCAT
66 AGGGTTGC-AGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * * * ** * *
5183963 CTCACCCCACTGGCCGGCTGAGCACTCGCACGCTCGTTTCGTAAGTTGACTTGGGCATACGAAGT
130 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * *
5184028 TCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGTG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
* * ** ** **
5184093 GCAGCACATGCTGGGCTCGGCCATGTGTTGGTGCCGTATTTTTCTTCACCGG-GGCA-C--C--A
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCGGA
* * * * *
5184152 TCA-C--CGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTCTG
325 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTG
* *
5184214 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAAC
389 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
5184279 CTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
454 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
5184344 AAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAG
519 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
5184409 CTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCTAAAAC
584 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
5184474 TACTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAA
649 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
5184539 AATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
714 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
5184604 CATAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
779 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
5184669 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CC-CAC-T-
844 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
* * * * *
5184719 CG-T--TTT-GTCAGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGACCGGAGTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
** * * * * * *
5184780 AGGGTTGTGGTAGCAGGATTGACAGCACGTAAATGGGGACCCGGCCGATCCCCGACTTGCGCATC
66 AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * *
5184845 CCGCCCCTC--GACGGCTAAGCGCCCGCATGCTCG-TTCTGTGGGTTAACTTAGGCATACGGAGT
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGT
* * * * * ** *
5184907 TCATTCCCAGCCTAAGCATACGAAGTTCAATCCTAGTCTAAGATCAAATTGGACCGAGGGGTGCG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
* * * **
5184972 GTAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGA-ATTTTTCTTCGCTAGGGCACCATCACC
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCG-T-CGGCACCATCGTC
* ** * *
5185036 GGAGCATCGCCGGAGAACCTGACCTACGACATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGG
322 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG--GCGGGGGGG
* *
5185101 TGTGCGCACATGATGTGCGAAGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
385 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5185166 AAACCTCGGGAACTCACACCCCCTT-AAGAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
450 AAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
5185230 CATTAAAGTGTCTGAAATGGGGAGACTGTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTT
514 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
5185295 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
579 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * *
5185360 AAAGGTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAA
644 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* ** * *
5185424 TAGAAAACGAGTCATCTTGAAATGAAACTTTACTTGAAGGCTTAAGGGACCATTGTATGAATTTA
709 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *** *
5185489 CAAGCCATAAAAATGACATTGGCACACAGAAATATGAATATGTGCCTAAACCCACCTACCACCCT
774 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
5185554 ATCAATTCACGGCTTGCGCATCCCGTCTCTCTGGC
839 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
5185589 AGTAGCATCG
Statistics
Matches: 10371, Mismatches: 1700, Indels: 968
0.80 0.13 0.07
Matches are distributed among these distances:
857 4 0.00
858 81 0.01
860 2 0.00
861 2 0.00
865 3 0.00
866 2 0.00
867 1 0.00
868 1 0.00
869 498 0.05
870 4 0.00
872 2 0.00
873 12 0.00
875 2 0.00
877 234 0.02
878 215 0.02
879 224 0.02
880 381 0.04
881 111 0.01
882 14 0.00
883 38 0.00
884 93 0.01
885 10 0.00
886 8 0.00
887 15 0.00
888 6 0.00
889 371 0.04
890 851 0.08
891 552 0.05
892 492 0.05
893 610 0.06
894 225 0.02
895 53 0.01
896 6 0.00
897 106 0.01
898 405 0.04
899 325 0.03
900 302 0.03
901 1055 0.10
902 609 0.06
903 1065 0.10
904 127 0.01
905 255 0.02
906 21 0.00
907 6 0.00
908 15 0.00
909 17 0.00
910 32 0.00
911 38 0.00
912 45 0.00
913 49 0.00
914 55 0.01
915 37 0.00
916 46 0.00
917 14 0.00
918 27 0.00
919 18 0.00
920 14 0.00
921 9 0.00
922 8 0.00
923 15 0.00
924 26 0.00
925 9 0.00
926 1 0.00
927 5 0.00
928 1 0.00
929 3 0.00
930 2 0.00
931 1 0.00
932 2 0.00
933 1 0.00
934 3 0.00
936 15 0.00
937 2 0.00
938 2 0.00
939 6 0.00
940 13 0.00
941 17 0.00
942 15 0.00
943 12 0.00
944 20 0.00
945 19 0.00
946 20 0.00
947 42 0.00
948 44 0.00
949 20 0.00
950 28 0.00
951 19 0.00
952 21 0.00
953 32 0.00
954 43 0.00
955 21 0.00
956 9 0.00
957 2 0.00
958 10 0.00
959 9 0.00
960 3 0.00
961 4 0.00
962 5 0.00
963 4 0.00
964 3 0.00
967 3 0.00
968 1 0.00
969 2 0.00
970 2 0.00
971 4 0.00
972 4 0.00
973 2 0.00
974 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
AGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCACCATCGTCGGAG
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTC
Found at i:5176869 original size:26 final size:26
Alignment explanation
Indices: 5176818--5176870 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5176808 GTTGACTTAG
*
5176818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5176844 GCATGCGGAGTTCATTCCCCA-CCTAA
1 GCATACGGAGTTCATT-CCCAGCCTAA
5176870 G
1 G
5176871 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5178615 original size:26 final size:26
Alignment explanation
Indices: 5178579--5178631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5178569 GTTGACTTAG
5178579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5178605 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5178631 G
1 G
5178632 ATCATACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5179512 original size:26 final size:26
Alignment explanation
Indices: 5179482--5179534 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5179472 GTTGACTTAG
5179482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5179508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5179534 G
1 G
5179535 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5181345 original size:158 final size:159
Alignment explanation
Indices: 5180997--5181371 Score: 430
Period size: 159 Copynumber: 2.4 Consensus size: 159
5180987 CCGTCGTAGT
* * * * * *
5180997 GCCCGCCCGCTCGTTTTATTGGTTGGCTTAGGCATACGGACTTCATTCCCAGGCTAAGATCAAAT
1 GCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
** * * * *
5181062 CGAACCGAGGGTTACAGTAGCAGGATCAACAGCACGTAGAGGGGGAACCGGCCAATCCCCGGGTT
66 CGAACCGAGGGTTACAGTAGCAGGATCAACAGCACACAAAGGAGGAACCGACCAATCCCCGGCTT
* ** **
5181127 GCGCATCCCGCCCCTCTGGTTGGTTGACC
131 ACGCATCCCGCCCCTCTGGCCGACTGACC
* * * **
5181156 ACCCGCACGCTTC-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGA
1 GCCCGCACGC-TCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * * * * *** * *
5181220 CCGGACTGAGGGTTGCGGTAGTAGGATTGGCAGCACACAAAGGAGGACCCGACCGAT-CCCGGCT
65 CCGAACCGAGGGTTACAGTAGCAGGATCAACAGCACACAAAGGAGGAACCGACCAATCCCCGGCT
5181284 TACGCATCCCGCCCCTCTGGCCGACTGACC
130 TACGCATCCCGCCCCTCTGGCCGACTGACC
*
5181314 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5181372 CATACGGAGT
Statistics
Matches: 178, Mismatches: 36, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
157 2 0.01
158 82 0.46
159 92 0.52
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
CGAACCGAGGGTTACAGTAGCAGGATCAACAGCACACAAAGGAGGAACCGACCAATCCCCGGCTT
ACGCATCCCGCCCCTCTGGCCGACTGACC
Found at i:5181375 original size:26 final size:26
Alignment explanation
Indices: 5181345--5181397 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5181335 GTTGACTTAG
5181345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5181371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5181397 G
1 G
5181398 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5184054 original size:26 final size:26
Alignment explanation
Indices: 5184017--5184069 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5184007 GTTGACTTGG
5184017 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5184043 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
5184069 G
1 G
5184070 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5184947 original size:26 final size:26
Alignment explanation
Indices: 5184896--5184948 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5184886 GTTAACTTAG
* *
5184896 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCAATCCCAGCCTAA
* *
5184922 GCATACGAAGTTCAATCCTAGTCTAA
1 GCATACGAAGTTCAATCCCAGCCTAA
5184948 G
1 G
5184949 ATCAAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGCCTAA
Found at i:5187352 original size:26 final size:26
Alignment explanation
Indices: 5187316--5187394 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
5187306 GTTGAATTAG
5187316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5187342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5187368 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5187394 G
1 G
5187395 ATTGAGCTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5190741 original size:26 final size:26
Alignment explanation
Indices: 5190705--5190755 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5190695 GTTGACTTAG
*
5190705 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5190731 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5190756 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5191600 original size:26 final size:26
Alignment explanation
Indices: 5191570--5191620 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5191560 GTTGACTTAG
*
5191570 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5191596 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5191621 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5191827 original size:865 final size:866
Alignment explanation
Indices: 5188959--5192599 Score: 4765
Period size: 865 Copynumber: 4.1 Consensus size: 866
5188949 GTTGGCTTAG
* * * *
5188959 GCATACAGAGTTTATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
*
5189023 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATGACCGAAG
66 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT---A-C---A--G-AG
* * * * * *
5189088 AACCTGACCGACAGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
121 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTG
* * *
5189153 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAC
186 CCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5189218 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
251 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5189283 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTT
316 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTCTTG
* * * *
5189348 TGCATGCCAACAGAAATACAAGCATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCCAAAAAA
381 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAA
* * * *
5189413 ATTTTACAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCGT
446 ATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTT
* * * **
5189478 GCCATGAAACTTCACGTAAAGGTTTAAGGGACCATTGTATGAATTTTCAAGTCATAAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCA
** ** * * *
5189543 TTGTCATGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
576 TTGGAATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* *
5189608 CATCCCGTCTCTCTGGCCTGCGTAGTGCCCG--C-CCGCCCG-CTCGCTCGTTCCGTCGGTTGGC
641 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTTCGCCGCCCGAC-CGCTCGTTTCGTCGGTTGGC
* * * *
5189669 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCAGTAGCAGGAT
705 TTAGGCAAACGCAGTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTACAGTAGCAGGAT
* * *
5189733 CGACAGAACACAGAGGGGGACCCAACCGATCCCTGGCTTGTGCATCCCGGCCCTCTAGCCGGCTA
769 CGACAGGACACAGAGGGGGACCCGACCGATCCCCGGC-T-TG--T----G--C-CT-----G-T-
5189798 AGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
816 A-----CG--C--TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
5189857 GCATACGGAGTTCATTCCCATTGTAAGATCAGA-CTGGACCAAGGGTGGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
5189921 G-TCAGTGCATGCTGGCTGGTGCCGCATCTTTTCTTCACCGGGGCACCATCGACGAGCATCGTCC
66 GCT-AGGGCATG-T-GCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCG--TA-CA------
* *
5189985 GGAGAACCTGACCAAC-GCATT-GGG--TCGGCGATCCGGGGGGGGC-GGGGGTGTGCGCCACAT
118 -GAGAACCTGACCGACGGCATTGGGGTTTCGGCGAT-CGGGGGGGGCTGGGGGTGCGCG-CACAT
5190045 GATGT-CCATGGGTGCCTGGGTACTTGGCCCTTATA-TGG-CCCCTATCGCCTCATCAAA-CTCG
180 GATGTGCCATGGGTG-CT-GGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCG
*
5190106 AGAACTCACACCCCCTT-AAGACGCATTTGAGAATTTTACAGGTTTGCTG-CAG-AGCCATTAAA
242 AGAACTCACACCCCCTTAAAG-TGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
5190168 GTGTCTGAAATGGGGACAC-TTTTTCAAAATGGTCACACAATCTTGTACACTTCGAGTTTTAAGC
305 GTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
** *
5190232 TGAATTTTCTTGTGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTAGGACCAAAACT
369 TGAATTTTCTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT
** *
5190297 CCTTCCCCAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAAAAGAAA
434 CCTTCCAAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAA
5190362 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACC
499 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACC
**
5190427 ATAAAAATGGCATTGGCTTCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
564 ATAAAAATGGCATTGGAATCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
5190492 CCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGTTCGCCTGCCCGACCGCTCGTT
629 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTTCGCC-GCCCGACCGCTCGTT
* * * * *
5190557 TTGTCTGTTGGCTTGGGCAAACGCAGTTCATTCCCAGTCTAAGGTCGGATCAGACCGAGGGTTAC
693 TCGTCGGTTGGCTTAGGCAAACGCAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTAC
* * * *
5190622 GGTAGTAGGATCGACAGGACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCCTGTACACTCG
758 AGTAGCAGGATCGACAGGACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCCTGTACGCTCG
5190687 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
823 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
*
5190731 GCATACGGAGTTCATTCCCAGTCTATGATCGGATC-GAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
*
5190795 GCTAGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGT-CAGAGAACCTGACCG
66 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTACAGAGAACCTGACCG
5190859 ACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTGCCATGGGTGC
131 ACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTGCCATGGGTGC
*
5190924 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
5190989 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5191054 TTTTCAAATGGTCACACAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTCTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTCTTGTGCATGCCAA
* * *
5191119 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCCAAAAAATTTTAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTACAAA
* * *
5191184 ATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGTGTCGTCTTGCCATGAAAC
456 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAAC
5191249 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGAATCCA
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGAATCCA
* *
5191314 TAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCT
586 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
*
5191379 CTCTGGCCGGCGTAGTGCCCGTTCGCCTGCCCGACCGCTCGTTTCGTCGGTTGGCTTGGGCAAAC
651 CTCTGGCCGGCGTAGTGCCCGTTCGCC-GCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCAAAC
* *
5191444 GCAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACAGTAGTAGGATCGACAGGACGC
715 GCAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACAGTAGCAGGATCGACAGGACAC
*
5191509 AGAGGGGGACCCGACCGATCCCCGGCTTGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCAT
780 AGAGGGGGACCCGACCGATCCCCGGCTTGTGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
5191574 ACGGAGTTCATTCCTAGTCTAA
845 ACGGAGTTCATTCCTAGTCTAA
*
5191596 GCATACGGAGTTCATTCCCAGTCTATGATCGGATC-GAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
*
5191660 GCTAGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGT-CAGAGAACCTGACCG
66 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTACAGAGAACCTGACCG
5191724 ACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTGCCATGGGTGC
131 ACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTGCCATGGGTGC
*
5191789 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
5191854 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
5191919 TTTTCAAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTCTTGTGCATGCCAA
* * * * *
5191984 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTACAAAAAAATTTTACAAA
391 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTACAAA
** * * *
5192049 ATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAAC
456 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
5192114 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATAGCATTGGCACAT-
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGG-A-ATC
* * **
5192178 -AGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGT
584 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
* * ** ** * * *
5192242 CTCACTGGCCGACGTAGTGGTCGCCCAGACGCCC-ATCCGCTTGTTTCATCGGTTGGCTTAGGCA
649 CTCTCTGGCCGGCGTAGTGCCCGTTC-GCCGCCCGA-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * **
5192306 TAGGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACTGAGGGTTGC-GATAGCAGGATCGGTAG
712 AACGCAGTTCATTCCCAGTCTAAGATCGGATC-AGACTGAGGGTTACAG-TAGCAGGATCGACAG
* ** * * * *
5192369 CATGCAGAAGGGGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTTTAGCCAGCAGAGCACC
775 GACACAGAGGGGGACCCGACCGATCCCCGGCTT--G-----TG--CC--T----------GTA--
* *
5192434 CGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATT-CTCAGTCTAA
817 CGCTCG-T--TT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAA
* * * * * *
5192488 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5192552 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCG
66 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
5192600 CCCGAGCATC
Statistics
Matches: 2489, Mismatches: 177, Indels: 160
0.88 0.06 0.06
Matches are distributed among these distances:
860 14 0.01
861 5 0.00
862 20 0.01
863 52 0.02
864 70 0.03
865 1287 0.52
866 9 0.00
867 5 0.00
871 20 0.01
872 15 0.01
873 40 0.02
874 71 0.03
875 3 0.00
876 1 0.00
877 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
886 2 0.00
888 5 0.00
889 3 0.00
890 1 0.00
891 4 0.00
892 137 0.06
893 1 0.00
895 6 0.00
896 341 0.14
897 67 0.03
898 113 0.05
899 26 0.01
900 130 0.05
901 35 0.01
902 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (866 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCTGAACCGAGGGTTGCGGCAGCACATGCTGG
GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTACAGAGAACCTGACCG
ACGGCATTGGGGTTTCGGCGATCGGGGGGGGCTGGGGGTGCGCGCACATGATGTGCCATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTCTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTACAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGAATCCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGTTCGCCGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCAAACG
CAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACAGTAGCAGGATCGACAGGACACA
GAGGGGGACCCGACCGATCCCCGGCTTGTGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCTAGTCTAA
Found at i:5192498 original size:26 final size:26
Alignment explanation
Indices: 5192462--5192514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5192452 GTTGACTTAG
5192462 GCATACAGAGTTCATT-CTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
*
5192488 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
5192514 G
1 G
5192515 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:5194762 original size:26 final size:26
Alignment explanation
Indices: 5194726--5194793 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
5194716 TAGGCATACG
*
5194726 GAGTTCATTCCCAGTCTAAGGATATA
1 GAGTTCATTCCCAGTCTAAGCATATA
5194752 GAGTTCATTCCCAGTCTAAGCATATA
1 GAGTTCATTCCCAGTCTAAGCATATA
5194778 GAGTTCATTCCCAGTC
1 GAGTTCATTCCCAGTC
5194794 CAAGATCAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATATA
Found at i:5195668 original size:26 final size:26
Alignment explanation
Indices: 5195639--5195691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5195629 GTTGACTTAG
* *
5195639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
5195665 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
5195691 G
1 G
5195692 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:5196037 original size:906 final size:897
Alignment explanation
Indices: 5192687--5197888 Score: 5858
Period size: 896 Copynumber: 5.8 Consensus size: 897
5192677 TGATGTACGA
* * *
5192687 CACCTACCACCCTATCGATCCACAGCTTGTGTATCCCGTCTCTCTGGCCGGCATAGT---GCCCG
1 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCGCCCG
* * * * *
5192749 TCCA--CCCGTTCCTTTCGTCAGTTGCCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-GA
66 -CCATGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * ** * * * * ** * ** *
5192811 ATCGAACCGAGGGTTGTGCCACCAGGATCGGCTA-CATGCAGTGGCAGACCCGACCGATCCTCGG
129 ACCAAAATGAGGGTTGAG-TAGCAGGATCGAC-AGCACACAGAGGGGGACCCGACCGATCCCCGG
* * * * * *
