Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 48 of 120
Found at i:5494540 original size:4 final size:4
Alignment explanation
Indices: 5494531--5494643 Score: 66
Period size: 4 Copynumber: 26.8 Consensus size: 4
5494521 GAAAAAGAAA
* * * *
5494531 AAAT AAAT AAAT AAAT AAAT AAAT -TAT AATAT ATAAT AAAT ATAG AACT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT AAAT AAAT AAAT
* * * * *
5494580 ATAT AAAT AAAAT ACCTAT AAAT ATTAAC AAAA AAAT AAAT AAAT AAAA
1 AAAT AAAT -AAAT A--AAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT
*
5494629 AAAT AAAT AAGT AAA
1 AAAT AAAT AAAT AAA
5494644 AATATACTTA
Statistics
Matches: 82, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
3 2 0.02
4 63 0.77
5 10 0.12
6 7 0.09
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:5494570 original size:17 final size:20
Alignment explanation
Indices: 5494545--5494590 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 20
5494535 AAATAAATAA
*
5494545 ATAAATAAAT-TATAA-TAT
1 ATAAATAAATATAGAACTAT
5494563 AT-AATAAATATAGAACTAT
1 ATAAATAAATATAGAACTAT
5494582 ATAAATAAA
1 ATAAATAAA
5494591 ATACCTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 6 0.25
19 5 0.21
20 6 0.25
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAAATAAATATAGAACTAT
Found at i:5494572 original size:37 final size:38
Alignment explanation
Indices: 5494531--5494632 Score: 91
Period size: 41 Copynumber: 2.6 Consensus size: 38
5494521 GAAAAAGAAA
*
5494531 AAATAAATAAATAAATAAATAAAT-TAT-AATATATAAT
1 AAATAAATAAATAAATAAATAAATCTATAAATAT-TAAC
* * * *
5494568 AAATATAGAACTATATAAATAAAATACCTATAAATATTAAC
1 AAATAAATAAATAAATAAAT-AAAT--CTATAAATATTAAC
* *
5494609 AAAAAAATAAATAAATAAAAAAAT
1 AAATAAATAAATAAATAAATAAAT
5494633 AAATAAGTAA
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
37 16 0.33
38 4 0.08
40 4 0.08
41 20 0.41
42 5 0.10
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (38 bp):
AAATAAATAAATAAATAAATAAATCTATAAATATTAAC
Found at i:5494644 original size:16 final size:16
Alignment explanation
Indices: 5494531--5494645 Score: 77
Period size: 16 Copynumber: 6.8 Consensus size: 16
5494521 GAAAAAGAAA
*
5494531 AAATAAATAAATAAAT
1 AAATAAATAAAAAAAT
* * *
5494547 AAATAAATTATAATAT
1 AAATAAATAAAAAAAT
* * *
5494563 ATAATAAATATAGAACT
1 A-AATAAATAAAAAAAT
* *
5494580 ATATAAATAAAATACCTAT
1 AAATAAATAAAA-A--AAT
*
5494599 AAATATTAACAAAAAAAT
1 AAATA--AATAAAAAAAT
5494617 AAATAAATAAAAAAAT
1 AAATAAATAAAAAAAT
*
5494633 AAATAAGTAAAAA
1 AAATAAATAAAAA
5494646 TATACTTATA
Statistics
Matches: 73, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
16 43 0.59
17 11 0.15
18 7 0.10
19 5 0.07
20 1 0.01
21 6 0.08
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (16 bp):
AAATAAATAAAAAAAT
Found at i:5494681 original size:16 final size:16
Alignment explanation
Indices: 5494535--5494682 Score: 61
Period size: 16 Copynumber: 8.7 Consensus size: 16
5494525 AAGAAAAAAT
5494535 AAATAAATAAATAAATA
1 AAATAAATAAAT-AATA
* *
5494552 AATTATAATATATAATA
1 AAATA-AATAAATAATA
*
5494569 AATATAGAACTATATAAATA
1 AA-ATA-AA-TAAAT-AATA
* *
5494589 AAATACCTATAAATATTAA
1 AAATA--AATAAATAAT-A
*
5494608 CAAAAAAATAAATAAATA
1 -AAATAAATAAAT-AATA
5494626 AAA-AAATAAATAAGTA
1 AAATAAATAAATAA-TA
* * *
5494642 AAA-ATAT-ACTTATA
1 AAATAAATAAATAATA
5494656 ATAAT-AATAAATAATA
1 A-AATAAATAAATAATA
*
5494672 AAATACATAAA
1 AAATAAATAAA
5494683 ATACAAAAGA
Statistics
Matches: 100, Mismatches: 18, Indels: 27
0.69 0.12 0.19
Matches are distributed among these distances:
14 3 0.03
15 12 0.12
16 27 0.27
17 13 0.13
18 19 0.19
19 15 0.15
20 11 0.11
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (16 bp):
AAATAAATAAATAATA
Found at i:5494685 original size:82 final size:82
Alignment explanation
Indices: 5494528--5494685 Score: 189
Period size: 82 Copynumber: 1.9 Consensus size: 82
5494518 CAAGAAAAAG
* * * *
5494528 AAAAAATAAATAAATAAATAAATAAATTATAATATATAATAAATATAGAACTATATAAATAAAAT
1 AAAAAATAAATAAATAAAAAAATAAATAATAAAATATAATAAATATAGAACTAAATAAATAAAAT
*
5494593 ACCTATAAATATTAACA
66 ACATATAAATATTAACA
* *
5494610 AAAAAATAAATAAATAAAAAAATAAATAAGTAAAAATATACTTATAATA-ATAA-TAAAT-AATA
1 AAAAAATAAATAAATAAAAAAATAAATAA-T-AAAATATA-ATA-AATATAGAACTAAATAAATA
5494672 AAATACATA-AAATA
62 AAATACATATAAATA
5494686 CAAAAGAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
82 32 0.49
83 13 0.20
84 11 0.17
85 5 0.08
86 4 0.06
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (82 bp):
AAAAAATAAATAAATAAAAAAATAAATAATAAAATATAATAAATATAGAACTAAATAAATAAAAT
ACATATAAATATTAACA
Found at i:5495568 original size:26 final size:25
Alignment explanation
Indices: 5495530--5495581 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
5495520 GTTGACTTAG
5495530 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
5495555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
5495581 G
1 G
5495582 ATTGGACCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:5496466 original size:26 final size:26
Alignment explanation
Indices: 5496430--5496482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5496420 GTTGACTTAG
5496430 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5496456 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5496482 G
1 G
5496483 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5496744 original size:901 final size:902
Alignment explanation
Indices: 5494807--5505852 Score: 12225
Period size: 910 Copynumber: 12.4 Consensus size: 902
5494797 TACAGGTAGG
* * *
5494807 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
5494872 CTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
5494936 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
5495000 AAATTGTCACAAAACCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
5495065 ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGACAAAATTTAAAAAAATCCT
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * *
5495130 GAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGATTCCTCTTGCCATGAAACTTCA
326 GAACCGT-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
5495194 CGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACA-AAAAC
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA-
* *
5495258 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * ** * *
5495323 TGGCCGGC---GT---AG--TGACCGCCCGCCTACTTGTTTCATCGGCTGGCTTAGGCATACGGA
519 TGGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* *
5495380 GTTCATTCCTAGTCTAAGATCGCACCAGACCGAGGGTTGC-GGCAGCAAGATCGGTAGCACGTAG
584 GTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAG
** * *
5495444 AGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGACTGAGCGCCCGCACGC
649 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
5495509 TCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
714 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
5495573 CAGTCTAAGATTGGACCGCACCGAGGGTTGCGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTG
779 CAGTCTAAGATCGGACAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
5495638 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGTAGCATCGCCGGAGAACTTGACCGGCGGC
843 CCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-ACGGC
* * * * * *
5495699 ATTGGGGTTCCGGCGATCGGAGGGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGCCGTTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
5495764 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
5495829 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5495893 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGCAAGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
5495958 ATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
5496023 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
326 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
5496088 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
* *
5496153 ATGAAGATGTGCCTAAACCCACCTACCACCCAATTGATCCACGGCTTGCGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
5496218 GCCGGCATAGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGGAGT
521 GCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* **
5496283 TCATTCCCAGTCTAAGATCCCACCAGACCGAGGGTT-CTGGCAGCAAGATCGGTAGCACATAGAG
586 TCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAGAG
* *
5496347 GGGGACCCGGCCGATCCCCGG-TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTC
651 GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
5496411 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCGCA
716 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
5496476 GTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
781 GTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
5496541 GCATTTTTCTTTGCCGAGGCACCATCGACGGAGCGTCACCGGAGAACCTGACCTACAGG-
845 GCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-AC-GGC
**
5496600 ATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
5496665 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
5496730 ATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
5496795 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGTCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
5496860 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAC
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * * * *
5496925 AAACCGCAGAATGTTTCGAAAATCGTAAAAAATAGAGAACGAGTCATCTTGCCATGAAACTGCAC
326 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * **
5496990 GTGAAGGCTTAAGGGACCACTGTATTAAGTTACAAGCCATAAAAATGGCATTGGAATGTAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
* *
5497055 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * **
5497120 GCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGTCCGCCCGTCCGTCCGCTCATTTTGTCGGTTGG
521 GCCGGCATAGT----GCCCG-CC-T--G-C---CCGCCCG--C--CCGCTCGTTTCATCGGTTGG
*
5497185 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCAAGGGTTGC-GGCAGCAAGA
570 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGA
* ** *
5497249 TCGGTGGCACGCAGAGGGGGACTTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
635 TCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
5497314 GAGCGCCCGTACGCTCGCTTCGTGAGTTGACTTAGGCATACAGAGTTGATTCCCAGTTTAAGCAT
700 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
5497379 ACGGAGTTCATTCCTAGTCTAAGATCAGACCGTACCGAGGGTTGTGGCAGCACATGCTGGTCTCG
765 ACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
5497444 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCT
829 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCT
*
5497509 GATCGACGGC
894 GA-CCACGGC
* *
5497519 ATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGTTAGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
5497584 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACAACCCCTCAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
5497649 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
5497714 CAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTT-TGTATGCCAAGAA
195 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAA
* * *
5497778 AAATACAAGGATC-TCGTCTACCAAGCTTGTGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAT
259 AAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
5497842 CCCTAACCGTAAAAAGTTTTGAAAATCGTGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTT
323 CCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
5497907 CACGTGAAGGGTTAAGGGACCATTTTATGAATTTACAAGGCATAAAAATGGCATTGGCATGTAGA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
*
5497972 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * ** * * *
5498037 CTGGTTGATGTAGTACCCGCCCGCCCGCCCACCCGCCCACTCGTTTCATCGGTTGGCTTAGGCAT
518 CTGGCCG--GCA-TA-GTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * *
5498102 ACGGAATTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTG-TGGCAGCAGGATCGGCAGCA
579 ACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCA
* * * *
5498166 CGCAGAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
644 CGCAGA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
5498231 GCACACTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTT
708 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
5498296 CATTCCCAGTCGAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
773 CATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * * * * * **
5498361 CTGGTGATGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACCGGTG
837 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-ACG
5498426 GC
901 GC
** * *
5498428 ATTGGGGTTCCGATGATAGGGAGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
5498493 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACAACCCCTCAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
5498558 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5498623 CAAATGGACTCAAAATCTTGTACACTTCT-AGTTTTTAGCTAAATTTTTTGTGTGCATGCCAACA
195 CAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTT-TGTGCATGCCAACA
** * *
5498687 TTAATACAAGGATC-TCGTCTACCAAGCTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
258 AAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
5498751 TCCCGAACCGTAAAAAGTTTCGAACATCATAAAAAATGGAAAACGAGTCGTCTTGCCATGAAACT
322 TCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
5498816 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
387 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* *
5498881 AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
452 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
5498946 TCTGGCCGGCATAGTCCCCGCCCGCTCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACG
517 TCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * ** * ** *
5499011 AAGTTCTTTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCT-GCAG-TAGGGCTGGCAGCACG
582 GAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATC-GGTAGCACG
* * * * *
5499074 CAGAGGGGGACTCGACCGATCCCCGGCTTGGGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCA
646 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * ** **
5499139 CCCTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCAT
711 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
5499204 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTG
776 TCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * * *
5499269 GTGATGCATTTTTCTTCGTCGGGGCACCATC-ATCGGAGCACCACCGAAGAACCTGATCAGCGGC
840 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGA-CGGAGCATCGCCGGAGAACCTGACCA-CGGC
** * *
5499333 ATTAAGGTTTCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
1 ATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
5499398 TACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAATTGACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5499463 GCATTTGAGATTTTGCAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *** ** ** *
5499528 TCAAA-GGATCAC---GTC---TAC-C---AAGTATGGGGCCAAAAATCTTT-T-C--G--AA-A
194 TCAAATGG-TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* ** * * * * * * **
5499575 AAATTTTA-AAAAATCTTGAACCGTA-AAAATTT-----CAAAAAT-CAT--G-AAAAA-TAGAA
258 AAA--ATACAAGGATCATG--TC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
5499628 AATGAGTCGTCTTGCCATGAAACC-TCACGCGAAGGCTTTAGAGACCATTGTATGAATTTACAAG
318 AA--A---ATC---CC--G-AACCGT-A---AAAAG-TTTCGA-A-AATCG--TG-A---A-AA-
* * ** * * * * ** *
5499692 CCATA-AAAATG-G-CG--TTGGCATGCAAAAAT-ATGAAGATGTGCCTAA---ACCCA-CATAC
357 --ATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACG-TGAAG-GCTTAAGGGA-CCATTGTAT
* *** * **** * * * * ****** * * ***
5499747 CACCCTATCAATCCAT-GGCTTGCGCATCTCGTCTCTCTGGCCGCGCGTAG-TG-CCCGTCCGCC
416 GAATTTA-CAAGCCATAAAAATG-GCAT-T-GGCAC-ATAGAAATATGAAGATGTGCC-TAAACC
* * * * * ** * * * *
5499809 CGCCTGCC-CGC--TCGTTCCATTGG-TTG-GC-T-TAGGCAT-AC-GG-AGTTCAT--T-CCC-
475 CACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTC-TCTCTGGCCG-GCATAGTGCCCG
* ** *** ** * * * ** *
5499860 ACT-CTAAGATTGGAC-CT-GATTGA-GGGTTACGGCAGCAGG-AT-CGGCAG--CA--CACAG-
537 CCTGC-CCGCCCGCCCGCTCGTTTCATCGGTT--GGC-TTAGGCATACGG-AGTTCATTCCCAGT
** * * ** ** * * * ****** *
5499914 ---AG-GGGGACCCGACCGA---TCCCT-G-A-CTTGCTC---ATCCCGCCCCTCTGG--TCGGC
597 CTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGC
* * * * ** ** * * * * * *
5499964 TGAGCGCCC-G--T--ACAT-TCG--TTTCATGGGTTGACTTAG-GCATACGGAC-TTC-ATTC-
662 CGATC-CCCGGCTTGCGCATCCCGCCCCTC-T-GGCCGGCTGAGCGC--CCGCACGCTCGTTTCG
*** * *
5500017 CCAG-T--C-TAAGCATACGAAGTTCATTCCCAGT-T-----TA---AG---A-T--C-G-----
722 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
*
5500057 GA-C---CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
787 GATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * **
5500118 TCTTCG-C--CG-A--GTC-AC----CATCGCCGGAGAACCTGACCGGTGGC
852 TCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-ACGGC
* * * * * * *
5500159 ATTAGGGTTCTGACGATCGGGGGGTCGGGGGCGGTGTGCGCACATGATATGCGATGGGTGCTTGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5500224 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
5500289 CATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAGATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5500354 CAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
195 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * **
5500419 AATACAAGGATCATGACTACCAAGATTGGGACCAAAACTCCTTCCGAAAAAATTTTAGGAAATCC
260 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
5500484 CGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCG
325 CGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
5500549 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAAAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
* *
5500614 TATGAAGATGTGCCTAAACCCACTTACCACCCTATCGGTCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** * * * *
5500679 -----GCAAAGTG-TAG--TGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCCTAGGCATACGGAG
520 GGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * * * * *
5500736 TTCATTCCCAGTCTAAGATCAG-ACCAAACTGAGGATT-ATGGCAGCAGGATCAGCAGCATGTAG
585 TTCATTCCCAGTCTAAGATC-GCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAG
** * ** * * *
5500799 AGGGGG-CCCGATCGATCGCCGATTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGC
649 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * * * *
5500863 TCATTTCGCGGGTTGAATTACGCATACGAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCC
714 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * * * *
5500928 CAGTCTAAGATCAAACTAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTAGTG
779 CAGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
5500993 CCGCATTTTTCTTCGCCGAGTCACCATC-ACCGGAGCATCACCGGAGAACCTAACCGGCGGC
843 CCGCATTTTTCTTCGTCGGGGCACCATCGA-CGGAGCATCGCCGGAGAACCTGACC-ACGGC
* ** * *
5501054 ATTGGGGTTCCGGCGATCGGGGTGGTTGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGATA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
5501119 GTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
5501184 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGAGACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5501249 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
5501314 ATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * * *
5501379 AAACCGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAT
326 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
5501444 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
* *
5501509 ATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * * * * *
5501574 GCCGACGCAGTG--C-CC-GCCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGACT
521 GCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* *** * * * * *
5501635 TCATTCCCAGTCTAAGATCAG-ATCA-ATTAAGGGTTGC-AGCAGTAGGATCGGTAGCATGTAGA
586 TCATTCCCAGTCTAAGATC-GCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAGA
** * ** * * *
5501697 GGGGG-CCCGATCGATCGCCGATTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCT
650 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * *
5501761 CATTTCGCGGGTTGAATTACGCATACGAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCC
715 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** * * *
5501826 AGTCTAAGATCAAACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGAGCATGTGCTGGTGC
780 AGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
5501891 CGCATTTTTCTTCGCCGAGTCACCATC-ACCGGAGCATCACCGGAGAACCTAACCGGCGGC
844 CGCATTTTTCTTCGTCGGGGCACCATCGA-CGGAGCATCGCCGGAGAACCTGACC-ACGGC
* ** *
5501951 ATTGGGGTTCCGGCGATCGGGGTGGTTGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5502016 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCTCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
5502081 ATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGCGTCGGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
5502146 AAATGGTCACTAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTACATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *** * *
5502211 TTAGAAGGATCATGTCTACCAAGTTTGGTTACAAAAC-CCGCTCCGAAAAAATTTTAAAAAATCT
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCC
* * ** *
5502275 CGAATCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
325 CGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
**
5502340 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
5502405 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
5502470 GGCCGGCACAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
520 GGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
*
5502531 TTCATTCCCAGTCTAAGATCAG-ACC-GAACCAAGGGTTGC-GGCAGCAAGATCGGTAGCACGCA
585 TTCATTCCCAGTCTAAGATC-GCACCAG-ACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCA
* * * * * * *
5502593 GAGGGGGACCCGGTCGATCCCTGTCTTCCGTATCCCACCCCTCTGGCCGACTGAGCGCCCGCACG
648 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
5502658 CTCGTTT--T--G-TG-----GG--TA--GA---C-TT---AG-----GCATACGGAGTTCATTC
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
5502697 CCAGTCTAAGATCGGACAGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGT
778 CCAGTCTAAGATCGGACA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * * **
5502762 GCCGTATTTTTCTTCGCCAGTGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGTGGC
842 GCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-ACGGC
5502824 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
5502889 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCTTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
5502954 ATTTCAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTTTGAAATGGGGAGACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5503019 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *** * * * *
5503084 ATACAAGCATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTTAAAAATCCT
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * *
5503149 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCCTGCCATGAAACTTCAC
326 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
5503214 GTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGCCACACAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
5503279 ATGAAGATGTGCCTAAACCCACCT---A--C---CGATCCACGGCTTGCGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
5503336 GCCGGCGTAGTGCCCACCCGCCCACCCGCACGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGT
521 GCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *
5503401 TCATTCCCAGTCTAAGATTGGACC-GAACTGAGGGTTG-TGGCAGCAGGATTGACAACACGCAGA
586 TCATTCCCAGTCTAAGATCGCACCAG-ACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAGA
* * * * * **
5503464 GGGGGACCCGGTCGATCCCTGGCTTGCACATCCCGCCCTTCTGGTCGGCTGAGCGCCTACACGCT
650 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * ** * *
5503529 CGTTTCGTGGGTTGACCTAGGCATACAGAGTTTGTTCCTAGTCTAAACATACGGAGTTCATTCCC
715 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
5503594 AGTCTAAGATCGGATTAGACCAATGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGA
780 AGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * **
5503659 CGTATTTTTCTTCGTCGGGGCTCTATC-ACTGGAGCATCACCGGAGAACCTGACCGGTGGC
844 CGCATTTTTCTTCGTCGGGGCACCATCGAC-GGAGCATCGCCGGAGAACCTGACC-ACGGC
* * * *
5503719 ATTGGGATTCC-GTGATC-GGGGGGCCGAAGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
5503782 ACTTGGCCCTTATAGTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
5503847 CATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCCGAAATGAGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** *
5503912 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTTCATGCCGAA-AA
195 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAA
* * * *
5503976 AAATACAAGGATCACGTCTACCAAGCTTGGGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATC
259 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
5504041 CCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TC
324 CCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
5504105 ACGTCAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
* * * *
5504170 ATATTAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGCGCATGCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * *
5504235 TAGCTGGCGTAGTGCCCGTCC-GCCCGCACGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAG
519 TGGCCGGCATAGTGCCCG-CCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * ** * *
5504299 AGTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTGC-GATAGCAAGATTGGCAGCACGCA
583 AGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCA
* * ** * ** *
5504363 GAGGGGGGCTCGATCGATCCCCGGCTTGCCCATCATGCCCCTCTGGCCGACTGAGCGCCCGCACG
648 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
5504428 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
5504493 CCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
778 CCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
5504558 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACAGACGAC
842 GCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGAC-CACGGC
* * * *
5504620 ATTGGGGTTCCGACGATCGGAGGGCCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGG
1 ATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA-------TGGG
* *
5504685 TGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCT
58 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
5504750 TAAACAACATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTTAAATGGGGACA
123 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
5504815 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGC
188 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* **
5504880 CAA-AAAAAAACAAGGATCATGTCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATTTTAA
253 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * * *
5504944 AAAATCCCAAATGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
318 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
5505009 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGTATTGGCAA
383 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
5505074 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
448 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * * * * *
5505139 TCTCTCTGGCCGGCGTAATGCCTGCCTGCTCGCCCGCGCGCTTGTTTCGTTGATTGGCTTAGGCG
513 TCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * * * *
5505204 TACGGAGTTCATTCCCAGTCTAAGATTGCATCGGACTGAGGGTTGC-GGTAGCAGGATGGGCAGC
578 TACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGC
* * * * ** * * * *
5505268 ATGCAAAGGGGGGCCTGGTTGATCCCCGGCTTGTGCATCCTGCCCCTATGGCCAGCTGAGCGCCC
643 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
5505333 GTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
708 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
5505398 CATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTG
773 CATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
5505463 CTGGTGCCGCATTTTTCTTCGTCGGTGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCG
837 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACC-ACG
5505528 GC
901 GC
* * * *
5505530 ATTAGGGTTCTGGCGATCGGGGGGGTCGGGAGGGTGTACGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * * *
5505595 AGTTGTCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAGCTCACACTCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
5505660 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTTTCTAAAATGGGGAAACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
5505725 CAAATGGTCACAAAATCTTGTACACATCGAGTTTTGAGCTGAATTTTTTTGTGCATGACAAAAAA
195 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** * *
5505790 AATACAAGGATCACGTCTACCAGGTTTGAAGCCAAAACTCCTTCTGAAAAGATTTTAAAAAAT
260 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
5505853 TCACCCGTTC
Statistics
Matches: 8699, Mismatches: 1121, Indels: 656
0.83 0.11 0.06
Matches are distributed among these distances:
822 3 0.00
823 5 0.00
824 8 0.00
825 181 0.02
826 55 0.01
827 26 0.00
828 27 0.00
829 14 0.00
830 11 0.00
831 15 0.00
832 4 0.00
833 6 0.00
834 5 0.00
835 15 0.00
836 2 0.00
837 62 0.01
838 13 0.00
839 8 0.00
840 3 0.00
841 14 0.00
842 7 0.00
843 4 0.00
844 8 0.00
845 2 0.00
846 7 0.00
847 8 0.00
848 6 0.00
849 4 0.00
850 1 0.00
851 8 0.00
852 11 0.00
853 6 0.00
854 6 0.00
855 1 0.00
857 2 0.00
858 23 0.00
859 1 0.00
862 1 0.00
863 21 0.00
864 3 0.00
865 41 0.00
866 1 0.00
867 6 0.00
868 10 0.00
869 165 0.02
870 9 0.00
871 2 0.00
872 2 0.00
873 555 0.06
874 13 0.00
875 3 0.00
876 7 0.00
878 2 0.00
879 4 0.00
880 5 0.00
881 13 0.00
882 6 0.00
883 5 0.00
884 70 0.01
885 6 0.00
886 8 0.00
887 4 0.00
888 3 0.00
889 14 0.00
890 8 0.00
891 14 0.00
892 86 0.01
893 519 0.06
894 793 0.09
895 190 0.02
896 24 0.00
897 841 0.10
898 107 0.01
899 61 0.01
900 70 0.01
901 798 0.09
902 340 0.04
903 237 0.03
904 71 0.01
905 273 0.03
906 267 0.03
907 10 0.00
908 99 0.01
909 564 0.06
910 946 0.11
911 1 0.00
912 6 0.00
914 7 0.00
915 1 0.00
916 2 0.00
918 113 0.01
919 229 0.03
920 453 0.05
921 5 0.00
922 1 0.00
923 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCTGGCAGCAAGATCGGTAGCACGCAGAG
GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAACCTGACCACGGC
Found at i:5497385 original size:26 final size:26
Alignment explanation
Indices: 5497349--5497401 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5497339 GTTGACTTAG
* *
5497349 GCATACAGAGTTGATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5497375 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5497401 G
1 G
5497402 ATCAGACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5497782 original size:920 final size:902
Alignment explanation
Indices: 5494807--5499532 Score: 6619
Period size: 920 Copynumber: 5.2 Consensus size: 902
5494797 TACAGGTAGG
* * * *
5494807 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTA
5494872 CTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
5494936 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
5495000 AAATTGTCACAAAACCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
5495065 ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGACAAAATTTAAAAAAATCCT
261 ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * ** * *
5495130 GAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGATTCCTCTTGCCATGAAACTTCA
326 GAACCGT-AAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
5495194 CGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACA-AAAAC
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA-
* *
5495258 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * ** * *
5495323 TGGCCGGCGTAGT-------GAC-CG-CCCGCCTACTTGTTTCATCGGCTGGCTTAGGCATACGG
519 TGGCCGGCATAGTCCCGCCCGCCTCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* *
5495379 AGTTCATTCCTAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAG
584 AGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAG
** * *
5495444 AGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGACTGAGCGCCCGCACGC
649 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
5495509 TCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
714 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
5495573 CAGTCTAAGATTGGACCGCACCGAGGGTTGCGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTG
779 CAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
5495638 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGTAGCATCGCCGGAGAACTTGACCGGCGGC
843 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-GAGAACCTGACCGACGGC
* * * * *
5495699 ATTGGGGTTCCGGCGATCGGAGGGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGC-CGTT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG-T
5495763 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
5495828 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5495892 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGCAAGCCAACAAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
5495957 AATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
260 AATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* *
5496022 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCA
325 CGAACCGTAAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
5496087 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
* *
5496152 TATGAAGATGTGCCTAAACCCACCTACCACCCAATTGATCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
5496217 GGCCGGCATAGTGCCTGCCTGCC-CG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGG
520 GGCCGGCATAGT-CCCGCCCGCCTCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* **
5496280 AGTTCATTCCCAGTCTAAGATCCCACCAGACCGAGGGTT-CTGGCAGCAAGATCGGTAGCACATA
584 AGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGC-GGCAGCAAGATCGGTAGCACGCA
* *
5496344 GAGGGGGACCCGGCCGATCCCCGG-TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACG
648 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
5496408 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
713 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
5496473 GCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
778 CCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * *
5496538 GCCGCATTTTTCTTTGCCGAGGCACCATCGACGGAGCGTCACCGGAGAACCTGACCTACAGG-
842 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-GAGAACCTGACCGAC-GGC
** *
5496600 ATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTA
*
5496665 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
5496730 ATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5496795 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGTCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
5496860 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAC
261 ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * * * * * * *
5496925 AAACCGCAGAATGTTTCGAAAATCGTAAAAAATAGAGAACGAGTCATCTTGCCATGAAACTGCAC
326 GAACCGTAAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * **
5496990 GTGAAGGCTTAAGGGACCACTGTATTAAGTTACAAGCCATAAAAATGGCATTGGAATGTAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
* *
5497055 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* **
5497120 GCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGTCCGCCCGTCCGTCCGCTCATTTTGTCGGTTGG
521 GCCGGCATAGT-CCCGCCCG-CC-T-CGCC---CCGCCCG--C-T-CG----TTTCATCGGTTGG
*
5497185 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCAAGGGTTGCGGCAGCAAGAT
571 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGAT
* ** *
5497250 CGGTGGCACGCAGAGGGGGACTTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
636 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
5497315 AGCGCCCGTACGCTCGCTTCGTGAGTTGACTTAGGCATACAGAGTTGATTCCCAGTTTAAGCATA
701 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
5497380 CGGAGTTCATTCCTAGTCTAAGATCAGACCGTACCGAGGGTTGTGGCAGCACATGCTGGTCTCGG
766 CGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
*
5497445 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTG
830 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-GAGAACCTG
*
5497510 ATCGACGGC
894 ACCGACGGC
*
5497519 ATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGTTAGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
* * *
5497584 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACAACCCCTCAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
5497649 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5497714 CAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTT-TGTATGCCAAGAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAA
* *
5497778 AAATACAAGGATCTCGTCTACCAAGCTTGTGGCCAAAACTCCTTCCGAAAAAAA-TTTAAAAAAT
259 AAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAAT
* * * *
5497842 CCCTAACCGTAAAAAGTTTTGAAAATCGTGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTT
323 CCCGAACCGTAAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
5497907 CACGTGAAGGGTTAAGGGACCATTTTATGAATTTACAAGGCATAAAAATGGCATTGGCATGTAGA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
*
5497972 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** *** *
5498037 CTGGTTGATGTAGTACCCGCCCGCC-CGCCCACCCGCCCACTCGTTTCATCGGTTGGCTTAGGCA
518 CTGGCCGGCATAGT-CCCGCCCGCCTCG--C-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * * *
5498101 TACGGAATTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCA
579 TACGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCA
* * * *
5498166 CGCAGAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
644 CGCAGA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
5498231 GCACACTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTT
708 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
5498296 CATTCCCAGTCGAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
773 CATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * * * **
5498361 CTGGTGATGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACCGGTG
837 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCG-AGAACCTGACCGACG
5498426 GC
901 GC
** * * *
5498428 ATTGGGGTTCCGATGATAGGGAGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
* * * *
5498493 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACAACCCCTCAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
5498558 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
5498623 CAAATGGACTCAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTTGTGTGCATGCCAACAT
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTGCATGCCAACAA
* * * *
5498688 TAATACAAGGATCTCGTCTACCAAGCTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * **
5498753 CCGAACCGTAAAAAGTTTCGAACATCATAAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTC
324 CCGAACCGTAAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTC
5498818 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
* *
5498883 ATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
5498948 TGGCCGGCATAGTCCCCGCCCG-CTCG-CCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACG
519 TGGCCGGCATAGT-CCCGCCCGCCTCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * ** * * ** *
5499011 AAGTTCTTTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCTGCAG-TAGGGCTGGCAGCACGC
583 GAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATC-GGTAGCACGC
* * * * *
5499075 AGAGGGGGACTCGACCGATCCCCGGCTTGGGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCAC
647 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * ** **
5499140 CCTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATT
712 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
5499205 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGG
777 CCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * * *
5499270 TGATGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCACCACCGAAGAACCTGATC-AGCGGC
841 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCG-AGAACCTGACCGA-CGGC
** *
5499333 ATTAAGGTTTCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
1 ATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
* * *
5499398 TACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAATTGACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
5499463 GCATTTGAGATTTTGCAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
5499528 TCAAA
194 TCAAA
5499533 GGATCACGTC
Statistics
Matches: 3450, Mismatches: 329, Indels: 96
0.89 0.08 0.02
Matches are distributed among these distances:
891 1 0.00
892 72 0.02
893 418 0.12
894 4 0.00
900 64 0.02
901 434 0.13
902 322 0.09
903 2 0.00
905 250 0.07
906 247 0.07
907 1 0.00
908 89 0.03
909 451 0.13
910 273 0.08
912 3 0.00
913 2 0.00
914 3 0.00
916 8 0.00
918 108 0.03
919 231 0.07
920 455 0.13
921 12 0.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (902 bp):
ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCGAAAATCGTAAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCATAGTCCCGCCCGCCTCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAG
GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCGACGGC
Found at i:5500030 original size:26 final size:26
Alignment explanation
Indices: 5500000--5500059 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
5499990 GTTGACTTAG
5500000 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* * *
5500026 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGGACTTCATTCCCAGTCTAA
5500052 G-AT-CGGAC
1 GCATACGGAC
5500060 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:5500920 original size:26 final size:26
Alignment explanation
Indices: 5500884--5500936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5500874 GTTGAATTAC
*
5500884 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5500910 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5500936 G
1 G
5500937 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5501817 original size:26 final size:26
Alignment explanation
Indices: 5501781--5501833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5501771 GTTGAATTAC
*
5501781 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5501807 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5501833 G
1 G
5501834 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5502076 original size:897 final size:895
Alignment explanation
Indices: 5499531--5505852 Score: 8141
Period size: 894 Copynumber: 7.1 Consensus size: 895
5499521 ACCTTTTTCA
* * * * **
5499531 AAGGATCACGTCTACCAAGTATGGGGCCAAAAATCTTTTCGAAAAAATTTTAAAAAATCTTGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * *
5499596 CGTAAAAA-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCACGCGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * ** *
5499660 AGGCTTTAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAAAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
5499725 AGATGTGCCTAAACCCACATACCACCCTATCAATCCATGGCTTGCGCATCTCGTCTCTCTGGCCG
196 AGATGTGCCTAAACCCAC-TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
5499790 CGCGTAGTGCCCGTCCGCCCGCCTGCCCGCTCGTTCCATTGGTTGGCTTAGGCATACGGAGTTCA
260 -GCGCAGTGCCCGCCCGCCCG--T--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * *
5499855 TTCCCACTCTAAGATTGGACCTG-ATTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGG
320 TTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * **
5499919 GACCCGACCGATCCCTGACTTGCT-CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGTACATTCGT
384 G-CCCGATCGATCCC-GACTTG-TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
5499983 TTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
446 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * *
5500048 TTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
511 CTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* *
5500113 ATTTTTCTTCGCCGAGTCACCAT---C---G-----CCGGAGAACCTGACCGGTGGCATTAGGGT
576 ATTTTTCTTCGCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
5500167 TCTGACGATCGGGGGGTCGGGGGCGGTGTGCGCACATGATATGCGATGGGTGCTTGTACTTGGCC
641 TCCGGCGATCGGGGGGTC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
5500232 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAG
704 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
5500297 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAGATGGGGACACTTTTTTCAAATGGT
769 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
5500362 CACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
834 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * **
5500424 AAGGATCATGACTACCAAGATTGGGACCAAAACTCCTTCCGAAAAAATTTTAGGAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * *
5500489 TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCGCGTGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
5500554 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAAAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* *
5500619 AGATGTGCCTAAACCCACTTACCACCCTATCGGTCCACGGCTTGCGCATCCCGTCTCTCT-GCAA
196 AGATGTGCCTAAACCCAC-TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-C
* * * * *
5500683 AGTGTAGTGCCCGCCCG--C-T-CGCTTGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCC
259 GGCGCAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * * *
5500744 CAGTCTAAGATCAGACCAAACTGAGGATTATGGCAGCAGGATCAGCAGCATGTAGAGGGGGCCCG
324 CAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGCCCG
* * * * *
5500809 ATCGATCGCCGATTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGCGG
389 ATCGATC-CCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * *
5500874 GTTGAATTACGCATACGAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
453 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * *
5500939 CAAACTAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTC
518 CAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
5501004 TTCGCCGAGTCACCATCACCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCG
583 TTCGCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCG
* * * *
5501069 ATCGGGGTGGTTGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGATAGTTGGCCCTTATATT
648 ATCGGGG-GGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
5501134 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
712 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
5501199 GGTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGAGACTTTTTTCAAATGGTCACAAAAT
777 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
5501264 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
842 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *
5501318 AAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
5501383 CGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
5501448 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
*
5501513 AGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
196 AGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
5501578 ACGCAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGACTTCATTCCC
260 GCGCAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
5501643 AGTCTAAGATCAGATC-AATTAAGGGTTGCAGCAGTAGGATCGGTAGCATGTAGAGGGGGCCCGA
325 AGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGCCCGA
* * * * *
5501707 TCGATCGCCGATTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGCGGG
390 TCGATC-CCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
5501772 TTGAATTACGCATACGAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
454 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * *
5501837 AAACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCT
519 AGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
5501902 TCGCCGAGTCACCATCACCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGA
584 TCGCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
* *
5501967 TCGGGGTGGTTGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
649 TCGGGG-GGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5502032 GCCCCCTATCCCTCATCAAACATCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAG
713 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
5502097 GTTTGCTGCCTGTAGCCATTAAAGCGTCGGAAATGGGGACACTTTTTTCAAATGGTCACTAAATC
778 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
5502162 TTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTACATGCCAACAAAATTAG
843 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *** * *
5502215 AAGGATCATGTCTACCAAGTTTGGTTACAAAAC-CCGCTCCGAAAAAATTTTAAAAAATCTCGAA
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * *
5502279 TCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
65 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
5502344 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
5502409 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
195 AAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
5502474 GGCACAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
259 GGCGCAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * *
5502539 CAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCC
324 CAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG-CCC
* * ** * * * *
5502604 GGTCGATCCCTGTCTTCCGTATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTG
388 GATCGATCCC-GACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
5502669 GGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C--AG-
452 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
5502716 ---GACT-----GAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGTATTTTT
517 TCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** ** *
5502773 CTTCGCC-AGTGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGG
582 CTTCGCCGAGT-CACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
*
5502837 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
646 CGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
5502902 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCTTTAAAGAGCATTTCAGATTTTA
710 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5502967 CAGGTTTGCTGCCCGTAGCCATTAAAGTGTTTGAAATGGGGAGACTTTTTTCAAATGGTCACAAA
775 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
5503032 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
840 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* ** * * * *
5503088 AAGCATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTTAAAAATCCTGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * *
5503153 CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCCTGCCATGAAACTTCACGTGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
5503218 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGCCACACAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
*
5503283 AGATGTGCCT-AA---AC--CCA-CCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
196 AGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
5503341 CGTAGTGCCCACCCGCCCACCCG-CACGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCAT
261 CGCAGTG----CCCGCCCGCCCGTC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * *
5503405 TCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGGCAGCAGGATTGACAACACGCAGAGGGGGA
321 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG-
* * ** * * **
5503470 CCCGGTCGATCCCTGGCTTGCACATCCCGCCCTTCTGGTCGGCTGAGCGCCTACACGCTCGTTTC
385 CCCGATCGATCCC-GACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * ** * * *
5503535 GTGGGTTGACCTAGGCATACAGAGTTTGTTCCTAGTCTAAACATACGGAGTTCATTCCCAGTCTA
449 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * * * * * * *
5503600 AGATCGGATTAGACCAATGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGTATT
514 AGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * ** * *
5503665 TTTCTTCGTCGGGGCTCTATCACTGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGATTCC
579 TTTCTTCGCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * *
5503730 -GTGATCGGGGGGCCGAAGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
644 GGCGATCGGGGGGTCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
5503794 TAGTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAATT
708 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
5503859 TACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACA
773 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
5503924 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTTCATGCCGAAAAAAATAC
838 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * *
5503982 AAGGATCACGTCTACCAAGCTTGGGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
** *
5504047 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCACGTCA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
5504111 AGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATTA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * * *
5504176 AGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGCGCATGCCGTCTCTCTAGCTG
196 AGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
5504241 GCGTAGTGCCCGTCCGCCCGCACGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
260 GCGCAGTG--C--CCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * ** ** * *
5504306 TCCCAATCTAAGATTGGACCGGACCAAGGGTTGCGATAGCAAGATTGGCAGCACGCAGAGGGGGG
321 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGG
* * ** ** *
5504371 CTCGATCGATCCCCGGCTTGCCCATCATGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
385 CCCGATCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
5504436 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCT
449 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCT
* * *
5504500 AAGATCGGA-TCGGACCGAGGGTTAC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
513 AAGATCAGACT-AGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * * * *
5504563 ATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACAGACGACATTGGGGT
576 ATTTTTCTTCGCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* ** *
5504628 TCCGACGATCGGAGGGCCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGGTGCTGGTA
641 TCCGGCGATCGG-GGGGTC-GGGGGGTGTGCGCACATGATGTGCGA-------TGGGTGCTGGTA
* * * *
5504693 CTTGGCCCTTATGTTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAACAAC
697 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
5504758 ATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTC
762 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
5504823 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAA
827 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
5504888 A-AC
892 ATAC
* ** * *
5504891 AAGGATCATGTCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAT
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
5504956 GGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
66 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
5505021 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGTATTGGCAAACAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
5505086 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
196 AGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * * *
5505151 GCGTAATGCCTGCCTGCTCGCCCG-CGCGCTTGTTTCGTTGATTGGCTTAGGCGTACGGAGTTCA
260 GCG-CA-G--TGCCCGCCCGCCCGTC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
5505215 TTCCCAGTCTAAGAT-TGCATCGGACTGAGGGTTGCGGTAGCAGGATGGGCAGCATGCAAAGGGG
320 TTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGG
* * * * * * * * *
5505279 GGCCTGGTTGATCCCCGGCTTGTGCATCCTGCCCCTATGGCCAGCTGAGCGCCCGTACGCTTGTT
383 GGCCCGATCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
5505344 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCTCAGT
447 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGT
* * * * *
5505408 CTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGC
511 CTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
5505473 ATTTTTCTTCGTCG-GTGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGG
576 ATTTTTCTTCGCCGAGT-CACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
5505537 TTCTGGCGATCGGGGGGGTCGGGAGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAGTTGTC
640 TTCCGGCGATC-GGGGGGTCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
5505602 CCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAGCTCACACTCCCTTAAAGAGCATTTGA
703 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
5505667 GATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTTTCTAAAATGGGGAAACTTTTTTCAAATGG
768 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
5505732 TCACAAAATCTTGTACACATCGAGTTTTGAGCTGAATTTTTTTGTGCATGACAAAAAAAATAC
833 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* ** * *
5505795 AAGGATCACGTCTACCAGGTTTGAAGCCAAAACTCCTTCTGAAAAGATTTTAAAAAAT
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
5505853 TCACCCGTTC
Statistics
Matches: 4792, Mismatches: 535, Indels: 193
0.87 0.10 0.03
Matches are distributed among these distances:
865 45 0.01
866 3 0.00
868 2 0.00
869 192 0.04
870 2 0.00
871 2 0.00
872 5 0.00
873 506 0.11
874 6 0.00
878 3 0.00
882 3 0.00
883 1 0.00
884 189 0.04
885 88 0.02
886 3 0.00
887 1 0.00
888 1 0.00
890 4 0.00
891 1 0.00
893 161 0.03
894 958 0.20
895 142 0.03
896 7 0.00
897 844 0.18
898 94 0.02
899 87 0.02
900 4 0.00
901 353 0.07
902 15 0.00
903 214 0.04
904 53 0.01
909 119 0.02
910 677 0.14
911 3 0.00
912 2 0.00
914 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGCAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGCCCGAT
CGATCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GCCGAGTCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC
GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
Found at i:5503579 original size:26 final size:26
Alignment explanation
Indices: 5503550--5503600 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
5503540 TTGACCTAGG
** *
5503550 CATACAGAGTTTGTTCCTAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
*
5503576 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
5503601 GATCGGATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:5504486 original size:26 final size:26
Alignment explanation
Indices: 5504450--5504502 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5504440 GTTGACTTAG
*
5504450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5504476 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5504502 G
1 G
5504503 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5505389 original size:26 final size:26
Alignment explanation
Indices: 5505360--5505412 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5505350 GTTGACTTAG
*
5505360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5505386 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5505412 G
1 G
5505413 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5506931 original size:26 final size:26
Alignment explanation
Indices: 5506902--5506954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5506892 GTTAACTTCG
* * *
5506902 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5506928 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5506954 G
1 G
5506955 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5509876 original size:25 final size:25
Alignment explanation
Indices: 5509829--5509906 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
5509819 GTTCACTTAG
*
5509829 GCATACGGAGTCCATTTCCAGTCTAA
1 GCATACGGAGTTCA-TTCCAGTCTAA
5509855 GCATACGG-GTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
* *
5509880 GCATATGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
5509906 G
1 G
5509907 ATCAAAGTAG
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.09
25 18 0.39
26 24 0.52
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:5511976 original size:875 final size:872
Alignment explanation
Indices: 5509880--5512297 Score: 3475
Period size: 875 Copynumber: 2.8 Consensus size: 872
5509870 CCTAGTCTAA
* ** * ** * * *
5509880 GCATATGGAGTTCATTCAAAGTCTAAGATCAAAGTAGATCGAGGGTTGCAGCAACACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
5509945 CTAGGGCATGTGCTGGTGTCGGATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCC-GGGCA-CATCG-C-GACCATCACCGGAGA
* * *
5510010 ACCTGACCGGCGGTATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGT
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5510074 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
5510139 CCCCCTTGATGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5510204 GGGGCTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
5510269 GCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
387 GCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAA
* * * * *
5510334 TTTTAACAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAAAAAATGAGTCATCTT
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTT
*
5510398 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5510462 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTG
581 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5510527 CATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCTACCTGCTCGTTTCGTCGGTTGGAT
646 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGAT
** * * * *** * *
5510589 TAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGATAGGATTGAGGGTTGCTGCAACAGGATCA
711 TAGGCATACGAAGCCCATTCCTAGTCTAAGATCGAACAGAACAAAGGGTTACGGCAACAGGATCA
* * * ** * * * *
5510654 TCAGCACGAAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCTGCCTCTCTGGTCGGCTGAG
776 GCAGCACGAAGAGGGGGACCCGATCGAGCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAA
5510719 CGCCCGCACGCTCATTTCGTGGATTGACTTAG
841 CGCCCGCACGCTCATTTCGTGGATTGACTTAG
* * * * * * **
5510751 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAGCGATGGTTACGGCAGCACACACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * **
5510816 CTCAGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGG------GC-ACCATCACCGGAGAAGTT
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGCACATCGCGACCATCACCGGAGAACCT
* *
5510874 GATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGAT
131 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* *
5510939 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCACGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5511004 CCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
5511069 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
5511134 CACCAACAAAAATACAAGGATCACATCTACTAAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTT
390 CACCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTT
**
5511199 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
5511264 TGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
5511329 TATGCCGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCAAC
585 CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
5511394 CCATCTCTGTGGCCGGCGTAGTGCCCGCACGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAG
650 CCATCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCTACCCGCTCGTTTCGTCGGTTGGATTAG
* * * ** *
5511458 GCATACGGAGCCCATTCC-GGTCTAAGATCGAACCGAACAAAGGGTTACGGCAGTAGGATCGGCA
714 GCATACGAAGCCCATTCCTAGTCTAAGATCGAACAGAACAAAGGGTTACGGCAACAGGATCAGCA
*
5511522 GCACGAAGAGGGGGACCCGATCGAGCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGC
779 GCACGAAGAGGGGGACCCGATCGAGCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAACGC
* *
5511587 CCGCACGCTCGTTTCATTGG-TTGACTTAG
844 CCGCACGCTCATTTC-GTGGATTGACTTAG
*
5511616 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCATACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
**
5511681 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACTATCGTCGGACCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCC-GGGCAC-ATCG-C-GACCATCACCGGAGA
**
5511746 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCTTACATGATGTGC
127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * ** * * *
5511811 GAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTGTTATCAAACCTCAAGAACTCATA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5511876 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5511941 GGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5512006 GCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAA
387 GCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAA
** *
5512071 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGAT-GTCTT
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAG-TCGTCTT
* *
5512135 GCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5512200 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
581 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
5512265 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
646 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
5512298 CGCTCGTTTC
Statistics
Matches: 1373, Mismatches: 153, Indels: 39
0.88 0.10 0.02
Matches are distributed among these distances:
860 39 0.03
861 8 0.01
862 379 0.28
863 86 0.06
865 199 0.14
866 46 0.03
867 8 0.01
870 3 0.00
871 78 0.06
873 1 0.00
874 2 0.00
875 474 0.35
876 50 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGCACATCGCGACCATCACCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAC
ACCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CATCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGATTAGGC
ATACGAAGCCCATTCCTAGTCTAAGATCGAACAGAACAAAGGGTTACGGCAACAGGATCAGCAGC
ACGAAGAGGGGGACCCGATCGAGCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCC
GCACGCTCATTTCGTGGATTGACTTAG
Found at i:5512911 original size:707 final size:706
Alignment explanation
Indices: 5511585--5513007 Score: 2174
Period size: 707 Copynumber: 2.0 Consensus size: 706
5511575 CCGGCTGAAC
* *
5511585 GCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
1 GCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAAC
* * *
5511650 CATACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGC
66 CAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGC
* * * * * * *
5511715 CAGGGCACTATCGTCGGACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
131 CAGGGCACCATCGTCGGACCATCGCCGAAGAACCTGACCGACGGCATCGAGGTTCCGACAATCGG
**
5511780 GGGGGCCGGGGGGTGTGCTTACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCC
196 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
5511845 CCTATCTGTTATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
261 CCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTT
* * *
5511910 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGT
326 GCTACCACTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATCGTCACAAAATCTTGT
*
5511975 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACC
391 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACATCTACC
** **
5512040 AAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
456 AAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
* *
5512105 AATCGTGAAAAATAGAAAACGAGATGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCAT
521 AATAGTGAAAAATAGAAAACGAGATGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
5512170 TGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
586 TGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * *
5512235 ACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT
651 ACCTACCACCCTATCGATCCACGGCTTGCGCAACCCATCTCTCTGGCCGACGTAGT
* * * * *
5512291 GCCCGCCCGCTCGTTTCATCGGTTCG-CTTAGGCATAGGGAGCTCATTCTCAGTCTCAGA-CTGG
1 GCCCGCACGCTCGTTTCATCGGTT-GACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATC-GA
* * *
5512354 ACCGGACTGAGGGTTGCAGCAGCACATACTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTC
64 ACCAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTC
* * * * *
5512419 GTC-GAGGCACCATTGTTC-GAGCATCGCCGAAGAACCTGACCGACGGCATCGAGGTTTCGGCAA
129 GCCAG-GGCACCATCG-TCGGACCATCGCCGAAGAACCTGACCGACGGCATCGAGGTTCCGACAA
5512482 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATT
192 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATT
* *
5512547 GGGCCCCTAT-TCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
256 GGCCCCCTATCT-CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
5512611 ACGTTTGCTACCACTAGCCATTAAAGTGTTTTAAATGGGGACACATTTTTCAAATGGTCACAAAA
320 ACGTTTGCTACCACTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATCGTCACAAAA
* * *
5512676 TCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACG
385 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACA
* *
5512741 TCTACCAAGTTTAGGGCTAGAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGT
450 TCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGT
5512806 TTCAAAAATAGTGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
515 TTCAAAAATAGTGAAAAATAGAAAACGAGAT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
5512870 GGACCATTGTATGAATTTACAAACCATAAAAATGACATTGGCATGTAGAAATATTAAGATGTGCC
579 GGACCATTGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
5512935 TAAACCCAGCTATCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGATGTAGT
644 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCATCTCTCTGGCCGACGTAGT
5512998 GCCCGCACGC
1 GCCCGCACGC
5513008 CCACCCACCC
Statistics
Matches: 646, Mismatches: 64, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
705 2 0.00
706 170 0.26
707 474 0.73
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
GCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAAC
CAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGC
CAGGGCACCATCGTCGGACCATCGCCGAAGAACCTGACCGACGGCATCGAGGTTCCGACAATCGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTT
GCTACCACTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATCGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACATCTACC
AAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
AATAGTGAAAAATAGAAAACGAGATGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCAACCCATCTCTCTGGCCGACGTAGT
Found at i:5514117 original size:26 final size:26
Alignment explanation
Indices: 5514065--5514117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5514055 GTTGACTTAG
* * *
5514065 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5514091 GCATACAGAGTTCATTCGCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5514117 G
1 G
5514118 ATCGTACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5514498 original size:892 final size:886
Alignment explanation
Indices: 5513200--5515671 Score: 3629
Period size: 892 Copynumber: 2.8 Consensus size: 886
5513190 GTTGAGTTAG
* *
5513200 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
5513265 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
*
5513330 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5513395 GTTGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5513460 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
5513525 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
* * *
5513590 GCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAA
* * * * *
5513655 TTTTAAAAAATCTCGAATCGTAAAAAATTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
456 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5513720 CCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
5513785 TGGCACACATAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5513850 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCTCGTTT-TGTCGGTTGCCTTAGACATACGG
651 ATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCTCGTTTGT-TCGGTTGCCTTAGACATACGG
* * * * * * *
5513914 AGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGCAGCAAGATCGGCAGCATGTAG
715 AGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTACGGCAGCAAGATCGACAGCACGCAG
* * *
5513979 AGGGGGACCCGACCGATC-CCCGGATTGCGCATCCCACCCCTCTGGTCGACTGAGCG-CCCGCAC
780 AGGGGGACCCAACCGA-CACCCGGATTGCGCAT-----CCCTCTGGCCGACTGAGCGCCCCGCAA
* * *
5514042 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
839 GCACGTTTCGTGGGTTGACTTAGGCATAC-GACTTCATTCCCAGTCTAA
* * * * *
5514091 GCATACAGAGTTCATTCGCAATCTAAGATCGTACCGGACCGATGGTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * *
5514156 CTTGGGCATGCGCTGGTGATGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * * * *
5514221 ACCTAACCGGCGGCATTAGGGTTCCGACGGTCGGGGGGGCCGGCGGGGTGCGCGCACATGATGTG
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
*
5514286 CGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5514351 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5514416 GGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
*
5514481 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAA
* * * * *
5514546 ATTTTAAAAAATCCCGAACCACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
5514611 GCCATGAAATTTCACGTGAAGGCTTAAGCGCCCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5514676 TTGGCACACAGAAATATGAAGATGTGCCGAAACACACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
5514741 CATCCCATTTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTGTTCGGTTGGC
650 CATCCCATCTCTCTGGCCGACGTAGT------------GCCCGCCTGCTCGTTTGTTCGGTTGCC
* * * * *
5514806 TTAGGCCTACGGAGTTCATTCCCAGTCTAAGATCAGAACTGATCGAGGGTTACGGCAGTAGGATC
703 TTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTACGGCAGCAAGATC
* * * * *
5514871 GACAGCACGCAGAGTGGGACCCAATCGACACCCGGCTTGTGCATCCCTCTGGCCGGCTGAGCGCC
768 GACAGCACGCAGAGGGGGACCCAACCGACACCCGGATTGCGCATCCCTCTGGCCGACTGAGCGCC
* *
5514936 CCGTAAGCACGTTTCGTGGGTTGACTTCGGCATACGACTTCATTCCCAGTCTAA
833 CCGCAAGCACGTTTCGTGGGTTGACTTAGGCATACGACTTCATTCCCAGTCTAA
* * * **
5514990 GCATACAGAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
5515055 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * *
5515120 ACCTGACCGCCGGTATTGGGGTTCTGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * **
5515185 GATGGGTTCTTGTACTTGGCCCTTATATTGGCCCCCCGTCCCTCATCAAACCGT-GAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
*
5515249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
5515314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
* * * * *
5515379 TGCATGCCAACAAAAATAGAAGGATCGCGTCTACCATGTTTGGGGCCAAAATTACTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAA
5515444 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
5515509 GCCATTAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
5515574 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
5515639 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
650 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
5515672 CGCCCGCCCG
Statistics
Matches: 1410, Mismatches: 154, Indels: 39
0.88 0.10 0.02
Matches are distributed among these distances:
886 7 0.00
891 150 0.11
892 465 0.33
898 460 0.33
899 180 0.13
900 32 0.02
903 1 0.00
904 114 0.08
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (886 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCTCGTTTGTTCGGTTGCCTTAGACATACGGA
GTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGA
GGGGGACCCAACCGACACCCGGATTGCGCATCCCTCTGGCCGACTGAGCGCCCCGCAAGCACGTT
TCGTGGGTTGACTTAGGCATACGACTTCATTCCCAGTCTAA
Found at i:5515414 original size:898 final size:897
Alignment explanation
Indices: 5513200--5515763 Score: 3574
Period size: 898 Copynumber: 2.9 Consensus size: 897
5513190 GTTGAGTTAG
* ** * *
5513200 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
5513265 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
5513330 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5513395 GTTGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5513460 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5513525 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5513590 GCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
5513655 TTTTAAAAAATCTCGAATCGTAAAAAATTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
5513720 CCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5513785 TGGCACACATAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5513850 ATCCCGTCTCTCTGGCCGGCGTAGT------------GCCCGCCTGCTCGTTTTGTCGGTTGCCT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCG-TTTGTCGGTTGGCT
* * * * *
5513903 TAGACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGCAGCAAGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
5513968 GCAGCATGTAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCCCACCCCTCTGGTCGACTGAG
780 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT----CCCCTCTGGCCGGCTGAG
*
5514033 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * * * * * *
5514091 GCATACAGAGTTCATTCGCAATCTAAGATCGTACCGGACCGATGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * **
5514156 CTTGGGCATGCGCTGGTGATGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * *
5514221 ACCTAACCGGCGGCATTAGGGTTCCGACGGTCGGGGGGGCCGGCGGGGTGCGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
*
5514286 CGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5514351 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5514416 GGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5514481 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * *
5514546 ATTTTAAAAAATCCCGAACCACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
5514611 GCCATGAAATTTCACGTGAAGGCTTAAGCGCCCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5514676 TTGGCACACAGAAATATGAAGATGTGCCGAAACACACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5514741 CATCCCATTTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTGTTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTG-TCGGTTGGC
* * * *
5514806 TTAGGCCTACGGAGTTCATTCCCAGTCTAAGATCAGAACTGATCGAGGGTTACGGCAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTGCGGCAGCAGGATC
* * * *
5514871 GACAGCACGCAGAGTGGGACCCAATCGA-CACCCGGCTTGTGCAT-CCCTCTGGCCGGCTGAGCG
779 GACAGCACGCAGAGGGGGACCCGACCGATC-CCCGGCTTGCGCATCCCCTCTGGCCGGCTGAGCG
* * * * *
5514934 CCCCGTAAGCACGTTTCGTGGGTTGACTTCGGCATACGACTTCATTCCCAGTCTAA
843 -CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
* * * *
5514990 GCATACAGAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
5515055 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
5515120 ACCTGACCGCCGGTATTGGGGTTCTGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * **
5515185 GATGGGTTCTTGTACTTGGCCCTTATATTGGCCCCCCGTCCCTCATCAAACCGT-GAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
*
5515249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5515314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
5515379 TGCATGCCAACAAAAATAGAAGGATCGCGTCTACCATGTTTGGGGCCAAAATTACTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5515444 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
5515509 GCCATTAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5515574 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
5515639 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTAGTGGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTT-GTCGGTTGGC
* * * * *
5515704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCA
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTGCGGCAGCA
5515764 CATGCAGGGC
Statistics
Matches: 1489, Mismatches: 166, Indels: 29
0.88 0.10 0.02
Matches are distributed among these distances:
891 150 0.10
892 465 0.31
898 545 0.37
899 181 0.12
900 32 0.02
903 5 0.00
904 111 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:5516742 original size:438 final size:438
Alignment explanation
Indices: 5515919--5516800 Score: 1372
Period size: 438 Copynumber: 2.0 Consensus size: 438
5515909 GGCCCTCATA
* * *
5515919 TTGGCCCCCTATCCGTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
1 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
* *
5515984 CAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAA
66 CAAGTTTGCGGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAA
* * *
5516049 ATCTTGTACACTTTGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
131 ATCTTCTACACTTCGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
* *
5516114 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGT
196 TCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGT
** * * *
5516179 TTTGAAAATCGTGAAAAATAGAAAACGAGTTGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGG
261 TTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGA
** * * *
5516244 GACCATTGTATGAATTTGTAAGCCATAAAAATGGCTTTGGCATGCAAAAATATGAAGATGTACCT
326 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTACCA
* *
5516309 AAACCCACCTACTC-CACTATCGATCCACGGCTTGCATATCCCGTCTCT
391 AAACCCACCTAC-CACACTATCGATCCACGGCTTGCACATCCCATCTCT
* *
5516357 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
* * * *
5516422 CAAGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAAGTTTGCGGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAA
*
5516487 ATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
131 ATCTTCTACACTTCGAGTTTTTAGCT-AAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** *
5516552 ATCTACCAACTTTGGGGTGAAAACTCCTTCCGAAAGAATTTT-AAAAATCCCGAACCCCAAAAAG
195 ATCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAG
5516616 TTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
260 TTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
5516681 AGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCAGGCAGAAATATTAAGATGTGCC
325 AGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTACC
* * *
5516746 AAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
390 AAAACCCACCTACCACACTATCGATCCACGGCTTGCACATCCCATCTCT
*
5516795 CTGGCC
1 TTGGCC
5516801 AACATAGTGC
Statistics
Matches: 402, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
437 1 0.00
438 328 0.82
439 73 0.18
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (438 bp):
TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
CAAGTTTGCGGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAA
ATCTTCTACACTTCGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
TCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGT
TTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGA
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTACCA
AAACCCACCTACCACACTATCGATCCACGGCTTGCACATCCCATCTCT
Found at i:5517945 original size:26 final size:26
Alignment explanation
Indices: 5517908--5517959 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5517898 GTTGACTTAG
*
5517908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5517934 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5517960 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5518097 original size:901 final size:897
Alignment explanation
Indices: 5516357--5524077 Score: 10134
Period size: 901 Copynumber: 8.6 Consensus size: 897
5516347 TCCCGTCTCT
* *
5516357 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5516422 CAAGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
5516487 ATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * ** * **
5516552 ATCTACCAACTTTGGGGTGAAAACTCCTTCCGAAAGAATTTT-AAAAATCCCGAACCCCAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
5516616 TTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
5516681 AGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCAGGCAGAAATATTAAGATGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * *
5516746 AAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACATAGTGC
391 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
5516811 ACGCCCGCCCGCCTGCTCGTTTCATCGGTTTGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
456 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGA
* * * *
5516876 TCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCTGGCCGATCCC
520 TCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCC
* * * *
5516941 C-ACCTTGCGCATCCTGCCCCTC-GACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
585 CGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * * * * *
5517004 AGGCTTATGGAGTTCATTTCCAGTCTAAGCATACGGATTTCATTCCCAGTCTGAGATCGGACTAG
649 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* **
5517069 ACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
714 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * *
5517134 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGG
779 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTTCGGCGATC-GGGG
*
5517199 GGGCTGGGGGTAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
842 GGGCT-GGGG--GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
5517258 TTGG-CCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
5517322 CAGGTTTGCTGCCAATAGCCATTAAATTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCATAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5517387 ATCTTCTACACTTTGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * * *
5517452 GTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAGTTTTAAAAAATCCCAAACCGTAAAAAT
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
5517517 TTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
5517582 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATGTGAAGATGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
5517647 TAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTGC
391 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
5517712 CCGCCTGCCCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTAATTCTCAGTCTAAGA
456 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGA
* * * *
5517777 TCGGACCAGACTGAGGGTTGCAGCAGCATGATCGACAGCACGCAGAGGGGCACCCGATCGATCCC
520 TCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCC
** * * * *
5517842 CGACTTGCGTGTCTCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
585 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* * * *
5517907 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCAGACCGGA
650 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * *
5517972 TCGAGGGTTG-GGCAGCTCATGCTGGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCACCGGG
715 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
*
5518036 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGAGTTTCCGGCGATC-GGGGG
780 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGTTT-CGGCGATCGGGGGG
* * * *
5518100 GCCGGGGGGCGTGCGCACATGATGTGCGTTAGGTGCTGGTACTTGGCCCTTATA
844 GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
5518154 TTGGCCCCCTATCCCTCATCAAACATTGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
5518219 CAGGTTTGCTACCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5518284 ATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * *
5518349 GTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAA
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAA
** *
5518414 GTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
5518479 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * *
5518544 CTAAACCAACCTACCACCCTATCGATCCCCGACTTGCGCATCCCGTCTCTCTGGTCGATGTAGTG
390 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * *
5518609 CCCGCCCACCCGCCCGCACGCTCGTTTCGTCGGTTTGCTTAGGCATATGGAGTTCATTCCTAGTC
455 CCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTC
* * ** * * * * * ** *
5518674 TAAGATTGGACCGGACCAAGGGTTGCGACAGTAGGATCGACAGCATGTAGAGGAGGACCCAATCA
515 TAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCG
* * *
5518739 ATCCCCGACTTGCGCATCCCG-CCCTCTAGCCGGCTGAGCACCCGCAAGCTCATTTCATGGGTTG
580 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * *
5518803 ACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATT-CCAATCTAAGATTGGA
645 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * ** * * *
5518867 CTAGACCGAGGGTTGTGGCAGCACATGCCAGGCTCGGGCATGTGCTGGAGCCGTATTTTTCTTCG
710 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* ** * * * * * * *
5518932 TCAAGGCACCATCATCAGAGCATCGTCGGAGAACCTGACCGGC-AGATTGGGGTTCCGACGATCG
775 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTTCGGCGATCG
* *
5518996 GGGGGG-TCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
839 GGGGGGCT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
5519055 TTGGCCCCCTATCCCTGATCAAACCTCGAGAACTCACACCCTCTTATAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
5519120 CAGGTTTGCTGCCAATAGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTGAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
5519185 ATCTTCTACACTTTGAGTTTTTAACTGAAATTTTTT-TGCATGCCAACAAAAATATAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-
* * * * *
5519249 T-TCTACCAAGTTT-GGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAG
195 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * * * * *
5519312 GTTTCCAAAATCGTGAAAAATAGAAAATGAGTCATCCTACCATGGAACTTCAGGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
5519377 GGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTCGCATGCAGAAA-AGTGAAGATGTA
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA-TGAAGATGTG
*
5519441 CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-T
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
** * * *
5519505 ---TACCCGCCCGCCTGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
454 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAA
* * * * * *
5519567 GATCGGACCAGATTGAGGGTTGCGACAGCAGGA-CCAGCAGCACACAGAGGTGGACCC-GACTGA
518 GATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTC-GA
* * ** * * * * * *
5519630 TACTCGTTTTGCACATCCCGCCCCTCTAGCTGGCTGAGTGCTCGCACGCTCATTTCGTGGGTTGA
581 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
5519695 CTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
646 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * ** * **
5519759 CGGATTGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGC
711 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * * * * * * * * * * * *
5519824 TGGGGCACCATTGCCGAAGCATCTCCAGAGAACCTAACCGGCGGCATTGGGGTTCCAGCGATTGC
776 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTTCGGCGATCGG
**
5519889 GGGGGC-CAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
840 GGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
5519946 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
5520011 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
5520076 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAAA-ACAAGGATAA
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCA
* * **
5520140 TGTCTACCAAGTTT-GCGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACAATAAAAA
195 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** *
5520204 GTTAAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
5520269 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGCAGAAATATGAAGATGCGC
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * **
5520334 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTA
390 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-
* *
5520399 CCCGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
454 ---GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTC
* * ** * * * * * *
5520464 TCAA-ATCGAACCAGACCGAGGGTTATGGTAGCAAGATCAACAGCATGCAGAGGGGGACCTGGCC
515 T-AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTC
* * * * ** * * *
5520528 GATCCCTGGCTTTCGCGTCCTACCCCTCTGGCCGGTTGAGTGCCCGCACAG-TCATTTCGTGGGT
579 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCATTTCATGGGT
** *
5520592 TGACTTAGGCATACGGAGTTCATTCTAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
643 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
5520657 GATCAGACCAAGGGTTACGGTAGCACTTGCAGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
708 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
5520722 CACCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTAACTTG-CGACATT-GGTGTTCTGGCG
773 CACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-CGACGACATTGGGT-TTC-GGCG
* * * * * *
5520785 ATCGGGGGGCCGGGGGGGTGTGCGAACATGATGTGTGATGGGTGCTGATACTTGGCCCATATA
835 ATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* ** *
5520848 ATATCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
5520913 CA-G---GCAGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
5520974 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAATAATACAAGGATCA
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCA
* * ** * * *
5521038 CGCCTACCAAGTTTTTGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAGCCGTAAAAA
195 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
5521103 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
**
5521168 GGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACTTAGAAATATGAAGATGTGC
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * * *
5521232 CTAAACGCACCTACCACCCTATCGATCCACGACTTGCACATCTCGTCTCTTTGGCCGGCGTAGT-
390 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* *
5521296 ---GCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
455 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAG
* * * * *
5521358 AT-----CAGACTGA-GGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTGGCCGATCC
519 ATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCC
* * *
5521417 CCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
584 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
**
5521482 AGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
649 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* **
5521546 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
714 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * *
5521611 GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTAAGGTTTCAGCGATCGGAGG
779 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTTCGGCGATCGG-GG
* * *
5521676 GGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTAGTACTTGGCCCTTATA
842 GGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
5521732 CTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
5521797 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTTACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5521862 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGAACAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
** * * *
5521927 GTCTACCAAGTTTGGGGTGAAAACGCCTTCCGAAAAAATTTTAAAAAATCCAGAACCATAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
5521992 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTCCCATGAGACTTCACGTGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
5522057 GGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGGC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* **
5522122 TAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGTGTAGTGC
391 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
5522187 CTGCCCGCCCGCCCTCTTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCATAGTCC
456 CCGCCCGCCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCT
* ** * * * *
5522252 AAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCAACAGCATGCAGAGGGGGACCCGGTTGA
516 AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGA
* * * ** * *
5522317 TCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTACCCGCACGTTCGTTTCATGGGTTGA
581 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
* * * * *
5522382 CTTAGGCATACAGAGTTCATTCCCATTCTAAGAATACGGAGTTCTTTCCCAGTCCAAGATCGGAG
646 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-
* * * * * *
5522447 CC---TCAAGTGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGCTGTCGCATTTTTCTTCA
710 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * * *
5522509 CCGAGGCACCATCGTCGGACCATCGCTGAAGAACCTGA-C-AGGTAGCATTAGGGTTTCGGTGAT
775 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG-A-CATT-GGGTTTCGGCGAT
* * * *
5522572 CGTGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATA
837 CGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
5522633 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCC-TAATGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5522697 TAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
5522762 ATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * * *
5522827 GTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAGAAATCCCGAACCGCAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
5522892 TTTCAAAAATCATGAAAAATAGAGAACTAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ** *
