Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 47 of 120
Found at i:5381728 original size:713 final size:708
Alignment explanation
Indices: 5380361--5381792 Score: 2181
Period size: 713 Copynumber: 2.0 Consensus size: 708
5380351 TAAGCGTATT
** * * *
5380361 GAGTTCATTCCCAATCGAAGATCGGACTGGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGTGC
1 GAGTTCATTCCCAATCGAAGATCGGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
* * * * **
5380426 ATGTGCTGGCACCACATTTTTCTTTTGTCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCTGA
66 ATGTGCTGGCACCACATTTTTCTTTCGCCGGGGCACCATCGCCGGAGCATCGCCAAAGAACCTGA
*
5380491 CCGGCGGCATTGCAGTTCCGACGATCGGCGGGCCGGCGGGGTGTGCGCACATGATGTGCCATTGG
131 CCGGCGGCATTGCAGTTCCGACGATCGGCGGGCCGGCGGGGTGTGCGCACATGATGTGCCATGGG
* * **
5380556 TGCTGGTACTTCACCTTTATATTAACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
196 TGCTGGAACTTCACCCTTATATTAACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
5380621 TAAAGAGCAGTTGAATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
261 TAAAGAGCAGTTGAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
*
5380686 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCC
326 TTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCC
*
5380751 AAAGAAAATACAAGGATCACCTACAATGTTTGGGGCCAAAACTCGTGCCAAAAAAATTTTAAAAA
391 AAAGAAAATACAAGGATCACCTACAATGTTTGGAGCCAAAACTCGTGCCAAAAAAATTTTAAAAA
* *
5380816 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
456 ATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
5380881 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATCATCATGTA
521 TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCAGCATGCA
* *
5380946 GAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCT
586 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGCCT
* * *
5381011 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
651 CTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACA
* * *
5381069 GAGTTCATTGCCAGTCTAAGATCGGACCAGA-CTGAGGGTTACGGCAGCACATGCTGGGCTCGAG
1 GAGTTCATTCCCAATCGAAGATCGGACCAGATC-GAGGGTTACGGCAGCACATGCTGGGCTCGAG
** *
5381133 CATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCGCCGGAGCATCGCCAAAGAACCTG
65 CATGTGCTGGCACCACATTTTTCTTTCGCCGGGGCACCATCGCCGGAGCATCGCCAAAGAACCTG
* ** * * * *
5381197 ACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCTCACATGATGTGCGATG
130 ACCGGCGGCATTGCAGTTCCGACGATC-GGCGGGCCGGCGGGGTGTGCGCACATGATGTGCCATG
** ** * * *
5381261 GGTGCTGGAACTTGGCCCTTATATTGGCTCCCTATCCCTCATTAGACCTCAAGAACTCACACCCC
194 GGTGCTGGAACTTCACCCTTATATTAACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
5381326 CTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
259 CTTAAAGAGCAGTTGA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
5381391 CACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTTGC
323 CACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGC
* * *
5381456 ATCCCAAAGAAAATACAAGGATCACCTCTACCAA-GTTTGGAGCCAAAACGT-TTTCTGAAAAAA
386 ATCCCAAAGAAAATACAAGGATCA-C-CTA-CAATGTTTGGAGCCAAAAC-TCGTGC-CAAAAAA
5381519 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
446 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5381584 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5381649 TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
576 TCAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
**
5381714 CATCCTTTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
641 CATCCTGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
5381779 ACA
706 ACA
5381782 GAGTTCATTCC
1 GAGTTCATTCC
5381793 TAGTGTCAAA
Statistics
Matches: 651, Mismatches: 63, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
707 150 0.23
708 180 0.28
710 34 0.05
711 1 0.00
712 19 0.03
713 267 0.41
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
GAGTTCATTCCCAATCGAAGATCGGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
ATGTGCTGGCACCACATTTTTCTTTCGCCGGGGCACCATCGCCGGAGCATCGCCAAAGAACCTGA
CCGGCGGCATTGCAGTTCCGACGATCGGCGGGCCGGCGGGGTGTGCGCACATGATGTGCCATGGG
TGCTGGAACTTCACCCTTATATTAACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCAGTTGAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCC
AAAGAAAATACAAGGATCACCTACAATGTTTGGAGCCAAAACTCGTGCCAAAAAAATTTTAAAAA
ATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCAGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGCCT
CTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACA
Found at i:5382876 original size:26 final size:26
Alignment explanation
Indices: 5382840--5382898 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
5382830 GTTAACTTAG
5382840 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5382866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5382892 -CAT-CGGA
1 GCATACGGA
5382899 TCGAAACGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5383344 original size:896 final size:893
Alignment explanation
Indices: 5381062--5383849 Score: 3751
Period size: 896 Copynumber: 3.1 Consensus size: 893
5381052 GTTGGCTTAG
* * *
5381062 GCATACGGAGTTCATTGCCAGTCTAAGATCGGA-CCAGACTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAAC-GAGGGTTACGGCAGCACATGCTGG
* * **
5381126 GCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAAA
65 GCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * *
5381190 GAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCTCACATGATGT
129 GAACCTGACCGGCGGCATTAGGGTTTCGGAGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
5381255 GCGATGGGTGCTGGAACTTGGCCCTTATATTGGCTCCCTATCCCTCATTAGACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCA
* *
5381320 CACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5381385 TGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTT
* * * * * * *
5381450 TTTTGCATCCCAAAGAAAATACAAGGATCACCTCTACCAAGTTTGGAGCCAAAACGT-TTTCTGA
386 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GACAAAA-ATCCTTCTG-
5381514 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
448 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
5381579 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5381644 TGTCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
578 TGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGC
* * * * *
5381709 TTACGCATCCTTTCTCTCTGGCCGGCATAGTGCCCGCCCG-CCCGCTCGTTTCGTC-GATTGGCT
643 TTGCGCATCCTATCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCCGCTCATTTCGTCAG-TTGGCT
* * * ** * *
5381772 TAGGCATACAGAGTTCATTCCTAGTGTCAA-ATCAAACCTG-ATTAATGGCTGT-GGCAGCAAGA
707 TAGGCATACGGAGTTCATTCCTAGTCT-AAGATCAGACC-GAATCGA-GGGT-TAGGTAGCAAGA
** * * * *
5381834 TC-AGCAGTACGTTAGAGCGGGGACACCGACCGATTCCCCGGCTTGTGCAATCACCGCCCCTCT-
768 TCGA-CAGTAC-ACAGAGAGGGGAC-CAG-TCGA-TCCCCGGCTTGCGC-ATC-CCGCCCCTCTG
* * * *
5381897 GCCGGCTTGAGCGCCCGCACACTCATTTCGTTGGTGTTGACTTAGGCATACAGTGTTCATTCCCA
826 GCCGGC-TGAGCGCCCGCACGCTCGTTTC-TTGG-GTTGACTTAGGCATACGGAGTTCATTCCCA
5381962 GTCTAA
888 GTCTAA
* * * * * *
5381968 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATC-AGACCAAGGGTTGCGGCAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-AACGAGGGTTACGGCAGCACATGCTGG
* * * *
5382032 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGACCATCGTCGGATCATGGCCGGAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
5382097 AACCTGACCGACGGCATTAGGG-TTCTGACGATTGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTAGGGTTTCGGA-GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5382161 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCAC
* *
5382226 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTCGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5382291 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* **
5382356 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGA-CAAAAATCCTTCTGAAAAA
* * * *
5382421 ATTTTAAAAAATC-CCAAGCCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCC
453 ATTTTAAAAAATCTCGAA-CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5382485 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGCC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
*
5382550 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATACACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
* *
5382615 GCATCCTATCTCTCTAG-CGGACGTAGTGCCCGCCTGCCCGCTTGCTCATTTTGTCAGTTGGCTT
647 GCATCCTATCTCTCTAGCCGG-CGTAGTGCCCGCCCGCCC-C--GCTCATTTCGTCAGTTGGCTT
*
5382679 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGGGTTACGGTAGCAGGATCGA
708 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGGGTTA-GGTAGCAAGATCGA
* * * *
5382744 TAGCACACAGA-AGGGGACCTAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
772 CAGTACACAGAGAGGGGACC-AGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
5382808 CGCCCGCACGCTTGTTTCTTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGCCTAA
836 CGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5382866 GCATACGGAGTTCATTCCCAGTCTAACATCGGATCGAAACGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAACGAGGGTTACGGCAGCACATGCTGGG
* ** *
5382931 CTC-GAGCATGTGCTGGTGCCACATTTTTCTTTGTTAGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
5382995 AACCTGACCGGCGGAATTAGGGTTTC-GAGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGT
130 AACCTGACCGGCGGCATTAGGGTTTCGGAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5383059 GATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACA
* * * *
5383124 -CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGGGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5383188 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* *
5383253 GCATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGTGATAAAAATCCTTCTGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GACAAAAATCCTTCTGAAAAAA
*
5383318 TTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * * **
5383383 CCATGAAACTTCAAGTTAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCCTAAAAAAGGAAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCAT
* *
5383448 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGACTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
** * * * *
5383513 ATCCCGTCTCTCTCGCCGGTGTAATGCCTGCCGCCCGCCCACCCGCTGATTTCGTCAGTTGGCTT
649 ATCCTATCTCTCTAGCCGGCGTAGTG-C--CCGCCCG--C-CCCGCTCATTTCGTCAGTTGGCTT
* * *
5383578 AGGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAA-CTGAGGGTTGAGGTAGCAAGATCG
708 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAATC-GAGGGTT-AGGTAGCAAGATCG
* * * *
5383642 ACAGTACGCAGAGAGGGGCCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
771 ACAGTACACAGAGAGGGGACCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
5383707 CGCCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
5383765 GCATACGGAGTTCATTCTAAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAACGAGGGTTACGGCAGCACATGCTGGG
*
5383830 CTCAGGCATGTGCAGGTGCC
66 CTCAGGCATGTGCTGGTGCC
5383850 GCATAGGGGT
Statistics
Matches: 1663, Mismatches: 183, Indels: 79
0.86 0.10 0.04
Matches are distributed among these distances:
896 368 0.22
897 104 0.06
898 164 0.10
899 262 0.16
900 38 0.02
901 16 0.01
902 226 0.14
903 60 0.04
904 9 0.01
905 217 0.13
906 194 0.12
907 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAACGAGGGTTACGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTAGGGTTTCGGAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAATCCTTCTGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCAT
CCTATCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCCGCTCATTTCGTCAGTTGGCTTAGGCATAC
GGAGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGGGTTAGGTAGCAAGATCGACAGTACACA
GAGAGGGGACCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5383768 original size:26 final size:26
Alignment explanation
Indices: 5383739--5383791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5383729 GTTGACTTAG
*
5383739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5383765 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5383791 G
1 G
5383792 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5384614 original size:26 final size:26
Alignment explanation
Indices: 5384585--5384637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5384575 GTTGACTTAG
5384585 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* * *
5384611 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
5384637 G
1 G
5384638 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:5385529 original size:26 final size:26
Alignment explanation
Indices: 5385489--5385541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5385479 GTTGACTTAG
* *
5385489 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5385515 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5385541 G
1 G
5385542 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5385632 original size:904 final size:902
Alignment explanation
Indices: 5383878--5391826 Score: 6821
Period size: 904 Copynumber: 8.7 Consensus size: 902
5383868 TCCGGGGGTC
*
5383878 AGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATC
1 AGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5383943 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5384008 GGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
5384073 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** * *
5384138 GGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CCAAGCCACAAAAAGTTTCAAAAATCA
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CCGTAAAAA-TTTTAAAAATCG
* * *
5384202 TGAAAAATAGAAAACGAGTCATCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
322 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
5384267 GAATTTACAAGACTTAGAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTACACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
5384332 CCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCTA
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
5384396 CCGGCTCGCTCCTTTAATCGGTTGGGTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCCGG-C
517 CCGTC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGGAC
* ** * * * * * *
5384460 CAGATTGAGGGTTGCAGCT-GAAGGATCGACAGCACGCCGAGGGGGACCTGACCGATCCCCGGCT
580 CGGATCAAGGGTTG-TGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
5384524 TGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTTTGTCGGTTGACTTAGGCAT
644 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** *
5384589 ACGGACTTCATTCCCAGTCTAAGCATATGGAGTTCTTTCCCAGTCTAAGATTGGACCGGACCGAG
709 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAG
* * * * ** *
5384654 GGTTACGACAGTACATGCTGGGCTCGGGCATATGCTGGTGCCG-TATTTTTCTTCGCCAGGGCAC
774 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGACATTTTTCTTCATCGGGGCAC
* * * * * * *
5384718 CATTGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTAGGGTTCCGATGAT-TGGGGGGTCG
838 CATCGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
*
5384782 AAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATA
1 -AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
5384847 CCTCAAT-AAACCTCGAGAACTCAGACCCCCTTAAAGAGAATTTGAG-TTTTTCAAAGTTTGCTG
65 CCTC-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTG
*
5384910 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACAC
128 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
5384975 TTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGCATCACGTCTACCAAGT
193 TTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
5385040 TTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAATTTTCAAAAATC
257 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTT-AAAAATC
* *
5385105 GTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTA
321 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5385170 TGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
386 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
5385235 ACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCCCG
451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
5385300 CCCGTCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACC
516 CCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
5385365 GGACCAAGAGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGTCTTG
581 GGATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* ** * *
5385430 CGCATCCCGCCCCTCTAGCAAGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
5385495 TGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTGGACCAATGG
711 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
*
5385560 TTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCAT
776 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCAT
* **
5385625 CGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGAAGATCAAGGGGGCCG
841 CGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
*
5385687 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5385752 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5385817 GTAGCTATTAAAAGTGTCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 GTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5385882 GGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAATTTG
195 CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
5385947 GGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACC-TCAAAAAGTTTTGAAAATCAT
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAA-TTTTAAAAATCGT
* * * *
5386011 GAAAAACAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
5386076 AATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * **
5386141 CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCATC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* *
5386206 CG-CACGCTCGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCG
518 CGTC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * * * *
5386270 GACCAAGGGTTGTGGCAGAAAGATCGGCAACATGCAGAGGGGGACCCGGCTGATCCTCGGCTTGC
582 GATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
5386335 GCATCCTGCCCCTCTGACCGGCTGAGCGCCCCCACGCTCATTTCGTGGGTTGACTTAAGCATACG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
5386400 AAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTGGACCAATGGT
712 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
*
5386465 TGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCATC
777 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCATC
* **
5386530 GTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGAAGATCAAGGGGGCCG
842 GTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
*
5386591 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5386656 CTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5386721 GTAGCCATTAAAGGGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * * *
5386786 GAGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAATAAAAGGATCATGTCTACCACGTTTT
196 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
5386851 GGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCT-AAAATCGT
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-TTT-TAAAAATCGT
*
5386915 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5386980 AATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATATGCCTTAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5387045 CACTCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* ** *
5387106 CGT----TGGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG
518 CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * *
5387167 ATCAAGGGTTGTGGTAGCAAGATCGGCAGCACGCAGAAGTGGACCCGACCGATCCCCGGCTTACG
583 ATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
5387232 TATCCCACCCCTCTGGTCGGTTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGG
648 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * ** *
5387297 AGTTCATTCATAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
713 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
* * * * * * * ** ** * * *
5387362 ACGATAGCAGGAT-C-GGCAGCTCGCAG-AGGGGGACTCGACCGATCCCCAGCTTGC-GCATC-C
778 GCGACAGCA-CATGCTGG--GCTCG-GGCA-TGTG-CTGGTGCGA----CATTTTTCTTCATCGG
* * * * * * *** * * *
5387422 CGC-CCTTTTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATG-GGTTGA-C-TTAGGCATACGGA
833 GGCACC--AT---C-GTCG-GAGCAT-CA--C-CG---GA-GAACCTGACCGGT-GGCAT-TGGG
*** * ** *
5387483 GTTCATTCCCAGTCTAAGATCGGACCAG
881 GTTC-CGACGA-TCT--G-GGGGGCC-G
* * * * * * *
5387511 ACCGAGGGT-TGCGGTAGCACATGCTG-G-GCTTGG-GCAT-GTGCTGGTGCCGCATTTTTCTTC
1 A--GGGGGTGTGC----GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C----TT-AT-
* * * * * * * ** * **
5387571 ACTGGGGCGCC-AT-CGTCGGAGC-ATCGC-CGGAGAACCTGACCAGCGACATT---G-GGGTTT
51 A-TTGGCCCCCTATCCCTC--ATCAAAC-CTC-GAGAA-CTCA-CA-CCCCCTTAAAGAGCATTT
**** * * *** * * * * * *
5387628 CGGAGATCGGGGGGGCCGGGGGGGTGTGCGTG-CA-T-GATGTGTGATGGGTGCTGGTACT--TG
108 --GAGAT-----TTTAC----AGGTTTGC-TGCCAGTAGCCAT-TAAAGTGT-CT-GAAATGGGG
* * * *** * * * * ** *** ***
5387688 TCCCTTATATTGGCCCCTTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAGAGCATTTG
158 ACACTT-T-TT-TCAAATGGT--CACA--AAATCTT--GTA--CACTTCGAGTTTTTAGC---TG
* ** ** *
5387753 AGATTTTACAGGTT-TGC-TACCAGTAGCCATTA-AA-G-T---GTCTGA--AA---TGGGG---
209 A-ATTTT-----TTGTGCATGCCAACA-AAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCA
* ** * * * * * * * ** ** * *
5387802 ACACTTTTTTC----AAATGGTCATAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTCTTTTG
266 AAACTCCTTCCGAAAAAAT-TTTAAAAAATCTCGAAC-CGTAAAAATTTTA---AAAATC----G
** * * * * ** *** * *
5387863 TGCATGCCAAGAAAAATACAAGGATCACGTC-TACC---AAGTTTGGGGTGAAAACGTCTTACGA
322 TG-A--AAAATAGAAA-ACGA-G-T--CGTCTTGCCATGAAACTTCACGTG--AA-GGCTTAAG-
** ** ** * ** * ** ** * *
5387924 AAAAAATT-TAAAAAATCCCGAA-CCGTAAAAA--GTTTTGAAAATCG-TGAAAAATAGAAAACG
375 GGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTG-GCA-CGCAGAAATAT-G--AA-G
* ** * * ** * * *
5387984 AGTCGTCTTGCCATGAAACTTCACGGGA--AGGCTTAAGGGA-CCATTGTATGAATTTACAAGCC
433 A-T-G---TGCC-T-AAAC-CCAC-CTACCA-CCCT-ATCGATCCA-CG---G--CTTGC--G-C
**** ** *** * *** ** * * * *
5388046 ATAAAAATGGCAT-TGGCACATAGAAATATGAAGATGTGCCTAAACCC-ACC-TACCACAC-TAT
478 AT-CCCGTCTC-TCTGGC-C---GGCGTA-G-TG-CCCGCC--CGCCCGCCCGT-CCGCTCGTTT
*** * * * ** ** * * * * * **
5388107 CGATC-CACGACTT-GCGCATCCCGTCTCTC-TGGCCGGTGT-AG-TGCCCGCCCGCCGCTCGTT
531 C-ATCGGTTGGCTTAG-GCATACGGAGT-TCATTCCCAGTCTAAGAT--CGGACCG--GATC-AA
* * * * *
5388167 CGTTTCATCGGTTGGCTTAGGCATACGG-AGTTCATTCCCTGTCTAAGATTGGACCGGACCGAGG
588 GGGTT-GT-GG-TAGC--AGG-AT-CGGCAG--CA----C-G-C--AGA--GG--GGGACC----
* * *
5388231 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGATCG-ATCCCCGACTTGCGCATCCT
628 ----C-G-A-C-CGAT---C--C-C-C------GG-CTTG--CGCAT-CCCG-C---C-CCT-CT
* ** * * * ** * * *
5388295 GCCCTTCTG-GCCGACTG-AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGACTT
662 GGCCGGCTGAG-CGCCCGCA-CGCTCG---TTTCGTG-----GGTTGACTTAGGCATACGGAGTT
* * * *
5388358 CATTCCCAGTCTAAGCATATGGAGCTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGG
717 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGA
* * * * *
5388423 TAGCACATGCTGGGCTTGGGCATGTACTGGTGCCG-CATTTTTCTTC-GCTGGGGCACCATCGCC
782 CAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGACATTTTTCTTCATC-GGGGCACCATCGTC
** * * * * * *
5388486 GGAGCATCGTCAGAGAACCTGACCGGCGACATTGGGGTACAG-CGATCGGGGGGGCCG
845 GGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
* *
5388543 -GGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCC
1 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5388607 CTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5388672 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
5388737 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** * ** * * ** *
5388802 GGGTGAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCAAACAATAAAAAGTTTTGAAAATCGTG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-TTTTAAAAATCGTG
*
5388867 AAAAATAGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 AAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5388932 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5388997 CACCCTATTGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG------C--C
* * * *
5389062 CGCCCCCCCG-CCTGCTCGTTCCATCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
510 CGCCCGCCCGTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * **
5389126 TCGGACCGGATCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGTGGTGGACCCTGGTCGATCC
574 TCGGACCGGATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCC
** ** * * * **
5389191 CCGGCTTGCGCAT-GGGCCTTTCTGGCCGGTTGAGCGCCCACACGCTCATTTCACGGGTTGACTT
638 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
5389255 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAATCA
703 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CT
* * * *
5389319 GG-TCGAGGGTTGCTG-CAACACATGCCGGGCTCGGGCATGTGCTGGTGCTG-TATTTTTC-TC-
766 GGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GACATTTTTCTTCA
* * * * ** *
5389379 TGCCGAGGCACCATCGCCGAAGAATCACTAGAGAACCTGACCGATGGCATTGGGGTTCCGACGA-
829 T--CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGAT
5389443 -TGGGGGGACCG
892 CTGGGGGG-CCG
* *
5389454 -GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCC
1 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5389518 CTCATCAAACCTCGCA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
66 CTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
5389582 AGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGCCACAAAATCTGGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5389647 CGAGTTTGTAGCTGATTTGTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
5389712 GGGCCCAAAA---C-TCC----------T------T-TC-AA----AAAAATTTTAACAAATCTT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTAA-AAATCGT
5389751 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
5389816 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5389881 CACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGTGTAGTGCCCGCCCGCCCG--
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* ** * * * *
5389944 C-T-CGTTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCTGTCTAAGATTGGACCAG
518 CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* ** * * * * *
5390007 ATCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGGACTCAACCGATCCCCGACTTGCG
583 ATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
5390072 TATCCTGCCCTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGG
648 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** **
5390137 AGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTT
713 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
* * * ** *
5390202 GCCG-CAGCACATGCTAGGCTTGAGCATGTGCTGGTGCGACATTTTTCTTTGTC-GGGTACCATC
778 G-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCATC
* ** *** * * *
5390265 GTCGGACCATCATTGGAGAACCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGG
842 GTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCC-G
* *
5390327 AAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATC
1 -AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5390392 CCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* ** *
5390457 AGTAGCCATTAAAGTATCCAAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5390522 GGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACTAAGTTT
195 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * * *
5390587 TGGGCCAGAAAATACTTCCGACAAAATTTTAAAAAATCCCGAACCGCAAAAAGTGTTAAAAATCA
259 GGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-TTTTAAAAATCG
* * *
5390652 TGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGAGCATTGTAT
322 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
5390717 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAATTTTGAAGATGTACCTAAACCCACCTG
387 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ***
5390782 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTTT
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * * * *
5390847 CCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATTGGACCA
517 CCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
5390912 GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGC
582 GATCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * ** *
5390977 GAATCTCGCCCCTCTGGCCAGCTGAGCGCGTGCACACTCGTTTCGTGGGTTGACTTAGGCATACG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * * *
5391042 GAGTTCATTCCCGGTCTAAGCATTCGGAGTTCATTTCCAATCTATGATCGGA-TCAGACTGAGGG
712 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGG
* * * * * *
5391106 TTGTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCAT
776 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCAT
* * * * *
5391171 CGTCGGAGCATCACCGGAGAACCTGAACGGTGGCATTGGGATTTCGGCGATCGGGGGGGCC-
841 CGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
5391232 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5391297 CTCCTCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGCTTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5391362 GTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
5391427 GAGTTTTTAGCTGAATTTCTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
5391492 GGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-TTTTAAAAATCGTG
* * * *
5391557 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCGCGTGACGGCTTAAGGGACCATTGCATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5391622 ATTTACAAGCC-TCTAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
389 ATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
5391686 CACCTTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCG--
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* *
5391749 C--CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGG
518 CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* *
5391812 ACCGAGGGTTGTGGT
583 ATCAAGGGTTGTGGT
5391827 GGCAAATGCT
Statistics
Matches: 5679, Mismatches: 960, Indels: 816
0.76 0.13 0.11
Matches are distributed among these distances:
871 67 0.01
872 234 0.04
873 11 0.00
874 3 0.00
875 238 0.04
876 11 0.00
878 1 0.00
879 1 0.00
880 3 0.00
884 153 0.03
885 39 0.01
889 2 0.00
890 2 0.00
891 1 0.00
895 2 0.00
896 224 0.04
897 10 0.00
898 5 0.00
899 74 0.01
900 12 0.00
901 3 0.00
902 196 0.03
903 318 0.06
904 2155 0.38
905 105 0.02
906 268 0.05
907 65 0.01
908 3 0.00
910 14 0.00
911 403 0.07
912 10 0.00
913 6 0.00
914 10 0.00
915 2 0.00
916 5 0.00
919 18 0.00
920 4 0.00
921 4 0.00
922 12 0.00
923 8 0.00
924 3 0.00
925 10 0.00
926 2 0.00
927 2 0.00
928 5 0.00
929 6 0.00
930 10 0.00
931 15 0.00
932 8 0.00
933 2 0.00
934 3 0.00
935 1 0.00
936 1 0.00
937 2 0.00
939 3 0.00
940 12 0.00
941 16 0.00
942 25 0.00
943 7 0.00
945 16 0.00
947 6 0.00
948 3 0.00
949 5 0.00
950 1 0.00
951 9 0.00
952 10 0.00
953 15 0.00
954 12 0.00
955 14 0.00
956 26 0.00
957 18 0.00
958 8 0.00
959 5 0.00
960 2 0.00
961 1 0.00
964 4 0.00
965 3 0.00
966 7 0.00
967 11 0.00
968 9 0.00
969 1 0.00
970 3 0.00
971 7 0.00
973 6 0.00
974 11 0.00
975 15 0.00
976 31 0.01
977 10 0.00
978 3 0.00
979 2 0.00
981 3 0.00
982 1 0.00
984 5 0.00
985 8 0.00
986 5 0.00
987 1 0.00
988 8 0.00
989 2 0.00
990 4 0.00
991 4 0.00
992 26 0.00
993 13 0.00
994 16 0.00
995 13 0.00
996 26 0.00
997 19 0.00
998 12 0.00
999 17 0.00
1000 13 0.00
1001 5 0.00
1002 8 0.00
1003 7 0.00
1004 6 0.00
1006 13 0.00
1007 1 0.00
1008 7 0.00
1009 22 0.00
1010 15 0.00
1011 14 0.00
1012 1 0.00
1013 1 0.00
1014 1 0.00
1015 5 0.00
1017 3 0.00
1018 2 0.00
1019 8 0.00
1020 15 0.00
1021 10 0.00
1022 4 0.00
1023 3 0.00
1024 334 0.06
1025 308 0.05
1026 300 0.05
1027 296 0.05
1028 261 0.05
1029 207 0.04
1030 250 0.04
1031 324 0.06
1032 273 0.05
1033 276 0.05
1034 195 0.03
1035 203 0.04
1036 828 0.15
1037 192 0.03
1038 197 0.03
1039 252 0.04
1040 201 0.04
1041 170 0.03
1042 156 0.03
1043 162 0.03
1044 128 0.02
1045 353 0.06
1046 149 0.03
1047 231 0.04
1048 139 0.02
1049 109 0.02
1050 96 0.02
1051 114 0.02
1052 91 0.02
1053 383 0.07
1054 230 0.04
1055 112 0.02
1056 209 0.04
1057 195 0.03
1058 250 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGT
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC
AAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCG
ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCATCGTCG
GAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCTGGGGGGCCG
Found at i:5386433 original size:26 final size:26
Alignment explanation
Indices: 5386390--5386445 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
5386380 TGGGTTGACT
*
5386390 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGCTCATTCCCAGTC
*
5386416 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACGAAGCTCATTCCCAGTC
5386442 TAAG
1 TAAG
5386446 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGCTCATTCCCAGTC
Found at i:5387318 original size:26 final size:26
Alignment explanation
Indices: 5387289--5387341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5387279 GTTGACTTAG
*
5387289 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
5387315 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5387341 G
1 G
5387342 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5387459 original size:185 final size:185
Alignment explanation
Indices: 5387130--5387500 Score: 519
Period size: 185 Copynumber: 2.0 Consensus size: 185
5387120 GTTGGCTTAG
* ** *
5387130 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGGGTTGTGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGATAGCAAGATCGGCA
* * * *
5387195 GCACGCAGAAGTGGACCCGACCGATCCCCGGCTTACGTATCCCACCCCTCTGGTCGGTTGAGCGC
66 GCACGCAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGTTGAGCGC
* * *
5387260 CCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
* * *
