Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 46 of 120
Found at i:5247683 original size:26 final size:26
Alignment explanation
Indices: 5247628--5247684 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
5247618 CTCCTTCCGA
* **
5247628 AAAAAGTTTTAAAAATCTCGAACCAC
1 AAAAAGTTTCAAAAATCTCGAAAAAC
*
5247654 AAAAAGTTTCAAAAATCAT-GAAAAAT
1 AAAAAGTTTCAAAAATC-TCGAAAAAC
5247680 AAAAA
1 AAAAA
5247685 ATGAGTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCTCGAAAAAC
Found at i:5248099 original size:26 final size:26
Alignment explanation
Indices: 5248059--5248111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5248049 GTTGACATAG
*
5248059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5248085 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5248111 G
1 G
5248112 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5248992 original size:26 final size:26
Alignment explanation
Indices: 5248962--5249014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5248952 GTTGACTTAG
*
5248962 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
5248988 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
5249014 G
1 G
5249015 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:5249910 original size:26 final size:26
Alignment explanation
Indices: 5249870--5249922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5249860 GTTGACATAG
*
5249870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5249896 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5249922 G
1 G
5249923 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5251691 original size:26 final size:27
Alignment explanation
Indices: 5251657--5251709 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
5251647 TTGACTTAGA
*
5251657 CATATAGAG-TTCATTCCCAGTCTAAG
1 CATACAGAGTTTCATTCCCAGTCTAAG
5251683 CATACAGAGTTTCATTCCCAGTCTAAG
1 CATACAGAGTTTCATTCCCAGTCTAAG
5251710 ATGGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (27 bp):
CATACAGAGTTTCATTCCCAGTCTAAG
Found at i:5252594 original size:26 final size:26
Alignment explanation
Indices: 5252558--5252610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5252548 GTTGACTTAG
* *
5252558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATACCCAGTCTAA
5252584 GCATAAGGAGTTCATACCCAGTCTAA
1 GCATAAGGAGTTCATACCCAGTCTAA
5252610 G
1 G
5252611 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATACCCAGTCTAA
Found at i:5254348 original size:26 final size:26
Alignment explanation
Indices: 5254318--5254370 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5254308 GTTGACTTAG
5254318 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
5254344 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
5254370 G
1 G
5254371 ATCGAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:5255257 original size:26 final size:26
Alignment explanation
Indices: 5255221--5255273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5255211 GTTGACTTAG
*
5255221 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
5255247 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
5255273 G
1 G
5255274 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:5256158 original size:26 final size:26
Alignment explanation
Indices: 5256129--5256181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5256119 GTTGACATAG
* *
5256129 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5256155 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5256181 G
1 G
5256182 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5258652 original size:26 final size:26
Alignment explanation
Indices: 5258616--5258668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5258606 GTTGACTTAG
*
5258616 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5258642 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5258668 G
1 G
5258669 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5260135 original size:26 final size:26
Alignment explanation
Indices: 5260099--5260151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5260089 GTTGACTTAG
*
5260099 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5260125 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5260151 G
1 G
5260152 AACGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5260880 original size:26 final size:26
Alignment explanation
Indices: 5260844--5260896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5260834 GTTGACTTAG
*
5260844 GCATATGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
5260870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5260896 G
1 G
5260897 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:5263358 original size:26 final size:26
Alignment explanation
Indices: 5263322--5263374 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5263312 GTTGACTTTG
*
5263322 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5263348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5263374 G
1 G
5263375 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5265102 original size:912 final size:905
Alignment explanation
Indices: 5262458--5266067 Score: 4950
Period size: 912 Copynumber: 4.0 Consensus size: 905
5262448 GTTGACTTAG
* *
5262458 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
5262523 CTC-AGGCATGTGCCGGTGTCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATTGCCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCG-GGCACCATCACCGGAGCATCGCCGGAG
* *
5262587 AACCTGACCGACGGCATTGGGGTTCCGGCGAT-GGAGGGGCCGCGGGGGGTGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
* ** * * *
5262651 TGCCATAAGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTA
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5262716 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAA
259 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5262781 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATATCTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5262846 TGTGCATGCCAA-AAAAATACAAGGATCACGTATACCAAGTTTGGGACCAAAAATCCTTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAA
* * *
5262910 AAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
*
5262975 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAT-AAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5263039 CATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
5263104 CGCATCCCGTCTCTCTGGCCAGCATAGTGCCTGCCCGCCCGCCCACCCGCTCGTTTCATCGATTT
649 CGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATAGGTTG
* * * * * *
5263169 TCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATTGGACCAA-GGAT----T---ATGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAAGA
* ** * *
5263226 T----AGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGTGCATCTTGCCCCTCTAGCCGGCT
779 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGCT
* * * * * *
5263287 GAG-TGCCTGCACGCTCGTTTTGTGGGTTGACTTTGGCATACGGAGTTCATTCCCCGTCTAA
844 GAGCGGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
5263348 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5263413 CTCGGGCAGGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGCTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGCACCATCACCGGAGCATCGCCGGAGA
* *
5263478 ACCTGACCCG-CGGCATTGAGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATG
130 ACCTGA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
* *
5263539 TGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5263604 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
259 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5263669 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTGAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
5263734 TGTGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGCGGATAAAACTCCTTGC-AAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAA
* ** * * *
5263798 AAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTGGAAAATCGTGAAAAATAGGAAATGAGTCGT
453 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
*
5263863 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
5263928 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5263993 GCGCATCCCGTTTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATAGGTT
** * * * *
5264058 GGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAAG
* * * * * *
5264123 ATCAGTAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGC
778 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGC
* *
5264188 TGAGCGGCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTCCTAGTCTAA
843 TGAGCGGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
5264250 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
5264315 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTGGACCATCGCCGGAGCATCGTCAAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGG-GCACCATCACCGGAGCATCGCCGGAGA
* * *
5264380 ACCTGATCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
*
5264445 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5264510 CAACCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTGAAA
260 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5264575 TGGGGACACTTTTTTCAAACGGTCAAAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
5264640 GTGCATGCCAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTC---AA
* * ** * *
5264705 ATTACGAAAATTTTAAAAAATCCCGAACCGCATAAAGTTTTGAAAATCATGAAAAATAGAAAATG
451 A--A--AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
5264770 AGTCATCTTGCCATGAAAGTTCATGTGAAGGCTTAA-GGACCATTGTTTGAATTTACAAGCCATA
512 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5264834 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
577 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * *
5264899 CGGCTTGCGCATCCCGTCTCTCCGACCGGCGTAGTGCCTGCCCTCCCGCCCGCTCGCTCATTTCG
642 CGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCA
* *
5264964 TAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGACCAAGGGTTGCGGT
707 TAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGT
* * * * *
5265029 AGCAAGATTGGCAACACACAGTGGGGGACCCGTCCGATCCCC-AGCTTACGCATCCTGCCCCTCT
772 AGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTACGCATCCTGCCCCTCT
* * ** * *
5265093 GGTCGGCTGAGC-GCCTGCACGTTTGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAG
836 GGCCGGCTGAGCGGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
5265157 TCTAA
901 TCTAA
* * * *
5265162 GCATACTGAGTTCATTCACAGTCTAACATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5265227 CTTCG-GCATGTGTTGGTGCCGTATTTTTCTTCATCGGGACACCATCATCGGAGCATCACCGGAG
66 C-TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG-CACCATCACCGGAGCATCGCCGGAG
* ** * *
5265291 AACCTGATCGGTGGCATTGGGGTTCCGAG-GATCGGGGGGGCCGGGGCGGGTGTGCACACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCG-GCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGAT
** * *
5265355 GTGTAATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
5265420 CAC-ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 CACAACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
5265484 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
5265549 TTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-A
387 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAA
* * *
5265613 AAAATATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5265678 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAA
516 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
5265743 TGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGAC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
5265808 TTGCGCATCACGTCTCTATGGCCAGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCATTTCGTCA-
646 TTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCAT-AG
** ** * *
5265872 GTTGGCTTAGGCATACGGAGTTCA-TCGCCAGTCTAAGATTGGAAC-AGACTGAGGGTTACGGCA
710 GTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAG-ACTAGACCAAGGGTTGCGGTA
* * * * * * *
5265935 GCAGGACCGACAGCACGTAGAGGGGTACCCGACCGATCCTCGACTTGCGCATGCC-GCCCCTCTG
773 GCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCAT-CCTGCCCCTCTG
* * * * *
5265999 GCCGGCTGAG-TGCCCGCATGCTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGT
837 GCCGGCTGAGCGGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
5266063 CTAA
902 CTAA
5266067 G
1 G
5266068 ATCGGATTGG
Statistics
Matches: 2407, Mismatches: 266, Indels: 79
0.87 0.10 0.03
Matches are distributed among these distances:
888 210 0.09
889 158 0.07
890 314 0.13
891 8 0.00
895 1 0.00
898 4 0.00
901 5 0.00
902 238 0.10
903 11 0.00
904 86 0.04
905 552 0.23
906 8 0.00
908 2 0.00
909 2 0.00
911 8 0.00
912 710 0.29
913 90 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGCACCATCACCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAA
ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATAGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAAGATC
GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGCTGA
GCGGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:5265166 original size:26 final size:26
Alignment explanation
Indices: 5265136--5265187 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5265126 GTTGACTTAG
*
5265136 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCACAGTCTAA
**
5265162 GCATACTGAGTTCATTCACAGTCTAA
1 GCATACAAAGTTCATTCACAGTCTAA
5265188 CATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACAAAGTTCATTCACAGTCTAA
Found at i:5268194 original size:902 final size:891
Alignment explanation
Indices: 5266180--5293371 Score: 18637
Period size: 902 Copynumber: 30.1 Consensus size: 891
5266170 AACCTGACCG
* *
5266180 GCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
* * * * * *
5266245 TTGAAATGGTCACAAAATGTTCTACACTTTGAGTTTTTAGCTGAATATTTTTGTCCTTGCCAACA
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACA
*
5266310 AAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
129 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
5266375 CCTGAACCGCAAAAAG-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACA
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
5266439 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-CT
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCA
*
5266503 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
5266568 CTCTGGTCGGCGTAGCGCCAGCACGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
388 CTCTGGCCGGCGTAGTG-C--C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * *
5266633 AGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATTGGTAGCACGT
449 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * *
5266698 AGAGGGGGACCCGACCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCAC
514 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
5266763 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
579 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * ** * *
5266828 CCCAGTCTAAGATCGGA-TCAGAATGAGGGTTTCGATATCACATGCTGGGCTCAGGCATGTGCTG
644 CCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
5266892 GTGCCGCATTTCTCTTCGTC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA
708 GTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-G-AT---CGGAGAACCTGACCGACGGCA
* *
5266956 TTGGGGCTCCGGCGATCGGGGGGGCTC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
764 TTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
5267019 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
828 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5267083 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5267148 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATTCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * * * ** *
5267213 AAATAAAAAGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCTAAAAAAATTTTTAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
5267278 CCGAACCGC-AAAA-ATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
195 CCGAACCCCAAAAAGATTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5267341 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCTCACAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAG
**
5267406 AAATATGAAGATGTGCCTAAACCCACCTACCACAATATCGATCCACGGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
5267471 TCTGACCGGCGTAGTGCCCGCCCGCCCATCTGCCCGCTCATTTCATCGGTTGGCTTAGGCACACA
389 TCTGGCCGGCGTAGTGCCCGCCCG-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
5267536 GAGTTCATTCCTAGTCTAAGATCAGACTAAACCAAGGGTT-CTGGTAGCAGGATTGGCAGCATGC
450 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCACGC
* * * * * * * * * *
5267600 AGAGGGAGACCTGGCCGGTCCCTGGCTTACACATCTCGCCCCTCTGGTCGGCTGAGTGCCCGCAC
514 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
5267665 GCTCGTTTCATGGGTTGACTTAGCCATGCGGAGTTTATTCTCAGTCTAAGCATACGGAGTTCATT
579 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
5267730 CCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGCACATACTGGGCTCGGGCATGTGCTGG
644 CCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * **
5267795 TGCCGTATTTTTCTTCGTCGGGGCACCATC-G-TCGGAGAACTTGACCGGTGGCATTGGGGTTCC
709 TGCCGCATTTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
5267858 GACGATCGGGGGGGCCGGGGGGGCTGTACGCGCATAATGTGTGATGGGTGCTGGTACTTGGCCCT
774 GACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
5267923 CATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
838 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5267977 ACATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
5268042 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATGTTTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAA
* *
5268106 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTT-AAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** * *
5268170 CCAAACCCCAAAAAG-TTTCAAAAATCGTGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACAT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
** * * *
5268234 CACGTGAAGGCTTAAGACACCATTGTATGAATTTAAAAGCCGTAAAAATGGCATTGACAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* *
5268298 AAATATGAAGATGTG-CTAAAACCCACCTACCAGCCTATCAATCCACGGCTTGCGCATCCCGTCT
324 AAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
5268362 CTCTGGCCGGCGTAATGCACGCCCGCCCGCCCGTTTC-TTTCATCGGTTGGCTTAGGTATACGGA
388 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
5268426 GTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTT------G-A-GA----CAGCACGCAGA
452 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * ** ** *
5268479 GGAGGACCCGATCAATCCTCGGCTTGCGCATCCCG-CCCTCTGGTTGGCTGAGCGCTTGCACGTT
517 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
5268543 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATT-CC
582 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
5268607 AGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTTGTGT
647 AGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
5268672 CGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
712 CGCATTTTTCTTCGTCGGGGCACCATC----G-G-A---TCGGAGAACCTGACCGACGGCATTGG
* * * *
5268737 GGTTCCAATGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGGGATGGGTTCTGGTACTTG
768 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
5268801 GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGA
833 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5268860 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
5268925 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAA-AA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAA
* ** * * * *
5268989 GAAATACAAGGATCATGTCTACCAAGTTTGGTCCCCAAACTGCATCC-AAAATATTTTAAAAAAT
130 -AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
5269053 CCCGAACCACAAAATG-TTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * *
5269117 TCACGTGAAGGCCTAAGAGACCATTGTATAAATTTACAAGCTATAAAAATGGCATTGGCACACAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAG
* * *
5269182 AAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
***** * * *
5269247 TCTGGTTTATGTAATGCCCGCCCACCCGCCCGTACGCTTGTTTCGTCGGTTGGCTTAGGCATACG
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * * * *
5269312 GAGTTAATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGACGGTAGGATCGACAGCATGCA
450 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* ** * * * * * * * *
5269377 GAGGAGGACCCGGTCGATCCTCAGCTTGCGCATCCTG-CCCTCTAGCTGGCTAAGTGCCCGTACG
515 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * * *
5269441 TTCATTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATT-
580 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * ** *
5269505 CCAATCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCATGTGCTGGGCTCGAGCATGTGCTGGT
645 CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
5269570 GCCACATTTTTCTTTGTCAGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCGGCGGCATT
710 GCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-G----ATCGGAGAACCTGACCGACGGCATT
5269635 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
766 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
5269700 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCTCTTAAAGA
831 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
5269761 GCATTTGAGATTTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATGTGGACACTTTT
1 GCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
5269826 TTCAAATGGTCACAAAAACTTCTACACTTCGAGTTTTTAACTGAAATGTTTT-TGCATGCCAACA
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACA
* *
5269890 AAAATACAAGGATCACTTCTACCGAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
129 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * ** * * *
5269955 CTTGAACCGCAAAAAG-TTTCCAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGGAACT
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
5270019 TCACGTGAACGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTCGCACGCAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAG
* *
5270084 AAA-AGTGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGACTTGCGCATCCCGTCT
324 AAATA-TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
5270148 CTCTGGCCGACGTAGTGCTCGCCCGTCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
388 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * *
5270213 TTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAT
453 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * *
5270278 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGTACGCTC
518 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * ** *
5270343 GTTTCATGGGTTGACTTAGGTAGACATAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCA
583 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * * **
5270408 GTCTAAGATCGGCCCAGACCAAGGGTTGCAGTGC--CGCAT--T----T--TTC-T-TCGCTAGG
648 GTCTAAGATCGGACTGGACCGAGGGTTGC-G-GCAGCACATGCTGGGCTCGGGCATGT-GCT-GG
* * * *
5270461 -GCAC-CA----TC-AC--C--GG-AGCATC--ACCGGAGAACCTGACCGACGGCATTGGGGTTT
709 TGC-CGCATTTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
5270512 CGTCGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGAACTTGGCCCT
773 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
5270577 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCCTTAAAGG
838 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5270631 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * ** *
5270696 TCAAATGGTCACAAAATCTTGTACACTTGGAATTTTTAGCTGAATCTTTTTGCCCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAA
* *
5270761 AAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * **
5270826 CGGAACCTCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAATC-AGTCGTCTTGCCATGAAACT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACT
*
5270889 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCAT-GCA
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCA
*
5270953 GAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
5271018 CTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
388 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
5271079 TTCATTCTCAGTCTAAGATCACACCAGACCTAGGGTT-----A-C-GG-T----AGCACGTAGAG
453 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * *
5271132 GGGGACCCGACCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGATC
518 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
5271197 ATTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
583 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * * * * *
5271262 GTCTAAAATAAGA-TCGGACCGAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTTGTGC
648 GTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
5271326 C-TATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCACCGGAGTACCTGACCCG-TGGCAATG
712 CGCATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT---CGGAGAACCTGA-CCGACGGCATTG
* * *
5271389 GGGTTCCGACGGTC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTACTT
767 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
5271453 GGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGA
832 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5271512 GCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5271577 TCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAA
*
5271642 AAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** * * * * *
5271707 CTGAACCGTAAAAA-ATTTTAAAAATTGTGAAAAATAGATAACGAGTCATCTTGCCATGAAATTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
5271771 CACGTGAAAGCTTAACGGAACATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* * *
5271835 AAATATGAAGATGTGCCTAAACCCACCTACCAACTTATTGATCCACGGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * * *
5271900 CCTAGTCGGCGCAGT----GCCCGCCAGCCCGCTCGTATCGTCAGTTGGGTTAGGCATACGGAGT
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** ** * *
5271961 TCATTCCGAGTCTAAGATCAGACTGGACCGAGGGTTGTAGCAGCAGGATCGGTAGCACACAGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * * * * * * *
5272026 GGGACCCGGCCGATCCTCAGCTTACGCATCCCACCTCTCTAGTCGGTTTAGCACCCGCACACTCG
519 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* ** *
5272091 TTTCGTGGGTTGACTTAGGTGTACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG
584 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
5272156 TCCAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
649 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
5272221 TATTTTTCTTCGTTGGGTCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG
714 CATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT---CGGAGAACCTGACCGACGGCATTGGGG
* * * * *
5272286 TTCCGACGATCGGGGAGGCCAGGGGGGGGAGGGGCGTGCGCAGATGATGTGTGATGCGTGCTGGT
770 TTCCGACGATCGGGGGGGCC------GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5272351 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGA
828 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5272415 GCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTTTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
5272480 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *** *
5272544 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAGCACCTGAAGAAAAAATTTTTAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * *
5272608 TCGAGCCGTAAAAAG--TTTCAAAATCCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACT
195 CCGAACCCCAAAAAGATTTTGAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5272671 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGAATTGGCAT-GCT
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGC-
* * * *
5272735 AGAGATATGAAGATGTACCTAAACCCA-CTACCACCCAATCGATCCATGGCTTGCGCATCCCGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** *
5272799 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTTCG-T--TTTCGTCGGTT-GCTTA-GCATAGGCG
387 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG-G
* * * * **
5272859 AG-TCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTACAGCAGCAAGATCGGCAGCCCATA
451 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * ** ** * * *
5272922 GAGGGGGA-CCTAGCCGATCTCTTGCTTGCGCATCAAGCCCCTCTGGTCGGTTGAGCACCCGCAC
515 GAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
5272986 ACTCGTTTCGTGGGTTGACTTAAGTATACGGAGTATCTTTCCCAGCTCTAAGCAGTACGGAGTTC
579 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGT-TCATTCCCAG-TCTAAGCA-TACGGAGTTC
* * * *
5273051 ATTCCTAGTCTAAGATCGGAACCGAAACTGA-GGTCTGC-GCAGGGCACATGCGTGGGCT--GGC
641 ATTCCCAGTCTAAGATCGG-ACTG-GACCGAGGGT-TGCGGCA--GCACATGC-TGGGCTCGGGC
* *
5273112 ATGTGCTGGGTGTCGCATTTTTCTTCATCGGTGGCACGATCATCGGAAGCATCGCCAGAGAACCT
700 ATGTGCT-GGTGCCGCATTTTTCTTCGTCGG-GGCAC---CATC-G--G-ATCG---GAGAACCT
* *
5273177 TACCGACCGGCA-TGGGGTTTCCGACGATCGGGGGGGCCGGGGGGATGTGCGCACATGATG-GCG
753 GACCGA-CGGCATTGGGG-TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
5273240 AT-GGTGCTGGTACTTGGCCC-TATA-TGGCCCCCTATCCCTCATCAAACCTCGCAGAAGTCACA
816 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACA
*
5273302 CCCCC-TGAAGA
880 CCCCCTTAAAGA
* **
5273313 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCAAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
5273378 TCAAATGGTCCCAAAATCTTGTAGACTTTGA-TTTTTCGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5273442 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
5273507 TCGAACCGCAAAAAG-TTATGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
5273571 CACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGA
*
5273636 AAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** * *
5273701 CTGGTCGG-GTTAGTGCCCGCCCGTCCGCCCGGTCGTTTCGTCAATTGGCTTAGGCAAACGAAGT
390 CTGGCCGGCG-TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
5273765 TCATTCCCAGTCTATGGTCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
5273830 GGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
519 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
5273895 TTTTATGGATTCACTTAGCCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
584 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
5273960 TCTATGATCGGA-TCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCT
649 TCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
*
5274024 GCA-TTTTCTTCGTCGGGGCACCATCGCTCGAGCATCGCCGGAGAACCTGACCGACGGCATT-GA
713 GCATTTTTCTTCGTCGGGGCACCA----TCG-G-AT---CGGAGAACCTGACCGACGGCATTGGG
* * * * *
5274087 ATTCCGACGAACGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTTGG
769 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * * * * *
5274152 CCCTTATATTGGCCCCCTCTTCGTCATCAAACCTCGAGAACCCACACTCCCTGAAAGG
834 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5274210 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
5274275 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAACAA
* *
5274340 AAGTACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * * *
5274405 TCGAACCACAAAAA-ATTTTGAAAATCATGAAAAATAGAAAACGAATCATCTTGCCATGAAACAT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
5274469 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGA
**
5274534 AATATGAAGATGTGCCTAAACCCACCTACCACAATATCGATCCACGGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
5274599 CTGGCCGGCTTAGTTCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
390 CTGGCCGGCGTAG-T---GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * *
5274664 AGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGAT-GGATAGCACGCA
451 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG-CAGCACGCA
* * * * * * * * *
5274728 GTGTGGGACCCGATCGATCCCCGACTTGTGCAT-CCGCCCCTCTAGTCGGCTGAACGCCCACACG
515 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
5274792 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC----C--A---AG---A-T-
580 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * **
5274843 -C-G-----GATC--A---GATCGAGGGTTGCGGCAGCACGTGCTGGGCTTTGGCATGTGCTGGT
645 CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * **
5274896 GCCACATTTTTCTTCGTCGGGTCACCATC-G-CCGGAGAACCTGACCGGCGACATCAGGGTTCCG
710 GCCGCATTTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTCC-
* * * * *
5274959 GA-GATC-AGGGCGCC-AGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCTTT
774 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
5275021 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAGA
839 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5275074 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5275139 TCAAATGGTCACAAAATTTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5275204 AAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCTGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *** ** * *
5275269 TCGAATGGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
5275333 CACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGA
* * * *
5275398 AAAATGAAGATGTGCTTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
5275463 CTAGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTT
390 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
5275524 CATTCCCAGTCTAAGATCAGACCAGACTGAGAGTTGTGACAGCAGGATTGACAACACGTAGAGGG
455 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * * *
5275589 GGACCCGACTGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCCAGCTAAGC-ACCACACGCTGGT
520 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
5275653 TTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGT
585 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
5275718 C-AGAGATCAGACTGGATCGAGGGTTACGGCAGCAGATGCTAGGCTTGGGCATGTGCTGGTGCCG
650 CTA-AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** **
5275782 CATTTTTCTTCACCGGGGCACCATTATCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGG
714 CATTTTTCTTCGTCGGGGCACC---ATC-G-G-ATCG---GAGAACCTGACCGACGGCATTGGGG
* ** * * *
5275847 TTTCGGTGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG-TCGGTAATTGG
770 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGG
* *
5275911 CCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
834 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5275969 GCATTTGAGATTTTACAGGTTTGCTGCCAGTATAGCCAATAAAGTGTCTGAAATGGGGACACTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAG--TAGCCATTAAAGTGTCTGAAATGGGGACACTTT
5276034 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCATGCCAAC
64 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCATGCCAAC
* * * * *
5276099 AAAACTACAATGACCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTTTAAAAAA
128 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
5276164 TCCTGAA--CCAAAAAGCGTTTTGAAAATTGAGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
193 TCCCGAACCCCAAAAAG-ATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5276227 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGC
257 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGC
* * *
5276292 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATTCACGGCTTGCGCATCCCGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
5276357 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTTGTTTTGTCGGTCGGCTTAGGCATACGGA
387 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
5276422 GTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
452 GTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * **
5276486 AGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGTCCCTCTGGCCATCTGAGCGCCCGCACGC
516 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
5276551 TCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
581 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * * * * * * *
5276616 CAGTCTATGATCGGACCAGACCAAGGGTTACAGCAGAACATGCTAGACTTGGGCATGTGCTGGTG
646 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
5276681 TCACATTTTTCTTCGTCGGGGCACCATC-G-CCGAAGAACCTGACCGACGGCATTGGGGTTCCGA
711 CCGCATTTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
5276744 CGATCGGGGGGGCTGGGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTA
776 CGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
5276809 TACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
840 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
5276861 GCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATA-TTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
5276925 TGCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-A
66 T-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACA
5276989 AAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
129 AAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
5277054 TCCCAAATCGCAAAAAG-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
193 TCCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
5277118 TTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GC
258 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGC
* **
5277182 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTAATCCACGGCTTGCGCATCCCGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
5277247 TCTCGGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATA
387 TCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * * * *
5277312 CGGAGTTCATTCCTAGACTAAGATCGGACTGGACTACCA--GTTGCGGTAGCAGGATCAGCAACA
448 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC--CGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * * * * * **
5277375 CACACAGGTGGACCAGGCCTATCCCCGGCCTGTGCATCTCACCCCTCTGGCCGGCTGATG-TTCC
511 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCC
* **
5277439 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCATAGTCTAAGCATACGGAGTT
575 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
5277504 CATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATTCTGGGCTCGAGCATGTG
640 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* *
5277569 CTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
705 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-G-A---TCGGAGAACCTGACCGACG
* * *
5277634 GCATTGGGGTTCC-AGCGATCGGGGGGGCCAGGGGGGTGTGCGGACATGATGTACGATGGGTGCT
761 GCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
**
5277698 GGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
825 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
5277763 GA
890 GA
* *
5277765 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * *
5277830 GCAAACGGTCACAAAATCTTGTATACTTCGATTTTTTACCTGAAATTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAA
* *** *
5277895 AAATACAGGGATCGTATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * * * * *
5277960 TCAAACTGCAACAAG-TTTTGAAAACCATGAAAAATAGAAAACTAGTCGTCTTTCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
5278024 CACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* * * *
5278088 AAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCACGTCTCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * ** * *
5278153 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGCTCGTTTCATCAATTGGCTTAGGCAAACGAAGT
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
5278218 TCATTCCCAGTCTATGGTCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * **
5278283 GGGACCCGGCCGATCCCCAGCTTGCGCATCCCACCCCTTTGGCCGACTGAGTGCCCTTACGCTCG
519 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
5278348 TTTCGTGGATTCACTTAGCCATACGGAGTTCATTCCCAATC-AAGCATACGGAGTTCATTCCCAG
584 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
5278412 TCTATGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTG
649 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
5278477 CATTTTTCTTCGCCGGGGCACCATCGCTCGAGCATCGCCGGAGAACCTGACTGACGACATT-GAG
714 CATTTTTCTTCGTCGGGGCACCA----TCG-G-AT---CGGAGAACCTGACCGACGGCATTGGGG
* *
5278541 TTCCGATGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
770 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
5278605 CCTTATATTGGCTCCGTATCCCTCATCAAACCTTGAGAACTCACACCACCTTAAAAA
835 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5278662 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5278727 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTGTTTTGGGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAA
* *
5278792 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTTCAAAAAAATTTTAAAAAAT
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
5278856 CCCGAACCGCAAAAAG-TTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACT
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * **
5278920 TCACATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAG
* * *
5278985 AAAAATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
5279050 TCTGGCCGACGTGGTGCCAGCCCATCCGCCCACCCGCCCGCTCGTTTCTTCGGTTGGTTTAGGCA
389 TCTGGCCGGCGTAGT----G--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * * * *
5279115 TACGGAGTTCATTCCGTGTCTAAGATCAGACCAGACTGAGAGTTGCAGCAGCAGGATTGACAGCA
446 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
5279180 CGTAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGACGGCTGAGCACCGG
511 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * **
5279245 CACGCTCATTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTATAAGCATACCAAGTTC
576 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** ** *
5279310 ATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT-TGA
641 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG-
* ** *** ** ** * * * * *
5279374 C-GTTG-AAC-TTGACCGACGGGGGGGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCC-
705 CTGGTGCCGCATTTTTCTTC-GTCGGG-GCAC-C---AT-CG-GAT-CG-G--AGAACCTGACCG
*** ** * * * **** ******* ** * **
5279435 -CTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCTTTAAAGAGCATTTGA
758 AC-GGCATTGG---GGT-T-CC-GA-C---GATCGGGGGGGC-CGGGGGGGT-GTGCGCACAT--
* * * ** * * * * * ****** **** **** *
5279499 GATTTTAC-A-GGTTTGCTGCCA-GTAGCCATTAAAGT-GTTTGGAAT-GGGGA-CATTTTTTTG
808 GA-TGTGCGATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA-AACCTCG
* **** ** *
5279558 A-AATGGTCACAAAATCTTGTACA
870 AGAA--CTCACACCCCCTTAAAGA
* * ** ** * * * * * * ***
5279581 -C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCATCAAAAAT-ACAAGGATCATGTCTA
1 GCATTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGCCAT-TAAAGTGTC--TGA-AATGGGGA
* *** ** * * ** * * *** ** **
5279641 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA----ACCGCAAAAAGT
58 -C-ACTTT--TTTC-AAA-T-GGT-C-ACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTT
* * * * * * * ** ** * *
5279702 TTTG-GAAAT-CCTGAA-AAATAGAAAACGAGTCATCTTGCCATGAAAGTTCACGTG----AA-G
113 TTTGTG-CATGCC--AACAAAAATACAAGGA-TCA-CGT-CTA-CCAAGTT-TGGGGCCAAAACT
* ** ** ** * ** * * ** * * * *
5279759 GCTTAAGGGACCATTGTATGAATTCAC-AAGCCATAAAAATGGCA-TTGGCACAT--AGAAAAAT
170 CCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCCCAAAAA--G-ATTTTGAAAATCGTGAAAAAT
* * * * * ** ** ***
5279820 -G--AA-GA-T-G---TACC-T-AAAC-CCACCT-ACCA-CCCT-ATCGATCCACGGCT-TGCGC
231 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA--AGGCTTAAGGGA-CCATTG-TATGAAT
* ** **** * * * ** * ** * ** **
5279869 AT-CCCGTCTC-T-CTGGTCGGCGTAGTGCCCGCCCGCCCGGTCATTTCGTCGGT-TGGTTTAGT
292 TTACAAG-C-CATAAAAAT-GGC--ATTG---GCTCG--CAGAAATAT-GAAGATGT-GCCTAAA
** ** * * * * * *** * * *
5279930 CATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTT-CATTTCCAGTCTAAGAT-TGGATCGG
345 CCCACCTA--CCA--CCCTA-TC-GATC-CACGG-CTTGCGCATCCCGTCT---CTCTGG-CCGG
* ** * * * ** ** * *** *
5279992 ATCG-AGGGTTACGGCAGCACATGCTGGGCTCG-GGCATGTGCTGGTGTCGCATTTTTCTTCAAC
398 --CGTAGTG-CCCGCCCGC-C-CGC-CCGCTCGTTTC--GT-C-GGT-TGGC-TTAGGCAT--AC
** ** ** * ** * * *
5280055 GG-GCCACCATCGTCGGAG-C-ATCATCGGAGAACCTGTTCG-GCGGCATTGGGGTTCCG-ACGA
449 GGAG--TTCAT--TCCCAGTCTAAGATC--AG-ACCAGACCGAG-GG--TTGCGG--CAGCAGGA
** ** * ** * * **** * * ** *
5280115 TCGGGGGGGC-CGGGGGGGTGTGCGCACATGA-TGTGTGATGGGTGTTG-GTA-CTTGGCCCTTA
502 TC--GGCAGCACGCAGAGG-G-G-G-ACCCGACCG-ATCCCCGG-CTTGCGCATC-CCGCCC--C
* ** * * ** * ** **
5280176 TATTGGCCCCCT-ATC-CCTCATCAAAC-CTCGAGAACTCACAGCCCCTTGA---AGAGCAT-TT
556 T-CTGGCCGGCTGAGCGCC-C-GC--ACGCTC--G-TTTCA-TG--GGTTGACTTAG-GCATACG
* * * * ** *
5280234 GAGATT--TT-ACAGGT-T-TGC-TAC-CAATTGCCATTAAACTGTCTGAA-AT-GG---GGA-C
609 GAG-TTCATTCCCA-GTCTAAGCATACGGAGTT--CATT-CCCAGTCT-AAGATCGGACTGGACC
*** * * * * * * * ** * *
5280286 -ACTTTTTTCAAATGGTCA-CAAAAT-CT-TG-TAC--ACTTCGAGTTTTTAGCTGAATTTTT-T
668 GA-GGGTTGC----GG-CAGC-ACATGCTGGGCT-CGGGCAT-GTGCTGGT-GCCGCATTTTTCT
** * * *** * * * * * *
5280343 T-GTGCATGCCAACAAAAG-TACAAGGATAACGTCT-AGC-A-AG-TTTGGGG--CC-A-AAAC-
723 TCGT-CGGGGCACCATCGGAT-C--GGAGAAC--CTGACCGACGGCATTGGGGTTCCGACGATCG
***** * ****** ** * ** ** *** *** * * ***** * * * *
5280397 -ACCTTCTGAAAAAAT-T--TTAAAAAAT-CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
782 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT--GCTGGTAC-TTGGCCCT-TATAT
* **** * * * * * *** *
5280457 TAGAAAACAAGT-CGTCTTGCCAA----GA-AACTTGACGTGA-AGGCTTAAGGGA
843 TGGCCCCCTA-TCCCTCAT-CAAACCTCGAGAAC-TCAC---ACCCCCTTAA-AGA
* * * * * * ** * *
5280506 CCA-TTGTATCAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGACGATGTGCCT-
1 GCATTTG-A-GATTTTAC-AG-G-T-----TTGC--TGCCA-GTAGCCAT-T-A--AAGTGTCTG
*** ** * * * * * *
5280569 AAA--CCCACCTACCATCCTATCGATCCATGGCTTGTGCATCCCATATC-TCTA-GCTT-GAAG-
49 AAATGGGGA-C-A-C-TTTTTTC-A--AAT-G---GT-CA--CAAAATCTTGTACACTTCG-AGT
* * * * * * * * **** **
5280628 GTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATGCAAAAATATGA
99 TTTTAGCTGA--ATT-T-T---TTGTGCATGCCAACAAAAAT-ACA-AGG-AT-CACGTCTACCA
* * * * * ** *** * * * *
5280690 AG-AT-GTGCCTAAAC-CC-ACC--TACCACCCT-----AT--CG-A-TCC---ACGACTTGTGC
153 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGA-TTTTGA
** ***** * **** ** ***** ** **
5280737 ATCTCGT-CTCTCTGGCCGGCGTAGTGCCCG-CCCGCCAACCCGCTCGTTTCGTCGGTTGGCTT-
217 AAATCGTGAAAAATAGAAAACG-AGT---CGTCTTGCCATGAAACT--TCACGT--GAAGGCTTA
* * ** * * * * * * *** **
5280799 A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGATCGG-ATGGGATCG-AGGGTTGCGACAGC
274 AGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAAT-GGCATTGGCTCGCAGAAATATGA-AG-
* * * * * ** * * * * * * * *
5280856 A-G-GATCGATA-GCACGTAGAGGGGGACTCGA-CTGATCCCCAGCATGTGCATCCCGCCCCTCT
334 ATGTG-CCTAAACCCACCT--A---CCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCT
* * ** ** *
5280917 -GCCTGGC-TGAGTGCCTGCACGCTTGTTTCATGCATACGGAGTTCATTCCCAGTCTAAGCATAC
392 GGCC-GGCGT-AGTGCCCGCCCGCCCG---CCCGC-T-C---G-T--TT--C-GTC---G-GT--
*** ** * *
5280980 AAACTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAGACC
435 TGGC-TTA-GGCA----------TACGGAGTTCATTCCCAGTCTAAGATC--A---GACCAGACC
* * * *
5281045 GAGGGTTGTGGCAGCA-CAT--GCTAGGCTCG-AGCATGTGTTGGTGACGC-ATTTTTCTTCG-T
483 GAGGGTTGCGGCAGCAGGATCGGC-A-GCACGCAG-A-G-G--GG-GACCCGA-----C--CGAT
* ** * ** * * * ** *
5281104 CGGGGCACCATCGCCGGAGCATCACCGTAGAACCTGATCGG-CGACATTG-GGGTTTCG-ACGAT
533 C----C-CC--GGCTTGCGCATC-CC---GCCCCT-CT-GGCCGGC--TGAGCG-CCCGCACGCT
*** * * * * * *** * ** **
5281166 CGAAGGGGCCAGGGGGTGTG-CGTA--CATGATGTGTGATGGGTGCGGGTACTTGGCCCTTATAT
582 C----GTTTCA-TGGGT-TGACTTAGGCAT-ACG-GAGTTCATTCCCAGT-CTAAG--C--ATA-
* **** * * ** * * **** **** * *
5281228 TGGCCCCCTATCCCTCA-TCAAACCTCAAGAACT-CACTC-CCCCTT-AAATAG--CAT-TTGAG
633 CGGAGTTC-ATTCC-CAGTCTAAGATC--GGACTGGAC-CGAGGGTTGCGGCAGCACATGCTGGG
* **** * * *** ****
5281286 ATTTTACAGGTTTGCTGTCAGTAG-C-CATTAAAGTGTCTAAAAT-GGGG-A-CACTTTTTTC--
693 CTCGGGCA--TGTGCTG---GT-GCCGCATT----TTTCT-TCGTCGGGGCACCA-TCGGATCGG
** *** * * * **** * ****** *
5281344 A-AA--TGGTC-ACAAAATCT--TG-TAC-AC-TTCGAGTTTTTAGCTGAATTTTTTTATGCATG
746 AGAACCTGACCGACGGCAT-TGGGGTTCCGACGATCG-G--GGGGGCCG--GGGGGGTGTGC--G
* ** * * * * * * * ** **** ***
5281400 CCAACA-AAAATAC-AAGGATCGC-GTCTACCAAGGTTGGGGCC-AAAACTCTTTCCGAAGAAAT
803 -C-ACATGATGTGCGATGGGT-GCTG-GTA-C----TT-GGCCCTTATA-T-TGGCCCCCTATCC
* * ** * * * * *****
5281461 TTTAAAAAATCTCGA-ATCGCAAAAAGTTTTAAA-A
856 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *** * * * * * *
5281495 --ATTGTGAAAAATAGAACATGAG-TCGTCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--G
1 GCATT-TG--AGATTTTACA-G-GTTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGG
* * * * * * ** * *** * * ***
5281552 GGAC-CATTGTAT-GAAT--TTAC--AAGCTAG-AC-CGGCGACATTGGCATGCAGAAATATGAA