5522957 GCACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACTTAGAAATATGAAGGTGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
** * * *
5523021 TAAAGGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGCGC
391 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-
* *
5523086 CCACTCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
455 -C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCT
* * * *
5523151 AAGATCGGA-C--A--GA-GGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTGGTCGA
516 AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGA
* * * *
5523210 TCCCC-AGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAGGCTCATTTCATGTGTTG
581 TCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * * * *
5523274 ACTTAGGCATA-TGAGTTCATTCCCAGTCTAAGCATACAGACTTCATTCGCAGTCTAAGATCAGA
645 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
5523338 CCAGTCTGAGGGTTGCGACATCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
710 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * *
5523403 TCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCG
775 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTTCGGCGATCG
* * * * *
5523468 AGGGGGCCTGGGGGGTGTGCGCACATGATGTGTGATGGATTCTAGTACTTGGCCCTTATA
839 -GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
5523528 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTT--GATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5523591 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTCCAAATGGTCAGAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5523656 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
5523721 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** * *
5523786 TTTTGAACATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
5523851 GGACCATTGTATGAATTTACAAGCCATAAAAAATGGCAATGGCACGTAGAAATATGAAGATGTGC
326 GGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * * *
5523916 CTAAACCCAACTACGACCATATCGATCCATGGCTTGCG-ATCCCGTTTCTCTGGCC-AGCTTAGT
390 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT
* * * * **
5523979 GCCCGCTCGCCCATCCACTCGTTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
454 GCCCGCCCGCCC--GC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGT
* * *
5524044 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
514 CTAAGATCGGACCAGACTGAGGGTTGCGGCAGCA
5524078 CATGCTAGGC
Statistics
Matches: 5969, Mismatches: 744, Indels: 214
0.86 0.11 0.03
Matches are distributed among these distances:
882 1 0.00
883 155 0.03
884 220 0.04
885 11 0.00
888 251 0.04
889 99 0.02
890 201 0.03
891 357 0.06
892 311 0.05
893 122 0.02
894 377 0.06
895 164 0.03
896 129 0.02
897 283 0.05
898 576 0.10
899 318 0.05
900 730 0.12
901 1061 0.18
902 436 0.07
903 118 0.02
904 48 0.01
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (897 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGAT
CGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCC
GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGTTTCGGCGATCGGGGGGGC
TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
Found at i:5519738 original size:26 final size:25
Alignment explanation
Indices: 5519700--5519751 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
5519690 GTTGACTTAG
5519700 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
5519725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
5519751 G
1 G
5519752 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:5520225 original size:26 final size:26
Alignment explanation
Indices: 5520173--5520230 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
5520163 CTCCTTCCGA
* * *
5520173 AAAAATTTTAAAAAATCTCGAACAAT
1 AAAAAGTTAAAAAAATCTCGAAAAAT
5520199 AAAAAGTTAAAAAAATCAT-GAAAAAT
1 AAAAAGTTAAAAAAATC-TCGAAAAAT
5520225 AGAAAA
1 A-AAAA
5520231 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTAAAAAAATCTCGAAAAAT
Found at i:5520636 original size:26 final size:26
Alignment explanation
Indices: 5520600--5520652 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5520590 GTTGACTTAG
*
5520600 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5520626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5520652 G
1 G
5520653 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5521513 original size:25 final size:26
Alignment explanation
Indices: 5521484--5521535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5521474 GTTGACTTAG
5521484 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5521509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5521535 G
1 G
5521536 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5522440 original size:26 final size:26
Alignment explanation
Indices: 5522389--5522440 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5522379 TGACTTAGGC
* *
5522389 ATACAGAGTTCATTCCCATTCTAAGA
1 ATACAGAGTTCATTCCCAGTCCAAGA
* *
5522415 ATACGGAGTTCTTTCCCAGTCCAAGA
1 ATACAGAGTTCATTCCCAGTCCAAGA
5522441 TCGGAGCCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCCAAGA
Found at i:5523318 original size:26 final size:24
Alignment explanation
Indices: 5523289--5523338 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
5523279 GGCATATGAG
5523289 TTCATTCCCAGTCTAAGCATACAGAC
1 TTCATTCCCAGTCTAAG-AT-CAGAC
*
5523315 TTCATTCGCAGTCTAAGATCAGAC
1 TTCATTCCCAGTCTAAGATCAGAC
5523339 CAGTCTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (24 bp):
TTCATTCCCAGTCTAAGATCAGAC
Found at i:5524145 original size:11 final size:11
Alignment explanation
Indices: 5524129--5524161 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5524119 ACTGGGGCAC
5524129 CATCGCCGGAG
1 CATCGCCGGAG
5524140 CATCGCCGGAG
1 CATCGCCGGAG
*
5524151 CATCACCGGAG
1 CATCGCCGGAG
5524162 AACCTGACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:5524607 original size:731 final size:705
Alignment explanation
Indices: 5523305--5524796 Score: 2135
Period size: 731 Copynumber: 2.1 Consensus size: 705
5523295 CCCAGTCTAA
* * * * * * * *
5523305 GCATACAGACTTCATTCGCAGTCTAAGATCAGACCAGTCTGAGGGTTGCGACATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* *
5523370 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGAGCATATGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
5523435 ACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCTGGGGGGTGTGCGCACATGATGTG
131 ACCAGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5523500 TGATGGATTCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGATGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5523565 ACTCCCTTAAAGAGCATTTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
261 ACCCCCTTAAAGAGCATTTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* *
5523630 GGACACTTTTTCCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
326 GGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTG
5523695 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * *
5523760 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAACATCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
5523825 CACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCAA
521 CACGAAACTTCACGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAGCCAT-AAAAATGGCAA
* * * *
5523890 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACGACCATATCGATCCATGGCTTGCG-
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCACATCGATCCAAGGCTTGCGC
* * *
5523954 ATCCCGTTTCTCTGGCCAGCTTAGTGCCCGCTCGCCCATCCACTCGTTCATTTAATCGGTTGGCT
650 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGC-C-CCC-T-C-CT--TTC--GT--T-GGTTGGCT
5524019 TAG
703 TAG
*
5524022 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* *
5524087 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCA-CTGGGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCGAGCATATGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCACCGGAG
* *
5524151 CATCACCGGAGAACCTGACCAGCCGCATTGGGGTTTCGGCGATCG-GGGGCGTCGGGGGGGGTGT
130 -A--ACC--AG-ACC-GA-C-G--GCATTGGGGTTTCGACGATCGAGGGG-G-CCGGGGGGGTGT
* * *
5524215 GTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
182 GCGCACATGATGTGCGATGGATGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
5524280 CCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
247 CCTCGAGAACTCACACCCCCTTAAAGAGCATTT--GATTTTACAGGTTTGCTGCCAGTAGCAATT
* *
5524345 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTA
310 AAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
* * * * *
5524410 GCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTAGCAAGTTTGGGGTCAAAA
375 GCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
5524475 CTCCTTCCGAAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGA
440 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
5524540 AAACGAGTCGTGTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAG
505 AAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAG
* * * *
5524605 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCCATCG
570 CCATAAAAATGGCAATGGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCACATCG
* * *
5524670 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTTGGTTG
635 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCTCCTTTCGTTGGTTG
5524735 GCTTAG
700 GCTTAG
* *
5524741 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
5524797 GGATTGGCAG
Statistics
Matches: 694, Mismatches: 64, Indels: 32
0.88 0.08 0.04
Matches are distributed among these distances:
716 1 0.00
717 114 0.16
718 1 0.00
719 64 0.09
720 4 0.01
722 2 0.00
723 3 0.00
724 5 0.01
725 1 0.00
726 2 0.00
727 5 0.01
728 22 0.03
729 102 0.15
730 68 0.10
731 300 0.43
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGAGCATATGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCAGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGATGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
GGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CACGAAACTTCACGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAGCCATAAAAATGGCAAT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCACATCGATCCAAGGCTTGCGCA
TCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCCCTCCTTTCGTTGGTTGGCTTAG
Found at i:5524949 original size:26 final size:26
Alignment explanation
Indices: 5524897--5524950 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
5524887 TGGGTTGACT
*
5524897 TAGGCATACGGAGTTCATTCCCGGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
5524923 TAGGCATACGGAGTTCATTCTCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
5524949 TA
1 TA
5524951 AGATCGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:5525836 original size:26 final size:26
Alignment explanation
Indices: 5525793--5525845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5525783 GTTGACTTAG
*
5525793 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
*
5525819 GCATACGAAGCTCTTTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
5525845 G
1 G
5525846 ATTGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:5525876 original size:893 final size:892
Alignment explanation
Indices: 5524022--5529170 Score: 7197
Period size: 891 Copynumber: 5.7 Consensus size: 892
5524012 GTTGGCTTAG
* *
5524022 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5524087 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGGAGC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAG-
* * * *
5524152 ATCACCGGAGAACCTGACCAGCCGCATTGGGGTTTCGGCGATCGGGGGCGTCGGGGGGGGTGTGT
130 A--ACC--TG-ACC-GA-C-G--GCATTGGGGTTCCGGCGATCGGGGG-GGCGGGGGGGGTGTGC
5524217 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
184 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
5524282 TCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAA
249 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
5524347 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGC
314 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
5524412 TGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTAGCAAGTTTGGGGTCAAAACT
379 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * * **
5524477 CCTTCCGAAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAA
444 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
5524542 ACGAGTCGTGTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAGCC
509 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
5524607 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCCATCGAT
574 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
5524672 CCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTTGGTTGGC
639 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGC
* * *
5524737 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATT
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATC
** * * *
5524802 GGCAGCACACAGGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCT-GCTCGGCTG
769 GGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTG
* * * * *
5524866 AGTGCCCGCACG-TTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAG
833 AGCGCCCGCACGCTT-GTTTTAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5524926 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5524991 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
5525056 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGTGGGGGTCGGGGGGGGTGTGCGCCCATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGGCGGGGGGGGTGTGCGCACATGATGT
* *
5525121 GCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCTAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * * *
5525186 CACTGCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5525251 TGAGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5525316 GTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * *
5525381 AATTTTAAAAAATTTTGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAGAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
5525446 TGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATTGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5525511 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
585 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5525576 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACA
650 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * *
5525641 GAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTGCAGTAGCAGGATCGGTAGCACGTA
715 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * * * *
5525706 GAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCGCTGGTCGACTGAGCACCCGCACG
780 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
5525771 CTTGTTTTAGGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
845 CTTGTTTTAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
5525819 GCATACGAAGCTCTTTCCCAGTCTAAGATTGGATGGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5525884 CTTTG-CCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAG
66 C-TCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAG
*** * *
5525948 AACCTGATAAACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGGTGTGCGCACATGATGT
5526013 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5526078 CACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5526143 TGGGGACATTTTTTTCAAATGGACACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5526208 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * *
5526273 AATTTAAAAAAATCTCGAACCG-TAAAAGTTTCAAAAATCGTGAAAAATAGAGAACAAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* ** *
5526337 TGCCGTGAAACTTCACGTGAAGGCTTAAGATACCATTGTATGAATTTACAAGCCATAAAAATTGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
5526402 ATTGGCTTCTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTGT
585 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5526467 GCATCCCGTGTCTCTGGCCGGTGTAGTGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACG
650 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * *
5526532 GAGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGAGTTGCGGCAGCAGGATCGGTAGCACATA
715 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * *
5526597 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGTACT
780 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
5526662 CTCGTTTTGGGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
845 CTTGTTTTAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * *
5526710 ACATACGGAGCTCATTCCTAGTCTAAGATTGGATGGGACCAAGGCTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5526775 C-CTG-GCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGACACCATCATCGGAGCTTCGCCGGA
66 CTC-GAG-CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGA
* * * *
5526838 GAACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGGTGTGCGCACATGATG
* * *
5526903 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTTATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * *
5526968 ACACCGGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTGAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
5527033 ATGGGGACATTTTTTTCAAATGGACACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTGTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5527098 TATGCATGCCAACAAAAACACAAGGATCACGTCTGCCAGGTTTGGGGCCAAAACTCCTTTC-AAA
389 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** * *
5527162 ATAA-TTTAAAACAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTG
454 A-AATTTTAAAA-AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
5527226 TCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAGAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
5527291 GGCATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCCATCCACGGCT
582 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
5527356 TGCGCATCCTGTCTCTCTCGCCGGCGTAGTGCCCGCCCGTCCGCTTGTTTCGTCGGTTGGCTTAG
647 TGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG--C--CCGCTCGTTTCATCGGTTGGCTTAG
* * *
5527421 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGGCA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCA
* *
5527486 GCACGTAGAGGGGGA-CCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
773 GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
5527550 CCGCACGCTCG-TTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CCGCACGCTTGTTTTAG-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5527605 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
5527670 CTC-AGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAG
* * ** * * * * * *
5527734 AACCTGACTGGCGGTTTTAGGGTTCTGACGATCGGGGGGGC-CGAGGGGTGTGAGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGGTGTGCGCACATGATGT
* *
5527798 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTC-ATGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
5527862 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5527927 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
5527992 TATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
389 TATGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * *
5528057 AAAATGTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5528122 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5528187 GCATT-GCACGTAGAAATATGAAGGTCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5528251 GCGCATCCCATCTCTCTGGCCGACGTAGTGGCCGCCCGCTCGCTCGGCCGCTCGTTTTATCGGTT
648 GCGCATCCCGTCTCTCTGGCCG--GT-GTAG-TG--C-C-CG--C--CCGCTCGTTTCATCGGTT
* * * * * *
5528316 GGCCTAGGCATACGGAGTTCATTCCTAGTCTATGATCAGACCAGATCGAGGGTTGTGGCAGTAGG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGG
** * * * * *
5528381 ATTAGCAGCACGCAGAGGGTGACCCGACCGA-CCCTCGGCTTGCGCATCTCGCCCATCTGGCCGG
766 ATCGGCAGCACGTAGAGGGGGACCCGATCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
5528445 CTGAGCGCCCGCACG-TTCGTTTCGT-GGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTGTA
830 CTGAGCGCCCGCACGCTT-GTTT--TAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5528507 A
892 A
* * * * * *
5528508 GTATATGGAGTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
5528573 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCAGGGCACCATCACAGGAGCATTGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
5528638 ACCTGATCGACGGCATTAGGGTTTCGGCAATCGGGGGGGTCGGGGGGGGTGTGCGCATATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGGTGTGCGCACATGATGT
* * *
5528703 GCGATGGGTTCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5528768 CACCCCCTTAAAGAGTATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5528833 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5528898 ATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAGGTTTGGAGCCAAAAATCCATCCGAAAA
390 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
5528963 AATTTTAAAAAATCTCGAACCGAAAAAAATTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5529028 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-AATTTACAAGCCAT-AAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5529091 ATTGGCACGTAGAAATATGAAGATGTGCATAAACCCACCAAACACCCTATCGATCCACGGCTTGC
585 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
5529156 GCATCCCGTCTCTCT
650 GCATCCCGTCTCTCT
5529171 AGATGGGACA
Statistics
Matches: 3813, Mismatches: 392, Indels: 81
0.89 0.09 0.02
Matches are distributed among these distances:
890 11 0.00
891 808 0.21
892 470 0.12
893 806 0.21
894 296 0.08
895 391 0.10
896 107 0.03
897 5 0.00
898 4 0.00
899 1 0.00
900 1 0.00
901 4 0.00
902 111 0.03
903 308 0.08
904 276 0.07
905 212 0.06
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAG
AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TTGTTTTAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5526724 original size:26 final size:26
Alignment explanation
Indices: 5526685--5526735 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5526675 TTGACTTAGG
*
5526685 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGCTCATTCCCAGTCTAAA
* *
5526711 CATACGGAGCTCATTCCTAGTCTAA
1 CATACGAAGCTCATTCCCAGTCTAA
5526736 GATTGGATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGCTCATTCCCAGTCTAAA
Found at i:5527615 original size:26 final size:26
Alignment explanation
Indices: 5527579--5527631 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5527569 GATGACTTAG
5527579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5527605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5527631 G
1 G
5527632 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5529456 original size:339 final size:340
Alignment explanation
Indices: 5528835--5529515 Score: 1206
Period size: 339 Copynumber: 2.0 Consensus size: 340
5528825 GTCTGAAATG
5528835 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTAT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTAT
*
5528900 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAGGTTTGGAGCCAAAAATCCATCCGAAAAAA
66 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCATCCGAAAAAA
* *
5528965 TTTTAAAAAATCTCGAACCGAAAAAAATTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTG
131 TTTTAAAAAATCCCGAACCGAAAAAAATTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTG
5529030 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
196 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
5529095 GCACGTAGAAATATGAAGATGTG-CATAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCA
261 GCACGTAGAAATATGAAGATGTGCCA-AAACCCACCAAACACCCTATCGATCCACGGCTTGCGCA
5529159 TCCCGTCTCTCTAGAT
325 TCCCGTCTCTCTAGAT
* *
5529175 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTAT
* * *
5529239 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAATAAA
66 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCATCCGAAAAAA
*
5529304 TTTTAAAAAATCCCGAACC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTT
131 TTTTAAAAAATCCCGAACCGA-AAAAAATTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTT
5529368 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATT
195 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATT
* * *
5529433 GGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
260 GGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCA
*
5529498 TCCCGTCTCTCTGGAT
325 TCCCGTCTCTCTAGAT
5529514 GG
1 GG
5529516 CGTAGTGCCC
Statistics
Matches: 326, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
338 1 0.00
339 265 0.81
340 60 0.18
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (340 bp):
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTAT
GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCATCCGAAAAAA
TTTTAAAAAATCCCGAACCGAAAAAAATTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCAAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTAGAT
Found at i:5531551 original size:26 final size:26
Alignment explanation
Indices: 5531495--5531551 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
5531485 GTGGGTTGAC
5531495 TTAAGCATATGAAATTCATTCCCACT
1 TTAAGCATATGAAATTCATTCCCACT
* * *
5531521 CTAAGCATAT-AGAGTTCATTCCCAGT
1 TTAAGCATATGA-AATTCATTCCCACT
5531547 TTAAG
1 TTAAG
5531552 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (26 bp):
TTAAGCATATGAAATTCATTCCCACT
Found at i:5532374 original size:26 final size:26
Alignment explanation
Indices: 5532344--5532396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5532334 GTTAACTTAG
*
5532344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5532370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5532396 G
1 G
5532397 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5532951 original size:845 final size:848
Alignment explanation
Indices: 5529616--5537260 Score: 5972
Period size: 845 Copynumber: 8.7 Consensus size: 848
5529606 TTACAGTAGC
* * * ** * *
5529616 AGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGGCCCTCTGGCC
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* *
5529681 AGCTGAGC-CCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
66 GGCTGAGCGCC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * *
5529745 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGTTGG
130 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
5529810 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCTTAGCATCGTCGGAG
195 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATCGCCGGAG
* * ** * *
5529875 AACCTGACCGACGGCATTAGGGTTTTGGTAATCGGAGGGGCCGGGGGGGTGTGCGTACATGATGT
258 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
5529940 GTGATGGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
322 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5530005 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAA
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5530069 TGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
452 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * **
5530134 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAA
517 -TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
* * * * * *
5530199 AATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGT-GTCT
581 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5530263 TGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
646 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5530328 GTTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGC
711 ATTGGCATCCAGAAATATCAAGATCTGCCT-AA---A-C--CCAGCC--TCG-T-C-CG-CTT-C
** * ** * *
5530393 GCATCCCGTCTCTCTAACCGACATAGTACCTGCCCGCCAACCCGCCCGCTCCTTTCGTCG-GTTG
762 -CATCCCG-CTCT-T-TTCGTC--AGT--CTG---GCTTA---G---G---ATAT-G-CGAGTT-
*** * *
5530457 GC-TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGACAGT
804 -CATT--GC-T-C-G-GTT--TAAGCA-TC--GGATT-G----GACTGAGGGTTGTGGCAGT
* * * * ** * *
5530518 ACGATCGACAGCACACAGAGAGG-GACTCGGTCGATCCATGGCTTGCGCATCCCGCCCGTCTGGC
1 AGGATCGGCAGCACACAGAG-GGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
* * *
5530582 CGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCT-
65 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
5530646 ---AT-----G---------A-TC---G----GATCGGACCAAGGGTTGCGGCAGCACACGCTGG
130 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
5530686 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTGGGGGCACCAT-TGCCGGAGCATTACCGGA
195 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCT--C-GAGCATCGCCGGA
* * * * * * *
5530750 GAACATAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTACGTACATGATGT
257 GAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
** * * *
5530815 AAGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCA
322 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5530880 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * ** *
5530945 TGGGGACACTTTTTTCAAATTGTCATAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTT
452 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * * * * *
5531010 GGGCATGCCAAAAAAAATACAAGGATCATGTCTACCAATTTTGGGGACAAAACT-TATTCCGAAA
517 -TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA-TCCAAAA
* * * * *
5531074 AAATTTTAAAAAATCCCAAAACGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
580 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5531139 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
645 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5531204 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTG
710 CATTGGCATCCAGAAATATCAAGATCTGCCT-AA---A-C--CCAGCC--TCG-T-C-C-GC-T-
* * * * ** * * *
5531269 TGCATCCCG-TCTCTCTGGCCAGCGTACTGCCCGCCCGCCCACCCGCCCACTCATTTCGTCTGTT
760 TCCATCCCGCTCT-TTTCGTCA--GT-CT----G---GCTTA---G--GA-T-A-TGCG--AGTT
* * *** ** **
5531333 GGC-TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCAAC
804 --CATT--GC-T-C-G-G-T--TT---AAGC----ATCGGATTGGACTGAGGGTTGTGGCAGT
* * * * ** ** *
5531395 AGGATTGGTAGCACGCAGAGGGGGACCCGGTTGATCCTTGGCTTACGCATCCCGCCCCTCTGGTC
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* * * * * *
5531460 GGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATATGAAATTCATTCCCACTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
5531525 GCATATAGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGATGGTTACGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5531590 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGTACCATCGCCGGAGA
196 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-TCG-AGCATCGCCGGAGA
* * ** * *
5531655 ACCTAATCGGTGGCATTGGGGTTTCGGAGATCGAGGGGGCCGGGGGGCGTGTGCGCACATGATGT
259 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGT
5531720 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
322 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5531785 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAA
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5531850 TGGGGACGCTTTATTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAGCTGAATTATTTT
452 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-TTTT
* * *
5531915 GTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
516 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
** * *
5531980 AATTTTAAAAAATCATGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
581 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5532045 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAATTTAGATGCCATAAAAATGGC
646 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5532110 ATTGGCATCCAGAAATATCAATATCTGCCTAAA-CCAGCC-CGTCC-C-TCCA-CCCGCTCGTTT
711 ATTGGCATCCAGAAATATCAAGATCTGCCTAAACCCAGCCTCGTCCGCTTCCATCCCGCTCTTTT
5532170 CGTCAGT-TGGCTTAAGGATATG-GAGTTCATT-CTCGGTTTAAG-ATCGGATTGGACTGAGGGT
776 CGTCAGTCTGGCTT-AGGATATGCGAGTTCATTGCTCGGTTTAAGCATCGGATTGGACTGAGGGT
*
5532231 TGTGGTAGT
840 TGTGGCAGT
* *** * * *
5532240 AGGATCGGCAACATGTAGAGGTAGACCCGGCGGATCCCCGGCTTGCGCATCCCACCCCTCTGGTC
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* * *
5532305 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5532370 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGCACATGTTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5532435 CTCGGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCTTCGGAGCATCGTCGGGGA
196 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATCGCCGGAGA
* * * *
5532500 ACCTGACCGACAGCATTGGGGTTCCGGCGATCGGTGGGGTCGGGGGGCGTGTGCGCACATGATGT
259 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGG-GGGGGCCGGGGG-GTGTGCGCACATGATGT
5532565 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
322 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5532630 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCGAGTAGCCATTAAAGTGTCTGAAA
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5532695 TGGGGACGCTTTATTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTT
452 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-TTTT
*
5532760 TTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
516 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
* * * *
5532825 AATTTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
581 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5532890 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
646 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5532955 ATTGGCATGCAGAAATATCAATATCTGCCTAAA-CCAGCC-CGTCCGC--CC-GCCCGTTCTTTT
711 ATTGGCATCCAGAAATATCAAGATCTGCCTAAACCCAGCCTCGTCCGCTTCCATCCCGCTCTTTT
* * * * ***
5533015 CGTCGGT-TGCCTTAGGCATAT-CGAGTTCATT-CCCAGTTTAAG-ATCGGACCAGACTGAGGGT
776 CGTCAGTCTGGCTTAGG-ATATGCGAGTTCATTGCTCGGTTTAAGCATCGGATTGGACTGAGGGT
*
5533076 AGTGGCAGT
840 TGTGGCAGT
* ** * * * *
5533085 AGGATGGGCAGCACGTAAAGGCAGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTG
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* * *
5533150 GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5533215 GCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGTTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5533280 CTCGGGCATGTCCTGGTGTCGCATTTTTCTTCGTCGGGGCACCA--TC--G--T---CGGAGAAC
196 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCATCGCCGGAGAAC
* ** *
5533336 CTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTGCGA
261 CTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
5533401 TGGGTGCTGGTA-------C-----TTGG--CCCTATCCCTCATCAAACCTTGAGAACTCACACC
326 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
5533452 CCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAGGGG
391 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5533517 GACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGAATTTTTTTGTGC
456 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGC
* * *
5533582 ACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATT
520 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATT
* * *
5533647 TTAAAAAATACCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
585 TTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5533712 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
650 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
5533777 GCAGT-CAGAAATATGAAGATGTTCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTACGCA
715 GCA-TCCAGAAATATCAAGATCTGCCTAAACCCA---G----CC--TCG-TCC---GCTT-C-CA
* * * *
5533841 TCCCG-TCTTTCTGAGCGGCGTAGTGCCCGCCTGCCCGCCTTCCCGCACGTTTCGTCG-GTTGGC
764 TCCCGCTCTTT-T---CGTC--AGT------CTG---G-CTT--AGGA--TAT-G-CGAGTT--C
* * ** *
5533904 -TTAGGCATACGAAGTTCATTCCCAGTATAAGATTGGACCAAATTGAGGGTTGCGGCAGT
805 ATT--GC-T-CG--G-T--TT--AAGCATCGGATTGGA-C----TGAGGGTTGTGGCAGT
* * * * * * *
5533963 AGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCGCCCGTCTAGCC
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
* ** * * *
5534028 GACTGAGCGCTTGCACGATCGTTTCGTGGGTTG-TTTAGGCATACGGAGTTCATTCCCAGCCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5534092 GCATATGGACTTCATTCCCAGTCTAAGATTCGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5534157 CTCGGGCATGTGCTTGTGCCGCATTTTTCTTC-ACTGGGG---CA---C---CATCGCCGGAGAA
196 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGGGCACCATCTCGAGCATCGCCGGAGAA
* * *
5534212 CCTGACCGGCGGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
260 CCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
5534277 ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
325 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
5534342 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
390 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
5534407 GGACACTTTTTTCAAATGGTCACAAGATATTGTACACTTCAAGTTTTTCGCTGAATTTTTTTTTG
455 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTTTG
** ** * ** *
5534472 CATGGTAACAAAAATACAAGGATCGTGTCTACCAAGTTTGAGGCCAAAACTCTTTCCCAAAAAA-
519 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAAT
* * *
5534536 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGC
584 TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
** * * *****
5534601 CATTGAAAC-TCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCTAGACCGGCGGCAT
649 CA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
5534665 TGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCC
713 TGGCATC-CAGAAATATCAAGATCTGCCT-AA---A-C--CCAGCC--TCG-T-C-C-GCTT--C
5534729 CATCCCGTCACTCTGCCCGACGTAGTGCCCGCCCGTCCGCTC-GTTTCCTCGATTGGCTTAGGCA
762 CATCCCG---CTCT--------T--T---------T-CG-TCAG-----TC---TGGCTTAGG-A
* * * * * ** *
5534793 TA--CGAAGTTCATT-CCCAGTCTAAG-ATCGG-CTGAACCAAGGGTTGTGGCAGC
794 TATGCG-AGTTCATTGCTCGGTTTAAGCATCGGATTGGACTGAGGGTTGTGGCAGT
* ** * * * * * *
5534844 AAGATCAACAGCACACAGAGGGAGACCTGGCCGAACCCCGGCTTACGCATCCCACCCCTTTGGCC
1 AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
**
5534909 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5534974 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAAGGGTTGTC-GCAGCACATGCTG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-GGACCGAGGGTTG-CGGCAGCACATGCTG
* * * * * *
5535037 GGCTCGAGCATGTGCTGGTGCCACATTTTT-TTCGCCGAGGCACCATCGTCGGAGCATCACCGGA
194 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATCGCCGGA
** **
5535101 GAACCTGACCGAC-GCATTGGGGTTTCGATGATC-GGGGTCCCGGGGGGTGTGCGCACATGATGT
257 GAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
5535164 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
322 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
5535229 CAACTCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAA
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5535294 TGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACATTTCGAGTTTTTGGCTGAATTTTTTT
452 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * ** *
5535359 GTGCCTACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAA
517 -TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAA
* * *
5535424 AATTTTAAAAAATCCCGAACCGTAACAAGATTCGAAAATCGTGAAAAATAGAAAA-GAGTCGTCT
581 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5535488 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGG
646 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGG
* *
5535553 CCATTGGCA-CGTAGAAAATACTGAAAGATGCTGCCTAACCCCACCTACCACGCCTATCGATTCC
710 -CATTGGCATC-CAG-AAATA-T-CAAGAT-CTGCCTAA----A-C--CCA-GCC--TCG--T-C
* * * * * ** *
5535617 ACAGCTTCCATCCCG-TC-TCTCG--AGCCAGCCGTAGTGA-CCGCCGGCCCGCCTCCTCCCCCC
756 -C-GCTTCCATCCCGCTCTTTTCGTCAGTCTGGCTTAG-GATATG-C-G--AG--T--T-----C
* * * ** * * *
5535677 GGGGCTGTGTCGGTCGGTTT-AGCGTTAGGTACTACAGAGTTCAGTCCCAGTCTAGATCAGGACC
805 ----AT-TG-C--TCGGTTTAAGC-ATCGG-A-T-TGGA-CTGAG----GGT-T-G-T--GG--C
*
5535741 AGACAG
846 AG---T
* * * ** * *
5535747 AGGGTTACGACAGCCAAGATCAAGCACGCACTAGATGAGGACCCGAACGATCCCTGGCTTGTGCA
1 A-GGAT-CG---G-C-AG--C-A-CA--CA-GAG-GGA-GACCCGGCCGATCCCCGGCTTGCGCA
* * *
5535812 TCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAG
50 TCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* ** * ** * *
5535877 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCCGACCAAATCGAGGGTTAC
115 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGC
* * * * * * *
5535942 AGCAGCACATACTAGGCTCGGGCATGTGCTGGTATCGTATTTTTCCCGATGCATCATCGGAGCAC
180 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTT--C--T---TCGTCGGGGCAC
** * *** * *
5536007 CATCTTCGAAGCATCATCGGTGAACCTGACCGGTAGCATTGGGGTTTCGACGATCGGGGGGCCCG
238 CATC-TCG-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-
* *
5536072 GGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATCTTGGCCCCCTATC
300 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5536137 CCTCATCAAACCTCGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCT
364 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5536202 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
429 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
5536267 CGAGTTTTTAGCTGAATTTTTTTGTCCACGCCAA-AAAACATACAATGATCACGTCTACCAACTT
494 CAAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTT
* * ** * *
5536331 TGGGGCAAAAACTCCTTCCAAAAAAATAGTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
557 TGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCA
* *
5536396 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
622 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * * *
5536461 G-ATCTTACAAGCCATAAAAAAGGAATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA-CC
687 GAAT-TTACAAGCCATAAAAATGGCATTGGCATCCAGAAATATCAAGATCTGCCTAAACCCAGCC
** * * ** * *** * *
5536524 TACCACC-CTATCGATCCATGACTTGCGCATCCTGTGTCTCTGGC-CAGCATAGTGCCCGCCCTC
751 T-CGTCCGCT-TCCATCC-CG-C-T-C-TTTTC-GTCAGTCTGGCTTAGGATA-TG--CG-----
* ** *** * * * * * **
5536587 CCGCCCACCCACTC-GTTT-CGTCGGTTGGCTTAGG-C-GTACGGAGTTCATTCCCAGTCT
800 -AGTTCA-TTGCTCGGTTTAAG-C-ATCGGATT-GGACTG-A-GG-GTT--GTGGCAG--T
* * * * * ** *** * * * *** *
5536644 AAGAT-TGAACCAAATC-GAGGGTTATGGTAGCAAGATTGGTAGCACGTAGAGAG-GGA-CCCGA
1 AGGATCGGCAGCACA-CAGAGGG--A--G-A-CCCGGCCGAT-CCCCG--GCTTGCGCATCCCG-
* ** ** * * * * ** * * **
5536705 TCGATC-CCT-GGCTTACGCATCCCGC-C-CT--TCTGGCCGGTTGA-GT--GCCTGCACGCTCG
55 CCCCTCTGGTCGGCTGA-GC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT--ACG-GAG
* * * * ** * **
5536761 TTTCGTGGGT-ACACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGG
115 -TTCAT---TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGG
* * * *
5536824 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
176 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT
* * *
5536889 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGGCCGGG
241 C-TC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGGGCCGGG
** *
5536954 GGGTGTGCGCACATGATGTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCGCTATCCCTC
303 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5537019 ATGAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
368 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
5537084 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
433 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
* *
5537149 TTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGCATCATGTCTACCAAGTTTGGG
498 TTTTTAGCTGAA-TTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
5537214 GCCAAAAATTCTTCCGAAAATATTTTACAAAATCCCGAACCGTAAAA
561 GCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
5537261 TTTTACAAAA
Statistics
Matches: 5615, Mismatches: 762, Indels: 755
0.79 0.11 0.11
Matches are distributed among these distances:
817 5 0.00
818 353 0.06
819 4 0.00
820 4 0.00
822 1 0.00
825 1 0.00
826 2 0.00
829 2 0.00
830 3 0.00
832 33 0.01
833 11 0.00
834 36 0.01
836 1 0.00
837 7 0.00
838 5 0.00
839 1 0.00
841 3 0.00
842 2 0.00
843 2 0.00
844 3 0.00
845 992 0.18
846 7 0.00
850 4 0.00
853 2 0.00
854 3 0.00
855 2 0.00
856 2 0.00
857 3 0.00
858 1 0.00
859 4 0.00
860 5 0.00
861 7 0.00
862 2 0.00
863 4 0.00
864 5 0.00
865 2 0.00
866 1 0.00
867 3 0.00
868 2 0.00
869 3 0.00
870 3 0.00
871 2 0.00
872 5 0.00
873 9 0.00
874 14 0.00
875 88 0.02
876 348 0.06
877 478 0.09
878 295 0.05
879 135 0.02
880 15 0.00
881 107 0.02
882 117 0.02
883 15 0.00
884 22 0.00
885 17 0.00
886 104 0.02
887 17 0.00
888 15 0.00
889 23 0.00
890 466 0.08
891 281 0.05
892 45 0.01
893 10 0.00
894 8 0.00
895 11 0.00
896 28 0.00
897 17 0.00
898 16 0.00
899 4 0.00
900 5 0.00
901 4 0.00
902 111 0.02
903 124 0.02
904 11 0.00
905 390 0.07
906 9 0.00
907 4 0.00
908 6 0.00
909 8 0.00
910 8 0.00
911 8 0.00
912 4 0.00
913 3 0.00
914 2 0.00
915 2 0.00
916 5 0.00
917 4 0.00
918 4 0.00
919 174 0.03
920 3 0.00
921 6 0.00
922 3 0.00
924 1 0.00
925 4 0.00
926 8 0.00
927 40 0.01
928 20 0.00
929 12 0.00
930 12 0.00
931 313 0.06
932 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (848 bp):
AGGATCGGCAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATCCAGAAATATCAAGATCTGCCTAAACCCAGCCTCGTCCGCTTCCATCCCGCTCTTTTCGTCA
GTCTGGCTTAGGATATGCGAGTTCATTGCTCGGTTTAAGCATCGGATTGGACTGAGGGTTGTGGC
AGT
Found at i:5533220 original size:26 final size:26
Alignment explanation
Indices: 5533190--5533241 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5533180 TTGACTTAGT
5533190 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
5533216 CATACGGAGTTCATTCCCTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5533242 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5534105 original size:26 final size:26
Alignment explanation
Indices: 5534066--5534118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5534056 GGTTGTTTAG
*
5534066 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGACTTCATTCCCAGCCTAA
* *
5534092 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGCCTAA
5534118 G
1 G
5534119 ATTCGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGCCTAA
Found at i:5535190 original size:890 final size:896
Alignment explanation
Indices: 5533012--5537260 Score: 4806
Period size: 890 Copynumber: 4.8 Consensus size: 896
5533002 CGCCCGTTCT
* * * *
5533012 TTTCGTCGGTTGCCTTAGGCATATCG-AGTTCATTCCCAGTTTAAGATCGGACCAGA-CTGAGGG
1 TTTCGTCGGTTGGCTTAGGCATA-CGAAGTTCATTCCCAGTCTAAGATCGGACCAAATC-AAGGG
* * * *** ** * * *
5533075 -TAGTGGCAGTAGGATGGGCAGCACGTAAAGGCAGACCCGGCCGATCCCCGGCTTGCGTATCCCG
64 TTA-CGGCAGCAAGATCAACAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCG
** * * *
5533139 CCCCTCTGGTGGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCAT
128 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
5533204 TCCCAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAG
193 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAT-AGACCGAGGGTTGCGGCAG
* * * *
5533269 CACATGTTGGGCTCGGGCATGTCCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-
256 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGC
* * * *
5533333 A--ACC--TG-ACC-GA-CG--GCATTGGGGTTCCGATGATCGGGGGGGCCGGAGGGTGTGCGCA
321 ATCACCGGAGAACCTGACCGACGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
*
5533389 CATGATGTGCGATGGGTGCTGGTA-------C-----TTGG--CCCTATCCCTCATCAAACCTTG
386 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
5533440 AGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
451 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
5533505 GTCTAAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGA
516 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
5533570 ATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCA
581 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
5533635 TCCGAAAAAATTTTAAAAAATACCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
646 TCC-AAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACG
5533700 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
710 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
5533765 AAAATGGCATTGGCA-GTCAGAAATATGAAGATGTTCCTAAACCCACCTGCCACCCTATCGATCC
775 AAAACGGCATTGGCACAT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * ** * * *
5533829 ATGGCTTACGCATCCCGTCTTTCTGAGCGGCGTAGTGCCCGCCTGCCCGCCTTCCCGCACG
839 ACGGCTTGCCCATCCCGTCTCTCTGCCCGACGTAGTG-CCGCCGGCCCG-C-TCCCGCTCG
* * **
5533890 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATTGGACCAAATTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTT
* * * ** * * * *
5533955 GCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCGCCC
66 ACGGCAGCAAGATCAACAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * ** * *
5534020 GTCTAGCCGACTGAGCGCTTGCACGATCGTTTCGTGGGTTG-TTTAGGCATACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
5534084 CAGCCTAAGCATATGGACTTCATTCCCAGTCTAAGATTCGATTGGACCGAGGGTTGCGGCAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGA-TAGACCGAGGGTTGCGGCAGCAC
* * *
5534149 ATGCTGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCACTGGGGCACCA---TC---G----
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC
* * *
5534204 -CCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACA
324 ACCGGAGAACCTGACCGAC-GCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* *
5534268 TGATGTGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
388 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
5534333 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
453 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
5534398 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATATTGTACACTTCAAGTTTTTCGCTGAAT
518 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** * * *
5534463 TTTTTTTTGCATGGTAACAAAAATACAAGGATCGTGTCTACCAAGTTTGAGGCCAAAACTCTTTC
583 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
5534528 CCAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGT
648 CAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
** * * **
5534593 CGTCTTGCCATTGAAAC-TCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCTAGACC
713 CGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
**
5534657 GGCGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
777 AACGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
5534722 GCTTGCCCATCCCGTCACTCTGCCCGACGTAGTG-C-CC-GCCCG-T-CCGCTCG
842 GCTTGCCCATCCCGTCTCTCTGCCCGACGTAGTGCCGCCGGCCCGCTCCCGCTCG
* * ** *
5534772 TTTCCTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG-CTGAACCAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTT
** * * * *
5534836 GTGGCAGCAAGATCAACAGCACACAGAGGGAGACCTGGCCGAACCCCGGCTTACGCATCCCACCC
66 ACGGCAGCAAGATCAACAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* **
5534901 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
5534966 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTC-GCAGCA
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-TAGACCGAGGGTTG-CGGCAGCA
* * *
5535030 CATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTT-TTCGCCGAGGCACCATCGTCGGAGCAT
258 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
* **
5535094 CACCGGAGAACCTGACCGACGCATTGGGGTTTCGATGATC-GGGGTCCCGGGGGGTGTGCGCACA
323 CACCGGAGAACCTGACCGACGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
5535158 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
388 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
5535223 AACTCACAACTCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
453 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
5535288 CTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACATTTCGAGTTTTTGGCTGAAT
518 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * **
5535353 TTTTTTGTGCCTACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTC
583 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
5535418 CAAAAAAATTTTAAAAAATCCCGAACCGTAACAAGATTCGAAAATCGTGAAAAATAGAAAA-GAG
648 CAAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG
*
5535482 TCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
712 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AA
* * *
5535547 AAATGGCCATTGGCACGTAGAAAATACTGAAAGATGCTGCCTAACCCCACCTACCACGCCTATCG
776 AAACGG-CATTGGCACATAG-AAATA-TG-AAGATG-TGCCTAAACCCACCTACCAC-CCTATCG
* * * * *
5535612 ATTCCACAGCTT--CCATCCCGTCTCTCGAGCCAGCCGTAGTGACCGCCGGCCCGCCTCCTCCCC
835 A-TCCACGGCTTGCCCATCCCGTCTCTC-TGCCCGACGTAGTG-CCGCCGGCCCG-CT-C-CCGC
*
5535675 CCGGGG
894 TC---G
* * * *
5535681 CTGTGTCGGTCGGTTTAGCGTTAGGTACTAC-AGAGTTCAGTCCCAGTCT-AGATCAGGACCAGA
1 -T-T-TC-GTCGG-TTGGC-TTAGGCA-TACGA-AGTTCATTCCCAGTCTAAGATC-GGACCAAA
* * * ** *
5535744 -CAGAGGGTTACGACAGCCAAGATCAAGCACGCAC-TAGA-TGAGGACCCGAACGATCCCTGGCT
57 TCA-AGGGTTACGGCAG-CAAGATCAA-CA-GCACACAGAGGGA-GACCCGGCCGATCCCCGGCT
* * * *
5535806 TGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCAT
117 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
5535871 ACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCCGACCAAATCGAG
182 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-CGA-TAGACCGAG
* * * * ** * **
5535936 GGTTACAGCAGCACATACTAGGCTCGGGCATGTGCTGGTATCGTATTTTTCCCGATGCATCATCG
245 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT--C--T---TCGCCG
* * * * *
5536001 GAGCACCATCTTCGAAGCATCATCGGTGAACCTGACCGGTA-GCATTGGGGTTTCGACGATCGGG
303 GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC-G-ACGCATTGGGGTTTCGACGATCGGG
* * *
5536065 GGGCCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATCTTGGCC
366 GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
5536130 CCCTATCCCTCATCAAACCTCGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
429 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
5536195 TGCTGCTAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
494 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
5536260 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCAA-AAAACATACAATGATCACGTCTA
559 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCATGTCTA
* * * * *
5536324 CCAACTTTGGGGCAAAAACTCCTTCCAAAAAAATAGTAAAAAATCCCGAACCGCAAAAAGTTTCA
623 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT-TTAAAAAATCCCGAACCGTAAAAAGTTTCG
* *
5536389 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
687 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
5536454 ATTGTATG-ATCTTACAAGCCATAAAAAAGGAATTGGCATGCA-A-AAATATGAAGATGTGCCTA
752 ATTGTATGAAT-TTACAAGCCATAAAAACGGCATTGGCA--CATAGAAATATGAAGATGTGCCTA
* * * * * * *
5536516 AACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCTGTGTCTCTGGCC-AGCATAGTGCC
814 AACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGCCCGA-CGTAGTG-C
** * *
5536580 CGCCCTCCCGCCCACCCACTCG
877 CGCCGGCCCG--CTCCCGCTCG
* * * * *
5536602 TTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGAACCAAATCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTT
* * **** ** ** * *
5536667 ATGGTAGCAAGATTGGTAGCACGTAGAGAGG-GACCCGATCGATCCCTGGCTTACGCATCCCGCC
66 ACGGCAGCAAGATCAACAGCACACAGAG-GGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * * * **
5536731 CTTCTGGCCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTACACTTAGGCATACGGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
5536796 CCAGTCTAAG-AT-C-G-G---A---CC-G-----GAT---T-----GAGGGTTGCGGTAGCACA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATAGACCGAGGGTTGCGGCAGCACA
* * * *
5536837 TGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCA
* * * *
5536902 TCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGGCCGGGGGGTGTGCGCACA
325 CCGGAGAACCTGACCGAC-GCATTGGGGTTTCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACA
** * * *
5536967 TGATGTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATGAAACCTCAAG
388 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
5537032 AACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
453 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
5537097 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
518 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * *
5537162 TTTTTTTGTGCATGCCAACAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAAATTCTT
582 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
5537227 CCGAAAATATTTTACAAAATCCCGAACCGTAAAA
647 CC-AAAAAAATTTAAAAAATCCCGAACCGTAAAA
5537261 TTTTACAAAA
Statistics
Matches: 2886, Mismatches: 368, Indels: 233
0.83 0.11 0.07
Matches are distributed among these distances:
869 2 0.00
871 2 0.00
872 3 0.00
873 2 0.00
874 4 0.00
877 187 0.06
878 338 0.12
879 128 0.04
880 18 0.01
881 109 0.04
882 161 0.06
883 2 0.00
884 4 0.00
886 50 0.02
887 3 0.00
888 1 0.00
889 10 0.00
890 510 0.18
891 277 0.10
892 29 0.01
893 5 0.00
894 2 0.00
895 6 0.00
896 34 0.01
897 19 0.01
898 9 0.00
899 1 0.00
900 2 0.00
901 6 0.00
902 2 0.00
903 1 0.00
905 1 0.00
906 4 0.00
908 1 0.00
909 2 0.00
910 2 0.00
911 7 0.00
912 102 0.04
913 9 0.00
914 39 0.01
915 22 0.01
916 26 0.01
917 17 0.01
918 14 0.00
919 175 0.06
920 6 0.00
921 1 0.00
924 12 0.00
925 26 0.01
926 32 0.01
927 41 0.01
928 22 0.01
929 13 0.00
930 12 0.00
931 313 0.11
932 60 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTT
ACGGCAGCAAGATCAACAGCACACAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATAGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCAC
CGGAGAACCTGACCGACGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACG
GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCCCATCCCGTCTCTCTGCCCGACGTAGTGCCGCCGGCCCGCTCCCGCTCG
Found at i:5535897 original size:26 final size:26
Alignment explanation
Indices: 5535867--5535918 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5535857 GTTGACTTAC
5535867 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5535893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5535919 CATCCGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5538068 original size:26 final size:26
Alignment explanation
Indices: 5538016--5538068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5538006 GTTGACTTAG
* *
5538016 GCATACGGAGTTCATTCCCGGCCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
5538042 GCATACGGAGTTCATTCCCAGAGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5538068 G
1 G
5538069 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:5538935 original size:26 final size:26
Alignment explanation
Indices: 5538906--5538958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5538896 GTTGACTTAG
*
5538906 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
5538932 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
5538958 G
1 G
5538959 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:5539822 original size:26 final size:26
Alignment explanation
Indices: 5539793--5539842 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5539783 GACTTAGGCG
5539793 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
5539819 TACGGAGTTTATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5539843 ATCAGACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:5540710 original size:26 final size:26
Alignment explanation
Indices: 5540681--5540733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5540671 GTTGACTTAG
5540681 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5540707 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5540733 G
1 G
5540734 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5541621 original size:26 final size:26
Alignment explanation
Indices: 5541585--5541636 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5541575 TTGGCTTAGA
5541585 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5541611 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5541637 ATGAAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5541852 original size:903 final size:901
Alignment explanation
Indices: 5537587--5542917 Score: 6864
Period size: 903 Copynumber: 6.0 Consensus size: 901
5537577 CTTGGCTCGT
* *
5537587 GAAAAAATTTTAAAAAATCCTAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
5537652 CGTCTTGCCATGAAACTTTACGTGACA-GCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAA
66 CGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
5537716 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
130 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
5537781 ACTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGTCCGTCCGTTCATTTCATC
195 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * **
5537846 GGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATTAGATCAGACCAAGGGTTACGACAG
259 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * * * * * *
5537911 TAGGATCGACAGCACGCAGAGGGGGA-CCTGGCCGATCCTTGGTTTACGCATCTCGCCTCTCTTG
324 CAGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGATCC-CGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
5537975 TC-AGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGCC
388 CCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * *
5538039 TAAGCATACGGAGTTCATTCCCAGAGTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCT
452 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGACAGCACATGCT
* * ** * * * **
5538104 GGGCTTGGGCATGTGCTGGTGCAGCATTTTTCTTTGTCAGGGCACCATAACCGGAGCATCATTGG
516 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGG
** * * *
5538169 AGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCATATGAT
581 AGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGAT
*
5538234 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT--AGAACT
645 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5538297 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAATTGTCTAA
710 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** *
5538362 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATATTT
775 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
5538427 TTATGCATACCAAAAAAAATACAAGGATCAT-GTCTGCCAAGTTTGGGGCCAAAACTCCTTTC
840 TTGTGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * ** *
5538489 GAAAAAATTTTAAAAAATCCTGAACCGCATAAAGTTTCAGAAATTGTGAAAAATAAAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
5538554 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
5538619 AAGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACAG
131 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * ** * * *
5538684 CTTGTGCGTCCTGTCTCTCTGGTCGGCATAGTGCCCACCCATCCGCCGGCCCGCTCGTTTCATTG
196 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
5538749 GTTGGCTTAGGCATACGAAGTTCATTCAC-AGTCTAAGAT-TGAACCACACCGA-GGAT----T-
260 GTTGGCTTAGGCATACGGAGTTCATTC-CTAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTA
* * *
5538806 ----G--CGGCAGCACGTAGAGGGGGACCC-GACCGATCCCCGGCTTGTGCATCCCGCCCCTCTG
323 GCAGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTG
* * *
5538864 GCCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
387 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
5538929 TAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTTCG--TG-----GGT
452 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGACAGCACATGCT
* * ** * *
5538987 TGACTTAGGCA-----T-ATG--G-A--GTTCATTCATCGGGGCACCATCATCGGAGCATCACCG
516 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGCACCATCATCGGAGCATCACCG
* ** * *
5539041 GAGAACCTGACCCG-CGGCATTGGGGTTCCGATGATC-GGGGGG-CTGGGGGTGTGCGCTCATGA
580 GAGAACCTGA-CCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
*
5539103 TGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
644 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
5539168 TGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTG
709 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5539233 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAAATTT
774 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
5539298 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
839 TTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** * **
5539361 GAAAGAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAATTTGTGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
5539426 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5539491 ATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
131 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
5539556 CTTGCGCATCCCGTCTCTCTGGCCGGGGTAGAGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCA
196 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
5539621 GTTGGCTTAGGCATATGGAGCTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGC
260 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
* * *