5192875 CTTGCGCATCCCGTCCCTCTGGCTGGCTGCGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGC
192 CTTACGCATCCCGCCCCTCTGGC-GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * * * * *
5192940 ATACGGAGTTCATTCCCAATCTAAGCATAC-GAAGTTCATTGCAAGCCTAAGATTGGACCGGATC
256 ATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * **
5193004 GAGGGTTGCGGCAGCACATGTTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG-
320 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * * *
5193068 --CA----C----CATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCTATCGGAGGGGC
385 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAG-GGGGC
* * *
5193123 CGGGGGTGTTGTGCACACATGAGGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTA
449 CGGGGG-G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** *
5193188 TCCCCCATCAAACCTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
512 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5193253 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
577 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
5193318 TTCGAGTTTTTTGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGT
642 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGT
* * * **
5193383 TTGGGACCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
707 TTGGGGCCAAAACTCCTATCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAAT
* * *
5193447 CATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGTTTAAGGGACCATTCT
772 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
5193512 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
837 ATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACC
* * * **
5193573 CACCTACCACCCTA-CTGATCCACGGCTTGCGAATCCCATCTCTCTAGCCGGCGCAGTGCCCGCC
1 CACCTACCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-CCGCC
** * * * * *
5193637 CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGGATA-GGAGCTCCTTCCCAATCTAAGAT
64 CG--C-CATGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
5193701 CAGACCAGACTGAGGGTT-ACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCC
126 CAGACCAAAATGAGGGTTGA--GTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
* * * * * *
5193765 CGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTA
189 CGGCTTACGCATCCCGCCCCTCTGG-CGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTA
*
5193830 -G----C------CA-T----G-C---G------GAGTTCATTCCCAGTCTAAGATCGGACCAAA
253 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * ** * *
5193869 CCGAGGGTTGCGGCAGCACAAGCTGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCATCGCCGGG
318 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
** * *
5193934 GCACCATCGTCGGAGCGTCGCCGGAGCATCGTCGGAGAATTTGACCGGCGACATTGGGGTTCCGA
383 G---CA-C--C--A---TCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
**
5193999 CGATCAGGGGGCCGGGGGGTGTGCGCTTATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
437 CGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
5194064 TGGCCGCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
502 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* ** *
5194129 AGGTTCGCCACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
567 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
5194194 TCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATG
632 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
5194259 CCTACCAAGTTTGGGGCCAAAAAT-CTGTCGGAAAAAATTTAAAAAAAAATCCCGAACCGCAAAA
697 CCTACCAAGTTTGGGGCCAAAACTCCTATCTGAAAAAATTT--TAAAAAATCTCGAACCGCAAAA
* * * * *
5194323 AGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTTACCATGTAACTTCACATGAAGGCTTA
760 AGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
5194388 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATG
825 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G-ACATGCAGAAATATGAAGATG
5194451 TGCCTAAACC
888 TGCCTAAACC
* * * *
5194461 CACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTTTCTGGCCGGCATAGTGTCTGCCC
1 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-CCGCCC
* * *
5194526 GCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
65 G-CCAT--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** ** * *
5194591 GGACCAGACTGAGGGTTGAGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGAT-CCTG
127 AGACCAAAATGAGGGTTGA-GTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCG
* * * * * ** *
5194655 GTTTACGCATCTCGCCACTCTGTCCGACTGAGCACCCGCACGCTCATTTAGTGGGTTGACTTAGG
191 GCTTACGCATCCCGCCCCTCTG-GCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
5194720 CATACGGAGTTCATTCCCAGTCTAAGGATATAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCA
255 CATACGGAGTTCATTCCCAGTC--------TA-AG--------CA---T-A-C----AGAGTTCA
* *
5194785 TTCCCAGTCCAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGC
294 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGC
* *
5194849 TGGTGCCGCATTTTTCTTCGCCGGGGCACCAT--------CA---TCGGAGAACCTGACCGACGG
358 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGG
* * * *
5194903 TATTGGGGTTCCGACAATCTAGAGGGTCGGGGGGTGTGCGCACATGATGT-CTGATGGGTGCTGG
423 CATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTGG
*
5194967 TACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
486 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* * *
5195032 CCATTTGAGATTTTACAGGTTCGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
551 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5195097 TCAAATGGTCATAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
616 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * ** * *
5195162 AAATAAAAGGATCACGCCTATCAAGTTTGGGTTCAGAATTCCT-TCTGAAAAAATTTTAAAAAAT
681 AAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTATCTGAAAAAATTTTAAAAAAT
* *
5195226 CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTT
746 CTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
5195291 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGA
811 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGA
5195356 AATATGAAGATGTGCCTAAACC
876 AATATGAAGATGTGCCTAAACC
* * *
5195378 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGC-TTGTGCCCGCCC
1 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-CCGCCC
* * *
5195442 GCTCATCCGCCCGTCTGCTCGTTTTGTCGGTTGGCTTGGGCATACAGAGTTCATTCCCTA-TCTA
65 GC-CAT--G-CC--C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTA
* *
5195506 AGATCAGACCAAAATGAGGGTTGTGTTAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGAT
122 AGATCAGACCAAAATGAGGGTTGAG-TAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGAT
* * * *
5195571 CCCCGGCTTGCGCATCCCGCCCCTCTGGC-GTTGAGTGCCCCGTACGCTCGTTTCGTGGGTTGAC
186 CCCCGGCTTACGCATCCCGCCCCTCTGGCGGCTGAGTG-CCCGCACGCTCATTTCGTGGGTTGAC
* *
5195635 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCGGATC
250 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
5195700 AGATCAAGGGTTGCGGCCGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
315 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC
* * *
5195765 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCGACGGTCGGA
380 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--A
* * *
5195830 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTCGCCC
443 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
5195895 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
508 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
5195960 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
573 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * ** **
5196025 ACGCTTTGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACGGGGATCGTGCCTACC
638 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACC
*
5196090 AAGTTTGGGGACAAAACTCCTATC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGA
703 AAGTTTGGGGCCAAAACTCCTATCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGA
*
5196154 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
768 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * **
5196219 TAGTATGAATTTACAAGCCATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
833 TTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
5196284 CACCTACCACCCTATCGATCCACGGCTTGCGTAACCCGTCTCTC-GGATCGGCGTAGTTGCCG--
1 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGGCATAG-TGCCGCC
** * *
5196346 C-CCA--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTATAAGATTAG
64 CGCCATGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * *
5196408 A-CTAGATCGAGGGTTGAAATAGCAAGATC-AGTAGCACACAGAGGTGGACCCGGCCGATCCCTG
129 ACCAAAAT-GAGGGTTG-AGTAGCAGGATCGA-CAGCACACAGAGGGGGACCCGACCGATCCCCG
* * * * * **
5196471 ACTTGCGCATCCCGCCCCTCTGGCTGGCTAAGAGCCCGCATGCTTGTTTCGTGGGTTGACTTAGG
191 GCTTACGCATCCCGCCCCTCTGGC-GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * ** ** * *
5196536 GATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCATACCGGATC
255 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * * *
5196601 GAGGGTTACGGTAGCACACGCTGGGCTCGAGCATGTG-TCGGTGCCATAATTTGCTTCGTCGGGG
320 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGG
** ** * * * * *
5196665 CACCATCGTTGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGG
384 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGG
*
5196730 TCGGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
448 -C--CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * **
5196795 CTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTCGATTTTACAGGTTTG
509 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
5196860 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGATCACAAAATCTTGTA
574 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** * *
5196925 CACTTCGAGTTTTTAAATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACG--T-CTA
639 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCA
* * * **
5196987 AGTTTGGGGCCAAAACTCCT-TTTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
704 AGTTTGGGGCCAAAACTCCTATCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAA
* * *
5197051 AATCATGAAAAATAGAAAAC-AGGTCATCTTGCAATGAAACTTCATGTGAAGGCTTAAGGGACCA
769 AATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
5197115 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATATGCCTAAACC
833 TTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
5197180 CACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTTGCCAGCATAGT---GCCCG
1 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCGCCCG
* * *
5197242 CC-TGCCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATC-GAA
66 CCATGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* *** * * * * * **
5197305 TCAAACCAAGGGTTACAGTAGCAGGATCGACAACACGCAGAGGGGGAACC-AGTCGATCTTCGGC
130 CCAAAATGAGGGTT-GAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCGGC
* *
5197369 TTACGCATCCTGCCCCTCTGGCAGGCTGAGTGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCA
193 TTACGCATCCCGCCCCTCTGGC-GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * **
5197434 TATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACTGGACCGA
257 TACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* ** * *
5197499 GGGTTGCGGTC-GCACATGCTGGGCTCGAGCATGTGCTGGTGTCGA-ATTTTTCTTTATCGAGAC
322 GGGTTGCGG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CCACATTTTTCTTCGTCGGGGC
* * * * * * *
5197562 ACCATCGTCGGGGCATTGCCTGAGAACCT-AGCCGATGGCATTGGGGTTCCGGCGATCAGGGGGC
385 ACCATCGCCGGAGCATCGTCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCAGGGGGC
* * **
5197626 CGGGGGGTTTGCGCACATGATGTGCGATGGGAGCTGGTACTTCACCCTTATATTGGCCCCCTATC
449 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** *
5197691 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
514 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
5197756 AGTCGCAATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTT
579 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
5197821 TGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAACAAAAGGATCACGTCTAGCAAGTTT
644 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTT
5197886 GGG
709 GGG
5197889 TTCAAAATAG
Statistics
Matches: 3694, Mismatches: 459, Indels: 318
0.83 0.10 0.07
Matches are distributed among these distances:
867 81 0.02
868 1 0.00
873 1 0.00
876 2 0.00
878 1 0.00
881 1 0.00
882 2 0.00
885 6 0.00
886 302 0.08
887 3 0.00
888 288 0.08
889 113 0.03
890 9 0.00
891 225 0.06
892 5 0.00
893 122 0.03
894 138 0.04
895 133 0.04
896 701 0.19
897 13 0.00
898 3 0.00
899 229 0.06
900 2 0.00
902 2 0.00
903 4 0.00
904 2 0.00
905 38 0.01
906 464 0.13
907 8 0.00
908 2 0.00
911 2 0.00
912 2 0.00
915 5 0.00
916 16 0.00
917 194 0.05
918 34 0.01
919 272 0.07
920 149 0.04
921 24 0.01
929 1 0.00
932 1 0.00
934 1 0.00
936 1 0.00
937 2 0.00
939 1 0.00
940 88 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCGCCCG
CCATGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAAAATGAGGGTTGAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTA
CGCATCCCGCCCCTCTGGCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCA
AAACTCCTATCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACC
Found at i:5197467 original size:26 final size:26
Alignment explanation
Indices: 5197431--5197482 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5197421 GTTGACTTAG
*
5197431 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5197457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5197483 AATCGGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5199169 original size:26 final size:26
Alignment explanation
Indices: 5199133--5199185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5199123 GTTGACATAG
5199133 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5199159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5199185 G
1 G
5199186 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5199856 original size:46 final size:46
Alignment explanation
Indices: 5199807--5199896 Score: 153
Period size: 46 Copynumber: 1.9 Consensus size: 46
5199797 ACTTTTTCCC
*
5199807 AAAAATACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACCCA
1 AAAAATA-TTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACCCA
*
5199854 AAAAATATTTTTTTGGAAATTTATTTTTAAGAAAAATTGATAC
1 AAAAATATTTTTTTGAAAATTTATTTTTAAGAAAAATTGATAC
5199897 TTTCAACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 34 0.83
47 7 0.17
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.42
Consensus pattern (46 bp):
AAAAATATTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACCCA
Found at i:5199953 original size:60 final size:58
Alignment explanation
Indices: 5199854--5200048 Score: 277
Period size: 58 Copynumber: 3.3 Consensus size: 58
5199844 TTGATACCCA
* *
5199854 AAAAATATTTTTTTGGAAATTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTC
1 AAAAATATTTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC
**
5199912 AAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTC
1 AAAAATATTTTTTTTGAAA-TTT-ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC
***
5199972 AAAAA-CCCTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-C
1 AAAAATATTTTTTTTG-AAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC
5200029 TAAAAATATTTTTTTTGAAA
1 -AAAAATATTTTTTTTGAAA
5200049 ATTTTGATTT
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
57 1 0.01
58 58 0.48
59 20 0.17
60 41 0.34
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (58 bp):
AAAAATATTTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC
Found at i:5200088 original size:14 final size:14
Alignment explanation
Indices: 5200069--5200098 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5200059 TTATTTAAAG
*
5200069 AAAATAGAATAATA
1 AAAATAGAAAAATA
5200083 AAAATAGAAAAATA
1 AAAATAGAAAAATA
5200097 AA
1 AA
5200099 GGAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5200606 original size:11 final size:11
Alignment explanation
Indices: 5200590--5200629 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
5200580 TATGGGTTTT
5200590 TTCACCGAAAG
1 TTCACCGAAAG
*
5200601 TTCACCAAAAG
1 TTCACCGAAAG
*
5200612 TTCACCGGAAG
1 TTCACCGAAAG
*
5200623 GTCACCG
1 TTCACCG
5200630 GTTTCTGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (11 bp):
TTCACCGAAAG
Found at i:5201218 original size:10 final size:10
Alignment explanation
Indices: 5201203--5201337 Score: 65
Period size: 10 Copynumber: 13.9 Consensus size: 10
5201193 ATTACAAGAA
5201203 AAATAATAAT
1 AAATAATAAT
5201213 AAATAATAAT
1 AAATAATAAT
5201223 -AAT-A-AAT
1 AAATAATAAT
*
5201230 AAATTATAAT
1 AAATAATAAT
*
5201240 ATATAATAAAT
1 AAATAAT-AAT
* *
5201251 ATAGAACTATAT
1 AAATAA-TA-AT
5201263 AAATAA-AAT
1 AAATAATAAT
*
5201272 ACATAA-AAT
1 AAATAATAAT
* *
5201281 -ATTAACAA-
1 AAATAATAAT
*
5201289 AAA-AAAAAT
1 AAATAATAAT
5201298 AAATAAGTAA-
1 AAATAA-TAAT
5201308 AAAT-ATACAT
1 AAATAATA-AT
*
5201318 ATAATAATAAC
1 A-AATAATAAT
5201329 AAATAATAA
1 AAATAATAA
5201338 AATACATAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
7 3 0.03
8 13 0.13
9 22 0.22
10 34 0.35
11 16 0.16
12 10 0.10
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (10 bp):
AAATAATAAT
Found at i:5201326 original size:14 final size:14
Alignment explanation
Indices: 5201309--5201350 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
5201299 AATAAGTAAA
5201309 AATATACATATAAT
1 AATATACATATAAT
*
5201323 AATA-ACAAATAAT
1 AATATACATATAAT
* *
5201336 AAAATACATAAAAT
1 AATATACATATAAT
5201350 A
1 A
5201351 CAAAAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (14 bp):
AATATACATATAAT
Found at i:5201555 original size:1 final size:1
Alignment explanation
Indices: 5201549--5201599 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
5201539 AACATTGTCA
* * * * *
5201549 TTTTTTTTTGTGTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5201600 ACCAAAGCTC
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:5201568 original size:14 final size:13
Alignment explanation
Indices: 5201549--5201596 Score: 71
Period size: 14 Copynumber: 3.7 Consensus size: 13
5201539 AACATTGTCA
*
5201549 TTTTTTTTTG-TG
1 TTTTTTTTTGTTT
5201561 TTTTTTTTTGTTT
1 TTTTTTTTTGTTT
5201574 TTTGTTTTTTGTTT
1 TTT-TTTTTTGTTT
5201588 TTTTTTTTT
1 TTTTTTTTT
5201597 TTTACCAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 10 0.30
13 10 0.30
14 13 0.39
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:5201581 original size:24 final size:22
Alignment explanation
Indices: 5201549--5201599 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 22
5201539 AACATTGTCA
5201549 TTTTTTTTTGTGTTTTTTTTTGT
1 TTTTTTTTTGTGTTTTTTTTT-T
*
5201572 TTTTTGTTTTTTGTTTTTTTTTT
1 TTTTT-TTTTGTGTTTTTTTTTT
5201595 TTTTT
1 TTTTT
5201600 ACCAAAGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (22 bp):
TTTTTTTTTGTGTTTTTTTTTT
Found at i:5201738 original size:42 final size:42
Alignment explanation
Indices: 5201606--5201979 Score: 504
Period size: 42 Copynumber: 9.1 Consensus size: 42
5201596 TTTTACCAAA
* * *
5201606 GCTCCTCTAAACAAAGGCTCAACGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
**
5201649 GCTCCTCTAAACAGAGGCACCGTGACTTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
5201690 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
5201732 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
5201773 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
* * *
5201815 ACTCCTCTAAATAGAGGCACCACGAC-TTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
* *
5201856 GCT-C-CT------AGGCACTACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
5201890 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAATAAATT
*
5201932 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
5201974 GCTCCT
1 GCTCCT
5201980 TGATAATCAT
Statistics
Matches: 298, Mismatches: 19, Indels: 29
0.86 0.05 0.08
Matches are distributed among these distances:
33 11 0.04
34 16 0.05
35 1 0.00
36 2 0.01
39 2 0.01
40 1 0.00
41 94 0.32
42 143 0.48
43 25 0.08
44 3 0.01
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:5201746 original size:83 final size:83
Alignment explanation
Indices: 5201606--5201979 Score: 543
Period size: 83 Copynumber: 4.6 Consensus size: 83
5201596 TTTTACCAAA
* * * *
5201606 GCTCCTCTAAACAAAGGCTCAACGAC-TTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-GTAAATTGCTCCTCTAAACAGAGGCACC
**
5201670 GTGACTTTTG-AAAATAAATT
64 ACGAC-TTTGAAAAATAAATT
*
5201690 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
5201755 GACTTTGAAAAATAAATT
66 GACTTTGAAAAATAAATT
* *
5201773 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTACTCCTCTAAATAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
5201838 GACTTTGAAAAATAAATT
66 GACTTTGAAAAATAAATT
*
5201856 GCT-C-CT------AGGCACTACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
5201913 GACTTTGAGAAAGTAAATT
66 GACTTTGA-AAAATAAATT
5201932 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCT
5201980 TGATAATCAT
Statistics
Matches: 266, Mismatches: 13, Indels: 22
0.88 0.04 0.07
Matches are distributed among these distances:
75 56 0.21
76 12 0.05
77 1 0.00
78 2 0.01
81 2 0.01
82 5 0.02
83 124 0.47
84 60 0.23
85 4 0.02
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAATT
Found at i:5201873 original size:33 final size:34
Alignment explanation
Indices: 5201829--5201895 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
5201819 CTCTAAATAG
5201829 AGGCACCACGAC-TTTGAAAAATAAATTGCTCCT
1 AGGCACCACGACTTTTGAAAAATAAATTGCTCCT
* * *
5201862 AGGCACTACGACTTTTGGAAAGTAAATTGCTCCT
1 AGGCACCACGACTTTTGAAAAATAAATTGCTCCT
5201896 CTAAACAGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 11 0.37
34 19 0.63
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (34 bp):
AGGCACCACGACTTTTGAAAAATAAATTGCTCCT
Found at i:5203257 original size:23 final size:21
Alignment explanation
Indices: 5203226--5203292 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 21
5203216 TTTGAATCTC