5387315 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGATAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AAGGGTTACGATAGCAAGATCGGC
* * * * * * *
5387379 AGCTCGCAGAGGGGGACTCGACCGATCCCCAGCTTGCGCATCCCGCCCTTTTGGCCGGTTGAGCG
65 AGCACGCAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGTTGAGCG
* *
5387444 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
5387500 G
1 G
5387501 ATCGGACCAG
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
184 1 0.01
185 161 0.99
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGATAGCAAGATCGGCA
GCACGCAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGTTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
Found at i:5389286 original size:26 final size:26
Alignment explanation
Indices: 5389257--5389309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5389247 GTTGACTTAG
*
5389257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5389283 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5389309 G
1 G
5389310 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5389488 original size:911 final size:896
Alignment explanation
Indices: 5387474--5391822 Score: 5729
Period size: 911 Copynumber: 4.8 Consensus size: 896
5387464 GTTGACTTAG
* *
5387474 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5387539 CTTGGGCATGTGCTGGTGCCGCATTTTTCTT-CACTGGGGCGCCATCGTCGGAGCATCGCCGGAG
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTGC-C-GAGGCACCATCGTCGGAGCATCACTGGAG
* * **
5387603 AACCTGACC-AGCGACATTGGGGTTTCGGA-GATCGGGGGGGCCGGGGGGGTGTGCGTGCATGAT
129 AACCTGACCGA-CGGCATTGGGG-TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
* * * * * *
5387666 GTGTGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCTTGTCCCTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5387731 CACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5387795 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTCTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* ** * *
5387860 TTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACGT-CTTACGA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTT-CCA
* *
5387924 AAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
448 AAAAAATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
5387988 GTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5388053 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGAC
577 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
5388118 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCGCTCG-T-TCGTTTCATCGGTTG
642 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCGCCCGCTCTCGTTTCATCGGTTG
* *
5388181 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGA
*
5388246 TCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCGACT
771 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCGACT
*
5388311 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5388372 GCATATGGAGCTCATTCCTAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
5388436 GCTTGGGCATGTACTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATC-GTCAGA
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTT-GCCGAGGCACCATCGTCGGAGCATCACT-GGA
* * * *
5388500 GAACCTGACCGGCGACATTGGGGTACAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
5388564 GCGTTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5388629 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5388694 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
* ** *
5388759 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCTAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
*
5388824 AATTTTAAAAAATCCCAAACAATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCAAACCA-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
5388889 TGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5388954 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTG
580 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5389019 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTCCGCCCCCCCGCCTGCTCGTTCC
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCC--CCG----CCCG-CT-CTCGTTTC
* * * * * * *
5389084 ATCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGG
698 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAG
* * * * * ** *
5389149 CAGCAGGATCGGTAGCACGCAGTGGTGGACCCTGGTCGATCCCCGGCTTGCGCAT-GGGCCTTTC
763 CAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GATCGATCCCCGACTTGCGCATCCTGCCCTTC
** * **
5389213 TGGCCGGTTGAGCGCCCACACGCTCATTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
827 TGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
5389278 TCTAA
892 TCTAA
* * * * * * *
5389283 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGGTCGAGGGTTGCTGCAACACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5389348 CTCGGGCATGTGCTGGTGCTGTATTTTTCTCTGCCGAGGCACCATCGCCGAAGAATCACTAGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCT-TGCCGAGGCACCATCGTCGGAGCATCACTGGAGA
* * *
5389413 ACCTGACCGATGGCATTGGGGTTCCGACGAT-GGGGGGACCGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5389477 GATGGGTGCTGGT-TCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCA-AACTCA
195 GATGGGTGCTGGTAT-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCA
*
5389540 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
5389605 TGGGGACACATTTTTCAAATGGCCACAAAATCTGGTACACTTCGAGTTTGTAGCTGATTTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * *
5389670 GTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
*
5389735 AA-TTT------T----AA-C-------------AAATCTTGAAAAATAGAAAACGAGTCGTCTT
452 AATTTTAAAAAATCCCAAACCAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
5389775 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5389840 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCG
582 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
5389905 CATCCCGTCTCTCTGACCGGTGTAGTGCCCG--CCCGCCCGCTCGTTCGTTTTGTCGGTTGGCTT
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCTC--TCGTTTCATCGGTTGGCTT
* * *
5389968 AGGCATACGAAGTTCATTCCCTGTCTAAGATTGGACCAGATCGAGGGTTGCAGCAGCAGGATCGG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGG
* * * * *
5390033 CAGCACGCAGAGAGGGACTCAACCGATCCCCGACTTGCGTATCCTGCCCTTCTGGCCGACTGAGC
775 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCGACTGAGC
* * *
5390098 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTTTAA
840 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * *
5390155 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTGCCGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5390220 CTTGAGCATGTGCTGGTG-CGACATTTTTCTTTGTCG-GGTACCATCGTCGGACCATCATTGGAG
66 CTTGGGCATGTGCTGGTGCCG-CATTTTTC-TTGCCGAGGCACCATCGTCGGAGCATCACTGGAG
* * * *
5390283 AACCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGAAGGGGGTGTGCACACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G--GGGGGTGTGCGCACATGAT
*
5390348 GTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * **
5390413 CACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTATCCAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5390478 AATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * * *
5390543 TTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACTAAGTTTTGGGCCAGAAAATACTTCCGA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAAATCCTTCCAA
* * * * * *
5390608 CAAAATTTTAAAAAATCCCGAACCGCAAAAAGTGTTAAAAATCATGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
5390673 TCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
5390738 GGCATTGGCACACAGAATTTTGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCT
578 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
5390803 TGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTTTCCGCCCGCTCATTTCGTTGGT
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CC--GCC-CGCTCTCGTTTCATCGGT
* **
5390868 TGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAG
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAG
* *
5390933 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGAAT-CTCGCCCCTCTGGCC-
769 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT-GCCCTTCTGGCCG
** * * *
5390996 AGCTGAGCGCGTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
833 A-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
5391061 GCATTCGGAGTTCATTTCCAATCTATGATCGGATCAGACTGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5391126 CTCGGGCATGTGCTGGTGCCACATTTTTCTT-CACCAGGGCACCATCGTCGGAGCATCACCGGAG
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTGC-CGA-GGCACCATCGTCGGAGCATCACTGGAG
* ** * * * *
5391190 AACCTGAACGGTGGCATTGGGATTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5391255 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5391320 ACCCCCATAAAGAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5391385 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTCTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTG
* * *
5391450 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* *
5391515 TTTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
453 ATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
5391580 GCCATGAAACTTCGCGTGACGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATGGC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGC
* * *
5391644 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5391709 GCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCCCG--CTCGTTTCATCGGTTGGCT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGCCCGCTCTCGTTTCATCGGTTGGCT
* * * *
5391772 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
5391823 TGGTGGCAAA
Statistics
Matches: 3030, Mismatches: 333, Indels: 175
0.86 0.09 0.05
Matches are distributed among these distances:
870 1 0.00
871 68 0.02
872 250 0.08
873 2 0.00
874 1 0.00
875 238 0.08
876 19 0.01
877 3 0.00
878 1 0.00
883 1 0.00
884 148 0.05
885 34 0.01
887 2 0.00
888 1 0.00
896 95 0.03
897 245 0.08
898 282 0.09
899 62 0.02
900 3 0.00
901 1 0.00
902 185 0.06
903 218 0.07
904 247 0.08
905 9 0.00
906 259 0.09
907 64 0.02
908 3 0.00
909 1 0.00
910 7 0.00
911 550 0.18
912 30 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCGCATTTTTCTTGCCGAGGCACCATCGTCGGAGCATCACTGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATT
TTAAAAAATCCCAAACCAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCTCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCAC
GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCGACTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5390166 original size:26 final size:26
Alignment explanation
Indices: 5390130--5390181 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5390120 TTGACTTAGC
*
5390130 CATACGGAGTTCATTCCCAGTTTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5390156 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5390182 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5391085 original size:26 final size:26
Alignment explanation
Indices: 5391035--5391085 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
5391025 GTTGACTTAG
**
5391035 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5391061 GCATTCGGAGTTCATTTCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
5391086 TGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5392442 original size:719 final size:716
Alignment explanation
Indices: 5391061--5392554 Score: 2409
Period size: 719 Copynumber: 2.1 Consensus size: 716
5391051 CCCGGTCTAA
* * * * * * * * * *
5391061 GCATTCGGAGTTCATTTCCAATCTATGATCGGATCAGACTGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAATACTAGG
*
5391126 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
**
5391191 ACCTGAACGGTGGCATTGGGATTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGAACGGCAGCATTGGGATTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
5391256 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
5391321 CCCCCATAAAGAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATG
261 CCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATG
*
5391386 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTCTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGT
* * *
5391451 CCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAT
391 CCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
5391516 TTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
456 TTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
* *
5391581 CCATGAAACTTCGCGTGACGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCAT
*
5391646 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGCGC
586 TGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGCGC
*
5391711 ATCCCATCTCTCTGGCCGACGTAATG-C-CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
651 ATCCCATCTCTCTGGCCGACGTAATGCCGCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
5391774 G
716 G
* *
5391775 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGTGGCAAATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAATACTAGG
* * **
5391840 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
5391905 ACCTGACCGGCAGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGAGGGGGGGTGTGCGCACTTGA
131 ACCTGAACGGCAGCATTGGGATTTCGGCGATCGGGGGGGCC---A--GGGGGTGTGCGCACATGA
*
5391970 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** *
5392035 TCATGCCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATG
256 TCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATG
5392100 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTC
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTC
* * * *
5392165 TTTGTGCGTGCCGACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
386 TTTGTCCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
5392230 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCG
5392295 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAAT
*
5392360 GGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCT
581 GGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCT
* * * **
5392425 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCGCTCGCCCGCCCGCTCATTTTGTCGGTT
646 TGCGCATCCCATCTCTCTGGCCGACGTAATGCC-GCCGCCCGCCCGCCCGCTCATTTCATCGGTT
5392490 GGCTTAG
710 GGCTTAG
* *
5392497 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAAGGGTTGTGGTAGCAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCG-AGGGTTGTGGTAGCAA
5392555 GATTGGCAGC
Statistics
Matches: 715, Mismatches: 55, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
714 150 0.21
717 1 0.00
719 477 0.67
720 1 0.00
722 68 0.10
723 18 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAATACTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGAACGGCAGCATTGGGATTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGT
CCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCAT
TGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGCGC
ATCCCATCTCTCTGGCCGACGTAATGCCGCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
G
Found at i:5393481 original size:877 final size:877
Alignment explanation
Indices: 5391745--5399735 Score: 8916
Period size: 877 Copynumber: 9.1 Consensus size: 877
5391735 TGCCCGCCCG
* * * * *
5391745 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
** * * * ** *
5391810 GGACCGAGGGTTGTGGTGGCAAATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCT
66 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * *
5391875 GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTTCGGCGATCGGG
131 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGG
*
5391940 GGGGCCGGGAGGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
196 GGGGCC--GA---GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* ** *
5392005 GCCCCCTATCCCTCATCAACCCTCGAGAACTCATGCCCCCTTAAAGAGAATTTGAGATTTTACAG
256 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
5392070 GTTTGCTACCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
321 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
5392135 TTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCGTGCCGACAAAAATAAAAGGATCACATC
386 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
5392200 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
451 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
5392265 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
516 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
5392330 CCATTGCATGAATTTACAAGCC-TCTAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTA
581 CCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
5392394 AACCCACCTACCACCTTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCT
645 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * *
5392459 G-CCGCTCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
710 GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5392523 GATCAGACTGGACCGAAGGGTTGTGGTAGCAAGATTGGCAGCACGCAGAGGGGTACCC-AGTCGA
775 GATCAGACCGGACC-AAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGA
* * * * * * * *
5392587 TCCCTGGCTTCCGCATCCTGCCCATCCGACCGACTAAGCA
838 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
5392627 CCCGCACGCTTGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * *
5392692 GGACCAAGGGTTACGGTGGCAAATGCTGTGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
66 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * **
5392757 AGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCTGCATTGGGGTTCCGGTGATCGGG
131 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGG
*
5392822 GGGGCCGAGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
196 GGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
5392887 CTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
5392952 CTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTA
326 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
5393017 TAGATT-GTGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACT
391 CA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
5393081 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAA
455 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAA
*
5393146 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAT
520 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
5393211 TGCACGAATTTACAAGCC-TCTAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
585 TGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
*
5393275 CACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
649 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * * *
5393340 GCCCACCCGCCGGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
714 GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
5393405 AGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGAATGCAGAGGGGGACCCGACCGATCCCCG
779 AGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * *
5393470 ACTTGCGCATCCCGCCCATCCGGCCGGCTAAGCA
844 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * *
5393504 CCCGCACGCTTGTTTCGCGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
*
5393569 GGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT---C
66 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
** * * *
5393631 ---G--CCA------GAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGAAGATCGGG
131 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGG
* ** * * *
5393685 GGGG-CGAGGGGTGTGTGTGCATGATGTACGATGGTTGCTGGTACTTGGCCCTTATATTGGTCCC
196 GGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
5393749 CTATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCCTTTTAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
5393814 CTACCAGTAGCCGTTAAAGTGTCTAAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTA
326 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * ** * *
5393879 CACTACGAGTTTTTAGCTGAAGTTTTTTGTGCATGCTAACAAATGTTCAAGGATCATGTCTACCA
391 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * * * *
5393944 AGTTTGATGCCAAAACTCCTTCCTAAAAAACTTTAAAAAATCTCGAACCAG-AAAAAG-TTTCAA
456 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTTAAA
* * * *
5394007 AATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCAT
520 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
5394072 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAGACCC
585 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
5394137 ACCTACCACCCTGTCCATCTACGGCTTGCGCATCCCGTCTCTCTAGCCGATGTAGTGCCCGCCCG
650 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * * * * *
5394202 CCCGCCCACCCGTTCATTTTGTCGGTTGGCTTACGCGTACGGAGTTTATTCCCAGTCTAAGATCA
715 CCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * * *
5394267 GACCGGACTGAGTGTTGCGGTAGCAGGATCGTCAGCATGCAGAGGGGGACCCGATCGATCCCCGG
780 GACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
** * *
5394332 CTTGCGCATCTTGCCCCTTTGGCCTGCTGAGCA
845 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
5394365 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG---ATCG-
* ** * * *
5394430 GTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAT-CGAGGGTT
62 G---A-TC---G---GA-CCGA-GG-GTT-A----C-G-GT-AG--C--A-C--ATGC-TGGGCT
** * * * * * ****** * * *
5394494 GCGGCAGCACATACTAGGCT-CGAGCA-TGTGCTGTTGCCGCATTTTTCTTCGTTGGGGCACCAT
98 -CGG--GCATGTGCT-GG-TGC-CGCATTTTTCT-TCGCCG-GGGCACCATCG-T-CGG-AGCAT
* * * *
5394557 CGCCGGAGCATCGTAGGAGAACCTGACTGGCGGCATTGGGGTT-CGACGA-CGGGGGGGCCGGGG
152 CACCGG-----------AGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGG
* * *
5394620 GGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGACCCTTATATTGGCCCCCTATCCCTCA
206 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
5394685 TCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGG
271 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5394750 CTATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
336 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5394815 TTTTAGCTGAATTTTTTTATACATGCCAAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGG
401 TTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
5394880 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AA
465 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
* * *
5394944 AATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGTCTTAAGGGACCATTGTATGAATT
530 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
5395009 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
595 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** ** *
5395074 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTTCTTGCCCGCCCAGT
660 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-GC
* * ** * *
5395139 C-GCTTGTTTCGTCGGTTGGCTTAGGCATATGGTTTTCATTCCCAGTCTAAGATCGGACCAGACC
724 CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * ** *** **
5395203 GAGGGTTGTGGCAGCAAGATCGGTAGCACATAGAGGGGG-CCCGGTGGATCCATGGCTTGCGCAT
789 AAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * **
5395267 CCCACCCCTCTGGCCGACTGAGTG
854 CCCGCCCCTCTGGCCGGCTGAGCA
*
5395291 CCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGG---G---T-----T---GA---C-TT---AG-----GCATACGGA
* * *
5395356 GTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTACGGTAGCACATGCTGGGCTCAGGCAT
40 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCAT
* * * *
5395421 GTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGACCG
105 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * * * * *
5395486 ACGGCATTAGGGTTCCGACGATTGGGGGGGCCAGGGGGCGGTGTGCGCACATGATGTGCGATAGG
170 GCAGCATTGGGGTTCCGACGATCGGGGGGGCC--GAGG-GGTGTGCGCACATGATGTGCGATGGG
** * * * *
5395551 TGCAAGTACTTGGCCCTTATATTGGCCCTCTATCACTCATCAAACCTTGAGAACTCACACCACCT
232 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * **
5395616 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG-CAGTTAAAATGTCTGAAATTAGGAC
297 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGAC
* * * * * *
5395680 ACTTTTTTCAAATGGTAAAAAAATATCTTGTACATTTTGAGTTTTTAGCTGAA---TTTGGGGCA
361 ACTTTTTTCAAATGGT-CACAAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
5395742 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
424 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
5395807 TAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAAAAAACGAATCGTCTTGCCA
489 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5395872 TGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTTCAAGCCATAAAAATGGCATTGG
554 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
5395937 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTACGCATC
619 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
5396002 CCATCTCTTTGGTC-AGCGTAGTGCCCGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTA
684 CCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
* * * *
5396066 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGT
748 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * * *
5396131 AGCACGTAGAGGGGGA-CCTAGCCTATCCTCGGCTTGCGTATCGCACCCCTCTGGCTGACTGAGC
813 AGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
5396195 G
877 A
* *
5396196 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * ** *
5396260 TGGACCAAGGGTTGCGATAGCACATGCTGGGATCGGGCATGTGCTGGTGCCATATTTTTCTTCAC
66 -GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * **
5396325 CAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATCGG
130 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGG
* * *
5396390 GGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCC
195 GGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
5396455 CTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
260 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
5396520 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACATTTTTCAAATGGTTACAAAATATTGT
325 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
5396585 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAACAAAGATCACCTCTTCC
390 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * ** * *
5396650 AAGTTTGGGGGCAAAAATCCTT-CGAAAAAAATTTTAAAAAATCTTGAATCC-CAAAAAGTTTCA
455 AAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTTA
*
5396713 AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
518 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
5396778 ATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
583 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* ** * * *
5396843 CCACCTACGACCCTATCGATCCACAACTTGCGCATCTCGACTCTCTGGCCGGCGTAGT-------
648 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* *
5396901 -----GCCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
713 CGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * *
5396961 CAGACTGGACCAAGGGTTGCGACAGCAACATCGGCAGCATGCAGA---GCACCCG--C-AT----
778 CAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
** ** * * *
5397016 -GC-T---CATTTCGTGCGT-T----GACTTAGGCA
843 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCA
** * * * *** * * * * *
5397042 TACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCTAGTCTAAGGTCAGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * ** * * * *
5397100 GGATCGAGGGTTGCGACAGCACATACTGGGCTCGAGCATGTGCT-GTGCCACATTTTTCTTCGTC
66 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
*** * ** * * * * *
5397164 GGGGCACCATTACCAGAGCATTGCTGGAGAACCTGACTGAC-GACATTGGGGTTTCGACGATCAG
131 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAG-CATTGGGGTTCCGACGATCGG
* * *
5397228 GGAGACTGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
195 GGGGGCCGA---GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
5397293 CCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
257 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
5397358 TTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAAATCT
322 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
5397423 TGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACGAGGATCACATCT
387 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * *
5397488 ACCAAGTTTGGGGTGAAAAATCCTTTCGAAAAGATTTTAAAAAATCCCGAA-CGTCAAAAAGTTT
452 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTT
* **
5397552 GAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
516 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
5397617 TCATTGTATGAATTCACAATCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAA
581 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* *
5397682 ACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-T--------T-G-GCCGG
646 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * *
5397736 CCCGCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAC
711 CCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
5397801 ATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-AGCTGATC
776 ATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATC
* * * *
5397865 CCCGGCTTGTGCATCCTGCCCCTCTGCCCGGCTGAGCT
840 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
5397903 CCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCGAATTAACGGAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC----T-A---AG
** * * *
5397968 TACATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTGTGGCAGAACATGCTAGGCTCGGGCATG
58 ---A-T--C-G-----GATCGGACC-GA--G-GG-TTACGGTAGCACATGCTGGGCTCGGGCATG
* * ** * * * * *
5398033 TGCTAGTGCCGCATTTTTTTTCGTTGGGGCACCATCGCCGGAGTATCGCCGGAGAACCTCACTGG
106 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* ** * * * *
5398098 CTGCATTCAGGTTTCGACGATCGGGAGGGCCGGGGGGCGGTGTACGCACATGATGTGCGATGGGT
171 CAGCATTGGGGTTCCGACGATCGGGGGGGCC--GAGG-GGTGTGCGCACATGATGTGCGATGGGT
* ** * *
5398163 GATGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCGCTT
233 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
5398228 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
298 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
5398293 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
363 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5398358 AACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCCGAAAGAATTTCAAA
428 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
5398423 AAATCCTGATCCGCAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAA
493 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
5398488 ACTTCAAGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGATTGGCATTGGCACA
558 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
5398553 CAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCCATCCACGACTTGCGCATCCCAT
623 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** *
5398618 CTCTCTGGCCGGCGTAATGCTTGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
688 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
** *
5398683 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCAAGATCGGCAGCAC
753 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * * *
5398748 GCAGAGGGGGACTCGGCCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGTTGAACA
818 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * ** * *
5398808 ACCGCACGCTCGTTTCGTGAGTTGATTTAGGTGTACGAAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * * * * **
5398873 GGACTGAGGTTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTTCTTTACC
66 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * * * *
5398938 GGGGCAGCATCGTCGGAGCATCACTGGAGAACCTCG-CTGGCGGCATTCGGGTTCTGACGATCGG
131 GGGGCACCATCGTCGGAGCATCACCGGAGAACCT-GACCGGCAGCATTGGGGTTCCGACGATCGG
** * * * * **
5399002 GGGCACCGGGGGGAGGTGAAAGCACATTATGTGCGATGGGTGCTGGTACTTGGAACTTATATTGG
195 GGGGGCCGAGGGG-TGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
5399067 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
257 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
5399132 TTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCT
322 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
5399197 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
387 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
5399262 ACCAAGTTTGGGGCCAAAACGCTTTCTGAAACAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
452 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT
* * * * *
5399327 AAAAATCATGAAAAATAGAAAACGAATTGTCTTGCCATGAAGCTTCATGTGAAGGCTTAAGGGAC
517 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
5399392 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCGTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * *
5399457 CCCACCTACCACCCTATTGATTCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT----GC
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* *
5399518 CCGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
712 CCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * **
5399579 TCGGATCGAACCAA-AGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGAGACCTGGTCGATCCC
777 TCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* ** * * * **
5399643 CGACTTAAGCATCCCACCCATCTAGCCGGCTGAGTG
842 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
5399679 CCAGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5399736 CATACGGAGT
Statistics
Matches: 6067, Mismatches: 815, Indels: 465
0.83 0.11 0.06
Matches are distributed among these distances:
831 1 0.00
832 1 0.00
837 1 0.00
838 71 0.01
839 71 0.01
840 3 0.00
841 445 0.07
842 94 0.02
843 1 0.00
844 3 0.00
845 13 0.00
846 5 0.00
848 2 0.00
849 1 0.00
850 5 0.00
853 3 0.00
854 3 0.00
857 6 0.00
858 1 0.00
859 2 0.00
860 1 0.00
861 375 0.06
862 283 0.05
863 54 0.01
864 3 0.00
865 94 0.02
867 1 0.00
868 24 0.00
869 4 0.00
871 118 0.02
872 62 0.01
873 3 0.00
874 28 0.00
875 5 0.00
876 165 0.03
877 924 0.15
878 85 0.01
879 150 0.02
880 560 0.09
881 1 0.00
882 179 0.03
883 1 0.00
884 5 0.00
885 8 0.00
886 2 0.00
887 2 0.00
888 9 0.00
889 2 0.00
890 2 0.00
891 5 0.00
892 3 0.00
893 37 0.01
894 514 0.08