55 GGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTA-GCTG-AATTTTTT
** ** * * * * * * ** *
5281609 GATG--TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCACTCTGCCC
116 G-TGCATGCC--AACAAAAATA-CA----A-GGAT-CACGTC-TAC-CA---AGT--TTGGGGCC
** * ** ***** ***** ** ** ** * ** ***
5281672 GACGTAGTGCCCGCCCG-CCTGCTCGTTTCATCGGTTGGCTTA-GGCATACGGAGTTCATTCCCA
164 -A-AAACT--CCTTCCGAAAAAAT--TTT-AAAAAATCCCGAACCCCAAAAAGA-TT--TTGAAA
* * * * *** * **
5281735 GTC-T--AAGATCAGACCAAATCGA-T-G-GTTGCAGCA-GTAGGATCGACAGT--ACGCAGAAG
219 ATCGTGAAAAAT-AGA--AAA-CGAGTCGTCTTGC--CATGAAACTTC-AC-GTGAAGGCTTAA-
** * ** ** ****** ** * * * **
5281791 GGGACC-CGGCCGATCCCCG-GCTTACGCATCCCACCCCTTTGGCCGGCTGAGCGCCCACACGCT
275 GGGACCATTG--TAT----GAATTTA--CAAGCCATAAAAATGG-C-ATTG-GCTCGCAGA-AAT
** ** ** ** * * ** * * * *
5281854 -TG--TTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTA-AGCTTACGAAGTTCA
328 ATGAAGAT-GTGCCTAAACCCA--CCTAC-CACCCT-A-T-CGA-TCCACGGCTT--G-CG--CA
* * * * * ** ** * ** * *
5281914 TTCCCAGTCTAAGATCAAACCGGACCGAG-GTTTGTGGCAACACATGCTGGGCTCGAGCATGT-G
380 -TCCC-GTC-----TC--TCTGG-CCG-GCG-TAGT-GC-CCGCCCGC-CCGCCCGCTCGTTTCG
* * *** * * * ** *
5281977 CTACTGCT-GCATTTTTCTTCACCGAG-GCA---CCATCGTCGGAGCATCGTCGGAGAACCTGAC
430 -T-CGGTTGGC-TTAGGCAT-ACGGAGTTCATTCCCA--GTCTAAG-A---TC--AG-ACCAGAC
* * * ** *** * ***
5282037 CG-GTGGCATTGGGGTTCCG-ACGATCGGGGGC-C-C-G-GGGGGTGTGCGTACATGATGTGCGA
482 CGAG-GG--TTGCGG--CAGCAGGATCGGCAGCACGCAGAGGGGG-ACCCG-AC-CGATCCCCG-
** * ** * * ** * * **
5282096 TGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCT-ATC-CCTCATCAAAC-CTCGAGAACTCA
538 -GCTTGC-GCAT-C-CCGCCC--CT-CTGGCCGGCTGAGCGCC-C-GC--ACGCTC--G-TTTCA
****** * ** * * ** * * **
5282157 --CACCCCCTAAAGAGCAT-TTGAGATT--TT-ACAGGTTTGCTGCA-A-GTAG-CCATT-AAAG
589 TGGGTTGACT-TAG-GCATACGGAG-TTCATTCCCA-GTCT-AAGCATACGGAGTTCATTCCCA-
* **** ** * * ** * **
5282212 TGTTTGAA-ATGCGGACACTTTTTTC-A--AATG-GTCA-CAAAAT-CTTGTACACTTTG-A-GT
648 -GTCT-AAGAT-CGG--AC-TGGACCGAGGGTTGCGGCAGC-ACATGC-TGGGCTC-GGGCATGT
* *** * * ** * * *** ** *
5282268 -TTTAAGCTGAATTTTT-TT-GTACATGCCATCA-AAAATACAAGGATCACGTCT-ACC-A-AG-
704 GCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGGAT-C--GGAGAAC--CTGACCGACGGC
* * * ** *** ******* * **** * *** * *** **
5282325 -TTTGGG-ACCAAAAATC----CTTCCAAAAAAATTTAAAAAAATCCCGAACCGTGAAAAGTTTT
763 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT---GATGTGCGATGGGTGCT
** * **** * * * ** * * * * **
5282384 GAAAAACGTGAAAAATAGAAATTGAGTCGTCT-T-GC-CATGAAACTTC-ATG---TGA-A--GG
825 G--GTACTTG-GCCCT-TATATTG-GCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCC
*
5282439 CTT-AAGG
884 CTTAAAGA
* * * * ** *
5282446 GACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCC
1 G-CATTTG-A-GATTTTAC-AG--GT-----TTGC--T-GC-CAGTAGCCAT-T-AA-A-GTGTC
*** ***** ** * *** ** * * * * *
5282510 T-AAA--CCCAC-CTACCACCCTATCGATC-C-ACGGCTTGCGCA-TCCCA-TCTCT--CTG-GT
47 TGAAATGGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** * ** ******* ** * **** * *
5282564 TGGCGTAGTGC-TCGCCCGCCCGCCCGC-CCGCTCATTTCGTCT-GTTGGCTT-AGG-CATACAG
111 T--TTTTGTGCAT-GCCAACAAAAATACAAGGATCA---CGTCTACCAAGTTTGGGGCCA-A-A-
* * * * * * * * * * ** *
5282624 AGTTCATTCC-----CAGTCT-AAGATTGGACCGAA--CC--AAGGGTTGCGGCAGCAGGATCGA
167 A-CTCCTTCCGAAAAAATTTTAAAAAAT--CCCGAACCCCAAAAAGATT-TTG-A--A-AATCG-
*** * * * * ** ***
5282679 TAGCACGCAGAGGAGGACCTGATCGATCCCCGGCTTGTGTATCCCGCCCCTCTGGC-CGACTG-A
223 T-G-AAAAATA-GA-AAAC-GA--G-T---CGTCTTG-CCAT---GAAACT-T--CACG--TGAA
** * * ** * * * *** *
5282742 GCGCTCGCA-CG-CTCATT-TCGTGGGTTGACTTAGGCATACGGA-GTTCATT--C-C-CAG---
268 G-GCT-TAAGGGAC-CATTGT-ATGAATTTAC-AAGCCATAAAAATG-GCATTGGCTCGCAGAAA
* * *** * * ** * * * * **
5282796 TCT-AAGGATATG---AAGTTCA-TTCCCAGTCTA-AGAT-CA-GAC---CGGA-CCGAGGGT-T
327 TATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCT
** * ** * ** ** * * *
5282848 AAGG-CAGCACA-TG-CTGAGCGCCCGCAGGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
390 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
5282910 CATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGTAGCAAGG-TCGACAGCACGTAGAG
455 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGC-AGGATCGGCAGCACGCAGAG
* * * * * *
5282973 GGGGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCGCGCTC
518 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * ** *
5283038 GTTTCATGGGTCGACTCAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
583 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
5283103 GTCTAAGATCGGACCGGACCGAGGTTTGCGGCAGCACATGCTGGGATCGAGCATGTGCGGGTGCC
648 GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** * *
5283168 ACATTTTTTTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGATCCTGACCGGCGGCATTGGG
713 GCATTTTTCTTCGTCGGGGCA-C--CATC-G-G-A---TCGGAGAACCTGACCGACGGCATTGGG
*
5283233 GTTCC-AGCGATCGGGGGGTCGCGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
769 GTTCCGA-CGATCGGGGGG--GC--CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* ** * *
5283297 CTTGGCCCTTGTATTGTTCCCCTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGA
829 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5283360 GCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTGTCTGAAATAGGGACAGTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5283425 TGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAACA
66 T-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACA
* ** *
5283490 AAAATGCAAGGATCACAACTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT
129 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* **
5283555 CCC-AAACCGTAAAAG-TTTTGAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAA
194 CCCGAACCCCAAAAAGATTTTG-AAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAA
* * *
5283618 CTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
257 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGC
5283683 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * * * * ** *
5283748 TCTTTGGCCGGTATAGTGCCCGCCCCCCCGCTCGCTCGTTTCATCAGTTGGCAAAGGTATACGGA
387 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
5283813 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAACAGGATCGGCAGCACACAGA
452 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
*** ** * * *
5283878 TACGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCTCCTCT-GCCTGGCTGAGCGACCGCACGC
517 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGC
* *
5283942 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAAGCATATGGAGTTCATTCC
581 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * *
5284006 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCGATCTAAG-ATC
646 CAGTCTAAG-AT-CGGA---C--T----G-----G---ACCGAG--GGTT-GCG-GC--AGCA-C
* * *
5284070 GGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCAAATTTTTCT
685 --AT--G--C-TGGGCT-CG---G-GCATG-T--GCT---G---GTGCC---G-C--ATTTTTCT
* * *
5284135 TCGTCGGGGCACCATC-G-TCGGAGAACCTAACCGACGGCATTGGGGTTCTGATGATC-GGGGGG
723 TCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
5284197 CC-AGGGGGTGTGTGCACATGATGTGCGATGAGTGCTGGTACTTGGCCATTATATTGGCCCCCTA
788 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5284261 TCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGA
853 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * *
5284300 GCATTTGAGATTTTATAGGTTTACTACC-GATAGCCATTAAAGTGTCTGAAATAGGGACAGTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* ** *
5284364 TTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACACCAAA
65 TT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAAC
* *
5284429 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAA
128 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** ** * *
5284494 TCTCGAACCGTAAAAAGA-TTCAAAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGCCATGAAAC
193 TCCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
***
5284558 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATTTGCCATAAAAATGGCATTGGCAT-GC
258 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGC
*
5284622 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
5284687 TCTCTGGCCGACGTA--G--AG---G-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
387 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * ** * * * *
5284744 GTTCATTCGAAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAGGATTGACAGCACACAGA
452 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * *
5284809 GGGGGACCCGGTCC-ATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCTGCACGC
517 GGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
5284873 TCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TCATTCC
581 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * ** * *
5284937 CAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCACATGCTGGCCTCGAGCATGTGCTGGTG
646 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
5285002 TCGTATGTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGATCGACGGCATTA
711 CCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-G-A---TCGGAGAACCTGACCGACGGCATTG
* *
5285067 GGGTTCCGACGATC-GGGGGG-C-TGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTT
767 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
5285129 GGCCCCTATATTGGCCCCTTATCCCTCATCAATCCTC-AGGAACTCACACCCCCTTAAAGA
832 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGA
* * * * *
5285189 GCACTAGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGAGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5285254 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAAC-A
* *
5285319 AAAATACAAGGTTCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCC-AAATAAATTTTAAAAAA
129 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAA
* ** ** * *
5285383 TCTCGAACCGTAAAAA-ATTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
193 TCCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
5285447 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GC
258 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGC
* * * * * **
5285511 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCAATCCACGGCCTGTGCATCCTATC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
5285576 TCTCTGGTCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGCCTCAGGCATA
387 TCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * *
5285641 CGGAGTTCTTTCCCAGTCTAACATCAGACTGGACCGATGGTTGCGCCAGTAGGATCGGCAGCACG
448 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * ** * *
5285706 TAAAGGGGGACCTGACCTATCCCCGGCTTGCGCATCCCGCTTCTCTGGCCAGTTGAGCGCCCGCA
513 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
5285771 CGTTTC-TTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGAAGTTCA
578 CG-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
** * *** * * * *
5285835 TAACC-TTCTAAGATCGGACCAAATCGAGGGTTGCGACAGCACTTGCTGGGCTTGGGCATGTGCT
642 TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * **
5285899 GCTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACAAC
707 GGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT---CGGAGAACCTGACCGACGGC
* * * ** *
5285964 ATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTCTGCGCATATGATGTGTTATGGGTGTTGGT
763 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* **
5286028 ACGTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
828 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
5286092 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
5286157 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5286222 AAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCATCCAAAAAAATTTT-AAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * *
5286286 CCGAACCGTAAGAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
5286350 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGA
5286415 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * * *
5286480 CTAGCCGATGTAGTAACTGCCCGCCTGTCCGCCCTCTCATTTCATCGGTTGGCTTAGGCATACAG
390 CTGGCCG--G-CGT-AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * ** * * * * *
5286545 AGTTCATTCCCATTC-AAGATCAAACCAAACCAAGGGTTGCAACAACAAGATTGGTAGCACGTAG
451 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * * ** *
5286609 AGGGGGACCCGATCGATCCCCGACTTTCGCATCCCGGCCCTCTTGCTAGCTGAGCGCCCGTACGC
516 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
5286674 TCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
581 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** *
5286739 CAGTCTAAGATTGGACTGGACTGAGGGTTTTGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTG
646 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
5286804 CCGCATTTATCTTTGTCGGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGACGGCTTTG
711 CCGCATTTTTCTTCGTCGGGGCACCATC----G-G-AT---CGGAGAACCTGACCGACGGCATTG
**
5286869 GGGTTCCGGA-GATCGATGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
767 GGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
5286932 TGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGA
831 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5286992 GCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5287057 TCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* ** * * *
5287122 AAGTA-AATGGATCACGGGTACCAAGTTTGGGACCAAAAATTCTTCCGAAAAAATTTTAAAAAAT
130 AAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** *
5287186 CCCGAACCGTAAAAAG-TTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTAC-TGCCATGAAAC
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAAC
* * * * * *
5287249 TTCACGTGAACGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGACACTGGCACGTA
258 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCA
* * * * *
5287314 GAAATCTAAAGATGTGCCTAAACGCACCTACCACCCTATCGCTCCATGGCTTGCGCATCCCGTCT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
5287379 CTCTGGCCGGCGTAGTGCCCGCCCACCTGGCTGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
388 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** *
5287444 TTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAATACACAGAG
453 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
** * *
5287509 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTC
518 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
5287574 GTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCA
583 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * ** * *
5287639 ATCTAAGATTGGACCGGATTGAGGGTTGCGACAGCACATGATGGGCTCGGGCATGTGCTGGTGCC
648 GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * **
5287704 GCATTTTTCTGCGCCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAACATTGGG
713 GCATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT---CGGAGAACCTGACCGACGGCATTGGG
* * *
5287769 GTTCCGACGATCGGGGGGGCCGGGGGGTTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGG
769 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
** *
5287834 CCCTTATATTGGCCCCCTATCCCTCA-CAAACCTAAAGAACTCACA-CCCTTTAAAGA
834 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5287890 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5287955 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5288020 AAATACAAGGATCACGTCCACCAGGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** ** * *
5288085 CCGAACCGGAAAAAG-TTTCAAAAATCGTGCAAAATACAAAACGAGTCGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
**
5288149 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* *
5288213 CAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * ** *
5288278 TCTTGCCGGCGTAGTGCCCG-CCGACCG---GCTCTTTTTGTCAGTTACCTTAGGCATACGAAGT
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * **
5288339 TCATTCCCAGTCTAAGATCAGACCAGACTGACGGTTGCGGCAGCAGGATCGGTAGCACGTGGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * *
5288404 GGGACCAGACCAATCCCCGGCATGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCACACGCTCA
519 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
5288469 TTTCGTTGGTTGACCTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTTATTCCCAG
584 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * *
5288534 TCTAAGATCAGACCGGACCAAGGGTTGTGGCAACACATGCTAGGCTCGGGCATGTGCTAGTGTCG
649 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
5288599 TATTTTTCTTCGTCAGGGCA-CATTTGCCGGAGCATCGTCAGAGAACATGACC-AGCGACATTGG
714 CATTTTTCTTCGTCGGGGCACCA--T--C-G-G-ATCG---GAGAACCTGACCGA-CGGCATTGG
* * *
5288662 GGTTCCGACGAT---------CGGGGGGGTGTGCACAAATGATGTGTGATGGGTGCTGGTACTTG
768 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
5288718 GCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAACTAACACTCCCTTAAAGA
833 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
5288777 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5288842 TCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCCGAATTTTCTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAACAA
* * *
5288907 AAATACAAAGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** ** * *
5288972 CCGAATCGTAAAAAG-TTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
5289036 CACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCAT-GTAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* * *
5289100 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCAACCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * * *
5289165 TCTGGCCGACACAGTGCCCGCCCGCCCGCCCTCTCATTTCGTCAGTTGGCTTAGGCATACGGAGT
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
5289230 TCATTCCCAATCGAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * ** *
5289295 GGGACCC-AGCCGATCCTCGGCTTGCACATCTCG-CCCTCTGGCCAACTGAGCGCCCGCATGCTC
519 GGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
5289358 CTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCA
583 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * ** * *
5289423 GTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCTATGCTCGAGCATGTACTGGTGCC
648 GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
*
5289488 GTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGGG
713 GCATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT--C-GGAGAACCTGACCGACGGCATTGGG
* * * * *
5289553 GTTCCAACGATCGGGGGGGCTGGAGGGGTGTTCGCACATGATGTGCAATGGGTGCTGGTACTTGG
769 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
5289618 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
834 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
5289676 GCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5289741 TCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTTTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5289806 AAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** ** * *
5289871 CCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
5289935 CACGTGAAGGCTTAAGGGAGCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* *
5289999 AAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *** **
5290064 TCTGGCCGACGTAATGCTTACCCGCTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
5290129 TCATTCCCAGTCTAA-ATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGG
454 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * ** * *
5290193 GGGACCCGACCGATCCTCGGCTTGCACATCCCACCCCTCTGGCCGGTTCAGCGTTCGCATGCTCC
519 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * ** * *
5290258 TTTCGTGGGCTGACTTAGGCATACTAATTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
584 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *** * *
5290323 TCTAAGAT-TGAGCCAAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
649 TCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * *
5290387 GCATTTTTCTTCACCTGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
713 GCATTTTTCTTCGTCGGGGCACCAT---C-G-G-A---TCGGAGAACCTGACCGACGGCATTGGG
* ** * * *
5290452 GTTTCGACGATCGGGGGGGCCAGGGGCAGTGTGCGCACATGATGTGCGATGGGTACTAGTACGTG
769 GTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
**
5290517 TTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
833 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
5290576 GCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5290641 TCAAATGGTCACAAAATCTTGTACGCTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCATA-A
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA-ACA
* ** *
5290705 AAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAGACTCCTTCCGAAAAAATTTTAAAAAAT
129 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** ** * * *
5290770 CCCGAATCGTAAAAAG-TTTAAAAAATCGTGACAAATAAAAAATGAGTCGTCTTGCCATGAAACT
194 CCCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
5290834 TCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAAAT-GCA
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-GCTCGCA
*
5290898 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
5290963 CTCAGG-CGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAT
388 CTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * ** * * * * *
5291027 GGTGTTCATTCACAATCTAAGATTGGATCGGATCGATGGTTGCGGCAGCAGGATCGGCAGCACGT
449 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * * * * *
5291092 AGAGTGAGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCTTCGGGCCGGCTGAGCGCCTGCAC
514 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* ** * *
5291157 GCTCGTTTCGTGTTTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCCTACGGAGTTCATT
579 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
5291222 CCCAGTCTAAGATCGGA-TCGGACCAAGGTTTGAGGTAGCACATGCTGGGCTCGGGCATGTGCTG
644 CCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** ** *
5291286 GTGATGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGTGACA
708 GTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-G-A---TCGGAGAACCTGACCGACGGCA
* * *
5291351 TTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTACGCACAAGATGTGCGATGGGTGCTGGTA
764 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5291415 CTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTGACACCCTCTTAAAGA
829 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
5291477 GCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5291542 TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * *
5291607 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATACTTCCGAAAAAATTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** ** ** * *
5291672 TTGAACCGTAAAAAG-TTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
5291736 CACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAGGCCACAAAAATATCATTGGCAT-GCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGCAG
* *
5291800 AAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
5291865 TCTAGTCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATATG
389 TCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * *
5291930 GAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGGTTTAGGTAGTAGGATCGACAGCACGCA
450 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * * * *
5291995 TGA-CGGGTCCC-AGCAGATCCCCAGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCA
515 -GAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
5292058 TGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAGTTTAT
578 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
5292123 TCCCAGTCTAAGATCAGACCGGACCGATGGTTACGGTAGCACATACTAGGCTCGGGCATGTGCTG
643 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
5292188 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACATGACCGACGGCA
708 GTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-G-ATCG--G-AGAACCTGACCGACGGCA
* * *
5292253 TTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGTTA
764 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5292317 CTTGGCCCTTATAATAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
829 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * **
5292380 GCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCGATTAAAGTGTCTG-CGTGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* ** * * *
5292444 TCAAATGGTCACAAAATCTTGTGCACTTTTAATTTTTAGCTGAATTTTTTTATGCATGCCAATAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * * * *
5292509 AAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAATCTGCTTTCGAAAAAAGTTTAAAAAATC
130 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** ** ** * * *
5292574 TTGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAATTGTCTTGCCACGAAACTT
195 CCGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ** *
5292638 CACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GAGCATTGGCAGGTAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-GCATTGGCTCGCAG
** *
5292702 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCACATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
5292767 TCTGGTCGGCATAGTGCCCGCCTGCCCGCCCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACA
389 TCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** ** **
5292832 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCCACAGCAGGATCGATAGCACGCA
450 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * ** *
5292897 GAGGGTGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCAAGCCGGCTGAGCGCCCGTACG
515 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
5292962 CTCATTTTAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
580 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * * * *
5293026 CTATTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCACATGCTGGGCTTGGCCATGCGCTGGT
645 CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * **
5293091 GTCACTTTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATCACCAGAGAACCTAACCGGTGGCATT
710 GCCGCATTTTTCTTCGTCGGGGCACCA---TC-G-G-AT---CGGAGAACCTGACCGACGGCATT
** * * * *
5293156 GGGGTTCCGACGATCGAAGGGGTC-GGGGGGTGAGCGCACATGATTTGCAATGGGTGCTGGTACT
766 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
5293220 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
831 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5293281 GCATTTGAGATTTTAAAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
5293346 TCAAATTGTCACAAAATCTTGTACAC
66 TCAAATGGTCACAAAATCTTGTACAC
5293372 ATTTTTCTTC
Statistics
Matches: 20986, Mismatches: 3885, Indels: 2837
0.76 0.14 0.10
Matches are distributed among these distances:
852 1 0.00
853 1 0.00
854 149 0.01
856 164 0.01
857 18 0.00
858 1 0.00
859 2 0.00
860 3 0.00
861 1 0.00
862 5 0.00
863 7 0.00
864 456 0.02
865 32 0.00
866 82 0.00
867 3 0.00
868 4 0.00
869 95 0.00
870 410 0.02
871 3 0.00
872 6 0.00
874 88 0.00
875 128 0.01
876 52 0.00
877 4 0.00
878 5 0.00
879 18 0.00
880 11 0.00
881 480 0.02
882 130 0.01
883 226 0.01
884 273 0.01
885 124 0.01
886 40 0.00
887 407 0.02
888 211 0.01
889 427 0.02
890 588 0.03
891 191 0.01
892 391 0.02
893 346 0.02
894 863 0.04
895 183 0.01
896 57 0.00
897 1007 0.05
898 1390 0.07
899 1268 0.06
900 1422 0.07
901 2262 0.11
902 2290 0.11
903 666 0.03
904 896 0.04
905 349 0.02
906 313 0.01
907 58 0.00
908 36 0.00
909 46 0.00
910 15 0.00
911 11 0.00
912 13 0.00
913 9 0.00
914 4 0.00
915 10 0.00
916 24 0.00
917 22 0.00
918 14 0.00
919 32 0.00
920 23 0.00
921 18 0.00
922 12 0.00
923 16 0.00
924 28 0.00
925 8 0.00
926 18 0.00
927 58 0.00
928 32 0.00
929 26 0.00
930 39 0.00
931 213 0.01
932 35 0.00
933 10 0.00
934 18 0.00
935 29 0.00
936 16 0.00
937 23 0.00
938 21 0.00
939 175 0.01
940 306 0.01
941 23 0.00
942 19 0.00
943 17 0.00
944 21 0.00
945 37 0.00
946 55 0.00
947 20 0.00
948 22 0.00
949 26 0.00
950 28 0.00
951 21 0.00
952 30 0.00
953 34 0.00
954 32 0.00
955 15 0.00
956 19 0.00
957 28 0.00
958 10 0.00
959 15 0.00
960 22 0.00
961 32 0.00
962 31 0.00
963 26 0.00
964 15 0.00
965 10 0.00
966 12 0.00
967 6 0.00
968 7 0.00
969 10 0.00
970 11 0.00
971 11 0.00
972 10 0.00
973 15 0.00
974 9 0.00
975 13 0.00
976 7 0.00
977 5 0.00
978 11 0.00
979 20 0.00
980 10 0.00
981 19 0.00
982 16 0.00
983 2 0.00
984 2 0.00
985 2 0.00
986 3 0.00
987 7 0.00
988 7 0.00
989 20 0.00
990 6 0.00
991 21 0.00
992 14 0.00
993 20 0.00
994 14 0.00
995 12 0.00
996 7 0.00
997 9 0.00
998 2 0.00
999 3 0.00
1000 2 0.00
1001 1 0.00
1002 5 0.00
1003 6 0.00
1004 10 0.00
1005 5 0.00
1006 5 0.00
1007 1 0.00
1008 1 0.00
1009 3 0.00
1010 5 0.00
1011 2 0.00
1012 1 0.00
1014 1 0.00
1016 1 0.00
1018 2 0.00
1019 2 0.00
1020 7 0.00
1021 3 0.00
1022 4 0.00
1023 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCCCAAAAAGATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
Found at i:5268593 original size:26 final size:25
Alignment explanation
Indices: 5268563--5268614 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
5268553 GTTGACTTAG
*
5268563 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
5268589 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
5268614 G
1 G
5268615 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:5271245 original size:26 final size:26
Alignment explanation
Indices: 5271216--5271267 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5271206 GTTGACTTAG
5271216 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5271242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5271268 AATAAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5276608 original size:26 final size:26
Alignment explanation
Indices: 5276572--5276622 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5276562 GTTGACTTAG
5276572 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5276598 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
5276623 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5277496 original size:26 final size:26
Alignment explanation
Indices: 5277466--5277518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5277456 GTTGACTTAG
* *
5277466 GCATACGTAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
5277492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5277518 G
1 G
5277519 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5278855 original size:897 final size:898
Alignment explanation
Indices: 5274814--5279370 Score: 5814
Period size: 897 Copynumber: 5.1 Consensus size: 898
5274804 GTTGACTTAG
* * * * * *
5274814 GCATACAGAGTTCATTCCCAGTCCAAGATCGGATCAGATCGAGGGTTGCGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** *
5274879 CTTTGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GG-------G-TC-ACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGAGCATCGCCGGAGA
* * ** * * *
5274933 ACCTGACCGGCGACATCAGGGTTCCGGA-GATC-AGGGCGCCAGGGGGTGTGCGCACATGGTGTG
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* **
5274996 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
5275061 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5275126 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * *
5275191 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCGAAAAA
* ** * * *
5275256 ATTTTAAAAAATCTCGAA-TGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTGGTCT
454 ATTTTAAAAAATCCCGAACT-GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5275320 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
5275385 ATTGGCACATAGAAAAATGAAGATGTGCTTAAACCCACTTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5275450 GCATCCTGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
5275511 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGAGTTGTGACAGCAGGATTGAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGAC
* * * * * * * *
5275576 AACACGTAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCC-AGCTAAGC
778 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGC
* * * *
5275640 -ACCACACGCTGGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
5275696 GCATATGGAGTTCATTCCTAGTC-AGAGATCAGACTGGATCGAGGGTTACGGCAGCAGATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * ** ** *
5275760 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT-TATCGGAGCATCGCCAGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTC-GAGCATCGCCGGA
** * ** * *
5275824 GAACCTGACCGGTGGCATTGGGGTTTCGGTGATCGGGGGGACCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATG
* * *
5275889 TGTGATGGGTG-TCGGTAATTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
193 TGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
5275953 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATAGCCAATAAAGTGTCT
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG--TAGCCATTAAAGTGTCT
5276018 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
5276083 TTGTGTGCATGCCAACAAAACTACAATGACCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
385 TT-TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCG
* * *
5276148 AAAAAAGTTTAAAAAATCCTGAAC--CAAAAAGCGTTTTGAAAATTGA-GAAAAATAGAAAACGA
449 AAAAAATTTTAAAAAATCCCGAACTGCAAAAA--GTTTTGAAAA-TCATGAAAAATAGAAAACGA
*
5276210 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
5276275 AAATGGCATTAGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATTCAC
576 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
5276340 GGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTTGTTTTGTCGGT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
5276405 CGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTTGCGGCAGTA
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGAGTTGCGGCAGCA
* * *
5276469 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGTCCCTCTGGCC-
770 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
5276533 ATCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 A-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5276598 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCAAGGGTTACAGCAGAACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
5276663 CTTGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGC-C--G-A-------AGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGAGCATCGCCGGAGA
**
5276717 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGAGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CAGGG-GGTGTGCGCACATGATGT
* * *
5276782 GTGATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
5276847 CACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5276912 TGGGGATA-TTTTTTGCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
*
5276976 TGTGCATGCCAAAAAATATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCGAA
* * *
5277040 AAAATTTTAAAAAATCCC-AAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
451 AAAATTTTAAAAAATCCCGAACT-GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
*
5277104 TCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * **
5277169 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTAATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
5277234 TGCGCATCCCGTCTCTCGGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCCCGTTTGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGT
* * * ** * * *
5277299 TGGCTTAGGCATACGGAGTTCATTCCTAGACTAAGATCGGACTGGA-CTACCAGTTGCGGTAGCA
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GAGTTGCGGCAGCA
* * * * * * * * * *
5277363 GGATC-AGCAACACACACAGGTGGACCAGGCCTATCCCCGGCCTGTGCATCTCACCCCTCTGGCC
770 GGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* ** * **
5277427 GGCTGATG-TTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCATAGTCTA
834 GACTGA-GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5277491 A
898 A
* ** *
5277492 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
5277557 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGC-CGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTC-GAGCATCGCCGGAG
*
5277621 AACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCCAGGGGGGTGTGCGGACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCA-GGGGGTGTGCGCACATGATG
* ** *
5277685 TACGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
5277750 ACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
5277815 ATGGGGACACTTTTTGCAAACGGTCACAAAATCTTGTATACTTCGATTTTTTACCTGAAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTT
* ***
5277880 TGTGCATGCCAAAAAAAATACAGGGATCGTATCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCGAA
* * * * * *
5277944 AAAATTTAAAAAAATCTCAAACTGCAACAAGTTTTGAAAACCATGAAAAATAGAAAACTAGTCGT
451 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
5278009 CTTTCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTGTAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5278074 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * **
5278139 GCACGTCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGCTCGTTTCATCAATTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
5278204 TAGGCAAACGAAGTTCATTCCCAGTCTATGGTCAGACCGGACCGAGGGTTGTGGTAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCG
* * * *
5278269 ACAGCACACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCACCCCTTTGGCCGACTGAG
776 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* ** * * * * *
5278334 TGCCCTTACGCTCGTTTCGTGGATTCACTTAGCCATACGGAGTTCATTCCCAATC-AA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5278391 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
5278456 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCTCGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGAGCATCGCCGGAGA
* * * *
5278521 ACCTGACTGACGACATT-GAGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* *
5278585 GATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCGTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
5278650 CCACCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5278715 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTGTTTTGG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGT
* * *
5278780 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTTCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCGAAAAAA
* * *
5278845 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTCG
455 TTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
5278910 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
5278975 TGGCACATAGAAAAATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5279040 ATCCCGTCTCTCTGGCCGACGTGGTGCCAGCCCATCCGCCCACCCGCCCGCTCGTTTCTTCGGTT
650 ATCCCGTCTCTCTGGCCGGCGTAGT----G--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * *
5279105 GGTTTAGGCATACGGAGTTCATTCCGTGTCTAAGATCAGACCAGACTGAGAGTTGCAGCAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGGCAGCAGG
* * * * * *
5279170 ATTGACAGCACGTAGAGGGGGA-CCGGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGACGG
772 ATCGACAGCACGCAGAGGGGGACCCGG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * * *
5279234 CTGAGCACCGGCACGCTCATTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTATAA
836 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * *
5279297 GCATACCAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
5279362 CTCGGGCAT
66 CTCGGGCAT
5279371 TGACGTTGAA
Statistics
Matches: 3185, Mismatches: 407, Indels: 142
0.85 0.11 0.04
Matches are distributed among these distances:
881 1 0.00
882 83 0.03
884 2 0.00
889 13 0.00
890 320 0.10
891 48 0.02
892 129 0.04
893 42 0.01
894 279 0.09
895 130 0.04
896 9 0.00
897 762 0.24
898 28 0.01
899 137 0.04
900 166 0.05
901 144 0.05
902 144 0.05
903 2 0.00
904 453 0.14
905 226 0.07
906 67 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5279966 original size:26 final size:26
Alignment explanation
Indices: 5279930--5279981 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5279920 TTGGTTTAGT
5279930 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
5279956 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5279982 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5280749 original size:131 final size:132
Alignment explanation
Indices: 5280491--5280739 Score: 428
Period size: 131 Copynumber: 1.9 Consensus size: 132
5280481 AAACTTGACG
* *
5280491 TGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
* * * *
5280556 TGACGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGTGCATCCCATATCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCATATCTCTAG
5280621 CT
131 CT
*
5280623 TGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
1 TGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
5280687 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATC
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATC
5280740 TCGTCTCTCT
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
131 104 0.95
132 6 0.05
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (132 bp):
TGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCATATCTCTAG
CT
Found at i:5281016 original size:26 final size:26
Alignment explanation
Indices: 5280948--5281026 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
5280938 CTTGTTTCAT
5280948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** * *
5280974 GCATACAAACTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5281000 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5281026 G
1 G
5281027 ATCAGACTGG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5281913 original size:26 final size:26
Alignment explanation
Indices: 5281877--5281926 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5281867 GACTTAGGCA
*
5281877 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
5281903 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
5281927 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:5282514 original size:893 final size:892
Alignment explanation
Indices: 5280623--5282863 Score: 2933
Period size: 893 Copynumber: 2.5 Consensus size: 892
5280613 ATCTCTAGCT
5280623 TGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA-AAAT
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAGAAAT
* * *
5280686 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCTCGTCTCTCTG
64 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
5280751 GCCGGCGTAGTGCCCGCCCGCCAACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
129 GCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * *
5280816 TCCCAGTCTAAGATCGGATGGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGTAGAGGGGGA
190 TCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCG-CAGCAGGATCGATAGCACGCAGAAGGGGA
* * * * * *
5280881 CTCGACTGATCCCCAGCATGTGCATCCCGCCCCTCT-GCCTGGCTGAGTGCCTGCACGCTTGTTT
254 CCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTTGTTT
* * ** * * *
5280945 CATGCATACGGAGTTCATTCCCAGTCTAAGCATACAAACTTTATTCCCAGTCTAAGCATACGGAG
318 C--G--T--GG-GTTGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * *
5281010 TTCATTCCTAGTCTAAGATCAGACTGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGA
369 TTCATTCCCAGTCTAAGATCA-A----ACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGA
* ** ** * *
5281075 GCATGTGTTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGTAGAACCTG
429 GCATGTGCTACTGACGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * *
5281140 ATCGGCGACATTGGGGTTTCGACGATCGAAGGGGCCAGGGGGTGTGCGTACATGATGTGTGATGG
494 ACCGGCGACATTGGGGTTCCGACGATCG-AGGGGCCAGGGGGTGTGCGTACATGATGTGCGATGG
*
5281205 GTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACTCCCCC
558 GTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* *
5281270 TTAAATAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
623 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGCGGAC
* *
5281335 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
688 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTATACATG
* * * * * * *
5281400 CCAACAAAAATACAAGGATCGCGTCTACCAAGGTTGGGGCCAAAACTCTTTCCGAAGAAATTTTA
753 CCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGACCAAAAATCCTTCCAAAAAAATTTAA
* * *
5281465 AAAAATCTCGAATCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAACATGAGTCGTCTTGCCATG
818 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAACATGAGTCGTCTTGCCATG
5281530 AAACTTCACG
883 AAACTTCACG
* ***
5281540 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C-TAGACCGGCGACATTGGCATGC-AGAA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-G-CATTGGCA--CAAGAA
* *
5281602 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCACTC
62 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
5281667 TGCCCGACGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
127 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
5281732 CCAGTCTAAGATCAGACCAAATCGATGGTTGCAGCAGTAGGATCGACAGTACGCAGAAGGGGACC
192 CCAGTCTAAGATCGGACCGAATCGAGGGTTGC-GCAGCAGGATCGATAGCACGCAGAAGGGGACC
* ** * * *
5281797 CGGCCGATCCCCGGCTTACGCATCCCACCCCTTTGGCCGGCTGAGCGCCCACACGCTTGTTTCGT
256 CGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGT
*
5281862 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGAAGTTCATTCCCAGTCTAAG
321 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* *
5281927 ATCAAACCGGACCGAGGTTTGTGGCAACACATGCTGGGCTCGAGCATGTGCTACTG-CTGCATTT
386 ATCAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTACTGAC-GCATTT
* ** * *
5281991 TTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCG
450 TTCTTCACCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCG
* *
5282056 ACGATCG-GGGGCCCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
515 ACGATCGAGGGG-CCAGGGGGTGTGCGTACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTAT
*
5282120 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTT
579 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
5282184 ACAGGTTTGCTG-CAAGTAGCCATTAAAGTGTTTGAAATGCGGACACTTTTTTCAAATGGTCACA
644 ACAGGTTTGCTGTC-AGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGTCACA
* * *
5282248 AAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTGTACATGCCATCAAAAATACAAGGATC
708 AAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTATACATGCCAACAAAAATACAAGGATC
* **
5282313 ACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTGAAA
773 ACGTCTACCAAGGTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAA
*
5282378 AGTTTTGAAAAA-CGTGAAAAATAGAA-ATTGAGTCGTCTTGCCATGAAACTTCATG
838 AGTTTT-AAAAATCGTGAAAAATAGAACA-TGAGTCGTCTTGCCATGAAACTTCACG
*
5282433 TGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-AGAAATA
*
5282498 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGG
65 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * *
5282563 TTGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAGGCATACAGAGTT
130 CCGGCGTA--G-T-----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
5282628 CATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAG-AGG
187 CATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGC-GCAGCAGGATCGATAGCACGCAGAAGG
* * * * * **
5282692 AGGACCTGATCGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCA
251 -GGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTG
* *
5282757 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATATGAAGTTCATTCCCAG
315 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* **
5282822 TCTAAGATCAGACCGGACCGAGGGTTAAGGCAGCACATGCTG
380 TCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCACATGCTG
5282864 AGCGCCCGCA
Statistics
Matches: 1161, Mismatches: 139, Indels: 64
0.85 0.10 0.05
Matches are distributed among these distances:
891 1 0.00
892 2 0.00
893 355 0.31
894 99 0.09
895 116 0.10
896 1 0.00
899 1 0.00
900 55 0.05
901 244 0.21
903 1 0.00
907 4 0.00
908 2 0.00
910 1 0.00
912 1 0.00
914 140 0.12
915 4 0.00
916 4 0.00
917 9 0.01
918 121 0.10
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGAATCGAGGGTTGCGCAGCAGGATCGATAGCACGCAGAAGGGGACCCGACC
GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
ACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTACTGACGCATTTTTCTTC
ACCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
GAGGGGCCAGGGGGTGTGCGTACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGTCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTAAGCTGAATTTTTTTATACATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGGTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTAA
AAATCGTGAAAAATAGAACATGAGTCGTCTTGCCATGAAACTTCACG
Found at i:5283087 original size:26 final size:26
Alignment explanation
Indices: 5283057--5283109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5283047 GTCGACTCAG