5203226 CTTTTTTTTCATTTTCTCATTT
1 CTTTTTTTTC-TTTTCTCATTT
* *
5203248 CTTTTTTTTTCCTTTTTTCATCAT
1 C-TTTTTTTT-CTTTTCTCAT-TT
*
5203272 CTTTTTTCTCTTTTCTCATTT
1 CTTTTTTTTCTTTTCTCATTT
5203293 TTCATCCATT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.03
22 10 0.27
23 23 0.62
24 3 0.08
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTTTTTTTCTTTTCTCATTT
Found at i:5203264 original size:24 final size:23
Alignment explanation
Indices: 5203227--5203278 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
5203217 TTGAATCTCC
*
5203227 TTTTTTTTCATTTTCTCAT-TTCT
1 TTTTTTTTCATTTT-TCATCATCT
*
5203250 TTTTTTTTCCTTTTTTCATCATCT
1 TTTTTTTT-CATTTTTCATCATCT
5203274 TTTTT
1 TTTTT
5203279 CTCTTTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTCATTTTTCATCATCT
Found at i:5204443 original size:12 final size:12
Alignment explanation
Indices: 5204426--5204454 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
5204416 AGTAATTCCA
5204426 TAGTGATAGTCG
1 TAGTGATAGTCG
5204438 TAGTGATAGTCG
1 TAGTGATAGTCG
5204450 TAGTG
1 TAGTG
5204455 GGCTGTAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.07, G:0.34, T:0.34
Consensus pattern (12 bp):
TAGTGATAGTCG
Found at i:5207132 original size:6 final size:6
Alignment explanation
Indices: 5207121--5207149 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
5207111 TAGTTAAAGA
5207121 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
5207150 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:5207276 original size:59 final size:59
Alignment explanation
Indices: 5207184--5207362 Score: 279
Period size: 59 Copynumber: 3.0 Consensus size: 59
5207174 TCTTATGTAG
5207184 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
* **
5207243 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
5207303 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
5207363 TTTAAAGAAA
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
58 2 0.02
59 48 0.44
60 47 0.43
61 13 0.12
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
Found at i:5207389 original size:14 final size:14
Alignment explanation
Indices: 5207370--5207427 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5207360 TTATTTAAAG
*
5207370 AAAATAGAATAATA
1 AAAATAGAAAAATA
5207384 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
5207398 AATAAAAGTAAAACA
1 AA-AATAGAAAAATA
5207413 AAAAT--AAAAATA
1 AAAATAGAAAAATA
5207425 AAA
1 AAA
5207428 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.16
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5207397 original size:17 final size:17
Alignment explanation
Indices: 5207377--5207427 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
5207367 AAGAAAATAG
5207377 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
*
5207394 AATAAATAAAAGTAAAAC
1 AAT-AATAAAAATAAAAC
*
5207412 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
5207428 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:5207427 original size:11 final size:11
Alignment explanation
Indices: 5207380--5207438 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
5207370 AAAATAGAAT
5207380 AATAAAAATAGA
1 AATAAAAATA-A
5207392 AA-AATAAATAA
1 AATAA-AAATAA
5207403 AAGTAAAACA-AA
1 AA-TAAAA-ATAA
5207415 AATAAAAATAA
1 AATAAAAATAA
* *
5207426 AATTAAGATAA
1 AATAAAAATAA
5207437 AA
1 AA
5207439 AGAATATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
10 1 0.03
11 23 0.57
12 13 0.32
13 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:5207436 original size:17 final size:16
Alignment explanation
Indices: 5207414--5207453 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5207404 AGTAAAACAA
*
5207414 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
5207430 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
5207447 AAATAAA
1 AAATAAA
5207454 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:5207497 original size:24 final size:25
Alignment explanation
Indices: 5207462--5207508 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
5207452 AACCTAATCT
*
5207462 AATAAATAAAAA-AACAAAAAAACA
1 AATAAATAAAAATAAAAAAAAAACA
*
5207486 AATAAATGAAAATAAAAAAAAAA
1 AATAAATAAAAATAAAAAAAAAA
5207509 AAAAAAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.83, C:0.04, G:0.02, T:0.11
Consensus pattern (25 bp):
AATAAATAAAAATAAAAAAAAAACA
Found at i:5207909 original size:11 final size:11
Alignment explanation
Indices: 5207890--5207941 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
5207880 TCTGGGTTTT
*
5207890 TTCATCGGAAG
1 TTCACCGGAAG
5207901 TTCACCGGAAG
1 TTCACCGGAAG
*
5207912 TTCATCGGAAG
1 TTCACCGGAAG
*
5207923 TTCACTGGAAG
1 TTCACCGGAAG
*
5207934 GTCACCGG
1 TTCACCGG
5207942 TTTCTGGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:5207917 original size:22 final size:22
Alignment explanation
Indices: 5207890--5207933 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5207880 TCTGGGTTTT
5207890 TTCATCGGAAGTTCACCGGAAG
1 TTCATCGGAAGTTCACCGGAAG
*
5207912 TTCATCGGAAGTTCACTGGAAG
1 TTCATCGGAAGTTCACCGGAAG
5207934 GTCACCGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (22 bp):
TTCATCGGAAGTTCACCGGAAG
Found at i:5208543 original size:14 final size:14
Alignment explanation
Indices: 5208514--5208553 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
5208504 TACAAGAAAA
*
5208514 ATAATAAAAAAAATT
1 ATAAT-AAATAAATT
5208529 ATAATAAATAAATT
1 ATAATAAATAAATT
*
5208543 ATAATATATAA
1 ATAATAAATAA
5208554 TAAATATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATAAATAAATT
Found at i:5208626 original size:36 final size:35
Alignment explanation
Indices: 5208569--5208648 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 35
5208559 ATAGAACTAT
*
5208569 ATAAATAAAATACATATAAATATTA-ATAGAAAAATAA
1 ATAAAT-AAATACATAAAAATA-TACATAGAAAAAT-A
* *
5208606 ATAAATAAATA-AGTAAAAATATACATATAATAATA
1 ATAAATAAATACA-TAAAAATATACATAGAAAAATA
5208641 ATAAATAA
1 ATAAATAA
5208649 TAAAATACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
35 12 0.32
36 20 0.53
37 6 0.16
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (35 bp):
ATAAATAAATACATAAAAATATACATAGAAAAATA
Found at i:5208644 original size:27 final size:27
Alignment explanation
Indices: 5208604--5208664 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
5208594 ATAGAAAAAT
*
5208604 AAATAAATAAATAAGTAA-AAATATACATA
1 AAAT-AAT-AATAAATAATAAA-ATACATA
*
5208633 TAATAATAATAAATAATAAAATACATA
1 AAATAATAATAAATAATAAAATACATA
5208660 AAATA
1 AAATA
5208665 CAAAAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 19 0.68
28 6 0.21
29 3 0.11
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAATAATAAATAATAAAATACATA
Found at i:5208650 original size:24 final size:23
Alignment explanation
Indices: 5208569--5208650 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 23
5208559 ATAGAACTAT
* *
5208569 ATAAATAAAATACATATAAATATTA
1 ATAAA-AATATACATAT-AATAATA
*
5208594 ATAGAAAA-ATAAATA-AATAAATA
1 ATA-AAAATATACATATAAT-AATA
5208617 AGTAAAAATATACATATAATAATA
1 A-TAAAAATATACATATAATAATA
5208641 ATAAATAATA
1 ATAAA-AATA
5208651 AAATACATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
22 3 0.06
23 12 0.25
24 23 0.48
25 8 0.17
26 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
ATAAAAATATACATATAATAATA
Found at i:5208664 original size:24 final size:23
Alignment explanation
Indices: 5208575--5208664 Score: 67
Period size: 24 Copynumber: 3.7 Consensus size: 23
5208565 CTATATAAAT
*
5208575 AAAATACATATAAAT-ATTAATAGA
1 AAAATACATA-AAATAATAAATA-A
* *
5208599 AAAATAAAT-AAATAAATAAGTAA
1 AAAATACATAAAAT-AATAAATAA
5208622 AAATATACATATAATAATAATAAATAA
1 AAA-ATAC--ATAA-AATAATAAATAA
5208649 TAAAATACATAAAATA
1 -AAAATACATAAAATA
5208665 CAAAAGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
22 4 0.08
23 4 0.08
24 20 0.38
25 4 0.08
26 2 0.04
27 13 0.25
28 6 0.11
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATACATAAAATAATAAATAA
Found at i:5209569 original size:25 final size:26
Alignment explanation
Indices: 5209518--5209569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5209508 GTTGACTTAG
*
5209518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5209544 GCATACAGAGTTTATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5209569 G
1 G
5209570 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5210590 original size:709 final size:708
Alignment explanation
Indices: 5209602--5210993 Score: 2173
Period size: 709 Copynumber: 2.0 Consensus size: 708
5209592 GACAGCAAAA
* * * *
5209602 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGCGGCACCATCGTCGGAGCATCGC
1 GCTGGGCACGGGCATCTGCTGGTGCCGCATTTTTCTTCGTCGCGGCACCATCATAGGAGCATCGC
* * ****
5209667 TGGAGAACCTGACCGGTGGCATTAGGGTTCCGGCGATCGGGGGGGTAGGGGGTGTGCGCACATGA
66 TGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGAACCAGGGGGTGTGCGCACATGA
*
5209732 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGAGAAC
131 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGAGAAC
5209797 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCCGTAGCCATTATAGTGTCTG
196 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCCGTAGCCATTATAGTGTCTG
* * * *
5209862 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTT
261 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGAATGTT
* *
5209927 TTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGAGG-CCAAAACTCCTTCCG
326 TTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGAGGTCC-AAACTCCTTCCG
* * *
5209991 AAAAAATTTTAAAAAATCTCGAACCGC-AAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
390 AAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCAAAAATCGTG-AAAATAGAAAACGAGTC
* * * * *
5210055 GTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATTAAAA
454 GTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAA
5210120 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCC-CACTACCACCCTATCGATCCACGA
519 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAC-CTACCACCCTATCGATCCACGA
* * * * * * *
5210184 TTTGCGCATCCCATCTCTCTAGTCGGCGGAGTGCCCGCCCGCCCGCTCTTTTCGTCGGTTGGCTT
583 CTTGCGCACCCCATCTCTCTAGCCGACGGAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTC
5210249 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGTTTGTGGTAGCACAT
648 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGTTTGTGGTAGCACAT
* * *
5210310 GCTGGGCACGGGCATCTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCATAGGAGCATCG-
1 GCTGGGCACGGGCATCTGCTGGTGCCGCATTTTTCTTCGTCGCGGCACCATCATAGGAGCATCGC
* *
5210374 TCGGAGAACTTGACCGGCGGCATT-GGTGTTCCGACGATCGGGGCAACCGGGGGGTGTGCGCACA
66 T-GGAGAACCTGACCGGCGGCATTAGG-GTTCCGACGATCGGGG-AACCAGGGGGTGTGCGCACA
5210438 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGAG
128 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGAG
5210503 AACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCCGTAGCCATTATAGTGT
193 AACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCCGTAGCCATTATAGTGT
5210568 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGAAT
258 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGAAT
* * * * *
5210633 GTTTTTGTGCATGCCAACAAAAATACAAGGATAATTTCTACCACGTTTGGGGTGCAAACTCCTTT
323 GTTTTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGAGGTCCAAACTCCTTC
**
5210698 CGAAAAAATTTTAAAAAATCCCGAGTCACAAAAATTTTCAAAAATCGTGAAAATAGAAAACGAGT
388 CGAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCAAAAATCGTGAAAATAGAAAACGAGT
* *
5210763 CGTCTCGCCATGAAACTTCACGTGAAGGCTTATGGGATCATTGTATGAATTTACAAACCATAAAA
453 CGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAA
* * * *
5210828 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGG
518 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * * * *
5210893 CTTGTGCACCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCACTCGTTTCGTTGGTTGGCTC
583 CTTGCGCACCCCATCTCTCTAGCCGACGGAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTC
* *
5210958 AGGCATACGGAGTTCATTTCTAGTCTAAGATCAGAC
648 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
5210994 CGAACTGAGG
Statistics
Matches: 620, Mismatches: 58, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
707 3 0.00
708 92 0.15
709 505 0.81
710 20 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (708 bp):
GCTGGGCACGGGCATCTGCTGGTGCCGCATTTTTCTTCGTCGCGGCACCATCATAGGAGCATCGC
TGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGAACCAGGGGGTGTGCGCACATGA
TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCAGCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCCGTAGCCATTATAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGAATGTT
TTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGAGGTCCAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCAAAAATCGTGAAAATAGAAAACGAGTCGT
CTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATG
GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
GCGCACCCCATCTCTCTAGCCGACGGAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTCAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGTTTGTGGTAGCACAT
Found at i:5211157 original size:26 final size:26
Alignment explanation
Indices: 5211121--5211171 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5211111 TGACTTAGGT
5211121 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
5211147 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
5211172 ATCGGGGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:5213780 original size:26 final size:26
Alignment explanation
Indices: 5213750--5213802 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5213740 GTTGACTTAG
*
5213750 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5213776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5213802 G
1 G
5213803 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5214685 original size:26 final size:26
Alignment explanation
Indices: 5214646--5214698 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5214636 GTTGACTTTG
*
5214646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
5214672 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
5214698 G
1 G
5214699 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:5215197 original size:893 final size:897
Alignment explanation
Indices: 5212890--5216623 Score: 5199
Period size: 893 Copynumber: 4.2 Consensus size: 897
5212880 GTTCACTTAG
* * ** * * ** ** **
5212890 GCATACAGAATTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTCCGATAGCACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
** * *
5212955 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * **
5213020 ACCTGACCGACGGTATTGGGGTTCCGACGATCAGGCGGCCGGGGGGGTGTGCGCACATGATGTAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * *
5213085 GATGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 AATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
5213150 -CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5213214 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5213279 GCATACCAAC-AAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
391 GCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
5213343 ACTTTAAAAAATC-CTAAACTGAAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATCT
456 AATTTAAAAAATCTC-AAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5213407 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
5213472 ATTGGCACGTAGAAATATGAAGATTTGCCTAAA-CCAACCTACCACCCTATCGATCCACGGCTTG
585 ATTGGCACACAAAAATATGAAGATTTGCCTAAACCCAA-CTACCACCCTATCGATCCACGGCTTG
* * * *
5213536 CGCATCTCGTCTCACTGGCCGGCGTAGT--------GCCCGCTCATTTTGTCGGTTGGCTTAGGC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
5213593 ATA-TGAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATTGGTAG
714 ATACAGAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTACGGCAGCAGGATCGGCAG
* * * * * * *
5213657 TACGCAGAGGGGGACCCAGCCAATCCCCGGCTTGTGCATCCCGCCCCTCTAGTCGGCTGAGCCCC
779 CACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCC
*
5213722 CGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5213776 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
5213841 CTCTGGAATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCTCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
5213906 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGGGTGTGCGCACATGATGT
*
5213971 GCAATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTAT-CCTCATCAAACCTCGAGAACTCA
194 GCAATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
5214035 CACCCCCTTAAAGAGCATTTCAGATTTTGCAGGTATGCTGCCAGCAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5214100 TGGGGACACTTTTTTCAAATGGTCACAAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
5214165 TGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTT-CGAA
388 TGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
5214228 AAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
453 AAAAA-TTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
* * * * *
5214293 TCTTACCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTATATGATTTTAGAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5214358 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACACAAAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATCGATCCACGGCT
*
5214423 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * **
5214488 GCATACAG-AGTTCATTCCCAGTTTAAGATC-GAACTGAACCGAGGGTTGCGGCAATAGGATCGG
712 GCATACAGAAGTTCATTCCCAGTCTAAGATCAGACCTG-ACCGAGGGTTACGGCAGCAGGATCGG
* * * * * * * *
5214551 CAGCATGTA-AGGGGGTGCCCAACCGATCCGCGGCTTGCGCATCTC-ACCCTTTGGCCGACTGAG
776 CAGCACGCAGAGGGGG-ACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAG
* * *
5214614 CGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5214672 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
** * *
5214737 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTAGGGCACTATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
5214802 ACCTGACCGGCGGCATTGTGGTTCTGA-AAGTC-GGGGGGCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGGCGGGGGGGTGTGCGCACATGATGTG
* *
5214865 CAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCACAAGAACTCAC
195 CAATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
5214930 ACCCCCTTAAAGAGCATCTGAGATTTTGCAGATATGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
5214995 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5215060 TGCGTGCCAACAAAAAA-AGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 TGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
5215124 AAGTTTAAAAAATTTCAAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AAATTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5215189 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
5215254 ACTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAAAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
*
5215319 GCATCCCGTCTCTCTGGCCGGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
650 GCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
5215384 ATACAG-AGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGCAGCAAGATCTGCAG
714 ATACAGAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTACGGCAGCAGGATCGGCAG
* * * * * *
5215448 CACGCAGAAGAGGACCCGACCGATCCTCGGCTTACGCATCCTGCCCCTCTAGCCGACTGAGCGCC
779 CACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCC
* *
5215513 CGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5215567 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * **
5215632 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
5215697 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTTTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * * *
5215762 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTTATCAAACCTCAAGAACTCACA
196 AATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
5215827 CCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5215891 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT-T
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5215955 GCATGGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AAAAA
391 GCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5216019 AATTTAAAAAAATCTCGAACCGT--AAA-TTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTT
456 AATTT-AAAAAATCTCAAACCGTAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5216081 TTGCCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5216146 CATTGGCACACAAAAATATGACGATTTGCCTAAACCCACCAACCACCCTATCGATCAACGGCTTG
584 CATTGGCACACAAAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTG
*** **
5216211 CGCATCCCGTCTCTCTAATCGGCGTAGTGCCCGCCATCCGGTTGCATGCTCGTTTCGTCGGTTGG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC----GCCCGCTCGTTTCGTCGGTTGG
* * *
5216276 CTTAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGA
707 CTTAGGCATACAGAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTACGGCAGCAGGA
* * * *
5216340 TTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGACT
772 TCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACT
* * *
5216405 GAGCGCTCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5216466 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACTAGAACGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* *** *
5216531 CTAGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
5216596 ACTTGACCAACGGCGTTGGGGTTACGAC
131 ACCTGACCGACGGCATTGGGGTTCCGAC
5216624 AGCACATGCT
Statistics
Matches: 2529, Mismatches: 279, Indels: 67
0.88 0.10 0.02
Matches are distributed among these distances:
886 146 0.06
887 26 0.01
888 147 0.06
889 283 0.11
890 5 0.00
892 15 0.01
893 505 0.20
894 268 0.11
895 377 0.15
896 330 0.13
897 100 0.04
898 2 0.00
899 325 0.13
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACATGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
AATTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAAAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACAGAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTACGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5215577 original size:26 final size:26