5539686 AGGATCGGCAGCATGCAGAGGGGGACCC-GGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
325 AGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
5539750 CGATTGAGCGCCCGTATGCTTGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTA
389 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
5539815 AGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCCA-ACTGAGGGTTGCGACAGCACATGCTG
454 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGAC-GAGGGTTGCGACAGCACATGCTG
* * * * *
5539879 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCATCATCACCGGAGCATCACCGGA
517 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGA
* * * *
5539944 GAACCTGACTGACGACATTGGGCTTCCGGCGATCGGGGGGACCAGGGGGGGTTTGCGCACATGAT
582 GAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGAT
*
5540009 GTGTC-ATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAAC
645 GTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5540073 TCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
709 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5540138 AAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGT
774 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
5540202 TTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
839 TTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
5540265 GAAGAAATTTTAAAAAAT-CTCGAACTGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAG
1 GAAAAAATTTTAAAAAATCCT-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
5540329 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
65 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
5540394 AATGGCATGGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
130 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** *
5540459 GCTTAAGCATCCCGTCTCTCTGGCCGAG-GTAGT-----------GCCAGCCCGCTCGTTT-GTC
195 GCTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * * *
5540511 GGTTGGCTTAGGCATACGGAATTCATTCCCAGTTTAAGAT-TGAACTAGACTGAGGGATACGGTA
259 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTA
* * * ** * * *
5540575 CCAAGATCGACAGCACATAGCGGGGGACCC-GGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTG
323 GCAGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTG
* * *
5540639 GCCGGCTGAGCGCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
387 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
5540704 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCT
452 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGACAGCACATGCT
* * * * * * * *
5540769 GGGCTCGGGCAAGTGCTGGGGCCACATTTTTCTTCGTCGCGGCACCATCGTCGGAGCATCGCCGA
516 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGG
* * * *
5540834 AGAACCTGACCGACGGCATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
581 AGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
5540899 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
646 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5540964 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAATTGTCTGAA
711 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5541029 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTACCTGAATTTTTT
776 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5541094 TGTGCATTCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCAAAAAATCCTTCT
841 TGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
5541155 GAAAAAATATTAAAAAAT-CTCAAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
1 GAAAAAATTTTAAAAAATCCT-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
5541219 TCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
65 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
5541284 AATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
130 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
5541349 GCTTGCGCATCCCGTCTCTCTGGCCAGCGTTGTGCTCGCCTGCCCGCCCGCCCGCTCGTTTCGTC
195 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * *
5541414 AGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCAGTAG
259 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * * * * *
5541479 CAGGATCGGTAGCACACAGAGGGGGACTC-GACAGATCCTCGGCTTGCGCATCCGGCCCGTCTGG
324 CAGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGATCC-CGGCTTGCGCATCCCGCCCCTCTGG
* * * * * *
5541543 CTGGCTGAGCACCCGCACGCTCGTTTCGTTGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCT
388 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
5541608 AAGCATACGGAGTTCATTCCCAGTCTAAGATGAAATCAGATCGAGGGTTGC-AGCAGCACATGCT
453 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGA-CAGCACATGCT
* * * *
5541672 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCGTCACCGG
516 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGG
* * ** **
5541737 AGAACCTGACCGACGATATTGTGGTTCCGGCGATCGGGGTTGCCGGGGGGTGTGCGCACACAATG
581 AGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
5541802 TGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
646 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5541867 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
711 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5541932 ATGGGGACACTTTTTTCAAATGCTCATAAAATCTTGTACACTTCGTGTTTTTA-CTTGAATTTTT
776 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* *
5541996 TTGTGCATGCCAACAAAAATACGAGGATCAT-GTCTAACAAGTTTGGGGCCAAAACTCCTTCC
840 TTGTGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * * *
5542058 GAAAAAGTTTTAAAAAATCCCAAACCGCAAAAAGATTCCAAAATCCTGAAAAATAGAGAATGAGT
1 GAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
5542123 CGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *** * *
5542188 ATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCATATTATCGATTCACTG
131 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** *
5542253 CTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCCGCCCGCCC-CCTCGCTTGTTTCGTC
196 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCC-CGCTCGTTTCGTC
* *
5542317 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CTGTACCGAGGGTTGTGGTA
259 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTA
* * * *
5542381 GCAGGATCGGCAGCACGCAAAAGGGGA-CCTGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTA
323 GCAGGATCGGCAGCACGCAGAGGGGGACCCTGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTG
* * *
5542445 GCCGACTGAGCGCCCGCACGTTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
387 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * *
5542510 TAAGCATACGAAGTTCATTTGCAGTCTAAGATCAGACCGGACCGAGGATTGCGACAGCACATGCT
452 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGACAGCACATGCT
* ** * * * * *
5542575 AGGCTCGGGCATGTATTGGGGTCGTATTTTTCTTCATCGGGGCACCATCGTCGGAG-A--A-C-T
516 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGG
* * ** * *
5542635 TGAA-CTG--TG--G-CATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTTGTGCACACATCAT
581 AGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGAT
* * *
5542694 GTGCAATGGGTGCTGGTACTTGGCCCTCAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
645 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5542759 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTTA
710 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5542824 AATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
775 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* *
5542889 TTTTTGCATACCAACAAAAATACAAGGAT
839 TTTGTGCATGCCAACAAAAATACAAGGAT
5542918 TACCTGTACC
Statistics
Matches: 3877, Mismatches: 463, Indels: 186
0.86 0.10 0.04
Matches are distributed among these distances:
870 72 0.02
871 3 0.00
872 458 0.12
873 58 0.01
874 4 0.00
875 1 0.00
877 2 0.00
878 1 0.00
882 1 0.00
883 11 0.00
884 153 0.04
885 1 0.00
886 1 0.00
888 1 0.00
889 151 0.04
890 467 0.12
891 319 0.08
892 43 0.01
893 188 0.05
894 31 0.01
895 1 0.00
896 1 0.00
897 5 0.00
898 3 0.00
899 1 0.00
900 4 0.00
901 62 0.02
902 300 0.08
903 1059 0.27
904 326 0.08
905 148 0.04
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
GGATCGGCAGCACGCAGAGGGGGACCCTGGCCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGAAC
CTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
Found at i:5544932 original size:879 final size:871
Alignment explanation
Indices: 5543023--5546546 Score: 4441
Period size: 879 Copynumber: 4.0 Consensus size: 871
5543013 TATAGGGTCA
* * * * * **
5543023 GATCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATTTGCTGGTGTCGTATTTTTCTTCGTCG
1 GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
* * * *** * *
5543088 -GGTCACCATCACC-AGAGCATCGTTGGAGAACCTGACCCATGGCAATGGG-GTTCCGACGGTCG
66 AGG-CACCATCGCCGAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCG
* *
5543150 AGGGGGCCAGGGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGG
130 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
5543214 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
194 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATG
*
5543279 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
259 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
5543344 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
324 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
5543409 ACCAAGTTTGGCACCAAAACTCCTTCCGAAAAAATTTT-ATAAATCTCGAACCGCAAAAAGTGTC
389 ACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
* * * *
5543473 AAAAATCTTGACAAATAGAAATATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
454 AAAAATCATGAAAAATAGAAA-ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
5543538 CCGTTGTATGAATTTATAGGCCATAAAGATGGCATTGGCACACAAAAATATGAAGATTTGCCTAA
518 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAA
* * *
5543603 ACCAACATACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCG
583 ACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G
* * *
5543668 CCCACCTGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTA
644 CCCACCCGCC-TCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
*
5543733 GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGGAGAGGGGGACCC-AGTCGATCCCCG
708 GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCG
*
5543797 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGGATGACTTAGG
772 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGGATGACTTAGG
5543862 AATACGGAGTTCATTCCCAGTCTATGATTTGATCG
837 AATACGGAGTTCATTCCCAGTCTATGATTTGATCG
5543897 GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
1 GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
5543962 AGGCACCATCGCCGA-AGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCGG
66 AGGCACCATCGCCGAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCGG
*
5544026 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCC
131 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
5544091 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTT
196 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTT
* *
5544156 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCATAAAATCTTG
261 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
5544221 TACACTTCGTGTTTTTA-CTTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCATGTCTA
326 TACACTTCGAGTTTTTAGC-TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * * *
5544285 ACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCAAACCGCAAAAAGATTCC
390 CCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* * * * * *
5544350 AAAATCCTGAAAAATAGAGAATGAGTCGTCTTGCCACGAAACTTCACTTGAAGGCTTAAGGGACC
455 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** * *
5544415 ACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAAC
520 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
* *** * * *
5544480 CCACCTACCATATTATCGATTCACTGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCC
585 CCACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCC
* *
5544545 CGCCCGCCCCCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
646 CACCCG---CCT--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * * *
5544610 TAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGGAGAGGGGGACCC-AGTCGATCCC
706 CAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCC
*
5544674 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGGATGACTTA
770 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGGATGACTTA
5544739 GGAATACGGAGTTCATTCCCAGTCTATGATTTGATCG
835 GGAATACGGAGTTCATTCCCAGTCTATGATTTGATCG
5544776 GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
1 GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
5544841 AGGCACCATCGCCGA-AGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCGG
66 AGGCACCATCGCCGAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCGG
*
5544905 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCC
131 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
5544970 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTT
196 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTT
* * *
5545035 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTAGAAAATCCTG
261 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
5545100 TACACATCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAC
326 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** * **
5545165 CAAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAATCACAAAAAGTTTTGA
391 CAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* * *
5545230 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACTA
456 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* ** *
5545295 TTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
521 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACC
*
5545360 CACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCC
586 CACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* * *
5545425 G---CTCGTTTCATCGGTTCGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
651 GCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
* * * * * * * *
5545487 CAAGGGCTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATTGATCCTCGGCTTGTGGA
716 CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * * *
5545552 TCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGC-TAGTTTTATTGGTTGACTTAGGCATACGGA
781 TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTA-TTTCATGGGATGACTTAGGAATACGGA
* * *
5545616 GTTCATTCCCAGCCTAAGCATATGGAGTTCATTCCC
845 GTTCATTCCCAG--T---C-TAT-GATTTGA-T-CG
* * * * ** ** * ** * * * * * *
5545652 AACCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATTGAACTGAACCGAGGGTTGCGATAGCAC
1 GATCGAGGGTTACGGCAGCACA-TGCTGGGCT-CG--GGCA-TGTA-C--TGG-TGC-----CAC
* * * ** * *
5545716 ATACTATGC-TCAGGC-ATGTGCTGGTACCGTATTTTTCTTCGTCAGGGCACCTTCGTCGGAGCA
52 AT--TTTTCTTC-GTCGA-G-GC----ACC--A----TCGCCG--AGAGCA---TCATCGGAG-A
* * ** * * * * *
5545779 TCACCGGAGAACCTGATCGACGGCTTTGGGGTTCCGGCGAT--TGGGGGTCGGGGGGGTGTGCGA
96 --ACC--TG-ACC-G-GCG--GCATTGGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG-
*
5545842 CACA--ATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
151 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * * * *
5545905 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAA
216 TGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTTTGCTGCCAATAGCCATTAAA
*
5545970 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
281 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
5546035 GAATTTTTTTATCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
346 GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTC
*
5546100 CTTCCGAAAAAATTTTAATAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
411 CTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
5546165 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
476 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
5546230 TAAAAATGGCATTGGCACACAAAAATATAAAGATGTGCCTAAATCCACCTACCACCCTTTCGATC
541 TAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATC
* *
5546295 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CGC-CCTCTCATTTCGTCGGTTG
606 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCTCTCGTTTCGTCGGTTG
* * * * * * * * *
5546357 GCTTAGGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCTAGGGTTGTGGCAACAGGA
671 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * * * *
5546422 TCGCCATCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCTCTCTGGTCGGTT
736 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
** * * * * *
5546487 GAGCGCCCGCACGCTCGTTTCATGGGTTGACGTAGGCATATGGATTTCATTCCCAGTCTA
801 GAGCGCCCGCACGCTTATTTCATGGGATGACTTAGGAATACGGAGTTCATTCCCAGTCTA
5546547 AGCATATGGA
Statistics
Matches: 2334, Mismatches: 239, Indels: 119
0.87 0.09 0.04
Matches are distributed among these distances:
866 2 0.00
867 175 0.07
868 1 0.00
869 1 0.00
872 1 0.00
873 3 0.00
874 101 0.04
875 459 0.20
876 54 0.02
877 3 0.00
878 2 0.00
879 810 0.35
880 4 0.00
881 1 0.00
883 2 0.00
884 3 0.00
889 5 0.00
890 3 0.00
891 6 0.00
892 2 0.00
896 3 0.00
898 1 0.00
902 4 0.00
904 1 0.00
905 3 0.00
908 8 0.00
909 3 0.00
910 1 0.00
911 3 0.00
913 4 0.00
914 5 0.00
915 620 0.27
916 21 0.01
917 4 0.00
918 15 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
GATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTCTTCGTCG
AGGCACCATCGCCGAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTGTTCCGACGATCGG
GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTGGAGATTTTACATGTT
TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACC
CACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
GCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGGATGACTTAGGAATACGGAG
TTCATTCCCAGTCTATGATTTGATCG
Found at i:5545636 original size:26 final size:26
Alignment explanation
Indices: 5545607--5545685 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5545597 GTTGACTTAG
5545607 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
5545633 GCATATGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5545659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5545685 G
1 G
5545686 ATTGAACTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5546573 original size:25 final size:26
Alignment explanation
Indices: 5546522--5546573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5546512 GTTGACGTAG
*
5546522 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5546548 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5546573 G
1 G
5546574 ATCATACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5547007 original size:26 final size:26
Alignment explanation
Indices: 5546957--5547009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5546947 GTTGACTTAG
* *
5546957 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAATCTAA
* *
5546983 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
5547009 G
1 G
5547010 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:5548838 original size:871 final size:871
Alignment explanation
Indices: 5546983--5551303 Score: 5607
Period size: 871 Copynumber: 4.9 Consensus size: 871
5546973 CATAGTCTAA
* * * * ** *
5546983 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGCTAGCACATGCTGGG
* * * * * * *
5547048 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCACCGGAGA
66 CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
** * *
5547113 ACCTGACCGGTGGCATTAGGGTTCCA-ACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTT-CAGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
** * * * *
5547177 TTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATACCTCAGCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
5547242 CACCTCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5547307 TGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
* *
5547372 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5547437 AATTTTAAAGAATCTCGGACCGCTAAAA-TTTTGAAAATCTTGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGCTAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
5547501 TGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5547566 ATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * *
5547631 GCATCCTGTCTCTTTGGTC-GACGTAGTGCCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCCT
648 GCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCCT
* * * *
5547695 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTGGTAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGG
5547760 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCTAG-CTGAG
777 CAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGTATCCCGCCCCTCTGGC-AGACTGAG
*
5547824 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 CACCCGCAAGCTCGTTTCGTGGGTTGACTTAG
* *
5547856 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGCTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGCTAGCACATGCTGGG
* * *
5547921 CTCAGGCATGTGCTGGTCCCGTATTTTTCTTTGTCGGGGCACCATCATCGAAGCATCGCTGGAGA
66 CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
5547986 ACCTGACCGACGGCCCTT-GGGTTCAGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGG-CATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5548050 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
5548115 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5548180 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTGGCTGAATTTTTTGT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
*
5548245 GCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
5548310 TTTTAAAGAATCTCGGACCGCTAAAA-TTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGCTAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
5548374 CCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
5548439 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * * *
5548504 ATCCTGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCCCGGTCGTTTCATCGGTTGCCCTAGG
650 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCCTAGG
* * * *
5548569 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTGGTAGGATCGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGGCAG
5548634 CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCTAG-CTGAGCAC
780 CACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGTATCCCGCCCCTCTGGC-AGACTGAGCAC
*
5548698 CCGCACGCTCGTTTCGTGGGTTGACTTAG
843 CCGCAAGCTCGTTTCGTGGGTTGACTTAG
5548727 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGCTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGCTAGCACATGCTGGG
* * *
5548792 CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCAGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
5548857 ACCTGACCGACGACCCTT-GGGTTCAGGCAATCGGGGGGACCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACG-GCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5548921 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
5548986 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5549051 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT-GCCTAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTG
*
5549115 TGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5549180 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTG--ACATAGAAAACGAGTTGTCTT
454 ATTTTAAAAAATCTCGAACCGCTAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
5549243 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTAGAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
5549308 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCTTATCGATCCATAGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * * ** *
5549373 CATCCCATCTTTCTGGCCGGCATAGTGCCCACCCGCCTGTCCGCCCACTCGTTTCGTCGGTAGGC
649 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG-C---CCGCCCGGTCGTTTCGTCGGTTGGC
* *
5549438 TTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGA-----A-GGT--T--G-T
710 CTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGGTAGTAGGAT
* ** * * * *
5549491 -GGCAGCACGCAGAGAGGGACCCGGTCGATCCCTGGGTTGCGCATCCCGCCCCTC-GACCGACTG
774 CGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGTATCCCGCCCCTCTGGCAGACTG
* * * *
5549554 AGCGCCCGCAAGCTCGTTCCATGTGTTGACTTAG
838 AGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAG
*
5549588 GCATACGGAGTTCATTCCCAGTCTAACCATACAGTGTTTAATTCCAACCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA-A--G----------A--T----T-GGACCAGAT
* * ** * * *
5549653 CAAGGGTTACGAAAGCACATACTGGGCTC-GGCCATGTGCTGGT---GC---TTTCTTCGTTGGG
40 CGAGGGTTGCGCTAGCACATGCTGGGCTCAGG-CATGTGCTGGTCCCGCATTTTTCTTTGTCGGG
* ** *
5549711 GCACCATCGTCGGAGCATCG-TCGGAGAACCTGACCGGCGATATTGGGGTTCCGACGATCGGGGG
104 GCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGG
* * * *
5549775 GGCCGGGGGGTGTGCCCACATGACGTGCGCTGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT
168 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
5549840 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
5549905 ACCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCA-AAAACCCTTGTAC
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-TCTTGTAC
* * * * **
5549969 ACTCCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAAACAAGGATCAAGTCTAAAAA
362 ACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
5550033 GTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAGAAAATCTCGAACCG-TAAAAAGTTTCCAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCT-AAAAGTTTCGAAA
*
5550097 ATCGTGAAAAATAGAAAAC-AGGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
490 ATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
5550161 TGTATGAATTTACAAGCCAAAAAAATGGAATTTGCACATAGAAATATGAAGATGTCCCTAAACCC
554 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * * *
5550226 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCAGCCCG
619 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG
* ** * * * *
5550291 CCCGTCCGCCCATTTCATCGGTTGGCCTAGGTATACGGAGTTCATTCCCAGTCTAAGATTAGACC
684 CCCGCCCGGTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
5550356 AGA-CTGAGGGTTGCGGTAGCAGTATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCGACTTA
749 AGATC-GAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTG
* * * *
5550420 CGTATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAAGCTCGTTTTGTGGGTTGACTTAA
813 CGTATCCCGCCCCTCTGGCAGACTGAGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAG
*
5550479 GCATACGGAGTTCATTCCCAATCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-TG--G---A----C---C--AGAT----------
* * * *
5550544 CGAGGGTTGCGGC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGG
40 CGAGGGTTGC-GCTAGCACATGCTGGGCTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCGGG
** *
5550608 GCACCATCGTCGGAGCATCATTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
104 GCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGG
*
5550673 GCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
5550738 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAG
234 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5550803 CCAGTAGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
5550868 TTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
5550933 TTGGGGCCAAAACACCTTCCGAAACAATTTTAAAAAATCCCGAACCGC-AAATAGTTTCGAAAAT
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCTAAA-AGTTTCGAAAAT
* * * * *
5550997 CATGAAAAGTAGAAAAGGA-TCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAAGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** * *
5551061 ATGAATTTACAAGCCA-AAAGAATGGCTTTGGCATGCAGAAATATGAAGATATGCCTAAACCTAC
557 ATGAATTTACAAGCCATAAA-AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
5551125 CTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCG
621 CTACCACCCTATCGATCCACAG-CTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCCG
* * * *
5551188 CCCGCCCGCCTGTTCGTTTCGTCGATTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCA
684 CCCGCCCG---G-TCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * *
5551253 GACCAGATCGAGTGTTGTGGCAGCATGATCGACAGCACGCAGAGGGGGACC
745 GACCAGATCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACC
5551304 GGCGATATTG
Statistics
Matches: 3068, Mismatches: 271, Indels: 190
0.87 0.08 0.05
Matches are distributed among these distances:
860 1 0.00
861 56 0.02
862 47 0.02
863 2 0.00
864 1 0.00
866 2 0.00
867 3 0.00
868 6 0.00
869 2 0.00
870 169 0.06
871 941 0.31
872 212 0.07
873 145 0.05
874 62 0.02
876 1 0.00
879 62 0.02
880 7 0.00
881 343 0.11
882 21 0.01
883 162 0.05
884 3 0.00
885 5 0.00
886 4 0.00
887 43 0.01
889 1 0.00
890 18 0.01
891 118 0.04
892 3 0.00
894 2 0.00
896 5 0.00
897 439 0.14
898 96 0.03
899 1 0.00
901 84 0.03
902 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGCTAGCACATGCTGGG
CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCTAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCCTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGTATCCCGCCCCTCTGGCAGACTGAGCACCCG
CAAGCTCGTTTCGTGGGTTGACTTAG
Found at i:5550516 original size:26 final size:26
Alignment explanation
Indices: 5550476--5550531 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
5550466 TGGGTTGACT
*
5550476 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
* *
5550502 TAAGCATATGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
5550528 TAAG
1 TAAG
5550532 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:5550785 original size:897 final size:892
Alignment explanation
Indices: 5548728--5551303 Score: 3474
Period size: 897 Copynumber: 2.9 Consensus size: 892
5548718 TTGACTTAGG
* * *
5548728 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGC-GCTAGCACATGCTGGG
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC-AGCACATGCTGGG
* * * * *
5548792 CTCAGGCATGTGCTGGTCCCGCATTTTTCTTTGTCAGGGCACCATCATCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
5548857 ACCTGACCGACGACCCTT-GGGTTCAGGCAATCGGGGGGACCGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5548921 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
5548986 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAAT
* *
5549051 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGCCT-AAATTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAG-CTGAATTTTTTTG
*
5549115 TGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
5549180 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTG--ACATAGAAAAC-GAGT-TGTC
452 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAG-GTCT-TC
* * *
5549241 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTAGAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGG
* *** * * **
5549306 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCTTATCGATCCATAGCTTG
580 -ATTTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
5549371 CGCATCCCATCTTTCTGGCCGGCATAGTGCCCA-CCCGCCTGTCCGCCCACTCGTTTCGTCGGTA
644 CGCATCCCATCTCTCTGGCC-GCGTAGTG-CCAGCCCGCCCGTCCGCCCA----TTTCGTCGGTT
* *
5549435 GGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTT--GT----G--
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGGGTAGCAGTA
* ** ** *
5549492 --GCAGCACGCAGAGAGGGACCCGGTCGATCCCTGGGTTGCGCATCCCGCCCCTCGACCGACTGA
768 TCGCAGCACGCAGAGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCCTCGACCGACTGA
* * *
5549555 GCGCCCGCAAGCTCGTTCCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAC
833 GCGCCCGCAAGCTCGTTCCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAC
* * ** * * ** *
5549615 CATACAGTGTTTAATT-CCAACCTAAGATCGGACCAGACCAAGGGTTACGAAAGCACATACTGGG
1 CATACAGAG-TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5549679 CTCGGCCATGTGCTGGT--GC---TTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAA
65 CTCGGGCATGTGCTGGTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * *
5549739 CCTGACCGGCGATATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCCCACATGACGTGCG
130 CCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
5549804 CTGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
5549869 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGG
* * **