*
5283057 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
5283083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5283109 G
1 G
5283110 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5283097 original size:282 final size:282
Alignment explanation
Indices: 5282606--5283145 Score: 758
Period size: 282 Copynumber: 1.9 Consensus size: 282
5282596 CATTTCGTCT
* **
5282606 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTGCGGCAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGC
* * ** *
5282671 AGGATCGATAGCACGCAGAGGAGGACCTGATCGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCC
66 AGGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
* * * * * **
5282736 GACTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GACTGAGCACCCGCACGCTCATTTCATGGGTCGACTCAGGCATACAAAGTTCATTCCCAGTCTAA
* *
5282801 GGATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAAGGCAGCACATGCTGAG
196 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAAGGCAGCACATGCTGAG
5282866 CGCCCGCAGGCTTGTTTCGTGG
261 CGCCCGCAGGCTTGTTTCGTGG
* ** *
5282888 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGC
* * *
5282953 AAGG-TCGACAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGC
66 -AGGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
* * * * *
5283017 TGGCTGAGCACCCGCGCGCTCGTTTCATGGGTCGACTCAGGCATACAAAGTTCATTCCTAGTCTA
130 CGACTGAGCACCCGCACGCTCATTTCATGGGTCGACTCAGGCATACAAAGTTCATTCCCAGTCTA
* * * **
5283082 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGGCAGCACATGCTG
195 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAAGGCAGCACATGCTG
5283146 GGATCGAGCA
Statistics
Matches: 223, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
282 220 0.99
283 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (282 bp):
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGC
AGGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
GACTGAGCACCCGCACGCTCATTTCATGGGTCGACTCAGGCATACAAAGTTCATTCCCAGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAAGGCAGCACATGCTGAG
CGCCCGCAGGCTTGTTTCGTGG
Found at i:5284015 original size:26 final size:26
Alignment explanation
Indices: 5283963--5284066 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
5283953 GTTGACTTAG
*
5283963 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5283988 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5284014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5284040 GCATACGGAGTTTATTCCC-GATCTAA
1 GCATACGGAGTTCATTCCCAG-TCTAA
5284066 G
1 G
5284067 ATCGGATCAG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
25 15 0.21
26 58 0.79
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5284939 original size:25 final size:26
Alignment explanation
Indices: 5284894--5284945 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
5284884 GTTGACTTAT
5284894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5284920 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5284945 G
1 G
5284946 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5286285 original size:901 final size:901
Alignment explanation
Indices: 5284014--5293371 Score: 12316
Period size: 901 Copynumber: 10.4 Consensus size: 901
5284004 CCCAGTCTAA
* * *
5284014 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCC-GATCTAAGATCGGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCGGA
* * **
5284078 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCAAATTTTTCTTCGTCGGG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
5284143 GCACCA---TC---G--T---CGGAGAACCTAACCGACGGCATTGGGGTTCTGATGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5284197 CCAGGGGGTGTGTGCACATGATGTGCGATGAGTGCTGGTACTTGGCCATTATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
5284262 CCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTAC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5284327 C-GATAGCCATTAAAGTGTCTGAAATAGGGACAGTTTTTTGCAAATGGTCACAAAATCTTGTACA
325 CAG-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACA
* ** *
5284391 CTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACACCAAAAAAAATACAAGGATCACGTCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
5284456 TTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAATCTCGAACCGTAAAAAGATTCAAAAAT
453 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
5284521 CGTAAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
***
5284586 ATGAATTTATTTGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5284651 TACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-----G--AG---G
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCG
**
5284706 -CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGAAGTCTAAGATCAGACC
713 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * *
5284770 GGATTGAGGGTTGCAGCAGCAGGATTGACAGCACACAGAGGGGGACCCGGTCC-ATCCCCGGCTT
778 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTT
* * * * * *
5284834 GTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAT
842 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
5284894 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * * * * *
5284958 CGAGGGTTACGATAGCACATGCTGGCCTCGAGCATGTGCTGGTGTCGTATGTTTCTTCATCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
5285023 CACCATCATCGGAGCATCGTCGGAGAACCTGATCGACGGCATTAGGGTTCCGACGATCGGGGGG-
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * * *
5285087 CTGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTATC
196 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5285152 CCTCATCAATCCTC-AGGAACTCACACCCCCTTAAAGAGCACTAGAGATTTTACAGGTTTGCTGC
261 CCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5285216 CAGTAGCCTTTAAAGAGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
5285281 TCGAGTTTTTAGCTGAGTTTTTTTGTGCACGCCAACAAAAAATACAAGGTTCACGTCTACCAAGT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGT
* * *
5285346 TTGGAGCCAAAACTCCTTCC-AAATAAATTTTAAAAAATCTCGAACCGTAAAAAATTTCAAAAAT
454 TTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
5285410 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
5285475 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * ** * *
5285540 TACCACCGTATCAATCCACGGCCTGTGCATCCTATCTCTCTGGTCGGCGTAGTGCCCACCCGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCC
* * * * * *
5285605 GCCCGCCCGCTAGTTTCGTCAGTTGCCTCAGGCATACGGAGTTCTTTCCCAGTCTAACATCAGAC
712 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * *
5285670 TGGACCGATGGTTGCGCCAGTAGGATCGGCAGCACGTAAAGGGGGACCTGACCTATCCCCGGCTT
777 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* ** * * * *
5285735 GCGCATCCCGCTTCTCTGGCCAGTTGAGCGCCCGCACGTTTC-TTTCGTGTGTTGACTTAG
842 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAG
* * ** * ** *
5285795 GCATACGGAGTTCATTCCCAGTCTGAGCATACGAAGTTCATAACC-TTCTAAGATCGGACCAAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * *
5285859 CGAGGGTTGCGACAGCACTTGCTGGGCTTGGGCATGTGCTGCTGCCACATTTTTCTTCGTCAGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** *
5285924 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACAACATTGGGGTTCCGGCGATCGGGGGGC
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * ** * * **
5285989 CGGGGGGGTCTGCGCATATGATGTGTTATGGGTGTTGGTACGTGTTCCTTATATTGGCCCCCTAT
196 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
5286054 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5286119 TAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
5286184 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5286249 TGGGGCCAAAACTCCATCCAAAAAAATTTT-AAAAATCCCGAACCGTAAGAAGTTTCGAAAATCA
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
5286313 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
5286378 GAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * * * *
5286443 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGATGTAGTAACTGCCCGCCTGT
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCGCCCGCCCGC
* * * * * * *
5286508 CCGCCCTCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCATTC-AAGATCAAACCA
714 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * ** * * * ** * * * *
5286572 AACCAAGGGTTGCAACAACAAGATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTTC
779 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * ** * * *
5286637 GCATCCCGGCCCTCTTGCTAGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGACTTAG
844 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5286695 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
5286760 TGAGGGTTTTGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTTGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
5286825 CACCATCGTTGGAGCATCGCCGGAGAACCTGACCGACGGCTTTGGGGTTCCGGA-GATCGATGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCG-GGGG
*
5286889 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTA
194 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5286954 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
5287018 CCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * **
5287083 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAGTA-AATGGATCACGGGTACCAAG
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAG
* * * **
5287147 TTTGGGACCAAAAATTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAAT
453 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
5287212 CGTGAAAAATAGAAAACGAGTCGTAC-TGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTA
518 CGTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * * *
5287276 TATGAATTTACAAGCCATAAAAATGACACTGGCACGTAGAAATCTAAAGATGTGCCTAAACGCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
5287341 CTACCACCCTATCGCTCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCC
* * * * * * *
5287403 ACCTGGCTGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGAC
712 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** * **
5287468 CAGACCAAGGGTTGTGGCAGCAGGATCGGCAATACACAGAGGGGGACCCGGTCGATCCCCGGCTT
777 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * *
5287533 GCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
842 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
5287593 GCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * *
5287658 TGAGGGTTGCGACAGCACATGATGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTGCGCCGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* **
5287723 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAACATTGGGGTTCCGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* *
5287788 CCGGGGGGTTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * *
5287853 TCCCTCA-CAAACCTAAAGAACTCACA-CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5287916 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
5287981 TTCGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCCACCAGGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
5288046 TTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
5288111 GTGCAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
5288176 TGAATTTACAAGATATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
5288241 ACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGT---GCCCG-CCGA
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGC
* * * ** * *
5288302 CCG---GCTCTTTTTGTCAGTTACCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA
714 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * ** ** * * *
5288364 GACTGACGGTTGCGGCAGCAGGATCGGTAGCACGTGGAGGGGGACCAGACCAATCCCCGGCATGC
779 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
5288429 GCATCCCACCCCTCTGGCCGGCTGAGTGCCCACACGCTCATTTCGTTGGTTGACCTAG
844 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5288487 GCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
5288552 CAAGGGTTGTGGCAACACATGCTAGGCTCGGGCATGTGCTAGTGTCGTATTTTTCTTCGTCAGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
5288617 CA-CATTTGCCGGAGCATCGTCAGAGAACATGACC-AGCGACATTGGGGTTCCGACGATC-----
131 CACCA-TCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGG
* * * *
5288675 G--GGGGGGTGTGCACAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
194 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5288738 TCCCTTATCAAACCTCGAGAACTAACACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5288803 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
5288868 TTTGACTTTTTAGCCGAATTTTCTTGTGCATGCCAACAAAAATACAAAGATCACGTCCACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
5288933 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
5288998 GTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTC
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5289063 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * **
5289128 ACCACCCTATCGGTCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACACAGT---GCCCGCCCGC
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGC
* * * * *
5289190 CCGCCCTCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCGAAGATCAGACCG
714 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * *
5289255 GACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCC-AGCCGATCCTCGGCTTG
779 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTG
* * * ** * *
5289319 CACATCTC-GCCCTCTGGCCAACTGAGCGCCCGCATGCTCCTTTCGTGGGTTGACTTAG
843 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
5289377 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
5289442 CGAGGGTTACGGCAGCACATGCTATGCTCGAGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
5289507 CACCATCGTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * * *
5289572 CTGGAGGGGTGTTCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
195 CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5289637 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5289702 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
5289767 TTCGAGTATTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
5289832 TTGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
5289897 GTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5289962 TGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * ***
5290027 ACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAAT---GCTTACCCGC
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGC
** *
5290089 TTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-ATCAAACCG
714 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * *
5290153 GACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGC
779 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * ** * * *
5290218 ACATCCCACCCCTCTGGCCGGTTCAGCGTTCGCATGCTCCTTTCGTGGGCTGACTTAG
844 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * **
5290276 GCATACTAATTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAGCCAAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGA
* * ** *
5290340 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCTGG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
5290405 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
* * * * **
5290470 GCCAGGGGCAGTGTGCGCACATGATGTGCGATGGGTACTAGTACGTGTTCCTTATATTGGCCCCC
194 GCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
5290535 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
5290600 TGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
5290665 GCTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCATA-AAAAATACAAGGATCATGTCTACCA
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCA
** * * *
5290729 AGTTTGGGGTGAAGACTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTAAAAA
451 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * *
5290794 ATCGTGACAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATT
516 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
5290859 GTATGAATTTACAAGCCATAAAAATGGCATTGAAATGCAGAAATATGAAGATGTGCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
5290924 CCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCAGG-CGGCATAGTGCCCGCCCGC
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGC
* * * * * **
5290988 CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGTGTTCATTCACAATCTAAGATTGG
710 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
5291053 ATCGGATCGATGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGTGAGACCCGGCCGATCCCCAGC
775 ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * **
5291118 TTGCGCATCTCGCCCTTCGGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGTTTTGACTTAG
840 TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5291180 GCATACGGAGTTCATTCCCAGTTTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * **
5291245 CAAGGTTTGAGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * *
5291310 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGTGACATTGGGGTTTCGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* *
5291375 CCGGGGGGTGTACGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5291439 CCCTCATCAAACCTCGAGAACTGACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5291504 CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5291569 TCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * ** *
5291634 TGGGGCCAAAAATACTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTG
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
5291699 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * **
5291764 GAATTTACAGGCCACAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
5291829 CCATCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCTCGC
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGC
* * * *
5291894 CCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCCGACCG
714 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * * * * *
5291959 GACCGAGGGTTTAGGTAGTAGGATCGACAGCACGCATGA-CGGGTCCC-AGCAGATCCCCAGCTT
779 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GAGGGGGACCCGA-CCGATCCCCGGCTT
* * * *
5292022 GTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAG
842 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5292082 GCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
5292147 CGATGGTTACGGTAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
5292212 CACCATCGCCGGAGCATCGTCGAAGAACATGACCGACGGCATTGGGGTTCTGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * * *
5292277 CCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATAATAGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
5292342 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* ** *
5292407 CAGTAGCGATTAAAGTGTCTG-CGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * * *
5292471 TTTAATTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGGT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
5292536 TGGGGCCAAATCTGCTTTCGAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCG
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
5292601 TGAAAAATAGAAAACGAATTGTCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
5292666 GAATTTACAAGCCATAAAAA-GAGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCT
585 GAATTTACAAGCCATAAAAATG-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
** * * * *
5292730 ACCACCCTATCGATCCATAGCTTGCACATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCTGCCCG
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCG
* * * **
5292795 CCCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
713 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * *
5292860 AGACCGAGGGTTGCCACAGCAGGATCGATAGCACGCAGAGGGTGACCCGACCGATCCCCGGCTTG
778 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
** * * **
5292925 CGCATCCCACCCCTCAAGCCGGCTGAGCGCCCGTACGCTCATTTTAT-GGTTGACTTAG
843 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
5292983 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTATTCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
5293048 TGAGGGTTGCAGCAGCACATGCTGGGCTTGGCCATGCGCTGGTGTCACTTTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * ** *
5293113 CGCCATCGTCGGAGCATCACCAGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGAAGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG
* * * *
5293178 TCGGGGGGTGAGCGCACATGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5293243 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCGGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5293308 TAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAC
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
5293372 ATTTTTCTTC
Statistics
Matches: 7423, Mismatches: 964, Indels: 160
0.87 0.11 0.02
Matches are distributed among these distances:
879 83 0.01
880 37 0.00
882 2 0.00
885 59 0.01
886 22 0.00
887 390 0.05
888 71 0.01
889 390 0.05
890 239 0.03
891 110 0.01
893 2 0.00
894 308 0.04
896 1 0.00
897 59 0.01
898 760 0.10
899 803 0.11
900 777 0.10
901 1660 0.22
902 1015 0.14
903 358 0.05
904 275 0.04
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:5286725 original size:26 final size:26
Alignment explanation
Indices: 5286695--5286747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5286685 GTTGACTTAG
*
5286695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5286721 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5286747 G
1 G
5286748 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5287620 original size:26 final size:26
Alignment explanation
Indices: 5287590--5287643 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5287580 TGGGTTAACT
*
5287590 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAATC
5287616 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATTCCCAATC
5287642 TA
1 TA
5287644 AGATTGGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAATC
Found at i:5288523 original size:26 final size:26
Alignment explanation
Indices: 5288487--5288539 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5288477 GTTGACCTAG
5288487 GCATACGGAGTTCT-TTCCCAGTCTAA
1 GCATACGGAGTT-TATTCCCAGTCTAA
5288513 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
5288539 G
1 G
5288540 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:5289406 original size:26 final size:26
Alignment explanation
Indices: 5289377--5289429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5289367 GTTGACTTAG
*
5289377 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5289403 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5289429 G
1 G
5289430 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5290306 original size:26 final size:26
Alignment explanation
Indices: 5290276--5290328 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5290266 GCTGACTTAG
* * *
5290276 GCATACTAATTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5290302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5290328 G
1 G
5290329 ATTGAGCCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5291219 original size:26 final size:26
Alignment explanation
Indices: 5291183--5291232 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5291173 GACTTAGGCA
*
5291183 TACGGAGTTCATTCCCAGTTTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
5291209 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5291233 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:5292112 original size:26 final size:26
Alignment explanation
Indices: 5292082--5292134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5292072 GTTGACTTAG
*
5292082 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5292108 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5292134 G
1 G
5292135 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5293012 original size:26 final size:26
Alignment explanation
Indices: 5292983--5293035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5292973 GTTGACTTAG
5292983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5293009 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5293035 G
1 G
5293036 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5293592 original size:277 final size:276
Alignment explanation
Indices: 5293097--5293598 Score: 738
Period size: 277 Copynumber: 1.8 Consensus size: 276
5293087 TGGTGTCACT
* * * ** * *
5293097 TTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATCACCAGAGAACCTAACCGGTGGCATTGGGGTT
1 TTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCACCAGAGAACCTAACCGACGGCATTAGGCTT
* * * * *
5293162 CCGACGATCGAAGGGGTCGGGGGGTGAGCGCACATGATTTGCAATGGGTGCTGGTACTTGGCCCT
66 CCGACAATCGAAGGGGCCGGGGGGTGAGCGCACATGATGTACAATCGGTGCTGGTACTTGGCCCT
5293227 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
131 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
5293292 TTTAAAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTGTCA
196 TTTAAAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTGTCA
5293357 CAAAATCTTGTACACA
261 CAAAATCTTGTACACA
* * *
5293373 TTTTTCTTCGCCGGGGCACCATCACT-GGAGCTTCGCC-GAAGAACCTGACCGACGGCATTAGGC
1 TTTTTCTTCGCCGGGGCACCATC-CTCGGAGCATCACCAG-AGAACCTAACCGACGGCATTAGGC
** * *
5293436 TTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATCGGTGCTGGTACTTGGC
64 TTCCGACAATCGAAGGGGCC-GGGGGGTGAGCGCACATGATGTACAATCGGTGCTGGTACTTGGC
* *
5293501 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCTCTTAAAGAGCATTTGA
128 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* **
5293566 GATTTTACAGGTTTGCTTCCAGTAGCCATTAAA
193 GATTTTAAAGGTTTGCGGCCAGTAGCCATTAAA
5293599 ATGGTCACAA
Statistics
Matches: 198, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
275 1 0.01
276 65 0.33
277 132 0.67
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (276 bp):
TTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCACCAGAGAACCTAACCGACGGCATTAGGCTT
CCGACAATCGAAGGGGCCGGGGGGTGAGCGCACATGATGTACAATCGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTAAAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTGTCA
CAAAATCTTGTACACA
Found at i:5294161 original size:26 final size:26
Alignment explanation
Indices: 5294132--5294187 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
5294122 TGGGTTGACT
* *
5294132 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCACTC
*
5294158 TAAGCATACATAGTTCATTCCCACTC
1 TAAGCATACAGAGTTCATTCCCACTC
5294184 TAAG
1 TAAG
5294188 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCACTC
Found at i:5296717 original size:159 final size:159
Alignment explanation
Indices: 5296383--5296717 Score: 386
Period size: 159 Copynumber: 2.1 Consensus size: 159
5296373 GCCCACCCAT
* **
5296383 TCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAG
1 TCGTTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAG
* ****
5296448 GTTGCAAGACCAGGATCGACAGCACGCTATGGGGGACCCGGTTGATCCTCGGCTTACGCATCCCA
66 GTTGCAAGACCAGGATCGACAGCACGCTAAGGGGGACCCAACCGATCCTCGGCTTACGCATCCCA
* *
5296513 CCCTTCCGGCCGGCTGAGCGCCCGCATGC
131 CCCCTCCGGCCGGCTGAGCGCCCGCACGC
* * * * *
5296542 TCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
1 TCGTTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAG
** ** * * **
5296607 GTTGCTGGAGTAGGATCGGCAGCATGC-AGAGGGGGACCCAACCGATCC-CTGGCTTGTGCATCC
66 GTTGCAAGACCAGGATCGACAGCACGCTA-AGGGGGACCCAACCGATCCTC-GGCTTACGCATCC
* * *
5296670 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGT
129 CACCCCTCCGGCCGGCTGAGCGCCCGCACGC
* *
5296701 TCTTTTCATGGTTTCAC
1 TCGTTTCATGGGTTCAC
5296718 ATAAGGGGAC
Statistics
Matches: 145, Mismatches: 29, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
158 2 0.01
159 143 0.99
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.23
Consensus pattern (159 bp):
TCGTTTCATGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAG
GTTGCAAGACCAGGATCGACAGCACGCTAAGGGGGACCCAACCGATCCTCGGCTTACGCATCCCA
CCCCTCCGGCCGGCTGAGCGCCCGCACGC
Found at i:5296785 original size:84 final size:84
Alignment explanation
Indices: 5296638--5296804 Score: 289
Period size: 84 Copynumber: 2.0 Consensus size: 84
5296628 GCATGCAGAG
* * *
5296638 GGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTC
1 GGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGTTC
*
5296703 TTTTCATGGTTTCACATAA
66 GTTTCATGGTTTCACATAA
5296722 GGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGTTC
1 GGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGTTC
*
5296787 GTTTCGTGGTTTCACATA
66 GTTTCATGGTTTCACATA
5296805 GGCATACAGA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.15, C:0.37, G:0.25, T:0.23
Consensus pattern (84 bp):
GGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGTTC
GTTTCATGGTTTCACATAA
Found at i:5296842 original size:26 final size:26
Alignment explanation
Indices: 5296806--5296909 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
5296796 TTTCACATAG
5296806 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5296832 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5296858 GCAT-CAGAGTTCATTACCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5296883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5296909 G
1 G
5296910 ATCAGACCGG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
25 23 0.32
26 49 0.68
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5296887 original size:51 final size:51
Alignment explanation
Indices: 5296806--5296915 Score: 177
Period size: 51 Copynumber: 2.2 Consensus size: 51
5296796 TTTCACATAG
*
5296806 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 GCAT-CAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* *
5296858 GCATCAGAGTTCATTACCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 GCATCAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
5296909 G-ATCAGA
1 GCATCAGA
5296916 CCGGACCGAG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 6 0.11
51 45 0.82
52 4 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (51 bp):
GCATCAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
Found at i:5297789 original size:26 final size:26
Alignment explanation
Indices: 5297760--5297812 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5297750 GTTGACTTAG
*
5297760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
5297786 GCATATGGAGTTCATTCACAGTTTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5297812 G
1 G
5297813 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5299631 original size:872 final size:871
Alignment explanation
Indices: 5296883--5300171 Score: 4633
Period size: 872 Copynumber: 3.7 Consensus size: 871
5296873 ACCGGTCTAA
*
5296883 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
5296947 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCATCGAAGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAG
* * *
5297012 AACCTGACCGGAGGCATTGGGGTTCCGACGATC-GGGGGCGGGGGGGTGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGC-CGGGGG-GTGTGCGCACATGATGT
* * * * *
5297076 GTGATGGGTGCTGGTACCTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCA
*
5297141 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5297206 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTT
* * * *
5297271 GTGCACGCCAACAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAACTCATTCCG-AAA
389 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAA
* **
5297335 AATTTTCTAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5297400 TTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5297465 CATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATGCACGGCTTG
* * * * *
5297530 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCTGCCCATCCGCCCGTTCGTTTCATCGGTTG
647 CGCATCCTGTCTCTCTGGCCGGCGTAGTGGCCGCCTG--C--CCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
5297595 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGTAGGA
708 GCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGA
* * ** * * *
5297660 TCA-ACAGCACGCAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCTCCCCTCTGGCTGAC
773 T-AGGCAGCACCCAGAGGGGGACCCGA-CGATCCCCGACTTGCGCATCCCACCCCTCTGGCAGAC
* *
5297724 TGAGCACCCGCATGCTCATTTCGTTGGTTGACTTAG
836 TGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAG
*
5297760 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTTTAAGATCGGACTAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C------AGA-C-G-C-GGAC
* * *
5297825 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTGAG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAG-G
*
5297889 GCACCATCACCAGAGCATCGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCTGA
105 GCACCAT--------CAT---CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGA
* * *
5297954 CGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATA
159 CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
5298019 TTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTA
223 TTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
5298084 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCACATGGTCACGAA
288 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
5298149 ATCTTGTACACTTTGAGTTTTTAGCTGAATTT-TTTGTGCACGCAAACAAAAAATACAAGGATCA
353 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCACGCCAAC-AAAAATACAAGGATCA
* * *
5298213 CGTCTACCAAGTTTGGGAACAAAACTCCTTCTGAAAAAATTTTTAAAAATTCTCGAACCGCAAAA
417 CGTCTACCAAGTTTGGG-CCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAA
5298278 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
480 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
5298343 A-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAATATGTG
545 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
*
5298407 CCTAAACCCACCTACCACCCTATCCATGCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT
610 CCTAAACCCACCTACCACCCTATCCATGCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT
*
5298472 GGCCGCCTGCCCGCCCGCACGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAA
675 GGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAA
* * * * *
5298537 GATTGAACCAGACTGAGGGTTGTGGTAGCAGGATAGGCAGCACCCAGAGGGAGACCCAACCATCC
740 GATTGAACCAGACCGAGGGTTGCGGTAGCAGGATAGGCAGCACCCAGAGGGGGACCCGACGATCC
* * * * *
5298602 CCGACTTACGCATCCCACCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
805 CCGACTTGCGCATCCCACCCCTCTGGCAGACTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTT
5298667 AG
870 AG
* ** * * * *
5298669 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTC-AACCGATGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5298733 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCG-CTGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTC-GGA
*
5298797 GAACCTGACCGGCGGCATTGGGGTT-TCGACGATCGGGGGGCCGGGGGTGTGTGTGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCT-GACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATG
5298861 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTC
5298926 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5298991 ATGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATTTATT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATT
* * * * *
5299056 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAGGTTTGAGGCCAAAACGCCTTCTGAAA
388 TGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCTGAAA
5299121 AAATTTTAAAAAATCCCGAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5299185 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
5299250 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATGCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATGCACGGCTT
*
5299315 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGGCCGACTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
646 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
5299380 TAGGCATACGGAGTTTATTACCAGTCTAAGATTGAACCAGACCAAGGGTTGCAGTAGCAGGATTG
711 TAGGCATACGGAGTTCATTACCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATAG
* * * *
5299445 GCAACACCCAGAGGGGGACCCGACTGATCCCCGACTTGTGCATCCCGCCCCTTTGGCAGACTGAG
776 GCAGCACCCAGAGGGGGACCCGAC-GATCCCCGACTTGCGCATCCCACCCCTCTGGCAGACTGAG
* *
5299510 CGCCCGCATGCTCGTTTTGTGGGTTGACTTAG
840 CACCCGCATGCTCGTTTCGTGGGTTGACTTAG
* *
5299542 GCATACGTAGTTCATTCCCAGTCTAAGATCAGAC-CGGACCGAGGGTTGCGGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
5299606 GTTCGGGCATG-GCTGGTCCCGCATTTTTCTTCGCCAGGGCACCATCATCAGAGCATCACCGAAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAG
* * *
5299670 AACCTGACCGACGGCATTGGGGTTCTGGCGATTGGCGGGGCCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * * * *
5299735 AGATGAGTGCTGGTACTTAGCCCGTATATTAGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCAC
5299800 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
5299865 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTG
* * *
5299930 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAGAAAA
390 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAA
* * * * *
5299995 TTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTA
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
5300060 CCTTGAAACTTTACGTGAAGGCTTAAAGGACCATTGTAAGAATTTAGAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
5300125 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
5300172 AGCATACGGA
Statistics
Matches: 2166, Mismatches: 187, Indels: 124
0.87 0.08 0.05
Matches are distributed among these distances:
870 1 0.00
871 281 0.13
872 849 0.39
873 152 0.07
875 2 0.00
877 21 0.01
879 1 0.00
882 1 0.00
883 65 0.03
884 2 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 1 0.00
892 1 0.00
896 1 0.00
897 1 0.00
898 3 0.00
899 1 0.00
900 2 0.00
902 3 0.00
903 66 0.03
904 1 0.00
907 1 0.00
909 82 0.04
910 96 0.04
911 3 0.00
912 1 0.00
913 17 0.01
914 404 0.19
915 90 0.04
916 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGT
GCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATGCACGGCTTGCGCA
TCCTGTCTCTCTGGCCGGCGTAGTGGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTACCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATAGGCAGC
ACCCAGAGGGGGACCCGACGATCCCCGACTTGCGCATCCCACCCCTCTGGCAGACTGAGCACCCG
CATGCTCGTTTCGTGGGTTGACTTAG
Found at i:5301951 original size:26 final size:26
Alignment explanation
Indices: 5301911--5301966 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
5301901 TGGGTTGACT
5301911 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
* *
5301937 TAAGCATAC-AGAGTTCATTCCTAGTC
1 TAAGCATACGA-AGTTCATTCCCAATC
5301963 TAAG
1 TAAG
5301967 ATCAGATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:5302684 original size:26 final size:26
Alignment explanation
Indices: 5302654--5302704 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
5302644 GTCGGTTCAG
* *
5302654 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
5302680 GCATATGAAGTTTATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
5302705 TGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5303258 original size:888 final size:884
Alignment explanation
Indices: 5300179--5305190 Score: 4436
Period size: 898 Copynumber: 5.6 Consensus size: 884
5300169 CTAAGCATAC
* * * * * * *
5300179 GGAGTTCATTCTCAGTCTAAGATTGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAG
1 GGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGG
* *** ** * * *
5300244 CGTGTGCTGGCACCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCGTCGTCGGAGAACCTGA
65 CATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGC-AC-AC-CAGAA-CT--
* * * * ** * *
5300309 CAGACGGCATTGGGGTTCCGGCGA-CCGGGGGCCATGAGGTGTGTGCACATGATGTGCGATGGGT
124 -TGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
5300373 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
188 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
5300438 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACAC
253 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
* * * *
5300503 CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
318 TTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACC
* ** * * *
5300568 AACAAAAATACAAGGATCACATCTACCTGGTTTGGGGCTAAAACT-CCTTCCTAAAAATTTTTAA
383 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CAAAAAAATTTTAA
* ** * * *
5300632 AAAATCACGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGA
447 AAAATCCCGAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
5300697 AACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATAGCATTGACAT
511 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
5300762 GCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCTG
576 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
5300827 TCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGTCCGCCTGCACTTTCATCGGTTGGCTTAGGCAT
641 TCTCTCTAGCCGACATAGTGCCCACCTGCCCGCCCGCCTGCTCTTTCGTCGGTT--C--AGGCAT
* * * *
5300888 ACGGAGTTCATTCC----C--AG--TGT-AAG--A-T--CGGAC--TGA---ACC-G---AGGGT
702 ACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTATTCCCAGTCTATGATCGACCGGACTAAGG-
* * * * * *
5300930 TGAGACAGCAGGATCGGCAACACGCAAAGGGGGGACCC-GATCGATCCCCGGCTTGCGCATCCCG
766 TGCGGCAGCAGGATCGACAGCACGCAGA-GGGGGACCCGGA-CGATCCCTGGCTTGCGCATCCCG
* * * * * *
5300994 CCCCTCTGGTC-GCTTGAGCGCCCGCTCACTCGTTCCGTAGGTTGACTTAGGCATACGGAATTCA
829 CCCCTCTGGCCGGC-TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG--T-----A-T-A
5301058 TT
884 -T
* * *
5301060 CCCAGTCTAAGAATATGGGGTTCATTCCCAGTATAAGATCGGACCGAACCGCGGGTTGCGGCATG
1 ----G-----G---A----GTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTT-----A--
* * * *
5301125 TGCTGGTACCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCAC
42 --C-GG---CAGCACATGCTGGGCTAGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCAC
* * * *
5301190 CATCGCCGGAG-A-ACCTG-AC-CGACGGCATTGGGGTTTCGGCGATCGGGGGG-CGGGGGGTGT
101 CATCGTCGGAGCACACCAGAACTTGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGT
* * * *
5301250 GCGCGCATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAACCCCTCATCAAA
166 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
5301315 CCTCGAGAACTCACA-CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATT
231 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
* * * *
5301379 AAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
296 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
5301444 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAA
361 GCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * *
5301509 AT-CCTTCTGAAAAATTTTTAAAAAATCCCAAACCGAAAAAAGTTTCGAAAATCGTGAAAAATAG
426 CTCCCTTC-AAAAAAATTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAG
*
5301573 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAA
489 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
5301638 GCCATAAAAATGGCATTGGAAGGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATC
554 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5301703 GATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCAGCTC
619 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCACCTGCCCGCCCGCCTGCTC
* * * * *
5301764 GTT--TC-ATT---G--T-TGG-G--C--T--TAG-----GCATACGGAGTTCATTCCCAGTCTA
684 TTTCGTCGGTTCAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTT-ATTCCCAGTCTA
* * * ** * * * * *
5301808 AGATCAGATCTGACTAA-G-G-GTTA-C-GG-TAG-TAGGATGCAGAGGGGGACCCGGCCGATCC
748 TGATC-GACCGGACTAAGGTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGACGATCC
** * * * * * *** * *
5301866 CCAGCTTGCACATCCTGCCCCTCTGGCCGGTTGCGTGGGTTGACTTAAGCATACGAAGTTCAT--
812 CTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CGCCCG-C--ACGC-T-CG--TTTCATGG
** * * * *
5301929 -TCCCAATCTAAGCATAC
869 GT-TGACT-TAGGTATAT
* * ** * ** ** *
5301946 AGAGTTCATTCCTAGTCTAAGATCAGATTGAACCGAGCTTTGTGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGG
* * * *** * * * *
5302011 CATGTGTTGGTGCCGCATTTTTCTTTGTCGGGCCACCATTGCCGGAGCATCATCGGAGAACCCGA
65 CATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA-CA-C-CAGAA--C--
** * * *
5302076 CCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
123 TTGACGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
5302141 TGCCGGTACTTGGCCTTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
187 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
5302206 TAAAGTGCATTGGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
252 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
5302271 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAC
317 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAC
* ** * ***
5302336 CAACTAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCTAAAACTGGATTCAAAAAAATTTTAA
382 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCAAAAAAATTTTAA
**
5302401 AAAATCTTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
447 AAAATCCCGAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5302466 AACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAG
511 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
5302531 GTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTGCGCATCCCG
576 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
5302596 TCTCTCTGGTCGACATAGTGCCCGCCTGCCCGCCCGTCC-GATCATTTCGTCGGTTCAGGCATAC
641 TCTCTCTAGCCGACATAGTGCCCACCTGCCCGCCCG-CCTGCTC-TTTCGTCGGTTCAGGCATAC
5302660 GGAGTTCATTCCTAGTCTAAGCATATGAAGTTTATTCCCAGTCTATGATCGGACCGGACTAAGGC
704 GGAGTTCATTCCTAGTCTAAGCATATGAAG-TTATTCCCAGTCTATGATC-GACCGGACTAAGG-
* * * *
5302725 TGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCGTCCCACC
766 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGACGATCCCTGGCTTGCGCATCCCGCC
* * * * *
5302790 CTTCCGACCGGCTGAGCGCCCGCACTCTCGTTTCACGGGTTGACTTAGGTATAT
831 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTATAT
* *
5302844 GGAGTTCATTCCCAGTCTAAGATCGTACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGG
* * ** * *
5302909 CATGAGCTGGTGTCACATTTTTCCTCGTCGGGGCACCCTCGTCGGAG-A-ACCTG-AC-TGACGG
65 CATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACACCAGAACTTGACGG
5302970 CATTGGGGTTTCGACGATCGGGAGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
130 CATTGGGGTTTCGACGATCGGG-GGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
5303035 TACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
193 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5303100 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTT
258 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTT
*
5303165 TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTACCAACAA
323 TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAA
* *
5303230 AAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAAATTTTAAAAAA
388 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-C-AAAAAAATTTTAAAAAA
* *
5303294 TCCTGAAGCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
451 TCCCGAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5303359 TCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACGTAG
515 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * *
5303424 AAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTACGAATCCCGTCTC
580 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * * *
5303489 TTTAGCCGGA-A-AGGTGCCCACCTATCCGCCCACCTGCTCGTTTCGTCGATTGGCTTATGCATA
645 TCTAGCC-GACATA-GTGCCCACCTGCCCGCCCGCCTGCTC-TTTCGTCGGTT--C--AGGCATA
* * *
5303552 CGGAGTTCATTCCCAGTCTAAG-AT-TG--G--A-T--CAGAC--TGA--G---GG--TTA--T-
703 CGGAGTTCATTCCTAGTCTAAGCATATGAAGTTATTCCCAGTCTATGATCGACCGGACTAAGGTG
* * ** *
5303596 -GGCAGCAGGATC-AGCAGCACGCAGAGAGGGACTC-GACTGATCCCCAGCTTGCGCATCTCGCC
768 CGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGAC-GATCCCTGGCTTGCGCATCCCGCC
* * *
5303658 CCTCTGGCTGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
831 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----TA--G-G-------
5303723 TCAGTCTAAGCAT
880 T-A---T----AT
* * * * * * *
5303736 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACTGCACATGCTCGACTTG
1 --GGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAG
* *
5303801 GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGTATCACCGAAGAACCT
63 GGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA-CACC--AGAA-CT
* * * *
5303866 GATCGACGGTATTGGGGTTTCGATGATCAGGGGGGCCGGGGGGGTGTGCGTACATGATGTGTGAT
124 --T-GACGGCATTGGGGTTTCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * * * * *
5303931 GGATGCTGGTACATGACCCCTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCC
184 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5303996 CCATAAAGAGCATCTGAGATTTTACAGGTTTGCTG-CAGTAAGCCATTAAAAGTGTCTGAAA-GG
249 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCAATT-AAAGTGTCTGAAATGG
* *
5304059 GGACAC-TTTTTCAAATGG-TACAAAATC-TG-ACAC-TCGAGTTTTTAGCTGCATTTTTTTGTG
312 GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * *
5304119 CATGCCAAAAAAAAAAACAGAGGATCATGTGTACCAAG-TT-GGGCCAAAACTCCCTCCGAAAAA
377 CATACC-AACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCAAAAAA
* * ** *
5304182 ATTTGAAACAAATCCCGAAC-CACAAAAGTTTTGAAAATCTTGAAAAATAGGAAAACCGAGTCGT
440 ATTTTAAA-AAATCCCGAACGTA-AAAAGTTTCAAAAATCATGAAAAATA-GAAAA-CGAGTCGT
* ** * *
5304246 GTCACCATGAAACTTCACGTGAAGGCTTAA-GGACCACTGTATGGAA-TTACAAGCCAGAAAAAT
501 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAA-
* * * * * *
5304309 TGAACATT-GCACATATAAAATATGAAGATGTGCCGAAACCCACCTAGCACCCTATCGATCCATG
564 TG-GCATTGGCACGTA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
5304373 GCTTGCGCATCCCGTCTCTCTAGCCGTCGTAG-ACCCACCCGCCCGCCCGCCTGCTCGTT--TC-
627 GCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCACCTGCCCGCCCGCCTGCTCTTTCGTCG
* * *
5304434 G-TC-GGC-T---G-G--C--T--TAG-----GCAAACGAAGTTCATTCCCAGTCTAAGATCAGA
692 GTTCAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTT-ATTCCCAGTCTATGATC-GA
* * * *
5304481 CCGGAC-AGAGGGTTGCTGTAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACCGATCCCTGG
755 CCGGACTA-A-GG-TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGA-CGATCCCTGG
* * * *
5304544 CTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGC
816 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGT
*
5304609 ATAC
881 ATAT
* * * *
5304613 GGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTAGGG
1 GGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGG
* * * *
5304678 CAGGTGCTGGT-TCCACACTTTTCTTCACCGAGGCACGATCGTCGGAGCATCACTGCAGAACTTG
65 CATGTGCTGGTGT-CACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA-CAC--CAGAACTTG
* *
5304742 AACGACGACATTGGGG-TTCCAGCGATC---GGG--GGGGCGTGTGCGCACATGATGTGCGATGG
126 -ACG--G-CATTGGGGTTTCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
5304801 GTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCC
186 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
5304866 TTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
251 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
* * * *
5304931 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATG
316 ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
* * * * *
5304996 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAA
381 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCAAAAAAATTTTA
* * * *
5305061 AAAAATCTCGAAACGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
446 AAAAATCCCG-AACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
5305126 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCATTGGCA
510 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
5305191 TGCAAAGGGG
Statistics
Matches: 3422, Mismatches: 469, Indels: 486
0.78 0.11 0.11
Matches are distributed among these distances:
857 59 0.02
858 1 0.00
860 3 0.00
861 1 0.00
862 1 0.00
863 1 0.00
865 1 0.00
867 16 0.00
868 233 0.07
869 23 0.01
870 126 0.04
871 436 0.13
872 60 0.02
873 85 0.02
874 13 0.00
875 129 0.04
876 6 0.00
877 5 0.00
878 3 0.00
879 4 0.00
880 3 0.00
881 5 0.00
882 6 0.00
883 5 0.00
884 5 0.00
885 12 0.00
886 8 0.00
887 34 0.01
888 265 0.08
889 276 0.08
890 19 0.01
891 8 0.00
892 11 0.00
893 33 0.01
894 104 0.03
895 14 0.00
896 7 0.00
897 77 0.02
898 500 0.15
899 143 0.04
900 94 0.03
901 178 0.05
902 88 0.03
903 13 0.00
904 22 0.01
905 206 0.06
906 20 0.01
907 1 0.00
910 59 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (884 bp):
GGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGGC
ATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACACCAGAACTTGACGGC
ATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCAAAAAAATTTTAAAAAATCCCG
AACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGC
CGACATAGTGCCCACCTGCCCGCCCGCCTGCTCTTTCGTCGGTTCAGGCATACGGAGTTCATTCC
TAGTCTAAGCATATGAAGTTATTCCCAGTCTATGATCGACCGGACTAAGGTGCGGCAGCAGGATC
GACAGCACGCAGAGGGGGACCCGGACGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTATAT
Found at i:5303736 original size:26 final size:26
Alignment explanation
Indices: 5303706--5303758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5303696 GTTGACTTAG
*
5303706 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5303732 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5303758 G
1 G
5303759 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5305311 original size:26 final size:26
Alignment explanation
Indices: 5305282--5305334 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5305272 GTTGACTTAG
* *
5305282 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5305308 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5305334 G
1 G
5305335 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5306208 original size:26 final size:26
Alignment explanation
Indices: 5306179--5306231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5306169 GTTGACTTAG
* *
5306179 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5306205 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5306231 G
1 G
5306232 GTCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5306945 original size:883 final size:891
Alignment explanation
Indices: 5305213--5306956 Score: 2551
Period size: 883 Copynumber: 2.0 Consensus size: 891
5305203 CCCGCAGAAT
*
5305213 CCCCGACTTGCGCATCCCACCCCTTCGGCCGACTGAGCGCCCGTACGCTCGTTTTGTGGGTTGAC
1 CCCCGACTTGCGCATCCCACCCCTTCGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
*
5305278 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
66 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACC
* * * *
5305343 AGACCAAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT
131 AGACCAAGGGTCGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCT
* *
5305408 GGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCAGGCGATCGGG
196 GGGGCACCAT--CC-G-G-ATCG--AGAGAACCTGACCGACAGCATTGGGGTTCAGACGATCGGG
* *
5305473 GGGGCCAGGGGGTGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
254 GGGGCCAGGGGGTGTTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATAGTGGC
* *
5305538 CCCCTATCCCTCAGCAAACCTTGTGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGT
319 CCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGT
* *
5305603 TTGCTGCGAGTAGCAATTAAAATGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTT
384 TTGCTGCCAGTAGCAATTAAAATGTCTGAAACGCGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
5305668 GTACACTTTGGGTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATAAAAGGATAACATCTAC
449 GTACACTTCGGGTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAACAAAAGGATAACATCTAC
* * * *
5305733 CAAGTTTGAGGCCAAAACTCTTTTCGAAAAAATTTAAAAAAATCCTGAATCGTAAAAAGTTTTGA
514 CAAGTTTGAGGCCAAAACTCTTCTCGAAAAAATTTAAAAAAATCCTAAACCGTAAAAAGTTTTAA
* * *
5305798 AAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCA
579 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
5305863 TTGTATCAATTTACAAGATATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACC
644 TTGTATCAATTTACAAGACATAAAAATGGCATTGGCAGGCAAAAATATGAAGATCTGCCTAAACC
* *
5305928 CACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCCCTCTTGCCGGCGTAGTGCCCGCCC
709 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCC
* *
5305993 GCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAACATTGGAACAGA
774 GCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCGGAACAGA
5306058 CCGAGGGTTGCAGTAGGAGGATCGGTAGTACGTAGTGGGGGAACCGGCTGATC
839 CCGAGGGTTGCAGTAGGAGGATCGGTAGTACGTAGTGGGGGAACCGGCTGATC
* * * * *
5306111 CCCCG-CTTGCGCATCCCGCCCC-TCTGGCTGGCTTAGTGCCCGTACGCTCGTTTCGTGGGTTGA
1 CCCCGACTTGCGCATCCCACCCCTTC-GGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
* * *
5306174 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGGTCGGAT
65 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGAC
* * * *
5306239 CGGATCGAGGGTCGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGTATTTTTCTTCG-
130 CAGACCAAGGGTCGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGC
* * *
5306303 TCGGGGCACCAT-C-G-TCG-GAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGT
195 T-GGGGCACCATCCGGATCGAGAGAACCTGACCGACAGCATTGGGGTTCAGACGATCGGGGGGGC
*
5306364 C-GGGGG-G-TGTGCGCCCATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATAGTGGCCCCCT
259 CAGGGGGTGTTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATAGTGGCCCCCT
* * *
5306426 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCT
324 ATCCCTCAGCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
5306491 GCCAGTAGCCATTAAAGTGTCTGAAATGCGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACA
389 GCCAGTAGCAATTAAAATGTCTGAAACGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * ** * *
5306556 CTTCGAGTTTTTAGCTGAATTTTTTTGTGTGTGCCAACAAAAACACAAGGATCACATCTACCAAG
454 CTTCG-GGTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAACAAAAGGATAACATCTACCAAG
*
5306621 TTTGGGGCCAAAACTCCTTCT-GAAAAAA-TTAAAAAAATCCTAAACCGTAAAAAGTTTTAAAAA
518 TTTGAGGCCAAAACT-CTTCTCGAAAAAATTTAAAAAAATCCTAAACCGTAAAAAGTTTTAAAAA
*
5306684 TCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
582 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
5306749 TATGAGTTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATCTGCCTAAACCCAC
647 TATCAATTTACAAGACATAAAAATGGCATTGGCAGGCAAAAATATGAAGATCTGCCTAAACCCAC
* ** * *
5306814 CTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTGTCTGGCCGGTGTAGTGCCCGCCCGTC
712 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * * *
5306879 CGCTTGTTTTGA-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACC
777 CGCTCG-TTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCGGAACAGACC
*
5306943 GAGGGTTGCGGTAG
841 GAGGGTTGCAGTAG
5306957 CACATGCTAG
Statistics
Matches: 759, Mismatches: 82, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
883 443 0.58
884 78 0.10
885 9 0.01
886 40 0.05
889 3 0.00
891 1 0.00
894 1 0.00
896 3 0.00
897 176 0.23
898 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
CCCCGACTTGCGCATCCCACCCCTTCGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACC
AGACCAAGGGTCGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCT
GGGGCACCATCCGGATCGAGAGAACCTGACCGACAGCATTGGGGTTCAGACGATCGGGGGGGCCA
GGGGGTGTTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATAGTGGCCCCCTAT
CCCTCAGCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCAATTAAAATGTCTGAAACGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGGGTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAACAAAAGGATAACATCTACCAAGTTT
GAGGCCAAAACTCTTCTCGAAAAAATTTAAAAAAATCCTAAACCGTAAAAAGTTTTAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATC
AATTTACAAGACATAAAAATGGCATTGGCAGGCAAAAATATGAAGATCTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
CGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCGGAACAGACCGAGGG
TTGCAGTAGGAGGATCGGTAGTACGTAGTGGGGGAACCGGCTGATC
Found at i:5307813 original size:26 final size:26
Alignment explanation
Indices: 5307777--5307829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5307767 GTTGACTTAG
5307777 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5307803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5307829 G
1 G
5307830 ATTGCACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5309128 original size:26 final size:24
Alignment explanation
Indices: 5309077--5309135 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 24
5309067 TTTTGGGGCC
*
5309077 AAAATCCT--ACCGAAAAATTTTA
1 AAAATCCTGAACCGAAAAAGTTTA
5309099 AAAATCCTGAACCGTAAAAAGTTTA
1 AAAATCCTGAACCG-AAAAAGTTTA
*
5309124 GAAAATCATGAA
1 -AAAATCCTGAA
5309136 AATAGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 8 0.26
24 4 0.13
25 9 0.29
26 10 0.32
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (24 bp):
AAAATCCTGAACCGAAAAAGTTTA
Found at i:5309517 original size:847 final size:850
Alignment explanation
Indices: 5306892--5311150 Score: 4848
Period size: 847 Copynumber: 4.9 Consensus size: 850
5306882 TTGTTTTGAC
* * *
5306892 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGCGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* ** * *
5306957 CACATGCTAGGCTCCAGCATGTGCTGGTGCCGTATTTTTCTTCGTCCGGGCACCATCACGGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAT--C--G-G-
*
5307022 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGTTGTGCG
125 AT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGT-GCCGGGGGG-TGTGCG
* * *
5307087 CATAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCT
185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT
* * * * * *
5307152 CAAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCTTTAAA
249 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
*
5307217 GTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
314 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-
* *
5307282 GAAA-TTTTTTGTTCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACT
378 GAAATTTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAATTTTGCGGCCAAAA-T
*
5307346 CCTTTCGAAAAAATTTTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAA
441 CCTTCCGAAAAAATTTTAAAAA-TCCCGAACCGTAAAAAGTTT-AAAAATCATGA-AAATAGAAA
* * *
5307411 ACGAGTCGTTTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCC
503 ACGAGTCG-TCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
5307476 ATAAAAATGGCATTGGCAGGTAGAAATAT-AAGGATGTGCCTAAACCCACTTACCACCCTATCGA
567 ATAAAAATGGCATTGGCACGTAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
5307540 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTTGTTTCA
631 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT--C--ATTTCG
* * * *
5307605 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTAAGGGTTGCGGC
692 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACTGAGGGTTGCGGT
* * * * * *
5307670 AGCAGGATTGGCAGCACGTAGAAGGGGACCCGATCGATCCCCGACTTACGCATCACACCCCTCTA
756 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG-CTTACGCATCTCACCCCTCTG
* * *
5307735 GCTGGCTGAGCGCTCGCACGCTCGTTTCGTG
820 GCCGGCTGAGCGCCCGCACGCTCGTTTCATG
*
5307766 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G-
* *
5307831 TTGCACCAGACTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTC
48 --G-A-C---C-GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * *
5307896 CTTCATCGGGGCACCATTATCGGAGCATCGTCAGAGAACCTGACCGACAGCATTGAGGTT-C--C
105 CTTCATCGGGGCACC---ATC-G-G-ATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCAGC
* *
5307958 GA-C--GAT--CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
161 GATCGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
5308018 GGCCCTCTATCGCTCATCAAACTTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
226 GGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
*
5308083 GGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
290 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
5308148 CTTGTACACTTCGAGTTTTTAGCTGAAA-TTTTTTGTTCATGCCAAAAAAATTACAA-GATCACG
355 CTTGTACACTTCGAGTTTTTAGC-GAAATTTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACG
* *
5308211 TCTACCAAGTTTGCGGCCAAACTCCTTCCGAAAAAATTTTAAAAAGTCCCGAACCGTAAAAAGTT
418 TCTACCAATTTTGCGGCCAAAATCCTTCCGAAAAAATTTTAAAAA-TCCCGAACCGTAAAAAGTT
* * *
5308276 TCAAAAATCATGACAATAGAAAACGAGTCGTTTTGCCATGAAACATCACGTGAAGGCTTAAGGGA
482 T-AAAAATCATGAAAATAGAAAACGAGTCG-TCTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
5308341 CCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
545 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* * * * *
5308406 ACTCACCTACCACCCGATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACG--G-G--CA
610 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
** ** * *
5308466 CTTGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGATCAGACT
675 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-
* * * ** * * *
5308530 GGACTGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGAAGGACCAGGCCGATCCCCAGCTTG
739 GGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTA
* * * * *
5308595 CGCATCTCGCCCTTCTGGCCGGTTGAGTGACCGCACGCTCGTTTCATG
803 CGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* *
5308643 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * * *
5308708 CACATGCTGGGCTCAGCCATGTGCT-ATGCCGTATTTTTCTTCACCGGGGCACCATC-G-TCGGA
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGGATCGGA
* *
5308770 GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCAGGGTGCCGGGGGGGTGTGTGCACATGATGT
131 GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGTGCC-GGGGGGTGTGCGCACATGATGT
** * *
5308835 GCGATGGGTGCTGGTACTTCACCCTTATATTGGTGCCCTATCCCTAATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
** ** *
5308900 TGCTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5308965 T-GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGAAATTTTTTT
* * *
5309029 GTGCATGCCAACAAAAATACAAGGATCACGTCCACCAATTTTGGGGCCAAAATCCTACCG-AAAA
389 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAATTTTGCGGCCAAAATCCTTCCGAAAAA
*
5309093 ATTTTAAAAATCCTGAACCGTAAAAAGTTTAGAAAATCATGAAAATAGAAAACGAGTCGTCTGCC
453 ATTTTAAAAATCCCGAACCGTAAAAAGTTTA-AAAATCATGAAAATAGAAAACGAGTCGTCTGCC
5309158 ATGAAACTTCACGTG-AGGCTTAA-GGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATT-
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * *
5309219 GCATACAGAAATATGAGGA-GCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTA
582 GCACGTAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
5309283 TCCTGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATAT
646 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
** * * * *
5309348 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCCGTAGTAGGATCGGTACCACGC
711 GGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* *
5309413 AGAGGGGGACCCGACCGATACCCGTCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
775 AGAGGGGGACCCGACCGATCCCCG-CTTACGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCAC
*
5309478 GCTCGTTTCGTG
839 GCTCGTTTCATG
* * * *
5309490 GGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* *
5309555 CACATGCTGGGCTCGGGCATGTGCTGGTGCAC--ATTTTTCTTCATCGAGACACCATCGTCGGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGC-CGTATTTTTCTTCATCGGGGCACCA---TC-G-G
* * * * * *
5309618 CATCGTCGGAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGTG
125 -A---TCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGTGCCGGGGGGTGTGCG
*
5309683 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCT
185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCT
* *
5309748 CGAAAACTCACACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
249 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
*
5309813 GTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
314 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-
* * * * ** *
5309878 G-AATTTTTTTATGCATGCCAACAAAAATACAAGGGTCATGTCTTCCAAGTTTTTTAGGCAAAAA
378 GAAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAA--TTTTGCGGCCAAAA
* *
5309942 TCCTTCCGAAAAAATTTTAAAAAATCCCCGAACCATAAAAAGTTTTTAAAATCATGAAAAATAGA
440 TCCTTCCGAAAAAATTTT-AAAAAT-CCCGAACCGTAAAAAG-TTTAAAAATCATG-AAAATAGA
**
5310007 AAACGAGTCGTCCTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
501 AAACGAGTCGT-CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
5310072 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
565 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * **
5310137 ATCCATGGCTTGTGCATGCCGTCTCTCTGACAAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTC
630 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCATTTC
* * * * * *
5310202 GTTGGTTGGCTTCGACATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTGTGG
691 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTTGCGG
* * * * *
5310267 CT-GCAGGATCAGCAGCACGCAGTGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTC
755 -TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTACGCATCTCACCCCTC
* *
5310331 TGGTCGGCTGAGCGCCCGTACGCTCGTTTCATG
818 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
*
5310364 GGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA
* * * * *
5310429 TTGGCCGGACCGAGTGTTGCGGCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTC
50 ----CC-GA--G-G-GTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
* * * **
5310494 TTCGTCGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACCAGCGGCATTAGGGTTCCAATG
106 TTCATCGGGGCACCAT---C-G-G-ATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCAGCG
* * * *
5310559 ATCGGGGGGCCGAGGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTT-GCCC------T-
162 ATCGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5310616 ----CTATCCCTCAT-AAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
227 GCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
* * ** * *
5310676 TTTGCTACCGGTAGTTATTAAAGTGTCTGAAGTGGGGACAGTTTTTTCAAATGGTCACAAAATCT
292 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
**
5310741 TGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATTT
357 TGTACACTTCGAGTTTTTAGC-GAAATTTTTTTGTGCATGCC--AAAAAAATACAAGGATCACGT
* * ** * * * * * *
5310805 CTACCAAGTTTCGGGGGGAAAATTCTTCCAAAAAAATTTTAAGAAATCACAAACCGCAAATAGTT
419 CTACCAA-TTTTGCGGCCAAAATCCTTCCGAAAAAATTTTAA-AAATCCCGAACCGTAAAAAGTT
* * * * *
5310870 TCGAAAATCGTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGTCTTAAGGGA
482 T-AAAAATCATGAAAATAGAAAACGAGTCGTC-TGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
5310935 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAA
545 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* *
5311000 ACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG
610 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* ** **
5311065 TCCGCCTACTCATTTCGTCCTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
675 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* *
5311130 AGACCGAGGGTTGCGGTAGCA
739 GGACTGAGGGTTGCGGTAGCA
5311151 CATGCTAGGC
Statistics
Matches: 2939, Mismatches: 313, Indels: 261
0.84 0.09 0.07
Matches are distributed among these distances:
839 24 0.01
840 2 0.00
841 71 0.02
842 17 0.01
843 28 0.01
844 10 0.00
845 22 0.01
846 96 0.03
847 289 0.10
848 176 0.06
849 3 0.00
850 27 0.01
851 34 0.01
852 1 0.00
853 1 0.00
855 1 0.00
856 1 0.00
857 3 0.00
858 173 0.06
859 98 0.03
860 1 0.00
861 18 0.01
862 9 0.00
863 7 0.00
864 23 0.01
865 22 0.01
866 19 0.01
867 8 0.00
868 27 0.01
869 11 0.00
870 77 0.03
871 1 0.00
873 2 0.00
874 225 0.08
875 7 0.00
876 4 0.00
877 137 0.05
878 43 0.01
879 75 0.03
881 2 0.00
882 10 0.00
883 164 0.06
884 23 0.01
885 174 0.06
886 34 0.01
887 166 0.06
888 58 0.02
889 31 0.01
890 216 0.07
891 8 0.00
892 1 0.00
894 5 0.00
895 3 0.00
896 2 0.00
897 10 0.00
898 5 0.00
899 86 0.03
900 145 0.05
901 1 0.00
903 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (850 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGGATCGGA
GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGTGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGAAATTTTTTTGT
GCATGCCAAAAAAATACAAGGATCACGTCTACCAATTTTGCGGCCAAAATCCTTCCGAAAAAATT
TTAAAAATCCCGAACCGTAAAAAGTTTAAAAATCATGAAAATAGAAAACGAGTCGTCTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCCGCTTACGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATG
Found at i:5310405 original size:26 final size:26
Alignment explanation
Indices: 5310375--5310427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5310365 GTTGACTTAG
*
5310375 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5310401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5310427 G
1 G
5310428 ATTGGCCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5311059 original size:883 final size:891
Alignment explanation
Indices: 5309501--5311142 Score: 2324
Period size: 885 Copynumber: 1.8 Consensus size: 891
5309491 GCTGACTTAG
5309501 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5309566 CTCGGGCATGTGCTGGTGCACATTTTTCTTCATCGAGACACCATCGTCGGAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCACATTTTTCTTCATCGAGACACCATCGCCAGAGCATCGCCAGAGAA
* * ** * *
5309631 CCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGTG
131 CCTGACCGACGACATTAGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGTG
5309696 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAAAACTCACAC
196 AT-GGTGCTGG-ACTTGG--C-TATATTGGCCCTCTATCCCTCATCAAACCTCGAAAACTCACAC
* * *
5309761 CCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
5309826 GGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
321 GGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * * ** *
5309891 CATGCCAACAAAAATACAAGGGTCATGTCTTCCAAGTTTTTTAGGCAAAAATCCTTCCGAAAAAA
386 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTCGAGGCAAAAATCCTTCCAAAAAAA
* * * **
5309956 TTTTAAAAAATCCCCGAACCATAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCCT
451 TTTTAAAAAATCCACAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCCT
**
5310021 GCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
5310086 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTG
581 TTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCG
* * ** *
5310151 CATGCCGTCTCTCTGACAAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTTGGTTGGCTTCG
646 CATCCCGTCTCTCTGACAAGCGTAGT----GCCCGCCCGCCCACTCATTTCGTCCGTTGGCTTAG
* * *
5310216 ACATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTGTGGCTGCAGGATCAGCA
707 ACATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCTGCAGGATCAGCA
5310281 GCACGCAGTGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGC
772 GCACGCAGTGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGC
5310346 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
837 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
* * * *
5310401 GCATACGGAGTTCATTCCCAGTCTAAGATTGG-CCGGACCGAGTGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5310465 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGC-ACATTTTTCTTCATCGAGACACCATCGCCAGAGCATCGCCAGAGA
* *
5310530 ACCTGACC-AGCGGCATTAGGGTTCCAATGATC-GGGGGGCCGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGA-CGACATTAGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTG
* **
5310593 TGAT-G-GCT-G-C-TGG-TA-CTT-GCCCTCTATCCCTCAT-AAACCTCGGGAACTCACACCCC
194 TGATGGTGCTGGACTTGGCTATATTGGCCCTCTATCCCTCATCAAACCTCGAAAACTCACACCCC
* ** *
5310649 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGTTATTAAAGTGTCTGAAGTGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
5310714 CAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
324 CACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * ** *
5310779 GCCAAAAAAAAATACAAGGATCATTTCTACCAAG-TTTCGGGGGGAAAATTCTTCCAAAAAAATT
389 GCC-AAAAAAAATACAAGGATCATGTCTACCAAGTTTTCGAGGCAAAAATCCTTCCAAAAAAATT
* * * * *
5310843 TTAAGAAAT-CACAAACCGCAAATAGTTTCGAAAATCGT-AAAAATAGAAAACGAGTCGTCTTGC
453 TTAAAAAATCCACAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
* *
5310906 CATGAAACTTCGCGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
5310971 GGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCA
583 GGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCA
* ** * * * * *
5311036 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGTCCGCCTACTCATTTCGTCCTTTGGCTTAGGCATAC
648 TCCCGTCTCTCTGACAAGCGTAGTGCCCGCCCGCCCACTCATTTCGTCCGTTGGCTTAGACATAC
*
5311101 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
713 GGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTG
5311143 CGGTAGCACA
Statistics
Matches: 656, Mismatches: 83, Indels: 27
0.86 0.11 0.04
Matches are distributed among these distances:
879 70 0.11
883 163 0.25
884 21 0.03
885 174 0.27
886 42 0.06
887 2 0.00
888 2 0.00
892 3 0.00
893 1 0.00
895 1 0.00
896 3 0.00
897 1 0.00
899 81 0.12
900 92 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCACATTTTTCTTCATCGAGACACCATCGCCAGAGCATCGCCAGAGAA
CCTGACCGACGACATTAGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGTG
ATGGTGCTGGACTTGGCTATATTGGCCCTCTATCCCTCATCAAACCTCGAAAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
CAAAAAAAATACAAGGATCATGTCTACCAAGTTTTCGAGGCAAAAATCCTTCCAAAAAAATTTTA
AAAAATCCACAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCC
CGTCTCTCTGACAAGCGTAGTGCCCGCCCGCCCACTCATTTCGTCCGTTGGCTTAGACATACGGA
GTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCTGCAGGATCAGCAGCACGCAGT
GGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGTACGCT
CGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
Found at i:5312003 original size:26 final size:26
Alignment explanation
Indices: 5311967--5312019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5311957 GTTGACTTAG
* *
5311967 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5311993 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5312019 G
1 G
5312020 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5313667 original size:26 final size:26
Alignment explanation
Indices: 5313631--5313683 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5313621 GTTGACTTAG
5313631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5313657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5313683 G
1 G
5313684 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5315389 original size:26 final size:26
Alignment explanation
Indices: 5315353--5315405 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5315343 GTTGACTTAG
5315353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5315379 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5315405 G
1 G
5315406 ATCATACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5317123 original size:26 final size:26
Alignment explanation
Indices: 5317087--5317165 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5317077 GTTGACTTAG
*
5317087 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5317113 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5317139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5317165 G
1 G
5317166 ATCGGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5320528 original size:865 final size:866
Alignment explanation
Indices: 5312124--5321548 Score: 10496
Period size: 860 Copynumber: 10.8 Consensus size: 866
5312114 CGTCGAAGAA
*
5312124 CCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5312189 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
5312254 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACTAACATACAGGGATCATGTCGACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * * * * *
5312319 TGGGGCTAAAACTCTTTCCAAAAAAATTTGAAAAAATCCCAAACCGCAAAAAGTTTTAAAATTCG
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5312384 TGAAAAATAGAAAACGAATTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * *
5312449 GAATTTACAAGCCTTAAAAATGGTGTTGGCATGCATAAATATGAAGATGTGCCTAAACCAACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
5312514 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCAG-C
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCGCCCGCC
* * * * *
5312576 CGCCCGCTCGTTTCGTCAGTTGGCTTAGGTATACAGAGTTCATTTCCAGTCTAAGATCAGACCAG
456 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* ** * * *
5312641 ATCGATGGTTGCACCAGCAGGATC-AGCAGCATGCAGAGGGGGACCCGCCCGATCCCCGGCTAT-
521 ATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT-TG
* * *
5312704 CGCATCCCGCCCATCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATAC
584 CGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* ** ** *
5312769 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGATAGCAAATGCTGGGCTCGGG
649 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
5312834 CATGTGCTGGTGCCGTATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
714 CATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCA---TC---G--T---CGGAGAACCTG
* * * *
5312898 ACTGACGACATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCAAT
768 ACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGAT
*
5312963 GGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTAT
831 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * **
5312999 CCCTCATCAAACCTCGAGAACTCACACCTCCTTAAATAGCATTTGAGATTTTACAGGTTAACTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
5313064 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
5313129 TCGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAAT
131 TCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * ** *
5313193 TTGGGGATAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAGAGTTTCAAAAATC
195 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
5313258 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
260 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5313323 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCAACCT
325 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * * *
5313388 ACCACACTATCGATCCATGGCTTTCACATCCCGTTTCTCTAGTCGACGTAGTACCCGACCGCCCA
390 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-CCGCCC-
* * * * *
5313453 G-CCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATGCGAAGTTCATTCCTAGTCTAAGAT-TGAA
453 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * ** * * * *
5313516 CCAGATTGAGGGTTTCGACAATAGGATCGCCAGCACGCAGAGGGGGACTCGACCGATCCCCTGCT
517 CCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT
* * ** * *
5313581 TGCGCATCCCGCCCCTCTGGCCAGC--A-CGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGT
582 TGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCG-CACGCT-CG-T---TT---CGT--GG-GT
* * * ** *
5313642 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCG
635 TGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * *
5313707 GCAGCACATGCTAGGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGTA
693 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTC
* * ** * *
5313771 GGAGAACTTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGTTGGGGGGCTGTACGCACAT-
758 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
* * *
5313835 AT-TGTG-T-GATG--GGTAC-TGG----TA-CTTGG--------
822 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5313861 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5313926 CAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
5313991 TCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAACA-ACAAGGATCACGTCTACCAAGT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGT
* * * ** *
5314055 TTGGGGCTAAAACTCCTTCTGAAAAAAGTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATC
195 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
5314120 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTAACGTGAAGGCATAAGGGACCATTGTT
260 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5314185 TGAATTTACAAGCCATAAAAAT-GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
325 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * ** *
5314249 ACCACCCTATCGATCCATGGCTTATGCATCCCGTCTCTCTGGCCGATGTAGTG--C-TCGCCCGC
390 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCGCCCGC
* ** * *
5314311 CTGCCAACTCGTTTCATCGATTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAATG-TCAGACC
455 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCAGACC
* * ** *
5314375 AGACCGAGGGTTGCGGCAGCAGGATC-AGCAGCACGCAGAGGGGGACTCG-GTGATCC-CTAGCT
519 AGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCT
* * * *
5314437 TGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGGACGCTCATTTCGTGGGTTGACTTAGGCAT
582 TGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * **
5314502 ACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTTTGGCAGCACATGCTGGGCTCG
647 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * * * *
5314567 GGCATTTGCTGGTGCCGTATTTTTCTTCGC-CCGGGCACCATCTTCGGAGAACTTGACTGACGAC
712 GGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGAACCTGACCGACGGC
* * * * * * *
5314631 ATTGGGGTTCCGACGATGGGGGGGCCAGGGGGCTATGCACACATAACGTGCGATGGGTGCTGGTA
777 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5314696 CTTGGCCCTCATATTGGCCCTCTAT
842 CTTGGCCCTTATATTGGCCCCCTAT
*
5314721 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5314786 CAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** * *
5314851 TCAAGTTTTTAGCTGAATTTTTTTGCACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
5314916 TGGGGCCAAAACTCCTTCCGAAAAAATTTTACAAAATCCCGAACCTTAAAAAGTTTCCAAAATCG
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5314981 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
5315046 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCAACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * * *
5315111 CCACACTATGGATCCATGGCTTTCACATCCCGTTTCTCTAGTCAGCGTAGTGCCCGTCCGCCCAG
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-CCGCCC-G
* * * * * *
5315176 -CCGCCTGCTCGTTTAATCGGTTGGCTTAGGCATGCGAAGTTCATTCCTAGTCTAAGAT-TGAAC
454 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * ** * * * *
5315239 CAGATTGAAGGTT-CTGACAATAGGATCGCCAGCACGCAGAGGGGGACCCGACCTATCCCCTGCT
518 CAGATCGAGGGTTGC-GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT
* *
5315303 TGTGCATCCCGCCCCTCTGGCCA----A-------CACGCTCGTTTCGTGGGTTGACTTAGGCAT
582 TGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
5315357 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCATACTGGACCGAG
647 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C--A---GACCGAG
* * * * *
5315422 GGTTACGGCAGCACATGCTAGGCTCGGGCATGTTCTGGTGCCGTATTTTTCTTC-GTCGGGGCAC
686 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCAC
** * * * * * *
5315486 CATCGTAAGAGAACTTGGCCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGCTGTA
751 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGG-TGTG
* * *
5315551 CGCACAT-AT-TGTG-T-GATG--GGTAC-TGG----TA-CTTGG--------
814 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5315584 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5315649 CAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
5315714 TCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAACA-ACAAGGATCACGTCTACCAAGT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGT
**
5315778 TT-GGGCCTAAAACTCCTTCCGAAAAACA-TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA
195 TTGGGGCC-AAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * *
5315841 TCATGAAACATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCACTG
258 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
5315906 TTTGAATTTACAAGCCATAAAAAT-GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
323 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
5315970 CTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGTGTAGTG--C-CCGCCC
388 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCGCCC
* ** *
5316032 GCCTGCCAACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATG-TCAGA
453 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCAGA
* * * *
5316096 CCAGACCCAGGGTTGCGGCAGCAGGATC-AGCAGCACGCAGAGGGGGACTCGA-TGATCC-CTGG
517 CCAGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCTC-GG
* * * *
5316158 CTTGCGCATCCCACCCCTCTGACCGGTTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGC
580 CTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * ** **
5316223 ATACGGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGGGTTTTGGCAGCACATGCTGGGCT
645 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * * *
5316288 CGAGCATTTGCTGTTGCCGCATTTTTCTTCTC-CCGGGAACCATCATCGGAGAACTTGACTGACG
710 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGAACCTGACCGACG
* * * * * *
5316352 ACATTGGGGTTCCGACGATCGGGGGGCCAGGGGGCTGTGCACACATAACGTGCGATGGGTGCTGG
775 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
5316417 TACTTGGCCCTCATATTGGCCCTCTAT
840 TACTTGGCCCTTATATTGGCCCCCTAT
*
5316444 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5316509 CAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
5316574 TCAAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
5316639 TGGGGCCAAAACTCCTTCCGAAAAAATTTTACAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
5316704 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTATGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
5316769 GAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAAACCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
5316834 CCACACTATCGATCCACGACTTGCGCATCCCGTATCTCTGG-CGGACGTAGTGCCAGCCCGCCCA
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGG-CGTAGTGCCCG-CCGCCCG
* * * * * *
5316898 CCCGCCCCGTTCGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGAT
454 CCCG-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * *
5316963 C-GAACCGAGGGTTGC-GCAGCAGGATCGGTAGCACGCAGAGGGGGACCC-AGTCAATCCTCGAC
518 CAG-ATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCTCGGC
* * * * *
5317025 TTTCGCATCCCGCCCATCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
581 TTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * ** * ** *
5317090 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGCATACGG-AGTTCAT
646 TACGGAGTTCATTCCCAGTCTAAG-AT-CGGA--CCA-GACC-G---AGGGTTGCGGCAG--CA-
** * * * ** ** *
5317154 TCCCA-GTCTAAGATCGGACCA-GACCGAGGGATGCGGCAGCA-CATGCTGGGCTCAGGCATGTG
699 ---CATG-CTGGGCTCGG-GCATG--TGCTGG-TGC--C-GCATTTTTCT----TCA--C---T-
* * * * ** * * ** **
5317216 CTGGTGCCGCATTTTTCTTCGTCAGAGCATTGTCGGAGAACCTGACCG-A-CGGCATTGGGGTTC
743 C-GG-G--GCA----CCATCGTCGGAG-A---AC-CTG-ACC-GACGGCATTGGGGTT--CC---
*
5317279 CGACGATCGAGGGGGCCGGGGGGGGCTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
788 -GACGATCG-GGGGGCC-GGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
5317344 CTTATCTTGGCCCCCTAT
849 CTTATATTGGCCCCCTAT
* *
5317362 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGGGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* ***
5317427 CGGTAGCCATTAAAGTGTCTGAAATGGGGATGTTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
5317492 TCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACTATGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5317557 TGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-CAAAAGTTTCGAATATCA
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5317621 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
5317686 GAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * **
5317751 CCACCCTATCGATTCACGGCTTACGCATCCCGTCTCTCTGG-CGGGTGTAGTGCCCGCCAGCCAA
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GGCGTAGTGCCCGCC-GCCCG
** * ** * *
5317815 CCCATCCGCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCACACC
454 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * *
5317880 GGACCTAGGGTTACAGCAGTAGGATCGATAGCACACAGAGGGAGACCCGACCGATCCTCGGCTTG
519 AGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * * * * * * * *
5317945 CGCATCCCTCCCCTCTGGTC-GGTGAGTGCCCGAACGTTCGTTTCATGAGTTAACTTAGGCATAC
584 CGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
5318009 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGATGCGGCAACACATGCTGGGCACAGG
649 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
5318074 CATGTGCTGGTGCCACATTTTTATTC-GTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
714 CATGTGCTGGTGCCGCATTTTTCTTCACTCGGGG---CA----C----CATCGTCGGAGAACCTG
* * * * *
5318138 ATCGACGGCATTGGGGTTCCGGCGATTGGAGGGGCCAGGGGGGTTGTGCGCACATGATGTGTGAT
768 ACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGGTGTGCGCACATGATGTGCGAT
* *
5318203 TGGTGCTGATACTTGGCCCTTATATTGGCCCCCTAT
831 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5318239 CCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
5318304 CGGTAGCCATTAAAGTGTTTGAAATGGGGACGCTTTTTTCAAATGCTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5318369 TCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
5318434 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCG
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * * *
5318499 TGAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTTTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
5318564 GAATTTACAAGCAATAAAAATGTCATTGGCATGCAAAAATATGAAGATGTTCCTAAACCCACCGA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
5318629 CCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGC
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-CCG--C-C
** * *
5318694 CAGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAG-TCAG
452 C-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * * **
5318758 ACCGGACCGAGGTTTGCGATAGCAGGATCGACAGCACGCAAAGAGGGACCCGGTCGATCCTCGGC
516 ACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGC
** * * * *
5318823 TTATGCATCCC-CCCCTCTGGCCGGCTAAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCA
581 TTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
5318887 TATGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGATC
646 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * *
5318952 GGGCATGTGCTGGTGCCGCATTTTTCTTTGC-CTGGGCACCATCGCCGTAGAACCTGACCGACGG
711 GGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGAACCTGACCGACGG
* *
5319016 CA-TGGGGTTCCGGCGATCAGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
776 CATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
5319080 TAGTTGGCCCTTATATTGGCCCCCTAT
840 TACTTGGCCCTTATATTGGCCCCCTAT
* *
5319107 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
5319172 CAGTAGCCACTATAGTGTTTAAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTTGTACCA
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTA-CA
* *
5319237 CTTCGAGTTATTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
129 CTTCGAGTT-TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
5319302 GTTTGGGGTCAAAAATCCTTCTC-AAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAA
193 GTTTGGGGCCAAAACTCCTTC-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
5319366 ATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
257 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
5319431 GTATGAATTTACAAGCCAT-TAAATGCCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCA
322 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** * * * *
5319495 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGTCGACATACTGCCCTCCTGC
387 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC-GC
* * * * *
5319560 CCGCCCGCCCGCTTGTTTCTTCGGTTGGCTTAGGCGTACGAAGTTCATTCCCAGTCTAAGATCAA
451 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
5319625 ACCAGATCGATGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGACCCGCCCGGTCCTCGGC
516 ACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGC
* * * * * * ** *
5319690 TTGTGCATCTCACCCCACTGCCCAGCTGAGCGCTCGCACGCTTGTTTCGTAAGTTGACTTGGGCA
581 TTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * * *
5319755 TACGGAGTTCATTCCCAATCTAGGATCGGATCAGACCGAGGGTTCCGGCAGCACATTCTGGGCTT
646 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
5319820 GGGCATGTGCTGGTGCCGTATTTTTCTTCACT-TGGGCACCATCGTCGGAGAACCTGACCGGCGG
711 GGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGAACCTGACCGACGG
* *
5319884 CATTGAGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
776 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
5319949 ACTTGGCCCTTATATTGGCCCCCTAT
841 ACTTGGCCCTTATATTGGCCCCCTAT
* * *
5319975 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGAATTTGAGATTTTACAGGTTTGCTAC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
5320040 CAGTAGCCACTATAGTGTTTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5320105 TCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5320170 TGGGGTCAAAAATCCTTCCCAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCA
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5320235 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** * *