Alignment explanation
Indices: 5215541--5215593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5215531 GTTGACATAG
5215541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5215567 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5215593 G
1 G
5215594 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5216470 original size:26 final size:26
Alignment explanation
Indices: 5216440--5216492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5216430 GTTGAATTAG
* *
5216440 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5216466 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5216492 G
1 G
5216493 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:5220114 original size:26 final size:26
Alignment explanation
Indices: 5220085--5220137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5220075 GTTGACTTAG
*
5220085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5220111 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5220137 G
1 G
5220138 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5221866 original size:26 final size:26
Alignment explanation
Indices: 5221836--5221888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5221826 GTTGACTTAG
*
5221836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
5221862 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5221888 G
1 G
5221889 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:5222778 original size:26 final size:26
Alignment explanation
Indices: 5222742--5222792 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5222732 TTGACTTAGG
* * *
5222742 CATACGGAGTTCATTTCCTGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
5222768 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
5222793 GATTGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:5223674 original size:26 final size:26
Alignment explanation
Indices: 5223638--5223690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5223628 GTTGACTTAG
*
5223638 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAAACTAA
5223664 GCATACGGAGTTCATTCCCAAACTAA
1 GCATACGGAGTTCATTCCCAAACTAA
5223690 G
1 G
5223691 ATTGGATCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAAACTAA
Found at i:5223783 original size:897 final size:895
Alignment explanation
Indices: 5219422--5224400 Score: 6052
Period size: 893 Copynumber: 5.6 Consensus size: 895
5219412 NNNNNNNNNT
*
5219422 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGGTTTGCTGCC
1 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCC
* *
5219487 ACGTAGCCATTAAAGGTGTCTGAAATGGGGACACTTATCTTCAAAATGGTCACCAGAATCTTGTA
65 A-GTAGCCATTAAA-GTGTCTGAAATGGGGACACTT-TTTTC-AAATGGTCA-CAAAATCTTGTA
* * *
5219552 CACTTCCCAGTATTTGGAAACTTGAATTTTTTTGTGCATGCCAGCCCGACAACCACAAAATACCA
125 CACTT-CGAGT-TTT--TAGC-TGAATTTTTTTGTGCAT----G--C--CAA-CA-AAAATA-CA
* *
5219617 A-GATCCATGTCTACCAAGTTTGGGGGCCAAAACCACCTTCCGGAAACAATATTTTAAGAAAATC
174 AGGAT-CACGTCTACCAAGTTT-GGGGCCAAAA-CTCCTTCC-GAAA-AA-ATTTTAA-AAAAT-
* * * *
5219681 CCAAGCCAATAAAAAGTTTCAAAAATCGTGAA-ATGAAAACGAGTCGTCTTTCCATGAAACTTCA
231 CCAA-ACAGTAAAAAGTTTCGAAAATCGTGAATA-GAAAACGAGTCGTCTTGCCATGAAACTTCA
*
5219745 CGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
294 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
5219810 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCGATCTCTC
359 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTC
* * *
5219874 TGGCCGACATAGTGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
423 TGGCCGGCGTAGTGCCCG-CCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * *
5219939 ATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGAGAGG
486 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * *
5220004 GACCCGACCGATGCTCGACTTGCGTATCCCACCCCTCTAGCCGGCTGAGTGCCCGCACGCTAGTT
551 GACCCCACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
5220069 TCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTC
616 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
5220134 TAAGATCAGACCGGACTGAGGGTTGTC-GTAGCATATGCTGGGCTCGAGCATGTGCTGATGCCGC
681 TAAGATCGGACCGGACCGAGGGTTG-CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * ** *
5220198 ATTTTTCTTT-GTCGGGGCACCATCGTCGGAGCATCACTGGAGAACCTGACCGACGGGGTTGAGG
745 ATTTTTCTTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
**** * *
5220262 TTCCGACGA-TCATAGGGCCAGGGGGT-GTGAG-CACATGATGTGCGATGGGTGCTAGTACTTGG
810 TTCCGACGATTGGGGGGGCC-GGGGGTGGTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGG
5220324 CCC-TATATT-GCCCCCTATCC
874 CCCTTATATTGGCCCCCTATCC
* * *
5220344 CTCATTAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
1 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5220409 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
66 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
5220474 GAGTTTTTACCTAAATTTTTTTGTGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTG
131 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * ** *
5220539 GGGCTAAAACTCCTTTCGAAAAAATTTTACAAAATCCCAAATTGTAAAAAGTTTCAAAAATC--G
196 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAAACAGTAAAAAGTTTCGAAAATCGTG
*
5220602 --T-GAAAA--A------TAG--A--AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
260 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
5220652 TACAAGCCATAAAAATGGCATT-G---GC------ATGAAGATGTGCCTAAACCCACCAACCACC
325 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
5220707 CTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCTCC
390 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCG-----C
* * * * *
5220772 CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAATCCCAGTGTAAGATCAAACTGGACCG
449 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
** ** *
5220837 AGGGTTGCGGCAGCAGGATC-AGCAGCACATAGAGGGGGACCCGGCCGAT-CTCCAGCTTGCGCA
514 AGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCCACCGATCCT-CGGCTTGCGCA
* * * * *
5220900 TCCCTA-CCCTCTGGCCGGCTGAGTGCTCGCATGCTTGTTTCGTGGGTTGACTTAGGAATACGGA
577 TCCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
5220964 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
641 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
5221029 CGGTAGCACATGTTAGGCTTGGGCATGTGCTGGTGCCACATTTTTC-TTCACCGGGG---CA-C-
706 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCATCGGGGCACCATCG
* * * * *
5221088 T------ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAAGATCGGGTGGGCCGGGGGT
771 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGT
* *
5221147 GTGTGTG-CACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATGTTGGCCCCCTATCC
836 G-GTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* ** *
5221207 CTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTATTGGTTTGCTACCA
1 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * ** *
5221272 ATAGCCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCACAAAATCTTGTACGGTTT
66 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
5221337 GAGTTTTTGGCTGAATTGTTTTAG-GCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT
131 GAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
5221401 GGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATAGT
195 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAAACAGTAAAAAGTTTCGAAAATCGT
* * * *
5221466 GAAAAATAGAAAACGAGTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAACGGAACATTGTATG
259 G---AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5221531 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTGC
321 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5221596 CGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG--C-CCG--C-CCG
386 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCG
* * ** * * *
5221655 CTCGTTTCGTCTGTTGGCTCAGGCATACAAAGTTCATTCCCCA-TCTAAGATTAGACCAGACCAA
451 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCGGACCGA
* * * * * * *
5221719 TGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCAACCGATCCCCGGCTTGTGCATCC
515 GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCCACCGATCCTCGGCTTGCGCATCC
*
5221784 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
580 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
5221849 ATTCCCAGTCTAAGCATACGGAGTTCACTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGAT
645 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGT
* * * *
5221914 GGCACATGCTGGG-TCCGGGCATGTGCTGGTGCTGCATTTTT-TCTTCACCGGGGCACCTTCGTC
710 AGCACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTTCT-TTCATCGGGGCACCATCGTC
* * * * * * ** *
5221977 GGAGCATCGCAGGAGAACCTGACCGCCGGCATTGGGGTACTGGCGAACGGGGGGGTC-GGGG-GG
773 GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGTGG
* * **
5222040 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTCACCCCCTATCC
838 TGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5222099 CTCATCAAACCTCTAGAACTCACAACCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
1 CTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5222164 AGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
65 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5222229 CAAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
130 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
5222294 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAGAATCA
195 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-AAACAGTAAAAAGTTTCGAA-AATCG
*
5222358 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTAT
258 TG---AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
5222423 GAATTTACAATCCATAAAAATGGCATTGGGACGGAGAAATATGAAGATGTGCCTAAACCCACCTA
320 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
5222488 CCACCCTATTGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGC
385 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG-CCGC
* * *
5222553 CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCA
445 CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * * *
5222618 GACCGTGGGTTACGGCAGCAGGATCGGCAGCACGCAGAAGGGGA-TCCAGTCGATCCCCGACTTG
509 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCCA-CCGATCCTCGGCTTG
* * * *
5222682 TGCATCCCACCCCTCTGGCTGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATAC
573 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
5222747 GGAGTTCATTTCCTGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGG
638 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
5222812 TTGCAGTAGCATATGCTGGGCTCGGGCATGTGTTGGTACCGCATTTTTC-TTCGTCGGGGCACCA
703 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCATCGGGGCACCA
* * *
5222876 TCGTCGGAGCATCACCGAAGAACCTGACTGGCGGCATTGGGGTTCC-AGTGATTGGGGGGGCCGG
768 TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGGCC-G
*
5222940 GGGGTGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATC
831 GGGGTGGTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
5223005 C
895 C
* * * * * *
5223006 CTCTTCAAACCTTGAGAACTCACATCCCCTTAAAGAACATTTGATATTTTACAGGTTTGCTGTCA
1 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
5223071 GTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCACAAAATCTTTTACGCTTC
66 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * **
5223136 AAGTTTTTAGCTGAATATTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCATCTTTG
131 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
5223201 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCGAACAGTAAAAAGTTTTGAAAATCGTG
196 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAAACAGTAAAAAGTTTCGAAAATCGTG
* **
5223266 -A-AGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTGTATGAATT
260 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5223329 TACAAGCCATAAAAATGGGATTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACC
325 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * * *
5223394 CTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGTCGGCGTAGTGCCCATCCGCCCGTCCACT
390 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCG-CCGCT
* * * * *
5223459 TGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGG
453 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * **
5223524 TTGTGGTAGCAAGATCGACAGCACGCAGAGGGGGACCCCATCGATCCTCGGCTTGCGCATCCCGT
518 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCCACCGATCCTCGGCTTGCGCATCCCAC
* *
5223589 CCCTCTAGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
583 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* ** * * * *
5223654 CCCAATCTAAGCATACGGAGTTCATTCCCAAACTAAGATTGGATCC-GTCTGAGGGTTGCGGCAG
648 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAG
* * *
5223718 CACGTGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTC-TCGGGGCACCATCGTCGGAG
712 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCATCGGGGCACCATCGTCGGAG
** * *
5223782 CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGG-GGTGTG
777 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGTGGTGTG
* * *
5223846 CGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCCTAGATTGGCCCCCTATCC
842 C-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5223901 CTCATCAAACC-CTGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1 CTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
5223965 AGTAGCCATTAAAATGTCTGGAATGGAGACACTTTTTTCAAATTGTCACAAAATCTTGTACGCTT
65 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
5224030 CGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
130 CGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5224094 T-GGACCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCGAAAATCA
194 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAAACAGTAAAAAGTTTCGAAAATCG
* *
5224158 TGAAAAATAGAAAACGAGTCATCTTGCCAT-AATACTTCACGTGAAGGCTTAGGGGACCATTGTA
258 TG---AATAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5224222 TGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAATCCCATCT
319 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
5224287 ACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTTGCCGGCGTAGTG--C-CCGCCCGC
384 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGC
* * *
5224349 CTGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
449 C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5224401 CATACGGAGT
Statistics
Matches: 3533, Mismatches: 414, Indels: 247
0.84 0.10 0.06
Matches are distributed among these distances:
859 41 0.01
860 5 0.00
861 36 0.01
862 5 0.00
863 235 0.07
864 5 0.00
865 2 0.00
866 81 0.02
867 5 0.00
869 5 0.00
870 263 0.07
871 8 0.00
872 2 0.00
873 1 0.00
875 1 0.00
876 60 0.02
878 1 0.00
879 2 0.00
880 3 0.00
881 250 0.07
882 16 0.00
883 59 0.02
884 1 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 5 0.00
889 3 0.00
890 5 0.00
891 3 0.00
892 88 0.02
893 490 0.14
894 68 0.02
895 284 0.08
896 13 0.00
897 338 0.10
898 18 0.01
899 167 0.05
900 17 0.00
901 170 0.05
902 2 0.00
903 4 0.00
904 66 0.02
905 254 0.07
906 210 0.06
907 87 0.02
911 16 0.00
912 2 0.00
914 3 0.00
915 4 0.00
916 16 0.00
917 9 0.00
918 4 0.00
919 20 0.01
920 12 0.00
921 12 0.00
922 49 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAAACAGTAAAAAGTTTCGAAAATCGTGA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCCACCGATCCTCGGCTTGCGCATCCCACCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCATCGGGGCACCATCGTCGGAGCATC
ACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGTGGTGTGCCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
Found at i:5224404 original size:26 final size:26
Alignment explanation
Indices: 5224374--5224426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5224364 GTTGGCTTAG
5224374 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
5224400 GCATACGGAGTTCATTCTCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5224426 G
1 G
5224427 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5224971 original size:26 final size:26
Alignment explanation
Indices: 5224941--5224993 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5224931 GTTGACTTAG
5224941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5224967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5224993 G
1 G
5224994 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5225210 original size:571 final size:560
Alignment explanation
Indices: 5224034--5225149 Score: 1559
Period size: 571 Copynumber: 2.0 Consensus size: 560
5224024 ACGCTTCGAG
** *
5224034 TTTTTAGCTGAAGTTTTT-TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGA
1 TTTTTAGCTGAA-TTTTTCCGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGA
* *
5224098 CCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCGAAAATCATGAAA
65 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATGAAA
* *
5224163 AATAGAAAACGAGTCATCTTGCCATAATACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCATCTTGCCATAATACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATT
* * * * *
5224228 TACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAATCCCATCTACCACC
195 TACAACCCATAAAAATGACATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAACAACCACC
*
5224293 CTATCGATCCACGGCTTGCGAATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGCCTGCTCGTT
260 CTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTAG-G-CCGCCCGCCTGCTCGTT
* * *
5224358 TCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCGGTC
323 TCATCAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
*
5224423 TAAGATCGGACCGAATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCAAGTGCTGGTGCCGCA
388 TAAGATCGGACCGAATCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCAAGTGCTGGTGCCGCA
* *
5224488 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGATCGGCGACATTGGGGTT
453 TTTTTCTTCGCCGGGGCACCAT--CC-G-G----ATCGGAGAACCTGATCGGCGACATTAGGGTT
* ** * *
5224553 CTGACGATCGGGGGGCCTGGGGGGGTGTGCGCACATGATGTACACTTTGAC
510 CCGACGATCGGGGGGCCCAGGGGGGAGTGCGCACATGATGTACACTGTGAC
** * **
5224604 TTTTTAGCTGAATTTTTTTGTGCATGCCATCAAAAATACAGGGATCACGTCTACCAAGTTTGGGG
1 TTTTTAGCTGAATTTTTCCGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGAC
* ** * *
5224669 CAAAAACTCCTTCCGAAAAAATTTTAATAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAA
66 CAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATGAAA
* * *
5224734 AATAGAAAACGAGTCGTGTTGCCATGAA-ACTTCAGGTGAAGGCTTAAGGGACAATTGTATGAAT
130 AATAGAAAACGAGTCATCTTGCCAT-AATACTTCACGTGAAGGCTTAAGGGACAATTGTATGAAT
*
5224798 TTACAACCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACAACCAC
194 TTACAACCCATAAAAATGACATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAACAACCAC
* * *
5224863 CCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTA-G-CGCCCGCAC-GCTCGTT
259 CCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTAGGCCGCCCGC-CTGCTCGTT
** *
5224925 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
323 TCATCAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
5224990 TAAGATCGGACC-AACTCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGC
388 TAAGATCGGACCGAA-TCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCAAGTGCTGGTGCCGC
* * * *
5225054 ATTTTTTTTTGCCGGGGCACCAT-C-G-TCGGAGAACCTGA-CTGGCGGCATTAGGGTTCCGGCG
452 ATTTTTCTTCGCCGGGGCACCATCCGGATCGGAGAACCTGATC-GGCGACATTAGGGTTCCGACG
5225115 ATCGGGGGGCCCAGGGGGGAGTGCGCACATGATGT
516 ATCGGGGGGCCCAGGGGGGAGTGCGCACATGATGT
5225150 GTGATGGGTG
Statistics
Matches: 493, Mismatches: 47, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
555 1 0.00
556 61 0.12
561 1 0.00
564 1 0.00
566 2 0.00
567 151 0.31
568 1 0.00
569 6 0.01
570 60 0.12
571 207 0.42
572 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (560 bp):
TTTTTAGCTGAATTTTTCCGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGAC
CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATGAAAA
ATAGAAAACGAGTCATCTTGCCATAATACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTT
ACAACCCATAAAAATGACATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAACAACCACCC
TATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTAGGCCGCCCGCCTGCTCGTTTCA
TCAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGAATCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCAAGTGCTGGTGCCGCATTT
TTCTTCGCCGGGGCACCATCCGGATCGGAGAACCTGATCGGCGACATTAGGGTTCCGACGATCGG
GGGGCCCAGGGGGGAGTGCGCACATGATGTACACTGTGAC
Found at i:5226418 original size:26 final size:26
Alignment explanation
Indices: 5226368--5226420 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5226358 GTTGGCTTAG
**
5226368 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5226394 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5226420 G
1 G
5226421 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5227296 original size:26 final size:26
Alignment explanation
Indices: 5227260--5227311 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5227250 GTTGACTTAG
*
5227260 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
5227286 GCATACAGAGTTCGTTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
5227312 CATCGGTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:5227891 original size:893 final size:892
Alignment explanation
Indices: 5226114--5230616 Score: 5473
Period size: 893 Copynumber: 5.0 Consensus size: 892
5226104 CAAACCTAGA
* * * *
5226114 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTC-TCGGCCGACGTAGTGCCTGCCCGCCC
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * * * *
5226178 ACCCACCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTGCATTCCTAGTCAAATATTAGAT
66 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGAC
* * * *** * * * *
5226243 CGGACCAAGGGTTACAATAGTAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTC
131 CGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCCCGGCTT
* ** * *
5226308 GCACATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