5549934 GGACACTTTATTCAAATGGTCA-AAAACCCTTGTACACTCCGAGTATTTAGCTGAATTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAA-TCTTGTACACTTTGAGT-TTTAGCTGAATTTTTTTGT
* * ** *
5549998 GCATGCCAA-AAAAAAACAAGGATCAAGTCTAAAAAGTTTGGGGCAAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
5550062 TTTTAGAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACAGGTCTTCTTG
453 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAGGTCTTCTTG
5550127 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGAAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGG-AT
* *
5550192 TTGCACATAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
582 TTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5550257 ATCCCATCTCTCTGGCCAGCGTAGTGCCAGCCCGCCCGTCCGCCCATTTCATCGGTTGGCCTAGG
647 ATCCCATCTCTCTGGCC-GCGTAGTGCCAGCCCGCCCGTCCGCCCATTTCGTCGGTTGGCTTAGG
* *
5550322 TATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGTAGCAGTATCAGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-GGTAGCAGTATC-GCAG
* * *
5550387 CACGCAAAGGGGGACCCGACCGATCCC-GACTTACGTATCCCGCCCCTCTGGCCGACTGAGCGCC
774 CACGCAGAGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCCTC-GACCGACTGAGCGCC
*** *
5550451 CGCAAGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAG
838 CGCAAGCTCGTTCCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAC
* *
5550506 CATA-TGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 CATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5550570 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCATTGGAGA
65 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
5550635 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
129 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5550700 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
5550765 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-AGCCAGTAGCCACTAAAGTGTTTGAAAT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA-CCAGTAGCCACTAAAGTGTCTGAAAT
* *
5550829 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAGTTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTAGCTGAATTTTTTTG
* *
5550894 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAACA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
5550959 ATTTTAAAAAATCCCGAACCGCAAATAGTTTCGAAAATCATGAAAAGTAG-AAA-AGGATCGTCT
452 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAGG-TCTTCT
* * * *
5551022 TGCCATGAAACTTCACGTGAAGGTTTAAAGGACCATTGTATGAATTTACAAGCCAAAAGAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGA
* * * *
5551087 TTTG-GCATGCAGAAATATGAAGATATGCCTAAACCTACCTACCACCCTATCGATCCACGACTTG
581 TTTGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
5551151 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGTTCGTTTCGTCGATTG
644 CGCATCCCATCTCTCTGGCCG-CGTAGTGCCAGCCCGCCCGTCCGCC----CATTTCGTCGGTTG
* * * *
5551216 GCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGTGTTGTGGCAGCA-T
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG-GGTAGCAGT
5551279 GATCGACAGCACGCAGAGGGGGACC
767 -ATCG-CAGCACGCAGAGGGGGACC
5551304 GGCGATATTG
Statistics
Matches: 1480, Mismatches: 162, Indels: 80
0.86 0.09 0.05
Matches are distributed among these distances:
879 58 0.04
880 6 0.00
881 338 0.23
882 27 0.02
883 171 0.12
884 4 0.00
886 1 0.00
887 60 0.04
888 5 0.00
890 23 0.02
891 150 0.10
894 2 0.00
895 3 0.00
896 9 0.01
897 441 0.30
898 95 0.06
900 3 0.00
901 84 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (892 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAGGTCTTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGATTTGC
ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CATCTCTCTGGCCGCGTAGTGCCAGCCCGCCCGTCCGCCCATTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGGGTAGCAGTATCGCAGCACGCAG
AGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCCTCGACCGACTGAGCGCCCGCAAGCT
CGTTCCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAC
Found at i:5552080 original size:26 final size:26
Alignment explanation
Indices: 5552044--5552094 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5552034 GTTGACTTAG
*
5552044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5552070 GCATACGGAGTTCATTCACAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
5552095 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5552964 original size:26 final size:26
Alignment explanation
Indices: 5552935--5552984 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5552925 GTTGACTTAG
5552935 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
*
5552961 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
5552985 AAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:5553866 original size:26 final size:26
Alignment explanation
Indices: 5553830--5553882 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5553820 GTTGACTTAG
5553830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5553856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5553882 G
1 G
5553883 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5554921 original size:900 final size:900
Alignment explanation
Indices: 5551300--5573731 Score: 19273
Period size: 900 Copynumber: 24.7 Consensus size: 900
5551290 CGCAGAGGGG
** * * *
5551300 GACCGGCGATATTGGGGTTCCGACGATCGGGGTGGCTGGGGGGGTGTGCGCACATGATGTACGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
5551365 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAATCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
5551430 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAACTAAAGTCTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5551495 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGC-
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** *
5551559 TAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACACCTTCCGAAAAAATT
261 T-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
5551624 GTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAATCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5551689 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5551754 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCACAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
5551819 CCCGTCTCTCTGGGCGACGTAGTGCCCGCCCACCCGCCCACACGTTCGTTTCATCGGTTGGCTTA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTA
* * * * *
5551884 GGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGGCAGTAGGATCGAC
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * * * *
5551949 AGCACACAGAAGGGGTCCCGGTCGAT-CCCAAGCTTGCGCATCCCACCCCTCTGGCTGACTGAGC
646 AGCACGCAGAGGGGGACCCGATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
5552013 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * **
5552078 AGTTCATTCACAGTCTATGATCAGACCAGACCGATGGTTGTGGCAGCACATGCTGGGCTAAGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
5552143 TGTGCTGGTGTCACTTTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCG-CTGGAGAACCT
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCT
* * * *
5552204 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGTGCAAATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
5552269 GGGTGCTGGTACTTGGCGCTTATATTGG---CC---CCCTCATCAAACCTCGAGAACTCACACTC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5552328 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5552393 ACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGGATTTTTTGTATG-
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTGC
* * * *
5552457 -TGCCAA-AAAAATA-TAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** ** * * *
5552519 TTAAAAAATCTCGAATAGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5552584 ATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
5552649 GCACACAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGTAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** * * * * ** **
5552714 CCCATCTCTATCACCGTCATACTACCCGCCCGCCCATCCGCTCGTTTCGTCCATTGGCTTAGGCA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** * *
5552779 TACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACGGAGGGTTGCTACAGCAGGATCGGCATC
585 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGGCAGC
** * ** * * * *
5552843 ACATAGAGGGGTACCCGGCCGATCCCCGGCTCGTC-CATCCCGCCCCTCTAGCCGGCTGAACGCC
649 ACGCAGAGGGGGACCCGATCGATCCCCGACTTG-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
5552907 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATATGGAGT
713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
5552972 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGT
778 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
** * * ** **
5553037 GCTGGTGCCATATTTTTCTTTGCCAAGGCACCATCGTCGGAGCATCACCGGAGAACCT
843 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* ** * * *
5553095 GACCGGCGACATTAAGGTTCCGACGATCAGGGGGG-CTGGGGGGTGGGCGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
5553159 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAATCTCGAGAACTCACACTC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5553224 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTCTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5553289 ACATTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC-
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * *
5553353 TAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACGCCTTCTGAAAAAATT
261 T-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** * *
5553418 GTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCATCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5553483 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAGGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
5553548 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
5553613 CCCGTCTCTCTGGCCGACGTAGT----GCACGCCCACCCGTTCGTTTCATCGGTTGGCTTAGGCA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
5553674 TATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCTGCAGTAGGATCGGTAGCA
585 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCA
* * ** * * * *
5553739 CGCAGAAGGGGTCCCGGCCGATCCCAGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCG
650 CGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
5553804 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
715 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
5553869 ATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGC
780 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
5553934 TGGTACCACTTTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCT
845 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * *
5553990 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCAAATGATGTCCGA
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGA
* * * *
5554055 TGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAAGTCACATC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5554120 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTCTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5554185 GACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGATAAATTTTTTTGTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** *
5554250 -TAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACGCCTTCC-AAAAAAT
260 AT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* **
5554313 TTGTAAAAAATCCCAAACCGCAAAAA-TTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
324 TT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
5554377 CCATGAAACTTGACGTGAAGGCTTATGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
388 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
5554442 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCGC
453 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
5554507 ATTCCGTCTCTCTGGCTGACGTAGTGCTCGCCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGG
518 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** *** *
5554572 CATACAGAGTTCATTCCCAGTCTAAGATTGGATTAGACCGAGGGTTGCAATAGTAGGATCGACAG
583 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * * *
5554637 CATGCAGAGGGGGACCCGATCGATCCCCGACATACGCATGCCGCCCCTCTGACCGACTGAGCGCC
648 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * **
5554702 CGCACGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTCAGCATACAAAGT
713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
5554767 TCATTCCCAGTCTAAGTTCGGACCGGACCGAGGGTTGTGGCAGCACATACTGGGCTTGGGCATGT
778 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
5554832 GCTGGTGCTG-AGTTTTTCTTC-TCCGGGTCACCATCATCAGAGCATCGTCGGAGAACCT
843 GCTGGTGCCGCA-TTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * ** *
5554890 AACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGTC-GGGGGGTGTGCGCACATGATGTTTGGT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
5554953 GGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
5555018 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5555082 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * ** * *
5555147 TGGCAA-AAAAATACAAGGATGACATCTACCAAGTTTGGGGTGAAAACACCTTCCGAAAAAATTG
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** *
5555211 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAATCGTCTTGCCA
326 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5555276 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCGATAAAAATGGCATTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
5555341 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGTACC
456 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
5555406 CCATCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
521 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * *** * * * ** *
5555467 ACGGAGTTCATTCATAGTCTAAGATCGGATCAGATTTACGGTTGTGGTAACAGGATCAGCAGCAC
586 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
* * * * * *
5555532 ACAGAGTGTGACCCGGTCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCAGGCTGAGCGCCCGC
651 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
5555596 ACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
716 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
5555661 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCT
781 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *** * * * ** *
5555726 GTTGCTATATTTTTCTTCGTCGGGTCACCATCGCCGGAGCTTCACCGGAGAACTT
846 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * ** *
5555781 GACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTTTGGT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
5555845 GGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5555910 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCATTAGCCATTAAAGTG-CTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5555974 ACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGC-
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * *
5556038 TAGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGTGAAAACACCTTCCAAAAAAATT
261 T-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * ** * * *
5556103 GTAAAAAATCCCAAACCGCAAAAACTTTCAAAAATTGTGAAAAATAAAAAATGAGTCGTCTTGCT
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5556168 ATGAAACTTCA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
5556232 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** *
5556297 CCCATCTCTCTGGCCGGTGTAGTGCCCGCCTGCCTGCGCGCCCGCTCGTTTCGTCGGTTGGCTTA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
5556362 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGT
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * * *
5556427 AGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCTTTTGGCCAGCTGAGCG
646 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
5556491 CCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCGTACAGA
711 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
5556556 GTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAG--CA-------------CA-
776 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
5556605 -TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCATTGGAGCATC-ACTGGAGAACCT
841 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCT
* **
5556664 GACCGGCGGCATAGGGGTTCCGACGATC-GGGGGTTC-GGGGGGTGTGCGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
5556727 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
5556792 TCTTAAAGAACATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTATCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
5556857 AAACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTACA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
5556922 AGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA-TGCCTTCCGAAAAAATT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATT
* * * *
5556985 TTCAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
5557050 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5557115 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCTT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** * * * *
5557180 CCCATCTTTATGGGTGGCGTAATGCCCGCCCTCCCGTCTGCCCGCTCGTTTTGTCGGTTGGCTTA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-GCC--C-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
5557245 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGAGTTGTGTCTGTAGGATCGG
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGG
* * * * * * *
5557309 CAGCACGCAGAGTGGGACCCTATCGATCCCCGGCTTGGGCATCCGGCCCCTCTAGCCTGCTGAGC
645 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
5557374 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAG-AT-C--
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
5557435 ---T-A-----A--C------CGGACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
5557478 TGTGCTGGTGTCGCATTTTTCTTTGTCGGGGTACCATTGCCGGAGAATCG-CTAGAGAACCT
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCT
* *
5557539 GACCGGCGGCGTTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACTTGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
5557602 GGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCGCTCATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
5557667 CCCTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * * *
5557732 ACACTTTTTTCAAATGGTCACAAAATCTTGTCCCCTTTGGGTTTTTTGCTGAATTGTTTTATGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * * *
5557797 CACCAACAAAAATACGAGGATCACGTATACCAAATTTGGGGTGC-AAACTCCTTCCGAAAAAATG
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATT
* * * * *
5557861 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCATCCTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5557926 ATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCAATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5557991 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
5558056 CCCGTCTTTCTGGCCGACATTGTGCCTGCCCGTCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** * * *
5558121 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAAGGTTAAGACAGCAGGATCGAC
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * *
5558186 AGCACACAGAGGGGGACCC-AGTCGATCCTC-AGGTTACGCATGCTGCCCCTCTGGCCGGCTGAG
646 AGCACGCAGAGGGGGACCCGA-TCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
5558249 CGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
709 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--C--A
* * * ** ** ** * * **
5558314 TCGGACTGAGGGTT-ACTGCAGCAGGATCGGCAGCGCGTAGAGGGAGACCCAGCCGATCCCCGGC
770 T---AC-G-GAGTTCA-TTC-CCA-G-TC-TAAGATCG--GACCG-GACCGAG--GGT-TGCGGC
* ** * * ** * * * *** *
5558378 TTGTGCATCCCGCCCCTCTGGCA-G-GCTGAGCGCC-CGTACGCTCGTTTCGT-GGGTTG-ACTT
819 -AGCACATGCTG-GGCTCGGGCATGTGCTG-GTGCCGCAT-TTTTC--TTCGTCGGG--GCAC-C
* * * ** *
5558438 AGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTT
875 A-TCGT-CGGAG--CA-T-C--GTCGGAG-A-AC----CT
* * * * ** * *** * ** *
5558478 CATTCCAGTCTAAGCATACGGACTTCATTCCCAGTCTAAGATCGAACCGGACC-CAGGGTTACAG
1 GA--CC-GGC--GGCAT-TGG----GGTT-CC-G---ACGATCG-GGGGGGCCGGGGGGGT---G
* * * * * * * * * * *
5558542 T-AGCAAATGCTG-GCTCA-GGCATGTGCTGGTGC--CGCCTTTTTCTTCGTCGGGGCACC-ATC
47 TGCGCACATGATGTGC-GATGG---GTGCTGGTACTTGGCCCTTAT-AT--T--GGCCCCCTATC
** * * * ** * * * * ** * * *
5558601 GCCGGAGC-ATCAC-CGAAGAACCTGATCGGA-GGCATTAAGGTTTCGGTGATCGGGGGGCTGGG
103 -CCTCATCAAAC-CTCG-AGAA-CTCA-C--ACCCCCTTAAAG----AG-CAT--TTGAGAT--T
** ** * * * * ** * *
5558663 GGAGGGGGTGTGCTGACATGATGTGCGA-T-GGGTG-CTGGTACAT--GG-CCCTTATATTCGCC
152 TTA-CAGGTTTGCTGCCA-G-T-AGCCATTAAAGTGTCT-G-AAATGGGGACACTT-T-TT----
* ** ** * ** * ** *** ***
5558722 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
205 TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TT
** * * * * ** * *
5558787 TGCTGCCAGTAGCC-ATTAAATTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA
255 TG-TG-CA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA
**** ** ** * * * **
5558847 TCTTGTACACTT-CG-AGTTTTTAGTTAAATATTTTTACGCATGCCAACAAAAA--TACAAGGAT
308 -C---T-C-CTTCCGAAAAAATT--TTAAA-A-AATCCCG-A-ACC-GCAAAAAGTTTCAAAAAT
** * **** * ** * ** * * ** ** **
5558908 CATGTCTACCAAGTTTGGGGCCAAAACTTCTT-CCGAAAAAAGTTTA--AAAAATCTTGAACCG-
360 CATG---A--AAAATAGAAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTT-AAGGGA
* ** * ** *** * * * **
5558969 CAAAAAGTTTCGAAAAT-CATGAAAAATAGAAAATGAGTCGTCTTGCCATG-A-AACT-TCGCGT
418 C-CATTGTAT-GAATTTACA--AGCCATA-AAAATG-G-C--ATTGGCATGCAGAAATAT-G-AA
* * ** ** *** ** * * * *
5559030 GAAG-GCTTAAGGGA-CCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTG-GCATGCAG-A
472 GATGTGCCTAA---ACCCA-CCTACCACCCTATC--G--AT--CCACGGC-TTGCGCATCCCGTC
** * *** *** * ** **
5559090 AATAT-AAAGA--T-GTGCCTAAACCG-AC-CTAGCATC-TTATCGATC-CATGGCTT--GCATA
526 TCTCTGGCCGACGTAGTGCC-CGCCCGCCCGCCCGC-TCGTT-TCG-TCGGTTGGCTTAGGCATA
** * * * ** * * * * * **
5559145 TC-CCGTCTCTTTGGCC-GGCGTAATGCCCGCATGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
587 -CGGAGT-TCATT-CCCAGTC-TAA-GATCGGA--CCAGACCG---A--GGGTT-G-CGG-CAG-
* *** * * **
5559208 TTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAGGGCAGCAGGA-
636 -TAGG-AT-CGGCAG--CA--CGCAG----AG-GGGGACCCGATCGA----T----C--CCCGAC
* ** * * * * *
5559271 TCGACAGCATGCAGAGGGGAACCCGATC-GATCCTCGGCT-TGCGCATCCTGC-CCCTC-TTGCC
679 TTG-C-GCAT-C----CCG--CCC-CTCTG--GC-CGGCTGAGCGC--CC-GCACGCTCGTT--T
* * * * * * ***** * *
5559332 CGCTGAG-TGCCTGCACGC-T-C-G-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
726 CG-TGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAG
* *
5559392 TCTAAGCATACAGAGTTCTTTCAAAGCTTAAGATCGGACGGGACCGATGGTTGCGGCAGCATATG
788 --T---C-TA-AGA------TC---G-----GA-C---C-GGACCGAGGGTTGCGGCAGCACATG
* * ** * *
5559457 CTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCAT-GACCGGAGCATCGT
827 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGT
5559521 CGGAGAACCT
891 CGGAGAACCT
* * * * * * * * * *
5559531 GATCGACGGCGTTGGGGTTCCGGCGGTC-GGGGGGCCGGGGGGGAGTGTGCATATGATGGGCAAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
5559595 GGGTGTTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTAATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
5559660 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-CATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5559724 ACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAATTTTTAGCTGAATTGTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* **
5559789 TGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTTAAAACTCCTTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
5559854 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCA
326 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
5559919 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGC
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
5559984 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCACATC
456 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ***
5560049 CCATCTCTCTGGCCGGTATAGTGCCCGCCTAC-CCGTCAGCCCGCTCGTTTCGTCGGTTGGCTTA
521 CCGTCTCTCTGGCCGACGTAGTGCCCGCC--CGCC--C-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
5560113 GGCATAC-AATGTTCATT-CCAGTCTAAGATTGGACCAGACCGAGTGTTGCAGTAGTAGGATCGA
581 GGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGG
* * * * * * *
5560176 TAGCACGTAGAGGGTGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCTGCTGAGC
645 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * * * *
5560241 GCCCGCCCACTCGTTTCTTGGGTTCACTTAGGCATACAGAGTTCTTTCCCAATCTAAGCATATGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * ** * * *
5560306 AGTTCATTCCCAGTCTAAGATAGGACTGGACCGAGGGTTACGATAGCAGGAT-C-GACAGCACGC
775 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CATGCTG--GGCTCG-
* * * * * * * * * * * *
5560369 AG-AGGGGAACTCGGTCGATCCTCAGCTTGTGCATCCCGCCCCTC-TGGCCCGCTGAGCGCCCGC
836 GGCATGTG--CT-GGT-G--CCGCA--TTTTTC-T-TCG----TCGGGGCAC-C--ATCG-TCGG
**
5560432 ACGC-TCGTTTCGTG-G--GTT
883 A-GCATCG--TCG-GAGAACCT
*** * * *** * *** **** ** *** * * *
5560450 GA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCT-TTCACAGTTCAAGATC
1 GACCGGCGGCAT-TGGGGTTC-CGACGA-TCGGGGGGGCCGGGGGGGTGTGCGCA---CATGAT-
* *** ** * * * * * * * * **
5560513 G-GACCA-GACCGAGGGT--TGTGGCAGCATATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
59 GTG-CGATGGGTGCTGGTACT-TGGC-CCTTAT-ATTGGC-C---C----CCT-ATCCCTCATCA
** * * ** ** * *** * ** ** * * ** *
5560574 TTCTTCGCTG-AGGCAC-CATCATCGGAGCATCATCGGAGAACCTAACCGACGGCATTGGGGTTC
111 AACCTCG-AGAACTCACACCCCCTTAAAG-AGCATTTGAG-ATTTTA-C-A-GG-TTTGCTG-CC
* * * * * ** * * * * ** * ***
5560637 TG-A-CGATCGAAGGGGTC---AGGGGGGAGCGCACATGATGTGCGACGGGT-GC-TGGTACTTG
168 AGTAGCCAT-TAAAGTGTCTGAAATGGGGA---CAC-T-TTTTTCAAATGGTCACAAAAT-CTTG
* * * * *** *** ** ** * * * * * * *
5560695 -GC-CCT-GA--TATTGGC-CCCTATCCCTCAT-CAAACC-TCGAGAACT-C-A-CACCCCCT-T
226 TACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCT
* *** **** * ** ** * *** ***
5560748 A-AAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAATGTGTCTGAAATGGGGACA
289 ACCA-AG--TTTG-G---GGCCAAAACTCCTTCC-G-A---AAAAAT-TTTAAAAAATCCCGA-A
****** * * * ** ** * * ** *
5560812 CTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG-CATG
340 C-CGCAAAAAGTT-TCA-AAAATCATG-AAAAAT--AG---AAAAC-G-AGTCGTCT-TGCCATG
* * * ** * * **
5560876 CCAACAAAAATAAAAGGATCACGTCTAACAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
393 ------AAACT-------TCACG--TGA-AGGCTTAAGGG-----AC-CATT--GTATGAA-TTT
* ** **** * * * * * ****
5560940 AAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATG-AAAAATA-AAAAATGAGTCGTCTTGC
433 --ACAA----G--CC-ATAAAAA-TGGC-ATTGGCATGCAGAAATATGAAGATGTG-CCTAAACC
* * * * * * * *** ** * * * *** *
5561002 CA-TTA-AAACTTCA-CG-T-GAAGGCTTAAGGGACCATTATATGAATTTACAGGCCATAAAAAA
486 CACCTACCACCCT-ATCGATCCACGGCTT--GCG--CA-T-CCCGTCTCT-CTGGCC-GACGTAG
** * * ** ** ** * * ** ** ** *
5561062 TG---GCATTG---GCACG-TAGAAATATTAAGATGTGCCTAAACCCACCTA--CCA--CCCTAT
542 TGCCCGC-CCGCCCGCCCGCTCG-TTTCGTCGGTTG-GCTTAGGCATACGGAGTTCATTCCC-A-
* * * * * *** * ** * * * ** **
5561116 CGATCCATGACTTGTGCATCCCGTCTCTCTGG--CCGGC-GTAGTGCCCGCCCGCCCGC-CCGCC
602 -G-TCTAAGA-TCG-G-A-CCAGAC-CGAGGGTTGCGGCAGTAG-GATCGGCAGCACGCAGAGGG
* * ** * **
5561177 CG-CCC-ATTCGTTTCGTCG-GTTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGATCAGAC
659 GGACCCGA-TCG-ATCCCCGACTT-GC----GCAT-C------C-CGCCC-CTCT--G----G-C
* * * * ** * * ** ** *** *
5561239 TGGACTGAGGGTTGCGGCAC-CAGGATT-GATAGCATG-CAGAGGGGGACCCG-G-TCGA-TCCC
701 CGG-CTGAGCG--CCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATA-CGGAGTTC-ATTCCC
* * ** * * ** ** * * ** * *** *
5561298 CGGCTTGGGCATCCTGCCTCTC-TGGCCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
760 AGTC-TAAGCATACGGAGT-TCATTCCCAGTCT-A-AGATCGGA--C-CGGACCGAGGGTTG-C-
* ** * *
5561361 TAGGCATAGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCGTAGTCTAAGATCCGACCGG
816 --GGC--AGCA---CA-T----G-CTGGGC-T-CGG-G--CA-T-GT-G-CT--GGT--G-CCGC
*** ** * * **
5561426 ACCGATGGTT-G-CGGCAGCA-CATGCTGGGCTCGG-GCAT-GTGCTGGTGCCATATTT
854 A-TTTTTCTTCGTCGG-GGCACCAT-C---G-TCGGAGCATCGT-C-GGAG--A-ACCT
** * ***** * * *
5561480 TTCTTCGTCGGGGCACCATCG--CCAGA-GCATCGTCGGAGAACCAGACCAGCGGCATTGGG-GT
1 GAC--CG--GCGGCATTGGGGTTCC-GACG-ATCG--GG-G----GGGCC-G-GG---GGGGTGT
* ** * ** * * ** **
5561541 TC-CGACGATCGGGGGGGCCAGGGGGGGTGTGCCCACATGATGAGTGATGAGTGCTGCTACTTGG
48 GCGC-AC-AT--GATGTG-C---GATGG-GTG----C-TGGT-ACT--TG-GCCCTTATA-TTGG
5561605 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA-A-CCCCTTAAAGAGCATTTG
94 -CC----------CCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
5561668 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATT
147 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
5561733 GTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGACTTTTTTTATGCATGCCAACAAAAATAAA
212 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
5561798 AGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
277 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
5561863 GCAAAAA-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATTAAAACTTCACGTGA
342 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGA
* *** *
5561927 AGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAATGGCATTGGCACATAGAAATATT
406 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATG
* *
5561992 AAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCCCGTCTCTCTGGTC
470 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
5562057 GACGTAGT--------GCCCGCCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
535 GACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** ** * ** * * *
5562114 CAGCCTAAGATCAAACTGGACCAAGGGTT-ATGAAGCTAGGATCAGCAGCACGCAGAAGGGGACC
600 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-TAGGATCGGCAGCACGCAGAGGGGGACC
** * * * ** * *
5562178 CGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCCGGCCGGCTGAGCGCCCATACGCTCCTTTCAT
664 CGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * * *
5562243 GGGTTGACTTTGGAATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAG
729 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * **
5562308 ATCGGACCATACCAAGGGTTGCGGCAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCATATTTT
794 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
5562373 TCTTCGTCGGGGCACCATTGTCGGAGTATCGTCAGAGAACCT
859 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
** * * * *
5562415 GACCGTTGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAGGTGGTGTGTGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
5562479 GGGTGGTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGA-AACTCAGACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5562543 CCTTAAAGAGGATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5562608 ACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * **
5562673 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTTTTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** * **
5562738 TAAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCA
326 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
5562803 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGTCTTTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
5562868 CATGCAGAAATATGAAGATGTACCTAAACCCACCTACCAGCTTATCGATCCACGGCTTGCGCATC
456 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
5562933 CCGTCTCTCTGGCTGGCATAGTGCCTGCCTGCCTGCCAGCCCGCTCGTTTCAGT-GGTTGGCTTA
521 CCGTCTCTCTGGCCGACGTAGTG-C--CC-GCCCGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTA
* * ** * * ** * *
5562997 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAACAAGATCGGT
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
** * * *
5563062 AGCACGCAGAGGGGG-CCCGGCCGATTCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCG
646 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
5563126 CCCGCACGCTCATTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGA
711 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * * *
5563191 GTTCATTACCAGTCTAAGATCGGACCATACCAAGGGTTGCGGCAGCACATGCTGTGCCCGAGCAT