895 4 0.00
896 7 0.00
897 9 0.00
898 5 0.00
899 1 0.00
900 24 0.00
901 8 0.00
902 10 0.00
903 96 0.02
904 282 0.05
905 398 0.07
906 4 0.00
907 28 0.00
911 9 0.00
912 2 0.00
913 1 0.00
914 3 0.00
915 8 0.00
916 15 0.00
917 6 0.00
919 2 0.00
920 6 0.00
921 1 0.00
922 1 0.00
923 1 0.00
925 9 0.00
926 265 0.04
927 357 0.06
928 12 0.00
929 2 0.00
930 1 0.00
932 1 0.00
934 1 0.00
935 3 0.00
936 2 0.00
937 3 0.00
938 1 0.00
940 2 0.00
941 1 0.00
943 1 0.00
944 4 0.00
945 1 0.00
947 2 0.00
948 1 0.00
949 3 0.00
952 23 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGG
GGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
CCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
Found at i:5394431 original size:26 final size:26
Alignment explanation
Indices: 5394395--5394473 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
5394385 GTTGACTTAG
* *
5394395 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
5394421 GCATATGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
5394447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5394473 G
1 G
5394474 ATCAGACCGA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5397068 original size:26 final size:26
Alignment explanation
Indices: 5397039--5397091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5397029 GTTGACTTAG
5397039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5397065 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5397091 G
1 G
5397092 GTCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5399191 original size:880 final size:870
Alignment explanation
Indices: 5397068--5399735 Score: 3380
Period size: 880 Copynumber: 3.0 Consensus size: 870
5397058 AGTCTAAGCA
* * * * ** * * * *
5397068 TACGGAGTTCATTCCTAGTCTAAGGTCAGACCGGA-TCGAGGGTTGCGACAGCACATACTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGTTTATGGCAGAACATGCTAGGCT
* * * ** * ** *
5397132 CGAGCATGTGCT-GTGCCACATTTTTCTTCGTCGGGGCACCATTACCAGAGCATTGCTGGAGAAC
65 CGGGCATGTGCTAGTGCCGCATTTTTTTTCG-CGGGGCACCATCGCCGGAGCATCACCGGAGAAC
* * * ** * ***
5397196 CTGACTGACGACATTGGGGTTTCGACGATCAGGGA-GACTGAGGGGG-GGTGTGCGCACATGATG
129 CTCACTGGCGGCATTCAGGTTTCGACGATC-GGGAGGACCG-GGGGGAGGTGAAAGCACATGATG
** *
5397259 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
192 TGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5397324 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5397389 ATGGGGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * *
5397454 TGTGCATGCCAAAAAAAATACGAGGATCACATCTACCAAGTTTGGGGTGAAAAATCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
5397519 AGATTTTAAAAAATCCCGAACGTCAAAAAG-TTTGAAAAATTATGAAAAATAGAAAACGAGTCGT
452 A-ATTTTAAAAAATCCCGACCG-CAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
5397583 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTCACAATCCATAAAAATG
514 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5397648 GCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* *
5397713 GCGCATCCCGTCTCTTTGGC--CG--GC-CC-GCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTT
644 GCGCATCCCGTCTCTCTGGCGGCGTAGCGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
* * * *
5397772 AGGCATACGGAGTTCATTGCCAGTCTAACATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGG
* * * ** ** * *
5397837 CAGCACGTAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCTGCCCCTCTGCCCGGCTGAGC
774 CAGCACGCAGAGGGGGA-CCGGCCGATCCCC-GCTTAAGCATCCCACCCCTCTGGCCGGCTGAAC
* * * *
5397902 TCCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCG
837 ACCAGCACGCTCGTTTCGTGAGTTGA-TT-----T----AG----------GT-G
* *
5397957 AATTAACGGAGTACATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTGTGGCAGAACATGCTAG
1 ---T-ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTATGGCAGAACATGCTAG
* * *
5398022 GCTCGGGCATGTGCTAGTGCCGCATTTTTTTTCGTTGGGGCACCATCGCCGGAGTATCGCCGGAG
62 GCTCGGGCATGTGCTAGTGCCGCATTTTTTTTCG-CGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
5398087 AACCTCACTGGCTGCATTCAGGTTTCGACGATCGGGAGGGCCGGGGGGCGGTGTACGCACATGAT
126 AACCTCACTGGCGGCATTCAGGTTTCGACGATCGGGAGGACCGGGGGGAGGTGAAAGCACATGAT
* *
5398152 GTGCGATGGGTGATGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACT
191 GTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5398217 CACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
5398282 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5398347 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
5398412 AGAATTTCAAAAAATCCTGATCCGCAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGT
451 A-AATTTTAAAAAATCCCGA-CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
5398477 CTTGCCATGAAACTTCAAGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGATTG
514 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5398542 GCATTGGCACACAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCCATCCACGACTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
*
5398607 GCGCATCCCATCTCTCTGGCCGGCGTAATGCTTGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTT
644 GCGCATCCCGTCTCTCTGG-CGGCGT-A-GC--GCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTT
* *
5398672 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCAAG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGG
* *
5398737 ATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGT
769 ATCGGCAGCACGCAGAGGGGGAC-CGGCCGATCCCC-GCTTAAGCATCCCACCCCTCTGGCCGGC
5398802 TGAACAACC-GCACGCTCGTTTCGTGAGTTGATTTAGGTG
832 TGAAC-ACCAGCACGCTCGTTTCGTGAGTTGATTTAGGTG
* * *
5398841 TACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTATGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTATGGCAGAACATGCTAGGCTC
* * * * *
5398906 GGGCATGTGCTAGTGTCGTATTTTTCTTTAC-CGGGGCAGCATCGTCGGAGCATCACTGGAGAAC
66 GGGCATGTGCTAGTGCCGCATTTTT-TTT-CGCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
* * *
5398970 CTCGCTGGCGGCATTC-GGGTTCTGACGATCGGG-GGCACCGGGGGGAGGTGAAAGCACATTATG
129 CTCACTGGCGGCATTCAGGTTTC-GACGATCGGGAGG-ACCGGGGGGAGGTGAAAGCACATGATG
5399033 TGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5399098 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5399163 ATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
5399228 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCTTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
5399293 CAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATTGTC
452 -AATTTTAAAAAATCCCG-ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5399358 TTGCCATGAAGCTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5399423 CATTGGCACGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATTGATTCACGACTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
5399488 CGCATCCCGTCTCTCTGGTCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
645 CGCATCCCGTCTCTCTGG-CGGCGTAGCGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
* * * * * *
5399549 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAA-AGTTGCTGCAGCAGGATCGA
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * **
5399613 CAGCACGCAGAGGGAGACCTGGTCGATCCCCGACTTAAGCATCCCACCCATCTAGCCGGCTGAGT
774 CAGCACGCAGAGGGGGACC-GGCCGATCCCCG-CTTAAGCATCCCACCCCTCTGGCCGGCTGAAC
* * * **
5399678 GCCAGTACGCTCGTTTCGT-AGGTTGACTTAGGCA
837 ACCAGCACGCTCGTTTCGTGA-GTTGATTTAGGTG
5399712 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5399736 CATACGGAGT
Statistics
Matches: 1576, Mismatches: 170, Indels: 81
0.86 0.09 0.04
Matches are distributed among these distances:
870 5 0.00
871 116 0.07
872 72 0.05
874 1 0.00
879 8 0.01
880 598 0.38
881 5 0.00
882 1 0.00
884 1 0.00
885 2 0.00
892 1 0.00
893 71 0.05
894 510 0.32
895 10 0.01
897 2 0.00
899 1 0.00
901 2 0.00
904 5 0.00
905 163 0.10
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGTTTATGGCAGAACATGCTAGGCTC
GGGCATGTGCTAGTGCCGCATTTTTTTTCGCGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
CACTGGCGGCATTCAGGTTTCGACGATCGGGAGGACCGGGGGGAGGTGAAAGCACATGATGTGCG
ATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATT
TTAAAAAATCCCGACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
CCGTCTCTCTGGCGGCGTAGCGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCGGCCGATCCCCGCTTAAGCATCCCACCCCTCTGGCCGGCTGAACACCAGCACG
CTCGTTTCGTGAGTTGATTTAGGTG
Found at i:5399738 original size:26 final size:26
Alignment explanation
Indices: 5399709--5399761 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5399699 GTTGACTTAG
5399709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5399735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5399761 G
1 G
5399762 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5400925 original size:26 final size:26
Alignment explanation
Indices: 5400875--5400927 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5400865 GTTGACTTAG
* **
5400875 GCATACGGTGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5400901 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5400927 G
1 G
5400928 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5402050 original size:27 final size:25
Alignment explanation
Indices: 5402012--5402061 Score: 82
Period size: 27 Copynumber: 1.9 Consensus size: 25
5402002 GACTTAGGCG
5402012 TACGGAGTTCATTCCCAGTCCTAAGCA
1 TACGGAGTTCATT-CCAGT-CTAAGCA
5402039 TACGGAGTTCATTCCAGTCTAAG
1 TACGGAGTTCATTCCAGTCTAAG
5402062 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 5 0.22
26 5 0.22
27 13 0.57
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (25 bp):
TACGGAGTTCATTCCAGTCTAAGCA
Found at i:5403788 original size:26 final size:26
Alignment explanation
Indices: 5403759--5403811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5403749 TTTGACTTAG
* **
5403759 GCATACGGTGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5403785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5403811 G
1 G
5403812 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5404684 original size:26 final size:26
Alignment explanation
Indices: 5404655--5404707 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5404645 GTTGACTTAG
5404655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5404681 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5404707 G
1 G
5404708 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5405751 original size:26 final size:26
Alignment explanation
Indices: 5405714--5405764 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5405704 TTGACTTAGG
*
5405714 CATACGGTGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
5405740 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
5405765 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:5406651 original size:26 final size:26
Alignment explanation
Indices: 5406621--5406673 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5406611 GTTGACTTAG
5406621 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
5406647 GCATACGGAGTTCTTTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5406673 G
1 G
5406674 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5407554 original size:316 final size:322
Alignment explanation
Indices: 5406950--5407562 Score: 1028
Period size: 316 Copynumber: 1.9 Consensus size: 322
5406940 TAGGTGAATT
* *
5406950 GTTTTGTGCCATGGCCAACAAAATAGAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTT
1 GTTTCGTGCCATGGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTT
*
5407015 CCCGAAAAATTTTTAAAAAATCCCGAACCCCAAAAAGTTAAAAAAATCCCGGTGGAAAAATAGAA
66 CCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTAAAAAAATCCCGGTGGAAAAATAGAA
*
5407080 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
5407145 ATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTAGCACCCTATCGAT
196 ATAAAAATGGCATTGGCATGCAGAAATAAGAAAATGTGCCTAAACCCACCTAGCACCCTATCGAT
*
5407210 CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCCGCCCGCTCGCCCGCTC
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCCGCCCGCTCGCCCGCTC
5407272 GTTTCGTG-CATGG-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCC-T
1 GTTTCGTGCCATGGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTT
*
5407334 T-CCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTT-AAAAAAT-TC-GT-GAAAAATAGA
65 TCCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTAAAAAAATCCCGGTGGAAAAATAG-
*
5407394 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATG
129 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
5407459 CCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCT-GTCACCCTATC
194 CCATAAAAATGGCATTGGCATGCAGAAATAAGAAAATGTGCCTAAACCCACCTAG-CACCCTATC
* * *
5407523 GATCTACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAG
258 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
5407563 CGCCCGCCCA
Statistics
Matches: 276, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
315 10 0.04
316 161 0.58
317 1 0.00
318 7 0.03
319 37 0.13
320 6 0.02
321 47 0.17
322 7 0.03
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (322 bp):
GTTTCGTGCCATGGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTT
CCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTAAAAAAATCCCGGTGGAAAAATAGAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATAAGAAAATGTGCCTAAACCCACCTAGCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCCGCCCGCTCGCCCGCTC
Found at i:5409503 original size:26 final size:26
Alignment explanation
Indices: 5409467--5409519 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5409457 GTTGACTTAG
* *
5409467 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
* *
5409493 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
5409519 G
1 G
5409520 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:5410344 original size:26 final size:26
Alignment explanation
Indices: 5410315--5410367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5410305 GTTGACTTTG
*
5410315 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5410341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5410367 G
1 G
5410368 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5410489 original size:848 final size:846
Alignment explanation
Indices: 5408995--5410608 Score: 2253
Period size: 848 Copynumber: 1.9 Consensus size: 846
5408985 AAATGGTCAC
* *
5408995 AAAATACAGGGATCACGTCTACCAATTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAAT
* * * *
5409060 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTTTTGCCATGAAACTT
66 CCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
5409125 AACGTGAAGGCTTAAGGGACCATGGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
131 AACGTGAAGGCTTAAGGGACCATGGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
** **
5409190 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCT
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCT
* * *
5409255 CTGGCCGGCGTAGTGCCCACCCGTCCGGCAGCTCATTTTGTCGGTTGGCTAAGGCATACAAAGTT
261 CTGGCCGGCGTAGTGCCCACCCGCCCGCCAGCTCATTTCGTCGGTTGGCTAAGGCATACAAAGTT
* * *
5409320 CAATCCCTATCTAAGATCGGATCAGACCGAGAGTTACGGTAGCAGGATTAGCAGCACATAGAGTG
326 CAATCCCTATCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAAGATTAGCAGCACATAGAGTG
* * ** *
5409385 GGACACGGTCGATCACCGACTTGAGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGTTCGT
391 GGACACGGCCGATCACCGACTTGAGCATCCCGCCCCTCTCACCGGCTGAGCACCCGCACGCTCGT
*
5409450 TTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGA
456 TTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGA
* * *
5409515 CTAAGATCAGACTAGACTGATGGTTGCGGCAACACATGCTGGGCTTAGGCATGTGCTGGTGCCGC
521 CTAAGATCAGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTTAGGCATGTGCTGGTGCCGC
** * * * *
5409580 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCCGCATTGGTGT
586 ATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCCGCATTGGGGT
* * * *
5409645 TCCAATGA-CTGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTAGCAC
651 TCCAACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCAC
5409709 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAGCCGTTAAGGTGTC
716 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAGCCGTTAAGGTGTC
5409774 TGAAATGGGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
781 TGAAATGGGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
5409839 A
846 A
* ** **
5409840 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAAT
** *
5409905 CCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
66 CCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
* * * *
5409970 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCATGTAGA
131 AACGTGAAGGCTTAAGGGACCATGGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
5410034 ACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCAG-CTC
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCC-GTCTC
* * * * *
5410098 TCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
260 TCTGGCCGGCGTAGTGCCCACCCG----CCCGCCAGCTCATTTCGTCGGTTGGCTAAGGCATACA
* * * ** *
5410163 AAGTTTATTCCC-AGTCTAAGATCAGACC-GAACTGA-AGGTTGTGGTAGTAAGATCGGTAGCAA
321 AAGTTCAATCCCTA-TCTAAGATCAGACCAG-ACCGAGA-GTTACGGTAGCAAGAT---TAGC-A
** * * * * **
5410225 GCA-A-AG-G-GGGAGTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTCACCGGTTGAGTGC
379 GCACATAGAGTGGGACACGGCCGATCACCGACTTGAGCATCCCGCCCCTCTCACCGGCTGAGCAC
** * *
5410286 CCGCACGCTCGTTTTGTGGGTTGACTTTGGCATAC-GAAGTTTATTCCCAGTCTAAGCATACGGA
444 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTGATTCCCAGTCTAAGCATACGGA
* * * *
5410350 GTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCATATGCTGGGCTT-GAGCA
508 GTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTTAG-GCA
*
5410414 TGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
572 TGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC
* * * **
5410479 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCTTACATGATGTGCGATGGGTG
637 AGCCGCATTGGGGTTCCAACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * **
5410544 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTA
702 CTGGTACTTAGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTA
5410609 AAGAGCATTT
Statistics
Matches: 669, Mismatches: 85, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
844 101 0.15
845 156 0.23
847 5 0.01
848 297 0.44
849 99 0.15
850 2 0.00
851 5 0.01
852 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (846 bp):
AAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAAGCCTTCCAAAAAAATTTTAAAAAAT
CCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
AACGTGAAGGCTTAAGGGACCATGGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCACCCGCCCGCCAGCTCATTTCGTCGGTTGGCTAAGGCATACAAAGTT
CAATCCCTATCTAAGATCAGACCAGACCGAGAGTTACGGTAGCAAGATTAGCAGCACATAGAGTG
GGACACGGCCGATCACCGACTTGAGCATCCCGCCCCTCTCACCGGCTGAGCACCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGA
CTAAGATCAGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTTAGGCATGTGCTGGTGCCGC
ATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCCGCATTGGGGT
TCCAACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCAC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAGCCGTTAAGGTGTC
TGAAATGGGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
A
Found at i:5411430 original size:26 final size:26
Alignment explanation
Indices: 5411394--5411446 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5411384 GTTGACTTAG
*
5411394 GCATACGGAGTACATTCCCAGCCTAA
1 GCATACAGAGTACATTCCCAGCCTAA
* *
5411420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGCCTAA
5411446 G
1 G
5411447 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGCCTAA
Found at i:5413225 original size:26 final size:26
Alignment explanation
Indices: 5413195--5413247 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5413185 GTTGACTTAG
* **
5413195 GCATACGTAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5413221 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5413247 G
1 G
5413248 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5413478 original size:902 final size:892
Alignment explanation
Indices: 5411205--5415651 Score: 5655
Period size: 901 Copynumber: 5.0 Consensus size: 892
5411195 CGGTTGAGCA
* * * * *
5411205 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTTATTCCCAGTCTAAGATCGAACC
1 CCCGC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * * ** *
5411270 AGAATGAGGGTTGCAGCAGCAAGATCGGTAACACGCAGTGGGGGACCCGATCGAT-CCCTAGCTT
65 AGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGA-CTT
* * * *
5411334 GCACATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGTTCGTTTCGTTGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGG-CG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
5411399 CGGAGTACATTCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
192 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
** * * *
5411464 GTCACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCA
257 GTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCA
* **
5411529 TCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGG
320 TCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGG
5411594 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
385 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
5411659 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
450 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
5411724 GCCAATAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAG
515 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
5411789 TTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
580 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGG
* * ** * **
5411854 CCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAA
645 CCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAAA
* * * *
5411919 AATCGAAAACGAGTTGTCTTGCCATGAAACTCCACGTTAAGGCTTAAGGGACCATTGTATGAATT
709 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5411984 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT-AACTGCACCTACCAC
774 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC-CCACCTACC-C
* * * *
5412048 CCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
837 CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTACTGCCCGCCCG
* *
5412104 CCCGCCTGTCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCG
1 --C-CC-G-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * ** ** * *
5412169 AATCTGACTGAGGGCTGCTGCAGCTGGATCGACAGCACACAGAGAGGGACCCGGACGATCCCCGA
61 AACCAGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGA
**
5412234 CTTGCGCATCTTGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
126 CTTGCGCATCCCGCCCCTCTGGC--GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * ** *
5412299 GTATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
189 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
*
5412364 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCA
254 AGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCA
* * * ** *
5412428 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCTAACGAACGGGGGGGCC
317 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC
*
5412493 -GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
382 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5412557 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCA
447 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5412622 GTTA-CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
512 G-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5412686 CGAGTTTTTTGCTAAATTTTTTTGTGCATAG-CAACAAAAATTCAAGGATCACGTCTACCAAGGT
576 CGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGGT
* *** * **
5412750 TGGGGCCAAAACTCCTTCGAAAAAAAATTTTAAACAATATGGAACCACAAAATGTTTCAAAAATT
640 TGGGGCCAAAACTCCTTCG--AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATT
* * *
5412815 GTGAAAAAAAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
703 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5412880 TGAATTTAGAAGCTATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCT
768 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
5412945 ACCCCGCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGTGTACTGCCCGCCCG
833 ACCCC-CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTACTGCCCGCCCG
* * **
5413006 CCCGTCCGCTCGTTTCAACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCC
1 CCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* *
5413071 AGACCGAGGGTTGCAGCAGCAAGATCGGTACCACACA-AGGGGGGACCCGGCCGATCCCCGACTT
65 AGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGA-GGGGGACCCGGCCGATCCCCGACTT
* * *
5413135 GCACATCCCGCCCCTCTGGCCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGG-C-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** *
5413200 CGTAGTTCATTCTTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
192 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* *
5413265 GTTGCAGCAGCACATGCTAGGTTCGGGCATGTGC-GTGTGCCGCATTTTTCTTCGTCGGGGCACC
257 GTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTG-GTGCCGCATTTTTCTTC-TCGGGGCACC
* * *
5413329 ATCATCGGAGCATCACCGGAGAACCTGACCGACAGCATTATGGTTCCGACGATCGGGTGGGCCGA
319 ATCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC--
*
5413394 GGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCC
382 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5413459 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACAA
447 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5413524 GTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACCAAATCTTGTACACTTC
512 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
5413589 GAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAAATACAAGGATAACGTCTACCAA-GTCT
577 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGT-T
* * * * * * *
5413653 GAGGCCAAAACACCTTTCGAAAAAATTTTAAAAAAGCCCGAATCATAAAAAGTTTTGAAGATCGT
641 GGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGT
* * * *
5413718 TAAAAATATAAGACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATG
705 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5413783 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
770 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * ** * *
5413848 CAGCCTATCGATCCACGGCTCGCTCATCCCGTCTCTCTTGTCGGCATAGTGCCCGCCAG
835 C-CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTACTGCCCGCCCG
* * * * * *
5413907 CCCGCCCCATCATTTCATCGGTTGGCTTAAGCTTACGAAGTTCATTCCCAGTCTAAGATC-AGAT
1 CCCGCCGC-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AC
* ** ** * * * *
5413971 CGGACCAAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCC-AGGT
64 CAGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGA-CT
* * *
5414035 TGCGCATCCTGCCAAC-C--G-GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
128 TGCGCATCCCGCC-CCTCTGGCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
5414096 CGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCACACCGGACCGAGG
192 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * *
5414161 GTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACGGGGGCACCA
257 GTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCACCA
* * *
5414226 ---TC---GC--CA-C-----A--T----G---GCATTAGGCTTCCGGCGATCGGGGTGGCCGGG
320 TCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC-GG
* *
5414268 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCTCCTATCCCT
384 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5414333 CACCAACCCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
449 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5414398 AGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
514 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * ** *
5414463 TTTTTTGGCTGAATTTTTCGGTGCATGCCAACAAAAATACCAGGATCACGTCTACCAA-GTCTGG
579 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGT-TGG
* *
5414527 GGCCAAACAC-CTTTCGAAAAAATTTTAAAAAATCCCGAA-CAGCCAAAAGTTTTGAAAATTGT-
643 GGCCAAA-ACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCA-CAAAAAGTTTTGAAAATTGTG
*
5414589 -----TA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-TGACCATTGTATGA
706 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5414647 ATTTCCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
771 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
5414712 ATCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCACCCG
836 -CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCC-G-GT-GT-ACTGCCCGCCCG
* ** * * *
5414774 CCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACATAGTTCATTCCCAATCTAAGGTCAAACC
1 CCCGC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * *** * * * ** * * * *
5414839 CGACTAAGGGTTATGGCAGCAGGATCAGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTG
65 AGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTG
* ** *
5414904 CGCATCACGCCTTTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGG-CG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
5414969 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACCGAACCGTG
193 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGACCGGACCGAG
*
5415034 GGTTGCGGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGCATTTTTC-T-T-----CA-C-
256 GGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCA
* * * * *
5415090 -CGTCGCAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
320 TCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGG
* * *
5415154 GGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTC
385 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5415219 ATCAAACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTA
450 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
5415284 GCCATTAAAGTGTCTGACATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
515 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
5415349 TTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGG
580 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGG
* * * *
5415414 CCAAAAATCATTCTGAATAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAA
645 CCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAAA
* * * * *
5415479 AAAAGAAAAAGACTCGTCTTGCCATGAAACTTCTCGAGAAGGCTTAAGGGACCATTGTATGAATT
709 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5415544 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACAACC
774 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC-CCC
* ** * *
5415609 CTATCGATCCATGGCTTGTGCATCCCGTCTCTCTAGCCAGTGT
838 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGT
5415652 GCGCACATGA
Statistics
Matches: 3098, Mismatches: 361, Indels: 184
0.85 0.10 0.05
Matches are distributed among these distances:
863 111 0.04
864 42 0.01
865 4 0.00
866 5 0.00
867 116 0.04
868 3 0.00
869 3 0.00
870 2 0.00
871 44 0.01
872 334 0.11
873 29 0.01
874 56 0.02
875 1 0.00
876 1 0.00
877 1 0.00
879 1 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 246 0.08
886 68 0.02
887 2 0.00
888 2 0.00
890 2 0.00
891 2 0.00
892 3 0.00
893 40 0.01
894 110 0.04
895 2 0.00
896 152 0.05
897 3 0.00
898 267 0.09
899 66 0.02
900 7 0.00
901 576 0.19
902 521 0.17
903 266 0.09
904 6 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (892 bp):
CCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCA
GACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGC
GCATCCCGCCCCTCTGGCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCG
GAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAA
CTCCTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCCCCTATCGAT
CCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTACTGCCCGCCCG
Found at i:5414127 original size:26 final size:26
Alignment explanation
Indices: 5414091--5414143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5414081 GTTGACTTAG
*
5414091 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5414117 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5414143 G
1 G
5414144 ATCACACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5414999 original size:26 final size:26
Alignment explanation
Indices: 5414963--5415023 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
5414953 GTTGACTTAG
5414963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5414989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5415015 GCATACGGA
1 GCATACGGA
5415024 CCGAACCGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5416081 original size:492 final size:492
Alignment explanation
Indices: 5415157--5416134 Score: 1625
Period size: 492 Copynumber: 2.0 Consensus size: 492
5415147 GGCCGGGGGT
*
5415157 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5415222 AAACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCAAGAACACACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5415287 ATTAAAGTGTCTGACATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* *
5415352 TTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCA
196 TTAGCTGAAGTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGACCA
* * *
5415417 AAAATCATTCTGAATAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAA
261 AAAATCATTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAAA
*
5415482 AGAAAAAGACTCGTCTTGCCATGAAACTTCTCGAGAAGGCTTAAGGGACCATTGTATGAATTTAC
326 AGAAAAAGACTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTAC
5415547 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACAACCCTA
391 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACAACCCTA
* * **
5415612 TCGATCCATGGCTTGTGCATCCCGTCTCTCTAGCCAG
456 TCAATCCACGGCTTCCGCATCCCGTCTCTCTAGCCAG
5415649 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* ** *
5415714 AAATCTTGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCAAGAACACACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5415779 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * *
5415844 TTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGACCA
196 TTAGCTGAAGTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGACCA
* * *
5415909 AAACTCCTTGC-GAAAAAATTTTAAACAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAA
261 AAAATCATT-CTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAA
* * * *
5415973 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
325 AAGAAAAAGACTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
5416038 CATGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCAGCTACCACCCT
390 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACAACCCT
*
5416103 ATCAATCCACGGTTTCCGCATCCCGTCTCTCT
455 ATCAATCCACGGCTTCCGCATCCCGTCTCTCT
5416135 GGCCGGCGTA
Statistics
Matches: 450, Mismatches: 35, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
492 449 1.00
493 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (492 bp):
TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACACACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
TTAGCTGAAGTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGACCA
AAAATCATTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAAA
AGAAAAAGACTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACAACCCTA
TCAATCCACGGCTTCCGCATCCCGTCTCTCTAGCCAG
Found at i:5417279 original size:25 final size:26
Alignment explanation
Indices: 5417244--5417295 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
5417234 GTTGACTTAG
5417244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5417270 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5417295 G
1 G
5417296 ATCCGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5420258 original size:846 final size:844
Alignment explanation
Indices: 5415648--5422403 Score: 6818
Period size: 903 Copynumber: 7.7 Consensus size: 844
5415638 TCTCTAGCCA
* *
5415648 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
* * *
5415713 CAAATCTTGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
5415778 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
130 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
5415843 TTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGACC
195 TTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
5415908 AAAACTCCTTGCGAAAAAATTTTAAACAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
5415973 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *** * *
5416038 CATGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCAGCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ** * *
5416103 ATCAATCCACGGTTTCCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCTGCTCGTTTT
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCACTCATTTC
* * * * * *
5416165 GTTGGCTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG
519 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG--GCA-
* * * * * ** *
5416230 GAGCAGGATCAGTAGCAAGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCTGCCCCTTT
581 -TGC--GA-C---AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCT
* * *
5416295 GGCCAGTTGAGCGCCCGCACGTTCG-TTCTGTGGGTTGACTTAGGAATACGGAGTTCATTCGCAG
639 GG-CGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGAC-T-----T----AG-------GCA-
*
5416359 TTTAAGCATAGGAGTTCATTCCCAGTCTAAGATC-GAGCCAGACCGATGG-TTGCGGCAGCACAT
684 --T-A-C---GGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGA-GGATTGCGGCAGCACAT
* ** ** * *
5416422 GCTAGGCTCGGTAATGTGCTGGTGCCAAATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGT
740 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA----C----CA-C--
* ** * * *
5416487 CGGAGAACCTGACCGGTGGCATTAGGGTTCCGATGATCGAGGGGGTCGGGGG
794 CGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGG
** * * *
5416539 GTGTGCGTGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCGCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
5416604 CAAA-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
5416668 CATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
130 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** * *
5416733 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATATCTACAAAGTTTGCGGCC
195 TTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * **
5416798 AAAAATCCTTCCCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAATTTTGAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
5416863 TAGAAAACTAGTCGCCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
5416928 CAGGCCATAAAAATGGCATTGCCACACAGAAATATGAAGATTTGCCTAAACCCACATACCACCCT
389 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
5416993 ATTGATCGACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCGCGCCCGCTTGCCCG
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCTCGCCCA
* * *
5417058 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAGA
511 CTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-G----GACCAGA
* * * *
5417123 CCGAAGGTTGCTACAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGC
571 CTG-AGG--G-----GCATG--CGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGC
* *
5417188 ATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
626 ATCCCACCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
5417253 GTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAAGGTTAC
690 GTTCATTCCCAGTCTAAG-AT-CG-G---A---CC-G-----GA-CCG---AG---G-A--TTGC
** * * * * * *
5417318 GGCAAAACTTGCCGGGCTCGGGCATGTCCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATTGCA
730 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---C-
* * * * * * *
5417383 AGATAATCGCCAGAGACCCTGACCGACGGCATTAGGGTTCCGACAATCGAGGGGCCTTGGGGGG
791 -------CACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC---GGGGG
* *
5417447 GTGTGCGCACATGGTGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATGCCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
* * * *
5417512 CAAACGTCGAGAACTCACATCCCCTTAAAGAGCATTTCAGATTTTACAGGTTGGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
5417577 CATTAAAGTGCCTGAAAT-AGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAG-
130 CATTAAAGTGTCTGAAATGA-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5417640 TTTTAGCTGAATTGTTTTTTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT-GTGC
194 TTTTAGCTGAATT-TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
5417704 CAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
258 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
5417769 ATATTAAAACGAGTCGTCTTGACATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
323 ATA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * *
5417834 TACAAG-CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGCGCCTAAACCCACCTACCGCC
387 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
5417898 CTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCCACCTGCC
452 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCA-CT---
* * * * * *
5417963 CGTTTGTTTCGTCGGTTAGCTTAGGCATACAAAGTTCATTCCCAGTCCAAGATCGAACCGGACTG
513 C----ATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
* * * *
5418028 A-GGG-TTGCGGCAGCAGGATCGACAGCATGTAAAGGGGACCTGGCCGATCCCTGGCTTGCGCAT
574 AGGGGCATGC-G-A-CA-G--C-AC-GCA-G--AGGGGGACCCGACCGATCCCTGGCTTGCGCAT
* * * * *
5418091 CCCACCCCTCTGGCTGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATGCAGAGT
628 CCCACCCCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
5418156 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGACATGT
692 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
5418221 GCTGGTGCTGTATTTTTCTTCGTAGGGGCACCATCACC-G-G----T-------GGCATTGGGGT
757 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCACCGGAGAACCTAACCGACGGCATTGGGGT
* *
5418273 TTCGACAATCAGGGGGGCCGGGGG
822 TCCGACGATC-GGGGGGCCGGGGG
* *
5418297 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTTCCCCTATCCCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG-GCCCCTATCCCTCAT
* *
5418362 CAAACCTTGAGAACTCACACCCCCTTAAAGAG-ATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5418426 CATTAAAGTGTCTGAAAT-AGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
130 CATTAAAGTGTCTGAAATGA-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5418490 TTTTAGCTGAATTTTTTTGTGCATTCCAAAAAAAATAAAAGGATCACGTCTTCCAATTTTGGGGC
194 TTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
5418555 CAAAACTCCTTCTGGAAAAATGTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
258 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
5418620 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
5418685 CCAAGCCATAAAAATGGCATTGGCACACCGAAATATGAAGATGTACCTAAACCCACCTACCACCC
388 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * *
5418750 TATCGATTCACAACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTC
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCT----CGCCCACTC
* *
5418815 GA-TTCGTCGATTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGAATGGACCGGACCGGAC
514 -ATTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAG-AT----CGGACCAGAC
* * *
5418878 CGAGGGTTGTGGTAGTAG-GATCAGTAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGC
572 TGA--G--G-GGCA-T-GCGA-C---AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGC
* * *
5418942 ATCCCGCCCCTCTGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGATGACCTAGACATACAGA
626 ATCCCACCCCTCTG-GCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA
* * *
5419007 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
676 ---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTG
* * * ** * *
5419072 CGGTAGCACATGCTGGGCTTGGGCATGTGCTGATGTAGCATTTTTCTTTGCCGGGGCACCATCGT
729 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA----
* * * * * * *
5419137 CGGAGCATCGTCGGAGAACTTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGG
790 C----CA-C--CGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
*
5419200 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
* *
5419265 CAAACCT-GACGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
65 CAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5419329 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGT
129 CCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
5419394 TTTGAGCTGAATTTTTTTTTGCATCCCAACAAAAATACAAGAATCATGTCTACCAAGATTGGGGC
194 TTTTAGCTGAA-TTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** * *
5419459 CAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAA
258 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* **
5419524 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGGTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** *
5419589 ACAAGCCATAAAAATATCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
388 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
5419654 TATCGATCCACGGCTTGCGCATCCCGTCTCTCGGGTCGACGTAGTGCCCGCTCGCCCACTCATTT
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCACTCATTT
* * *
5419719 CATCGGTTGGCTTAGGCATA-GGTAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGG-AT
518 CGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGGCAT
* * *
5419781 GCGACAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTTTGGTCGGCT
582 GCGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGG-CGGCT
5419846 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
646 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* **
5419911 GGACTGGACCGAGGATTGCGGTGGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
711 GGACCGGACCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
5419976 TCGTCGGGGCACCACCACCGGAGAACCTAACCGACGGAATTGGGGTTCCGACGATTGGGGGTGCC
776 TCGTCGGGGCACCACCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCC
5420041 GGGGG
840 GGGGG
* * *
5420046 GTGTGCACACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTATATCCCTCAT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC-CTATCCCTCAT
* * *
5420111 CACACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
5420176 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
130 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
5420241 TTTAGCTGAAATTTTTTTTGCATGCCAACAAAAATACAAGAATCATGTATACCAAGTTTGGGGCC
195 TTTAGCTG-AATTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * *
5420306 AAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAAGCACAAAAAGTTTCAAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
5420371 TAGGAAACGAGTCGTCTTGCGATGAAACTTCATGTGAAGGCTTAAGGGGCCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* ** *
5420436 CAAGCCATAAAAATGGCATTGGAACCCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
5420501 ATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCTGACGTAGTGCCCGCTCGCCCGCCTGCTCG
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCG--C-CC-ACTCA
* * * * * *
5420566 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACTAGACCGAGGGTT
515 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG--
* * ** * * *
5420631 GCCACAGTGGGATCGATAGCACGCATAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCC
578 G---CA-T--G--CGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCC
* * ** *
5420696 CTCAGGCTGGCTGAGCGCCCCCACGCTCGTTTCACGGTTTGACTTAGGCATACGGAGTTTATTCC
635 CTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG----C-------A----
* *
5420761 TAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGA-GAGTTGCGGCAGCA
684 TA--C---G------GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGA-TTGCGGCAGCA
* * * * **
5420825 CATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC--GG-AGCATCGTCGGAGAAC
737 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCACCGGAGAAC
* * * * *
5420887 CTAACCGACGGTATTAGGGTTTCGA-TAGTCGGGGGGTCGGAGGG
802 CTAACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGG-GGG
* * * *
5420931 GTGTGCGCACACGCTGTGCGATGGGTGCTAGTACTT-GCCCTTATAGTGGCCCTCTATCCCTCGT
1 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC-CTATCCCTCAT
* * *
5420995 CAAACCTCAAGAACTCACACCCTCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
5421060 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTGCACTTCGAGTT
130 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
5421125 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTTAGCTGAATT-TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
5421190 AAAACTCCTTTCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTTTTAAAAATCAG-GAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC-GTGAAAA
* *
5421254 ATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5421319 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
388 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
5421384 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCATTGCCCGCCTA
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCC---GCTCGCCCA
* * * * *
5421449 CTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCAGATCAGACTGAG
511 CTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAG
* * * * *
5421514 GCTTACGACAGCAGGATCGACAGCACGTAGAGGGGGACCC-AGTCGATCCTTGGCTTGCACATCC
576 G-----G---GCATG--CGACAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCC
* * *
5421578 CACCCCTCTGGCCAGCTGAGCGCCTGCACACTCGTTTCGTCGGTTGACTTAAGCATACGGAGTTC
630 CACCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C
*
5421643 ATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTG-TTGCGG
677 -TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GATTGCGG
*
5421707 CAGCACATGCCGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAG
732 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-C--C--
* * *
5421772 AGCATCGCCGAAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGG
792 A-C--CG--G-AGAACCTAACCGACGGCATTGGGGTTCCGACGATC--GGGGGGCCGGGGG
* *
5421833 GTGTGCGCACATGATGTGC-A-GCAGGTGGTGGTACTTGGCCCTTATATTGGCCACCTATCCCTC
1 GTGTGCGCACATGATGTGCGATG--GGTGCTAGTACTTGGCCCTTATATTGGCC-CCTATCCCTC
* * * * *
5421896 ACCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGTCAATA
63 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
5421961 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
128 GCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
5422026 TTTTTAGCTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
193 TTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** **
5422091 CCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAA
257 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAA
* ** *
5422156 AATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGAGCATTGTATGAATT
322 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5422221 TACAAGTCATAAAAATGGCATTGGCACGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACC
387 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
5422286 ATATCGATCCACGGCTTGCGCATCCCGTCGCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
452 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCTCGCCCACT
*
5422351 CATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
513 CATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
5422404 TCGGCCCGAG
Statistics
Matches: 5008, Mismatches: 564, Indels: 577
0.81 0.09 0.09
Matches are distributed among these distances:
845 8 0.00
846 496 0.10
847 43 0.01
848 4 0.00
849 97 0.02
850 261 0.05
851 172 0.03
852 30 0.01
853 72 0.01
854 5 0.00
855 6 0.00
856 3 0.00
857 102 0.02
858 6 0.00
859 3 0.00
860 3 0.00
861 3 0.00
862 87 0.02
863 1 0.00
864 2 0.00
865 5 0.00
866 2 0.00
867 2 0.00
869 2 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 1 0.00
874 2 0.00
876 49 0.01
877 3 0.00
879 95 0.02
880 1 0.00
881 21 0.00
882 7 0.00
883 79 0.02
884 421 0.08
885 81 0.02
886 7 0.00
887 219 0.04
888 95 0.02
889 9 0.00
890 401 0.08
891 71 0.01
892 6 0.00
893 7 0.00
894 1 0.00
895 11 0.00
896 7 0.00
897 5 0.00
898 15 0.00
899 16 0.00
900 115 0.02
901 181 0.04
902 48 0.01
903 551 0.11
904 362 0.07
905 16 0.00
906 172 0.03
907 203 0.04
908 181 0.04
909 122 0.02
910 3 0.00
912 4 0.00
913 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (844 bp):
GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCACTCATTTCGT
CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGGCATGCGA
CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCACCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG
Found at i:5421663 original size:26 final size:26
Alignment explanation
Indices: 5421627--5421682 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5421617 TCGGTTGACT
5421627 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
5421653 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5421679 TAAG
1 TAAG
5421683 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:5422745 original size:31 final size:32
Alignment explanation
Indices: 5422703--5422765 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
5422693 GGGACATTTT
5422703 TTTCAAAATGGTCACAAAATCTTGTACACTTC
1 TTTCAAAATGGTCACAAAATCTTGTACACTTC
5422735 TTTC-AAATGGTCACAAAATCTTGTACACTTC
1 TTTCAAAATGGTCACAAAATCTTGTACACTTC
5422766 GAGTTTTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (32 bp):
TTTCAAAATGGTCACAAAATCTTGTACACTTC
Found at i:5423302 original size:26 final size:26
Alignment explanation
Indices: 5423272--5423327 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
5423262 TGGGTTGACT
5423272 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5423298 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5423324 TAAG
1 TAAG
5423328 ATCGGATCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:5425115 original size:26 final size:26
Alignment explanation
Indices: 5425079--5425129 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5425069 GTTGACATAG
5425079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5425105 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5425130 GAATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5425652 original size:899 final size:898
Alignment explanation
Indices: 5422728--5428756 Score: 7711
Period size: 899 Copynumber: 6.7 Consensus size: 898
5422718 AAAATCTTGT
* *
5422728 ACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
5422793 TGCCAAAAAAAATACAAGGATCATGTCTACC-TGTTTGGGGCCAAAAATCCTTCTAAAAAAATTT
66 TG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * * * *
5422857 TAAAAAATCTCT-TACCGCAAAAAGTTTCAAAAATCGTGAAATATAGAAAATGAGTGGTCTTGCC
130 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5422921 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
***
5422986 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
260 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
5423051 CCCGTCTCTCTGGCCGGCATAGTGCCCACCCGTCGCCCGCCCGCTCGTTTGGTCGATTGGCTTAG
325 CCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
5423116 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACGATCGGTA
387 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * *
5423181 GCACGTAGAGGGGGACCAGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAAGCGC
452 GCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
5423246 CTGCACGCTTGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
517 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
* * * * * * *
5423311 TTCATTCCCAGTCTAAGATCGGATCGGACCAAGTGTTGCGACAGCACGTGATGGGCTCAGGCATG
582 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
5423376 TGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGG
647 TGCTGGTGTCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
** * * *
5423441 TAGCATTGGGGTTCCGGCGATC--GGGGGCCGGGGGAGTGTGAGCACATGATGT-ACGGTGGGTG
711 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGA-GATGGGTG
* * *
5423503 GTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAAGTCACACCCCCTTA
774 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
5423568 AAGAGCGTTTGAGATTTTACATGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGG
839 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5423628 ACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTACCTGAATATTTTTGTGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
5423693 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTTCAAAAAAATTT
66 TG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* *
5423758 TAAAAAATC-CTGAAACGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCC
130 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5423822 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5423887 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
260 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
5423952 CCCGTCTCTCTGGCCGCCGTAGTATCTGCCCGTCCGCCCGCCCGCTCGATTCATCGATTGGCTTA
325 CCCGTCTCTCTGGCCGGCGTAG----TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * ** *
5424017 GGCATATGGAGTTCATTCCCAGGCTAAGATTGGATCAGACCGAGGGTTATGGCAGTAGGATCGAC
386 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
** ** *
5424082 AGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCG
451 AGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
5424147 CCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGAATATGGA
516 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
* * * * * * *
5424212 GTTGATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCATATGCTGGGCTTGAGCAT
581 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
5424277 TTGCTGGTGTCGCATTTTTCTTCGTCGAGTCACCATCATCGGAGCATCACGGGAGAACCTGACCG
646 GTGCTGGTGTCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * *
5424342 ACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGAGGTGTGCGCACATGATGTGCA-ATGGC
710 ACGGCATTGGGGTTCCGACGATCG-GGGGGGCCGGGG-GGTGTGCGCACATGATGTG-AGATGGG
* * * *
5424406 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCTT
772 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
5424471 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
837 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
5424533 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
5424598 TCCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCGAAAATTCCTTCCAAAAAAATTT
66 T-GCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * *
5424663 TAAAAAATCT-TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCGTCTTACC
130 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5424727 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
5424792 GCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGA-CGAGTTGGCTTGCGC
260 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA--CGGCTTGCGC
* * * *
5424856 ATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
323 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
5424921 CATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATTGAAGGTTACAGTAGCAGGATCGACAG
388 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * *
5424986 CACGTAAAGGGGGACCCGATCGATCCCTGACTTACGCATCCCGCCCCTCCGGCCGACCGAGCGCC
453 CACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
5425051 CGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
518 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
* *
5425116 TCATTCCCAGTCT-AGAATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCACGGGCATG
583 TCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
5425180 TGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCCGGAGAACCTGACC-A
647 TGCTGGTGTCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
* ** * *
5425244 GCGGTATTGGCTTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGAGAT-GGTGC
711 -CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGC
* * *
5425308 TGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAA
775 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5425373 AGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
840 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * *
5425432 ACTCTTTTTTGAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTATGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
5425497 TGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
66 TGCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* ** * *
5425562 TAAAAAATCTC-GAACCGTAAAAATTTTTGAAAATCCTAAAAAATAGAAAACGAGTCGTCTTGCC
130 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5425626 ATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTAAGAAATTACAAGCCATAAAAATGGCATTT
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TT
* * *
5425691 GCGCAT--AGAAATATAAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
259 G-GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
5425754 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTTATCTTAG
323 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG-TTGGCTTAG
** ** * * * **
5425819 GCATACAAAGTTCATTCCCAGTCTAAGATGGGATCGGACTGAGGGTTGCAGCAGCAAGATCGGTA
387 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
5425884 GCAC-CAGAGGGGGACGCGATCGAT-CCTCGGCTTGCGCAAT-CCACCCCTCTAGCCGGTTGAGT
452 GCACGTAGAGGGGGACCCGACCGATCCCT-GGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGC
* * * * **
5425946 GGCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAG
515 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
* * * * *
5426011 AGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCAGGCA
580 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
5426076 TGTGCTGGTG-CTACATTTTTCTTCCCTGAGGCACCATC-ACCGAGCATCGTCGGAGAAGCTGAC
645 TGTGCTGGTGTC-GCATTTTTCTTCTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
5426139 CGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCTGGGGGGGTGTGCGCACATAATGTGCGATGGG
708 CGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGAGATGGG
*
5426204 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCT
772 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
5426269 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGTGG
837 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5426331 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * **
5426396 TGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAATGTTT
66 TG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * ** * *
5426461 TAAAAAATC-CTGAACAGCAAATAGTTTTGAAAATCATGAAAAATATAAAATGAGTCGTCTTGCC
130 TAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5426525 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * *
5426590 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCAT
260 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** * *
5426655 GCCGTGTCTCTGGCCGGCGTAATGCCCGATCGCCCGCCCGTTCGTTTCCTCGGTTGGCTTAGGCA
325 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
5426720 TACGAAGTTCATTCCCAG-CTAAGATC-GAACCGGACTGAGGGTTGTGGCAGTAGGATCGGCAGC
390 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
** * * * *
5426783 ACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGTAGCCCGCCCCTCAGGCCAGCTGAGCGCCC
454 ACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
5426848 GTACGTTCGTTTCGTGGGTTGACTTAAGCATATGGAGTTCATTCACAGTCTAAGCATATGGAGTT
519 GCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A-C----GGAGTT
* * * *
5426913 CATTCACAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
558 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* *
5426978 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
623 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC-TCGGGGCACCATCGTCGG
*
5427043 AGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGG-GT
687 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGT
*
5427106 GCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
751 GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
5427171 CCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATT
816 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5427236 AAAGTGTCTGAAATCGAG
881 AAAGTGTCTGAAATGGGG
*
5427254 ACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TCGC
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GC
* * ** ** * ** *
5427318 TTGCCAAAAAAAATACAAAGATCATTTCTACTTAGTTTGGGGCGAAAAAACCTTTCAAAAAAATT
65 ATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** *
5427383 TTAAAAAATC-CAAAACCGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
129 TTAAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
5427447 CGTGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGACT
194 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5427512 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCTACCCTATCGATCCATGGCTTGCGCA
259 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
5427577 TCTCGTCTCTCTAGTCGGCGTAGTGCCTGCCCGCCCACCTGCTCGTTTCGTCGGTTGGCTTAGGC
324 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
5427642 ATACGGAGTTCAATCCCAGTCTAAGGTCAAACCAGACTGAGGGTTGCGACAGTAGGATCGATAGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * ***
5427707 ACGAAGAGGAGGACCCGGCCGATCCCCT-ACTTGTGCATCCCATTCCTCTGGCCGGCTGAGCGCC
454 ACGTAGAGGGGGACCCGACCGAT-CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
5427771 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAG--T---C-TA---AG-
518 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
** * * *
5427826 --------A-TC--AGATCGGACC--A---AGGGTTATGGCATCACATGCTGGGCTCGAGCATTT
583 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * ***
5427875 ACTGGTGCCGCATTTTTCTTTCTCGGGGCACCATCGCCGGAGCATCGTTAGAGAACCTGACCGAC
648 GCTGGTGTCGCATTTTTC-TTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
5427940 GGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGAGTGCT
712 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGAGATGGGTGCT
* * * *
5428004 GTTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAGCTCACACCCCCTTAAA
776 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * **
5428069 GAGCATTTGTGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAAGG
841 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5428127 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTCTATGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
5428192 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACTTTCCAAAAAAATTT
66 TG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * ** * * *
5428257 T-AAAAATTTCTGAGCC-TCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCTTGC
130 TAAAAAATCTCTGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5428320 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATT
194 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
5428385 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
259 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
5428450 TCCCGTGTCTCTGGTCGGCGTAATGCCAGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGTTTAGCC
324 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * ** * *
5428514 ATACGGAGTTCATTCCCAAACTAAGATCGGACTGGACCAAGGGTCGCGGTAGCAGGATCGACAGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* *
5428579 ACGTAGAGGGGGACCTGACCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCC
454 ACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
5428644 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
519 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
*
5428709 AATTCCCAGTCTAAGAT--G---GGACCGAGGGTTGCGGCAGCACATGCTGGG
584 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
5428757 GCACCATCGC
Statistics
Matches: 4467, Mismatches: 553, Indels: 225
0.85 0.11 0.04
Matches are distributed among these distances:
871 18 0.00
872 265 0.06
873 464 0.10
874 2 0.00
875 1 0.00
877 11 0.00
878 2 0.00
879 2 0.00
880 1 0.00
881 2 0.00
889 2 0.00
890 2 0.00
891 3 0.00
892 2 0.00
893 26 0.01
896 2 0.00
897 92 0.02
898 381 0.09
899 904 0.20
900 120 0.03
901 243 0.05
902 656 0.15
903 1 0.00
904 6 0.00
905 437 0.10
906 33 0.01
907 4 0.00
915 3 0.00
916 1 0.00
918 3 0.00
919 1 0.00
920 1 0.00
922 1 0.00
923 496 0.11
924 223 0.05
925 56 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
AAAAAATCTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
GTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGTCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
Found at i:5426017 original size:26 final size:26
Alignment explanation
Indices: 5425977--5426029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5425967 GTTGACTTAG
* * *
5425977 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
5426003 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
5426029 G
1 G
5426030 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:5426908 original size:26 final size:26
Alignment explanation
Indices: 5426872--5426953 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
5426862 TGGGTTGACT
5426872 TAAGCATATGGAGTTCATTCACAGTC
1 TAAGCATATGGAGTTCATTCACAGTC
5426898 TAAGCATATGGAGTTCATTCACAGTC
1 TAAGCATATGGAGTTCATTCACAGTC
5426924 TAAGCATATGGAGTTCATTCACAGTC
1 TAAGCATATGGAGTTCATTCACAGTC
5426950 TAAG
1 TAAG
5426954 ATCGGACCAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCACAGTC
Found at i:5427635 original size:923 final size:925
Alignment explanation
Indices: 5425079--5427825 Score: 3178
Period size: 923 Copynumber: 3.0 Consensus size: 925
5425069 GTTGACATAG
* ** * * *
5425079 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT-AGAATCGGACCGGA
1 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGGTCATTCACAGTCTAAG-ATCGGACCAGA
* * * * * * * * * *
5425143 TCGAGGGTTGCGGCAGCACATGCTGGGCACGGGCATGTGCTGGTGTCGCATTTTTCTT-CGTCGG
65 CCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCCCT-GA
* * * * ** * *
5425207 GGCACCATCGTCGGATCATCGCCGGAGAACCTGACC-AGCGGTATTGGCTTTCC-GACGATTGGG
129 GGCACCATC-ACCGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCAG-CGATCGAG
* * * *
5425270 GGGGC-CGGGGGGTGTGCACACATGATGTGAGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCA
191 GGGGCTCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
5425333 CCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTT
256 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTT
* ** * * *
5425398 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACTCTTTTTTGAATTGGTCACAAAATCTTGT
321 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGTAGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
5425463 ACACTTCGAGTTTTTAGCTAAATATTTTTATGCATG-CAAACAAAAATACAAGGATCACGTCTAC
386 ACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAAGATCACGTCTAC
** * * * * * * * **
5425527 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAATTTTTG
450 CAAGTTTGGGGCCAAAAAACCTTTCAAAAAAATTTTAAAAAATC-CAAAACAGCAAATAGTTTCA
* *
5425591 AAAATCCTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
514 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * * * * * *
5425656 ATAGTAAGAAATTACAAGCCATAAAAATGGCATTTGCGCATAGAAATATAAAGATATGCCTAAAC
579 ATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * * * * *
5425721 CCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
644 CCACCTACCACCCTATCGATCCACGACTTGCGCATGCCGTCTCTCTAGCCGGCGTAATGCCCGAC
* * * ** * * ***
5425786 CGCCCGCCTGCTCGTTTCGTCGGTTTATCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATGGG
709 CGCCCACCCGCTCGTTTCCTCGG-TTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAA
* * * * ** * * * * * **
5425851 ATCGGACTGAGGGTTGC-AGCAGCAAGATCGGTAGCAC-CAGAGGGGGACGCGATCGATCCTCGG
773 ACCAGACTGAGGGTTGCGA-CAGTAGGATCGACAGCACGAAGAGGAGGACCCGACCGATCCCCTA
** * * * *
5425914 CTTGCGCAATCCACCCCTCTA-GCCGGTTGAGTGGCCGCACG--C---TC----GTT---TT--G
837 CTTGCGCAGCCCACCCCTC-AGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* *
5425964 --TA--G-G----TTGAC--T-TAG
901 CATACGGAGTTCATTCACAGTCTAA
* *
5425977 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGGTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGGTCATTCACAGTCTAAGATCGGACCAGAC
** *
5426042 CAAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTCTTCCCTGAGG
66 CAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCCCTGAGG
* * * *
5426107 CACCATCACCGAGCATCGTCGGAGAAGCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGC
131 CACCATCACCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGC
*
5426172 TGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 TCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5426237 CCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
261 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGC
*
5426302 CAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTGAAATGTAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
5426367 TCGAGTTTTTACCTGAATTTTTTTGTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAGTT
391 TCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTT
** ** ** **
5426432 TGGGGCCAAAACTCCTTTCAAAAATGTTTTAAAAAATCCTGAACAGCAAATAGTTTTGAAAATCA
456 TGGGGCCAAAAAACCTTTCAAAAAAATTTTAAAAAATCCAAAACAGCAAATAGTTTCAAAAATCA
* *
5426497 TGAAAAATATAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
521 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
5426562 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
586 GAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
5426627 CCACCCTATTGATCCACGACTTGCGCATGCCGTGTCTCTGGCCGGCGTAATGCCCGATCGCCCGC
651 CCACCCTATCGATCCACGACTTGCGCATGCCGTCTCTCTAGCCGGCGTAATGCCCGACCGCCCAC
* * * *
5426692 CCGTTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAG-CTAAGATCGAACCGGACT
716 CCGCTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAAACCAGACT
* * * * * *
5426756 GAGGGTTGTGGCAGTAGGATCGGCAGCAC-ACAGAGGGGGACCCGACCGAT-CCCTGGCTTGCGT
781 GAGGGTTGCGACAGTAGGATCGACAGCACGA-AGAGGAGGACCCGACCGATCCCCT-ACTTGCGC
* * * *
5426819 AGCCCGCCCCTCAGGCCAGCTGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAAGCATATGGA
844 AGCCCACCCCTCAGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGA
5426884 GTTCATTCACAGTCTAA
909 GTTCATTCACAGTCTAA
* ** *
5426901 GCATATGGAGTTCATTCAC-AGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCGGACCAGA
1 GCATACGGAGTTCATTC-CTAGTCTAAGCATACAGAGGTCATTCACAGTCTAAGATCGGACCAGA
* * * * *
5426965 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GG
65 CCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTC-CCTGA
* * * *
5427029 GGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGG
129 GGCACCATC-ACCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGG
* *
5427094 GGC-CGGGGGG-GTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
193 GGCTCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
5427157 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTCTACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGC
*
5427222 TGCCAGTAGCCATTAAAGTGTCTGAAATCG-AGACACTTTTTTCAAATGGTCATAAAATCTTGTA
323 TGCCAGTAGCCATTAAAGTGTCTGAAAT-GTAGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** *
5427286 CACTTCGAGTTTTTAGCTGAATTTTTTT-TCGCTTGCCAAAAAAAATACAAAGATCATTTCTACT
387 CACTTCGAGTTTTTACCTGAATTTTTTTGT-GCATGCCAAAAAAAATACAAAGATCACGTCTACC
* * * *
5427350 TAGTTTGGGGCGAAAAAACCTTTCAAAAAAATTTTAAAAAATCCAAAACCGTGAAA-AGTTTCAA
451 AAGTTTGGGGCCAAAAAACCTTTCAAAAAAATTTTAAAAAATCCAAAACAG-CAAATAGTTTCAA
* *
5427414 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGTTTAAGGGACCA
515 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* **
5427479 TTGTATGAATTTACAAGCCATAAAAATGGGACTGGCATGCAGAAATATGAAGATGTGCCTAAACC
580 TTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * * * * * *
5427544 CACCTGCTACCCTATCGATCCATGGCTTGCGCAT-CTCGTCTCTCTAGTCGGCGTAGTGCCTGCC
645 CACCTACCACCCTATCGATCCACGACTTGCGCATGC-CGTCTCTCTAGCCGGCGTAATGCCCGAC
* * * *
5427608 CGCCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGGTCAAA
709 CGCCCACCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAAA
* *
5427673 CCAGACTGAGGGTTGCGACAGTAGGATCGATAGCACGAAGAGGAGGACCCGGCCGATCCCCTACT
774 CCAGACTGAGGGTTGCGACAGTAGGATCGACAGCACGAAGAGGAGGACCCGACCGATCCCCTACT
* * ** * * *
5427738 TGTGCATCCCATTCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
839 TGCGCAGCCCACCCCTCAGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCAT
5427803 ACGGAGTTCATTCACAGTCTAA
904 ACGGAGTTCATTCACAGTCTAA
5427825 G
1 G
5427826 ATCAGATCGG
Statistics
Matches: 1596, Mismatches: 205, Indels: 70
0.85 0.11 0.04
Matches are distributed among these distances:
897 85 0.05
898 217 0.14
899 456 0.29
900 3 0.00
903 2 0.00
907 3 0.00
910 2 0.00
912 1 0.00
914 2 0.00
916 1 0.00
917 1 0.00
921 4 0.00
922 2 0.00
923 494 0.31
924 265 0.17
925 58 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (925 bp):
GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGGTCATTCACAGTCTAAGATCGGACCAGAC
CAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCCCTGAGG
CACCATCACCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGC
TCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGTAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTT
TGGGGCCAAAAAACCTTTCAAAAAAATTTTAAAAAATCCAAAACAGCAAATAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGACTTGCGCATGCCGTCTCTCTAGCCGGCGTAATGCCCGACCGCCCAC
CCGCTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAAACCAGACT
GAGGGTTGCGACAGTAGGATCGACAGCACGAAGAGGAGGACCCGACCGATCCCCTACTTGCGCAG
CCCACCCCTCAGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGT
TCATTCACAGTCTAA
Found at i:5428707 original size:26 final size:26
Alignment explanation
Indices: 5428671--5428723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5428661 GTTGACTTAG
*
5428671 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
5428697 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
5428723 G
1 G
5428724 ATGGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTAATTCCCAGTCTAA
Found at i:5431289 original size:26 final size:26
Alignment explanation
Indices: 5431253--5431304 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5431243 GTTGACTCAG
5431253 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* * *
5431279 GCATACGGAGTTCATTTCCTGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
5431305 CATCCGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:5432132 original size:26 final size:26
Alignment explanation
Indices: 5432095--5432152 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
5432085 CGTGGGTTAA
* *
5432095 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACGGAGTTCATTCCCAAT
*
5432122 CTAAGCATACGGAGTTTATTCCCAAT
1 CTAAGCATACGGAGTTCATTCCCAAT
5432148 CTAAG
1 CTAAG
5432153 ATTGGATCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAAT
Found at i:5432509 original size:836 final size:834
Alignment explanation
Indices: 5430884--5432567 Score: 2254
Period size: 836 Copynumber: 2.0 Consensus size: 834
5430874 TGAAAAATAA
* * * *
5430884 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAAATTGTGTGAATTTACAA
1 AAAACGAGTCGTCTTACCACGAAACTTCACATGAAGGCCTAAGGGAAAATTGTATGAATTTACAA
** *
5430949 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
* * * * * * *
5431014 TATCCACGGCTTGCACATCCCGTCTTTTTAGCCGACGTAGTGCCCGCTTGCCCGTTCGTTCGTTT
131 GATCCACGGCTTGCACATCCCATCTCTCTAGCCGACGTAGTGCCCGCTCGCCCGTCCGCTCGTTT
* * *
5431079 TCTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGCA
196 TCTCGGTTGGCTTAGGCATACGAAGCTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCA
* * * *
5431144 GTAGCAAGATCACCAGCACGCAGAGGGGGACCCGACTGATCCCCCGTTTGTGCATCCCGCCCCTC
261 GTAG--AGATCACCAGCACGCAGAGGGGGACACGACCGATCCCCCGCTTGCGCATCCCGCCCCTC
* * *
5431209 TGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTAATTCCCAG
324 TGGCCGACTGAGCGCCCACACCCTCGTTTCATGGGTTAACTAAGGCATACGGAGTTAATTCCCAG
* ** ** *
5431274 TCTAAGCATACGGAGTTCATTTCCTGTCTAACATCCGACCAGACCAAGGGTTGTGGTAGCACATG
389 TCTAAGCATACGGAGTTCATTCCCAATCTAACATCCGACCAGACCAAGGGTTACGGCAGCACATG
* * * *
5431339 CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCATCGGGGCACCATCGTCGGAGCATCACC
454 CTAGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCACCGGGGCACCA-C-T----GCAT--CC
*
5431404 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGA
511 GGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGA
*
5431469 TATGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCTAACCTTGAGAAC
576 TATGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAAC
* * *
5431534 TCACACCCCCCTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
641 TCACACCCCCCTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTA
*
5431599 AAATGGGTACATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTT
706 AAATGGGGACATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTT
* *
5431664 TTTGTGCATGCCAATAAAAATACATGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCG
771 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCG
* * **
5431728 AAAATGAGTCGTCTTACCACGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTACCACGAAACTTCACATGAAGGCCTAAGGGAAAATTGTATGAATTTACAA
*
5431793 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
* * * *
5431858 GATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCTGCTCGCCCG-CCAGCTCGCT
131 GATCCACGGCTTGCACATCCCATCTCTCTAGCCGACGTAGTGCCCGCTCGCCCGTCC-GCTCG-T
* ** **
5431922 AGTTTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATTGGACCAGA-TGAGGG
194 --TTTC-TCGGTTGGCTTAGGCATACGAAGCTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
*** * * *** *
5431986 TAGTGGCAGTAG-GATTGGCAGCATGCAGAGGGGGACACGGCCGATCCTTGGCTTGCGCATCTCG
256 T--T-GCAGTAGAGATCACCAGCACGCAGAGGGGGACACGACCGATCCCCCGCTTGCGCATCCCG
* * * ** * *
5432050 TCCCTCTGGCTGGCTCG-GCGCCTGCACCCTCGTTTCGTGGGTTAACTAAGGCATACGGAGTTCA
318 CCCCTCTGGCCGACT-GAGCGCCCACACCCTCGTTTCATGGGTTAACTAAGGCATACGGAGTTAA
* * * ** * *
5432114 TTCCTAGTCTAAGCATACGGAGTTTATTCCCAATCTAAGATTGGATCGGACCGAA-GGTTACGGC
382 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAACATCCGACCAGACC-AAGGGTTACGGC
* *
5432178 AGCACATGCTAGGCTCGGGCATGTGCTAGTGTTGCATTTTTCTTCGCCGGGGCACCA-T-CAT-C
446 AGCACATGCTAGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCACCGGGGCACCACTGCATCC
* *
5432240 GGAGAACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGA
511 GGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGA
* * * *
5432305 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAAC
576 TATGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAAC
* *
5432370 TCACA-CCCCCTAAAAGAGCACTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT
641 TCACACCCCCCT-AAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT
* * * *
5432434 AAAATGGGGACACTTTTT-TGAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATT
705 AAAATGGGGACA-TTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATT
*
5432498 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
769 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCC
5432563 G
834 G
5432564 AAAA
1 AAAA
5432568 AATTTTAAAA
Statistics
Matches: 734, Mismatches: 94, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
835 6 0.01
836 295 0.40
837 5 0.01
839 3 0.00
843 1 0.00
844 168 0.23
845 1 0.00
847 199 0.27
848 48 0.07
849 1 0.00
850 7 0.01
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (834 bp):
AAAACGAGTCGTCTTACCACGAAACTTCACATGAAGGCCTAAGGGAAAATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCACATCCCATCTCTCTAGCCGACGTAGTGCCCGCTCGCCCGTCCGCTCGTTT
TCTCGGTTGGCTTAGGCATACGAAGCTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCA
GTAGAGATCACCAGCACGCAGAGGGGGACACGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTG
GCCGACTGAGCGCCCACACCCTCGTTTCATGGGTTAACTAAGGCATACGGAGTTAATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAATCTAACATCCGACCAGACCAAGGGTTACGGCAGCACATGCT
AGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCACCGGGGCACCACTGCATCCGGAGAACCTG
ACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATATGCAATGG
GTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
CTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGAC
ATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCG
Found at i:5433200 original size:710 final size:712
Alignment explanation
Indices: 5432233--5433570 Score: 2126
Period size: 710 Copynumber: 1.9 Consensus size: 712
5432223 GCCGGGGCAC
* * *
5432233 CATCATCGGAGAACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCG
1 CATCATCGGAGAACCCGACCGGCGACATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCG
* *
5432298 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCT
66 CACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
5432363 TGAGAACTCACACCCCCTAAAAGAGCACTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTAAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
5432428 GTGTCTAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCT
196 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
5432493 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
261 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGGCCAAAAATC
* *
5432558 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAA
326 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAA
*
5432623 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAAATTGTGTGAATTTACAAGCCA
391 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCA
** *
5432688 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
456 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATC
** *
5432753 CACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATA-GT-GCCCGCCCGCCCGCTCGTTTTGTCGG
521 CACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATACGTCGCCCAACCGCCCGCTCGTTTCGTCGG
*
5432816 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCA
586 TTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCA
5432881 CATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCAGGGCACCATCATCGGAG
651 CATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCAGGGCACCATCATCGGAG
* * * * *
5432943 CATCATCGGAGAACCCGACCGGTGGCATTGGGGTTTCGGCGATC-GAGGGGCCGGGGGGGTGTGC
1 CATCATCGGAGAACCCGACCGGCGACATTGGGGTTCCGACGATCGGAGGGGCC-AGGGGGTGTGC
* * * *
5433007 GCACATGATGAGTGATTGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCCTATCTCTCATCAAAC
65 GCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAAC
* *
5433072 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTAAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * *
5433137 AAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATTTTGTACGCTTCGCGTTTTTAG
194 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
5433201 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGGCCAAAAA
259 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGGCCAAAAA
* * *
5433266 TCCTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
324 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAA
* * **
5433331 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGC
*
5433396 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACATTATCGA
454 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGA
* * *
5433461 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCAGCGTACCCGTCCGCCCAACCGCCCGCTTGTTTC
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATA--CGT-CGCCCAACCGCCCGCTCGTTTC
* *
5433526 GTCGGTTGGCTGAGGCATCCGGAGTTCATTCCTAGTCTAAGATCA
581 GTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
5433571 AACTAGAATG
Statistics
Matches: 568, Mismatches: 53, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
709 7 0.01
710 402 0.71
711 98 0.17
713 2 0.00
715 59 0.10
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (712 bp):
CATCATCGGAGAACCCGACCGGCGACATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCG
CACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTAAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGGCCAAAAATC
CTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATACGTCGCCCAACCGCCCGCTCGTTTCGTCGG
TTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCA
CATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCAGGGCACCATCATCGGAG
Found at i:5434565 original size:26 final size:26
Alignment explanation
Indices: 5434536--5434591 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
5434526 TGGGTTAGCT
* * *
5434536 TAAGCATAAGGAGTTCATTCCCGGTC
1 TAAGCATAAGAAGTTCATTACCAGTC
*
5434562 TAAGCATACGAAGTTCATTACCAGTC
1 TAAGCATAAGAAGTTCATTACCAGTC
5434588 TAAG
1 TAAG
5434592 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATAAGAAGTTCATTACCAGTC
Found at i:5435945 original size:716 final size:716
Alignment explanation
Indices: 5434565--5436048 Score: 2208
Period size: 716 Copynumber: 2.1 Consensus size: 716
5434555 CCCGGTCTAA
* *
5434565 GCATAC-GAAGTTCATTACCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACAG-AGTTCATT-CCAATCTAAGATCGGACA-GACCGAGGGTTGCGACAGCACATGCTGG
** * *
5434629 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCAGGGCACCATCGCGGGAGCATCGTCAGAG
63 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGCGAGAGCATCGCCAGAG
** *
5434694 AACCTGACTGGCGGCATTGGGGTTCCAACGATCGGGGGGCCCGGGGGGGATGTGCGCACATAATG
128 AACCTGACCAGCGGCATTAGGGTTCCAACGATCGGGGGG-CCGGGGGGGATGTGCGCACATAATG
*
5434759 TGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
5434824 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTCCTCCCAGTAGCAATTAAAGTGTCTGAA
*
5434889 ACGGGGACACTTTTTTCAAATGGTCACAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
322 ACGGGGACACTTTTTTCAAATGGTCAAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* *
5434954 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
387 ATGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
5435019 AATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGACT
452 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGACT
* * * *
5435084 TGCCATGAAACTTCACGTGCAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGC
* * *
5435149 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCATGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5435214 GCATCCCGCCTCTCTGGCCAGCGCGGTGCCTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGATTGG
647 GCATCCCGCCTCTCTGGCCAGCGCAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGG
5435279 CTTAG
712 CTTAG
* *
5435284 GCATACGGGGTTCATTCACAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACAGAGTTCATTC-CAATCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
5435349 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATC-AGAGCATCGCC-GAA
64 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATC-GCGAGAGCATCGCCAG-A
** * * *
5435412 GAACCTGACCAGCGGCATTAGGGTTCCGGCGATC-GGGGG-C-GGGGGGTTGTGTGCACATGATG
127 GAACCTGACCAGCGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGGATGTGCGCACATAATG
* ** * *
5435474 TGCAATGGGTGCTGGTACTTGGCTTTTATATTGGCGCCCTATCCCTTATCAAACCTCAAGAACTC
192 TGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
5435539 ACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCAATTAAAGTGTCTGAA
257 ACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTCCTCCCAGTAGCAATTAAAGTGTCTGAA
* * * *
5435604 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ACGGGGACACTTTTTTCAAATGGTC-AAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* *
5435669 TATGCATGGCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
386 TATGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
5435734 AAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
451 AAATTTAAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGA
*
5435798 CTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATG
* * *
5435863 GTATTGGCATGTCGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
5435928 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTTGTTTCATCGGTT
645 GCGCATCCCGCCTCTCTGGCCAGCGCAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATT
5435993 GGCTTAG
710 GGCTTAG
* * *
5436000 GCATACAGAGTTCATTCCAGTCTAAGATCAGATTAGACCGAGGGTTGCG
1 GCATACAGAGTTCATTCCAATCTAAGATCGGA-CAGACCGAGGGTTGCG
5436049 GTAGCAGGAT
Statistics
Matches: 688, Mismatches: 70, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
715 191 0.28
716 350 0.51
718 7 0.01
719 136 0.20
720 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (716 bp):
GCATACAGAGTTCATTCCAATCTAAGATCGGACAGACCGAGGGTTGCGACAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGCGAGAGCATCGCCAGAGAAC
CTGACCAGCGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGGATGTGCGCACATAATGTGCA
ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
ACCCTTAAAGAGCATTTGAGATTTTACAAGTTTCCTCCCAGTAGCAATTAAAGTGTCTGAAACGG
GGACACTTTTTTCAAATGGTCAAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGC
ATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGACTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCCAGCGCAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTA
G
Found at i:5437067 original size:26 final size:26
Alignment explanation
Indices: 5437038--5437087 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
5437028 GTTGAGTTAG
5437038 GCATACAG-AGTTCATTCCCAGTCTCA
1 GCATA-AGAAGTTCATTCCCAGTCTCA
*
5437064 GCATATGAAGTTCATTCCCAGTCT
1 GCATAAGAAGTTCATTCCCAGTCT
5437088 AAGATCGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTCA
Found at i:5438852 original size:26 final size:26
Alignment explanation
Indices: 5438812--5438862 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5438802 TGACTTAGGC
*
5438812 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
* *
5438838 ATACAGAGTTGATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5438863 ATCAGATCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:5439855 original size:897 final size:895
Alignment explanation
Indices: 5437994--5441386 Score: 4579
Period size: 897 Copynumber: 3.8 Consensus size: 895
5437984 TAGCACGTGA
* ** * * *
5437994 TGGGCTC-GAGCATGTGCTAGTGCTGCATTTTTCTTCACCGAGGCCCCATCGTCGGAGCATCGTC
1 TGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTC
* * * **
5438058 GGAGAACCTGATCGGCGGTATTGGGGATCCGACGATCAAGGGGG-CTGGGGGGGTGTGCGCACAT
65 GGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTC-GGGGGGGTGTGCGCACAT
* **
5438122 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
129 GATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * * *
5438187 ACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTTCTTCCAGTAGCCATTAAAGTGTC
194 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTC
* *
5438252 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGATGAATT
259 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
5438317 TTTTTGTGCATGCCATCAAAAATACAGGGATCACGTCTACCATGTTTGGGG-CAAAAATCCTTCC
324 GTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * * * *
5438381 GAAAAAATTTAAAAAAATCCAGAACCGCAAAAAGTTTCCAAAATCGTCAAAAATAGAAAACGAGT
388 GAAAAAATTT-AAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
* * *
5438446 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAA
452 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5438511 ATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
517 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5438576 CTTGCACGTCCCATCTCTCTGGCCTGTGTAGTGCCCGCCCGCCTGCCTGGCCGCTCGTTTCGTCG
582 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCC---CCGCTCGTTTCGTCG
* * * * * *
5438641 GTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAGACC-ACTGGTTGCAGTAG
640 GTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGA-GGGTTGCAGCAA
* ** * * *
5438705 TAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGT
704 CAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGT
5438770 CGGCTGAGCGCCCGCACGCTCGTTTCGAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
769 CGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
5438834 AAGTATACAGAGTTGATTCCTAGTCTAAGATCAGATCGAACTGAGGGTTGCAACAGCATATGT
833 AAGTATACGGAGTTGATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAACAGCATATGT
5438897 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCG
1 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCG
* *
5438962 GAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGCGGTGTGCGCACCTGA
66 GAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGA
* * *
5439027 TGTGCAATGGGCGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCGAACCTCAAGAAC
131 TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * *
5439092 TCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCTTTAAGGTGTCTG
196 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTG
*
5439157 AAATGGGGACACTTTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT
261 AAATGGGGACAC---TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** *
5439222 TGTTTTGTGCATGCCAAAAATAATACATTGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTC
323 TGTTTTGTGCATGCCAAAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* ** *
5439287 CTAAAAAATTTAAAAAATCCCGAATGGTAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGT
387 CGAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
* *
5439352 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
452 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
5439417 ATGTCATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCACTCTATCGATGCACGG
517 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5439482 CTTGCGCATCCTGTCACTCTGGCCGACGTAGTGCCCGCCCG-CCCGCTCGTTTTGTCGATTGGCT
582 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCT
*
5439546 TAGGCATACAGAGTTCATTCCCAG-CTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCG
647 TAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCG
* * *
5439610 ACAGCATGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCAACCCACCCCTCTGGTCGGCTGAG
712 ACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAG
*
5439675 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACG
777 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACG
* *
5439740 GAGTTGATTTCTAGTCTAAGATCAGACCGGACTGAGGTTTGCAACAGCATATGT
842 GAGTTGATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAACAGCATATGT
*
5439794 TGGGCTCAGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCG
1 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCG
* *
5439859 GAGAACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACCTGA
66 GAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGA
* * * *
5439924 TGTGCGATGGGCACTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCACCGAACCTCAAGAAC
131 TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * *
5439989 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCTTTAAGGTGTCTA
196 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTG
*
5440054 AAATGGGGACACTTTTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
261 AAATGGGGACAC----TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
5440119 TTTTTTTGTGCATGCCAAAAAATATACAAGGATCATGGCTACCAAGTTTGGGGCCAAAACTCCTT
322 TTGTTTTGTGCATGCCAAAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* * * *
5440184 CTGAGAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAATTATGAAAAATAGAAAACGA
386 CCGA-AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
* * *
5440248 GTCGTTTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAA
450 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
5440313 AAATGGCCTTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
515 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
5440378 GGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTATCCGCCCGGCCGCCCGCATGCTCGTTTCGT
580 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG--T--GCCCGCCCGCCC-C--GCTCGTTTCGT
* ** * * **
5440443 CGGTTGGCTTAGGCATACAGAGTTAATTCCAAGTCTAAGATTGGATCAGACTGAGGGTTGTGGCA
638 CGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCA
* * ** *
5440508 GTC-GGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTG
703 -ACAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTG
* * *
5440572 GTCGGCTGGGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTC
767 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * **
5440637 TAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCACATAC
832 TAAGTATACGGAGTTGATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAACAGCATATGT
* * ** ** *
5440701 TCGGCTC-GAGCATGTGCTGCTGCTGCATTTTTCTTTGCCGGGG---C--C--C----CATCGTT
1 TGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTC
* * *
5440754 GGAGAACCTGA-CTGGCGGCATTGGGGTTCCTGCGATCGGGGGGGCCGGGGGGGTGTGCACACAT
65 GGAGAACCTGATC-GGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACAT
* * * * *
5440818 GATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
129 GATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * *
5440883 ACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTC
194 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTC
* * *
5440948 TGAAATGGGGGCACTTTTTTAAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT
259 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
5441013 GTTTTGCGCGTGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
324 GTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
*
5441078 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
388 GAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
* * * *
5441143 TGACTTGCCATGAAACTTCACGTGCAA-GCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAAA
452 CGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
5441207 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATG
516 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** * *
5441272 GTTTGCGCATCCCGTTTCTCTGGCCGGCGCGGTGCCTGCTCG-CCCGCTCGTTTCGTCGGTTGGC
581 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGC
** * *
5441336 TTAGGCATATGGGGTTCATTCACAA-TCTAAGAT-TGAACCAGACCGAGGGTT
646 TTAGGCATACAGAGTTCATTC-CAAGTCTAAGATCAG-ACCAGACCGAGGGTT
5441387 ACGACAGCAC
Statistics
Matches: 2222, Mismatches: 238, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
884 1 0.00
885 57 0.03
886 3 0.00
887 1 0.00
888 2 0.00
889 6 0.00
891 5 0.00
892 131 0.06
893 168 0.08
894 2 0.00
895 1 0.00
896 191 0.09
897 467 0.21
898 319 0.14
899 30 0.01
900 2 0.00
901 1 0.00
902 10 0.00
903 245 0.11