5320300 TAATTTACAAGCCAT-TAAATTCCATTGGCACGCAGAGATATGAAGATGTGCCTAAACCCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
5320364 CCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTACCCTCCTGCTCGC
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC-GCCCGC
* * * *
5320429 CGGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
455 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
5320494 GATCGATGGTTGCGGCAGTAGGATCGATAGCATGCAGAGGGGGACCC-ACCTGATCCCCGGCTTG
520 GATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC-GATCCTCGGCTTG
* * * * **
5320558 TGCATCTCACCCCACTGGCCAGCTGAGCGCTCGCACGCTCGTTTCGTAAGTTGACTTGGCATACA
584 CGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T----T--A
* * *
5320623 GAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAATCTAGGATCGGACCGGACCGAGGGT
642 G-G--CA-T----A-C---G-----G-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
*
5320688 TGCGGCAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCAT
689 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCAT
* * *
5320752 CACCGAAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGATGATAGGGGGGCCCGGGG
754 ---C---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CC-GGG
* * *
5320817 GGGGTGTGCGCACAAGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTAT
806 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5320878 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAGTTGAGATTTTACAGGTTTGTTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5320943 CAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACT
66 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5321008 TCGAGTTTTTAGCTGAATTTTTTTTTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * **
5321073 TGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAATTCTGAACCATAAAAAGTTTTGAAAATCA
196 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5321138 TGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACATCACGTGAAGGCTTAAGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
5321203 GAATTTACAAGCCATAAAAATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACTTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * * *
5321268 CCACCCTATCGATCTACGACTTGTGCATCCCGACTCTCTAGCCAGCGTAGTGCCCGCCCCGTCCG
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG--CCGCCCG
* * * ** *
5321333 CCCGTCCGCTCGTTTCATCGGTTGGCATAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGACT
454 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
5321398 AGATCGAGGGTTAG-AGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTT
519 AGATCGAGGGTT-GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTT
* * * * *
5321462 ACGCATCGCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
583 GCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
5321527 CAGAGTTTATTCCCAGTCTAAG
648 CGGAGTTCATTCCCAGTCTAAG
5321549 CATACGGAGT
Statistics
Matches: 7320, Mismatches: 931, Indels: 593
0.83 0.11 0.07
Matches are distributed among these distances:
840 29 0.00
841 146 0.02
842 102 0.01
843 2 0.00
844 7 0.00
846 10 0.00
847 6 0.00
848 4 0.00
849 2 0.00
851 4 0.00
852 8 0.00
853 1 0.00
854 2 0.00
855 52 0.01
856 34 0.00
857 125 0.02
858 101 0.01
859 14 0.00
860 634 0.09
861 257 0.04
862 401 0.05
863 314 0.04
864 10 0.00
865 605 0.08
866 238 0.03
867 77 0.01
868 566 0.08
869 43 0.01
870 134 0.02
871 195 0.03
872 3 0.00
873 1 0.00
874 3 0.00
875 409 0.06
876 23 0.00
877 290 0.04
878 214 0.03
879 133 0.02
880 39 0.01
881 290 0.04
882 86 0.01
883 54 0.01
884 9 0.00
885 11 0.00
886 7 0.00
887 5 0.00
888 2 0.00
889 14 0.00
890 93 0.01
891 4 0.00
893 3 0.00
894 101 0.01
895 2 0.00
896 4 0.00
897 5 0.00
898 4 0.00
899 3 0.00
900 6 0.00
901 42 0.01
902 10 0.00
903 373 0.05
904 98 0.01
905 156 0.02
906 8 0.00
907 8 0.00
908 2 0.00
909 5 0.00
910 4 0.00
911 5 0.00
912 2 0.00
914 3 0.00
915 10 0.00
916 126 0.02
917 252 0.03
918 275 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (866 bp):
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCGCCCGCC
CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCG
CATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTAT
Found at i:5320653 original size:26 final size:26
Alignment explanation
Indices: 5320616--5320666 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5320606 AGTTGACTTG
5320616 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5320642 GCATAC-GTAGTTCATTCCCAATCTA
1 GCATACAG-AGTTCATTCCCAATCTA
5320667 GGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5321551 original size:26 final size:26
Alignment explanation
Indices: 5321522--5321574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5321512 GTTGACTTAG
5321522 GCATACAGAGTT-TATTCCCAGTCTAA
1 GCATACAGAGTTCT-TTCCCAGTCTAA
*
5321548 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCTTTCCCAGTCTAA
5321574 G
1 G
5321575 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCTTTCCCAGTCTAA
Found at i:5322363 original size:26 final size:26
Alignment explanation
Indices: 5322327--5322378 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5322317 TTGACTTAGT
5322327 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
5322353 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5322379 ACCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5323752 original size:896 final size:898
Alignment explanation
Indices: 5321848--5324143 Score: 3317
Period size: 896 Copynumber: 2.6 Consensus size: 898
5321838 AAGTTTGGTT
* *
5321848 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
1 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
*
5321913 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
5321978 AAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
131 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
5322043 CACAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACGTCCC
196 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
* * * * * *
5322108 GTCTTTTGGGCCGTCGTA--G-T----GCCCGCCCGCCCGCCCGTTCATTCCGTAGGTTGGCTTA
261 GTCTTCT-GGCCGACGTAGTGCTCGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
5322166 GGCATACAGAGTTCATTCCAAGCCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGT
325 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* **
5322231 AGCACGCAGAGAGGGACCC-AGTCGATCCCCGACTTGCGCATCCCGCACCTCTGGCCGGCGGAGC
390 AGCACGCAGAGAGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTAGAGC
* * *
5322295 GCC-TGCATGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATATG
454 GCCGCGCA--CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * *
5322359 GAGTTCATTCCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAACAGATGCTGGGCTCGAGC
517 GAGTTCATTCCCAGCCTAAGACCAGATCGGACCGAGGGTTACGGCAACACATGCTGGGCTCGAGC
* *
5322424 ATGTGCTGGTATCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
582 ATGTGCTGGTACCGTATTTTTCTTCGTC-GGGCACCATCGCCGGAGCA-CACC-G-GAACCTGA-
* * *
5322489 TGGCAGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGAGGGGTGTGCGCACATAATGTGCGATGG
642 --GCAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATAATGTGCGATGG
*
5322554 GTGCTGGTACTTTGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
705 GTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
5322619 TTAAAGAGTAGTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
770 TTAAAGAGTAGTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
5322684 ACTTTTTTCAAATGGTCAAAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTATGCATG
835 ACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGAATG
* *
5322748 CCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTA
1 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
** * *
5322813 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
5322878 AAACTTAACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
131 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
5322943 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACAGCTTGCGTATCCC
196 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
5323008 GTCTCTCTGGCCGACGTAGTGCCCGCTCGCCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
261 GTCT-TCTGGCCGACGTAGT----GCTCG-CAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
5323073 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGATTGCGGCAGCAGGA
320 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
* * * * *
5323138 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTT
385 TCGGCAGCACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTA
* * *
5323203 GAGGGCTCGCGCACTCGTTTTGTGGGTTGACTTAGGCAAACGGAGTCCATTCCCAGTCTAAGCAT
450 GAGCGC-CGCGCACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** * * * *
5323268 ATGGAGTTCATTCCCAGCCTAAGGTCGGATCGGATCGAGGGTTACGGCAGCACATGCTGGG-TTG
514 ATGGAGTTCATTCCCAGCCTAAGACCAGATCGGACCGAGGGTTACGGCAACACATGCTGGGCTCG
* * * *
5323332 GGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GG-AGCATCGCCGGAG-A-ACC-TAACC-GA-C
579 AGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGCACCATCGCCGGAGCACACCGGAACCTGAGC
*
5323390 AGCATTAGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
644 AGCATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATAATGTGCGATGGGTGC
*
5323454 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
709 TGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
5323519 AGAGTAGTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
774 AGAGTAGTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
5323584 TTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGAATG
839 TTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGAATG
*
5323645 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTA
1 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
*** *
5323710 AAAAATTTTGAACCGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATG
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
5323774 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
131 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
5323839 CATAGAAATATGAAGATGTGCCTAAACTCACCTGCCGCCCTATCGATCCAC-GACTTGCGCATCC
196 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGCGCATCC
* * * * * *
5323903 CGTCTTTCTGGCCGACATAGTGCTCGCA---CGCCTGTCCACCCGCTCGTTTTGTCGGTTGACTT
260 CGTC-TTCTGGCCGACGTAGTGCTCGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
5323965 AGGCACACGGAGTACATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGTTAGCAGGATCGA
324 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGG
* * * *
5324030 CAGCACGCAGAGAGGGACCCGATTGATCCCCGTCTTGCGCATCCCGCCCCTCAGGCCTGTAGAGC
389 CAGCACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTAGAGC
*
5324095 GCC-CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCC
454 GCCGCGCA--CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
5324144 TAGACCAAGA
Statistics
Matches: 1256, Mismatches: 119, Indels: 54
0.88 0.08 0.04
Matches are distributed among these distances:
886 4 0.00
887 1 0.00
888 180 0.14
891 2 0.00
892 5 0.00
895 1 0.00
896 363 0.29
897 135 0.11
900 256 0.20
901 4 0.00
902 4 0.00
905 3 0.00
906 1 0.00
907 2 0.00
908 12 0.01
909 2 0.00
911 29 0.02
912 247 0.20
913 2 0.00
914 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
GTCTTCTGGCCGACGTAGTGCTCGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
GCACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTAGAGCGC
CGCGCACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
TCATTCCCAGCCTAAGACCAGATCGGACCGAGGGTTACGGCAACACATGCTGGGCTCGAGCATGT
GCTGGTACCGTATTTTTCTTCGTCGGGCACCATCGCCGGAGCACACCGGAACCTGAGCAGCATTA
GGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACT
TGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTAG
TTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGAATG
Found at i:5324232 original size:159 final size:159
Alignment explanation
Indices: 5323943--5324305 Score: 446
Period size: 159 Copynumber: 2.3 Consensus size: 159
5323933 CCTGTCCACC
* * * * * *
5323943 CGCTCGTTTTGTCGGTTGACTTAGGCACACGGAGTACATTCCCAGTCTAAGATCGGACCGGACTG
1 CGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGACCAAGATCGGACCAGACTG
* * * ** *
5324008 AGGGTTGTGTTAGCAGGATCGACAGCACGCAGAGAGGGACCCGATTGATCCCCGTCTTGCGCATC
66 AGGGCTGTGTCAGCAGGATAGACAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATC
5324073 CCGCCCCTCAGGCCTG-TAGAGCGCCCGCA
131 CCGCCCCTCAGGCC-GATAGAGCGCCCGCA
* * * *
5324102 CGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGACCAAGATTGGACCAGACTG
1 CGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGACCAAGATCGGACCAGACTG
* * * * *
5324167 AGGGCTGCTG-CAGCAGGATTAG-TAGCATGTAGAGGGGGACTCGACCGATCCCCGACTTGCGCA
66 AGGGCTG-TGTCAGCAGGA-TAGACAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCA
* *
5324230 TCCCGCCCCTCTGGCCGATTGAGCGCCCGCA
129 TCCCGCCCCTCAGGCCGATAGAGCGCCCGCA
*
5324261 CGCTCGTTTAT-TAGGTTGACTTAAGCATACGGAGTTCATTCCCAG
1 CGCTCGTTT-TGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG
5324306 TCTAAGCATA
Statistics
Matches: 174, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
158 1 0.01
159 168 0.97
160 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGACCAAGATCGGACCAGACTG
AGGGCTGTGTCAGCAGGATAGACAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATC
CCGCCCCTCAGGCCGATAGAGCGCCCGCA
Found at i:5324320 original size:26 final size:26
Alignment explanation
Indices: 5324282--5324337 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5324272 TAGGTTGACT
5324282 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
5324308 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5324334 TAAG
1 TAAG
5324338 ATCGAATCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:5325201 original size:26 final size:26
Alignment explanation
Indices: 5325161--5325213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5325151 GTTGACTTAG
*
5325161 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
*
5325187 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
5325213 G
1 G
5325214 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:5326965 original size:26 final size:26
Alignment explanation
Indices: 5326928--5326980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5326918 GTTGACTTAG
*
5326928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5326954 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5326980 G
1 G
5326981 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5330276 original size:26 final size:26
Alignment explanation
Indices: 5330246--5330298 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5330236 GTTGACTTAG
5330246 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
5330272 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5330298 G
1 G
5330299 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5333910 original size:26 final size:26
Alignment explanation
Indices: 5333874--5333926 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5333864 GTTGACTTAG
5333874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5333900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5333926 G
1 G
5333927 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5334803 original size:26 final size:26
Alignment explanation
Indices: 5334765--5334817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5334755 GTTAACTTCG
5334765 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
* *
5334791 GCATATGGCGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
5334817 G
1 G
5334818 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:5335256 original size:903 final size:901
Alignment explanation
Indices: 5330538--5344657 Score: 17008
Period size: 903 Copynumber: 15.7 Consensus size: 901
5330528 CACACCCCCT
* * * *
5330538 TAGCCGTTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGATCATAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5330603 AGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** *
5330668 GGCCAAAACTCC-TTGGAAAAAAATTTTAAAATATCTTGAACCGC-AAAAGTTTTGAAAATAATG
131 GGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5330731 AAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
5330796 ATTTACAGGCCATAAAAATGGCATTGGCAAGCAGAAAAATGAAGATGTGCCTAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
5330861 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCCCACCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCC
* * *
5330926 GCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGA
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGA
* * * * *
5330991 -TCGAGGGTTGTGGCAGTAAGATCGGTAG-ACGTAGAGGGGGA-CC-TTCTGATCCCCGGCTTGT
453 CT-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTG-
* * * * * * * *
5331052 TGCAT-CCGCCTCTCGGCGCCGGGTGTAAGCGGCCCGTACGCTCATTTCGTGGTTGGTGATTTTA
515 CGCATCCCGCCCCTCTG-GCCGGCTG--AGC-GCCCGCACGCTCGTTTCGTGG--GTTGA-CTTA
* *
5331116 GGCCATATGGAGTTCATTTCCCAGTCTAAGGCATTACGGAGGTTCATT-CCAG-CTTAAGATTAG
573 GG-CATACGGAGTTCA-TTCCCAGTCTAA-GCA-TACGGA-GTTCATTCCCAGTC-TAAGATCAG
* * * * * *
5331179 -CCGGACCGAGGGTTGCGTTCAGCACATGCATGGGCACAAGCATGTCCTGGTACCGCATTTTTCC
632 ACCAGACCGAGGGTTGCG-GCAGCACATGC-TGGGCTCGAGCATGTGCTGGTGCCGCATTTTT-C
** * * * *
5331243 TTCACCGGGGCACCCCATCGTCGGAGCATCACCGGATGAACCTGACCGG-AGCATTTGGGGTTCC
694 TTCGTCAGGGCA--CCATCGCCGGAGCATCGCCGGA-GAACCTGACCGGCGGCA-TTGGGGTTCC
* * *
5331307 GGCGATCGCGGGGGGCCGGGGGAATGTGCGCCACATTGATGGGCGATGGGTGCTGGTACTTGGCC
755 GACGATCG-GGGGGGCCGGGGG-GTGTGCG-CACA-TGATGTGCGATGGGTGCTGGTACTTGGCC
* * **
5331372 CTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTTACACCCTTTTAAAGAGCATTTGAG
816 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
5331437 ATTTTACAAGTTTGCTGCCAG
881 ATTTTACAGGTTTGCTGCCAG
* *
5331458 TAG-CATTTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTCGTACACTAT
1 TAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-T
* * *
5331522 -GAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT
64 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
5331586 GGGGCCAAAACAT-CTTCCGAAAAAATTTTAAAAAATCAC-GAACCGCAAAAAGTTTCCAAAATC
129 GGGGCCAAAAC-TCCTTTCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATC
*
5331649 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTA
192 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
5331714 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
257 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
5331779 ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCA
322 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGC-CCG
* * * *
5331843 CCCGCCCGCTCGTTTCATCAGTTGGCGTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACC
386 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACC
* * * * * *
5331908 AGACCGAGGGTTGTGGCAGCA--A---GCAGCACCCAGTGGGAGACCCCATCGATCCCCAGCTTG
450 AGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * ** * *
5331968 CGCGTCCCACCCCTCTGGCTTGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATAC
515 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *** *
5332033 GGAGTTCATTCCTAGTCTGAGCATACGGAGTTCATTGCCAGTTTAAGATCAGATGGGACAGAGGG
580 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * *
5332098 TTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATC-GAGGCACCA
645 TTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAG-GGCACCA
* * * *
5332162 TCACCGGAGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGGG
709 TCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
5332227 GGGTGTGCGCAAATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTC
774 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
5332292 ATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAG
839 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * ** **
5332355 TAACAATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATCATTTCAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5332420 AGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
5332485 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGA
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
*
5332550 AAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
196 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
5332615 TTTACAAGCCA-AACAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
261 TTTACAAGCCATAA-AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * ** **
5332679 ACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTCACTGATGTAGTG--C-CCGCCTTCCCG
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCG
* ** *
5332741 CCCGTTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATT-CTAGTCTAAGATCGAACCAGAC
390 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGAC
* * * * * * *
5332805 TGAGGGTTGCGACAGCTGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCTGCTTGCGCA
454 TGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * * * * *
5332870 TCCTGCCCCTCGGGTCGGCTGAGCGCCCACACGCTCGTTTCATAGGG-TGACTTAGGCATGCAGA
519 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACGGA
* *
5332934 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGCCCAGATCGAGGGTTC
583 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG---
* * * * ** * * *
5332999 ATTCCCAGATCGGCCCA-GTCTAAGCATACGGAGTTCAT-TCCCAGTTGCGACAGCACATGTTGG
645 -TT-GC-G-GCAGCACATG-CTGGGC-T-C-GAG--CATGT-GCTGGTGC--C-G--CAT-TT--
* ** * * *
5333062 GCTCGAGCATGTGCTGGTGCTA-CATTTTTCTTTGTCGGGGCACCATCGCTGGAGCATGGTCGGA
691 -TTC-TTC--GT-CAGG-GC-ACCA----TC---G-C-CGG-AGCAT--C----GC-----CGGA
* * * *
5333126 GAACCTGACCGGCGGCATTGAGGTTTCGGCGATCGGGGGGGTCAGGGGGGTGTGCGCACATGATG
728 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATG
* * * *
5333191 TGCAATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACGTCGAGAACTC
792 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5333256 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTCCTGCCAG
857 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5333301 TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5333366 AGTTTTTAGATGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCAACTAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
5333430 GGCCAAAACTACTTCCGAAAAAATTTTAAAAAAT-CTCGAATCGTAAAAGGTTTCAAAAATCGTG
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATG
5333494 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5333559 ATTTACAAGCCATAAAAACGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * **
5333624 ACCTTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCATAC-CCCGCCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCC
* * * ** *
5333688 GCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATTGGACCAAA
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCAGA
* * * * * * * * *
5333753 CTGAGGGTTGCGGTAGCAAGATTGACAACACGTAGAAGGGCACCCGATCGATCCCCGGCTTGCGC
453 CTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* *
5333818 ATCGCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
518 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
5333883 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
583 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* *
5333948 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCG-
648 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGC
* * ** *
5334012 C----CA------GAGAACCTCACCGGCGGCCTTGGGGTTTTGACGATC-GGGGGCCCGGGGGGT
713 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* *
5334066 GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCA
778 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
5334131 AACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
843 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
5334190 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCA
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
5334255 AGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
5334320 GGCCAAAACCCCTTGT-GAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTG
131 GGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5334384 AAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5334449 ATTTACAAGCCATAAACAA-GGAATTGGCATGCAGAAATATGAAGATGTTCCAAAACCCACCTAC
260 ATTTACAAGCCATAAA-AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * *
5334513 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGTGTCGTGCCCGTCCACCCACC
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCC
* * *
5334578 CACCCGCTCGTTTCGTTGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAATCCAG
388 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA-CCAG
* * * * **
5334643 ACTGAGGGTTATGGTAGCAGGATCGGCAGAACGCAGAGGGGGACCCGATCGATCCCTGGCTTGTA
452 ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
** * * * * * *
5334708 TGTCCCGCCCTTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTAACTTCGGCATACGG
517 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * ** *
5334773 AGTTCATTCCTAGTCTAAGCATATGGCGTTCATTGCCAGTCTAAGATTGGACCAGACCGAGGGTC
582 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * *
5334838 ACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACAATCA
647 GCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCG
* * *
5334903 CCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTTCGAAGATCGGGGGGGCCGGGGGG
712 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * *
5334968 TGTGTGCACATGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
777 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * **
5335033 AAACCTCGAGAACTTAGACCCCCGCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
842 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5335093 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
5335158 AGTTTTTAGTTGAATTTTGTTT-TGCTTGGCAA-AGAAAATACAAGGATTATGTCTACCAAGTTT
66 AGTTTTTAGCTGAATTTT-TTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTT
* *
5335221 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAAT-CTCGGACCGCAAAAAGTTTCAAAAATCA
129 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCA
* * *
5335285 TGAAAAATAGAACACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAC
193 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
5335350 GAATTTACAAGACATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
258 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
5335415 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCGCCCGCC
323 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCC
* * **
5335477 CGCCCGCT-TTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATCAGACTGG
388 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAG
* ** * * *** * * * *
5335541 ACCGAGGGTTGCAGCGGTAGGATCCATAGTACGTAGAGGGGGACCCGA-CAGATCTCCGACTTGC
452 ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGC
* * * * *
5335605 GCATCCCGCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTACGTGTGTTGACACT-GGCATAC
516 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATAC
* * * * *
5335669 AGAGTTAATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGG
580 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * *
5335734 TTGCGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGTTAGGGCACCAT
645 TTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCAT
* * * *
5335799 CGTCGGAACATCGTCGGAGAACCTGACCGGCGGCATTGGGTTTCC-AGCGATC------G--GGG
710 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
* * * *
5335855 GGGTGTTCGAACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTC
774 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
5335920 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
839 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5335983 TAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5336048 AGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * **
5336113 GGCCAAAACACCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTGTGA
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
* * * * *
5336178 AAACTAGAAAATGAGTCATCTTG-CATGAAACTTCAAGTGAAGGCTTAACGGACCATTGTATGAA
196 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
5336242 TTTACAAGCCTTAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCA
261 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
5336307 CCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGGAGT-------GTCCGCCCGC
326 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGC
* * ** **
5336365 CCGCTCGTTTTGTCGGTTGGCTTCA-GCATAAGGAGTTCATTCCCAGTCTAAGATTGGATGAGAC
391 CCGCTCGTTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCAGAC
* * * * * * * *
5336429 TGAGGGTTATAGCAACAGGATCGGCAACACGCAAAGGGGGACCCGATCGATGCCCGACTTGTGCA
454 TGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * *
5336494 TCCCGCCCCTTTGGCCGGCTGAGCGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCAT-CAGAG
519 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
5336558 TTAATTCCTAG--T---C-TA---AG---A-T--C-G-----GATCAGACC--A---AGGGTTAC
584 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * ** * * *
5336597 AGTAGCACATGCTAGGCTCGAGCATGTGCTACTGCCGTACTTTTCTTCGTCGGGGCACCATCGCC
649 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCC
* * * * * **
5336662 AGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTCCCGGTGATC-GGGGGGCCGGGGGGGT
714 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGT
*
5336726 GTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
778 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
5336791 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAG
843 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5336850 TAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5336915 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *** * * *
5336980 GGACAAAAATCCACCCGAAAAAATTTTGAAAAATCCTGAAGCGCAAAAAGTTTCAAAAATCGTGA
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
* ** *
5337045 AAAATAAAAAACGAGTCGTCTTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAA
196 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5337110 TTTACAAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
261 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
5337175 CCCTATCGATCCACGACTTGCGCA-CCCGTCTCTCTGGCCGGCGTGGTG--C-CCGCCCGCCCGC
326 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGC
* * * *
5337236 CCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
391 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGACT
* * * * * ** *
5337301 AAGGGTTATGACAGCAAGATTGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
455 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * *
5337366 CCCGCCCCTCTGGCCGACTAAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
520 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
5337431 TCATTCCTAGTC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
585 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * ** *
5337495 GCAGCACATGCT-GGCTC-AGGGATGTGCTGGTGCCACATTTTTCTAGGTTAGGGCACCATCGCC
650 GCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCC
* ** *
5337558 GGAGCATC-CCTGGAGAACCTAACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGT
714 GGAGCATCGCC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGG-
* * *
5337622 GGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATTTTGGCCCCATATCCCTCA
775 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
5337687 TCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
840 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5337749 TAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
5337814 AGTTTTTAGCTGAATGTTTTTGTGCATG-TAAAAAAATATACAAGGATCACGTCCACCAAGTTAG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTG
* * * * *
5337878 GGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATG
130 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
5337943 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * * *
5338008 CCTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTGCC
260 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
5338073 ACCCTATCGATCCATGACGTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGTCCGCCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CCGCCC
* * * *
5338138 GCCCGCCAGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGAC
385 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AC
* * * * * * * *
5338203 CGGACAGAGGGTTGTGGCAGAAGGATCAGCAGCACGTAGAGGGGGACCCGACCCATTCCCGGCTT
449 CAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
5338268 GCACATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATA
514 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
5338333 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATC-GAATCGGACTGAG
579 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAG
* * * * *
5338397 GGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCAGGGCACC
643 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACC
* * * *
5338462 ATCGCCAGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACAATC-GAGGGGCCGG
708 ATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
5338526 GGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCACT
773 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5338591 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACGGGTTTGCTGCCAG
838 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5338655 TAGCCGTTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCT
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-
* * *
5338719 GGGTTTTTAGCTGAATTTTTTT-TGGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTT
65 GAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * **
5338783 GGGGCAAAAAATCCTTTCGAAAAAATTTTAAAAATTCCCGAACCTCAAAAAGTTTTGAAAATCAT
129 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* * *
5338848 GAAAAATAGAAAACGAGTCGTCTTGCCATTAAAGTTCTCGTGAAGGCTTAAGGGACCATTGTATG
194 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5338913 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
259 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5338978 CACCCTATCGATCAATGGCTTGCGCATCCTGTCTCTCTGGCCGGAGTAGTG--C-CCGCCCGCCC
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCC
* * * * *
5339040 GCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACAGAGTTCATTCACAGTCTAAGATTAGACCGGA
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGA
* * ** * * *
5339105 -TCGAGGGTTGCGGCAAG-AGGATCGACAGCACGTGGAGGGGGACCCGACCGATCCCCGACTTGT
453 CT-GAGGGTTGTGGC-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * *
5339168 GCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACA
516 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * ** *
5339233 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGT
581 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * * *
5339298 TACGGTAGCACATGCTAGGCTC-AGACATTTGCTGGTGCCACTTTTTTCTTCGCCGGGGCACCAT
646 TGCGGCAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCAT
* * * * * * * * *
5339362 TGCAGGAGCATCACCGGAGATCCTGACCGGGGGCATTAGGGTTTCGACGAGT-GAGGGGGTCGGG
710 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCG-GGGGGGC-CG
* *
5339426 GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCGATCCC
772 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** * * *
5339491 TTGTCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
837 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5339556 TAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5339621 AGTTTTTAGCTGAATGTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
5339686 GGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAA
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
* * *
5339751 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATTAA
196 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
5339816 TTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGGCTAAACCCACCTACCA
261 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
5339881 CCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCTCCCGCCCG
326 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCG
** * * * *
5339946 CTAGCTCATTTCGACGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAAACC-GAA
390 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAG-A
* * ** ** * * * * *
5340010 CCGAGTGTTACGATAGCAGGATCAGTAGCACGCAGAGGGGGACACGATCGATCCTCAGCTTGCGC
453 CTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
*
5340075 ATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----TA---A
518 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
5340126 ---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
583 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * *
5340179 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACTGGGGCACCATCA
648 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-AGGGCACCATCG
* *
5340243 CCGAAGCATCGCCGGAGAACCAGACCGGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGGGGG
712 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGG
*
5340307 GTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
776 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
5340372 CAAACCTCAAGAACTCACACCCCATTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAG
841 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5340433 TGGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5340498 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** * ** *
5340563 GGACAAAACTCC-TTCTGAAAGAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTG
131 GGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5340627 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTACGGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5340692 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
5340757 ACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCTCGCCCGCCTGCCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCC
* * * *
5340822 GCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAACATCAGAACAGA
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGA
* * * * * ***
5340887 -TCGAGGGTTGCGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTTACTTGCG
453 CT-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* *
5340951 CATCCCAG-CCCTCTGGCTGGCTGAGCGCCCGCATGCAT-GTTTCGTGGGTTGACTTAGGCATAC
517 CATCCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
5341014 GGAGTTCATTCCCAGTCCAAGCAAATGGAGTTCATTCCCAGTCTAATATCAGACTAGACCGAAGG
580 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
** * *
5341079 TTATGGCAGCACATACTGGGCTCTG-GCATGTGCTGGTGCCGTATTTTTC-T--TC---G-----
645 TTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA
* * * *
5341132 T---CGGAGCATCGCCGGAGAACCTGACGGGCGGTATTGAGGTTCCGACGATCGGGGGGGCTGGG
709 TCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
5341194 GGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTC
774 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5341259 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTACCAG
839 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
5341322 TAGCCATTAAAGTG-CTGGAATGGAGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTTTG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
5341386 AGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * ** * *
5341451 GGCCAAAAC-ACTTTTGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTTGAATATCGTG
131 GGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* *
5341515 AAAAATAGAAAACGAGTCATCTTGTCATGAGAA----A--T--A-G---AA---A--A-TG-A-G
195 AAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * ** * * *
5341560 -GTGT-CTTGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTAA
259 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
5341623 CACCCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGGCAGACGTAGTGCTCGCTCGCCCACC
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCC
* * ** * * *
5341688 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGATCGGATCGG
388 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAG
* * * * * * *
5341753 ACCGAGGGTTGTGACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTGCA
452 ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * ** * *
5341818 CATCCTGCCCCTCTGGACGACTGAGCGCCCGCACGCTCGTTTTATGTGTTGACTTAGGCATACGA
517 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
5341883 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTT
582 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * *
5341948 GTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCG
647 GCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCG
* * ** * * *
5342013 TCGAAGCATCATCGGAGAACCTGACTGGCGGTATTGGGGTTCCGACAATC-GGGGGGCCGGGGGG
712 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG
*
5342077 GATGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
776 G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
5342142 TCAAACCTCGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
840 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
5342204 TAGCCGTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCA
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5342269 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
5342334 GGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCAT
131 GGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCAT
* * *
5342397 GAAAAATAGAAAACGAGTCGACTTGCCATGAAACTTAACGTGCAGGCTTAAGGGACCATTGTATG
194 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5342462 AATTCACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
259 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** * *
5342527 CACCCTATCGGTCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTAGCCCGCCCTCT
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCC
* * * ** *
5342592 CGCCCGCTCGTTTCGTCGATTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGGTTGGACCCG
388 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCAACCAG
* * ** *
5342657 ACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCG
452 ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * ** ** * *
5342722 CATCCTGCCCCTC-AGTCGACTGAGCGCAAGCACGCTCGTTTCAAGGGTTGACTCAGGCATACAG
517 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
5342786 AGTTCATTCCCAGTCCAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
582 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * **
5342851 GCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCCCATTTTTCTTCATTGGGGCACCATCG
647 GCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCG
* * * *
5342916 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCTGTGGGG
712 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGG
* * *
5342981 GTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAG
776 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
5343046 CAAACCTCGAGAACTCACACCCTCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAG
841 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5343107 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
5343172 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGATTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
5343237 GGTCAAAACTCCTTTTGAAAAAATTTTAAGAAAT-CTCGAACCGTAAAAAGGTTT-GAAAATCGT
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAA-GTTTCAAAAATCAT
*
5343300 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
194 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * **
5343365 AATTGACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
259 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5343430 CACCCTATTGATCCACGGCTTGCGCATCCGGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCC
* * *
5343495 CGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGG
388 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAG
* * * * * * * *
5343559 ACTGAGAGTTGTAGCAGCAAGATCGGTAGCACGTAGAGGGGGACCCGGTCAATCCCCGGGTTGCG
452 ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * *
5343624 TATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
517 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
5343689 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATAC-AGGGT
582 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGT
* * * * *
5343753 TGCGGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTC-ACCGAGGCATCAT
646 TGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAG-GGCACCAT
* * * * *
5343817 CGTCGGAGCATCGTCGGAGAACCTTACCGACGGCATTGGGGATCCGACGATCGGGGGGGCC--GG
710 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * *
5343880 GCTGTGTGCACAAGATGTGCGATGGGTGCTGGTACTTGG-CC------T-----CCTATCCCTCA
775 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
5343933 TCAAACCTTGAGAACTTACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
840 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5343995 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCG
1 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
5344060 AGTTTTTAGATGAGTGTTTTTGTGCATGCCAACAAAAATACAGGGATCAGGTCTACCAAGTTTGG
66 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
5344125 GGCCAAAACTCCTTCCAAAAAAATTTAAAAAAAT-CTCGAACTGCAAAAAGTTTAAAAAATCGTA
131 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATG
*
5344189 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5344254 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTACCCAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * ** * *
5344319 ACCCTATCAATCCACGGCTTACGCGTCCCGTCTCTCTGGCCGATGCAGTGCCCGCCTGCCCGGCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCC
* * * *
5344384 GCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGG
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCA-G
* * ** * * * *
5344448 AC-CACAGGTTGCAGTA-CTAGGATCGACAGCACGTAGAGGGGGACCC-AGTCGATCCCCGACTT
452 ACTGA-GGGTTGTGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTT
* * * * * * * * * **
5344510 GCGCATCGCACTCCTCTTGTCGGCTGAGCGCCCGGACGTTCATTTTC-TGAGTTGACCGAGGCAT
514 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCAT
* * *
5344574 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
578 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
5344639 GGTTG-GGACAGCACATGCT
643 GGTTGCGG-CAGCACATGCT
5344658 AGTACTTGGC
Statistics
Matches: 11437, Mismatches: 1437, Indels: 683
0.84 0.11 0.05
Matches are distributed among these distances:
859 99 0.01
862 1 0.00
864 8 0.00
866 4 0.00
867 700 0.06
868 122 0.01
869 2 0.00
870 6 0.00
871 166 0.01
872 16 0.00
873 2 0.00
874 1 0.00
876 6 0.00
877 620 0.05
878 14 0.00
879 135 0.01
880 15 0.00
881 50 0.00
882 132 0.01
883 183 0.02
884 5 0.00
885 30 0.00
886 145 0.01
887 14 0.00
888 647 0.06
889 721 0.06
890 567 0.05
891 324 0.03
892 12 0.00
893 32 0.00
894 50 0.00
895 7 0.00
896 85 0.01
897 469 0.04
898 779 0.07
899 466 0.04
900 78 0.01
901 488 0.04
902 144 0.01
903 1451 0.13
904 269 0.02
905 194 0.02
906 473 0.04
907 28 0.00
908 203 0.02
909 76 0.01
910 93 0.01
911 6 0.00
912 1 0.00
913 17 0.00
914 3 0.00
915 6 0.00
916 20 0.00
917 22 0.00
918 3 0.00
919 6 0.00
920 231 0.02
921 194 0.02
922 2 0.00
923 6 0.00
924 8 0.00
925 3 0.00
927 1 0.00
928 4 0.00
931 2 0.00
932 4 0.00
933 2 0.00
934 5 0.00
935 1 0.00
936 1 0.00
937 7 0.00
938 1 0.00
939 3 0.00
940 3 0.00
941 1 0.00
942 9 0.00
943 2 0.00
944 2 0.00
945 291 0.03
946 209 0.02
947 1 0.00
948 46 0.00
949 181 0.02
950 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCAGACTG
AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGG
AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
Found at i:5335692 original size:26 final size:26
Alignment explanation
Indices: 5335663--5335715 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5335653 GTTGACACTG
*
5335663 GCATACAGAGTTAATTGCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
* *
5335689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
5335715 G
1 G
5335716 ATCGGAGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:5337205 original size:867 final size:870
Alignment explanation
Indices: 5327071--5344599 Score: 16716
Period size: 903 Copynumber: 19.6 Consensus size: 870
5327061 CATCGCCAGA
* * *