196 GCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
5226373 CGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGACG
261 CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGG-CCAGACCGAGG
* * * * ** * *
5226438 GTTACGACAGCACCTGCTGGGCTTGGGCATGTGTTGGTGGAGCATTTTTCTTTGTCAGGGCACCA
325 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* *
5226503 --TC---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGG
390 TCTCGGAGCATCGCCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGAT--------CGGGGG
* *
5226558 GGTGTGCGCACCTGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCA
447 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
5226623 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAG
512 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
5226688 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
576 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5226753 TTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
641 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
5226818 CAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTTGAAAATCGTGAAAA
706 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
5226883 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
771 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
5226948 ACAAGCCGTAAAAATGGCATTGGCACATAAAAATATGAAGATGCGCCTAAACCCACC
836 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5227005 TACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGGCATAGTGCCCGCCCACCC
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCC
* *
5227070 GCCCGCCTGCTCGTTTCGTCGGTTGGCATAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGAC
66 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGAC
* * *
5227135 CGGACCGACGGTTGCGGCAGTAGGATCAGCAACACGTAGAGGGGGACCTGATCGATCCCCGACTT
131 CGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCCCGGCTT
* * *
5227200 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
196 GCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
5227265 CAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCGTT-CCAAGTCTAACATCGGTTCAGACCGAG
261 CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAA-TCTAAGATCGG-CCAGACCGAG
* *
5227329 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTACTTCGTCGGGGCACC
324 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
5227394 ATCTCCGGAGCATCGCCGGAGAACCTGATCGACGGCACTGGGGTTCCGCCGATCGGGGGGGTGCG
389 ATCT-CGGAGCATCGCCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGATCGGGGGGGTGTG
5227459 CGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAAC
453 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
5227523 CTCGATAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
518 CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
5227588 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
583 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
5227653 TGAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
648 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
5227718 CCTTCCAAAAAAATTTTAAGAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
713 CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
5227783 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTAAAAGCC
778 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
5227848 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
843 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
5227898 TACCATCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCACCC
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * **
5227963 GCCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATA-TAGTGTTCATTGCC-AGTCTAAGATGGG
66 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATT-CCTAGTCTAAGATTAG
* * * * * * * *
5228026 ACCGGACCAACGGTTGCGGCTGTAGAATTGGTAGCACATAGAGGGGGA-CTCGGTTGATCCCCGG
129 ACCGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCT-GATCGATCCCCGG
* * * * * *
5228090 CATGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGC
193 CTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
5228155 ATACGGAGTTCATTCCCAATGTAAGCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACCG
258 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGG-CCAGACCG
*
5228220 AGGGTTGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTATCACAT
322 AGGGTTG----C---G---A----CAG-C----A-C--A--TG--C------TG-GG-----C-T
* * * *
5228285 GCTGGGC-TCGGGCATATGCTGGTGCCGCATTTTTCTTAGTCGGGGTACCATCGCCGGAGCATCG
348 -C-GGGCAT--GT-----GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCG
** * ** *
5228349 CCGGAGAACCTGACCGGTGGCACTAGGGTTCCGGTGATCGGAGGGGTGTGCGCACATGATGTGCG
403 CCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGATCGGGGGGGTGTGCGCACATGATGTGCG
*
5228414 ATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
468 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
5228479 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
533 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
5228544 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
598 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
***
5228609 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCTACCAAAACTCCTTCCAAAAAAATT
663 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
*
5228674 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
728 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
5228739 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
793 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
5228804 GCACGTAGAAATATGAAGATGTGCCTAAACCCACC
858 GCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5228839 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCTGCGTGGTGCCCGCGCGTCC
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT------GC--CC
* * *
5228904 GCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAATTCATTCCTAGTCTAA
58 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAA
* * * * * *
5228969 GATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGAAACC-GGTCGAT
123 GATTAGACCGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGG-GACCTGATCGAT
* * * ** * *
5229033 TCCTGGCTTGCATATCCCACCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGAC
187 CCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* *
5229098 TTAGGCATAAGCAGTTCATTCCCAG--T---C-T--A-AG----------ATC--AGA----CCA
252 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGCCA
* *
5229138 GACCGAGGGTTG-G-CAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTAGTCG
317 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ** *
5229201 GGGCACCATCACCAGAGCATCGCCAGAGAACCTGACCGGCGGCACTGGGGTTACGGTGATCGGAG
382 GGGCACCATC-TCGGAGCATCGCCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGATCGGGG
* *
5229266 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTC
446 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
5229331 ATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTA
511 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
5229396 G-CATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
575 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
5229460 TTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGC
640 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * ** *
5229525 CCAAAACTCCTTTCAAAAATATTTTAAAAAATCCCGAATCGCAAAAAGTTTTGAAAATCATGAAA
705 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAA
5229590 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
770 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
5229655 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAGCCAACC
835 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
5229713 TACCACCCTATCGATCCACGGCTTGCGGATCCTGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCT
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCC
*
5229778 GCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC------T--A-
66 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGAC
**
5229833 ---A--GA---TT------G-A-GA---GCAG-A--TAGAGGGGGACCCTG-TCGATCCCCGATT
131 CGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGA-CCTGATCGATCCCCGGCT
* * * * *
5229875 TGCATAT-CTCGCCCCTCTGGCAGGCTGAGCACCCTCACGCTCGTTTTGTGGGTTAACTTAGGCA
195 TGCACATCCT-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ** *
5229939 TACGGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAATCTAAGATCAGACTGGATCG
259 TACGGAGTTCATTCCCAGTCTAAGCATACA-GAGTTCATTCCCAATCTAAGATC-GGCCAGACCG
*
5230003 AGGGTT-CTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
322 AGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** ** * *
5230067 ACCATTGTCGGAGCATCACCGGAGAACCTGACAAACGATATTGGGGTTCCGGCGATCGAGGGGGC
386 ACCA-TCTCGGAGCATCGCCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGATC------G-
*
5230132 TGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
443 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
5230197 CCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
507 CCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5230262 AGTAGCCATTAAAGTGTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
571 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * ** *
5230327 CGAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCGTGTCTA-TAAGTTT
636 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
5230391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTCAAAAAGTTTCAAAGATCAT
701 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
* * * *
5230456 GAAAAATAGAAAACCAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTACG
766 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5230521 AATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACC
831 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
5230583 TGCCACCCTAGCGATCCCCGGCTTGGGCATCCCG
1 TACCACCCTATCGATCCACGGCTTGCGCATCCCG
5230617 CCCCTCTAGC
Statistics
Matches: 3165, Mismatches: 323, Indels: 269
0.84 0.09 0.07
Matches are distributed among these distances:
833 2 0.00
834 88 0.03
835 1 0.00
836 2 0.00
837 4 0.00
839 1 0.00
840 3 0.00
841 2 0.00
842 1 0.00
843 2 0.00
848 2 0.00
851 2 0.00
853 4 0.00
855 3 0.00
857 1 0.00
860 11 0.00
861 1 0.00
862 94 0.03
863 1 0.00
865 41 0.01
866 17 0.01
868 3 0.00
869 2 0.00
870 332 0.10
871 107 0.03
874 506 0.16
875 41 0.01
879 1 0.00
880 4 0.00
881 2 0.00
882 1 0.00
883 1 0.00
888 2 0.00
889 2 0.00
891 40 0.01
892 296 0.09
893 616 0.19
894 52 0.02
895 43 0.01
897 2 0.00
898 1 0.00
899 1 0.00
900 2 0.00
902 1 0.00
903 35 0.01
906 1 0.00
907 6 0.00
908 1 0.00
912 1 0.00
913 1 0.00
915 2 0.00
917 1 0.00
919 1 0.00
923 15 0.00
925 2 0.00
926 2 0.00
928 3 0.00
930 2 0.00
931 1 0.00
932 1 0.00
933 2 0.00
934 4 0.00
935 1 0.00
940 115 0.04
941 439 0.14
943 1 0.00
944 1 0.00
947 3 0.00
948 2 0.00
949 178 0.06
950 2 0.00
951 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCC
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGAC
CGGACCGACGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCCCGGCTT
GCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGCCAGACCGAGGG
TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
CTCGGAGCATCGCCGGAGAACCTGACCGACGGCACTGGGGTTCCGCCGATCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
Found at i:5228189 original size:26 final size:26
Alignment explanation
Indices: 5228153--5228205 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5228143 GTTGACTTAG
5228153 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATGTAA
5228179 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATGTAA
5228205 G
1 G
5228206 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATGTAA
Found at i:5228253 original size:47 final size:47
Alignment explanation
Indices: 5228183--5228274 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
5228173 ATGTAAGCAT
* *
5228183 ACGGAGTTCATTCCCAATGTAAGATCGGACCAGACCGAGGGTTGCAA
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAA
*
5228230 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC
5228275 GGTATCACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (47 bp):
ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAA
Found at i:5229972 original size:26 final size:26
Alignment explanation
Indices: 5229936--5229988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5229926 GTTAACTTAG
* *
5229936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5229962 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5229988 G
1 G
5229989 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:5230442 original size:870 final size:871
Alignment explanation
Indices: 5228232--5230616 Score: 3093
Period size: 874 Copynumber: 2.7 Consensus size: 871
5228222 GGTTGCAAAC
* * *
5228232 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GGTATCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAATCTAAGATCAGA-C-GA-CGAGGGTT-CTGGCAGCACATGCTGGGCTCGG
* *
5228296 GCATATGCTGGTGCCGCATTTTTCTTAGTCGGGGTACCATCGCCGGAGCATCGCCGGAGAACCTG
62 GCATGTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
5228361 ACCGGTGGCACTAGGGTTCCGGTGATC----GG-AGGGGTGTGCGCACATGATGTGCGATTGGTG
127 ACCGGCGGCACTGGGGTTCCGGTGATCGGGGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTG
5228421 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
*
5228486 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
5228551 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
5228616 CAAAAATACAAGGATCACGTCTACCAAGTTTGCTACCAAAACTCCTTCCAAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTA-TAAGTTTGGGACCAAAACTCCTTCC-AAAAAATTTTAAAAA
* * *
5228681 ATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
450 ATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
5228746 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
515 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCA
*
5228811 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
580 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * *
5228876 CTTTGGCCTGCGTGGTGCCCGCGCGTCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTT
645 CCCTGGCCTGCGTAGT-----CGCG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
*
5228941 AGGCATACAAAATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
704 AGGCATACAAAATTCATTCCTAGTC----AT-A-A-C--A-CGA--GTTGCAGCAGCAGGAT---
* * * *
5229006 CAGCACGCAGAGGGGAAACCGGTCGATTCCTGGCTTGCATATCCCACCCCTCTGGCCGACTGAGC
754 ---CACGCAGAGGGGAAACCGGTCGATCCCCGACTTGCATATCCCACCCCTCTGGCAGACTGAGC
* *
5229071 TCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGCAGTTCATTCCCAGTCTA
816 ACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGCAGTTCATTCCCAGTCTA
* *
5229127 --AG----------ATC--AGACCAGAC--CGAGGG-T-TGGCAGCATATGCTGGGCTCGGGCAT
1 GGAGTTCATTCCCAATCTAAGATCAGACGACGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCAT
* * *
5229174 GTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCACCAGAGCATCGCCAGAGAACCTGACCG
66 GTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
*
5229239 GCGGCACTGGGGTTACGGTGATCGGAGGGGT----GTGT--GCACATGATGTGCGATGGGTGCTG
131 GCGGCACTGGGGTTCCGGTGATCGG-GGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
5229298 GTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCATAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAG
* *
5229363 AGCATTTGCGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTATT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
5229427 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
5229492 AAAATACAAGGATCACGTCTATCAAGTTTGGGCCCAAAACTCCTTTCAAAAATATTTTAAAAAAT
389 AAAATACAAGGATCACGTCTAT-AAGTTTGGGACCAAAACTCCTTCCAAAAA-ATTTTAAAAAAT
* * *
5229557 CCCGAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
452 CCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
5229622 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGA
* * * * *
5229687 AATATGAAGATATGCCTAAGCCAACCTACCACCCTATCGATCCACGGCTTGCGGATCCTGTCTCC
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCC
*
5229752 CTGGCC-GACGTAGT-GC-CCGCCCGCCTGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATA
647 CTGGCCTG-CGTAGTCGCGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * *
5229813 CGGAGTTCATTCCTAGTC-T-A-A-GA-TTG-AG-AGCA-GAT-A-G-AG-GGGG-ACCCTGTCG
711 CAAAATTCATTCCTAGTCATAACACGAGTTGCAGCAGCAGGATCACGCAGAGGGGAAACCGGTCG
* * * * * *
5229865 ATCCCCGATTTGCATATCTCGCCCCTCTGGCAGGCTGAGCACCCTCACGCTCGTTTTGTGGGTTA
776 ATCCCCGACTTGCATATCCCACCCCTCTGGCAGACTGAGCACCCGCACGCTCGTTTCGTGGGTTA
* *
5229930 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAA
841 ACTTAGGCATAAGCAGTTCATTCCCAG--T---C-T-A
5229968 GGAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTCTGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAATCTAAGATCAGAC--GA-CGAGGGTTCTGGCAGCACATGCTGGGCTCGGG
* * * *
5230033 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGA
63 CATGTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
*** ** * * *
5230098 CAAACGATATTGGGGTTCCGGCGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGG
128 CCGGCGGCACTGGGGTTCCGGTGATCG-GGGGG-T-GGGGGTGTGCGCACATGATGTGCGATGGG
5230163 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCT
190 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCT
* * *
5230228 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGTGACA
254 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
5230293 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGC
319 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** *
5230358 CAACAAAAATACAAGGATCGTGTCTATAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
384 CAACAAAAATACAAGGATCACGTCTATAAGTTTGGGACCAAAACTCCTTCC-AAAAAATTTTAAA
* * * * *
5230423 AAATCCCAAACCTCAAAAAGTTTCAAAGATCATGAAAAATAGAAAACCAGTTGTCTTGCCATGAA
448 AAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5230488 ACTTCACGTGAAGGCTTAAGGGACCATTCTACGAATTTACAAGCCATAAAAATGGCATTGGCAAG
513 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
* * * *
5230553 CAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTAGCGATCCCCGGCTTGGGCATCCCG
578 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
5230617 CCCCTCTAGC
Statistics
Matches: 1320, Mismatches: 119, Indels: 127
0.84 0.08 0.08
Matches are distributed among these distances:
834 85 0.06
835 4 0.00
836 3 0.00
837 1 0.00
838 1 0.00
839 1 0.00
840 1 0.00
841 1 0.00
843 2 0.00
845 3 0.00
846 4 0.00
847 1 0.00
848 3 0.00
851 2 0.00
853 4 0.00
855 8 0.01
857 1 0.00
860 7 0.01
861 1 0.00
862 103 0.08
863 2 0.00
865 41 0.03
866 17 0.01
868 6 0.00
869 2 0.00
870 319 0.24
871 113 0.09
873 6 0.00
874 512 0.39
875 42 0.03
876 10 0.01
879 2 0.00
880 1 0.00
881 7 0.01
883 2 0.00
893 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
GGAGTTCATTCCCAATCTAAGATCAGACGACGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
GCGGCACTGGGGTTCCGGTGATCGGGGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTATAAGTTTGGGACCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCA
AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGG
CCTGCGTAGTCGCGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAA
TTCATTCCTAGTCATAACACGAGTTGCAGCAGCAGGATCACGCAGAGGGGAAACCGGTCGATCCC
CGACTTGCATATCCCACCCCTCTGGCAGACTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTA
GGCATAAGCAGTTCATTCCCAGTCTA
Found at i:5230726 original size:26 final size:26
Alignment explanation
Indices: 5230667--5230729 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
5230657 GTTGACTTAG
*
5230667 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5230693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5230719 GCATACGGAGT
1 GCATACGGAGT
5230730 GGACCGAGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5231300 original size:733 final size:731
Alignment explanation
Indices: 5229923--5231363 Score: 2237
Period size: 733 Copynumber: 2.0 Consensus size: 731
5229913 GCTCGTTTTG
*
5229923 TGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAA
1 TGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAA
* *
5229988 GATCAGACTGGATCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
66 GATCAGACTGGACCGAGGGTTCTGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCGCATTT
* ** *
5230053 TTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGACAAACGATATTGGGGTTCCG
131 TTCTTCGTCGAGGCACCATTCACGGAGCATCACCGGAGAACCTGACAAACGACATTGGGGTTCCG
* * * *
5230118 GCGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
196 ACGAGCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
5230183 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTT
261 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTCAAAGAGCATTTGAGATTTT
* * *
5230248 ACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGTGACACTTTTTTCAAATGGTCACAA
326 ACACGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
5230313 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCG
391 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
5230378 TGTCTATAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTCAAAAAG
456 TGTCTATAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTATAAAAAATCCCAAACCTCAAAAAG
* * *
5230443 TTTCAAAGATCATGAAAAATAGAAAACCAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
521 TTTCAAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAG
**
5230508 GGACCATTCTACGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCC
586 GGACCATTCTACGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATACGCC
* * *
5230573 TAAACCCACCTGCCACCCTAGCGATCCCCGGCTTGGGCATCCCGCCCCTCTAGCCGGCTGAGGGG
651 TAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGGGG
5230638 CCGCGCACACGTTTCA
716 CCGCGCACACGTTTCA
* * *
5230654 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAA
* * * *
5230719 GCATACGGAGTGGACCGAGGGTTGTGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCTCAT
66 G-AT-CAGACTGGACCGAGGGTTCTGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCGCAT
** ** * *
5230784 TTTTCTTCGTCGAGGCACCA-TCACGGGAGCATCGTCGGAGAACCTGATC-GGCGGCATTGGTGT
129 TTTTCTTCGTCGAGGCACCATTCAC-GGAGCATCACCGGAGAACCTGA-CAAACGACATTGGGGT
5230847 TCCGACGAGCG-GGGGGCC-GGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
192 TCCGACGAGCGAGGGGGCCGGGGGGT-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
5230910 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACAC-CCTCAAATAGCATTTGA
256 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CTCCTCAAAGAGCATTTGA
*
5230974 GATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
320 GATTTTACACGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
5231039 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
385 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
5231104 GGATCATGTCTATCAAGTTTGGGATCAAAAATCCTTCTGAAAAAATTATAAAAAATCCCGAACCA
450 GGATCATGTCTAT-AAGTTTGGGACCAAAAATCCTTCCGAAAAAATTATAAAAAATCCCAAACC-
* *
5231169 T-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAA
513 TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATAAAACTTCACGTGAA
* * * * * *
5231233 GGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCTTTGGCATGTAGAAATATGAA
578 GGCTTAAGGGACCATTCTACGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAA
* * * *
5231298 GATACGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGG
643 GATACGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCGCCCCTCTAGCCGG
5231363 C
708 C
5231364 GTAGTGCCCG
Statistics
Matches: 643, Mismatches: 59, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
731 68 0.11
732 243 0.38
733 330 0.51
734 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (731 bp):
TGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAA
GATCAGACTGGACCGAGGGTTCTGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGAGGCACCATTCACGGAGCATCACCGGAGAACCTGACAAACGACATTGGGGTTCCG
ACGAGCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTCAAAGAGCATTTGAGATTTT
ACACGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
TGTCTATAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTATAAAAAATCCCAAACCTCAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAG
GGACCATTCTACGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATACGCC
TAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGGGG
CCGCGCACACGTTTCA
Found at i:5233321 original size:26 final size:26
Alignment explanation
Indices: 5233291--5233343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5233281 GCTGACTTAG
5233291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5233317 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5233343 G
1 G
5233344 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5234224 original size:26 final size:26
Alignment explanation
Indices: 5234194--5234246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5234184 GCTGACTTAG
5234194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5234220 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5234246 G
1 G
5234247 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5234336 original size:903 final size:898
Alignment explanation
Indices: 5232413--5257795 Score: 15141
Period size: 903 Copynumber: 27.8 Consensus size: 898
5232403 GTTAGCTTAG
* * * * **
5232413 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTGGACCGAGGGTTACGGCAGCATATGCCA
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGACTGGACCGAGGGTTACGGCAGCACATGCTG
* * * *
5232478 GGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCACGGGAGCATCGTCAGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGA
* * ** * * *
5232543 GAACCTGACCGGTGGCATTAGGGTTCCGATGAGCGGGGGGGC-CGGGGGGTGTGCGCCCATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATG
5232607 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
5232672 ACACACCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5232737 GTGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTTAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * **
5232802 TGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGGAAAAACTCCTTCCAAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
5232867 AAATTTTTAAAAATCCTGAACCACAGAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5232932 TTACCATGAAACTTCACATGAAGGCTTAAGGCG-CCATTGTATGAATTTACAAGCCATAAAAACG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5232996 GCATTGGCATGTATAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGCTTG
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTG
*
5233061 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCATTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C--TCGTTTCATCGGTTG
* * * * *
5233126 GCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCACACCGAACCGAGGGTTGTGACAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGA
* * * * *
5233191 TCAGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGTCCTTCTGGCCGACA
773 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
5233256 GAGCGCCCGCACACTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5233317 GCATATGGAGTTCATTCCCATTCTAAGATCAAACTGGACCGAGGGTTGCAGTAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
5233381 CTCGGGCATGTGCTGGAGCCACATTTTTCTTTGTCGGGGCACCATCGCTGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
*
5233446 AGCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCTGGGGGGCGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCTGGGGGG-GTGTGCGCACATGATGT
*
5233511 GCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * * *
5233576 CACACCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTTAAG
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5233641 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTAGCTTAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* * **
5233706 GTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGGAAAAACTCCTTCCAAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
5233771 AATTTTTACAAATCCTGAACCACAGAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5233836 TACCATGAAACTTCACATGAAGGCTTAAGGCG-CCATTGTATGAATTTACAAGCCATAAAAACGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5233900 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGCTTGC
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGC
* *
5233965 GCATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCATTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C--TCGTTTCATCGGTTGG
* * * * *
5234030 CTTAGGCATACAGAGTTCATTCCCAGTCTAACATCACACCGAACCGAGGGTTGTGACAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGAT
* * ** *
5234095 CAGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCTTTCTGGCCGACAG
774 CAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* *
5234160 AGCGCCCGCACACTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5234220 GCATATGGAGTTCATTCCCATTCTAAGATCAAACTGGACCGAGGGTTGCAGTAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * **
5234284 CTCGGGCATGTGCTGGAGCCACATTTTTCTTTGTCAGGGCACCATCGCTGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
*
5234349 AGCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCTGGGGGGCGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCTGGGGGG-GTGTGCGCACATGATGT
* * * *
5234414 GCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAATTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
5234479 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5234544 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TTGATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT-AATTTTTT
* * * ** *
5234608 TATGGAAGCCAACAAAAAAACAAGGATCACGTCTAAGAAGTTTGGGACCAAAACTCCTTCCAAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * * *
5234673 AAATTTCAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCGTC
453 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5234738 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** *
5234803 CATTGGCACATAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTG
* * * *
5234868 CGCATCCCGTCTCTCTGGCCGGCGT-G-G--TGCCCGCCCACCCGCTTGTTTCATCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * * *
5234929 AGGCATACGGAGTTCATTCCTAGTATAAGATCAGATCGGACCAAGGTTTGCGGCAGCAAGATC-G
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCAG
* * ** * *
5234993 ACAGCATGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-AGTTGA
777 -CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGA
*
5235057 GCACCCGCACACTCGTTTCGTGGGTTGACTTAGGGCATACGGAG-TCATTCCCAGTCTAA
840 GCGCCCGCACACTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5235116 GGCCAGCACGG-GTTCATTCCCAGGTCTAAGATAAGA-TCAGATCAAGGGTTGCGGTAGCACATG
1 -G-CA-TACGGAGTTCATTCCCA-GTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATG
* * * ** ** *
5235179 CTAGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATC-ATCGGAGCATCGT
61 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGT
** * * * * *
5235243 TGGAGAACCTGACCGGCGGCATTAGGGTTCAGGAGATTGGGGGGCCGGGGGGGAGGTGTGCGCAC
125 CAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-C-TGGGGG-GGTGTGCGCAC
5235308 ATGATGTGCGATGGGTGCTGGTACTTGGGCCCTTATATTGGCCCCCTATCCGCTCATCAAACCTC
187 ATGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTC
* * *
5235373 AGGAGACTTAC-CACCCCTTAAAAAGCATTTGAGATTTTACAGGGTTTAGCTGCCAGTAGCCATT
250 AAGA-ACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACA-GGTTT-GCTGCCAGTAGCCATT
*
5235437 AAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
5235502 GC-TGATTTTTTTATGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
376 GCTTAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * ** *
5235566 CTCCTTCCGAAAAAATTTTAAGAAATCCCGAA-CAGTAAAAAGTTTTGAAAACCGTGAAAAATAG
441 CTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
5235630 AAAACGAGTCGTCTTGGCTTGAAACTTCACGTGAAGGCTTAATGGGACCATTGTATGAACTTACA
505 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACA
* *
5235695 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
569 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * **
5235760 CGTTCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGTCCGCTCGCT
634 CGATCCA-CGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-C-CGCT
* * * ** *
5235825 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATTAGACTAAACTGAGGG
694 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGG
* * * * ** * * *
5235890 CTGCGGCAGTAGGATCGGTAGCATACAGAAGGGGACTCGACCGATCCCCAGCTTGCGCATCCCGC
759 TTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * *
5235955 CCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGACTTCATT
824 CCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
5236020 CCCAGTCTAA
889 CCCAGTCTAA
* * **
5236030 GCATACGGAGTTCATTCCCTA-TCTAAGATCGGACCGGGTCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
5236094 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACAATCG-TCGGAGTATCGTCAGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGA
* * * *
5236158 GAACCTGACCAGCGGCATTGGGGTTCTGGAGATTGGGGGGCT--GGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGT
* *
5236221 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
5236286 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5236351 TGGGGACACTTTTTTCAAATAGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
** * * *
5236416 GTGCATTCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * * *
5236480 AATTTCAAAAAATCCCGAACCGCCAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5236545 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGCCAAAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5236610 ATTGGCACT-CAAAAATAAGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTT
584 ATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTG
* * * * *
5236674 CGCATCCCGTCTCTCTGGCCGACGT-G-G--TGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * **
5236735 AGGCATACAGAGTTCATTCCCAGTATAAGATCAGACC-AGACCGAAGGTTAAGGCAGCAGGATC-
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCA
* ** * * * * **
5236798 GACAGCACTCAGAGGGGGACCCGGTCGATCCCCGACTTCCGTATCCCACCCCTCTGGCCGGTTGA
776 G-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * *
5236863 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
840 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5236922 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** *
5236987 CTCGGGCATGTGCTGGGGCCACATTTTTCTTCGTCGAGGCACCATC-CACGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC-TGGAGCATCGTCAGAG
* *** * *
5237051 AACTTGACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCT-GGGGGGTGTGTGCACGTGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGT
* * *
5237115 GCGATGGGTACTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
5237180 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5237245 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* *
5237309 GTGCAAGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
5237374 AATTTTAAAAAAT-CTCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGT
454 AATTTTAAAAAATCCT-GAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * * *
5237437 CTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAACTTAAAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5237502 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* * * * * *
5237567 GCGCATCACGTCTCTCTGGTCGGCGT-G-G--TGCCCACCCGTCCGCTCGTTTCATCAGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
5237628 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TGAAGGGTTGCAGCTGCAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCG-AGGGTTGCGGCAGCAGGATC
* * * * *
5237692 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGTCGACTGA
775 AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * * * **
5237757 GCTCTCAG-ACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATT-CC---CT--
840 GCGC-CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5237810 --AT-C-----TCA----GA-TC--AGACCAGACT-----GAGGGTTACGGTAGAACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
5237855 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGACCATCGTC-GAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAG-AG
* * * * *
5237919 AACCTGACCAGCGGCATTAGGGTTCCGACGATCCGGGGAGC-GGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGAT-CGGGGGGCTGGGGGGGTGTGCGCACATGATGT
* * *
5237983 GTGGTGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
5238048 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5238113 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* *
5238178 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAGTCCCTT-CAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAA
** ** * *
5238242 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAATTTTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
5238306 CTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
5238371 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGTGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGCTT
* * * * ** *
5238436 GCGCTTCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCGCCCTCCCGCTCATTTTGTCTGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCATCGGTT
* * * * * * *
5238501 GGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGATCGAATCGAGGGTTACGGTAGCAT
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACCGAGGGTTGCGGCAGCAG
* * * *
5238565 GATCAGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGTTTGTGCATCCCGCCCCTCTGGCCGA
771 GATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
5238630 CTGAGCGCCCGCA-AGCTCCTTTCGTGGGTCGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACA-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5238693 GCATACGGAG--GA----CA---T----T-----T----CGAGGGTTACGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
5238736 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCG-CCGAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAG-A
* * * ** ** * *
5238799 GAACCTGACCGACAGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATAATT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATG
* * *
5238864 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
5238929 ACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5238994 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * *
5239059 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
*** * * * *
5239124 AAATTTTAAAAAATCCTGAACTGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
5239189 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5239254 CATTCGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCATATCGATCCACGGCTT
583 CATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* * *
5239318 GCGCAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--CACT--TTTCGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * ** *** * *
5239379 TAGGCATACGGAG-TCTATTCCTATTCTAAGAT-AGGACTTAAAAAAGGGTTGTGGC-CCAGGAT
711 TAGGCATACGGAGTTC-ATTCCCAGTCTAAGATCA-GACCGAACCGAGGGTTGCGGCAGCAGGAT
* * ** * *
5239441 CACCAGCACGTAGAGGGGGACCC-AGTTGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTACT
774 CAGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * * *
5239505 GAGCGCCCGGACGCTCATTTCGTGGGTTGACTTGGGCATACGGAGTTCAATCCCAGTCTAA
838 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
5239566 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGGATTGAGGGTTGCGACAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
5239630 GCTCGGGCATGTGCTGGTGTCACAATTTTCTTCGTCGGGGCACCATC-ATCAGAGCTTCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGA
* * *
5239694 GAACCTGACCGGCGGGATTGGGGTTCCGGCGTTCGGGGGTGC-CGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG-GCTGGGGGGGTGTGCGCACATGATG
* * * * **
5239758 TGTGAAGAGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
5239823 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5239888 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * ** * * *
5239953 TGTGCACAG-CAAAAAAAATACAAGGATCACATCTACCAAGTTCAGGGCCAGAACTCCTTTCGAA
388 TGTGCA-AGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** * * *
5240017 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGACGT
452 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
** *
5240082 CTTAACATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5240147 GCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCATGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTT
*
5240212 GCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCTCGTTTCGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * ** * * *
5240269 TAGGCATAGGGAGTTGATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCA-CATGC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGAT-C
* * * * * * * **** * * * * ** *
5240333 TG-GGCTCGGGCATGTGCTGGTGTCGC-ATTTTTCTTCATCGGGTTAC-CATCATCGGAGCATC-
775 AGCAGCAC--GCA-GAG--GGGGACCCGACCGATC--C-CCGGCTTGCGCATC--CCGCCCCTCT
* * * * ** *
5240394 GTCGGA--GAACCTGCCCG-ACGGCATCGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGT-GC
830 GGCCGACTG-AGC-GCCCGCAC-AC-TC---GTTTC---G-T--GGGTTGAC-------T-TAG-
* * * * * ** **
5240455 GCACA-TGATGTGCAAAGAGTGCTGGTACTTT
873 GCATACGGA-GTTC----ATTCCCAGT-CTAA
* *** * ** * * **** **
5240486 GCCCTTATATTGGCCCTCTATCCCTCA-TC-AACCCTAGAGAACT-CACAC-CCCCTTAAAG-AG
1 G--C--ATA-CGGAGTTC-ATTCC-CAGTCTAA-GAT-CAG-ACTGGAC-CGAGGGTTACGGCAG
* ** * *** * ** * *** * ** * *** *
5240546 TATTTG-AGATTTTACAGGTTTGCTACCACTAGCCATTAAAGTGTCTGAAAT-GGGG-A-CACTT
55 CACATGCTG-GGCT-CGGGCATG-TGCTGGT-GCCA--CATTTTTCT-TCGTCGGGGCACCA-TC
** ** * * * * * **** * * * *** *** ****
5240607 TTTTCA-AATGGTCACAAAATCT--TTTAC-AC-TTCGAGTTTTTAGC--T--GAATG-TTTTTG
112 GCTGGAGCATCGTCAGAGAACCTGACCGGCGGCATT-GGGGTTCCGGCGATCGGGGGGCTGGGGG
* ** * ** * * * ** * * * ***
5240662 TGCATGC-CAACA-AAAATAC-AAGGAT-CACGT-C-T--ACC-AAGT-TTAGGGCCAGAACTCC
176 GGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATT-GGCCCCCTA-TCC
* ** ** * * * * * ** ** * * *** *
5240717 TTTCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGCTTCAAAAATAGTGAAAAATAAAAAA
237 -CTC-ATCAAACCTCAAGAACTCAC--ACCCCCTTAAAG-----AGCAT-TTG--AGATTTTACA
* * * * * * *
5240781 TGAG-TCGTCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGAC-CATTGTATGAATTTA
290 -G-GTTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TT-T-T---TTCA
* * * * * * * * ****** *
5240839 CAA--GCCATAAAAATGGCATTG-GCACGTAGAAATATGAAGATGT-GCCTAAACCCACCTAT-C
341 -AATGGTCA-CAAAAT--C-TTGTACACTTCG-AGT-T-----TTTAG-CTTAATTTTTTTGTGC
* * ** * * * * ** * * *** * **
5240899 -ACCCTATCAATCCACGCTTGCACAACCCG-TCTC-TCTGATC-GGCGTAGTGCCCGCACGCCCA
393 AAGCC-AACAA---A--AAT--ACAA--GGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTT
******* * ***** * * *** * *** **** * ** * *
5240960 CCCGCCCGCTCGTTGCATCGGTTGGCTTAGGTATACGGAG-TTCATTCCTAGTCTAAGATAG-GA
447 CCAAAAAAAT--TT-TAAAAAAT-CCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * ** * *** * * * ** * ** *
5241023 TCG-GACCAAGGGTTGCGGC-TGCAGGATC-GGTAGCACGCAGAGGGGGACCCGACCGATCCCTG
508 ACGAG-TC--GTCTTGC--CATGAAACTTCACGT-GAAGGCTTA-AGGGA-CC-ATTG-T--ATG
* ** * ****** * * *** * * * * * *
5241085 ACTTTTGCATCCTGCCCCTCTGGCCGGC-TGAGTGCCTGCACGCTCGTTTCATG-GGTTGACT-T
561 A-ATTT--A-CAAG-CCATAAAAATGGCAT-TG-GCATGCA-G-AAATATGAAGATG-TGCCTAA
** * *** * * * * * ** * *
5241147 AGGCA--TACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCGAACC
616 ACCCACCTACCACCCT-A-T-CGA-TCCACGC-T--TGCG--CA-TCCC-GTCT--CTCTG-GCC
* * * ** ** * *** *
5241210 AGACCG-AGGGTTG-CAG-CAGCCCATGCTGGGCTCG-AGCAT-GTGCTGGTGCCACATTTTTCT
667 -G-GCGTA--G-TGCCCGCCCGCCC--GC-CCGCTCGTTTCATCG-G-T--TG--GC-TTAGGCA
* ** ** * * ** * *
5241270 TCACCGGGGCACCATTATCGGAG-C-ATCG-TCGGAGAACCTG-ACTGACAGCATTGGGGTTCCG
717 T-A-CGGAG-TTCA-T-TCCCAGTCTA-AGATC--AG-ACC-GAACCG--AGGGTTGCGG--CAG
* ** *** * *** * * * * ***
5241331 -ACGATC-GGGGCAAC-C-G-GGGGGTGTGCGCACATGATGTGC-G-ATG-G-GTGCTGGTACT-
768 CAGGATCAGCAGC-ACGCAGAGGGGG-ACCCG-AC-CGATCCCCGGCTTGCGCATCCCGCCCCTC
* *** * ** ** * * * *