904 5 0.00
905 3 0.00
906 324 0.15
907 247 0.11
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCG
GAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
TTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCGACAG
CATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGT
TGATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAACAGCATATGT
Found at i:5440644 original size:26 final size:26
Alignment explanation
Indices: 5440614--5440666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5440604 GTTGACTTAG
*
5440614 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5440640 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5440666 G
1 G
5440667 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5444864 original size:26 final size:26
Alignment explanation
Indices: 5444828--5444877 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5444818 GACTTAGGCA
* *
5444828 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
5444854 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
5444878 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:5445748 original size:26 final size:26
Alignment explanation
Indices: 5445709--5445758 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5445699 GACTTAGGCG
5445709 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
5445735 TACGGAGTTGATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5445759 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:5448370 original size:26 final size:26
Alignment explanation
Indices: 5448338--5448390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5448328 GTTGACTTAG
* * *
5448338 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
5448364 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
5448390 G
1 G
5448391 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:5449263 original size:26 final size:26
Alignment explanation
Indices: 5449233--5449285 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5449223 TTTGATTTAG
5449233 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5449259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5449285 G
1 G
5449286 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5449845 original size:878 final size:877
Alignment explanation
Indices: 5447620--5450589 Score: 3851
Period size: 878 Copynumber: 3.4 Consensus size: 877
5447610 GACCGGTGGA
* * * * *
5447620 ATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTACGAACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5447685 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
5447750 CATTTTAGATTTTGCAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5447815 CAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA-TTTTTTGTGCATGCCAACAAA
* * *
5447880 AATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAATTCT
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCC
* * * * *
5447945 GAAACTGTAAACAGTGTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCA
325 CAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
5448010 CGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCAGGCAAAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATTGCATTGGCACGCAAAAA
* * * *
5448075 CATGAAGATGTGTCTAAACCCACCTACCACACTATCGATCCACGCCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*** * *
5448140 GGCAAACGTAGTG-C-CCG---CTCGTTTCGTCGGTTGGCTTAGGCATATGGAGCTCATTCCCAG
520 GGCCGGCGTAGTGCCGCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
5448200 TCTAAGATCAGACTGGA-CTGAGGGTTACGGCAGTAGGATTGGCGGCATGCAGTGGGGGACCCAA
585 TCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGA
* * * *
5448264 CCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGG
649 CCGATCCACGACTTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGT
** * * * *
5448329 TTGACTTAGGCATATGGATTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATC
713 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATC
* * * * *
5448394 AGACTGGA-TCGAGGGTTCCGACAGCACATGCTGGGCTC-GGGCATGTGCTGGTGTCACATTTTT
778 GGAC-GGACT-GAGGGTTGCGGCAGCACATGCTGGGCCCTAGGCATGTGCT-GTGTCACATTTTT
*
5448457 CTTCGTCGGGGCACCATCGCGGGAGCAACGCCGGAGAACCTGACCGACGG
840 CTTCGTCGGGGCACCAT-----------CGCC-GAGAACCTGACCGACAG
* *
5448507 CATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGG-GTGCGCGCAATTGATGTGCGATGGGTGCT
1 -ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCAC-A-TGATGTGCGATGGGTGCT
* ** * * *
5448571 AGTACTTGGCCCTTATATTGGCCCTATATCCCTCATCAAACCTTGAGAACTCACACCTCCTTACA
63 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
5448636 GAGCATTTGA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
128 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5448700 TTTCAAAAGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTAAAATTTTTT-TGCATGCCAAA
193 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAAC
* * ** * *
5448764 AAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCTTTTTGAAAAAATTTAAAAAAA
257 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAT
* * * * *
5448829 TCCCGAACCGTAAAAAGTTTCATAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCA-GAAAAC
322 TCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAAC
* *
5448893 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAT-CATTGGCACAC
386 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT-TGCATTGGCACGC
*
5448957 AAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
450 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
5449022 TCTCTGGCCGGCGTAGTGCCTAGCCGCCCACTCGTTCCGTCGGTTGGCTTAGTCATACGGAGTTC
515 TCTCTGGCCGGCGTAGTGCC--GCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** **
5449087 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGG
577 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGG
* * * * * *
5449152 GACCTGACCGATCCCCAACTTGCGCATCCCACCCCTTTGGCCGGCTGAACGCCCGTACGCTCGTT
642 GACCCGACCGATCCACGACTTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATT
* *
5449217 TCATGGTTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
706 TCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTC
* * *
5449282 TAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGGCCCTTGTCATGTGCTAGTGCCAC
771 TAAGATCGGA-CGGACTGAGGGTTGCGGCAGCACATGCTGGGCCCTAGGCATGTGCT-GTGTCAC
5449347 ATTTTTCTTCGTCGGGGCACCATCGCCG-G-ACC-GA-CGAC-G
834 ATTTTTCTTCGTCGGGGCACCATCGCCGAGAACCTGACCGACAG
* * *
5449386 -TTGGGGTTTCGGCGATCGAGGGGGCCGGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
5449450 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
5449515 CATTTGAGATTTTACAGGGTCGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGACATTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5449580 CAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TTTTTGTGCATGCCAACAAA
* * * *
5449645 AATAAAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAATTCC
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCC
* *
5449710 CTAACTGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCA
325 CAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** * * * *
5449775 CGTGAAGGCTTAAGGGACCATTGTATGAATTTGTAGGCCATAAAAATTGCATTGGCATGTAGATA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATTGCATTGGCACGCAAAAA
* * *
5449840 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATTCCGTCACTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
5449905 GGTCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
520 GGCCGGCGTAGTG-CCG-CCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
5449970 CAGTCTAAGATCAGACCAGATTGAGGGCTGTGGCAGCAGGATCGGCAGCTTGCAGAGGAGGACCC
582 CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCC
* * * * * * * *
5450035 GGCCGATCAACGCCTTCCACATCCCTCCCTTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
647 GACCGATCCACGACTTGCGCATCCCCCCCTT-TGGCCGGCTGAGCGCCCGCACGCTCATTTCATG
* *
5450100 GTTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAGGCATAAGGAGTTCATTCCCAGTCTAAGA
711 GTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGA
* * * * *
5450165 TCGGACCGGTCCGAGGGTTGCAGCAGCACATG-TTGG-CCTCAGGCATGTGCCTGTGTCAGATTT
776 TCGGA-CGGACTGAGGGTTGCGGCAGCACATGCTGGGCCCT-AGGCATGTG-CTGTGTCACATTT
* *
5450228 TTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGTAGAACCTGACCAACAG
838 TTCTTCGTCG-GG-----GCA-C----CATCGCCG-AGAACCTGACCGACAG
* * *
5450280 CATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
1 -ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
5450345 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5450410 GCTTTTCAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5450475 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT-TTTGTGCATGCCAACAA
* * *
5450540 AAAGACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCC-AAAA
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
5450590 CTTCACGTTA
Statistics
Matches: 1821, Mismatches: 213, Indels: 89
0.86 0.10 0.04
Matches are distributed among these distances:
876 93 0.05
877 161 0.09
878 494 0.27
879 4 0.00
880 4 0.00
881 2 0.00
882 3 0.00
883 3 0.00
884 2 0.00
885 4 0.00
887 257 0.14
888 138 0.08
889 88 0.05
890 1 0.00
891 6 0.00
892 2 0.00
893 3 0.00
894 1 0.00
895 237 0.13
896 318 0.17
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCCC
AAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATTGCATTGGCACGCAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCGCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACC
GATCCACGACTTGCGCATCCCCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGTTTG
ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGA
CGGACTGAGGGTTGCGGCAGCACATGCTGGGCCCTAGGCATGTGCTGTGTCACATTTTTCTTCGT
CGGGGCACCATCGCCGAGAACCTGACCGACAG
Found at i:5450147 original size:26 final size:26
Alignment explanation
Indices: 5450108--5450161 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
5450098 TGGTTTGACT
5450108 TAGGCATACAGAGTTAATTCCCAGTC
1 TAGGCATACAGAGTTAATTCCCAGTC
*
5450134 TAGGCATA-AGGAGTTCATTCCCAGTC
1 TAGGCATACA-GAGTTAATTCCCAGTC
5450160 TA
1 TA
5450162 AGATCGGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTAATTCCCAGTC
Found at i:5450981 original size:26 final size:26
Alignment explanation
Indices: 5450942--5450991 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5450932 GACTTAGGCA
*
5450942 TACAGAGTTGATTCCCAGTCTAAGCT
1 TACAGAGTTCATTCCCAGTCTAAGCT
*
5450968 TACAGATTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
5450992 ATCGTTTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCT
Found at i:5451824 original size:26 final size:26
Alignment explanation
Indices: 5451787--5451839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5451777 GTTGACTTAG
* * *
5451787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCAAGTCTAA
5451813 GCATACGAAGTTAATTCCAAGTCTAA
1 GCATACGAAGTTAATTCCAAGTCTAA
5451839 G
1 G
5451840 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCAAGTCTAA
Found at i:5454665 original size:26 final size:26
Alignment explanation
Indices: 5454629--5454681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5454619 GTTGACTTAG
5454629 GCATACGGAGTT-GATTCCCAGTCTAA
1 GCATACGGAGTTCG-TTCCCAGTCTAA
*
5454655 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCGTTCCCAGTCTAA
5454681 G
1 G
5454682 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCGTTCCCAGTCTAA
Found at i:5455554 original size:901 final size:899
Alignment explanation
Indices: 5452853--5463372 Score: 12942
Period size: 902 Copynumber: 11.8 Consensus size: 899
5452843 CCAAGTTTGG
* ** * ** *
5452853 GTTCATTCCCAGTGTAAGCATACATAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * *
5452918 CAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACA-TTTTC--C-T----------TCAC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * * * *
5452969 CGAAACATCACCGGAGAACCTGATCAGTGGCATTGGGGTTCCGACGATCGGGGGGG-CTGGGGGT
131 CGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* *
5453033 GTGCGCGCATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
196 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
5453098 AACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCA
261 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
5453163 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
326 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* **
5453228 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCCTGTTTGGGGCCAA
391 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
5453293 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAATGTTTCAAAAATCATGGAAAATA
456 AACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
5453358 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACA
521 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
5453423 AGCCATAAAAATGGCATTGGC-T-CAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
586 AGCCATAAAAATGGCATTGGCATGC-AA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * **
5453486 ATCGATCCACGGTTTACGTATCCCGTCTTTCTGGCCGACGTAGTTCCTACCCGCCCGTACGCCCG
649 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG----TGCCCGCCCGCCCGCCCG
* * * * * *
5453551 CTTGTTTCATCGGTTGGCTTAGGCATACGGAATTCATTCTCAGTCTAAGATCAGACCAGATCAAG
710 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* ** * * * * *
5453616 GGTTACGGTAGTAGGATCGGTATCATGCAGAGGGGG-CCAGGCCGATCCCCGGCTTGCGCATCCC
775 GGTTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* * * * * *
5453680 ACTCCTCTAGCCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
840 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
5453740 GTTCATTCCCAGTCTAAGCACACGAAGTTCATTCCCTGTCTAAAATCAGA-TCGGACCGAGGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTT
*** * * * *
5453804 GCAATAGCACAGGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCG
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
5453869 CCGGAGTATCGCCGGAGAACCTGA-CCGATGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGG
130 CCGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * * * *
5453933 GTGTGCACATATGATGTGCAAAGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
194 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
5453998 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGC
259 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5454063 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGTT
324 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
5454128 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
389 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * **
5454193 AAAACTCCGTCTGAGAAAATTTTAACAAATCCCGAACCGTAGAAAGTTTTGAAAATCGTGAAAAA
454 AAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * **
5454258 T-GAAAACGAGTTGTTTTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
519 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
5454322 CAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTACCTAAATCCACCTACCACCCT
584 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
5454387 ACCGATCCACTGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGACCGCCCGTCCGCTCG
649 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * * * * * *
5454452 TTTCGTCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCGGA-TGGCATTGGGGGT
714 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ATCGAGGGT
* ** * * *
5454516 TGCGACTA-CAAAATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGC
778 TGC-AATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC
* * * *
5454580 CCCTCTGGCCGGCTGAGCTCCCGCTCGCTCGTTTCATTGGTTGACTTAGGCATACGGA
842 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
5454638 GTTGATTCCCAGTCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* *
5454703 CGGCAGCACATG-TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-CCTGGGGCACCATCG
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCG
* * ** * * * *
5454766 CCGGAGCATTGCCGGAGAACCTTACTAGCTGTATTGGGGTTCCGACGATCAGAGGGGCCGGGCGG
130 CCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GG
* ** * * *
5454831 GGTGGTGTGCACATGATGTGTAATGGGTGCTGGTACTTGGCCCTTATACTAGCCACCTATCCCTC
193 GGT-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5454896 ATCAAACCTCGAGAACTCACACCCCCTGAAAAAGTATTTGAGATTTTACAGGTTTGCTGCCAGTA
257 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
5454961 GCCATTAAAGTGCCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAG
322 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
5455026 TTTTTGGCTTAATTTTTTTGTCCATGCCAACAAAAGTACAAGTATCACGTCTACCAAGTTTGGGT
387 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * ** *
5455091 CTAAAACACCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCATGAAA
452 CCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
5455156 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATT
517 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5455221 TACAAGCCATAAAAAAGGCATTGGCATGCAAAAATATGAAGATGTTCCTAAACCCACCTACCACC
582 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
5455286 CTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCAACGTAATGCCCGCCCGCGCGCCCGCT
647 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* **
5455351 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGAT
712 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
* * * * * * *
5455416 TTGCAATAGCAGGATCGGTAGCACGCAGAGGGGGACTCGGTCGATCCCTGACTTGCACATCCCAC
777 TTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC
* ** * * *
5455481 CCCTCTGGTCTACTGAACGCCCGCACGCTTGTTTCGTGAGTTGACTTAGGCATAC---
842 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
5455536 G---A-----AG--T-----T-C--A--T--TT-CCAGTCTAAGATCGGA-TGGACCGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * *
5455577 CGGCAGCACATGCTGGGCTTGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * ** *
5455642 CGGAGCATCGTCGAAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGG
131 CGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG
*
5455707 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATC
195 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
5455772 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCC
260 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5455837 ATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
325 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* ** * * *
5455902 TTAGGTGAATTTTTTTGTATATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGTCCA
390 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
5455967 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATTAAAAAT
455 AAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
5456032 AGAAAATGAGTTGTCTTGCCATTAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTAC
520 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*** * *
5456097 AAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGAGCCTAAACCCACCCACCACCCTA
585 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
5456162 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCTGCTCGT
650 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * *
5456223 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGGA-CTGAGGGTT
715 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTT
*** * ** * * * * * * *
5456287 TTGACAGCAAAATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCAGGCTTACGCTTCCTGCAC
779 GCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
5456352 CTCTGGTCGGCTGAGCGCTCGCTCGCTCGTTCCATGGGTTGACTTAGGCATACGGA
844 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** *
5456408 GTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * * *
5456473 CAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCGCCATCTC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * *
5456538 CGAAGCATCGTCGGAGAACCTGA-CCGACGGCATTAGGGTTCCTG-CGATCGGGGGGGCCGGGGG
131 CGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGG
5456601 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCAT
194 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* **
5456665 CAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTATTGGTTTGCTGCCAGTAGC
259 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5456730 CATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTT
324 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
5456795 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGG-C
389 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * **
5456859 AAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAATGTTTTGAAAATCGTGAAAA
454 AAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
5456924 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTT
518 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5456989 ACAAGCCATAAAAATGGCATTTGCA--CATAGAAATATGAATATGTGCCTAAACACACCTACCAC
583 ACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCAC
*
5457052 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTTCGCCTGCCCGC
646 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGC
* * * * * * * *
5457117 CCGCTCGTTTCATCGGTTGGCTTAGGCTTACGAAGTTCATTCCTAGTCCAAGATCGGATCAGA-C
707 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
* * * * * * * * *
5457181 TGAGGGTTGCGACAGTAGGATCGACAGCACGTAGAGGGGGACCTGGTCAATCCCCGGCTTACGCA
772 -GAGGGTTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
** * *
5457246 TCCCGTACCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTGGTAGGGTTGACTTAGGCATATGGA
836 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACGGA
* * * * * *
5457311 GTTCATT-CCATTCTAAGCATACGGAGTTCATTCCCAGACTAAGATTGGACCGGACCAAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * *
5457375 CGACAGCACATGCTGGGCCCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * * * *
5457440 TGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCAATCGGGGGGGCCAGGGGGT
131 CGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
*
5457505 GTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
196 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * *
5457570 AACCTCGAGAACTCACACACCTTTAAGGAGCATTTAAGGTTTTACAGGTTTGCTGCCAGTAGCCA
261 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
5457635 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACACAATCTTGTACATTTCGAGTTTT
326 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
5457700 TGGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGG----
391 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** *
5457761 -------T--G------------AAAATCCCGGACTGTAAAAAGTTTTGAAAATCTTGAAAAATA
456 AACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
5457805 GAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
521 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
5457870 AGCCATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCTCAACCTACCTACCACCCTAT
586 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
5457935 CGATCCACGGCTTACGCATCTCGTCTCTCTAGCCGACGTAGTGCTCGCCCGCCCACCCGCCCGCT
651 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCGCCCGCT
* * *
5458000 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACCAGATCGAGGG
712 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
*** * * * * * * * *
5458065 TTGCGGCAGCAGGATCAGCAGCATGCAGAAGGGGACCTGACCAATCCCCAGCTTGCGCATCCAGC
777 TTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC
* * * * *
5458130 CCCTCTAGCCGACTGAGCGTCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
842 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
5458188 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGTCAGAGGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTT
* * * * *
5458252 GCGGTAGCACATGCTGGGCACGGACATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCAT--
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* *
5458315 ------CA---CCGGAGAACCTGACCGGCGGCATTGGGTTTCCGACGATCGGGGGGGCCGTGGGG
130 CCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGG
* *
5458371 GGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCA
193 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
5458436 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAG
258 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
5458501 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
323 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5458566 TTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
388 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
5458631 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAGTTTTGAAAATCGTGAAAA
453 CAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
5458696 ATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGA-AATTTGTATGAATT
518 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATT
* * * * *
5458760 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGCCAAAACCAACCTACCACC
582 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * *
5458825 CTATCGATCGACGGCTTGCGCATCCTGTTTCTCTGGCCGACGTAGTGCCTACCCGTCCGCCAGCT
647 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* *
5458890 CGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGG
712 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGG
* * * * * * *
5458954 GTTGCTACAGCAAGATCGACAGCACACAGAGGGTGACCCGGTCGATCCCCGGCTTGCGCATCCCG
776 GTTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * * * *
5459019 CCCCTCTGGCTGGATCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGA
841 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
5459078 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAATATCGGA-TCAGATCGAGGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTT
* * * * * * *
5459142 ACAGCAGTACATGCTGGGCTCGAGCATGTGCTGGAGCCGCATTTTTCTTCGTTGAGGCACCATCG
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * *
5459207 TCGGAGCATCGCTGGAGAACCTGACCGGCGGCAATGGGGTTCAGACGATCGGGGGGGCCGGGGGG
130 CCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
*
5459272 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATC
195 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
**
5459337 AAACCTCGAGAACTCACGTCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
260 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
5459402 ATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
325 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
5459467 TTAGCTGAACTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCATA-TTTGGGGCC
390 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCC
* * **
5459531 AAAACTCCTTCCGAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAA
454 AAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * * * * *
5459596 TAGAAAACGAGTTGTCTTGCCTTGAAATTTCACGTGAAGGCTAAAAGGAACATTGTATGAATTTA
519 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** * * *
5459661 CAAGTCATAAAAATGCCATTGGCACACAAAAACATGAAGATGTCCCTAAACCCACCTACCACCGT
584 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * ** * *
5459726 ATCGATCCACGGCTTGTGCATTCCGTCTCTCTGATCGGCATAGTGCCCGCCCGCCTGCCCGCCCG
649 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCCG
* * * * * *
5459791 TTCGTTTCATCTGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGAATCGGG
710 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * ** * *
5459856 GGTTGCGATAGCAGGATTGGCAGCACGCAGAGGGGGACCCAACCAATCCCCGGCTTGTGCATCCC
775 GGTTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* * *
5459921 GCTCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGGA
840 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
5459981 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * ** *
5460046 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCACTTTTCTTCACCGAGGCACCATCGC
66 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * *
5460111 CGGAGCATTGTCGGGGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGG
131 CGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * * *
5460175 TGTGCG-AGTATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCTCCTTATCCCTCAT
195 TGTGCGCA-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
5460239 CAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGGCAATAGC
259 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * *
5460304 CATTAAAGTTTATGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACATCAAGTT
324 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
5460369 TTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-C
389 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
5460433 AAAAAATCCTTTCGAAAAAATTTAAAAAAATCCCAAACCGTAACAAGTTTCAAAAATCGTGAAAA
454 AAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
5460498 A-AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
518 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * *
5460562 ACAAGCCATAACAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCC
583 ACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
5460627 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTCGTCGGCATAGTGCCCACCTGCCCGCCCGCCC
648 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCC
* * * * ** * *
5460692 GCTCGTTTCGTCGGTTGCCTTAGGAATACGAAGTTCATTCCCTA-TCTAAGATCAGATCAAACCC
709 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGATCG
* ** * * * * * *
5460756 ATGGTTGTGGCAAT---AGGATCTACAGCACGCATAGAGGGACTCAGCTGATCCCCGGCTTGTGC
773 A-GG--GTTGCAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* *
5460818 ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
835 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
5460883 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCT-GACCGAGGGTT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTT
* * *
5460947 GCCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCAGGGCACCATCG
65 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * * *
5461012 TCGGAGCATCGCCGGAGAACCTAACCGGCAGCATTAGGGTTTCGACGATCGGGGGGGCCAGGGGG
130 CCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
5461077 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
195 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5461142 AAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCC
260 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * * *
5461207 ATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAGTGGCCACAATATCTTGTACACTTCGAGTTT
325 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
5461272 TTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCACATCTACCAAGTTAGGGGCCA
390 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
5461337 AAAAACCTTCTGAAAAAGTTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAAT
455 AAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
5461402 AAAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
520 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
5461467 AAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA
585 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
5461532 TCGATCCACGGCATGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCTT
650 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * *
5461597 TTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG
715 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG
** * ** * * * * *
5461662 CAGCAACAGGATCGATAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGAGCATCCCGCCCG
780 CAATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
5461727 TCTAGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
845 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
5461782 GTTCATTCCCAGT-TAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-
* * *
5461846 CGGCAGCACATGCCCGGGCACATGCTGGGCCCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
65 --GC-G-----G--C-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
5461911 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGA-CTGACGACATTAGGGTTCCGACGATCGGG
119 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCGGG
* * *
5461975 GGGGCTAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCC
183 GGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
5462040 CCTATCCCTCGTCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
247 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
5462105 GCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
312 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * *
5462170 ACA-TTTTAGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTAC
377 ACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** * **
5462234 CAAGTTAGGGGCTAAAATTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
441 CAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
5462299 AAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
506 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
5462364 ---T-TG----TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATCTACCTAAA-C
571 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* * *
5462420 CAACTAACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT----GCC
636 CACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
5462481 CGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
700 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
5462546 -C---T--A-----GCCAT-G--GGTTACGGCAACACGTAGAGGGGGACCCGGCCGAT-CCCGGC
765 CCGGATCGAGGGTTGCAATAGCAGGAT-CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGC
* * * * * *
5462596 TTAC-AATCCCGCCCCTCTGG-CTGCTGAGC-CCAGCCCGCT-GTTTCGTCTAGGTTGA-TTA-G
829 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG--TGGGTTGACTTAGG
5462655 -ATACGGA
892 CATACGGA
* ** * * ** *
5462662 GTGTCATTCCAAGTCTAAGCATATAGAGTTCATTCCCAGTTTAAGATCGAACCAGATCGAGGGTA
1 GT-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT-
* * ** * * **
5462727 TGCAGCAGCACATGCTAGGCTCGGGTGTGTGCT-GTGCCACATTTTTCTTCGTCGAGATACCAAT
64 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-A-
* * * * * * *
5462791 TCACCAGAG--TCACCGGAGAA-CTTACCAGCTGCATTGGGGTTCCGACGATCGAGGGAGG-CGG