5327071 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
5327136 CAAAACTCCTTTCGAAAAAATTTTAACAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTG-AAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
5327200 A-A-AAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * ** *
5327263 ACAAGCCGTAAAAATGGCATTGGCATGTAGAAATATGAAGAACTGCCTAAACCCACTTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
5327328 TATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGAAGTGCCTGTCCGCCCGCCCGCT
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-C---CCGCCCG--C-C-
* * * **
5327392 CGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCA
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTG
* * * ** * ** *
5327457 AGGGTTGCGGCAGTAGGATCGGTAGCTTGCAGAAGGGGA-CCGGCCGATCCCCGGCTTGCGCATC
382 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATC
** * * * ** *
5327521 CCGCCCCTCTGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTTAATTTAACCATACGGAGTT
446 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * * * * * * *
5327586 CATTCCCAGTCTAAG-ATC-AGA-CCGAACCGAGGGTTACGGTAGCACAAGCTTGGCTAGGGCAT
511 CATTCCCAGTCTAAGCATCGAGATCAG-ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* ** * * * *
5327648 GTGCTGGTGCTGCATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCGTCGGAGAACATGACCG
575 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* * * * * *
5327713 ACGACATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCACACATGATGTGTGAAGGG
640 GCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCGATGGG
*
5327778 TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
702 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
5327843 TAAAGAGCATTCGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGGGACA
767 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
5327908 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGT
832 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5327947 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
5328012 CAAAACTCCTTCCGAAAAAAGTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCGACAATCGTGAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * * *
5328076 AATAAAAAACAAGTCGTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5328141 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
5328206 CTATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATTCCCGCTCGTCCGCTCGCT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCT
* *
5328271 CATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-GAAC-GAG
321 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAG-ACTGAG
* ** * * * * * *
5328334 GGTTGCGATAGCATGATTGGTAGCACGAAAAGGGGGACCCGA-CTGATCCTCGACTTACGCATCC
384 GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCC-CGACTTGCGCATCC
* * * * * * * **
5328398 CACCCGTCTGGCCGACTGAGCGCCCGGACGTTC-TTTCATGGGTTGACTTAGGCAAATGGAGTTC
447 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* *
5328462 ACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGGCCGAGGGTTGCGGC
512 ATTCCCAGTCTAAGCAT-C-GAG---------A-TC----A---GA-----CCAAGGGTTGCGGC
* * * * * * *
5328527 AGCACATGCTGGGCTTGGGCATGTGCTGGTACCACATTTTTCTTCGTCGAGGCACCGTCGTCGGA
553 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* ** * *
5328592 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGTGGGGCCAGGGGGGTGTG
618 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTG
* *
5328657 CACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
682 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
5328722 CTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTACCAGTAGCCGTTA
747 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
5328787 AAGTGTCTGAAATGAGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
812 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
5328846 TTTTAGCTGAAATTTTTTTATGCCTGCCAACAAAAATACAAGGATCAGGTCTAATC-AGTTTGGG
1 TTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGG
* * * * *
5328910 GCCAAAACGCCTTCCGAAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA--ATGAA
64 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
5328973 AAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
5329038 TTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGCGCCTAAACCAACCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
5329103 CCTATCGATCCACGGCTTACGCATCCCTGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCACTCG
259 CCTATCGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG
* * * * *
5329168 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCAGACGGAGGCTT
323 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGAGGGTT
** * * * * *
5329233 ACGGCAGCATGATCGGCAGCAGGCAGAGGGGGAACCCG-CCGATCCGTGACTTGCGCATCCTGCC
388 GTGGCAGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGATCGATCC-CGACTTGCGCATCCCGCC
* * *
5329297 CCTCTGGCCGGCTGACCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATTC
451 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
*
5329362 CCAGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTACGGCAGCA
516 CCAG--T---C-TA---A---G-----CA-TC---GA---GATCAGACCAAGGGTTGCGGCAGCA
* * * * * * * *
5329427 CATGCGGGGATTGGGCATGTGCTGGTACTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
557 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * * * * *
5329492 CACCGAAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGTCAGGGGGGGTGTTCGC
622 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGGTGTGCGC
* *
5329557 CCATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
685 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
5329622 GAGAACTCACACCCCCTTGAAGGGCATTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
750 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
5329687 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
815 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5329743 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
5329808 CAAAACTCCTTCCGAAAAAAGTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCGACAATTGTGAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * * *
5329872 AATAAAAAACAAGTCGTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5329937 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
5330002 CTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCATAGTGCCCACCAGTCCGCCCACT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCT
* * * * ** ** *
5330067 CGTTTTGTCGGTTGGCTAAGGCATACGAAGTTCATTCCAAGTCTAAGATTGGACTTGACCGAGGG
321 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGAGGG
** * ** * * * * *
5330132 TTACGGCAACAGGATCAACAGCACGCATAGTGGGACCCGACCGATCCCCGACTTACTCATCCCGC
386 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATCCCGC
* * * * * *
5330197 CCCTCTTGTCGGTTGAGCGCTCGGACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
450 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
*
5330262 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTGGCGGCAGC
515 CCCAG--T---C-T---AAG--CA-T--C-G----AGATCAGACC--A---AGGGTTGCGGCAGC
* * **
5330327 ACATGCTGGGCTC-AGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGC
556 ACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * * * ** *
5330391 ATCGTCGAAGAACCTGATCGGCCGCATTTGGGTTCCAACGATCGGGGGGGCC-GGAGGGTGTGCG
620 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCG
* * *
5330455 CACATGATGTGCGGTGGGTGCTTGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
684 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
5330520 CGAGAACCCACA-CCCC--------C----------TT--A--------GCC----G---TTAAA
749 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
5330549 GTGTCTGAAATGGGGACACATTTTTCAAATGATCATAAAATCTTGTACACTTCGAGT
814 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5330606 TTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** **
5330671 CAAAACTCCTT-GGAAAAAAATTTTAAAATATCTTGAACCGC-AAAAGTTTTGAAAATAATGAAA
66 CAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
5330734 AATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5330799 TACAGGCCATAAAAATGGCATTGGCAAGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
5330864 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCCCACCCGCC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG----CCCGCC
* * * *
5330929 CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGA-TC
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACT-
* * * * * * *
5330993 GAGGGTTGTGGCAGTAAGATCGGTAG-ACGTAGAGGGGGA-CC-TTCTGATCCCCGGCTTGTTGC
381 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GAT-CCCGACTTG-CGC
* * * * * * *
5331055 AT-CCGCCTCTCGGCGCCGGGTGTAAGCGGCCCGTACGCTCATTTCGTGGTTGGTGATTTTAGGC
443 ATCCCGCCCCTCTG-GCCGGCTG--AGC-GCCCGCACGCTCGTTTCGTGG--GTTGA-CTTAGG-
**
5331119 CATATGGAGTTCATTTCCCAGTCTAAGGCATTACGGAGGTTCATTCCAGCTTAAGATTAGCCGGA
500 CATACAGAGTTCA-TTCCCAGTCTAA-GCA-T-C-GA-G---A-T----C---AG---A-CC--A
* * * * * **
5331184 CCGAGGGTTGCGTTCAGCACATGCATGGGCACAAGCATGTCCTGGTACCGCATTTTTCCTTCACC
542 ---AGGGTTGCG-GCAGCACATGC-TGGGCTCGAGCATGTGCTGGTGCCGCATTTTT-CTTCGTC
* * *
5331249 GGGGCACCCCATCGTCGGAGCATCACCGGATGAACCTGACCGG-AGCATTTGGGGTTCCGGCGAT
601 GGGGCA--CCATCGCCGGAGCATCGCCGGA-GAACCTGACCGGCGGCA-TTGGGGTTCCGGCGAT
** *
5331313 CGCGGGGGGCCGGGGGAATGTGCGCCACATTGATGGGCGATGGGTGCTGGTACTTGGCCCTTATA
662 --CGGGGGGCCGGGGGGGTGTGCG-CACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * **
5331378 TTGGCCCCCTATCCCTCATCAAATCTCGAGAACTTACACCCTTTTAAAGAGCATTTGAGATTTTA
723 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
5331443 CAAGTTTGCTGCCAGTAG-CATTTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAA
788 CAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
5331507 AATCTCGTACACTAT-GAGT
852 AATCTTGTACACT-TCGAGT
* * *
5331526 TTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
5331591 CAAAACAT-CTTCCGAAAAAATTTTAAAAAATCAC-GAACCGCAAAAAGTTTCCAAAATCATGAA
66 CAAAAC-TCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
5331654 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5331719 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
5331784 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCC
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG---CCCGCC
* * * * * *
5331849 CGCTCGTTTCATCAGTTGGCGTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCG
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTG
* * * * * *
5331914 AGGGTTGTGGCAGCA--A---GCAGCACCCAGTGGGAGACCCCATCGATCCCCAGCTTGCGCGTC
382 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGA-CTTGCGCATC
* ** * * *
5331974 CCACCCCTCTGGCTTGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
446 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * *
5332039 CATTCCTAGTCTGAGCATACGGAGTTCATTGCCAGTTTAAGATCAGATGGGACAGAGGGTTGCGA
511 CATTCCCAG--T---C-TA---AG--CA-T--C-G----AGATCAGA----CCA-AGGGTTGCGG
* * * * * *
5332104 CAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCACCGG
552 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * **
5332169 AGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGT
617 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGT
* * *
5332233 GCGCAAATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
681 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
5332298 CCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAACAATT
746 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* ** **
5332363 AAAGTGTCTGAAATGGGGATACTTTTTTCAAATCATTTCAAAATCTTGTACACTTCGAGT
811 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5332423 TTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* **
5332488 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
5332553 ATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
5332618 ACAAGCCA-AACAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
196 ACAAGCCATAA-AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** * * *
5332682 CTATCGATCCATGACTTGCGCATCCCGTCTCTCTCACTGATGTAGTGCCCGCCTTCCCGCCCGTT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCT
** * *
5332747 CGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATT-CTAGTCTAAGATC-GAACCAGACTGAGG
321 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACGAGACTGAGG
* * * * * * *
5332810 GTTGCGACAGCTGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCTG-CTTGCGCATCCT
385 GTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCC-GACTTGCGCATCCC
* * * * *
5332874 GCCCCTCGGGTCGGCTGAGCGCCCACACGCTCGTTTCATAGGG-TGACTTAGGCATGCAGAGTTC
448 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACAGAGTTC
* ** * ** * * *
5332938 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCA--GTCTAAGATCAGCCCA-GATCGAGGGTTCA
512 ATTCCCAGTCTAAGCAT-C-GAGATCAGACCAAGGGT-TGCG-GCAGCACATG--C-TGGG--C-
* * * * * * * * * *
5333000 TTCCCAG-ATCG-GCCCAGTCTAAGCATACGGAGTTCATTC-CCAGTTGCGACAGCACATGTTGG
567 -T-CGAGCAT-GTG--CTG-GT--GC---CGCA-TT-TTTCTTC-GTCGGGGCA-C-CA---T-C
* * * ****** * ** ** * *
5333062 GCTC-GAGCATGTGCTGGTG---CT-ACATTTTTCTTTGTCGGGGCACCATCGCT-GGAGCATGG
612 GC-CGGAGCAT-CGCCGGAGAACCTGACCGGCGGC-AT-T-GGGGTTCCGGCGATCGG-G--GGG
* **** ** * * * * **** * **
5333121 TCGGAGAACCTGACCGGCGGCATTGAGGTTTCGGCGATCGGGGGGGTCAGGGGGGTGTGCGCACA
669 CCGG-GGGGGTGTGC-GC-ACA-TGA--TGT--GCGAT---GGGTG-CTGGTACTTG-GCCCTTA
*** * * * * * * * * * *
5333186 TGATGTGCAATGCGTGCTGGTACTTGGCCCTTATA--TTG-G--CCCCCTA-TCCCTTATCAA-A
721 T-AT-TG----GCCCCCT-ATCCCT---CATCAAACCTCGAGAACTCAC-ACCCCCTTA--AAGA
* * ** * *** *** * * *** * * ** ** *
5333244 -C-GTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTCCTGCCA-GTAGCC
773 GCATTTGAGATTTTACA--GGTTTGCTG-CCA--GTAGCCATTA-AAGTGT-CTGAAATGGGGAC
* * * * * *
5333306 A-TTAAAGTGTCTGAA--AT-AGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGA
831 ACTT---TTTTC-AAATGGTCA--CA-AA---------A---T--------CTTGTACACTTCGA
5333367 GT
869 GT
* * *
5333369 TTTTAGATGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCAACTAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
5333433 CAAAACTACTTCCGAAAAAATTTTAAAAAAT-CTCGAATCGTAAAAGGTTTCAAAAATCGTGAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAA
5333497 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5333562 TACAAGCCATAAAAACGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
5333627 TTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCATACCCCGCCCGCCC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-------CCCGCCCGCCC
* * * ** * *
5333692 GCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATTGGACCAAACTGA
318 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGA
* * * * * * * * * * *
5333757 GGGTTGCGGTAGCAAGATTGACAACACGTAGAAGGGCACCCGATCGATCCCCGGCTTGCGCATCG
383 GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATCC
* *
5333822 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
447 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
5333887 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
512 ATTCCCAGTCTAAGCAT-C-GAG---------A-TC----A---GACC--A---AGGGTTGCGGC
*
5333952 AGCACATGCTGGGCTCGAGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCG-C---
553 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * ** * * *
5334013 -CA------GAGAACCTCACCGGCGGCCTTGGGGTTTTGACGATC-GGGGGCCCGGGGGGTGTGT
618 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGC
*
5334070 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACC
683 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
5334135 TTGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
748 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
5334200 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCAAGT
813 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
5334258 TTTTAGCTGAATTTTTTTATGCAAGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * *
5334323 CAAAACCCCTTGTGAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5334388 ATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
5334453 ACAAGCCATAAACAA-GGAATTGGCATGCAGAAATATGAAGATGTTCCAAAACCCACCTACCACC
196 ACAAGCCATAAA-AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * *
5334517 CTATTGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGTGTCGTGCCCGTCCACCCACCCACC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--------CCCGCC
* * *
5334582 CGCTCGTTTCGTTGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCA-ATCCAGACT
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGACT
* * * * ****
5334646 GAGGGTTATGGTAGCAGGATCGGCAGAACGCAGAGGGGGACCCGATCGATCCCTGGCTTGTATGT
381 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-GACTTGCGCAT
* * * * * * *
5334711 CCCGCCCTTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTAACTTCGGCATACGGAGT
445 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* **
5334776 TCATTCCTAGTCTAAGCATATGGCGTTCATTGCCAGTCTAAGATTGGACCAGACCGAGGGTCACG
510 TCATTCCCAGTCTAAGC--AT--CG---A--G--A-TC----A---GACC--A---AGGGTTGCG
* * *
5334841 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACAATCACCG
551 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * **
5334906 GAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTTCGAAGATCGGGGGGGCC-GGGGGGTG
616 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTG
* * *
5334970 TGTGCACATGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
680 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * **
5335035 ACCTCGAGAACTTAGACCCCCGCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
745 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5335100 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGT
810 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5335161 TTTTAGTTGAATTTTGTTT-TGCTTGGCAA-AGAAAATACAAGGATTATGTCTACCAAGTTTGGG
1 TTTTAGCTGAATTTT-TTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5335224 GCCAAAAATCCTTTCGAAAAAATTTTAAAAAAT-CTCGGACCGCAAAAAGTTTCAAAAATCATGA
64 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGA
* * *
5335288 AAAATAGAACACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAA
128 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5335353 TTTACAAGACATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
193 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
5335418 CCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
258 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG
* *
5335483 CTTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATCAGACTG-GACCGAG
323 ---TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAGACTGAG
** * * *** * *
5335547 GGTTGCAGCGGTAGGATCCATAGTACGTAGAGGGGGACCCGA-CAGATCTCCGACTTGCGCATCC
384 GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATC-CCGACTTGCGCATCC
* * * * *
5335611 CGCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTACGTGTGTTGACACT-GGCATACAGAGTT
447 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACAGAGTT
* *
5335675 AATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGG
511 CATTCCCAGTCTAAGCAT-C-GAG---------A-TC--AGA-C----C--A---AGGGTTGCGG
* * ** *
5335740 CAGCACATGCTGGGCTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCGTCGG
552 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * *
5335805 AACATCGTCGGAGAACCTGACCGGCGGCATTGGGTTTCCAGCGAT--------CGGGGGGGTGTT
617 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTG
* * *
5335862 CGAACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAAC
682 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
5335927 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCTATTA
747 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
5335992 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
812 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5336051 TTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * * *
5336116 CAAAACACCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTGTGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * * *
5336181 CTAGAAAATGAGTCATCTTG-CATGAAACTTCAAGTGAAGGCTTAACGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5336245 ACAAGCCTTAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
5336310 TATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGGAGTGTCCGCCCGCCCGCTCGTTT
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTT
* * ** * *
5336375 TGTCGGTTGGCTTCA-GCATAAGGAGTTCATTCCCAGTCTAAGATTGGATGAGACTGAGGGTTAT
326 CGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGAGGGTTGT
* * * * *
5336439 AGCAACAGGATCGGCAACACGCAAAGGGGGACCCGATCGATGCCCGACTTGTGCATCCCGCCCCT
390 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATCCCGCCCCT
* * * * *
5336504 TTGGCCGGCTGAGCGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCAT-CAGAGTTAATTCCTA
454 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
* * * * **
5336568 GTCTAAG-ATCG-GATCAGACCAAGGGTTACAGTAGCACATGCTAGGCTCGAGCATGTGCTACTG
519 GTCTAAGCATCGAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
* * * * *
5336631 CCGTACTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTG
584 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
5336696 AGGTCCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTG
649 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
5336761 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
714 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
5336826 GAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
779 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
5336891 GGTCACAAAATCTTGTACACTTCGAGT
844 GGTCACAAAATCTTGTACACTTCGAGT
* *
5336918 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGA
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * *
5336983 CAAAAATCCACCCGAAAAAATTTTGAAAAATCCTGAAGCGCAAAAAGTTTCAAAAATCGTGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* ** *
5337048 ATAAAAAACGAGTCGTCTTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
5337113 ACAAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
5337178 TATCGATCCACGACTTGCGCA-CCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCCACTC
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG----CTC
* * * **
5337242 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGT
322 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGAGGGT
* * * * ** * *
5337307 TATGACAGCAAGATTGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
387 TGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATCCCGCC
* * * * *
5337372 CCTCTGGCCGACTAAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
451 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* *
5337437 CTAGTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAC
516 CCAGT----C-TA---AG--CA-T--C-G----AGATCAGACC--A---AGGGTTGCGGCAGCAC
* * ** **
5337502 ATGCT-GGCTC-AGGGATGTGCTGGTGCCACATTTTTCTAGGTTAGGGCACCATCGCCGGAGCAT
558 ATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* **
5337565 C-CCTGGAGAACCTAACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGGTGTGC
622 CGCC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGG-GGTGTGC
* * *
5337629 GCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATTTTGGCCCCATATCCCTCATCAAACC
683 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
5337694 TCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
748 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
5337759 AGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
813 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5337817 TTTTAGCTGAATGTTTTTGTGCATG-TAAAAAAATATACAAGGATCACGTCCACCAAGTTAGGGG
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
5337881 CCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATGAAA
65 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
**
5337946 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGACCT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5338011 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTGCCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
5338076 CTATCGATCCATGACGTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G--C--CCGCCCG--
* * *
5338141 CGCCAGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCG-
315 C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGA
* * * * * * *
5338205 GACAGAGGGTTGTGGCAGAAGGATCAGCAGCACGTAGAGGGGGACCCGACCCATTCCCGGCTTGC
377 GACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGA-TCCCGACTTGC
* * * * *
5338270 ACATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACG
441 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
5338335 GAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGAATCGGACTGAGGGT
506 GAGTTCATTCCCAGTCTAAGCAT-C-GAG---------A-TC--AGA-C----C--A---AGGGT
* * * * * *
5338400 TGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCAGGGCACCATC
547 TGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
5338465 GCCAGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGAGGGGCC-GGGGG
612 GCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
* * *
5338529 GTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCACTCAT
677 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
5338594 CAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACGGGTTTGCTGCCAGTAGC
742 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
5338659 CGTTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGGGT
807 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGT
* *
5338723 TTTTAGCTGAATTTTTTT-TGGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGG
1 TTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * * ** *
5338787 CAAAAAATCCTTTCGAAAAAATTTTAAAAATTCCCGAACCTCAAAAAGTTTTGAAAATCATGAAA
65 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
5338852 AATAGAAAACGAGTCGTCTTGCCATTAAAGTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
5338917 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
5338982 CTATCGATCAATGGCTTGCGCATCCTGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCGC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGT----GCCCGCCCGCCCGC
* * * *
5339046 TCGTTTGGTCGGTTGGCTTAGGCATACAGAGTTCATTCACAGTCTAAGATTAGACCG-GA-TCGA
320 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGACT-GA
* * ** * *
5339109 GGGTTGCGGCAAG-AGGATCGACAGCACGTGGAGGGGGACCCGACCGATCCCCGACTTGTGCATC
383 GGGTTGTGGC-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATC
* * *
5339173 CCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTT
446 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*
5339238 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTACGG
511 CATTCCCAGTCTAAGCAT-C-GAG---------A-TC--AGA-C----C--A---AGGGTTGCGG
* * * * * * * *
5339303 TAGCACATGCTAGGCTC-AGACATTTGCTGGTGCCACTTTTTTCTTCGCCGGGGCACCATTGCAG
552 CAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * * * * *
5339367 GAGCATCACCGGAGATCCTGACCGGGGGCATTAGGGTTTCGACGAGT-GAGGGGGTCGGGGGGGG
616 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCG-GGGGG-CCGGGGGGG
* * **
5339431 TGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCGATCCCTTGTC
678 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
5339496 AAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
743 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5339561 ATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
808 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5339624 TTTTAGCTGAATGTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
5339689 CAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5339754 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATTAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5339819 ACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGGCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * **
5339884 TATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCTCCCGCCCGCTA
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCG-CC-C--
* * * * * *
5339949 GCTCATTTCGACGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCGA-ACCG
318 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGACTG
* ** ** * * *
5340013 AGTGTTACGATAGCAGGATCAGTAGCACGCAGAGGGGGACACGATCGATCCTC-AGCTTGCGCAT
382 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-CGA-CTTGCGCAT
* * *
5340077 CCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGT
445 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* * *
5340142 TCATTCCCAGTCTAAG-ATCG-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
510 TCATTCCCAGTCTAAGCATCGAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * * * *
5340205 GTGCTGGTGCCACATTTTTCTTC-ACTGGGGCACCATCACCGAAGCATCGCCGGAGAACCAGACC
575 GTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* *
5340269 GGCGGCATTGGGGTTCCGGAGATCGGGGGGGCC-GGGGGGTGTGAGCACATGATGTGCGATGGGT
639 GGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
5340333 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATT
703 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
5340398 AAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTGGCCGTTAAAGTGTCTGAAATGGGGACAC
768 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
5340463 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
833 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5340501 TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** * **
5340566 CAAAACTCCTTCTGAAAGAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5340631 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTACGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
5340696 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT
196 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
5340761 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCTCGCCCGCCTGCCCGCCC
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G-T-G--C-CC-GCCCGCCC
* * *
5340826 GTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAACATCAGAAC-AGA-TC
318 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACGAGACT-
* * * * * *
5340889 GAGGGTTGCGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTTACTTGCGCAT
381 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-GACTTGCGCAT
* * *
5340954 CCCAG-CCCTCTGGCTGGCTGAGCGCCCGCATGCAT-GTTTCGTGGGTTGACTTAGGCATACGGA
445 CCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACAGA
* * *
5341017 GTTCATTCCCAGTCCAAGCAAATGGAGTTCATTCCCAGTCTAATATCAGACTAGACCGAAGGTTA
508 GTTCATTCCCAGTCTAAGC--ATCGAG---A-T--CAG------A-C---C-A-A--G--GGTTG
* * *
5341082 TGGCAGCACATACTGGGCTCTG-GCATGTGCTGGTGCCGTATTTTTC-T--TC---G-----T--
549 CGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * *
5341133 -CGGAGCATCGCCGGAGAACCTGACGGGCGGTATTGAGGTTCCGACGATCGGGGGGGCTGGGGGG
613 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGG
* * *
5341197 TGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATC
678 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
5341262 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTACCAGTAGCC
743 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
5341327 ATTAAAGTG-CTGGAATGGAGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGT
808 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5341389 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * * ** *
5341454 CAAAAC-ACTTTTGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTTGAATATCGTGAAA
66 CAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
5341518 AATAGAAAACGAGTCATCTTGTCATGAGAA----A--T--A-G---AA---A--A-TG-A-G-GT
130 AATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* ** * * *
5341562 GT-CTTGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTAACAC
194 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
5341626 CCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGGCAGACGTAGTGCTCGCTCGCCCACCCGC
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CG----CCCGC
* * ** *
5341691 CCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGATCGGATCG-GAC
316 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGAC
* * * * *
5341755 CGAGGGTTGTGACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTGCACA
380 TGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-CGACTTGCGCA
* * * ** *
5341820 TCCTGCCCCTCTGGACGACTGAGCGCCCGCACGCTCGTTTTATGTGTTGACTTAGGCATAC-GAA
444 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-A
5341884 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTG
508 GTTCATTCCCAG--T---C-TA---AG--CA-T-C--G----AGATC--A---GACCAAGGGTTG
* * * * * *
5341949 TGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGT
549 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* ** * * * *
5342014 CGAAGCATCATCGGAGAACCTGACTGGCGGTATTGGGGTTCCGACAATCGGGGGGCCGGGGGGGA
614 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGG-
*
5342079 TGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
678 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5342144 AAACCTCGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
743 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
5342209 GTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCAAGT
808 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5342272 TTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
5342337 CAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
5342401 AATAGAAAACGAGTCGACTTGCCATGAAACTTAACGTGCAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5342466 CACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
5342531 CTATCGGTCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTAGCCCGCCCTCTCGCC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCG--C-C-CGCC
* * * ** ** *
5342596 CGCTCGTTTCGTCGATTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGGTTGGACCCGACCG
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTG
* ** *
5342661 AGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATC
382 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGA-CTTGCGCATC
* * * * ** ** *
5342726 CTGCCCCTC-AGTCGACTGAGCGCAAGCACGCTCGTTTCAAGGGTTGACTCAGGCATACAGAGTT
446 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*
5342790 CATTCCCAGTCCAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
511 CATTCCCAGT-C-----TA---AG--CA-T--C-G----AGAT-----CAGACCAAGGGTTGCGG
* * * * * * *
5342855 TAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCCCATTTTTCTTCATTGGGGCACCATCGTCGG
552 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
5342920 AGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCTGTGGGGGTGT
617 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGT
* * *
5342985 GCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAA
681 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
5343050 CCTCGAGAACTCACACCCTCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
746 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5343115 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGT
811 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5343175 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGATTGGGGT
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** * * *
5343240 CAAAACTCCTTTTGAAAAAATTTTAAGAAAT-CTCGAACCGTAAAAAGGTTT-GAAAATCGTGAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAA-GTTTCAAAAATCGTGAA
*
5343303 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * **
5343368 TGACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
5343433 CCTATTGATCCACGGCTTGCGCATCCGGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGC
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT---
*
5343498 CCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCG-GAC
321 -CG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGAC
* * * * * * * ** *
5343561 TGAGAGTTGTAGCAGCAAGATCGGTAGCACGTAGAGGGGGACCCGGTCAATCCCCGGGTTGCGTA
380 TGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCA
*
5343626 TCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
444 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
5343691 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATACAGGGTTGC
509 TTCATTCCCAGTCTAAGCAT-C-GAG---------A-TC--AGA-C----C----A-AGGGTTGC
* * ** * * *
5343756 GGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCATCATCGTC
550 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * * * *
5343821 GGAGCATCGTCGGAGAACCTTACCGACGGCATTGGGGATCCGACGATCGGGGGGGCC---GGGCT
615 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGT
* *
5343883 GTGTGCACAAGATGTGCGATGGGTGCTGGTACTTGG-CC------T-----CCTATCCCTCATCA
679 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
5343936 AACCTTGAGAACTTACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
744 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
5344001 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGT
809 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5344063 TTTTAGATGAGTGTTTTTGTGCATGCCAACAAAAATACAGGGATCAGGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
5344128 CAAAACTCCTTCCAAAAAAATTTAAAAAAAT-CTCGAACTGCAAAAAGTTTAAAAAATCGTAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAA
*
5344192 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
5344257 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTACCCAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
5344322 CTATCAATCCACGGCTTACGCGTCCCGTCTCTCTGGCCGATGCAGTGCCCGCCTGCCCGGCCGCT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCC-G-C-C-
* * *
5344387 CGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGGAC-
317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-GACT
* * ** * * *
5344450 CACAGGTTGCAGTA-CTAGGATCGACAGCACGTAGAGGGGGACCC-AGTCGATCCCCGACTTGCG
381 GA-GGGTTGTGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGAT-CCCGACTTGCG
* * * * * * * * * ** *
5344513 CATCGCACTCCTCTTGTCGGCTGAGCGCCCGGACGTTCATTTTC-TGAGTTGACCGAGGCATACG
442 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACA
5344577 GAGTTCATTCCCAGTCTAAGCAT
506 GAGTTCATTCCCAGTCTAAGCAT
5344600 ATGGAGTTCA
Statistics
Matches: 14025, Mismatches: 1862, Indels: 1519
0.81 0.11 0.09
Matches are distributed among these distances:
858 1 0.00
859 100 0.01
862 184 0.01
863 169 0.01
864 28 0.00
865 21 0.00
866 83 0.01
867 668 0.05
868 142 0.01
869 6 0.00
870 13 0.00
871 166 0.01
872 30 0.00
873 11 0.00
874 19 0.00
875 142 0.01
876 201 0.01
877 666 0.05
878 17 0.00
879 285 0.02
880 41 0.00
881 78 0.01
882 146 0.01
883 193 0.01
884 82 0.01
885 29 0.00
886 150 0.01
887 20 0.00
888 628 0.04
889 517 0.04
890 567 0.04
891 283 0.02
892 32 0.00
893 51 0.00
894 56 0.00
895 165 0.01
896 359 0.03
897 700 0.05
898 1019 0.07
899 781 0.06
900 179 0.01
901 898 0.06
902 155 0.01
903 1355 0.10
904 279 0.02
905 205 0.01
906 461 0.03
907 22 0.00
908 195 0.01
909 51 0.00
910 92 0.01
911 20 0.00
912 18 0.00
913 37 0.00
914 12 0.00
915 15 0.00
916 30 0.00
917 36 0.00
918 27 0.00
919 12 0.00
920 237 0.02
921 201 0.01
922 13 0.00
923 17 0.00
924 10 0.00
925 4 0.00
926 3 0.00
927 5 0.00
929 2 0.00
931 3 0.00
932 2 0.00
933 2 0.00
934 3 0.00
935 5 0.00
937 3 0.00
938 9 0.00
939 1 0.00
940 3 0.00
941 3 0.00
944 3 0.00
945 250 0.02
946 45 0.00
947 1 0.00
948 45 0.00
949 149 0.01
950 2 0.00
952 4 0.00
953 2 0.00
954 1 0.00
955 9 0.00
956 3 0.00
957 3 0.00
959 2 0.00
960 2 0.00
963 3 0.00
964 4 0.00
965 4 0.00
966 2 0.00
967 1 0.00
969 3 0.00
970 1 0.00
971 7 0.00
972 3 0.00
973 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTGAGGGTTGTG
GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGACTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGCATCGAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGT
Found at i:5337454 original size:25 final size:25
Alignment explanation
Indices: 5337420--5337467 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
5337410 GTTGACTTAG
*
5337420 GCATACGGAGTTCATTCCTAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
5337445 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
5337468 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:5338365 original size:26 final size:26
Alignment explanation
Indices: 5338329--5338380 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5338319 TTGACTTAGC
5338329 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
5338355 CATACGGAGTTTATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5338381 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5339262 original size:26 final size:26
Alignment explanation
Indices: 5339226--5339278 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5339216 GTTGACTTAG
5339226 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5339252 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5339278 G
1 G
5339279 ATCGGGTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5341912 original size:26 final size:26
Alignment explanation
Indices: 5341875--5341927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5341865 GTTGACTTAG
5341875 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
5341901 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5341927 G
1 G
5341928 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5343717 original size:26 final size:26
Alignment explanation
Indices: 5343681--5343733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5343671 GTTGACTTAG
5343681 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5343707 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5343733 G
1 G
5343734 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5344606 original size:26 final size:26
Alignment explanation
Indices: 5344570--5344622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5344560 GTTGACCGAG
5344570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5344596 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5344622 G
1 G
5344623 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5345358 original size:26 final size:26
Alignment explanation
Indices: 5345328--5345378 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5345318 GTTGACTTAG
5345328 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
5345354 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5345379 AGATTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:5346267 original size:26 final size:26
Alignment explanation
Indices: 5346231--5346280 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5346221 TTGACTTAGA
5346231 CATACGGAGTTAATTCCCAGTCTATG
1 CATACGGAGTTAATTCCCAGTCTATG
*
5346257 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTAATTCCCAGTCTA
5346281 AGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAGTCTATG
Found at i:5346457 original size:902 final size:892
Alignment explanation
Indices: 5344654--5347940 Score: 4205
Period size: 902 Copynumber: 3.7 Consensus size: 892
5344644 GGACAGCACA
* * *
5344654 TGCTAGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTCACACCCCCT
1 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
5344719 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
66 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * *
5344784 CTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAATTTTTTTTACGGAT
131 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AAA-TTTTTTTATGCAC
***
5344849 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGGAAAAACTCCTTCCGAAAAAATTT
194 GCCAACAAAAATACAAGGA-CACGTCTACCAAGTTTGGCACCAAAAA-TCCTTCCGAAAAAATTT
* * *
5344913 TAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCA
257 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
5344978 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGG
322 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
5345043 CATGCAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATC
387 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* * * * * *
5345108 TCGTCTCTCTGG-CTGACATAGTGCCCTACCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAAGCA
452 CCGTCTCTCTGGCCGGACGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
5345172 TATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGAATCGGCAGCA
517 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * * * * * *
5345237 TGTAGAGGGGGACCTGGCCGATCCCTGACTTGTGCATCCCGCCCATTTGGCCGGCTGAGCGCTCG
582 CGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCG
*
5345302 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGCATACGGAGTTC
646 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGCATACGGAGTTC
* * **
5345367 ATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
711 ATTCCCAGTCTAAGA-T-GACC-GACCGAGGGTTGCGGCAGCCCAACCTGGGCT-GGGCATGTGC
* * * * **
5345432 TGGTGCCACTTTTTTCTTCATCGGGGCACCATTACCGGAGCATCACCGGAGAACCTGACCGGTGG
772 TGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGG
* * * *
5345497 CATTAGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
836 CATTAGGG-TTCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
5345555 TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCCAGAACTCACACCCCCT
1 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
5345620 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CA
66 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
5345684 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGC
131 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTATGCACGC
* * * ** * *
5345749 CAAAAAAAATACAAGGATCACGTGTACAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTGAA
196 CAACAAAAATACAAGGA-CACGTCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTTAA
*
5345814 AAAAT-CTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
260 AAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
5345878 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
324 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
5345943 TGTAGAAATATGGAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
389 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* *
5346008 GTCTCTCTGGCC-GACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCATTTCTTCGGTTGGCTTAGG
454 GTCTCTCTGGCCGGACGTAGT----GCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
5346072 CATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGTAGGATTGATAG
515 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * *
5346137 CATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCC
580 CACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCC
* * * *
5346202 CGCACGCTCGTTTTATCGGTTGACTTAGACATACGGAGTTAATTCCCAGTCTATGCATACGGAGT
644 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGCATACGGAGT
5346267 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCCCAACCTGGGCCTGGGCATGT
709 TCATTCCCAGTCTAAGAT--GACC-GACCGAGGGTTGCGGCAGCCCAACCTGGG-CTGGGCATGT
* * * *
5346332 GCTGGTGCCACATTTTTCTTCGTC-GACAGCATCACCGGAGCATCGTCGGAGAACCTAACCGACG
770 GCTGGTGCCACATTTTTCTTCGTCGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACG
* * * *
5346396 ACATTGGGGTTCCGACGATCGAGGGGGTCGGAGGGGGTGTGCACACATGATTTGTGATGGG
835 GCATTAGGGTT-CGACGATCGAGGGGGTC-G-GGGGGTGTGCGCACATGATGTGTGATGGG
* *
5346457 TGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCT
1 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * * *
5346522 GAAAGAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGTCATTAAAGTGTTTGAAATAGGGACA
66 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
5346587 CTTTTTTCAAATGGTCACAACATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCACGC
131 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTATGCACGC
* * *
5346652 CAACAAAAATATAAGGACACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAAAAATTTTAAG
196 CAACAAAAATACAAGGACACGTCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTTAAA
* * *
5346717 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
261 AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5346782 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATG
326 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
5346847 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCCTGCGCATCCCGT
391 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * *
5346912 CTCTCTGGCCTG-CGTAGTGCCCGCCCGCCCGTCGGCCTGCTCGTTTGGTCGGTTGGCTTAGGCA