5241386 TGGCC--CTTA-CGGTAGCAGGA-TCGGTAGCACGTAGAGGGGGACTT-GTCCGATCCCCGACTT
829 TGGCCGACTGAGCGCCCGCA-CACTC-GT--TTCGT-G-GGTTGACTTAG-GC-AT-ACGGAGTT
* ** *
5241446 GCGCATCCCGCCCCTCT-G
885 ---CAT-TC-CCAGTCTAA
** ** * * * ** * ** ** ** *
5241464 GCCGATTGAGTGC---CCGCACG-CT-CGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATTC
1 GCATACGGAGTTCATTCC-CA-GTCTAAG-ATCA-GACTGGACCGAGGGTTACGGCAGCACATGC
*** ** * * ** * * ** *
5241523 CCAG-TCTAAGCATACCGAGTTCATTCC-CA---GTCTAAGATCGGACCGG-ACCGAGGGTTG-T
62 TGGGCTC-GGGCAT---GTGCTGGTGCCACATTTTTCTTCG-TCGG---GGCACC-A---TCGCT
* * * * ** * ** ****
5241581 GGCAGCACATGCTGGGCTTGGGCATGTG-CTAGTGCCACATTTTTCTTCGCAGTGGCAGCATCGC
115 GG-AG--CAT-C--GTC-AGAGAACCTGAC-CG-GCGGCATTGGGGTTC-C---GGC-G-ATCG-
*** ** * * * * * *
5241645 CGAAGTACCTGACCGACGGCATTAGGGT-T-CTG-ACGATCGGGGGGTAGAGGGGGGTTTGCGCA
164 -G--GGGGCTG---G--GG-----GGGTGTGC-GCAC-AT-GATGTG-CGATGGGTG-CTG-GTA
** * ** ** * **
5241707 CATGATGTGCGATGTGTGCTGG-TACTTGGCCCTTATATTCGCCCCCTATCCCTCATTAAACCTC
210 C-T--TG-GCCCT-TATATTGGCCCCCTATCCC------T------C-A----TC---AAACCTC
** * * * *
5241771 GGGAACTCACACTCCCTTAAAGAACATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAATAAAG
250 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* **
5241836 TGTTTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCA
315 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT
* ** * * **
5241900 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAATACGTTT-GGG--ACAA-TTG
380 AATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *** * * * * * ** *
5241961 TAT-GAATTTACAA-GCCATAAAAATGCATTG--GCACGTAGAAA-TATGAAGATGTCCCT-AAA
445 T-TCCAA--AAAAATTTTA-AAAAAT-C-CTGAACCAC--AAAAAGTTTCAA-AAAT-CGTGAAA
* * * * * * ** * * **
5242020 CCAACCTACCACCCTATCGATTCACGGCTTGCGCATCCCATCTCTCTGGCCCGTGTAGTGCCCAC
500 --AA--TA-GA---AAACGAGT--CGTCTTGC-CAT--GA-AACT-T--CACGTGAAG-GCTTA-
* ** * * * * * * * *** * ** *
5242085 CCACCCGTCCCCTCGTTTCATCAGTTAGCTTAGGCATACGGA-GTTCATTCCCA-GTCTA-AGAT
546 --A--GGGACCATTGTATGA--ATTTA-C-AAGCCATAAAAATG-GCATTGGCATG-C-AGAAAT
* * * *** * ** * * * * * **
5242147 -CG--GACCG-GACC-GAGGGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGTGCATCTCAC
600 ATGAAGA-TGTG-CCTAAACCCAC-C-TA---CCACCCTATCGATCCAC-GCTTGCGCATCCCGT
* * * * ** *
5242207 CCCTCTAGCCGGC-TAAGTGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCA
657 CTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCG-CCCGCT-CG-T---TT---CAT-C-G-G-T--
** * * *
5242270 TTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-AGACCAAGGGTTGTGA
706 TGGC---T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGCG-
* * ** * * * * * **** *** * ** *
5242333 TAGCA-CATGCTGGGC-TCAGGCATGTGCTGGTGACTC-ATTTTTCTTTGTCGGGGCACCATCGC
764 --GCAGCAGGATCAGCAGCACGCA-GAG--GGGGACCCGACCGATCCCCGGC-TTGC-GCATC-C
** * * * * * ** * * ** *
5242395 CGAAGCATCGTCGG-AGAACCTGACCGACGGCACTGGGGTTCCGATGATCGGGGGGCCGGGGGGG
821 CG-CCCCTC-T-GGCCG-A-CTGAGCGCCCGCAC----ACT-CG-T-TTC-----G-TGGGTTGA
* * * * * ** **
5242459 GTGT-GCGCACA-TGATGTGTGATGGGTGCTGGTACTTG
868 CT-TAG-GCATACGGA-GT-TCAT---TCCCAGT-CTAA
* **** * * ** * **** **
5242496 GCCATTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACT-CACAC-CCCCTTAAAG-AG-
1 G-C---ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-ACTGGAC-CGAGGGTTACGGCAGC
* ** * **** * * * ** * *
5242556 -CAT-TTTAGATTTTACAGGT-TTGCTGCCAATAGCCATTAAAGTGTTTGAAAT-GGGG-A-CAC
56 ACATGCTGGGCTCGGGCATGTGCTGGTGCC---A--CATT--TTTCTTCG---TCGGGGCACCA-
** ** * * * * * ** ** ****
5242615 TCTTTTCA-AATGGTCACAAAATCTTGTACACTTC-G-AGTT----TT-TAGC--T---GAATTT
110 TCGCTGGAGCATCGTCAGAGAA-CCTG-AC-CGGCGGCA-TTGGGGTTCCGGCGATCGGGGGGCT
**** * ** * ** * * * * *
5242667 TTTTGCGCATGC-CAACA-AAAATAC-AAGGAT-CAT-GT-C----CACC-AAGT-TTGGGGCCA
171 GGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGC-TGGTACTTGGC-CCTTA-TATT--GGCCC
*** * * * * * * ** * * *
5242720 AAAATCCTTCCGA-AAAACTTTGAAAAAAAT-AC-CAAACCATAAAAAGTTTCAAAAATCATGAA
230 CCTATCCCT-C-ATCAAAC-CT-CAAGAACTCACAC-CCCCTTAAAGAG---C----AT-TTG--
* *** * * * * * *
5242782 AAATAAAAAATGAG-TTGTCTTGCCATGAAACTTCACATGAAG-G-CT-TAA--GGGAC-CATTG
280 AGATTTTACA-G-GTTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TT-
* * * * * ***** * ****
5242840 TCTGAATTTACAA--GCCATAAAA--ATG-GCA-TT-G-GCGCACAG--AAATATGAAGATGTGC
335 T-T---TTCA-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAAT-T-TTTTTGTG-
* *** * * ** ** * ** *** *
5242895 CTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGAAT-CC-CGTCTCTCTGGCCGGCGTAG
392 C--AAGCCA---A-CA-AAAAT--A-C-AAGGATCACGTCTACCAAGT-T-TGGGGCC--AAAAC
** ***** ******* * * ** * ** *** ** *
5242958 TGCCCGCC-CGCTCATTTCGTCGGTTGGCTTAGGCATACGAAG-TTCATTCA-CAGTCTAAGATC
442 T-CCTTCCAAAAAAATTTTAAAAAAT-CCTGAACCACAAAAAGTTTCAAAAATC-GTGAAAAAT-
* * * * * * * ** ** * * * ** * **
5243020 GGATCGGACCGAG-GGT-TACGGCA-GTAGGTTCGGGAGCACGCAGAGGGGGACCCGGCCAATCC
503 AGA---AAACGAGTCGTCT-TGCCATGAAACTTCACGTGAAGGCTTA-AGGGA-----CC-ATTG
* **** * ** *** *
5243082 T-TG-ACTTACGTAA-CTCACCCCACTGGCCGGCTGAGCACTCGCACGCTCGTTTTGTAATTTGA
557 TATGAATTTAC--AAGC-CATAAAAATGG-C-ATTG-GCA-T-GCA-G--AAATATG-AA---GA
* * *** * * ** * * * * *
5243144 CTTGGGCATACGGAGTTCA-TTCCCAATCTA-AGCATACAAAG-TT---CATTCCCAATCTAAGA
607 --TGTGCCTA---AACCCACCTACCACCCTATCG-AT-CCACGCTTGCGCA-TCCC-GTCT---C
* * * ** ** ** *
5243203 TC-GGACCGGACCG-AGGGTTG-CGGCAACACATGCTGGGCTCG-AGCAT-GTGCTGG-TGTCA-
660 TCTGG-CCGG--CGTA--G-TGCCCGC-CCGCCCGC-CCGCTCGTTTCATCG-GTTGGCT-T-AG
* *** * * ** * * * *
5243261 -CATTTTTCTTTG-TCGGTGCACCATCGTCGGAGAACCTGACCG-ACAGAATTGGAGTTCCGGTG
714 GCA---TACGGAGTTC-ATTC-CCA--GTCTAAG-ATCAGACCGAACCG-A--GG-GTTGC-G-G
* ** * * ** * * * * *** * * * * **
5243323 ATCGGGGGGCTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATAT
765 --CAGCAGGATCA-----G-CAGCACGCA-GA-GGGGGACCCG-ACCGATCCCCGG-C------T
* * *** * * * * * * * ** *
5243388 TG-GC-CCCCTATCCCACATCAAACC-ACAAGAAG-GCACACCCCCTCATTTCATCGATTTGGCT
812 TGCGCATCCC--GCCC-C-TCTGGCCGAC-TG-AGCGCCCGCACACTCGTTTCGT-GGGTTGACT
*
5243449 TAGGCATACGGAGTTCATTCCCACTCTAA
870 TAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * **
5243478 G-AT-CGGACCGAACCGAGGGTTGTGGCAG--TAGGATC-G-GTAGCACGCAGAGGGGGACTCGG
1 GCATACGGA--G-TTC-A----T-TCCCAGTCTAAGATCAGACT-GGAC-C-GAGGGTTA--CGG
* ** * ** * * * ** *
5243537 CTG-ATCCCCGACTTGTGCATCCCGCCCTTCTGGCCGGTTGAGCACCCGCACGCTTAT-TTCGTC
52 CAGCA--CATG-C-TGGGC-T--CGGGCATGT-GCTGG-T--G----C-CACATTTTTCTTCGTC
** **
5243600 GGTTGGC-TTAT-GCATACGGAGTTCATTCCCAGTCTA-AGGTCAGACCAAACCGAG-GG--TTG
101 GG--GGCACCATCGC-T--GGAG--CA-T--C-GTC-AGA-G--A-ACCTGACCG-GCGGCATTG
* ** * * *
5243659 TGGTAGTAGGAT-CGGCAGCACGCAGAGGGGGACCTGGCTGATCCCTGGCTTGTGCATCCCACTT
149 -GG--GT----TCCGGC-G-A-TC-G-GGGGG--CTGG--G------GGGGTGTGC-GCACA-TG
* * *** ** * * * *** * ** *
5243723 TTCTGGCTGACTGAACGCCCGTAC---GCTCATT-TCGTGGGTTGACTTAGGCATACAGAGTTCA
190 ATGT-GC-GA-TGGGTGCTGGTACTTGGC-CCTTAT-ATTGG-CCCCCTATCCCT-C--A--TCA
** ** * ** ** * **
5243784 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA-AG-A-TT-AGACTGGACTGAGG---G-
244 -AACC--TC-AAG-A-ACTCA---CA-CCCCCTTAAAGAGCATTTGAGATTTTAC--AGGTTTGC
* * ** * * ** * * *** *
5243841 TTCCAGCAGCACA-TACTGGGCTCGGGTATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCAC--
297 TGCCAGTAGC-CATTAAAGTG-TC-TG-AAATG--GG-GAC--ACTTTT-TTCAAATGGTCACAA
* * * ** *** * * ** * *** *
5243903 CATCGTCGGAGCATCACCGAAGAACCTGACCGATGGCATTGGGGTTTCGGTGATCGGGGGGGCCG
352 AATC-TTGTA-CA-CTTCG-AG-TTTTTA--GCT-TAATT----TTT---T--T-GTGCAAGCCA
******* * * ** * ** * * * * **
5243968 GGGGGTGTGCGCACATGATGTG-TGAAGGGT-GCTGGTACTT-GGCCCTTATATTGGCC--CCCT
399 ACAAAAAT----ACA--A-G-GATCACGTCTACCAAGT--TTGGGGCC-AAAACT--CCTTCCAA
**** ** * ** ** ***** * * * ** * *** *
5244028 ATCCCTCATCAAATGTCGAGAACTCAC-ACCCCCTT-AAAGAGCATTTAAGATTTTACA-G-GT-
451 AAAAATTTTAAAAAATCCTGAAC-CACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * * * * * * *
5244088 TTGC-TACCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGA-CATTGT-T---TTCA-AATGGT
515 GT-CTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGACCATTGTATGAATTTACAA--GC
* * * *** ** * *** **
5244142 C-TCAAAAT--C-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCAACCAAAAAAAATA
572 CATAAAAATGGCATTG-GCA-TGC-AG-AAATA--TGAA----GATGTGCCTA--AACCCACCTA
* *** * * * * *** * **** * *********
5244203 CAAGGATCA-CGCCTACCAAGTTTG-G-TTCCAAAACTC-CT-TCCGAAAAAATTTAAAAAAAAT
625 CCACCCT-ATCG-AT-CCACGCTTGCGCATCC-CGTCTCTCTGGCCG-GCGTA-GTGCCCGCCCG
* *** * * *** * * * ** *
5244263 ACCGAATTG-TAAAAAGTTTTGAAAATC-G-TGAAAAATA-GAAAAC-GAG-TC-GT-CTTG-CC
684 CCCG-CCCGCT----CG-TTT---CATCGGTTG--GCTTAGGCATACGGAGTTCATTCCCAGTCT
*** * * ** * * * *** *
5244319 AAGA--A-ACTTCACGTGAAGGCTTAAGGGAGCATTGGATGAATTTACAAGCCATAAAAATGGGA
738 AAGATCAGACCGAAC-CG-AGGGTTGCGGCAGCA--GGAT-CA---GC-AG-CACGCAGA-GGG-
* * ***** * * * * ** *
5244381 TTGGCACGCAGA--AATATGAAGATGTGC-CTAAACCCACCTACCACCCT-ATCGA-TCCA-CGA
791 --GG-AC-CCGACCGATCCCCGGCT-TGCGC--ATCCC-GC--CC-CTCTGGCCGACT-GAGCG-
** * * * ** * * *
5244440 CTTGCACA-TACCGTCTTTCTGGCTGGTGTAGTG-C-CAGCCCGCCCGTCCGCCCGCTCGTT-TC
843 CCCGCACACT--CG--TTTC--G-TGG-GT--TGACTTAG---G--CATACG-GAGTTCATTCCC
**
5244501 -GTCGGTTG
892 AGTC--TAA
* ** * **
5244509 GCTTA-GGCA-TAAGGATT-TC-GTTCCCAG-TCTAAGA-TCGGACCACCGTGAGGGTTACGGCA
1 GCATACGG-AGT--TCATTCCCAG-TCTAAGATC--AGACT-GG---ACC--GAGGGTTACGGCA
*** * * * *
5244568 GCACATGCTCACCTCGGGCACGTGCT-GTGTCATATTTTTCTTC-ACTGGGGCACCATCG-TCGG
54 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCT-GG
** * * * * * * * *
5244630 AGCATCACCGGAGAACCTGATCGGTGGTATTGAGGTTTCGGCGATCGGGGGGGCCGAGGGGGTGT
117 AGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGT
**
5244695 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGATCATCAAA
181 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
5244760 CCTCGAGAACTCACACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATT
246 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
**
5244825 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATTATCACAAAATCTTGTACACTTCGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
5244890 GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
376 GCTTAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** *
5244955 CTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCAC-AAAAGTTTCAAAAATCATGAAAAATAGA
441 CTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
5245019 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
506 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
5245084 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTA-CAGCCCTATC
571 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATC
** * * *
5245148 GATCCACGGCTTGAACATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCTGCCTGCCCGCCCGATC
635 GATCCAC-GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-GCCCGCCCGCTC
* * * * * **
5245213 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTATGATCAGATC-AGAGTGAGGG
695 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGG
* * * * * * **
5245277 TTACGGCAGCAGGATC-GACAGCACGTAGAAGGGGACCCGACCGATTCCTGACTTGCTTATCCCG
759 TTGCGGCAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * *
5245341 CCCCTCTGGCCGACTGAGCGCCCGCACGCTTC-TTTTGTGGGTTGACTTAGGCATACGGAGTTAA
823 CCCCTCTGGCCGACTGAGCGCCCGCACAC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
5245405 TTCCTAGTCTAA
887 TTCCCAGTCTAA
* * *
5245417 GCATAAGGAGTTCATACCCAGTCTAAGATCAGA-TCCGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGCTGG
* * * ** *
5245481 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCG-TCGAAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGA
* * * *
5245545 GAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGGG--GCCGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCTG-GGGGGGTGTGCGCACATGATG
* * ** *
5245608 CGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGGACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
5245673 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCAGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
5245738 ATGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
** * * ** *
5245803 TGTGCGTGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTGTAGCCAAAACTCCTTCCGAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *
5245868 AAATTTTAAAAAATACC-GAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAAT-CCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
5245932 CTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCGAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ***
5245997 GCATTGTCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTT
** * * * *
5246062 GCGCATCCTATCTCTCTGGCCAGG-GTAGTGCCTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGC
646 GCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* ** ** * *
5246126 TTTGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGATTGAGGGTTACGGTAGCAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGAT
* * *
5246190 C-GACAGCACGCAGAAGAGGACCCGATCGATCCCCGGCTT----A----------CT-------T
774 CAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
5246233 -A-----CG----CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCCAGTCCAA
838 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
5246284 GCATACAAAGCTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCACAGGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
5246349 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGAG
* * * * * * * *
5246413 AACCTGAACGACGGCATTGCGGTTCAGGTGACCAGGGGGGCCGGGGGGGTGTGCCCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGT
5246478 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA----TC--C--ACCT-AGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTC
*
5246534 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
5246599 ATGGGGACATTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGA-TTTTTGAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTTAATTTTT
* * * * * *
5246663 TTTTGCATGCCAACAAAAATACAAAGATCAGGTCTACCAA-TTTGGGGCCAAAAACTCCTTGCGA
387 TTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAA
* * *
5246727 AAAAATTTT-AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGGAAAAATAG-AAATGAGTC
451 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGT-GAAAAATAGAAAACGAGTC
* *
5246790 ATCTTGCCATGAAACTTCACGTGAA-GCTTTAA-GGACCATTGTACGAATTTTACAAGCCA-AAA
515 GTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAA-TTTACAAGCCATAAA
* * *
5246852 AATGCCATTGGCATGCAAAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACC
578 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-C
* * * *
5246917 GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGGCCGCCCACCCGTCCGCCCGTTCGTTTCATC
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATC
* ** * * * **
5246982 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAAGGTTACAACAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAG
* * * * ** * *
5247047 TAGGATCGGAAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGCGCATTCCGCCCCTCTGGT
768 CAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
5247112 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
833 CGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5247177 A
898 A
* * * * *
5247178 GCATACGGAGTTCATTTCCAGTCTAAGATC-GAAATGTACTGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTACGGCAGCACATGCTGG
* ** ** * * *
5247242 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGAAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAG
* * * *
5247307 AACCTGACCGGCGGCATTAGGGTTCCGTCGATCGGGGGTGC-CGGGGGGTGTACGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG-GCTGGGGGGGTGTGCGCACATGATGT
* *
5247371 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
5247436 CACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * *
5247501 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTGGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* * *
5247566 GTGCATGCCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * *
5247631 AAGTTTT-AAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGT
453 AAATTTTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5247694 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5247759 GCATTGGCAAGCAGAAATATGAAGACGTGCCTAAACCCACCTAACACCCTATCGATCCATAGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTT
* * * * * *
5247824 GCGCATCCCGTCTCTCTCGTCGGTGTAGTGCCCACCTGGCCACCCGCCCACCCGCTTGTTTCGTC
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC--G---CCCGCCCGCCCGCTCGTTTCATC
* * * * * * *
5247889 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCGAAGAT-TGAACTGGACTGAGCGTTGCGGCA
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGCGGCA
* * **
5247953 GCAGGAT-TGCCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTG
767 GCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
5248017 GCCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTC
831 GCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
5248082 TAA
896 TAA
* * * **
5248085 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATTGGACCGATGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * ** * ** *
5248150 CTCGAGCATGTGCTGGTGTCATAATTTTCCTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
* ** * * *
5248215 ACCTGACCGGTGGCATTACGGTTTCGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGTG
* * * *
5248280 TGATGGGTGCT-GTAACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCA
195 CGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * * * *
5248344 CACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTTCCAATAGCAATTCAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5248409 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTCAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* * * *** * *
5248474 GTACAAGCCAACAAAAATGCAAGGATCACGTCTACCAGGTTTGGGATGAAAACTCCTGCCGAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** ** * *
5248539 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
5248604 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5248669 ATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGC
* * *
5248734 GCATCCCGTCTCTCTGGCCGACGTAGTGTCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* ** * * **
5248799 CTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGACCGGACTC-AGGGTAGCGGCAATAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-CGAGGGTTGCGGCAGCAGGA
* * * * * * ** * *
5248863 T-TGACAGCACACA-AGGGGGACCCGATCGATTCTCGGTTTGCTTATCCCACCCCTCTGGCCGAT
773 TCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * *
5248926 TGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
5248988 GCATACGGAGTTCATACCCAGTCTAAGATCA-AATCGGACCGAGGGTTGTAGAAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
5249052 GCTCGGGCATATGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAGCG-TCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGA
** * * * *
5249116 GAACCTGACCGGTAGCACTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGTACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATG
* * * *
5249181 TGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGGACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
5249246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5249311 ATGGGGACACTTATTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * * ** ****
5249376 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGTGAAAACTCCTTGTGCAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
5249441 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5249506 TTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5249571 CATTGGCAAGCAGAAATATGAAGACGTGCCTAAACCCACCTAACACCCTATCGATCCATAGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTG
* * * * * *
5249636 CGCATCCCGTCTCTCTCGTCGGTGTAGTGCCCACCTGGCCACCCGCCCACCCGCTTGTTTCGTCG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC--G---CCCGCCCGCCCGCTCGTTTCATCG
* * * * * * *
5249701 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCGAAGAT-TGAACTGGACTGAGCGTTGCGGCAG
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGCGGCAG
* * *
5249765 CAGGAT-TGCCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
768 CAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
5249829 CCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCT
832 CCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
5249894 AA
897 AA
* * * **
5249896 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATTGGACCGATGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * ** * ** *
5249961 CTCGAGCATGTGCTGGTGTCATAATTTTCCTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
* * * * *
5250026 ACCTGACCGGTGGCATTGCGGTTTCGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGTG
* * * *
5250091 TGATGGGTGCT-GTAACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCA
195 CGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * * * *
5250155 CACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTTCCAATAGCAATTCAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5250220 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTCAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* * * *** * *
5250285 GTACAAGCCAACAAAAATGCAAGGATCACGTCTACCAGGTTTGGGATGAAAACTCCTGCCGAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** ** ** *
5250350 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5250415 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** *
5250480 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGGCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGC
* * * * * * *
5250545 GCATCCCGTCTCTATGGCCGACGTAGT----GCTCGCCCGCCCGTTCGTTTCGTCTGTTAGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * *
5250606 GGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCAGC
* * ** ** ** *
5250671 AGCACGTAGAGGGTGACCCGACCGATCCCTAGCTTGCGCATCTTGCCCCTCTGGCCGGTTGAGTG