127 TCGCCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCG-GGGGGGCCGG
* ** * *
5462852 GGTG-GTGCGCACATGATGTTGTAATGGGTTGCTGGGTACTT-G-CCTTATACT-GCCACCTATC
191 GGGGTGTGCGCACATGATG-TGCGATGGG-TGCT-GGTACTTGGCCCTTATATTGGCCCCCTATC
* ** * * *
5462913 CCTCATCAAACCTCAAGAACTCACACCCCCCGAAAAAGTATTTGAGGGTTTTACAGG-TTGCTGC
253 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGC
* * *
5462977 CAGTATGCCCATTAAAAGTGCCTGATAAATGGGGGATAGTTTTTTCAAATGGTCACAAAATCTTG
317 CAGTA-G-CCATT-AAAGTGTCTG--AAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
5463042 TACACTTCGAGTTTTTGGCTTAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
376 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
5463107 CAAGTTTGGGTCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAA
441 CAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
5463172 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACTTGAAGGCTTAAGGGACCA
506 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5463237 TTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACC
571 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* * * *
5463302 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCCTCTCTCTGGCCGGCGCAGTGCCCGCCC
636 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
5463367 GCCCGC
701 GCCCGC
5463373 TCATTTCTCG
Statistics
Matches: 8369, Mismatches: 1057, Indels: 416
0.85 0.11 0.04
Matches are distributed among these distances:
867 117 0.01
868 32 0.00
869 440 0.05
870 58 0.01
871 23 0.00
872 14 0.00
873 648 0.08
874 35 0.00
875 111 0.01
876 4 0.00
877 29 0.00
878 439 0.05
879 3 0.00
880 18 0.00
881 115 0.01
882 62 0.01
883 17 0.00
884 13 0.00
885 20 0.00
886 26 0.00
887 89 0.01
888 9 0.00
889 1 0.00
890 283 0.03
891 2 0.00
892 4 0.00
893 8 0.00
894 592 0.07
895 71 0.01
896 124 0.01
897 179 0.02
898 195 0.02
899 699 0.08
900 297 0.04
901 570 0.07
902 1436 0.17
903 1117 0.13
904 4 0.00
905 8 0.00
906 1 0.00
907 3 0.00
908 1 0.00
909 3 0.00
910 105 0.01
911 344 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
CGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC
AATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
Found at i:5458215 original size:26 final size:26
Alignment explanation
Indices: 5458179--5458231 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5458169 GTTGACTTAG
5458179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5458205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5458231 G
1 G
5458232 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5459099 original size:26 final size:26
Alignment explanation
Indices: 5459069--5459120 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5459059 GTTGACTTAG
5459069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5459095 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5459121 TATCGGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5459496 original size:899 final size:899
Alignment explanation
Indices: 5457763--5463372 Score: 7018
Period size: 903 Copynumber: 6.3 Consensus size: 899
5457753 GTTTGGGGTG
* * ** * *
5457763 AAAATCCCGGACTGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCCTCTTGCCATGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
5457828 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
5457893 GCAGAAATACGAAGATGTGCCTCAACCTACCTACCACCCTATCGATCCACGGCTTACGCATCTCG
131 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
5457958 TCTCTCTAGCCGACGTAGTG-CTCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
196 TCTCTCTGGCCGGCGTAGTGCCT-GCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * **
5458022 ATACGGAGTTCATTCCTAATCTAAGATCAGACCAGA-TCGAGGGTTGCGGCAGCAGGATC-AGCA
256 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCTACAGCAGGATCGA-CA
* * * * * * * * *
5458085 GCATGCAGAAGGGGACCTGACCAATCCCCAGCTTGCGCATCCAGCCCCTCTAGCCGACTGAGCGT
319 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
5458150 CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
384 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * *
5458215 TTCATTCCCAGTCTAAGATCGGATC-GGTCAGAGGGTTGCGGTAGCACATGCTGGGCACGGACAT
449 TTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
* *
5458279 GTGCTGGTGCCACATTTTTCTTCATCGGGGCACCAT--------CA-C-C-GGAGAACCTGACCG
513 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCG
* *
5458333 GCGGCATTGGGTTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGAACATGATGTGCGATGGGT
578 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
5458398 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
641 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5458463 AAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
706 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
5458528 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
771 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
5458593 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
836 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * **
5458657 AAAATCCCAAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5458722 AAGTTCACGTGAAGGCTTAAGGGA-AATTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
66 AACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
5458786 CGCAGAAATATGAATATGTGCCAAAACCAACCTACCACCCTATCGATCGACGGCTTGCGCATCCT
130 TGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
5458851 GTTTCTCTGGCCGACGTAGTGCCTACCCGTCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAC
195 GTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * *
5458916 GAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTACAGCAAGATCGACAGCACAC
260 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTACAGCAGGATCGACAGCACGC
* ** * * *
5458981 AGAGGGTGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGATCAGCGCCCGCAC
325 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
5459046 GATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
390 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
5459111 CCCAGTCTAATATCGGATCAGATCGAGGGTTACAGCAGTACATGCTGGGCTCGAGCATGTGCTGG
455 CCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
5459176 AGCCGCATTTTTCTTCGTTGAGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCAA
520 TGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCAT
*
5459241 TGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
585 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* **
5459306 TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACGTCCCCTTAAAGAGCAT
650 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
5459371 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAA
715 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* *
5459436 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAACTTTTTTATGCATGCCAACAAAAAT
780 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
5459501 ACAAGGATCACATCTACCATA-TTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAA
845 ACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * *
5459556 AAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTTGTCTTGCCTTGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * * *
5459621 AATTTCACGTGAAGGCTAAAAGGAACATTGTATGAATTTACAAGTCATAAAAATGCCATTGGCAC
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * * * *
5459686 ACAAAAACATGAAGATGTCCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGTGCATTCCG
131 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * * *
5459751 TCTCTCTGATCGGCATAGTGCCCGCCCGCCTGCCCGCCCGTTCGTTTCATCTGTTGGCTTAGGCA
196 TCTCTCTGGCCGGCGTAGTGCCTG--C-CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * * *
5459816 TACGTAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGGGGGTTGCGATAGCAGGATTGGCAGC
257 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCTACAGCAGGATCGACAGC
* * * * *
5459880 ACGCAGAGGGGGACCCAACCAATCCCCGGCTTGTGCATCCCGCTCCTCTGGCCGGCTGAACGCCC
321 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
5459945 GCACGCTCGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
386 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
5460010 CATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGT
451 CATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAG-CAGCACATGCTGGGCTCGGGCATGT
** * ** * * *
5460074 GCTGGTGCTGCACTTTTCTTCACCGAGGCACCATCGCCGGAGCATTG-TCGGGGAACCTGACCGA
515 GCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCT-GGAGAACCTGACCGG
* * * *
5460138 CGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCG-AGTATGATGTGCGATGGGTGT
579 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA-CATGATGTGCGATGGGTGC
* * *
5460202 TGGTACTTGGCCCTTATATTGGCTCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAA
643 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * * *
5460267 AGAGCATTTCAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTTTATGAAATGGGGACACCT
708 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* *
5460332 TTTTCAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAA
773 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
5460397 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTTCGAAAAAATTTAAA
838 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
5460459 AAAATCCCAAACCGTAACAAGTTTCAAAAATCGTGAAAAA-AAAAAACGAGTCGTCTTGCCATGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5460523 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGGCAC
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
5460588 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
5460653 TCTCTCTCGTCGGCATAGTGCCCACCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGAA
196 TCTCTCTGGCCGGCGTAGTG----CCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * ** * * ** *
5460718 TACGAAGTTCATTCCCTA-TCTAAGATCAGATCAAACCCATGGTTG-TGGCAATAGGATCTACAG
257 TACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCT-ACAGCAGGATCGACAG
* * * * * *
5460781 CACGCATAGAGGGACTC-AGCTGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGC
320 CACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
5460845 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
384 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
5460910 TTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCATG
449 TTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATG
** * * *
5460975 TGCTGGTGCTGCATTTTTCTTCGTC-AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCG
514 TGCTGGTGCCACATTTTTCTTCGTCGA-GGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCG
* * * *
5461039 GCAGCATTAGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
578 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
5461104 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAA
643 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5461169 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTT
708 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * * * * *
5461234 TTTTCGAGTGGCCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAA
773 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
5461299 CAAAAATACAAGGATCACATCTACCAAGTTAGGGGCCAAAAAACCTTCTGAAAAAGTTTTAA
838 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * *
5461361 AAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTTTTGCCATGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
5461426 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCAT
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
5461491 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCATGCGCATCCCA
131 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
5461556 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCTTTTCATTGGTTGGCTTAGGCATACG
196 TCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * *
5461621 GAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGC-AGCAACAGGATCGATAGCACG
261 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCTA-CAGCAGGATCGACAGCACG
* * * * * *
5461684 TAGAGGGGGACCCGACCGATCCCCGACTTGAGCATCCCGCCCGTCTAGCCGGCTGAGCGCCTGCA
324 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
5461749 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-TAAGCATGCGGAGTTCAT
389 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
5461813 TCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGCAGCACATGCCCGGGCACATGCTGGGCC
454 TCCCAGTCTAAGATCGGACCAGATC-GAGGGTTA---CAG--CA-------GCACATGCTGGGCT
* *
5461877 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TCGGAGAA
506 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCT-GGAGAA
* * * * * *
5461941 CCTGACTGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGGTGTGCGCACATGATGTGT
570 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
* * *
5462006 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCTAGAACTCACA
634 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
5462071 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
699 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * *
5462136 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTAGGTTTTTAGCTGAATTTTTTTGT
764 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
5462201 GCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTAGGGGCTAAAATTCCTTTCGAAAAAA
829 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
5462266 TTTTAA
894 TTTTAA
** *
5462272 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
5462337 AACTTCATGTGAAGGCTTAAGGGACCA---T-TG----TACAAGCCATAAAAATGGCATTGGCAT
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
5462394 GCAGAAATATGAAGATCTACCTAAACCAA-CTAACCACCCTATCGATCCACGGCTTGCGCATCCC
131 GCAGAAATATGAAGATGTGCCTAAACCAACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
5462458 ATCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATAC
195 GTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * *
5462519 GGAGTTCATTCCTAGTCTAAGATCAGACTAG-C-CATGGG-T--T--A-C-GG--C-A-A-CACG
260 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCTACAGCAGGATCGACAGCACG
* * * * * * *
5462570 TAGAGGGGGACCCGGCCGAT-CCCGGCTTAC-AATCCCGCCCCTCTGG-CTGCTGAGC-CCAGCC
324 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * **
5462631 CGCT-GTTTCGTCTAGGTTGA-TTA-G-ATACGGAGTGTCATTCCAAGTCTAAGCATATAGAGTT
389 CGCTCGTTTCG--TGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGTCTAAGCATACGGAGTT
* * * * **
5462692 CATTCCCAGTTTAAGATCGAACCAGATCGAGGGTATGCAGCAGCACATGCTAGGCTCGGGTGTGT
451 CATTCCCAGTCTAAGATCGGACCAGATCGAGGGT-TACAGCAGCACATGCTGGGCTCGGGCATGT
** * * *
5462757 GCT-GTGCCACATTTTTCTTCGTCGAGATACCAATTCACCAGAGTCA-C-C-GGAGAA-CTTACC
515 GCTGGTGCCACATTTTTCTTCGTCGAGGCACC-A-TCGCCGGAG-CATCGCTGGAGAACCTGACC
* * * * **
5462817 AGCTGCATTGGGGTTCCGACGATCGAGGGAGG-CGGGGTG-GTGCGCACATGATGTTGTAATGGG
577 GGCGGCATTGGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATG-TGCGATGGG
* * *
5462880 TTGCTGGGTACTT-G-CCTTATACT-GCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCC
640 -TGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
** * * * *
5462942 CCGAAAAAGTATTTGAGGGTTTTACAGG-TTGCTGCCAGTATGCCCATTAAAAGTGCCTGATAAA
703 CTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTA-G-CCATT-AAAGTGTCT-A-AAA
* * * * * *
5463006 TGGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTTAATTGTTT
762 T-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* *
5463071 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACACCTTCCGAAA
826 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
5463136 AAATTTTAA
891 AAATTTTAA
* * * *
5463145 AAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGA
1 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5463210 AACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAT
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
5463275 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCC
131 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
5463340 TCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGC
196 TCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGC
5463373 TCATTTCTCG
Statistics
Matches: 4113, Mismatches: 504, Indels: 207
0.85 0.10 0.04
Matches are distributed among these distances:
867 74 0.02
868 31 0.01
869 33 0.01
870 50 0.01
871 23 0.01
872 13 0.00
873 207 0.05
876 1 0.00
877 2 0.00
878 2 0.00
880 12 0.00
881 115 0.03
882 53 0.01
883 18 0.00
884 13 0.00
885 17 0.00
886 23 0.01
887 1 0.00
888 1 0.00
889 1 0.00
890 272 0.07
891 7 0.00
892 1 0.00
893 2 0.00
894 197 0.05
895 2 0.00
897 3 0.00
898 52 0.01
899 704 0.17
900 5 0.00
901 49 0.01
902 780 0.19
903 894 0.22
904 1 0.00
906 3 0.00
907 2 0.00
908 1 0.00
910 102 0.02
911 346 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (899 bp):
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTACAGCAGGATCGACAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
Found at i:5460008 original size:26 final size:26
Alignment explanation
Indices: 5459972--5460024 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5459962 GTTGAATTAG
5459972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5459998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5460024 G
1 G
5460025 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5460911 original size:26 final size:26
Alignment explanation
Indices: 5460874--5460926 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5460864 GTTGACTTAG
5460874 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5460900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5460926 G
1 G
5460927 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5461807 original size:25 final size:26
Alignment explanation
Indices: 5461773--5461824 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
5461763 GTTGACTTAG
5461773 GCATACGGAGTTCATTCCCAGT-TAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5461798 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5461824 G
1 G
5461825 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5464223 original size:26 final size:26
Alignment explanation
Indices: 5464186--5464238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5464176 GTTGACTTAG
*
5464186 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5464212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5464238 G
1 G
5464239 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5465101 original size:25 final size:26
Alignment explanation
Indices: 5465067--5465118 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
5465057 GTTGACTTAG
5465067 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5465092 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5465118 G
1 G
5465119 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5465446 original size:22 final size:22
Alignment explanation
Indices: 5465418--5465461 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5465408 CTAAATCTTC
*
5465418 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5465440 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5465462 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:5468924 original size:18 final size:18
Alignment explanation
Indices: 5468898--5468932 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5468888 TAATCCATGA
*
5468898 GAACCAGAAGCTTTACCT
1 GAACCAGAAACTTTACCT
*
5468916 GAACTAGAAACTTTACC
1 GAACCAGAAACTTTACC
5468933 CAAAGAACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (18 bp):
GAACCAGAAACTTTACCT
Found at i:5469159 original size:23 final size:25
Alignment explanation
Indices: 5469107--5469165 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
5469097 AAAGGGTTCA
* *
5469107 GCAATGAAGGCCTAAACAGGATTCG
1 GCAATGAAGGCCTAAACAGAAGTCG
5469132 GCAATGAAGGCCTAAA-A-AAGTCG
1 GCAATGAAGGCCTAAACAGAAGTCG
5469155 GCAATGAAGGC
1 GCAATGAAGGC
5469166 TGAAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 15 0.47
24 1 0.03
25 16 0.50
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.14
Consensus pattern (25 bp):
GCAATGAAGGCCTAAACAGAAGTCG
Found at i:5469348 original size:22 final size:22
Alignment explanation
Indices: 5469320--5469363 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5469310 CTAAATCTTC
*
5469320 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5469342 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5469364 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:5471016 original size:26 final size:26
Alignment explanation
Indices: 5470987--5471038 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5470977 GCTGACTTAG
*
5470987 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
5471013 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
5471039 CATCGGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:5471176 original size:903 final size:899
Alignment explanation
Indices: 5469422--5472907 Score: 4475
Period size: 903 Copynumber: 3.9 Consensus size: 899
5469412 CCACACTTGG
*
5469422 CCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
5469487 CATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTTCAAATGG
66 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
* * * *
5469552 TCACAAAATGTTGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAT
131 TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
5469617 GGATCACGTCTACCAAGTTTGGGG-CAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACC
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * *
5469681 GCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAAGGAGTCATCTTGCCATGAAACTTCACGTGAA
260 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
5469746 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
325 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
5469811 GATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-G
390 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAG
* * ** * * * * *
5469875 GCGTAGTGCCCACCCGCCCGTTCGCCGGTTCGTTTCGTCGGTAGTCTTAGGCATACAAAGTTCAT
455 GCATAGTGCCCGCCCGCCC-ACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCAT
* * * * * ** *
5469940 TCCTAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGTAGGATCGATACCACGTAGAGGGGGA
519 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGA
* * * * *
5470005 CCC-AGCCGATCCTCGGCTTGCGCAACCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
584 CCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCATTT
*
5470069 CGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
648 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
5470134 AAGATTGGACCT-GACCGAGGGTTCCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACA
713 AAGATCGGA-CTGGACCAAGGGTT-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** *
5470198 TTTTTCTTTGCCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTT
776 TTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCC--AGAACCTAACCGGCGGCATTGGGGTT
* *
5470263 TCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGCC
839 CCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TGCC
*
5470325 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
5470390 GATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAGTGG
66 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
* * * * *
5470455 CCACAATATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAA
131 TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
5470520 GGATCACATCTACGAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCC
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
5470585 CAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGCCTTGCCACGAAACTTCACGTAAAG
261 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
5470650 GCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAG
326 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
5470715 ATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCTCTCTGGTC-GG
391 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGG
* * *
5470779 TATAGTGCCCGCCCACCCACCAGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATT
456 CATAGTGCCCGCCCGCCCACC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATT
* * * * * * *
5470844 CCCAGTCCAAGATCAGATCAAACCGAGGGTTGCGATAGCAGGATTGGCAGCACGTAAAGCGGGAC
520 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * * * * * *
5470909 CCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGCCGGTTGAGCTCCCGTACGGTCGTTTTG
585 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCATTTCG
* *
5470974 TGGGCTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAA
650 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5471039 CATCGGACTAGACCAAGGGTTATGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
715 GATCGGACTGGACCAAGGGTT-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * **
5471104 TTCTTCATCGGGGCACCATCGCCAGAGCATCGCCATTGAACCTGACCGACAACATTGGGGTTCCG
779 TTCTTCACCGGGGCACCATCGTCAGAGCATCGCCA--GAACCTAACCGGCGGCATTGGGGTTCCG
* * * *
5471169 ACGATCGGAGGGG-CTGAGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTCGC
842 ACGATCGGGGGGGCCAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGC-C
* *
5471228 CCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5471293 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGG
66 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
5471358 TCAC-------TG---A-----A-TTTTT-G-TG-A---------GCATGCCAACAAAAATACAA
131 TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
5471395 GGATCATGTCTACAAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
** * *
5471460 CAAAAAGTTTTGAAAATCGTTAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAG
261 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
5471525 GCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
326 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
5471590 ATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCA-A
391 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGG
* * * * * * * *
5471654 CGTAATCCCCGTCCGCCCGTCGGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATT
456 CATAGTGCCCGCCCGCCC-ACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATT
* *
5471719 CCCAGTCTAAGATC-GAACCAGACTGAGGGTTGCGACAGC---AT--GCAG-AGGT--A----GA
520 CCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGA
* * * *
5471771 CCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCATTTC
584 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCATTTC
* *
5471836 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
649 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * *
5471901 AGATCGAACCGGATCGAGGGTTGCTACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATT
714 AGATCGGACTGGACCAAGGGTT-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
5471966 TTTCTTCACCCGAGCA-C--CGTC--A-C--CG-GAGAACCTAACCGGCGGCATTGGGGTTCCGA
778 TTTCTTCACCGGGGCACCATCGTCAGAGCATCGCCAGAACCTAACCGGCGGCATTGGGGTTCCGA
* ** * *
5472022 CGATCGGGGGGACTGGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGC
843 CGATCGGGGGGGC-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TGCC
* * *
5472081 CCTTATATTGGCCCTCTATCCCTAATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5472146 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGG
66 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
*
5472211 TCACAAAATGTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
131 TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * **
5472276 GGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTCTAAAAAATCTTGAACCG
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
5472341 CAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAG
261 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
5472406 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
326 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
5472471 ATGTGCCTAAAGCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG-CTGA
391 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGG
* * ** ** *
5472535 CATAGTGCTCGCCCGCCCACCTGCCCACTCGTTTTGTCTATTGGCTTTGGCATACAAAGTTCATT
456 CATAGTGCCCGCCCGCCCACC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATT
* * * *
5472600 CCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGACAGCATGATCGGCAGCACGCAGAGGGGGAC
520 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * *
5472665 CCGACCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCTGGCTGAG-TGCCCGCACGCTCATTTC
585 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCT-CCCGCACGCTCATTTC
* *
5472729 GTGGGTTAACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
649 GTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
5472793 AAG-TCGGATTGGATCAAGGGTTGCGGCAGCACATGCTGGGATCGGGCATATGCTGGTACTGCAT
713 AAGATCGGACTGGACCAAGGGTT-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
5472857 TTTTCTTCACCGAGGCACCATCATCGGAGCATCACCGAAGAACCTATCCGG
777 TTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCC--AGAACCTAACCGG
5472908 TAGTGTCATA
Statistics
Matches: 2234, Mismatches: 279, Indels: 140
0.84 0.11 0.05
Matches are distributed among these distances:
852 35 0.02
853 163 0.07
854 3 0.00
855 2 0.00
857 1 0.00
858 1 0.00
860 5 0.00
862 1 0.00
863 182 0.08
867 1 0.00
868 1 0.00
869 8 0.00
870 5 0.00
871 2 0.00
872 3 0.00
874 1 0.00
875 337 0.15
876 1 0.00
880 2 0.00
881 338 0.15
882 1 0.00
884 3 0.00
885 2 0.00
886 5 0.00
887 7 0.00
888 1 0.00
889 1 0.00
892 63 0.03
893 124 0.06
895 3 0.00
896 2 0.00
897 1 0.00
898 1 0.00
900 1 0.00
901 1 0.00
902 7 0.00
903 912 0.41
904 7 0.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (899 bp):
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGG
CATAGTGCCCGCCCGCCCACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACTGGACCAAGGGTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCACCGGGGCACCATCGTCAGAGCATCGCCAGAACCTAACCGGCGGCATTGGGGTTCCGACGA
TCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGCC
Found at i:5471886 original size:26 final size:26
Alignment explanation
Indices: 5471850--5471902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5471840 GTTGACTTAG
5471850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5471876 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5471902 G
1 G
5471903 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5472780 original size:26 final size:26
Alignment explanation
Indices: 5472743--5472795 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5472733 GTTAACTTAG
5472743 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5472769 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
5472795 G
1 G
5472796 TCGGATTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5473451 original size:57 final size:57
Alignment explanation
Indices: 5473390--5473596 Score: 335
Period size: 57 Copynumber: 3.6 Consensus size: 57
5473380 CTTGTGTAGG
5473390 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAA
* *
5473447 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTT-AA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTTTAAA
* * *
5473504 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAG
1 G-AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAA
*
5473562 GAAAATTGATACTTTCAACTTTTCCTCAAAAATAT
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATAT
5473597 ATATTTTTTT
Statistics
Matches: 139, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
57 86 0.62
58 53 0.38
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.43
Consensus pattern (57 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAA
Found at i:5473523 original size:115 final size:120
Alignment explanation
Indices: 5473391--5473619 Score: 387
Period size: 115 Copynumber: 1.9 Consensus size: 120
5473381 TTGTGTAGGG
* *
5473391 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAAGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAAGAAAATTGA
*
5473456 TACTTTCAACTTTTCC-CTAAAA-ATAT-TTTTTTTGAAA-TTT-ATTTTTAAGA
66 TACTTTCAACTTTTCCTCAAAAATATATATTTTTTTGAAACTTTGATTTTTAAGA
*
5473506 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAAGAAAATTGA
5473571 TACTTTCAACTTTTCCTCAAAAATATATATTTTTTTGAAACTTTGATTT
66 TACTTTCAACTTTTCCTCAAAAATATATATTTTTTTGAAACTTTGATTT
5473620 CCANNNNNNN
Statistics
Matches: 105, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
115 78 0.74
116 5 0.05
117 4 0.04
118 11 0.10
119 3 0.03
120 4 0.04
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (120 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAAGAAAATTGA
TACTTTCAACTTTTCCTCAAAAATATATATTTTTTTGAAACTTTGATTTTTAAGA
Found at i:5476585 original size:26 final size:26
Alignment explanation
Indices: 5476548--5476600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5476538 GTTGACTTAG
*
5476548 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5476574 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5476600 G
1 G
5476601 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5477453 original size:25 final size:25
Alignment explanation
Indices: 5477419--5477469 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
5477409 GTTGACTTAG
5477419 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
*
5477444 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
5477469 G
1 G
5477470 ATCGGACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:5477539 original size:871 final size:882
Alignment explanation
Indices: 5475801--5477649 Score: 2315
Period size: 871 Copynumber: 2.1 Consensus size: 882
5475791 GCGCATCGCT
* * * * **
5475801 GGAGAACCTGACCGGCGGCAATGGGGTTCCGACGATCGGGGGAGGGCCGGGTGGTGTGCGCATGT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG-GGGCCGGGGGGTGTGCGCACAT
5475866 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
64 GATGTGCGAT-GG-G-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