456 CTCTCTGGCCGGACGTAGTGCCCTCCCGCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
5346976 CACAGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGGCAGCAGGATCGACAACA
517 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* *
5347041 CGTAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTTTGGGCCCGGC-GAGCGGGC
582 CGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTT-GG-CCGGCTGAGC--GC
* * *
5347105 CCGTACGCTCATTTCGTGGGGTTGACTTAGGCATTACGGAG-TCATTCCCAGTC--T--A-A---
643 CCGCACGCTCGTTTCAT-GGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTATGCATACGG
* * *
5347161 A----ATT----G-----GATG---G--CGAGGGTCTGCGGCAG-CAAACATGCTTGGGCGGGGG
706 AGTTCATTCCCAGTCTAAGATGACCGACCGAGGGT-TGCGGCAGCCCAAC---C-TGGGCTGGGC
** *
5347207 ATGTATTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
766 ATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
5347272 CGACGGCATTAGGGTTC--CGA-CGA-----TCGGGGGGTGTGCGCACATGATGTGTGATGAGG
830 CGACGGCATTAGGGTTCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATG-GG
* *
5347328 -GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCCCCCT
1 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
5347392 AAAAGAGCATTTGAGCA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
66 TAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
5347456 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCACC
130 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTATGCACG
* *
5347521 CCAACAAAAATACAAGGACACGTCTACCAAGTTTGGCACCAAAACTCCTTTCGAAAAAATTTTAA
195 CCAACAAAAATACAAGGACACGTCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTTAA
* * * * *
5347586 AAAATCCAGAATCGGAAAAAGTTTCCAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGA
260 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
5347651 AACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCA-TGCACA
325 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-GCA
* * * * *
5347715 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCATGACTTGCGCATCCC
389 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * * *
5347780 TTCTCTCTAGCCGGA-GTAGTG----CCCACCCGCCCGCTCGTTTCCTCAGTTGGCTTAGGCATA
454 GTCTCTCTGGCCGGACGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * *
5347840 CGGA-TTCATTCCTAGTCTAAGATCAGATCAGATTGAGGGTTGTGGCAGCAGGATCGGCAGCACG
519 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
*
5347904 TAGAGGGGACCCGACCGAACCCCGGCTTGCGCATCCC
584 TAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
5347941 GCCCGCCCGT
Statistics
Matches: 2122, Mismatches: 228, Indels: 112
0.86 0.09 0.05
Matches are distributed among these distances:
861 86 0.04
862 27 0.01
863 2 0.00
865 1 0.00
866 7 0.00
869 2 0.00
870 453 0.21
871 4 0.00
872 2 0.00
876 11 0.01
877 11 0.01
878 4 0.00
879 30 0.01
880 5 0.00
881 45 0.02
882 1 0.00
884 3 0.00
889 1 0.00
893 3 0.00
897 3 0.00
898 270 0.13
899 13 0.01
900 101 0.05
901 162 0.08
902 743 0.35
903 86 0.04
904 15 0.01
905 24 0.01
906 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTATGCACGC
CAACAAAAATACAAGGACACGTCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTTAAA
AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
CTCTCTGGCCGGACGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
GAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGCATACGGAGTTCATTCC
CAGTCTAAGATGACCGACCGAGGGTTGCGGCAGCCCAACCTGGGCTGGGCATGTGCTGGTGCCAC
ATTTTTCTTCGTCGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTT
CGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGG
Found at i:5348167 original size:26 final size:26
Alignment explanation
Indices: 5348131--5348182 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5348121 TTGACTTAGC
5348131 CATACGAAGTTCATTCCCAGCCTAAG
1 CATACGAAGTTCATTCCCAGCCTAAG
* * *
5348157 CATACGCAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATTCCCAGCCTAAG
5348183 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGCCTAAG
Found at i:5351530 original size:25 final size:26
Alignment explanation
Indices: 5351479--5351530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5351469 GTTGACTTAG
5351479 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
5351505 GCATACGAAGTTCATT-CCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
5351530 G
1 G
5351531 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:5351832 original size:872 final size:875
Alignment explanation
Indices: 5350557--5353417 Score: 3435
Period size: 872 Copynumber: 3.2 Consensus size: 875
5350547 TGGCTGAGCA
** * * *
5350557 CCCGCACGCTCGTTTAATGGGTTCACTTAGGCATACGGAGTTCACTCCCAATCTAAGCAGAC-AG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGA-
* * ** *
5350621 AGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* *
5350686 TGTGCTGGTGCCGTATTTTTCTTC-CCAGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
130 TGTGCTGGTGCCGCATTTTTCTTCGCC-GAGGCACCATCGCCGGAGCATCGTCGGAGAACCT-A-
* *
5350750 CGACGGCATTGGGGTTCCAGCGATTGGGGGGGCCGGGGGGGGTATGCGCACATGATGTGCAATGA
192 --ACGGCA-T--GG-----GCGATT--GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATG-
* *
5350815 AG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
242 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
5350879 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT-AGGG
307 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGA-GG
* * *
5350943 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCGGAATTTTTTTTTGCA
371 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* *
5351008 TGCCAACAAAAATACAAGGA-CTACCTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAGAAATT
436 TGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTT-GAGCCAAAACTCCTTCCGAAAAAATT
* * * * *
5351072 TTAAAAAATCTTGAACCGCAAAAAGTTTAAAAAATCACGAAAAATAGAAAATGAGTCATCTTGCC
499 TTAAAAAATCTGGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTACC
5351137 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
564 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
5351202 GCACATAGAAATATGAAGATGTGCCTAAATCCACCTACTATCCTATCGATCTACGGCTTGCGCAT
629 GCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCAT
* *
5351267 CCCGTCTCTTTGGTCGACGTAGTGCCAGCCCGCT-CG-TTCGTCGGTTGGCTTAGGCATACGAAA
694 CCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGCTCCGTTTCGTCGGTTGGCTTAGGCATACGAAG
* * * * * *
5351330 TTCATTCCCAGTCTAAGATTAGACTGGATTAAGGGTTACGATAGTAGGATCGATAGCATGCAGCG
759 TTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGATAGTAGGATCGACAGCACGCAGAG
* *
5351395 GAGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCGGGTTAACTG
824 G-GGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTAAC-G
* **
5351449 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACGAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
* * * *
5351514 GTTCATT-CCAATCTAAGATCGAACTGGACCAAGGGTT-CTGGCAGCACATACTGGGCTCGGGCA
66 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCA
* * * *
5351577 TGTGCTGGTGCCGTATTTTTCTTCGCCGATGCACCATCGCCGGAGCATCGTCAGAGAACCTAACC
130 TGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACG
* *
5351642 G-AT-GGC-ATTGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCT
195 GCATGGGCGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
5351704 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGA
260 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
5351769 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTGAAATGGTC
325 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTC
* * * * *
5351834 GCAAAATCTTGTACACTTCGGGTTTTTACCTGAATTTTTTTATGGATGCCAACAAAAATACAGGG
390 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGG
* * *
5351899 ATCACGTCTACCAAGTTTCAGGCCAAAACTCCTTACGAAAAAATATTAAAAAATCTGGAACCGTA
455 ATCACGTCTACCAAGTTTGA-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACCGTA
** * *
5351964 AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTACAATGAAACTTCACGTGAAGGC
519 AAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGC
* * * *
5352029 TTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGAT
584 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
** * * * *
5352094 GCACCTAAACCCACCTACCATCCTATTGATCCATGGCTTGCGCATCCCATCTCTTTGGTCGACGT
649 GTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGACGT
*
5352159 AGCGCCCGCCCGCCCGTCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCGCA-ACG-AGTTC
714 AGTGCCCGCCCG--C-T---------C-C--GTTTCGTCGGTTGGCTTA-G-GCATACGAAGTTC
* * * ** * * *
5352222 ATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTGTGGCAGTAGGATTGGCAACACGCAGAGGG
762 ATTCCCAGTCTAAGATCAGACT-GGATTGAGGGTTGCGATAGTAGGATCGACAGCACGCAGA-GG
* *
5352286 GGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCG
825 GGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTT-AACG
* *
5352338 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAATCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
* * * * * * *
5352403 CTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCGCATGCTGGGCTCGGCCAT
66 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * * * * * * * * *
5352468 GTGCTGGAGCCACATTTTTCTTCGTCGGGGCATCGT-GCCGGAGAACCTGATCGGTG-ACATTAG
131 GTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATC-G-TCGGAGAACCTAAC
** * * * * * *
5352531 GGTTTCGACGATCAGGGGGGCTGGGGGGTGTTCGCACATGATGTGCGGTGGGTGCTGGTACTTGG
194 GGCATGGGCGAT--TGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
5352596 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTG
257 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
** * * *
5352661 AGATTTTACAGGTTTGCTGTTAGTAACCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATG
322 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATG
* * **
5352726 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACACCAACAAAAATACA
387 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
* ** * *
5352791 AGGATCAGGTCTAAAAAGTTTAGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACT
452 AGGATCACGTCTACCAAGTTT-GAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACC
** *
5352856 GTAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCTTGAAACTTCACGTGAA
516 GTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAA
* * *
5352921 GGCTTAATGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAA
581 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * * *
5352986 GATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
646 GATGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGA
*
5353051 TGTAGTGCTCGCCCGCCCGCTCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCAT
711 CGTA--G-T-GCCCGCCCGCT---CCG----TTTCGTCGGTTGGCTTAGGCATACGA-AGTTCAT
* * * * * * *
5353115 TCCCAGTCTTAGATCAGACCGAATCGAGGGTTGCGATAGCAAGATC-AGCAGCACGTAGAGGGGT
764 TCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGATAGTAGGATCGA-CAGCACGCAGAGGGG-
* * * * * ** *
5353179 ACCCGATCGATCCCTGTCTTGCGCGTCCTG-CACTCTGGCCCACTGAGAC-
827 ACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGG-CCGGTTA-ACG
* * *
5353228 CCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCACAATCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
5353293 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * ** * *
5353358 GTGCTGGTGCCGCATTTTTCTTTGTCG-GTGCACCATCGTTGGAGCATCGCCTGAGAACCT
131 GTGCTGGTGCCGCATTTTTCTTCGCCGAG-GCACCATCGCCGGAGCATCGTCGGAGAACCT
5353418 GATCGGTAGC
Statistics
Matches: 1687, Mismatches: 224, Indels: 118
0.83 0.11 0.06
Matches are distributed among these distances:
871 2 0.00
872 458 0.27
873 2 0.00
874 8 0.00
875 1 0.00
876 3 0.00
877 2 0.00
882 1 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 2 0.00
889 193 0.11
890 263 0.16
891 210 0.12
892 66 0.04
893 3 0.00
895 454 0.27
896 1 0.00
897 2 0.00
899 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAA
GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACGG
CATGGGCGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACCGTAAA
AAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
GCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGACGTAG
TGCCCGCCCGCTCCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACTGGATTGAGGGTTGCGATAGTAGGATCGACAGCACGCAGAGGGGACCCGATCGATCCCCGGCT
TGTGCATCCTGCCCCTCTGGCCGGTTAACG
Found at i:5353029 original size:895 final size:883
Alignment explanation
Indices: 5350551--5353385 Score: 3505
Period size: 895 Copynumber: 3.2 Consensus size: 883
5350541 GATCGCTGGC
* ** * *
5350551 TGAGCACCCGCACGCTCGTTTAATGGGTTCACTTAGGCATACGGAGTTCACTCCCAATCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
* * * * ** *
5350616 GACAGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTC
66 TACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
*
5350681 GGGCATGTGCTGGTGCCGTATTTTTCTTCCCAGAGGCACCATCGTCGGAGCATCGT--CGGAGAA
131 GGGCATGTGCTGGTGCCGCATTTTTCTT--C----G-----TCG--GG-GCATCGTGCCGGAGAA
* * * * *
5350744 CCTGA-CCGACGGCATTGGGGTTCCAGCGATTGGGGGGGCCGGGGGGGGTATGCGCACATGATGT
182 CCTGATCGGA-GACATTAGGGTTCGA-CGA-T-GGGGGGCCGGGGGGTGT-T-CGCACATGATGT
* * *
5350808 GCAATGAAG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
241 GCGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5350872 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAA
305 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5350937 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCGGAATTTTTT
370 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
5351002 TTTGCATGCCAACAAAAATACAAGGA-CTACCTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAA
435 TATGCATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTAG-GCCAAAACTCCTTCCGAA
* * * * * *
5351066 GAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTAAAAAATCACGAAAAATAGAAAATGAGTCAT
498 AAAATTTTAAAAAATCTGGAACCGTAAAAAGTTT-TAAAATCATGAAAAATAGAAAATGAGTCGT
* *
5351131 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
562 CTTACCATGAAACTTCACGTGAAGGCTTAA-GAACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5351196 GCATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACTATCCTATCGATCTACGGCTT
626 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTT
*
5351261 GCGCATCCCGTCTCTTTGGTCGACGTAGTGCCAGCCCG--C-T---------CG-TTCGTCGGTT
691 GCGCATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCACGTTTCGTCGGTT
* * * * * *
5351313 GGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATTAGACTGGATTAAGGGTTACGATAGTAGG
756 GGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCAGAC-AGAATGAGGGTTGCGATAGTAGG
** * * * * *
5351378 ATCGATAGCATGCAGCGGAGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCGGGT
819 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGT
* * **
5351443 T-AACTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGC
1 TGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
* * * * *
5351507 ATACGAAGTTCATT-CCAATCTAAGATCGAACTGGACCAAGGGTT-CTGGCAGCACATACTGGGC
65 ATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGC-GACAGCACATGCTGGGC
* * ** * * * * *
5351570 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGATGCACCATCGCCGGAGCATC-G-TCAGAG
129 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCGT-GCCGGAGAACCTGATCGGAG
* * ** * * * * *
5351633 AACCTAACCGAT-GGC-ATTGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA
193 -ACATTAGGGTTCGACGATGGGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTA
* * *
5351696 CTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGC
257 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
5351761 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTG
322 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
5351826 AAATGGTCGCAAAATCTTGTACACTTCGGGTTTTTACCTGAATTTTTTTATGGATGCCAACAAAA
387 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
* * *
5351891 ATACAGGGATCACGTCTACCAAGTTTCAGGCCAAAACTCCTTACGAAAAAATATTAAAAAATCTG
452 ATACAAGGATCACGTCTACCAAGTTT-AGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTG
* *
5351956 GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTACAATGAAACTTCAC
516 GAACCGTAAAAAGTTTT-AAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCAC
* * *
5352021 GTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAAT
580 GTGAAGGCTTAAGA-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
** * * * *
5352086 ATGAAGATGCACCTAAACCCACCTACCATCCTATTGATCCATGGCTTGCGCATCCCATCTCTTTG
644 ATGAAGATGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
*
5352151 GTCGACGTAGCGCCCGCCCGCCCGTCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCGCA-A
709 GTCGACGTAGTGCCCGCCCGCCCGTCCGCCCG--CAC--GTTTCGTCGGTTGGCTTA-G-GCATA
* * ** * *
5352215 CGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGTAGGATTGGCAACACGC
768 CGAGTTCATTCCCAGTCTAAGATCAGA-CAGAATGAGGGTTGCGATAGTAGGATCGGCAGCACGC
*
5352280 AGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGT
832 AGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGT
*
5352332 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAATCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
* * * * * *
5352397 TACGGACTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCGCATGCTGGGCTC
66 TACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * *
5352462 GGCCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCATCGTGCCGGAGAACCTGATCGGTGACA
131 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCGTGCCGGAGAACCTGATCGGAGACA
* *
5352527 TTAGGGTTTCGACGATCAGGGGGGCTGGGGGGTGTTCGCACATGATGTGCGGTGGGTGCTGGTAC
196 TTAGGG-TTCGACGAT--GGGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTAC
* *
5352592 TTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
** * *
5352657 TTTGAGATTTTACAGGTTTGCTGTTAGTAACCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * **
5352722 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACACCAACAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* **
5352787 TACAAGGATCAGGTCTAAAAAGTTTAGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGG
453 TACAAGGATCACGTCTACCAAGTTTAG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGG
* *
5352852 AACTGTAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCTTGAAACTTCACG
517 AACCGTAAAAAGTTT-TAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACG
*
5352917 TGAAGGCTTAATGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATA
581 TGAAGGCTTAA-GAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* *
5352982 TGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
645 TGAAGATGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG
* ** * ** *
5353047 CCGGTGTAGTGCTCGCCCGCCCG-CTCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGT
710 TCGACGTAGTGCCCGCCCGCCCGTC-CGCCCGCACGTTTCGTCGGTTGGCTTAGGCATAC-GAGT
* * * * * *
5353111 TCATTCCCAGTCTTAGATCAGACCGAATCGAGGGTTGCGATAGCAAGATCAGCAGCACGTAGAGG
773 TCATTCCCAGTCTAAGATCAGACAGAAT-GAGGGTTGCGATAGTAGGATCGGCAGCACGCAGAGG
* * * * * * ***
5353176 GGTACCCGATCGATCCCTGTCTTGCGCGTCCTG-CACTCTGGCCCAC
837 GGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGT
* *
5353222 TGAGAC-CCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCACAATCTAAGC
1 TGAG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
5353286 ATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCT
65 ATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCT
*
5353351 CGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGG
130 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
5353386 TGCACCATCG
Statistics
Matches: 1666, Mismatches: 227, Indels: 102
0.84 0.11 0.05
Matches are distributed among these distances:
871 2 0.00
872 447 0.27
873 2 0.00
874 16 0.01
875 2 0.00
876 1 0.00
877 6 0.00
878 1 0.00
879 8 0.00
880 9 0.01
885 1 0.00
886 1 0.00
888 1 0.00
889 191 0.11
890 256 0.15
891 175 0.11
892 65 0.04
893 3 0.00
894 3 0.00
895 473 0.28
896 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
TACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCGTGCCGGAGAACCTGATCGGAGACA
TTAGGGTTCGACGATGGGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACC
GTAAAAAGTTTTAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAG
GCTTAAGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
TGTGCCTAAATCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGACG
TAGTGCCCGCCCGCCCGTCCGCCCGCACGTTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCC
AGTCTAAGATCAGACAGAATGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGA
TCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGT
Found at i:5353294 original size:26 final size:26
Alignment explanation
Indices: 5353258--5353310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5353248 GTTTACTTAG
5353258 GCATACGGAGTTCATTCACAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
*
5353284 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
5353310 G
1 G
5353311 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:5353601 original size:26 final size:26
Alignment explanation
Indices: 5353572--5353624 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5353562 GTTGACTTAG
5353572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5353598 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5353624 G
1 G
5353625 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5353748 original size:314 final size:314
Alignment explanation
Indices: 5353211--5353777 Score: 786
Period size: 314 Copynumber: 1.8 Consensus size: 314
5353201 GCGTCCTGCA
* *
5353211 CTCTGGCCCACTGAGACCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCA
1 CTCTGGCCAACTGAGACCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCA
* * *
5353276 CAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAC
66 CAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGAGTTACGACAGCAC
* * *** * ** *
5353341 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGTGCACCATCGTTGGAGCATC
131 ATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCACCGGTCCACCATCGCCGGAGAATC
* * * *
5353406 GCCTGAGAACCTGATCGGTAGCATTGGGGTTCCGATGATCGAGG-GGGCCGGGGGGGTGGTAGCA
196 ACCGGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCG-GGAGGGCCGGGGGGGTGGTAGCA
5353470 GGATTGGCAACATGTAGTGGGGGACCCGATCGATCCTCAGCTTGCGATCCCACCC
260 GGATTGGCAACATGTAGTGGGGGACCCGATCGATCCTCAGCTTGCGATCCCACCC
* * *
5353525 CTCTGGTCAACTGAG-CGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
1 CTCTGGCCAACTGAGAC-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * * *
5353589 CCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATTGGACCGGTCCGCA-AGTTACGGCAGC
65 ACAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCG-AGAGTTACGACAGC
*
5353653 ACATGCTGGGCTCGAGCATGTACTGGTGCCGTATTTTTCTTCACCAGG-CCACCATCGCCGGAGA
129 ACATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCACC-GGTCCACCATCGCCGGAGA
5353717 ATCACCGGAGAACCTGACC-G-ACGACATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTG
193 ATCACCGGAGAACCTGACCGGTA-G-CATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTG
5353778 TGAGCACATG
Statistics
Matches: 219, Mismatches: 28, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
312 1 0.00
313 5 0.02
314 210 0.96
315 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (314 bp):
CTCTGGCCAACTGAGACCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCA
CAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGAGTTACGACAGCAC
ATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCACCGGTCCACCATCGCCGGAGAATC
ACCGGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGGTAGCAG
GATTGGCAACATGTAGTGGGGGACCCGATCGATCCTCAGCTTGCGATCCCACCC
Found at i:5355277 original size:431 final size:430
Alignment explanation
Indices: 5354472--5355328 Score: 1215
Period size: 431 Copynumber: 2.0 Consensus size: 430
5354462 GTTGACTTAG
** * * *
5354472 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGGACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATACTGGG
** * * *
5354537 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTTGTTGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTTGCGACACCATCACCGGAGCATCGTCGGAGA
** * * **
5354602 ACCTGGCCGACGGCATTGGGGTTCTGGTGATCGGGGGGGCTGGATGGGGGGTGTGTGCACACATG
131 ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCTGGA--GGGGGTGTGTGCACACATG
*
5354667 ATGTGCAATGGGTGTTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTGAGAACT
194 ATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTGAGAACT
*
5354732 CACACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CACACCCCCTGAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5354797 ATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAGCTGAATTTTTTT
324 ATAGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTT
*
5354862 GTCCATGCCAACAAAAATACAAGGATCACGTCTACCAGTCTAT
389 GTCCACGCCAACAAAAATACAAGGA-CACGTCTACCAGTCTAT
* *
5354905 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCCCA-ACCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATA-CTGG
* *
5354969 GC-CTGGGCATGTGCTGGTGCCACATTTTTCTTCG-T-CGACAGCATCACCGGAGCATCGTCGGA
65 GCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGTTGCGACACCATCACCGGAGCATCGTCGGA
* *
5355031 GAACCTAACCGATGACATTGGGGTTCCGACGATCGAGGGGG-TCGGA-GGGG-GTGTGCACACAT
129 GAACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCT-GGAGGGGGTGTGTGCACACAT
* ** *
5355093 GATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGA
193 GATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCT-GAGA
* * * *
5355158 ACTCAGACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGTCATTAAAGTGTT
256 ACTCACACCCCCTGAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* **
5355223 TGAAATAGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTGGCTGAATT
320 TGAAATAGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATT
* *
5355288 TTTTTGTGCACGCCAACAAAAATATAAGGACACGTCTACCA
384 TTTTTGTCCACGCCAACAAAAATACAAGGACACGTCTACCA
5355329 AGTTTGGCAC
Statistics
Matches: 377, Mismatches: 40, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
427 47 0.12
428 23 0.06
429 31 0.08
430 57 0.15
431 133 0.35
432 3 0.01
433 83 0.22
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (430 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATACTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTTGCGACACCATCACCGGAGCATCGTCGGAGA
ACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCTGGAGGGGGTGTGTGCACACATGAT
GTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTGAGAACTCA
CACCCCCTGAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
AGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGT
CCACGCCAACAAAAATACAAGGACACGTCTACCAGTCTAT
Found at i:5355811 original size:26 final size:26
Alignment explanation
Indices: 5355781--5355833 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5355771 GTTGACTTCG
* *
5355781 GCATACAGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5355807 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5355833 G
1 G
5355834 ATTCGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5356696 original size:26 final size:26
Alignment explanation
Indices: 5356667--5356719 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5356657 GTTGACTTAG
* * *
5356667 GCATACGGAGTTCTTTTCTAGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
5356693 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
5356719 G
1 G
5356720 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:5357541 original size:26 final size:26
Alignment explanation
Indices: 5357511--5357564 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
5357501 TGGGTTGACT
*
5357511 TAGGCATAGGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
5357537 TAGGCGTACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
5357563 TA
1 TA
5357565 ATATCAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:5359289 original size:26 final size:26
Alignment explanation
Indices: 5359259--5359311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5359249 GTTGACTTAG
*
5359259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5359285 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5359311 G
1 G
5359312 ATCAACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5360258 original size:896 final size:898
Alignment explanation
Indices: 5358399--5362436 Score: 5338
Period size: 885 Copynumber: 4.5 Consensus size: 898
5358389 GTTGACTTAG
*
5358399 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
* *
5358464 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCAT----------T-GTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* ** * * * *
5358518 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCAGGGGGTGCGCGCATATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
* *
5358583 GATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5358648 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5358713 GGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACA--C---TTTTTAGCTGAATTTTTTTGTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
5358773 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
5358838 TTTGAAAAATCCCAAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC-GTCTTG
456 TTTAAAAAATCCCAAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAG-CTTG
* *
5358902 CCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCA-ATAAAATGGCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCA
* * * *
5358966 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTG
584 TTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
5359031 CATCCCGTCTCTTTGGCCGGCGTAGTACCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCATCTCTTTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * * * * **
5359096 TTAGGCATACGGAGTTCATTCCTATTCTAAGTTTGGACCAGACAC-CGGGTTGCGACAGCAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGAC-CGAGGGTTGCGGTAGCAGGAT
* * * * * * ** * *
5359160 TGGTAGCACGTAGAAGGGGACCTAGCCGATCCCTGACTTGCATATCCCT-TCCCTCTGGCTGGCT
774 TGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCT
* *
5359224 GAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
5359285 GCATACGAAGTTCATTCCCAGTCTAAGATCA-ACCAGACCAAGGGTTACGGTAGCACATAATGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
* * * * *
5359349 CTAGGGCATGTGCTGGTGCCGCATTTTTATTCACCGAGGCACCATCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
5359414 ACCCGATCGACGGCATTGGGGTTCTGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTTC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
* * * *
5359479 GATGGGTGCTGGTACTTGGCCCTTATGTTGGTCCCCTATGCCTCATCAAACCTGGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5359544 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5359609 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTCCATTGCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATT-CGAGTTTTTAGCTGAATTTTTTTGT
* *
5359674 GCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * **
5359739 TTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCAGCTTG
455 TTTTAAAAAATCCCAAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAGCTTG
*
5359804 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
5359869 TGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATC-ATCCACGGCTTGCGC
585 TGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * **
5359932 ATCCCATTTCTCTGGCCGACGTAGTGCCCGTCCGCCCGTTCGCTCGTTTCATCGGTTGGCTTAGG
650 ATCCCATCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * *
5359997 CATACGGAATTCATTCCCGGTCTAAGATCGGAGC-AGACCGAGGGTTGTGGTAGCAGGATTGGTA
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGAGGGTTGCGGTAGCAGGATTGGCA
* * *
5360061 GCATGCAGAGGGGGACCTGGCCGATCCCCGGGTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
5360126 CCGCACACTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5360181 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
* * * * * *
5360246 CTTGGG-ATGTGCTGGGGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAG-AAC--C---TA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
5360304 ACC--A--G-CGGCATTGGGGATCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
* * **
5360364 GATGGGTGCTGGTATTTGGCCCTTATATTGGGCCCCTATCGATCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
5360429 CCCCCTTAAAGTGCATTTGAGATTTTGCAAGTTTGCTACAAGTAGCCATTAAAGTATCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5360494 GGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
5360559 GCATGCCAATAAAAATACAAGGATCTCATCTACCAAATTTGGAGCCAAAAATCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
5360624 TTTTAAAAAATCCCGAATCATAAAAAGTTCTAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCAAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAGCTTG
*
5360689 CCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * * * * * *
5360754 TGGGATGCAGAAATTTGAAGATGTGGCTAGACCCACCTATCGCCCTATCGATCCATGGCTTGCGC
585 TGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
5360819 ATCCCATCTCTTTGGCTGGCGTAGTGCCCGCCTGCCCACCCGCCCGCTGGCTTCGTCGATTGGCT
650 ATCCCATCTCTTTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * *
5360884 TAGGCATACGGAGCTCATTCCTAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCAGGATTG
* * * *
5360949 GCAGCATGCA-ATCGGGGACCTGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
776 GCAGCACGCAGA-GGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
** * * * *
5361013 GTACCCGCACGCTTGTGTCGTGGGTTGACTT-GCGCATAGGGTGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5361072 GTATATGGAGTTCATTCCCAGTCTAAGATCAAACTAGACTAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
* * * * * ** *
5361137 TTTGGGCATGTG-TCGGTGCCGAATTTTTCTTCACCGGGCCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAG
** * * * **
5361201 AACCTGACCGTTGGCATTGGGGTTCTGATGAT-AGGGGGCTGAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CCGGGGGGTGTGCGCACATGATGT
* * **
5361265 GCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTT
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5361330 CACCCTCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5361395 TGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTACAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTCGAGTTTTTAGCTGAATTTTTTT
* * *
5361460 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** *
5361525 AATTTTAAAAAATCCCGAATCGCAAAAAGTTTCGAGAATCATGAAAAATAGAAAAATAGTCATCT
453 AATTTTAAAAAATCCCAAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAGCT
* * *
5361590 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAGGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5361655 ATTGGT-CAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
583 ATTGGTACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5361719 CGCATCCCGTCCCTTTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
647 CGCATCCCATCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* ** * * * *
5361784 AGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACTGGATCAAGGGTTACGAG-AGCAGGATTG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCG-GTAGCAGGATTG
* * * * ** * *
5361848 ACAGCACGTAGAGGTGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGTTGAG
776 GCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* *
5361913 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5361971 GCATACGGAGTTCATTGCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGATAGCACATCCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
* * * *
5362036 CTCGGGCAAGTGTTGGTGCCGCATTTTTCTTCATCGGGGTACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
5362101 ACCTGACCGACGGCATTGAGGTTCCGTCGATC-GGGGGCCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
5362165 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
5362230 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
5362295 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGTGTTTTTGGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5362360 AG-ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACCCCTTCCGAAAAA
390 -GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
5362424 ATTTTAAAAAATC
454 ATTTTAAAAAATC
5362437 TCGCGTGCCC
Statistics
Matches: 2747, Mismatches: 351, Indels: 96
0.86 0.11 0.03
Matches are distributed among these distances:
885 512 0.19
886 36 0.01
887 36 0.01
888 1 0.00
889 1 0.00
890 9 0.00
891 245 0.09
892 36 0.01
893 3 0.00
895 8 0.00
896 470 0.17
897 34 0.01
898 280 0.10
899 319 0.12
900 41 0.01
901 4 0.00
902 248 0.09
903 464 0.17
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAGCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCATCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCAGGATTGGCAGC
ACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5361981 original size:26 final size:26
Alignment explanation
Indices: 5361945--5361997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5361935 GTTGACTTAG
5361945 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5361971 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5361997 G
1 G
5361998 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5362671 original size:26 final size:26
Alignment explanation
Indices: 5362635--5362684 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5362625 TGACTTAGGA
*
5362635 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
5362661 ATACGAAGTTCATTGCCAGTCTAA
1 ATACGAAGTTCATTCCCAGTCTAA
5362685 AATTGTACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:5363114 original size:689 final size:688
Alignment explanation
Indices: 5361755--5363126 Score: 1986
Period size: 688 Copynumber: 2.0 Consensus size: 688
5361745 GTGCCCGCCC
* * *
5361755 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGAC
1 GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
5361820 TGGATCAAGGGTTACGAGAGCAGGATTGACAGCACGTAGAGGTGGACCCGATCGATCCCCGGCTT
66 CGGACCAAGGGTTACGAGAGCAGGATAGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTT
* * ** * * *
5361885 GCGCATCCTGCCCCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
131 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGAATA
* * *
5361950 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGACCAGACCGGACCGAGG
196 CAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGAACAGACCAGACCGAGG
* * * * * *
5362015 GTTGCGATAGCACATCCTGGGCTCGGGCAAGTGTTGGTGCCGCATTTTTCTTCATCGGGGTACCA
261 GTTACGACAGCACATCCTGGGCTCGGGCAAGTGCTGGTGCCGCATTATTCTTCACCGGGGCACCA
* *
5362080 TCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGTCGATCGGGGGCCCGGGG
326 TCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGAGGTTCCGTCGATCGGGGGCCCGGGG
5362145 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
391 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
5362210 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
456 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* **
5362275 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGTGT
521 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCAAAAAATCTTGTACACTTCAAGT
* * * * *
5362340 TTTTGGCTGAATTTTTTTATAGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCC
586 TTTTAGCTGAATTTTTTTATACACGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTGGGCC
*
5362405 CAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGCGT
651 CAAAACCCCTTCCAAAAAAATTTTAAAAAATCTCGCGT
* ** *
5362443 GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATCATAC
1 GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * **
5362508 CGGACCAAGGGTTATG-GTAGCAGGATCAG-TAGCACGTAGAGGGGGACCCCG-CCGATCCTTGG
66 CGGACCAAGGGTTACGAG-AGCAGGAT-AGACAGCACGTAGAGGGGGA-CCCGACCGATCCCCGG
* * * *
5362570 CTTGTGCATCCCGCTCTTCTGGCCGACTGAGCGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGA
128 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGA
* **
5362635 ATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAA-AATTGTACCAGACC
193 ATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGAACAG-ACCAGACC
* ** * *
5362699 GAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTATTCTTCGCCGGGGC
257 GAGGGTTACGACAGCACATCCTGGGCTCGGGCAAGTGCTGGTGCCGCATTATTCTTCACCGGGGC
* * *
5362764 ACCATCATCGGAGCATCATCGGAGAACCTGACC-AGCGGCATTGGGGTTTCGGT-GATCGGGGGG
322 ACCATCACCGGAGCATCATCGGAGAACCTGACCGA-CGGCATTGAGG-TTCCGTCGATC-GGGGG
* *
5362827 GCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
384 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5362892 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGTTTTTACAGGTTTGCTG
449 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5362957 CCAGTAGCCATTGAAGTGTCTGAAATGGTGACACTTTTTTCAAATGCTCACAAAATCTTGTACAC
514 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCAAAAAATCTTGTACAC
* * *
5363022 TTCAAGTTTTTAGCTGAATTTATTTT-TCCACGCTAA-AACAAATACAAGGAACACGTCTGCCAA
579 TTCAAGTTTTTAGCTGAATTT-TTTTATACACGCCAACAA-AAATACAAGGAACACGTCTACCAA
* *
5363085 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
642 GTTTGGGCCCAAAACCCCTTCCAAAAAAATTTTAAAAAATCT
5363127 TGAACCGTAA
Statistics
Matches: 606, Mismatches: 69, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
687 4 0.01
688 311 0.51
689 287 0.47
690 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (688 bp):
GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCAAGGGTTACGAGAGCAGGATAGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGAATA
CAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGAACAGACCAGACCGAGG
GTTACGACAGCACATCCTGGGCTCGGGCAAGTGCTGGTGCCGCATTATTCTTCACCGGGGCACCA
TCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGAGGTTCCGTCGATCGGGGGCCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCAAAAAATCTTGTACACTTCAAGT
TTTTAGCTGAATTTTTTTATACACGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTGGGCC
CAAAACCCCTTCCAAAAAAATTTTAAAAAATCTCGCGT
Found at i:5364199 original size:902 final size:899
Alignment explanation
Indices: 5362443--5368606 Score: 7736
Period size: 902 Copynumber: 6.9 Consensus size: 899
5362433 AATCTCGCGT
* * ** *
5362443 GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATCATAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** ** * * * * **
5362508 CGGACCAAGGGTTATGGTAGCAGGATCAGTAGCACGTAGAGGGGGACCCCG-CCGATCCTTGGCT
66 CAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGA-GGGGA-CCCGATCGATCCCCGGCT
* * * * * *
5362572 TGTGCATCC-CGCTCTTCTGGCCGACTGAGCGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGAA
129 TGCGCATCCAC-C-CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
5362636 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAAATTGTACC-AGACCG
192 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGA-TGGACCGA-ACCG
*
5362700 AGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTATTCTTCGCCGGGGCA
254 AGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * **
5362765 CCATCATCGGAGCATCATCGGAGAACCTGACC-AGCGGCATTGGGGTTTCGGTGATCGGGGGGGC
319 CCATCACCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGC
*
5362829 CGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
382 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
5362894 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGTTTTTACAGGTTTGCTGCC
447 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
5362959 AGTAGCCATTGAAGTGTCTGAAATGGTGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTT
512 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
5363024 CAAGTTTTTAGCTGAATTTATTTT-TCCACGCTAA-AACAAATACAAGGAACACGTCTGCCAAGT
577 CGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGT
* ** *
5363087 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTC-AGAAAT
640 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGA-AAAT
* *
5363151 CGTAAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
704 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
5363216 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAAATGTTCCTAAACCCACC
769 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACC
* **
5363281 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGAACCCGCCCG-CC
834 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACC
5363345 A
899 A
* * * * * *
5363346 GCCTGCCCGCTAGTTTCGTGGGTTGGCTTCA-GCATACGGAGTTCATTCCCAGTCTAAGCTTAGA
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * *
5363410 CCAGATTGAGGGTTGCGACAGCAGGTTAGGCAGCATGCAGAAGGGGACCCTATCGATCCCCGGCT
65 CCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG-AGGGGACCCGATCGATCCCCGGCT
* * * *
5363475 TGCGCATCTCATCCCTTTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
129 TGCGCATC-CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
5363540 ACGAAGTTCATTCCCAGTCTAAGTATATGGAGTTCATTGCCAGTCTAAGATTGTACCGAACCGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGA-TGGACCGAACCGAG
*
5363605 GGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTATTCTTCGCCGGGGCACC
256 GGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* *
5363670 ATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGACCGGG
321 ATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
*
5363735 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTAGG-CCCCTATCCCT
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCT
* *
5363799 CATCAAACCTCGAGAACTCACATCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
450 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5363864 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
515 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * * *
5363929 GTTTTTGGCAGAATTCTTTTGTGCTTGCCAACACAAATACAAGGATCATGTCTACCAGGTTTGGG
580 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
5363994 GCAAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAT
645 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAA
* *
5364059 AAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAAT
710 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
5364124 TTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCAC
775 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCAC
* * *
5364189 CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGG-CGACGTAGTGCCCGCCCGCCCA
840 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
* * * * * *
5364248 -CCCGCTCGCTCATTTCATCGGTTTGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGGC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * ** ** ** *
5364312 GGGATCGAGGGTTGCGGCAGCAAAATCGATAGCACGCAGAAGGGGACCCGGCCGATCCCCAGCTT
66 CAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG-AGGGGACCCGATCGATCCCCGGCTT
* * *
5364377 GCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
130 GCGCATCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
5364442 -AGAGTTCATTCCCAG--T---C-TA---AG---A---C---C----A--GACCGGACCGAGGGT
194 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATGGACCGAACCGAGGGT
** * * * **
5364482 TACGGCAGCACATCCTGGGCTCGGGCAAGTGTTGGTGCCGCATTTTTATTCATCGGGGCACCATC
259 TACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
** * * * *
5364547 GTCGGAGCATCATCGGAGAACCTGACCCACGGCATTGGGGTTCCGTCGATCGGGGGCCCGGGGGG
324 ACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGG
5364612 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
388 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
5364677 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
453 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
5364742 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGT
518 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
5364807 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCG
583 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
5364872 ACAAA-TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAA
648 A-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
* * *
5364936 ATAGAAAACTAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGGCCATTGTATGAATTT
712 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
5365001 ACAAGTCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACAC
777 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCC
5365066 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACC-
842 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
* ** * * * *
5365123 GCCCACCTACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCGCAGTCTAAGATCAGAT
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * *
5365188 CGGACCGAGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGTGGGACCC-AGCCAATCCCCAAG-
66 CAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAG-GGGACCCGA-TCGATCCCC-GGC
* *
5365251 TTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTC-CGCTCGTTTCGTGGGTTGACTTAGGC
128 TTGCGCAT-CCACCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
5365315 ATACGGAGTTCATACCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACTGGACCG
191 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGAT-GGACCGAACCG
* ** * *
5365380 AGCGTTGTGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG--
254 AGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * ** * *
5365443 --A--A-C----CATCGTCGGAGAATCAGACCGGTGACATTGGGGTTCCGACGATCGGGGGGCTG
319 CCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG
* * *
5365499 GAGGGATGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATAC
384 G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5365564 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
448 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5365629 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTT
513 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** *
5365694 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGGAAAAATACAACGATCACGTCTACCAAGTTTG
578 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
5365759 GGACCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCGAACCTCAAAAAGTTTTGAAAATCGTG
643 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTG
* *
5365824 AAAAATAGAACACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
708 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * * * *
5365889 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAA-GTTCGTAAACCCACATAC
773 ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAA-AATGTGCCTAAACCCACCTAC
5365953 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCA
837 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
* * * *
5366012 -CCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
5366076 CAGACCAAGGGTTGC-AGCAACAGGATCGGCAACACGCAG-GGGCAGACCCAATCGATCCTCGGC
66 CAGACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAGAGGG--GACCCGATCGATCCCCGGC
* *
5366139 TTGCGCATCC-CGCCCTTCTGGCCGGCTGAGCGCCCGCACACTCGTTCCGTGGGTTGACTTAGGC
128 TTGCGCATCCAC-CCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
5366203 ATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T-C-G-----GA---CCCG-ACCGAG
191 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATGGACCGAACCGAG
* * * * * * * * *
5366244 GGTTGCGGTAGCACTTGCTGGGCTCAGGCATGTGCTGGCGCTGCATTTTTCTTCGTCAGGGCACC
256 GGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * *
5366309 ATCTCCGGAGCATCATTGGAGAACCTGACCGACGGCATTGGGGTTACGGCGATCGGTGGGGCCGG
321 ATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGG
** * **
5366374 GGGGTGCACGCACATGATGTGCGATGGGTGCTGGAACTTCACCCTTATATTGGCCCCCTATCCCT
385 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
5366439 CATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
450 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
5366504 AGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTTTACACATCGA
515 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
5366569 GTTTTTACCTGAATTTTTTTATGGATGCGAACAAAAATACAAGGACCACATCTACCAAGTTTGGG
580 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
5366634 GCCAAAACTCCTTTCGAAAAAATTTTAACAAATCCTGAACTGCAAAAAGGTTT-GAAAGTCGTGA
645 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCGAAAATCGTGA
* * *
5366698 AAAATCGAACACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
709 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
5366763 TTTACAAGCCATAAAAATGGCAGTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCA
774 TTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCA
* * * *
5366828 CCCTATCGATCCACAGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCCGTCC-
839 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
* *
5366888 GCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATATC-GAGTTCATTCCCAGTCTAAGATCGGA
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
5366952 CCCGACTGAGGGTTGCGACAGTAGGATCTACAGCACGCAGAGGGTGACCCGATCGATCCCCGGCT
65 CCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGG-GACCCGATCGATCCCCGGCT
* * * * *
5367017 TGTGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCAT
129 TGCGCAT-CCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * **
5367082 ACGAAGTTCATTCCCAATCTAGGCATATGGAGTTCATTCCCAGTCTAATATAGGACCGGATAGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGAT-GGACCGAACCGAG
** * * * ** *
5367147 GGTTGTGGCAGCACAT-TCTAGGCTCGGGCATTTGCTGTTGATGCATTTTTCTTCGCTGGGGCAC
256 GGTTACGGCAGCACATGT-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * *
5367211 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCG
320 CATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-
* * * * *
5367276 GGGGGGTGTGCTCACATGATGTGCGGTGGATGCTGGTACTTGGCCCTTATATTGG-GCCCTATGC
383 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5367340 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGGATTTGAGATTTGACAGGTTTGCTGCCA
448 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5367405 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTT
513 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * **
5367470 GAGTTTTTAGCTGAATTTTTTTGTGCA-GGCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTG
578 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * * * *
5367534 GGGCCAAACCTGCGGT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAGATGTTTCGAAAATCAT
643 GGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGT
* *
5367598 GAAAAATAGAAATCGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
707 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * * *
5367663 AATTTACAAGCCATAAAAATGGCATTTACACGCAAAAATAAGAAGATGTACCTAAACCCACCTAC
772 AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTAC
** * * *
5367728 CACCCTATCGATCCACGGCTTGCATATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCG-CCC
837 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
* * ** * *
5367790 GCCTGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
5367855 CAGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCTGGTGGATCCCCGGCTT
66 CAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGATCCCCGGCTT
* * * * *
5367920 GTGCATCCAACCCCTCTGGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATA
130 GCGCATCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
5367985 CGGAGTTGATTCCCAGTCTAAGCATATGGAGTTCATTCCAATCTAAGATCGGACC-AGACCAAGA
194 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGAT-GGACCGA-ACCGAGG
* * * * *
5368049 GTTACGGCAGCCCATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGAGGCACCA
257 GTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
** * * * * *
5368114 TCGTCGGAGCATTGCCGGAGAACTTGACTGACGACATTGGGGTTCCGACGATCGGTGGGGCCGGG
322 TCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGG
*
5368179 GGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
5368244 A-CAAACCTCTAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
5368308 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAG
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
5368373 TTTTTTGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGAG
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
5368438 CCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCCAAACCGTAAAAAGTTT-TAAAATCATGAAA
646 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAA
* * *
5368502 AATAGAAGACGATTCATCTTGCCATGAAACTTCACAG-GAAGGCTTAAGGGACCATTGTATGAAT
711 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
5368566 TTACAAGTCATAAAAATGGCATTGGCATGCATAAATATGAA
775 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAA
5368607 GATCCCTGGC
Statistics
Matches: 4575, Mismatches: 557, Indels: 261
0.85 0.10 0.05
Matches are distributed among these distances:
862 57 0.01
863 2 0.00
866 1 0.00
867 2 0.00
869 1 0.00
872 2 0.00
873 492 0.11
874 135 0.03
875 459 0.10
876 181 0.04
877 192 0.04
878 10 0.00
879 5 0.00
881 1 0.00
882 4 0.00
883 5 0.00
884 1 0.00
886 8 0.00
887 8 0.00
888 167 0.04
889 3 0.00
890 2 0.00
891 7 0.00
892 512 0.11
893 3 0.00
894 2 0.00
896 2 0.00
898 2 0.00
899 1 0.00
900 319 0.07
901 389 0.09
902 899 0.20
903 646 0.14
904 55 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCGGCTTG
CGCATCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATGGACCGAACCGAGGGTTA
CGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCA
Found at i:5365349 original size:26 final size:26
Alignment explanation
Indices: 5365313--5365365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5365303 GTTGACTTAG
*
5365313 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
*
5365339 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
5365365 G
1 G
5365366 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATACCCAGTCTAA
Found at i:5367115 original size:26 final size:26
Alignment explanation
Indices: 5367075--5367128 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
5367065 TGGGTTGACT
5367075 TAGGCATACGAAGTTCATTCCCAATC
1 TAGGCATACGAAGTTCATTCCCAATC
* * *
5367101 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAATC
5367127 TA
1 TA
5367129 ATATAGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCCAATC
Found at i:5368016 original size:26 final size:25
Alignment explanation
Indices: 5367980--5368031 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
5367970 GTTAACTTAG
* *
5367980 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
*
5368006 GCATATGGAGTTCATTCCAATCTAA
1 GCATACGGAGTTCATTCCAATCTAA
5368031 G
1 G
5368032 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:5369597 original size:26 final size:26
Alignment explanation
Indices: 5369567--5369619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5369557 GTTTACTTAG
5369567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5369593 GCATACGGAGTTTATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5369619 G
1 G
5369620 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5369716 original size:11 final size:11
Alignment explanation
Indices: 5369700--5369736 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
5369690 GTCGAGGCAC
5369700 CATCGCCAGAG
1 CATCGCCAGAG
5369711 CATCGCCAGAG
1 CATCGCCAGAG
5369722 CATCGCCAGAG
1 CATCGCCAGAG
5369733 CATC
1 CATC
5369737 ACCGGAGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.27, C:0.38, G:0.24, T:0.11
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:5370529 original size:26 final size:26
Alignment explanation
Indices: 5370493--5370545 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5370483 GTTGACTTAG
5370493 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5370519 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5370545 G
1 G
5370546 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5372150 original size:26 final size:26
Alignment explanation
Indices: 5372114--5372166 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5372104 GTTGGCTTAG
5372114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5372140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5372166 G
1 G
5372167 ATGGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5373886 original size:26 final size:26
Alignment explanation
Indices: 5373850--5373902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5373840 GGTGACTTAG
5373850 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5373876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5373902 G
1 G
5373903 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5375116 original size:876 final size:861
Alignment explanation
Indices: 5373190--5377405 Score: 4217
Period size: 882 Copynumber: 4.8 Consensus size: 861
5373180 GGGGGTGGGA
* * * *
5373190 GGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTTACACCGCATTAAA
1 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5373255 GAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTT
65 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
5373320 TTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCTTCCCAAC
130 TTTCAAATGG-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* ** * **
5373385 AAAAATACAAGGATCACGTCTGTCAAGTTTAGGGCCAAAACTCCTTCTTAAAAAATTTTAAAAAA
194 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* ** * * **
5373450 TTCCGAACCGCCCAAAGTTTTAAAAATCATGAGAAATAGAAAACGAGTCTTCTTAACATGAAACT
259 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
5373515 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGAATTGGCACGTAG
324 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * * * *
5373580 AAATATAAAGATGCGCCTAAACCCACCTACCTCCTTATTGATCCATGACTTGCGCATCCCGTCTC
389 AAATAT--AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * ** *
5373645 TCTAGTCGGC-GTG-G--TGCCCGCCCG--CTCGTTTCATCAATTGGCTTAGGAATACGGAGTTC
452 TCTGGCCGGCAGTGCGCCCGGCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
5373704 ATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTATGGT--AGCAGGATTGGCAGCATGCAGAGG
517 ATTCCCAGTCTAAGATCAGACCGGA-CGAGGG-T-TGCTACAGCAGGATCGACAGCACGCAGAGG
* * * * *
5373767 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTAAGCGCACGCACGCTCA
579 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* *
5373832 TTTCGTGGGGTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
644 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-
** * *
5373897 TCTAAGATCGGATCAGACCGAGGGTCACGGCAGCTCATGCTGGGCTCGGGCATGTGTTGGTGCCG
695 -C------C-G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
5373962 CATTTTTCTTCGCCAGGGCACCA-T--TG---CCGGAGAACCTGACCGGCGGTATTGGGGTTCCG
748 CATTTTTCTTCACCGGGGCACCACTCATGCATCCGGAGAACCTGAACGGCGGCATTGGGGTTCAG
* * * * *
5374021 CCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGATGCT
813 GCGATC-GGGGGGCC-CGGGGGGTGTGCACACATGATGTGCGAGGGGTGCT
* *
5374072 GGTACTTGGCCCCTATATTGGTGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5374137 GAGCATCTGAGATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTA
65 GAGCATTTGAGATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
5374201 TTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGGTGCATTTTTTTGTGCATGCCAA
129 TTTTCAAATG-GCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5374266 CAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAA
193 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
5374331 ATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
258 ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
5374396 TTCACGTGAAGGCTTAAGGGACCATTAG-ATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC
323 TTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
5374460 AGAAATAT-GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTC
387 AGAAATATAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
5374524 TCTGGCCGTCGCAGTGCCCGCCCGGCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACG
452 TCTGGCCG--GCAGTG--CGCCCGGCCGCCCGCCC--TCGTTTCGTCGGTTGGCTTAGGCATACG
*
5374589 GAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCTACAGCAGGATCGTCAGCACGCA
511 GAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCTACAGCAGGATCGACAGCACGCA
* * * * * *
5374654 GAGGGGGACCCGGTCGATCCCCAGCTTGCGCATTCTGCCCCTTTGGCCAGGCTGAGCGCCCGTAT
575 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCAC
* *
5374719 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGA
639 GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
5374784 GGGTTGTGGCACCACATGCTGGGCTTGGGCATGTG-TCGGTTCCGTATTTTTCTTCACCGGGGCA
704 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCA
**
5374848 CCATCGTCATAGCATCACCGGAGAACCTGAACGATGGCATTGGGGTTCAGGCGATCGGGGGGCCC
768 CCA-C-TCAT-GCAT--CCGGAGAACCTGAACGGCGGCATTGGGGTTCAGGCGATCGGGGGGCCC
5374913 GGAGGGGTGTGCACACATGATGTGCGAGGGGTGCT
828 GG-GGGGTGTGCACACATGATGTGCGAGGGGTGCT
*
5374948 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5375013 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
65 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5375078 TTTCAAATAGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAC
130 TTTCAAAT-GGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
***
5375143 AAAAATACAAGGATCACACCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTTAAAAAA
194 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * * *
5375207 TCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
259 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
5375272 TCACATGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAG
324 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
5375337 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG--TC
389 AAATAT--AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
5375400 -C-GGTCGG-TGTAGTGCCC-GCCGCCCG--CTCGTTTCGACGGTTGGTTTAGGCATACGGAGTT
452 TCTGGCCGGCAGT-GCGCCCGGCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** *
5375459 CATTCCCAGTCTAAGATCGGACCAGACCCAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAAGG
516 CATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCTACAGCAGGATCGACAGCACGCAGAGGG
* ** * * * *
5375524 GGACCCGGTCGATCCCCGGCTTGCACATCCAACCCCTCTAGCCGACTGAGCGCCCGCATGCTCGT
580 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
*
5375589 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
645 TTCATGGGTTGAC-T-----TA--G-G--------CA---T-A-C--A--GAGTTCATTCCCAGT
* * * * * * * * * *
5375654 CTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGATTCTGGGCTCAGGCATGTGCTAGTACTGT
684 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
5375719 GTTTTTCTTCACC-GGG--CCAC-CAT-CGT-CGGAGAACCTGACCGGCGGCATTGGGGTTCCA-
749 ATTTTTCTTCACCGGGGCACCACTCATGCATCCGGAGAACCTGAACGGCGGCATTGGGGTT-CAG
* * *
5375777 GCGATCGGAGGGG--CGGGGGGTGTGCGCACATGATGTTCG-GTGGGTGTT
813 GCGATCGG-GGGGCCCGGGGGGTGTGCACACATGATGTGCGAG-GGGTGCT
5375825 GGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5375890 GAGCATTTGAGATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTG-CTGAAATAGGGACACTT
65 GAGCATTTGAGATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
5375953 TTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAA
129 TTTTCAAAT-GGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5376018 CAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAA
193 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
5376083 ATCCCGAACCGCAAAAAG-TTTCAAAATCATGAAAAATAGGAAAATGAGTCATTCTTGCCCATTG
258 ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATA-GAAAACGAGTC-GTCTTG-CCA-TG
*
5376147 AAACTTCACGTGAAGGCTTAAGGGGACCCATTTGTGATGAATTAAC-AGCCAT-AAAATGGCATT
319 AAACTTCACGTGAAGGCTTAA-GGGA-CCA-TTGT-ATGAATTTACAAGCCATAAAAATGGCATT
*
5376210 -GCATGCAACGAAATATGAAGATGTGCCTAAACCCACCTTA-GACCCTA-CGAATCCACGGCTTG
380 GGCATGC-A-GAAATAT--AGATGTGCCTAAACCCACC-TACCACCCTATCG-ATCCACGGCTTG
* * * * * * * *
5376272 TGCATCCCGTCCTCTCTGGTCGGCTA-TACACGCCCGCCCACCTGCCCGCTCGTTTCATCGATTG
439 CGCATCCCGT-CTCTCTGGCCGGC-AGT--GCGCCCGGCCGCCCG-CC-CTCGTTTCGTCGGTTG
* * * * * * * **
5376336 GCTTAGGTATACAGAGTTCATTCACAGTCTAAGATCAGATCGAATCGACGATTG-TGGTAGCAGG
498 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCT-ACAGCAGG
* * * * * * * * *
5376400 ATC-AGTAGCACCCAGAGAGGGACTCAGCCGATCCCCAGCTTACGCATCCCGCCTCTCTGGCCGG
561 ATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
5376464 TTGAGCGCCCGCACGCTCATTTCAT--G-T---TT-----T--A-A---C-TT---AGGC--ATA
625 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * * *
5376506 -CGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGGTTGGGCATGTGCTGGAGCCACATTTTT
690 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * * *** * *
5376570 CTTCGTCGGGGGAGCATCATCGGAAGCAACTCTGTCGGGAGAACCT-AACCGGTTACGTTTGGGT
755 CTTCACCGGGGCACCA-C-TC--ATGC-A-TC---C-GGAGAACCTGAA-CGGCGGCATTGGGGT
* * ** *
5376634 TCTGAC-ATCGGGGGGGTCGGGGGGTAGTGCACACAATGATGTGC-ATTGGTGTGCT
809 TCAGGCGATCGGGGGGCCCGGGGGGT-GTGCACAC-ATGATGTGCGA--GGGGTGCT
* *
5376689 -GTACTTGGCCCTTATATTGGCCCCCTATCACTCATC-AACCTCCAGAACTCACACCCCCTT-AA
1 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5376751 GAGCATTTGAGATTTTACAGGTTTG-TGCCA-TAGCCA-TAAAGTGTCTGAAAATGGGGACACTT
65 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTT
* * * *
5376813 TTTTCAAATGGTCACCAAATCTTGTCCACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
129 TTTTCAAATGG-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * ** *
5376878 AAAAAATACAAGGCTAACT-TCTACCAAGTCTGGGGTGAAAACTCCTTCAGAAAAAAATTTTAAA
193 CAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAATTTTAAA
* * ** * *
5376942 AAATCCCAAACCACAAAAAGTTTCGACAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
256 AAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5377007 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATG
321 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
5377072 CAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
386 CAGAAATA--TAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
5377137 TTCTATGGCCGGCGCAGTGCCTGCCC-GCCTGCCCACCTGCTCGTTTCGTCAGTTAGCTTAGGCA
449 CTCTCTGGCC-G-GCAGTG-C-GCCCGGCC-GCCCGCC--CTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
5377201 TACGGAGTTCATTCCCAGTCTGAGATCAGACTGGATTGAAGGTTGCGAGAGCAGGACCGACAGCA
507 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCTACAGCAGGATCGACAGCA
* * * *
5377266 CGCAAAGGGGGACCC-GACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCC
571 CGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * ** * *
5377330 GCACGCACATTTCAAGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAAGATCGGACCAGA
635 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
5377395 CCGAGGGTTGC
700 CCGAGGGTTGC
5377406 TACAGCAAGA
Statistics
Matches: 2818, Mismatches: 341, Indels: 352
0.80 0.10 0.10
Matches are distributed among these distances:
845 54 0.02
846 5 0.00
848 5 0.00
849 1 0.00
851 3 0.00
852 1 0.00
853 1 0.00
854 19 0.01
855 71 0.03
856 161 0.06
857 11 0.00
858 32 0.01
859 18 0.01
860 126 0.04
861 100 0.04
862 49 0.02
863 40 0.01
864 40 0.01
865 126 0.04
866 62 0.02
867 2 0.00
869 9 0.00
870 8 0.00
871 4 0.00
872 4 0.00
873 2 0.00
874 7 0.00
875 159 0.06
876 371 0.13
877 223 0.08
878 59 0.02
879 96 0.03
880 47 0.02
881 14 0.00
882 373 0.13
883 65 0.02
884 14 0.00
885 2 0.00
886 4 0.00
887 12 0.00
888 9 0.00
889 9 0.00
890 84 0.03
891 126 0.04
892 58 0.02
893 1 0.00
894 1 0.00
895 130 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCAGTGCGCCCGGCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACGAGGGTTGCTACAGCAGGATCGACAGCACGCAGAGGGGGACCC
GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATG
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCACTCATGCATC
CGGAGAACCTGAACGGCGGCATTGGGGTTCAGGCGATCGGGGGGCCCGGGGGGTGTGCACACATG
ATGTGCGAGGGGTGCT
Found at i:5375635 original size:26 final size:26
Alignment explanation
Indices: 5375606--5375658 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5375596 GTTGACTTAG
5375606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5375632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5375658 G
1 G
5375659 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5376063 original size:877 final size:849
Alignment explanation
Indices: 5372266--5377379 Score: 4375
Period size: 845 Copynumber: 5.9 Consensus size: 849
5372256 ATCATCGCCA
** * * * *
5372266 GAGAACCTGACCGACGGCATT-GGGTTCTGACGATCTGGGGGGCCGGGGGGGTGTACGCAAATGA
1 GAGAACCTGACCGGTGGCATTGGGGTTCAG-CGATC-GGGGGGCC-GGGGGGTGTGCACACATGA
* * *
5372330 TGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAAC
63 TGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
5372395 TTACTCCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
127 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTG
* * *
5372460 AAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
191 AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* * * **
5372525 TTTGTGCATGCCAAAAAAAATACAAGGATCACATT-TACCAAGTTTGGGGCCAAAAGTCCTTCTG
256 TTTGTGCATGCCAACAAAAATACAAGGAT--CATTCTACCAAGGTTGGGG-CAAAACTCCTTCCA
* * ** *
5372589 GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
318 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAATCATGAAAAATAGAAAATGAGTC
* *
5372654 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAAAAGCCATAAAAA
382 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5372719 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTATCACTCTATCGATCCACGAC
447 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
5372784 TTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCTGCCTGCCCGCCCGCCCGCTAGTTTCGTCGG
512 TTGCGCATCCCGT-TCTC-GGTC-G-GT-GT-AC-G-CTGCCCGCCTGCCCGCTCGTTTCGACGG
* ** ** * *
5372849 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGCGGTAGCA
569 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGATCGAAGGTTGCGG-AGCA
* * * * *
5372914 GGATCGACAACACGCAGAGGGGGACTCGACCGATCCCCGGCTT-GGCCATCCCGCCCCTCCGGCC
632 GGATCGACAGCACGCAGAAGGGGACCCGA-CGATCCCCGGCTTACG-CATCCCGCCCCTCTGGCC
* * * ** *
5372978 GGCTGTGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
695 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC---
* * ** * * * * * * ** *
5373043 GATCAGACCAGACCGAGGGTTACGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCATTTTT
757 GA-CCGAGCATTCC-A--G-TA--G---CACAGGCCGGGGTTGGGCATGTGCTGGAGCCACATTG
* * * * ** **
5373108 TTCTTCGTCGGGGCACCATCGTCGGAGC-A-TC-ACCG
812 TGCTTAGTCGGGGGAGCATCACCGGAGCAACTCTGTCG
** * *
5373143 GAGAACCTGACCGACGGTATTGGGGTTCCGGCGAT--------CGGGGGGTG-G-------GA--
1 GAGAACCTGACCGGTGGCATTGGGGTT-CAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATG
* *
5373190 -------------GGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTT
65 TGCGGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5373242 ACACCGCATTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAA
* * * *
5373307 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTT
193 ATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * * * ** * * **
5373372 TTTGCTTCCCAACAAAAATACAAGGATCACGTCTGTCAAGTTTAGGGCCAAAACTCCTTCTTAAA
258 TGTGCATGCCAACAAAAATACAAGGATCA-TTCTACCAAGGTT-GGGGCAAAACTCCTTCCAAAA
* ** * * * *
5373437 AAATTTTAAAAAATTCCGAACCGCCCAAAGTTTTAAAAATCATGAGAAATAGAAAACGAGTCTTC
321 AAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAATCATGAAAAATAGAAAATGAGTCGTC
** *
5373502 TTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGG
385 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * * * * *
5373567 AATTGGCACGTAGAAATATAAAGATGCGCCTAAACCCACCTACCTCCTTATTGATCCATGACTTG
450 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * **
5373632 CGCATCCCGTCTCTCTAGTCGGCGT--GGTG--C-CC-GCCCGCTCGTTTC-ATCAATTGGCTTA
515 CGCATCCCGT-TCTC-GGTCGGTGTACGCTGCCCGCCTGCCCGCTCGTTTCGA-CGGTTGGCTTA
* * * * ** * *
5373690 GGAATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTATGGTAGCAGGATTGGC
577 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGATCGAAGGTTGCGG-AGCAGGATCGAC
* * * * * *
5373755 AGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTAAGCG
640 AGCACGCAGAAGGGGACCCGA-CGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
5373820 CACGCACGCTCATTTCGTGGGGTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
704 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC---G---ACCGA
* ** * *
5373885 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTCACGGCAGCTCATGCTGG-GCTCGGGCA
763 G--CATT-CCAG--T-AG--C--A-CAGGCCG-GGGT-TGGGCA--T-GTGCTGGAGC-C--ACA
* ** * * * * * *
5373949 -TGTG-TTGGT-GCCGCATTTTTCTTCGCCAGG-GCACCAT-TGCCG
809 TTGTGCTTAGTCGGGGGA----GCATCACC-GGAGCAAC-TCTGTCG
* * * *
5373991 GAGAACCTGACCGGCGGTATTGGGGTTCCGCCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATG
1 GAGAACCTGACCGGTGGCATTGGGGTTCAG-CGATC-GGGGGGCC--GGGGGGTGTGCACACATG
* * * *
5374056 ATGTGCGATGGATGCTGGTACTTGGCCCCTATATTGGTGCCCTATCCCTCATCAAACCTCGAGAA
62 ATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
*
5374121 CTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT
126 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCT
* ** * *
5374186 GAAATGGGGACACTATTTTCAAAT-GATCACAAAATCTTGTACACTTCAAGTTTTTAGGTGCATT
190 GAAATGGGGACACTTTTTTCAAATAG-TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
* * *
5374250 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACGCCTTCC
254 TTTTTGTGCATGCCAACAAAAATACAAGGATCAT-TCTACCAAGGTTGGGG-CAAAACTCCTTCC
* * * * *
5374315 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
317 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAATCATGAAAAATAGAAAATGAGT
5374380 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAG-ATGAATTTACAAGCCATAAA
381 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAA
* *
5374444 AATGGCATTGGCAAGCAGAAATAT---GATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
445 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * ** *
5374506 GCTTACGCATCCCGTCTCTCTGGCCGTCGCAGTGCCCGCCCGGCCGCCCGCCCATTCGTTTCGTC
510 GCTTGCGCATCCCGT-TCTC--G--GTCG--GTGTACG-CTGCCCGCCTGCCCGCTCGTTTCGAC
* **
5374571 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCTACA
567 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GATC-GAAGGTTGC-GGA
* * * * * * * *
5374635 GCAGGATCGTCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATTCTGCCCCTTTGG
629 GCAGGATCGACAGCACGCAGAAGGGGACCC-GACGATCCCCGGCTTACGCATCCCGCCCCTCTGG
* * * *
5374700 CCAGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATC
693 CC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CC---C
* *** * * * * * ** **
5374765 TAAGATCGGACCGGACCGAGGGTTGTGGCACCACATGCTGGGCTTGGGCATGTG-TCGGTTCCGT
753 --AG-TC-GACC-GAGC-A---TTCCAGTAGCACAGGCCGGGGTTGGGCATGTGCT-GGAGCCAC
* * * * * ** ** **
5374829 ATTTTTCTTCA-CCGGGGCACCATCGTCATAGC-A-TC-ACCG
808 ATTGTGCTT-AGTCGGGGGAGCATCACCGGAGCAACTCTGTCG
* *
5374868 GAGAACCTGAACGATGGCATTGGGGTTCAGGCGATCGGGGGGCCCGGAGGGGTGTGCACACATGA
1 GAGAACCTGACCGGTGGCATTGGGGTTCA-GCGATCGGGGGG-CCGG-GGGGTGTGCACACATGA
*
5374933 TGTGCGAG-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACATCGAGAA
63 TGTGCG-GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAA
*
5374997 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCT
126 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCT
* *
5375062 GAAATGGGGACACTTTTTTCAAATAGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
190 GAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
* ** *
5375127 TTTTGGGCATGCCAACAAAAATACAAGGATCACACCTACCAAGTTTGGGGCAAAACTCCTTCCAA
255 TTTTGTGCATGCCAACAAAAATACAAGGATCA-TTCTACCAAGGTTGGGGCAAAACTCCTTCCAA
* * * * *
5375192 AAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
319 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAATCATGAAAAATAGAAAATGAGTCG
* *
5375257 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAAT
383 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5375322 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCT
448 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
5375387 TGCGCATCCCG-TC-CGGTCGGTGTA-G-TGCCCGCC-GCCCGCTCGTTTCGACGGTTGGTTTAG
513 TGCGCATCCCGTTCTCGGTCGGTGTACGCTGCCCGCCTGCCCGCTCGTTTCGACGGTTGGCTTAG
* * * *
5375447 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCCAGGGTTGCGGCAGCAGGATCGACA
578 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAAGGTTGCGG-AGCAGGATCGACA
* * * ** * *
5375512 GCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCACATCCAACCCCTCTAGCCGACTGAGCGC
641 GCACGCAGAAGGGGACCC-GACGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5375577 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
705 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC---G---ACCGAG
* * *
5375642 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGATTCTGG-GCTCAGGCA-
764 --CATT-CCAG--T-AG--C--ACAGG-CCG-GGGTTG-GGCA-T-G-TGCTGGAGC-CA--CAT
***** * *
5375705 TGTGC-TAGTACTGTGTTTTTCTTCACCGG-GCCAC-CATCGTCG
810 TGTGCTTAGT-C-G-GGGGAGCATCACCGGAGCAACTC-T-GTCG
* *
5375747 GAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGAGGGG-CGGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGGTGGCATTGGGGTT-CAGCGATCGG-GGGGCCGGGGGGTGTGCACACATGAT
* *
5375811 GTTCGGTGGGTGTTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACT
64 GTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACT
5375876 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG-CTGA
128 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGA
* * *
5375940 AATAGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATT
192 AATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
5376005 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCAAAAACTCCTTCCAAA
257 TTGTGCATGCCAACAAAAATACAAGGATCAT-TCTACCAAGGTTGGGGC-AAAACTCCTTCCAAA
*
5376070 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCATGAAAAATAGGAAAATGAGTCAT
320 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCATGAAAAATA-GAAAATGAGTC-G
*
5376135 TCTTGCCCATTGAAACTTCACGTGAAGGCTTAAGGGGACCCATTTGTGATGAATTAAC-AGCCAT
383 TCTTG-CCA-TGAAACTTCACGTGAAGGCTTAA-GGGA-CCA-TTGT-ATGAATTTACAAGCCAT
*
5376199 -AAAATGGCATT-GCATGCAACGAAATATGAAGATGTGCCTAAACCCACCTTA-GACCCTA-CGA
442 AAAAATGGCATTGGCATGC-A-GAAATATGAAGATGTGCCTAAACCCACC-TACCACCCTATCG-
* * * *
5376260 ATCCACGGCTTGTGCATCCCGTCCTCTCTGGTCGGCTATACACGCCCGCCCACCTGCCCGCTCGT
503 ATCCACGGCTTGCGCATCCCGT--TCTC-GGTCGG-TGT--ACG-CTGCCCGCCTGCCCGCTCGT
* * * * * * *
5376325 TTC-ATCGATTGGCTTAGGTATACAGAGTTCATTCACAGTCTAAGATCAGATCGAATCGACGATT
561 TTCGA-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ATCGAAGGTT
* * * * * *
5376389 GTGGTAGCAGGATC-AGTAGCACCCAG-AGAGGGACTCAGCCGATCCCCAGCTTACGCATCCCGC
624 GCGG-AGCAGGATCGA-CAGCACGCAGAAG-GGGAC-CCGACGATCCCCGGCTTACGCATCCCGC
* * ** *
5376452 CTCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGTTTTAACTTAGGCATAC-G-G---A--
685 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
** * * * * *
5376510 -CC-G--GACCGAGGGTTGCAGTAGCACATGCTGGGGTTGGGCATGTGCTGGAGCCACATTTTTC
750 CCCAGTCGACCGAGCATTCCAGTAGCACAGGCCGGGGTTGGGCATGTGCTGGAGCCACATTGTGC
* *
5376571 TTCGTCGGGGGAGCATCATCGGAAGCAACTCTGTCGG
815 TTAGTCGGGGGAGCATCACCGG-AGCAACTCTGTC-G
* ** * * * *
5376608 GAGAACCTAACCGGTTACGTTTGGGTTCTGAC-ATCGGGGGGGTCGGGGGGTAGTGCACACAATG
1 GAGAACCTGACCGGTGGCATTGGGGTTCAG-CGATC-GGGGGGCCGGGGGGT-GTGCACAC-ATG
** * *
5376672 ATGTGCATTGGTGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCACTCATC-AACCTCCAGA
62 ATGTGCGGTGG-GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
5376735 ACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTG-TGCCA-TAGCCA-TAAAGTGTC
125 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTC
* * *
5376796 TGAAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTCCACTTTGAGTTTTTAGCTGAAT
189 TG-AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
* * * * *
5376861 TTTTTTTTGCATGCCAAAAAAAATACAAGGCTAACTTCTACCAA-GTCTGGGGTGAAAACTCCTT
253 TTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TTCTACCAAGGT-TGGGG-CAAAACTCCTT
* * * *
5376925 CAGAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCGACAATCATGAAAAATAGAAAATG
315 C-CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAATCATGAAAAATAGAAAATG
*
5376990 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATA
378 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5377055 AAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
443 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5377120 CGGCTTGCGCATCCCGTTTCTATGGCCGGCGCAGTGCCTGCCCGCCTGCCCACCTGCTCGTTTCG
508 CGGCTTGCGCATCCCG-TTCT-CGGTCGGTGTA-CG-CTGCCCGCCTG--C-CC-GCTCGTTTCG
* * * * * *
5377185 TCAGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACTGGATTGAAGGTTGCGAG
565 ACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGATCGAAGGTTGCG-G
*
5377250 AGCAGGACCGACAGCACGCA-AAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCT
628 AGCAGGATCGACAGCACGCAGAA-GGGGACCCGAC-GATCCCCGGCTTACGCATCCCGCCCCTCT
* * * *
5377314 GGTCGGCTGAGCGCCCGCACGCACATTTCAAGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
691 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
5377379 C
756 C
5377380 AAAGATCGGA
Statistics
Matches: 3515, Mismatches: 473, Indels: 508
0.78 0.11 0.11
Matches are distributed among these distances:
833 179 0.05
834 5 0.00
835 6 0.00
836 3 0.00
837 10 0.00
838 6 0.00
839 3 0.00
841 7 0.00
842 13 0.00
843 5 0.00
844 2 0.00
845 406 0.12
846 8 0.00
847 2 0.00
848 34 0.01
851 1 0.00
852 11 0.00
854 20 0.01
855 67 0.02
856 163 0.05
857 18 0.01
858 33 0.01
859 33 0.01
860 140 0.04
861 120 0.03
862 59 0.02
863 50 0.01
864 60 0.02
865 131 0.04
866 13 0.00
867 7 0.00
868 14 0.00
869 9 0.00
870 4 0.00
871 5 0.00
872 5 0.00
873 7 0.00
874 9 0.00
875 164 0.05
876 375 0.11
877 244 0.07
878 75 0.02
879 91 0.03
880 35 0.01
881 17 0.00
882 371 0.11
883 71 0.02
884 18 0.01
886 8 0.00
887 7 0.00
888 10 0.00
889 4 0.00
890 5 0.00
891 122 0.03
892 49 0.01
893 5 0.00
894 15 0.00
895 151 0.04
896 3 0.00
897 3 0.00
898 2 0.00
899 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (849 bp):
GAGAACCTGACCGGTGGCATTGGGGTTCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGT
GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATTCTACCAAGGTTGGGGCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTTCTCGGTCGGTGTACGCTGCCCGCCTGCCCGCTCGTTTCGACGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGATCGAAGGTTGCGGAGCAGGATCGACAGCACGCAGAA
GGGGACCCGACGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGACCGAGCATTCCAGTAGCACAGG
CCGGGGTTGGGCATGTGCTGGAGCCACATTGTGCTTAGTCGGGGGAGCATCACCGGAGCAACTCT
GTCG
Found at i:5377482 original size:159 final size:159
Alignment explanation
Indices: 5377193--5377546 Score: 447
Period size: 159 Copynumber: 2.2 Consensus size: 159
5377183 CGTCAGTTAG
* * ** ** * *
5377193 CTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACTGGATTGAAGGTTGCGAGAGCAGGAC
1 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAAGAC
* * * * * *
5377258 CGACAGCACGCAAAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTG
66 CGACAGCACACAAAGGGGGACCCGACCGATCCCCGCCTTACGCATCCCACCCCTCTGGCCAGCTG
5377323 AGCGCCCGCACGCACATTTCAAGGGTTGA
131 AGCGCCCGCACGCACATTTCAAGGGTTGA
* * * * *
5377352 CTTAGGCATATGGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCTACAGCAAGAT
1 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAAGAC
* * * **
5377417 CGGCAGCACACAGAGGGGGACCTGACCGATCCCCGCCTTGTGCATCCCACCCCTCTGGCCAGCTG
66 CGACAGCACACAAAGGGGGACCCGACCGATCCCCGCCTTACGCATCCCACCCCTCTGGCCAGCTG
* * **
5377482 AGCGCCCGCACGCTCGTTTCGTGGGTTGA
131 AGCGCCCGCACGCACATTTCAAGGGTTGA
*
5377511 CTTAGGCATATGGAGTTCATTACCAGTCTAAGATCA
1 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
5377547 CCCCGATTCG
Statistics
Matches: 164, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
159 164 1.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAAGAC
CGACAGCACACAAAGGGGGACCCGACCGATCCCCGCCTTACGCATCCCACCCCTCTGGCCAGCTG
AGCGCCCGCACGCACATTTCAAGGGTTGA
Found at i:5378474 original size:159 final size:159
Alignment explanation
Indices: 5378197--5378542 Score: 471
Period size: 159 Copynumber: 2.2 Consensus size: 159
5378187 CATCGATTAG
* * * * * **
5378197 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAAGGTTGCAAGAGCAAGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAAGGTTGCAAGAGCAAGAC
* * *
5378262 CGACAGCACGCAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATTCCACCCCTCTGGCTGGCTG
66 CGACAGCACACAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATTCCACCCCTCTGGCCGACTG
*
5378327 AGCGCCCGCACGCTCGTTTCGTGGGTTGA
131 AACGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
5378356 CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTTGCTATAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAAGGTTGCAAGAGCAAGAC
* * * * *
5378421 CGGCAGCACATAGAGGGGGACCTGA-TCGATCCCCGGCTTGTGCA-TCCTGCCCCTCTGGCCGAC
66 CGACAGCACACAGAGGGGGACCTGACT-GATCCCCAGCTTGCGCATTCC-ACCCCTCTGGCCGAC
*
5378484 TGAACGCCCGCACGCTCGTTTTGTGGGTTGA
129 TGAACGCCCGCACGCTCGTTTCGTGGGTTGA
5378515 CTTAGGCATACGGAGTTCATTCCCAGTC
1 CTTAGGCATACGGAGTTCATTCCCAGTC
5378543 TAAGCATACG
Statistics
Matches: 164, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
158 4 0.02
159 160 0.98
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAAGGTTGCAAGAGCAAGAC
CGACAGCACACAGAGGGGGACCTGACTGATCCCCAGCTTGCGCATTCCACCCCTCTGGCCGACTG
AACGCCCGCACGCTCGTTTCGTGGGTTGA
Found at i:5378556 original size:26 final size:26
Alignment explanation
Indices: 5378520--5378598 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5378510 GTTGACTTAG
5378520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5378546 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5378572 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5378598 G
1 G
5378599 ATCAGACTAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5379462 original size:26 final size:26
Alignment explanation
Indices: 5379433--5379485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5379423 GTTGACTTAG
*
5379433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
5379459 GCATACGGAGTTCATTCACAGTTTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5379485 G
1 G
5379486 AATGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5380106 original size:898 final size:887
Alignment explanation
Indices: 5378546--5381117 Score: 3324
Period size: 895 Copynumber: 2.9 Consensus size: 887
5378536 CCCAGTCTAA
* * * *
5378546 GCATACGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
*
5378611 CGAGGGTTACGGTAGCACATGGTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAAGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAAGG
* * * * * *
5378676 CACCATCACCGGAG-AAC-CT---G-ACC-G--GAGGCATTAGGGTTCCAATGATC-AGGGGCCG
131 CACCATCACCGGAGCATCGCTGGAGAACCTGACGCGGCATTGGGGTTCCGACGATCGGGGGGCC-
** * * * *
5378731 GGGGGTGTGTGCGCACATGATGTGTGATGGCTACCGGTACTTGGCCCTTATATTCGCCCCCTATC
195 GGGGG-GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATC
*
5378796 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
*
5378861 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5378926 CGAGTTTTTAGTTGAATTTTTTTGGGCATGCCTACAAAAATACAAGGATCACGTCTTCCAAGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCA-CCCAACAAAAATACAAGGATCACGTC-T---AGTTT
**
5378991 GGGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTGGAAAATCGT
449 GGGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* *
5379056 GAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
514 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * ** * * **
5379121 AAGTT--ATG--ATATATAT-TTATTGGCAAGCAGAAATATGAA-ATGTATCTATATATCCACCT
579 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA-A-ATCCACCT
* *
5379180 ACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTTTGGGCCGACGTTAGTGCCCGCTTGCC
642 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT-GGCCGGCG-TAGTG-CC-C--G-C
* * *
5379244 CCACACCGCCGCTCGTTTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGAATC
700 CCGC-CCGCCGCTCGTTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * *
5379309 AGACCGAGGGTTACGGCAGTAGGATC-GACAACACGCAGAGGGGGACCCGACCGATCCTTGGCTT
764 AGACTGAGGGTTACGGCAGCAGGATCAG-CAACACACAGAGGGGGACCCGACCGATCCCTGGCTT
* * ** **
5379373 ATGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGCGGGTTGACTTAG
828 ACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTAATTTCGCGGGTTGACTTAG
* * *
5379433 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTTTAAGAAT-GGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACTGGA
* *
5379497 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAG
65 CCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAAG
*
5379562 GCTCCATCACCGGAGCATCGCTGGAGAACCTGACTAGCGGCATTGGGGTTCCGACGATCGGGGGG
130 GCACCATCACCGGAGCATCGCTGGAGAACCTGAC--GCGGCATTGGGGTTCCGACGATC-GGGGG
* * *
5379627 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTA
192 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTA
* *
5379692 TCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5379757 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCA-AAATATCTTGTACA
322 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA-ATCTTGTACA
* *
5379821 CTTCGAGTTTTTAGCTGAATTTGTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACTTTG
386 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAC-CCAACAAAAATACAAGGATCACGTCTAGTTTG
* * * * * * *
5379886 GGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCAAATCG-AAAAATGTTTCAAAAATCAT
450 GGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-GTTTCAAAAATCGT
*
5379950 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATG
514 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5380015 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTAC
579 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAATCCACCTAC
* * * * * * *
5380080 CACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGAGCCAGCCCGCCTGCC
644 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
*
5380145 TGCTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACT
709 -GCTCG-TT--TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACT
* * * * * ** *
5380209 GAGGGTTGCAGCAGCAGGATCAGCAGCACACAGCGGGGGACTCGGTCGATCCCTGGCTTGCGCAT
769 GAGGGTTACGGCAGCAGGATCAGCAACACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCAT
* ** *
5380274 CCCGCCCCTTTGGCCGGCTGAGTGCCCGCACACTAATTTCGTGGGTTGACTTAG
834 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTAATTTCGCGGGTTGACTTAG
* * * ** * * *
5380328 GCATACTGAGTTCATTCCCAATCTAAGCGTATTGAGTTCATTCCCAATCGAAGATCGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * ** * * * **
5380393 CGAGGGTTGCGGTAGCACATGCTGGGCTCGTGCATGTGCTGGCACCACATTTTTCTTTTGTCGGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCAAG
** * * ** *
5380458 GCACCATCGTCGGAGCGTCGCCGGAGAACCTGACCGGCGGCATTGCAGTTCCGACGATCGGCGGG
130 GCACCATCACCGGAGCATCGCTGGAGAACCTGA-C-GCGGCATTGGGGTTCCGACGATCGGGGGG
* * ** * *
5380523 CCGGCGGGGTGTGCGCACATGATGTGCCATTGGTGCTGGTACTTCACCTTTATATTAACCCCCTA
193 CCGG-GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTA
* *
5380588 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAGTTGA-ATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5380652 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
5380717 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAA-AGAAAATACAAGGATCACCTACAATGTT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-CCCAACA-AAAATACAAGGATCACGT-CTA-GTT
* ** *
5380781 TGGGGCCAAAACTCGTGCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
448 TGGGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
5380846 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
513 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ***
5380911 GAATTTACAGGCCATAAAAATGGCATCATCATGTAGAAATATGAAGATGTGCCTAAATCCACCTA
578 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAATCCACCTA
*
5380976 CCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
643 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
5381041 TCGTTTCG--TCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACTGA
708 -CG-CTCGTTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGA
5381104 GGGTTACGGCAGCA
771 GGGTTACGGCAGCA
5381118 CATGCTGGGC
Statistics
Matches: 1468, Mismatches: 174, Indels: 80
0.85 0.10 0.05
Matches are distributed among these distances:
887 130 0.09
888 4 0.00
889 2 0.00
891 4 0.00
892 10 0.01
893 74 0.05
894 125 0.09
895 378 0.26
896 159 0.11
897 241 0.16
898 299 0.20
899 29 0.02
900 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAAGG
CACCATCACCGGAGCATCGCTGGAGAACCTGACGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCACCCAACAAAAATACAAGGATCACGTCTAGTTTGGGGCCA
AAACTCATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTT
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTACGGC
AGCAGGATCAGCAACACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTG
GCCGGCTGAGCACCCGCACACTAATTTCGCGGGTTGACTTAG
Done.