778 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * *
5250736 CCCGCACTCTCGTTTCATGGGTTGACTTTGGCATACAGAGTTCATTCCCAG--T--
843 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5250788 -C-TA---AG---ATT----G----A-A-C---C-AGACCGAGGGTTGCCGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
5250831 CTC-GGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTTAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
*** *
5250895 ACCT-ATCCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCAAGGGGGTGTGCACACATGATGT
131 ACCTGA-CCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCTGGGGGGGTGTGCGCACATGATGT
* * ** *
5250959 ACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCGATCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
5251024 CACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * * *
5251089 TGGGGACACTTTTTTCAAATTATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
* * *
5251154 GTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTAGGGCCAAAACTCCTTCCAAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
5251219 AATTTTAAAAAAT-CTCGAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTC
454 AATTTTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5251283 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATCG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5251348 CATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTT
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTG
* * *
5251413 CGCATCCCGTCTTTCTGGCCGGTGTAGTGCCAGCCCGCCCGCTCGCCCGCCCGCCCGCCTGTTCA
647 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-C-CGCCCGCCCGCTCG--T-TTCA
* *
5251478 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGATCGAACCGAGGGTT
701 -----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT
* * * * ** ** * *
5251543 CCGACAGTAGGATCGGCAGCACGCAGAGGGGGACCCCGGTCGATCCTAGTCTTGCTCATCCCGCC
761 GCGGCAGCAGGATCAGCAGCACGCAGAGGGGGA-CCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * * * **
5251608 CCTTTGGCCGGCTGAGCGCCCGGACACTCATTTCATGGGTTGACTTAGACATATAGAGTTCATTC
825 CCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
5251673 CCAGTCTAA
890 CCAGTCTAA
* ** * * *
5251682 GCATACAGAGTTTCATTCCCAGTCTAAGATGGGA-TCGGACCAAGGGTTACGGTAGCACATGCTT
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGCTG
* ** * **
5251746 GGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCATCATCGCCAGAGCATCGTC-GA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAG-
* *
5251810 AGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGTGG-T-GGGGGGTGTGCGCACATGAT
128 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCTGGGGGGGTGTGCGCACATGAT
* **
5251873 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
5251938 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
5252003 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTT
* * * *
5252068 TTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAA
387 TTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** *
5252133 AAAATTTTAAAAAATCCCAAACCAC-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5252197 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5252262 GCATTGGCATGCAAAAATATGAAGATGTTCCTAAACCCACCTACCGCCCTATCAATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* * * *
5252327 GCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCATCGGTT
* * * ** *
5252392 GGCTTAGGCATACGGAGTTCGTTCCCAGTCTATGATCAGATC-AGAGTGAGGGTTGCGCCAGCAG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAG
* * * * ** *
5252456 GATC-GACAGCACACAGAAGGGGACCCGACCGATTCCCGACTTGCTTATCCCACCCCTCTGGCCG
771 GATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
5252520 ACTGAGCGCCCGCACGCTTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 ACTGAGCGCCCGCACAC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5252584 GCATAAGGAGTTCATACCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGCTGG
* *
5252648 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGA
* * **
5252712 GAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGG--GCCGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGT
* * ** *
5252775 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGGACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
5252840 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
5252905 TGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
** * * * ** *
5252970 GTGCGTGCCAATAAAAATACAAGGACCATGTCTACCAAGTTTGTTGCCAAAACTCCTTCCGAAAA
389 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
**
5253035 AATTTTAAAAAATACC-GAACTGCAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAAT-CCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5253098 TTGCTATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
5253163 CATTGTCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTG
** * * * *
5253228 CGCATCCTATCTCTCTGGCCAGG-GTAGTGCCCGCCCGCCCTCACGCTCGTTTCGTCAGTTGGCT
647 CGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* ** * * *
5253292 TTGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGATCGAGGGTTACGGTAGCAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATC
* *
5253356 -GACAGCACGCAGA-----A---GA-GGA--CCCGG--T-CG-AT------CCTC--G--G-CTT
775 AG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
5253394 A-----CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCCAGTCCAA
839 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * * *
5253449 GCATACAAAGCTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGTAGCACAGGTTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
5253514 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-ATCAGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCAGAG
* * * * * * *
5253578 AACCTGAACGACGGCATTGCGGTTCAGGTGACCGGGGGGGCTGGGGGGGTGTGCCCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGT
* **
5253643 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA----TC--C--A-CTGGGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACTC
*
5253699 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5253764 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGA-TTTTTGAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTTAATTTTT
* * * * * * *
5253828 TTTTGCATGCCAACAAAAATACAAAGATCAGGTCTACCAAATTTGGGGCCAAAACTCCTTGCGAA
387 TTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
5253893 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCAT
452 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5253958 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5254022 CCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTT
* * *
5254087 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
* ** * * * ** *
5254152 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAAGGTTACAACAGTAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGG
* * ** ** * * *
5254217 ATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATTCCGCCCCTCTGGTCGGC
772 ATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * *
5254282 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
5254344 GCATACGGAGTTCATTTCCAGTCTAAGATC-GAAATGTATTGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * * * *
5254408 GTTCAGGCATGTGCTGGTGCTACATTTTTCTTC-ACGGGGACACCATCACCGAAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-CACCATCGCTGGAGCATCGTCAGA
* * * * *
5254472 GAACCTGACCGGCGGCATTAGGGTTCCGTCGATCGGGGGTGCCGGGGGGGTGTACGGACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG-GCTGGGGGGGTGTGCGCACATGATG
** * *
5254537 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
5254602 ACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * *
5254667 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTGGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * * * *
5254732 TGTGCACGCCAATAAAAATACAAGGATCACGTCTGCTAAGTTTGGGGCCAAAACTCCTTACGAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAA
* * * * *
5254797 AAAGTTTT-AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAAGGAGTCGT
452 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5254861 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5254926 GCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* *
5254991 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCATCGGTT
* ** * * *
5255056 GGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGACC-AGACTC-ATGGTAGCGGCAACA
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC-CGAGGGTTGCGGCAGCA
* * ** * * * ** *
5255119 GGAT-TGACAGCACACA-AGGGGGACCCGGTCAATTCCCGCCTTGCTTATCCCACCCCTCTGGCC
770 GGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
5255182 GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 GACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5255247 GCATACGGAGTTCATACCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGAACCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
5255312 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAGCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
* ** * * * *
5255377 ACCTGACTGGTAGCACTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGTACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCTGGGGGGGTGTGCGCACATGATGTG
* * *
5255442 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGGACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
5255507 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5255572 GGGGACACTTATTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTG
* * * ** ****
5255637 TGCATGCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGTGAAAACTCCTTGTGCAAAA
390 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** *
5255702 ATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5255767 GCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
5255832 TTGGCAAGCAGAAATATGAACACGTGCCTAAACCCACCAAACACCCTATCGATCCATAGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGCG
* * * * *
5255897 CATCCCGTCTCTCTGGTCGGTGTAGTGCCCACCTGGCCACCCGCCCACCCGCTCGTTTCGTCAGT
649 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC--G---CCCGCCCGCCCGCTCGTTTCATCGGT
* * * * * * *
5255962 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGCGTTGCAGTAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAG
* * *
5256027 GAT-AGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
771 GATCA-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
5256091 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAA
835 ACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
5256155 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATTAGACCGATGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * * * *
5256220 CTCGAGCTTGTGCTGGTGTCATAATTTTCCTCATCGGGGCACCATCGCCGGAGCATC-ACTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTC-AGAG
** ** *
5256284 AACCTGACCGATGGCATTACGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGT
* * * *
5256348 GTGATGGGTGCT-GTAACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTC
194 GCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * * *
5256412 ACACCCCCTTAAAGAGCATTTGCGATTTTAGAGGTTTGCTTCCAATAGCAATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5256477 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTCAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
* * * * * *** * *
5256542 TGTACAAGCCAAGAAAAATGCAAGGATCATGTCTACCAGGTTTGGGATGAAAACTCCTGCCGAAA
388 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
** ** ** * *
5256607 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAACAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
5256672 TTGCCATGAAACTTGACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5256737 CATTGGCACGTAGAAATATGAAGATGTGCGTAAACCCACCTGCCACCCTATCGATCCATGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTG
* * * * * * *
5256802 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCTCGCCCGCTCGCTCGTTTCGTTGGTTAGCAT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
** * * *
5256863 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCTAGGGTTGCGGCAGCAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCAG
** * * ** ** **
5256928 CAGCACATAGAGGGTGACCCGATCGATCCCTAGCTTGCGCATCTTGCCCCTCTGGCCGGTTGAGC
777 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * * *
5256993 GCCCGCACTCTCATTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
5257050 GCATACAAAGTTCATTCCCAGTCTAAGGTCAAACCGGACCGAGGGTTGCCGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
*
5257115 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCG-TCGGAGCATCGTCAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCT-GGAGCATCGTCAGA
* *** *
5257177 GAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCAAGGGGGTGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCTGGGGGGGTGTGCGCACATGATG
* * *
5257242 TACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
5257307 ACACCACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 ACACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
5257372 AATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGCTTGTAGCTGAATTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTTAATTTT
* * *
5257436 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGA
386 TTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** * * *
5257501 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCA
451 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
5257566 TCTTACCATGAGACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * *
5257631 GGCAATGGCAAGCAGAAACATGAAGATGTGTCTAGACCCACCTACCACCCTATCGATCCATGGCA
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCT
* * * *
5257696 TGCGCATCCCGTTTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTGGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCATCGGT
* * * * * *
5257761 TGACTGACGCATATGGTGTTCATTCCCTGTCTAAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5257796 CATACAGAGT
Statistics
Matches: 19297, Mismatches: 3714, Indels: 2936
0.74 0.14 0.11
Matches are distributed among these distances:
858 2 0.00
859 116 0.01
860 380 0.02
861 278 0.01
862 1 0.00
863 114 0.01
864 101 0.01
865 187 0.01
866 8 0.00
867 179 0.01
868 368 0.02
869 850 0.04
870 39 0.00
871 4 0.00
872 2 0.00
873 134 0.01
874 51 0.00
875 12 0.00
876 10 0.00
877 170 0.01
878 10 0.00
879 6 0.00
880 8 0.00
881 132 0.01
882 463 0.02
883 4 0.00
884 9 0.00
885 12 0.00
886 9 0.00
887 5 0.00
888 5 0.00
889 83 0.00
890 151 0.01
891 9 0.00
892 314 0.02
893 145 0.01
894 1293 0.07
895 670 0.03
896 823 0.04
897 35 0.00
898 137 0.01
899 54 0.00
900 678 0.04
901 899 0.05
902 563 0.03
903 3288 0.17
904 443 0.02
905 180 0.01
906 243 0.01
907 974 0.05
908 1392 0.07
909 17 0.00
910 16 0.00
911 159 0.01
912 17 0.00
913 16 0.00
914 180 0.01
915 194 0.01
916 279 0.01
917 44 0.00
918 98 0.01
919 10 0.00
920 9 0.00
921 21 0.00
922 5 0.00
923 5 0.00
924 13 0.00
925 14 0.00
926 30 0.00
927 17 0.00
928 13 0.00
929 23 0.00
930 13 0.00
931 18 0.00
932 13 0.00
933 20 0.00
934 14 0.00
935 21 0.00
936 23 0.00
937 43 0.00
938 22 0.00
939 19 0.00
940 14 0.00
941 18 0.00
942 10 0.00
943 7 0.00
944 16 0.00
945 10 0.00
946 5 0.00
947 3 0.00
948 21 0.00
949 6 0.00
950 7 0.00
951 17 0.00
952 10 0.00
953 10 0.00
954 5 0.00
955 4 0.00
956 4 0.00
957 1 0.00
958 2 0.00
959 5 0.00
960 6 0.00
961 9 0.00
962 9 0.00
963 8 0.00
964 23 0.00
965 14 0.00
966 10 0.00
967 18 0.00
968 18 0.00
969 17 0.00
970 38 0.00
971 14 0.00
972 9 0.00
973 9 0.00
974 9 0.00
975 4 0.00
976 5 0.00
977 9 0.00
978 36 0.00
979 26 0.00
980 24 0.00
981 31 0.00
982 28 0.00
983 27 0.00
984 23 0.00
985 25 0.00
986 14 0.00
987 26 0.00
988 31 0.00
989 27 0.00
990 20 0.00
991 9 0.00
992 22 0.00
993 27 0.00
994 17 0.00
995 23 0.00
996 18 0.00
997 31 0.00
998 25 0.00
999 14 0.00
1000 20 0.00
1001 24 0.00
1002 11 0.00
1003 25 0.00
1004 23 0.00
1005 16 0.00
1006 16 0.00
1007 22 0.00
1008 13 0.00
1009 14 0.00
1010 8 0.00
1011 20 0.00
1012 21 0.00
1013 39 0.00
1014 22 0.00
1015 12 0.00
1016 7 0.00
1017 13 0.00
1018 13 0.00
1019 23 0.00
1020 25 0.00
1021 15 0.00
1022 23 0.00
1023 27 0.00
1024 333 0.02
1025 307 0.02
1026 290 0.02
1027 291 0.02
1028 253 0.01
1029 196 0.01
1030 246 0.01
1031 324 0.02
1032 271 0.01
1033 271 0.01
1034 193 0.01
1035 203 0.01
1036 826 0.04
1037 190 0.01
1038 196 0.01
1039 243 0.01
1040 194 0.01
1041 168 0.01
1042 153 0.01
1043 157 0.01
1044 127 0.01
1045 352 0.02
1046 145 0.01
1047 228 0.01
1048 134 0.01
1049 95 0.00
1050 90 0.00
1051 112 0.01
1052 86 0.00
1053 381 0.02
1054 227 0.01
1055 108 0.01
1056 202 0.01
1057 111 0.01
1058 248 0.01
1059 362 0.02
1060 223 0.01
1061 152 0.01
1062 131 0.01
1063 119 0.01
1064 100 0.01
1065 108 0.01
1066 191 0.01
1067 172 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCAGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGT
GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCAGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5236043 original size:26 final size:26
Alignment explanation
Indices: 5236004--5236063 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
5235994 GTTCACTTAG
5236004 GCATACGGACTTCATTCCC-AGTCTAA
1 GCATACGGACTTCATTCCCTA-TCTAA
*
5236030 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGACTTCATTCCCTATCTAA
5236056 G-AT-CGGAC
1 GCATACGGAC
5236064 CGGGTCGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 24 0.77
27 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCTATCTAA
Found at i:5236932 original size:26 final size:26
Alignment explanation
Indices: 5236896--5236948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5236886 GTTGACTTAG
5236896 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5236922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5236948 G
1 G
5236949 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5239576 original size:26 final size:26
Alignment explanation
Indices: 5239540--5239592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5239530 GTTGACTTGG
5239540 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
5239566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
5239592 G
1 G
5239593 ATCAGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:5241179 original size:26 final size:26
Alignment explanation
Indices: 5241149--5241201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5241139 GTTGACTTAG
5241149 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
5241175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5241201 G
1 G
5241202 ACCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5241536 original size:26 final size:26
Alignment explanation
Indices: 5241506--5241558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5241496 GTTGACTTAG
*
5241506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5241532 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5241558 G
1 G
5241559 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:5242292 original size:26 final size:26
Alignment explanation
Indices: 5242256--5242308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5242246 GTTGACTTAG
5242256 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5242282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5242308 G
1 G
5242309 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5243749 original size:159 final size:159
Alignment explanation
Indices: 5243429--5243796 Score: 495
Period size: 159 Copynumber: 2.3 Consensus size: 159
5243419 GGCACACCCC
* * * * *
5243429 CTCATTTCATCGATTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGACCGAACCGA
1 CTCATTTCGTCG-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
*
5243494 GGGTTGTGGCAGTAGGATCGGTAGCACGCAGAGGGGGACTCGGCTGATCCCCGACTTGTGCATCC
65 GGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACTCGGCTGATCCCCGACTTGTGCATCC
* ** *
5243559 CGCCCTTCTGGCCGGTTGAGCACCCGCACG
130 CACCCTTCTGGCCGACTGAACACCCGCACG
* * *
5243589 CTTATTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAAACCGAG
1 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
* * *
5243654 GGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGAC-CTGGCTGATCCCTGGCTTGTGCATCC
66 GGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACTC-GGCTGATCCCCGACTTGTGCATCC
** * * *
5243718 CACTTTTCTGGCTGACTGAACGCCCGTACG
130 CACCCTTCTGGCCGACTGAACACCCGCACG
* * *
5243748 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5243797 CATACGGAGT
Statistics
Matches: 181, Mismatches: 26, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
158 1 0.01
159 170 0.94
160 10 0.06
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
GGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACTCGGCTGATCCCCGACTTGTGCATCCC
ACCCTTCTGGCCGACTGAACACCCGCACG
Found at i:5243806 original size:26 final size:26
Alignment explanation
Indices: 5243770--5243822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5243760 GTTGACTTAG
5243770 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5243796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5243822 G
1 G
5243823 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5245427 original size:26 final size:26
Alignment explanation
Indices: 5245391--5245443 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5245381 GTTGACTTAG
* * *
5245391 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATAAGGAGTTAATACCCAGTCTAA
*
5245417 GCATAAGGAGTTCATACCCAGTCTAA
1 GCATAAGGAGTTAATACCCAGTCTAA
5245443 G
1 G
5245444 ATCAGATCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTAATACCCAGTCTAA
Found at i:5247182 original size:26 final size:26
Alignment explanation
Indices: 5247152--5247204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5247142 GTTGACTTAG
5247152 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
5247178 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
5247204 G
1 G
5247205 ATCGAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Done.