5475931 ACTCACATCCCCTTAAAGAGCATTGAGATTTTACAGGTTGCTGCAGTAGCCATTAAAGTGTCTGA
126 ACTCACACCCCCTTAAAGAGCATTGAGATTTTAAAGGTTGCTGCAGTAGCAACTAAAGTGTCTGA
*
5475996 AATGGGGACATTTTTTTCAAACGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
191 AATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
* **
5476061 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATATTTGGGGCCAAAACTCCTTCCGAA
256 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCATAACTGGGGCCAAAACTCCTTCCGAA
** *
5476126 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTTGT
321 AAAATTTTAAAAAATCCTGAACCG-AAAAA--TTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
5476191 CTTGCCTCGAAATTTCACGTGAAGCTAAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGC
383 CTTGCCTCGAAACTTCACGTGAAGCTAAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGC
* * **
5476256 CATTGGCACGTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGTACGACTT
448 CATTAGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * *
5476321 ACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGCTCTTTTCATTGGTTGGCT
513 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCTCGCTCGTTTCATGGGTTGGCT
* *
5476386 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCG
578 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAAGATCG
* * * ** *
5476451 GTAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCGTCTGGTTGGCTGAA
643 GCAGCATGCAGAGAGGGACCCGACCGATCCCCAACTTACGCATCCCGCCCGTCTGGCCGACTGAA
5476516 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACG
708 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACG
5476581 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTACGGCAGCACATGCTGAGCTCGAGC
773 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTACGGCAGCACATGCTGAGCTCGAGC
* **
5476646 TTGTGCTGGTTCCATATTTTCTTTGCCG-GGGCACCAT-AAT-C-
838 ATGTGCTGGTTCCATATTTTCTTCACCGAGGGCACCATGAATCCG
5476687 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
* *
5476752 ATGTGCGATGGGTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTC
65 ATGTGCGATGGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
5476817 ACACCCCCTTAAAGAGCATTTGAGA-TTTAAAGGTTTGCTGCTAGTAGCAACT-AAGTGTCTGAA
130 ACACCCCCTTAAAGAGCA-TTGAGATTTTAAAGG-TTGCTGC-AGTAGCAACTAAAGTGTCTGAA
* **
5476880 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-TACACTTTGAGTTTTTAGCTGAA-TTTTT
192 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT
** *
5476943 TATGCA-GCCAA-AAAAATACAAGGATCACGTCTACCA-AGACTGGGGCCAAAACTCCTTTTGGA
257 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCATA-ACTGGGGCCAAAACTCCTTCCGAA
* *
5477005 GAAA-TTTAAAAAAT-CTCGAACC-ACAAAA-TCAAAAATCATG-AAAA-A-AAAATGAGTCGTC
321 AAAATTTTAAAAAATCCT-GAACCGA-AAAATTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * * * * *
5477063 TTGCCAT-GAAACTTCATGTGAGGCTTAAGGGACCATTGTATGAATTTACAGGTCGTAAAAATGG
384 TTGCC-TCGAAACTTCACGTGAAGCTAAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGC
* **
5477127 CATTAGCAC-ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGTTT
448 CATTAGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * * * *
5477191 GCGCATCTCGTCTCTTTGGGCCGGCGTAGTGCTCGCCCGCCCCCCCGTCCGTTCGTTTCGTCGGG
513 ACGCATCCCGTCTCTCT-GGCCGACGTAGTGCCCGCCCG--CCCCC-T-CGCTCGTTTCAT-GGG
* * * *
5477256 TTGGGTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGACTGAA-TCG-GGGTTGCGATAGC
572 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCGACAGC
* * **
5477319 AGGATCGGCAGCATGCAGA-AGGGA-CCGACCGATCCTCAACTTGTGCATCCC-CTCC-T-TGGC
636 AAGATCGGCAGCATGCAGAGAGGGACCCGACCGATCCCCAACTTACGCATCCCGC-CCGTCTGGC
* * * *
5477379 CGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTA
700 CGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTA
* * * *
5477443 AGCATACGGAGTTCATT-CTAGTCTAAGATCGGACATGGGA-CGAGGGTTACGGCAGCACATGCT
765 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC--CGAACCGAGGATTACGGCAGCACATGCT
* * *
5477506 GGGCTC-AGACATGT-CTGGTGCC-TGCATTTTTCTTCACCGAGGGCACCATCGCCGGGCATCGC
828 GAGCTCGAG-CATGTGCTGGTTCCAT--A-TTTTCTTCACCGAGGGCACCAT------GAAT--C
5477568 CG
881 CG
* * * *
5477570 GGGGAACCTGACCGACGGCATTTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTACGCGCAT
1 GGAGAACCTGACCGACGGCA-TTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
5477635 GATGTGCGATGGGTG
64 GATGTGCGATGGGTG
5477650 CTGGTACTTG
Statistics
Matches: 839, Mismatches: 89, Indels: 72
0.84 0.09 0.07
Matches are distributed among these distances:
868 1 0.00
869 25 0.03
870 118 0.14
871 157 0.19
872 13 0.02
873 33 0.04
874 15 0.02
875 38 0.05
876 47 0.06
877 6 0.01
878 16 0.02
879 49 0.06
880 5 0.01
881 10 0.01
882 97 0.12
883 77 0.09
884 70 0.08
885 28 0.03
886 34 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTGAGATTTTAAAGGTTGCTGCAGTAGCAACTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCATAACTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGAAAAATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTC
GAAACTTCACGTGAAGCTAAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGCCATTAGCA
CGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCTCGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAAGATCGGCAGCATG
CAGAGAGGGACCCGACCGATCCCCAACTTACGCATCCCGCCCGTCTGGCCGACTGAACGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGAACCGAGGATTACGGCAGCACATGCTGAGCTCGAGCATGTGCTG
GTTCCATATTTTCTTCACCGAGGGCACCATGAATCCG
Found at i:5477798 original size:22 final size:22
Alignment explanation
Indices: 5477770--5477813 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5477760 CTAAATCTTC
*
5477770 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5477792 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5477814 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:5481285 original size:18 final size:18
Alignment explanation
Indices: 5481259--5481293 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5481249 TAATCCATGA
*
5481259 GAACCAGAAGCTTTACCT
1 GAACCAGAAACTTTACCT
*
5481277 GAACTAGAAACTTTACC
1 GAACCAGAAACTTTACC
5481294 CAAAGAACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (18 bp):
GAACCAGAAACTTTACCT
Found at i:5481520 original size:23 final size:25
Alignment explanation
Indices: 5481468--5481526 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
5481458 AAAGGGTTCA
* *
5481468 GCAATGAAGGCCTAAACAGGATTCG
1 GCAATGAAGGCCTAAACAGAAGTCG
5481493 GCAATGAAGGCCTAAA-A-AAGTCG
1 GCAATGAAGGCCTAAACAGAAGTCG
5481516 GCAATGAAGGC
1 GCAATGAAGGC
5481527 TGAAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 15 0.47
24 1 0.03
25 16 0.50
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.14
Consensus pattern (25 bp):
GCAATGAAGGCCTAAACAGAAGTCG
Found at i:5481708 original size:22 final size:22
Alignment explanation
Indices: 5481680--5481723 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5481670 CTAAATCTTC
*
5481680 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5481702 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
5481724 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:5483358 original size:26 final size:25
Alignment explanation
Indices: 5483320--5483371 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
5483310 GCTGACTTAG
*
5483320 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCACTCCCAGTCTAA
5483345 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATAC-GAGTTCACTCCCAGTCTAA
5483371 G
1 G
5483372 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCACTCCCAGTCTAA
Found at i:5483620 original size:888 final size:887
Alignment explanation
Indices: 5481776--5485165 Score: 4466
Period size: 888 Copynumber: 3.9 Consensus size: 887
5481766 GTTTTCCCAC
*
5481776 ACTTGG-CCTTATATTGGCCCCTTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
5481839 CATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT-GGGACACTTTTTT
66 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5481903 CAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
5481968 AATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAAATCCTTCCGAAAAAATTTTAAAAAATC
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATC
* *
5482032 CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA-AGAAAATGAGTCATCTTGCCATGAAACTTC
260 CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
5482096 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CAAGAA
325 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-AGAA
*
5482160 ATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
389 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
5482225 TGG-CGGCGTAGTGCCCACCCGCCC-GCG-CCG-TCGTTTCGTCGGTTGTCTTAGGCATACAAAG
454 TGGCCGACGTAGTGCCCGCCCGCCCACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
* * **
5482286 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTAGAG
519 TTCATTCCCAG-CTAAGATCAGATCAGACCGAGGGTTG-CGCAGCAGGATCGGCAGCACGTAGAG
*
5482351 GGGGACCC-AGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
582 GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCT-GCCGGCTGAGCGCCCGCACGCT
* *
5482415 CGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
645 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
5482479 AGTCTAAGATCGGACTGACCGAGGGTTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTAC
710 AGTCTAAGATCGGACTGACCAAGGGTTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGC
* * *
5482544 ATTTTTCTT-CGGGGCACCATCGTCGAGCAGCACGTCGGAGAACCTAACCGGCGGCATTGGGGTT
775 ATTTTTCTTCCGGGGCACCATCG-CCAG-AGCACG-C--AGAACCTGACCGACGGCATTGGGG-T
* *
5482608 TCGGCGATCGGGGGGGC-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
834 TCGACGATC-GGGGGGCTGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5482663 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
5482728 CATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTT
66 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
5482793 CGAGTGG-CACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
5482857 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAAT-C
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCC
* ** * *
5482921 CGAACC-CAAAAAGTTTC-AAAATTGTGAAAAATAGAAAACGAGTCGCCTTGCCACGAAACTTCA
261 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
5482984 CGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAA
* *
5483049 TATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCTCTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *** *
5483113 GGTCGGTATAGTGCCCGCCCACCCACCAG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAG
455 GGCCGACGTAGTGCCCGCCCGCCCACC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
* * *
5483176 TTCATTCCCAG-TAAGATCAGATCAGACCGAGGGTTGCGATAGCAGGATTGGCAGCACGTA-AAG
519 TTCATTCCCAGCTAAGATCAGATCAGACCGAGGGTTGCG-CAGCAGGATCGGCAGCACGTAGAGG
* * * *
5483239 GGGACCCGACCGATCCCCGGCTT-CGCATCCCGCCCCTCTAGCCGG-TGAGCTCCCGTACGCTCG
583 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCT-GCCGGCTGAGCGCCCGCACGCTCA
* *
5483302 TTTCGTGGGCTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAG
647 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
5483366 TCTAAGATCGGACTAGACCAAGGGTTTGGTAGCACATTCTGGGCTC-GGCATGTGCTGGTGCCGG
712 TCTAAGATCGGACT-GACCAAGGG-TTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTG
**
5483430 CATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCATTGAACCTGACCGACAACATTGGGG
774 CATTTTTCTTC--CGGGGCACCATCGCCAGAGCA-CG-CA--GAACCTGACCGACGGCATTGGGG
*
5483495 TTCCGACGATCGGGGGGCTGAGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGT
833 TT-CGACGATCGGGGGGCTGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
5483551 ACTTCGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
5483616 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
66 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
5483681 CAAATGGT--C---A-C-TG---A-----A-TTTTT-G-TG-A---------GCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
5483718 AATACAAGGATCATGTCTACAAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCC
*
5483783 CAAACCGCAAAAAGTTTCAAAAATCAT-AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
261 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
5483847 CGTGAAGGCTTAAAGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAA
5483912 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG--TCTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * ** * *
5483975 GGCCCACGTA-T-CCCGTCCG-CCGTCGCCCGCTC--TTCATCGGTTGGCTTAGGCATACGGAGT
455 GGCCGACGTAGTGCCCGCCCGCCCACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
** *
5484035 TCATTCCCAGTCTAAGATTTGATCAGACTGAGGGTTGCG-A-CA-GAT-----G--C--AGAGGG
520 TCATTCCCAG-CTAAGATCAGATCAGACCGAGGGTTGCGCAGCAGGATCGGCAGCACGTAGAGGG
* * * *
5484088 GGA-CCGGCCGAT--CCTGCTTGCGCATCCCACCCCTCTGGCGACTGAGCGCCCGCACGCTCATT
584 GGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGCCGGCTGAGCGCCCGCACGCTCATT
* *
5484150 TCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCGTATGGAGTTCATTCCCAGTC
649 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** *
5484214 TAAGATCGGAC-G----AGGGTT-ACAGCACATGCTATGCTCGGGCATGTACTGGTGCTGCATTT
714 TAAGATCGGACTGACCAAGGGTTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTT
* * * *
5484273 TTCTTCAC--CGCAGCATCGTC--A-C-CGGAGAACCTGACCGACGGCATTGGGGTTCGACGATC
779 TTCTTC-CGGGGCACCATCGCCAGAGCACGCAGAACCTGACCGACGGCATTGGGGTTCGACGATC
* * *
5484332 GGGGGCCTGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
843 GGGGGGCTGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
5484377 ATTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
5484442 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
5484507 CAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA-AA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAA
* *
5484571 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTCTAAAAAATC
195 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATC
*** ** *
5484636 TTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA-AAAACGA-TCGTCTTGCCATGAAACTTC
260 CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
5484699 ACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-AGAAA
325 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCAGAAA
*
5484762 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
5484827 GGCCGACGTAGTG-CCGCCCGCCCACCGCCCGCTCGTTTTGTCGATTGGCTT-GGCATACAGAGT
455 GGCCGACGTAGTGCCCGCCCGCCCACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
* * *
5484890 TCATT-CCAGTCTAAGAT-AGACCAGACCGAGGGTTGCGCAGCATGATCGGCAGCACGCAGAGGG
520 TCATTCCCAG-CTAAGATCAGATCAGACCGAGGGTTGCGCAGCAGGATCGGCAGCACGTAGAGGG
* * * * ** *
5484953 GGACTCGACCGATCCCC-ACTTGTGCATCCCGCCCCTCTGGTGGCTGAGTGCCCGCACGCTCATT
584 GGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGCCGGCTGAGCGCCCGCACGCTCATT
*
5485017 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
649 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * *
5485082 TAAG-TC-GATTGGATCAAGGGTTACGGTAGCACATGCTGGGATCGGGCATATGCTGGTACTGCA
714 TAAGATCGGACT-GACCAAGGGTT--GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA
*
5485145 TTTTTCTTCCGAGGCACCATC
776 TTTTTCTTCCGGGGCACCATC
5485166 ATCGGAGCAT
Statistics
Matches: 2207, Mismatches: 194, Indels: 215
0.84 0.07 0.08
Matches are distributed among these distances:
826 181 0.08
827 23 0.01
828 1 0.00
829 1 0.00
830 2 0.00
831 1 0.00
832 2 0.00
833 2 0.00
835 9 0.00
836 1 0.00
837 1 0.00
838 26 0.01
839 15 0.01
840 4 0.00
841 1 0.00
842 5 0.00
843 1 0.00
844 3 0.00
845 10 0.00
846 93 0.04
847 18 0.01
848 6 0.00
849 1 0.00
850 62 0.03
851 1 0.00
852 53 0.02
853 61 0.03
854 121 0.05
855 27 0.01
856 18 0.01
857 24 0.01
858 16 0.01
859 9 0.00
860 30 0.01
861 70 0.03
862 16 0.01
863 125 0.06
864 43 0.02
865 9 0.00
866 9 0.00
867 74 0.03
868 37 0.02
870 1 0.00
871 2 0.00
872 7 0.00
873 5 0.00
874 2 0.00
875 39 0.02
876 7 0.00
879 1 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 91 0.04
886 54 0.02
887 199 0.09
888 279 0.13
889 224 0.10
890 54 0.02
891 26 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (887 bp):
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCC
CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
CATTCCCAGCTAAGATCAGATCAGACCGAGGGTTGCGCAGCAGGATCGGCAGCACGTAGAGGGGG
ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGCCGGCTGAGCGCCCGCACGCTCATTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACTGACCAAGGGTTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
CTTCCGGGGCACCATCGCCAGAGCACGCAGAACCTGACCGACGGCATTGGGGTTCGACGATCGGG
GGGCTGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
Found at i:5485063 original size:26 final size:26
Alignment explanation
Indices: 5485033--5485085 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5485023 GTTGACTTAG
5485033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5485059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5485085 G
1 G
5485086 TCGATTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5485738 original size:58 final size:60
Alignment explanation
Indices: 5485674--5485908 Score: 300
Period size: 58 Copynumber: 4.0 Consensus size: 60
5485664 TCTTGTGTAG
5485674 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAACTTTGATTTTTAA
* * * **
5485732 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAACTTTGATTTTTAA
* ** * * *
5485792 GGAAAATTGATACTTTCAACATTTCCTGAAAAA-CCCTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAACTTTGATTTTTAA
* * *
5485850 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-TTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTT-GAAACTTTGATTTTTA
5485909 TTTAAAGAAA
Statistics
Matches: 152, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
58 86 0.57
59 23 0.15
60 43 0.28
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAACTTTGATTTTTAA
Found at i:5485824 original size:118 final size:118
Alignment explanation
Indices: 5485674--5485905 Score: 353
Period size: 118 Copynumber: 2.0 Consensus size: 118
5485664 TCTTGTGTAG
* *
5485674 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTG-AAATTTATTTTTAAGAAAAA
1 GGAAAATTGATACTTTCAACATTTCCCCAAAAA-ACCTTTTTTGAAAATTTATTTTTAAGAAAAA
5485738 TTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTT-GAAACTTTGATTTCCAA
65 TTGATACTTTCAACTTTTCCCT-AAAAAT-TTTTTTTTGGAAACTTTGATTTCCAA
** * *
5485792 GGAAAATTGATACTTTCAACATTTCCTGAAAAACCCTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACATTTCCCCAAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAAT
*
5485857 TGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGGAAATTTTGATTT
66 TGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGGAAACTTTGATTT
5485906 TTATTTAAAG
Statistics
Matches: 104, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
117 16 0.15
118 85 0.82
119 3 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACATTTCCCCAAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAAT
TGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGGAAACTTTGATTTCCAA
Found at i:5485935 original size:14 final size:14
Alignment explanation
Indices: 5485916--5485973 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5485906 TTATTTAAAG
*
5485916 AAAATAGAATAATA
1 AAAATAGAAAAATA
5485930 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
5485944 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
5485959 AAAAT--AAAAATA
1 AAAATAGAAAAATA
5485971 AAA
1 AAA
5485974 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5485943 original size:17 final size:17
Alignment explanation
Indices: 5485923--5485973 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
5485913 AAGAAAATAG
5485923 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
5485940 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
5485958 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
5485974 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:5485982 original size:17 final size:16
Alignment explanation
Indices: 5485960--5486000 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
5485950 AGTAAAACAA
5485960 AAATAAAAATAAAATT
1 AAATAAAAATAAAATT
*
5485976 AAGATAAAAATAATATT
1 AA-ATAAAAATAAAATT
5485993 AAATAAAA
1 AAATAAAA
5486001 CTAATCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (16 bp):
AAATAAAAATAAAATT
Found at i:5487062 original size:10 final size:10
Alignment explanation
Indices: 5487047--5487098 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
5487037 ATATTACAGG
5487047 AAAAATAATA
1 AAAAATAATA
5487057 AAAAATAAT-
1 AAAAATAATA
*
5487066 AAAAATAAAA
1 AAAAATAATA
*
5487076 AATAAATTATA
1 AA-AAATAATA
* *
5487087 ATATATAATA
1 AAAAATAATA
5487097 AA
1 AA
5487099 TATACAACTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 8 0.24
10 18 0.55
11 7 0.21
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (10 bp):
AAAAATAATA
Found at i:5487100 original size:4 final size:4
Alignment explanation
Indices: 5487049--5487197 Score: 64
Period size: 4 Copynumber: 36.8 Consensus size: 4
5487039 ATTACAGGAA
* *
5487049 AAAT -AAT AAA- AAAT AATAA AAAT AAA- AAAT AAAT -TAT AATAT ATAAT
1 AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT
* * * * *
5487096 AAAT ATAC AACT ATAT AAAT AAAAT ACATAT AAAT ATTAAC AGAA- AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT A-A-AT AAAT A--AAT A-AAT AAAT
*
5487145 AAAT AAAT AAAT AAAT AAAT AAA- AATAT ACAT ATAAT -AAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT AAAT AAAT AAAT
5487192 -AAT AAA
1 AAAT AAA
5487198 ATACATAAAA
Statistics
Matches: 111, Mismatches: 16, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
3 24 0.22
4 60 0.54
5 20 0.18
6 7 0.06
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:5487173 original size:61 final size:65
Alignment explanation
Indices: 5487073--5487192 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 65
5487063 AATAAAAATA
*
5487073 AAAAATAAATTATAATATATAATAAATATACAACTATATAAATAAAATACAT-ATAAATATTAAC
1 AAAAATAAATAATAATATATAATAAATATACAAC-ATATAAATAAAATA-ATAATAAATATTAAC
5487137 AG
64 AG
* *
5487139 AAAAATAAATAAATAA-ATA-AATAAATA-A-AA-ATATACATATAATAATAATAAATA
1 AAAAATAAAT-AATAATATATAATAAATATACAACATATAAATAAAATAATAATAAATA
5487193 ATAAAATACA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
60 2 0.04
61 19 0.39
63 2 0.04
64 1 0.02
65 8 0.16
66 13 0.27
67 4 0.08
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (65 bp):
AAAAATAAATAATAATATATAATAAATATACAACATATAAATAAAATAATAATAAATATTAACAG
Found at i:5487188 original size:27 final size:27
Alignment explanation
Indices: 5487113--5487209 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
5487103 CAACTATATA
* * *
5487113 AATAAAATACATATAAATATTAACAGAAA
1 AATAAAATACATA-AAATAATAATA-AAT
*
5487142 AAT-AAATAAAT-AAAT-A-AATAAAT
1 AATAAAATACATAAAATAATAATAAAT
*
5487165 AA-AAATATACATATAATAATAATAAAT
1 AATAAA-ATACATAAAATAATAATAAAT
5487192 AATAAAATACATAAAATA
1 AATAAAATACATAAAATA
5487210 CAAAAGAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
23 6 0.11
24 8 0.15
25 3 0.05
26 5 0.09
27 20 0.36
28 10 0.18
29 3 0.05
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (27 bp):
AATAAAATACATAAAATAATAATAAAT
Found at i:5487206 original size:92 final size:92
Alignment explanation
Indices: 5487035--5487206 Score: 228
Period size: 92 Copynumber: 1.9 Consensus size: 92
5487025 TAAATCAAAA
5487035 AAATATTACAGGAAAAATAATAAAAAATAATAAAAATAAAAAATAAATTATAATATATAATAAAT
1 AAATATTACAGGAAAAATAATAAAAAATAATAAAAATAAAAAATAAATTATAATATATAATAAAT
* *
5487100 ATACAACTATATAAATAAAATACATAT
66 ATACAAATACATAAATAAAATACATAT
* *
5487127 AAATATTAACA-GAAAAATAAATAAATAAATAA-ATAAATAAAAATATACA-TATAATA-ATAAT
1 AAATATT-ACAGGAAAAAT-AATAAA-AAATAATAAAAATAAAAA-ATAAATTATAATATATAAT
5487188 AAATAATA-AAATACATAAA
62 AAAT-ATACAAATACATAAA
5487207 ATACAAAAGA
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
92 32 0.45
93 29 0.41
94 10 0.14
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (92 bp):
AAATATTACAGGAAAAATAATAAAAAATAATAAAAATAAAAAATAAATTATAATATATAATAAAT
ATACAAATACATAAATAAAATACATAT
Found at i:5487419 original size:7 final size:7
Alignment explanation
Indices: 5487407--5487470 Score: 76
Period size: 7 Copynumber: 8.9 Consensus size: 7
5487397 AACATTGTCA
5487407 TTTTTTG
1 TTTTTTG
5487414 TTTTTT-
1 TTTTTTG
*
5487420 TTTGTGTCTT
1 TTT-T-T-TG
5487430 TTTTTTG
1 TTTTTTG
5487437 TTTTTTG
1 TTTTTTG
*
5487444 TCTTTTG
1 TTTTTTG
5487451 TTTTTTG
1 TTTTTTG
5487458 TTTTTTG
1 TTTTTTG
5487465 TTTTTT
1 TTTTTT
5487471 TTACCAAAGC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.06
7 40 0.80
8 2 0.04
9 2 0.04
10 3 0.06
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.84
Consensus pattern (7 bp):
TTTTTTG
Found at i:5487461 original size:20 final size:19
Alignment explanation
Indices: 5487409--5487462 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 19
5487399 CATTGTCATT
*
5487409 TTTTGTTTTTTTTTGTGTC
1 TTTTGTTTTTTTTTTTGTC
*
5487428 TTTT-TTTTGTTTTTTGTC
1 TTTTGTTTTTTTTTTTGTC
5487446 TTTTGTTTTTTGTTTTT
1 TTTTGTTTTTT-TTTTT
5487463 TGTTTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 16 0.53
19 9 0.30
20 5 0.17
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (19 bp):
TTTTGTTTTTTTTTTTGTC
Found at i:5487698 original size:42 final size:41
Alignment explanation
Indices: 5487482--5487898 Score: 609
Period size: 41 Copynumber: 10.0 Consensus size: 41
5487472 TACCAAAGCA
***
5487482 CCTCTAAACAGAGGCTTAACGACTTTGAGAAACATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATTGCT
*
5487525 CCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
* * *
5487566 CCTTTAAATAGAGGCACCACGACTTTGAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
* *
5487607 CCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
* *
5487648 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCT
* *
5487690 CCTCTAAACAGAGGCACTACGACTTTGAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
* *
5487731 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCT
* *
5487773 CCTTTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATTGCT
5487815 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
* *
5487856 CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCT
5487898 C
1 C
5487899 ATTGACAATC
Statistics
Matches: 343, Mismatches: 27, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
41 184 0.54
42 136 0.40
43 23 0.07
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
Found at i:5487715 original size:83 final size:82
Alignment explanation
Indices: 5487482--5487898 Score: 611
Period size: 83 Copynumber: 5.0 Consensus size: 82
5487472 TACCAAAGCA
***
5487482 CCTCTAAACAGAGGCTTAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCACGA
1 CCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCACGA
5487547 CTTTTG-AAAATAAATTGCT
64 C-TTTGAAAAATAAATTGCT
* * * *
5487566 CCTTTAAATAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCATGACT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACT
5487631 TTGAAAAATAAATTGCT
66 TTGAAAAATAAATTGCT
* * *
5487648 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACTACGAC
1 CCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC
5487713 TTTGAAAAATAAATTGCT
65 TTTGAAAAATAAATTGCT
* * *
5487731 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTTTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC
*
5487796 TTTGAGAAAGTAAATTGCT
65 TTTGA-AAAATAAATTGCT
*
5487815 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC-
* *
5487880 TTTGGAAAGTAAATTGCT
65 TTTGAAAAATAAATTGCT
5487898 C
1 C
5487899 ATTGACAATC
Statistics
Matches: 307, Mismatches: 22, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
81 4 0.01
82 65 0.21
83 178 0.58
84 60 0.20
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (82 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACT
TTGAAAAATAAATTGCT
Found at i:5489177 original size:17 final size:17
Alignment explanation
Indices: 5489152--5489194 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
5489142 AATCTCTTTT
*
5489152 TTTCATTTTCTCATTTC
1 TTTCTTTTTCTCATTTC
* **
5489169 TTTCTTTTTTTTTTTTC
1 TTTCTTTTTCTCATTTC
5489186 TTTCTTTTT
1 TTTCTTTTT
5489195 TTTTCCTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTTTTTCTCATTTC
Found at i:5489182 original size:22 final size:21
Alignment explanation
Indices: 5489146--5489233 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 21
5489136 AATTTGAATC
**
5489146 TCTTTTTTTCATTTTCTCATT
1 TCTTTTTTTTTTTTTCTCATT
*
5489167 TCTTTCTTTTTTTTTTTTC-TT
1 TCTTT-TTTTTTTTTTCTCATT
* *
5489188 TCTTTTTTTTTCCTTTTTTCATCA
1 TCTTTTTTTTT--TTTTCTCAT-T
* *
5489212 TCTTTTTTATCTTTTCTCATT
1 TCTTTTTTTTTTTTTCTCATT
5489233 T
1 T
5489234 TTCATCCATT
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
20 6 0.11
21 13 0.24
22 25 0.46
23 1 0.02
24 9 0.17
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (21 bp):
TCTTTTTTTTTTTTTCTCATT
Found at i:5489185 original size:13 final size:13
Alignment explanation
Indices: 5489169--5489206 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
5489159 TTCTCATTTC
5489169 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
5489182 TTTCTTTCTTTTTT
1 TTTCTTT-TTTTTT
5489196 TTTCCTTTTTT
1 TTT-CTTTTTT
5489207 CATCATCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 12 0.52
15 4 0.17
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:5489195 original size:17 final size:17
Alignment explanation
Indices: 5489165--5489198 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
5489155 CATTTTCTCA
5489165 TTTCTTTCTTTTTTTTT
1 TTTCTTTCTTTTTTTTT
5489182 TTTCTTTCTTTTTTTTT
1 TTTCTTTCTTTTTTTTT
5489199 CCTTTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTCTTTCTTTTTTTTT
Found at i:5489206 original size:8 final size:7
Alignment explanation
Indices: 5489149--5489207 Score: 50
Period size: 8 Copynumber: 8.0 Consensus size: 7
5489139 TTGAATCTCT
5489149 TTTTTTC
1 TTTTTTC
*
5489156 ATTTTCTC
1 -TTTTTTC
5489164 ATTTCTTTC
1 -TTT-TTTC
5489173 TTTTTT-
1 TTTTTTC
5489179 TTTTTTC
1 TTTTTTC
5489186 TTTCTTT-
1 TTT-TTTC
5489193 TTTTTTCC
1 TTTTTT-C
5489201 TTTTTTC
1 TTTTTTC
5489208 ATCATCTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
6 9 0.20
7 10 0.23
8 22 0.50
9 3 0.07
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:5489215 original size:24 final size:22
Alignment explanation
Indices: 5489143--5489219 Score: 68
Period size: 24 Copynumber: 3.4 Consensus size: 22
5489133 TTTAATTTGA
* *
5489143 ATCTCTTTTTTTCATTTTCTCAT
1 ATCTTTTTTTTTC-TTTTTTCAT
*
5489166 TTCTTTCTTTTTT-TTTTTTC-T
1 ATCTTT-TTTTTTCTTTTTTCAT
*
5489187 TTCTTTTTTTTTCCTTTTTTCAT
1 ATCTTTTTTTTT-CTTTTTTCAT
5489210 CATCTTTTTT
1 -ATCTTTTTT
5489220 ATCTTTTCTC
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
20 6 0.13
21 7 0.16
22 13 0.29
23 5 0.11
24 14 0.31
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.75
Consensus pattern (22 bp):
ATCTTTTTTTTTCTTTTTTCAT
Found at i:5493196 original size:59 final size:58
Alignment explanation
Indices: 5493104--5493398 Score: 423
Period size: 58 Copynumber: 5.0 Consensus size: 58
5493094 TCTTGTGTAG
5493104 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
5493163 GGAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAA
* * **
5493221 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
***
5493281 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
5493339 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTT-ATTTTTA
5493399 TTTAAAGAAA
Statistics
Matches: 211, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
57 3 0.01
58 92 0.44
59 62 0.29
60 47 0.22
61 7 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:5493329 original size:118 final size:117
Alignment explanation
Indices: 5493106--5493395 Score: 440
Period size: 118 Copynumber: 2.5 Consensus size: 117
5493096 TTGTGTAGGG
**
5493106 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
* * *
5493170 TGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAAGA
65 TGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
*
5493223 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
* *
5493288 TGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAAGG
65 TGATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
*
5493341 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
5493396 TTATTTAAAG
Statistics
Matches: 159, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
116 2 0.01
117 46 0.29
118 98 0.62
119 13 0.08
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATT
GATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
Found at i:5493425 original size:14 final size:14
Alignment explanation
Indices: 5493406--5493463 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5493396 TTATTTAAAG
*
5493406 AAAATAGAATAATA
1 AAAATAGAAAAATA
5493420 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
5493434 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
5493449 AAAAT--AAAAATA
1 AAAATAGAAAAATA
5493461 AAA
1 AAA
5493464 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5493433 original size:17 final size:17
Alignment explanation
Indices: 5493413--5493463 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
5493403 AAGAAAATAG
5493413 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
5493430 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
5493448 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
5493464 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:5493472 original size:17 final size:16
Alignment explanation
Indices: 5493450--5493489 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5493440 AGTAAAACAA
*
5493450 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
5493466 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
5493483 AAATAAA
1 AAATAAA
5493490 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Done.