776 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** * * *
5563256 GTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGTATCGTCAGAGAACCT
841 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * *
5563316 GACCGGCGACACTGGGGTTCC-AGCGATC-GGGGGGCCGAGGGGGTGTGTGCACATGATGTGCAA
1 GACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * * * * *
5563379 TGGGTGGTAGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAATCCTCGAGAACTCAAACT
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
5563444 CCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
5563509 GACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
5563574 ATGCCAA-AAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAAAAAAT
260 ATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
5563638 TTTAAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
324 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
5563703 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
389 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
5563768 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCT
454 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * * * *
5563833 TTTCGTCTCTCTGGTCGACGTATTGCCTGCCCGCCCGCCCCCTCGTTTCGTCAGTTGGGTTAGAC
519 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *
5563898 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCTCACCGAGGGTTGTGGCAGCAGGATCGGTAGC
584 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * *
5563963 ACGTAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCC
649 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
5564028 GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--
714 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
5564082 -A-T--C-G-----GATC--A---GACCGAGGGTTGCGCCAGTACATGCTGGGCTCGAGCATATA
779 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * **
5564132 CTGGTGCCGCATTTTTCTCCATCGGGGCACCATCGTCGAAGCACCACCGGAGAACCT
844 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * *
5564189 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCTGGGGGTGTGTGCGCACATGATGTGTGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
5564253 GGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
5564318 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAGTAGCCAATAAAGTGTGTGAAATGAGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5564383 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
5564448 TGCCAACAAAAATACAAGGATCAGGTTTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** ** * *
5564513 TAAAAAATCTCGAATCGCAAAAAGTTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTTTTGCC
326 TAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5564578 ATGAAAATTCATGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
5564643 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * * * *
5564708 TTCGTCTCTCTGGTCGACGTATTGCCTGCCCGCCCGCCCCCTCGTTTCGTCAGTTGGGTTAGACA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * *
5564773 TACGGAGTTCATTCCCAGTCTAAGATCGGACCTCACCGAGGGTTGTGGCAGCAGGATCGGTAGCA
585 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCA
* * * *
5564838 CGTAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
650 CGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
5564903 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG-AT-C--AG---
715 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
5564961 ------AG-C----A---GACC--A---AGGATTGTGGTAGCATATGCTGGGCTCGAGCATGTTC
780 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * ** *
5565007 TGGTGCCGTATTTTTCTTCACCGGGGCACAATCACCGGAGCATCGTCGAAGAACCT
845 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * *
5565063 GACCGACTGCATTAGGGTTTCGACAATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
5565127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5565192 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5565257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
5565322 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGCTTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
5565387 T-AAAAATCTCC-AACCG-AAAAAGTTT-AGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGC
326 TAAAAAATC-CCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
5565448 CACGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
389 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5565513 GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCA
454 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
5565578 TCCCGTCTCTCTAGCTGGCGTAGT----GCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGC
519 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** *** * * * *
5565639 ATACGGAGTTCATTTCCAGTGTAAGATCAAATTGGACTGAGGGTTGTGACAGCAGGATCGGCAGC
584 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * *
5565704 ACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGTGCTC
649 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
5565769 GCACACTTGTTT-GTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--
714 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
5565827 -A----C---C----A---GACC--A---AGGGTTACGACAGCACATGCTGGGCTTGGGCATGTG
779 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * **
5565872 CTGGTGCCGCATTTTTCTTTG-CAGGGCACCACCGCCGGAGCATCACCGGAGAACCT
844 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * *
5565928 GACCGACGGCGTTGGGGTTCCTG-CGAT---------CGAGGGGGTGTGCGCACATGATGTGCGA
1 GACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
** * *
5565983 TGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
5566048 CCCATAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
5566113 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GGTAGAATTTTTTTGTG
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTG
* * *
5566177 CATGCCAAAAAAAATACAAGGATCATGTCTA-CAAGGTTTGGGCCCAAAACTCCTTCCGAAAAAA
259 CATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAA
** ** *
5566241 TTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
323 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5566306 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
388 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
5566371 TGGCACACAGAAATATGAAGATGTGCCTGAACCAACCTACCACCCTATCGATCCACGGCTTGTGC
453 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
5566436 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGTTCATTTTGTCGGTTGGCTTAGG
518 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * * *
5566501 CATACGGCGTCCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATTGGAAG
583 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * * * *
5566566 CATGCAGAGGAGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGACCGGTTGAGCGCC
648 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
5566631 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
5566696 TCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCGGCACATGCTGGGCTCAGGCATGT
778 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
5566761 GCTGTTGCCGCATTTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCT
843 GCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * *
5566820 GACCGACAGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGGTTTGCGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
5566885 GTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
5566950 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5567015 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
5567080 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAA-TGCCTTCCGAAAAAATT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATT
* * *
5567144 TCAAAAAATCCTGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5567209 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
5567274 GCTTACAGAAATATCAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGTAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * * ** **
5567339 CTTGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCTGCCCGCCCATTTTATCATTTGGCTTAGGCA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
5567404 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGGCAGGATCGGCAGC
585 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA-GTAGGATCGGCAGC
* ** *
5567469 ACGGAGAGGGGGACCCGATCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
649 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * * *
5567534 ATACTCTCATTTCGTGGGTTGACTTAGGCATACGGAG--CATTCCCTA-TCGAAGCATACAGAGT
714 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGT
* * * * * *
5567596 TCATTCCGAATCTAAGATCGGATCAGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGT
778 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
5567661 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CCGAGTATCGCCGGAGAACCT
843 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * ** *
5567718 GATCGGCGACATTGGGGTTCCGATAATCGGGGGGGCCGGGGGGGCGTGTGCGCACATGATGTGTG
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-GTGTGCGCACATGATGTGCG
* *
5567783 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
64 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
5567848 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGG
129 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
5567913 TGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
194 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
5567978 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAA-TGCCTTCCGAAAAAA
259 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAA
* *
5568042 TTTCAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
323 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
5568107 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
388 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
5568172 TGGCACGTAGAGATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
453 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5568237 ATTCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTT
518 ATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-G--C--CCGCCCGCCCGCTCGTTTCGTCGGTT
** * ** *
5568302 GGCTTAGGTGTACGGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCAGCAGTAGG
575 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGG
* * * ** *
5568367 ATCGGTAGCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGC
640 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
5568432 TGAACGCCCGCACGCTTGTTCCGTGGGTTGACTTAGTCATACGGAGTTCACTCCCAGCCTAAGCA
705 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * * *
5568497 TACGGAGTTCATTCTAAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCACATGCTGGGCTC
770 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
5568562 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGAACC
835 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
5568627 T
900 T
* * * * * *
5568628 GGCCGGCGACATTGGGGTTCCTG-CGATCGAGGGGGTCGAGGGGGTGTGCGCACATGATGTGTGA
1 GACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
5568692 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
5568757 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* ** * *
5568822 GACACTTTTTTTACTTGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** *
5568887 ATGCCAAAAAAAATACAAGGATCACATCTATGAAGTTTGGGGCCAAAAGTCCTTCC-AAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-T
*** * *
5568951 TTTAAAAAATCTTAAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
324 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5569016 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
389 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
5569081 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAACACCTTTTCGATCCACGGCCTGCGCA
454 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
5569146 TCCCGTCTCTCTGGCCGACGAAGTGCCCGTACCCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTT
519 TCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
5569211 AGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GATCGAGGGTTGCAGCAGTAGGATCGA
580 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGG
* * ** *
5569275 CAGCATGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
645 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
5569340 GCCCCCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
5569405 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATACTGGGCTCGGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * * *
5569470 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCT
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * *
5569531 GACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCGCATGATGTGTGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
** *
5569596 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTGCTCATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5569661 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
5569726 ATGA-TTTTTTCAAATGATCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGC
196 A-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
5569790 ATACCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
5569855 TTAAAAAATCCTGAACCACAAAAACTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5569920 ATGCAACTTCACGTGAAGGCTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
5569985 ACATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCGACGACTTTCGCAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
5570050 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
5570115 GGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTG-GGCAGTAGGATCGGC
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * * *
5570179 AGCATGCAGAGGGGGACCTGGTCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGGCTAAGCG
646 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
5570244 CTCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A--C---G---A---A
711 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
5570283 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCAT
776 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
5570348 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACTT
841 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCT
* * * * * *
5570408 GACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGCGCGCACATTATGTACGA
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGA
* * ** *
5570473 TGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATAACTCATCAAACCTCGAGAACACACACC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5570538 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5570603 GACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** * * *
5570668 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTTCGGAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
5570733 TTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5570798 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * ** *
5570863 GCACACAGAAATATGAAGATGTGCATTAGGCCACCTACCACCCTATCGATCCACGGCTTACGCAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
5570928 CCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCTCTCGCTCGTTTCGTTGGTTAGCTTAGGCA
520 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
5570989 TACGGAGTTCAATCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGTAGCAGGATTGGCAGCA
585 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCA
* * * * * * *
5571054 CGTAAAGGGGGACCC-AGTCGATCTCTGACTTGCACATCCCGACCCTCTGGCCAGCTGAGCGCCC
650 CGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
5571118 GTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATATGGAGTT
714 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
5571183 CATTCCAAGTCTAAGATCGGACTC-GACCAAGGGTTGCGGCAGCACATGCTGGGCTAGGG-ATGT
779 CATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
5571246 GCTGGAGCCGCATTCTTCTTCATTGGGGCACCATCGTCGGAGCATCGTCGGAGATCCT
843 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * *
5571304 GACAGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGACGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
**
5571369 GTTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5571434 CCTGAAAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
5571499 ACACATTTTTCAAATGGTCACAAAATC-TGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * *
5571563 TGCCACCAAAAATACAAGGATCAGGTTTACCAAGTTTTGGGCAAAAACTCCTTGCG-AAAATTTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
5571627 TAAAAAAATCCC-AACCGTAAAATG-TTCAAAAATTATGAGAAAATAGAAAAACGAAGTAGTCTT
326 T-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA-AAAATAG-AAAACG-AGTCGTCTT
*
5571690 GCCATG-AACTTCACGTTGAAGGCTTAAGGGACCATTGTATGAA-TTACAA-CCAAAAAAATGGC
387 GCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5571752 -TTGGCACCGTAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
451 ATTGGCA-TGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
5571816 GCGCATCCCGTCTCTCTGGCCAGCGGAGTGCCCGCCCGCTCGTCTGCCCGCCCGCTTGCCTGCCC
514 GCGCATCCCGTCTCTCTGG-C--C-GA---------CG-TAG--T----GCCCGC---CC-GCCC
*
5571881 GCCCGCTCGTTTCGTCGGTTGG-TTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGA
555 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * *
5571945 CCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGATGGGGACCCGATCGATCCCCGGCTTGCGC
620 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
** * * * ** * *
5572010 ATCCCGTACCTCTGGCTGACTGAGCGCTCATACACTCGTTTCGTGGGTTGACTTAGGCATACAGA
685 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** *
5572075 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTG
750 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* *
5572140 CGGCAGCACATGCTGGGCTTGGGCAGGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T
815 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
5572202 -----CA---TCGGAGAACCT
880 CGGAGCATCGTCGGAGAACCT
*** * *
5572215 GACCGGTAACATTGGGGTTCCGACGAT-TGGGGGGCC--AGGGGTGTGCGCACATGATGTGCGAT
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
5572277 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5572342 CCTTAAAGAGCATTGGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
5572407 ACACTTTTTTGAAATGGACACAAAATCTTGTATACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * **
5572472 TGCCAAAAAAAATA-AGAGGATCACGTGTACCAAGTTTGGGTCCAAAACTCCTTCTAAAAAAATT
261 TGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * **
5572536 GTAAAAAATCTCGAACCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
325 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5572601 ATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5572666 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
455 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * *
5572731 CCCATCTCTCTGGATGGCGTAGTGCCCGCCCGTCCGCCCATCCGCCCGTCAGCACGTTTCATCGG
520 CCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCG--C--CCG-CC--C-GCTCGTTTCGTCGG
* * * *
5572796 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAATATCGGATCAGACCGAGGGTTGCGGTAGTA
573 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTA
* * * ** * * *
5572861 GGATCGGTAGCACGTAGAGGGGGTCTTGATTGATCCTCGACTTGCGCATCCCACCCCTCTGGCCG
638 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * *
5572926 GTTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
703 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
5572991 CATACGGAGTTCGTTACCAATCTACGATC-GTCATGGACCAAGGGTTGCGACAGCACATGCTTGG
768 CATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5573055 CTCGGGCACGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTTGGAGA
832 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
5573120 ACCT
897 ACCT
* * **
5573124 GATCGACGGCATTGGGGTTCCGGTGATC--GGGGGCTCGGGGGGGTGTGCGCACATGATGTGCGA
1 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGA
* *
5573187 TGGGTGCTGGTACTTGGCCC--ATATTGGCCCCCTATCCCTCA-CTAAACTTCAAGAACTCACAC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACAC
* * *
5573249 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAAGG
129 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5573314 GGACAATTTTTTC-AATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTG
194 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
5573378 CAAGCCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAATAT
259 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * **
5573443 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
324 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* **
5573508 CATGAAACTTGACGTGAATACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
389 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
5573573 GGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CTCACGGCTTGTGC
454 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGC
* * * * *
5573637 CTCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCTGCCAGTCCGCTTGTTTCGTCGGTTGACT
518 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
5573702 TAGGCATACGGAGTTCATTCCCAGTCTAAG
579 TAGGCATACGGAGTTCATTCCCAGTCTAAG
5573732 CATATGGAGT
Statistics
Matches: 17560, Mismatches: 2949, Indels: 2042
0.78 0.13 0.09
Matches are distributed among these distances:
856 6 0.00
857 266 0.02
858 24 0.00
859 183 0.01
860 2 0.00
861 1 0.00
863 152 0.01
864 40 0.00
865 50 0.00
866 96 0.01
867 155 0.01
868 1 0.00
869 1 0.00
870 69 0.00
871 257 0.01
872 8 0.00
873 403 0.02
874 774 0.04
875 320 0.02
876 402 0.02
877 161 0.01
878 456 0.03
879 8 0.00
880 6 0.00
881 2 0.00
882 233 0.01
883 404 0.02
884 98 0.01
885 7 0.00
886 3 0.00
887 2 0.00
888 2 0.00
889 12 0.00
890 204 0.01
891 789 0.04
892 593 0.03
893 170 0.01
894 184 0.01
895 859 0.05
896 695 0.04
897 505 0.03
898 555 0.03
899 393 0.02
900 1140 0.06
901 894 0.05
902 591 0.03
903 909 0.05
904 167 0.01
905 7 0.00
906 13 0.00
907 109 0.01
908 1061 0.06
909 435 0.02
910 101 0.01
911 96 0.01
912 6 0.00
913 3 0.00
914 3 0.00
915 5 0.00
916 3 0.00
917 3 0.00
918 10 0.00
919 22 0.00
920 13 0.00
921 247 0.01
922 75 0.00
923 15 0.00
924 29 0.00
925 17 0.00
926 8 0.00
927 33 0.00
928 11 0.00
929 6 0.00
930 6 0.00
931 10 0.00
932 9 0.00
933 19 0.00
934 23 0.00
935 18 0.00
936 11 0.00
937 15 0.00
938 17 0.00
939 22 0.00
940 10 0.00
941 11 0.00
942 20 0.00
943 14 0.00
944 6 0.00
945 9 0.00
946 3 0.00
947 10 0.00
948 14 0.00
949 6 0.00
950 5 0.00
951 3 0.00
953 6 0.00
954 9 0.00
955 12 0.00
956 16 0.00
957 9 0.00
958 18 0.00
959 3 0.00
960 11 0.00
961 8 0.00
962 12 0.00
963 22 0.00
964 5 0.00
965 8 0.00
966 5 0.00
967 7 0.00
968 21 0.00
969 12 0.00
970 16 0.00
971 31 0.00
972 16 0.00
973 22 0.00
974 26 0.00
975 52 0.00
976 40 0.00
977 15 0.00
978 14 0.00
979 7 0.00
980 11 0.00
981 11 0.00
982 9 0.00
983 24 0.00
984 24 0.00
985 14 0.00
986 23 0.00
987 38 0.00
988 27 0.00
989 18 0.00
990 9 0.00
991 14 0.00
992 13 0.00
993 10 0.00
994 6 0.00
995 12 0.00
996 18 0.00
997 10 0.00
998 14 0.00
999 17 0.00
1000 11 0.00
1001 5 0.00
1002 13 0.00
1003 9 0.00
1004 4 0.00
1005 16 0.00
1006 26 0.00
1007 28 0.00
1008 39 0.00
1009 27 0.00
1010 14 0.00
1011 7 0.00
1012 20 0.00
1013 3 0.00
1014 14 0.00
1015 15 0.00
1016 19 0.00
1017 39 0.00
1018 18 0.00
1019 18 0.00
1020 22 0.00
1021 17 0.00
1022 9 0.00
1023 25 0.00
1024 350 0.02
1025 322 0.02
1026 306 0.02
1027 313 0.02
1028 270 0.02
1029 220 0.01
1030 270 0.02
1031 334 0.02
1032 281 0.02
1033 294 0.02
1034 211 0.01
1035 226 0.01
1036 840 0.05
1037 201 0.01
1038 207 0.01
1039 254 0.01
1040 202 0.01
1041 172 0.01
1042 164 0.01
1043 178 0.01
1044 132 0.01
1045 361 0.02
1046 152 0.01
1047 237 0.01
1048 145 0.01
1049 111 0.01
1050 106 0.01
1051 126 0.01
1052 100 0.01
1053 406 0.02
1054 245 0.01
1055 121 0.01
1056 225 0.01
1057 221 0.01
1058 272 0.02
1059 375 0.02
1060 244 0.01
1061 161 0.01
1062 139 0.01
1063 133 0.01
1064 114 0.01
1065 118 0.01
1066 199 0.01
1067 181 0.01
1068 435 0.02
1069 203 0.01
1070 131 0.01
1071 116 0.01
1072 132 0.01
1073 130 0.01
1074 554 0.03
1075 89 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
Found at i:5555657 original size:26 final size:26
Alignment explanation
Indices: 5555621--5555673 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5555611 GTTAACTTAG
5555621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5555647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5555673 G
1 G
5555674 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5558393 original size:159 final size:159
Alignment explanation
Indices: 5558098--5558466 Score: 492
Period size: 159 Copynumber: 2.3 Consensus size: 159
5558088 TCTGCCCGCC
* * * * *
5558098 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTG
* * *
5558163 AAGGTTAAGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGTCGATCCTCAGGTTACGCATG
66 AAGGTTAAGACAGCAGGATCGACAGCACACAGAGGGAGACCCAGCCGATCCTCAGGTTACGCATC
* *
5558228 CTGCCCCTCTGGCCGGCTGAGCGCCCGTA
131 CCGCCCCTCTGGCAGGCTGAGCGCCCGTA
* *
5558257 CGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTG
* * * * ** * **
5558322 AGGGTTACTG-CAGCAGGATCGGCAGCGCGTAGAGGGAGACCCAGCCGATCC-CCGGCTTGTGCA
66 AAGGTTA-AGACAGCAGGATCGACAGCACACAGAGGGAGACCCAGCCGATCCTCAGG-TTACGCA
5558385 TCCCGCCCCTCTGGCAGGCTGAGCGCCCGTA
129 TCCCGCCCCTCTGGCAGGCTGAGCGCCCGTA
*
5558416 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAG
5558467 CATACGGAGT
Statistics
Matches: 184, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
158 4 0.02
159 179 0.97
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTG
AAGGTTAAGACAGCAGGATCGACAGCACACAGAGGGAGACCCAGCCGATCCTCAGGTTACGCATC
CCGCCCCTCTGGCAGGCTGAGCGCCCGTA
Found at i:5558493 original size:25 final size:25
Alignment explanation
Indices: 5558440--5558517 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
5558430 GTTGACTTAG
*
5558440 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
5558466 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
*
5558491 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
5558517 G
1 G
5558518 ATCGAACCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 22 0.45
26 27 0.55
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:5560302 original size:26 final size:26
Alignment explanation
Indices: 5560272--5560324 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5560262 GTTCACTTAG
*
5560272 GCATACAGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
** *
5560298 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5560324 G
1 G
5560325 ATAGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5560442 original size:185 final size:185
Alignment explanation
Indices: 5560114--5560529 Score: 509
Period size: 185 Copynumber: 2.3 Consensus size: 185
5560104 GTTGGCTTAG
* * * * *
5560114 GCATAC-AATGTTCATT-CCAGTCTAAGATTGGACCAGACCGAGTGTTGCAGTAGTAGGATCGAT
1 GCATACGAA-GTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGTAGCAGGATCGAC
* * * *
5560177 AGCACGTAGAGGGTGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCTGCTGAGCG
65 AGCACGCAGAGGGTGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCG
* * *
5560242 CCCGCCCACTCGTTTCTTGGGTTCACTTAGGCATACAGAGTTCTTTCCCAATCTAA
130 CCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * **
5560298 GCATATGGAGTTCATTCCCAGTCTAAGATAGGACTGGACCGAGGGTTAC-GATAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAG-TAGCAGGATCGAC
* ** * *
5560362 AGCACGCAGAGGG-GAACTCGGTCGATCCTCAGCTTGTGCATCCCGCCCCTCTGGCCCGCTGAGC
65 AGCACGCAGAGGGTG-ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGC
* * * *
5560426 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 GCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * *
5560483 GCATACGAAGTTCTTTCACAGT-TCAAGATCGGACCAGACCGAGGGTT
1 GCATACGAAGTTCATTCCCAGTCT-AAGATAGGACCAGACCGAGGGTT
5560530 GTGGCAGCAT
Statistics
Matches: 195, Mismatches: 32, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
184 15 0.08
185 180 0.92
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGTAGCAGGATCGACA
GCACGCAGAGGGTGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCGC
CCGCACACTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAATCTAA
Found at i:5562291 original size:26 final size:26
Alignment explanation
Indices: 5562257--5562307 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5562247 TGACTTTGGA
* *
5562257 ATACGGAGTTCACTCCCAGTCTAAGC
1 ATACAGAGTTCACTCCCAATCTAAGC
*
5562283 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCACTCCCAATCTAAG
5562308 ATCGGACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCACTCCCAATCTAAGC
Found at i:5563244 original size:901 final size:902
Alignment explanation
Indices: 5560298--5573731 Score: 17029
Period size: 908 Copynumber: 15.0 Consensus size: 902
5560288 CCCAATCTAA
* * * ** *
5560298 GCATATGGAGTTCATTCCCAGTCTAAGAT-AGGACTGGACCGAGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
5560362 AGCACGCAGAGGGGAACTCGGTCGATCCTC-AGCTTGTGCATCCCGCCCCTCTGGCCCGCTGAGC
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
5560426 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
5560491 AGTTCTTTCACAGT-TCAAGATCGGACCAGACCGAGGGTTGTGGCAGCATATGCTAGGCTCGGGC
194 AGTTCATTC-CAGTCT-AAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
5560555 ATGTGCTGGTGCCGCATTTTTCTTCG-CTGAGGCACCATCATCGGAGCATCATCGGAGAACCTAA
257 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * *
5560619 CCGACGGCATTGGGGTTCTGACGATCGAAGGGGTC-AGGGGG-GAGCGCACATGATGTGCGACGG
321 CCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
*
5560682 GTGCTGGTACTTGGCCCTGATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
385 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
5560746 TTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAATGTGTCTGAAATGGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
5560811 ACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
515 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
5560876 CCAACAAAAATAAAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * *
5560941 AAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATT
645 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-T
* * *
5561006 AAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAGGCCATAAAAAATGGCATTGG
709 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGG
* * * * *
5561071 CACGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATC
773 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
5561136 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGC
838 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCG--C--TCGTTTCGTCGGTTGGC
5561201 TTAG
899 TTAG
* * * * * * **
5561205 GCATACAGAGTTCATTCCCACTCTAAGATCAGACTGGACTGAGGGTTGCGGCACCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
5561270 GCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGGGCATCCTGCCTCTCTGGCCTGCTGAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
5561335 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGCATGCGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
5561399 TTCATTCGTAGTCTAAGATCCGACCGGACCGATGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTC-CAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * * *
5561464 TGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCAGACCAG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * * *
5561529 CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCCCACATGATGAGTGATGAGTG
325 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
5561594 CTGCTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA-A-CCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
5561657 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
5561722 TTTTTCAAATTGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGACTTTTTTTATGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
5561787 ACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * *
5561852 AATCTCGAACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATTAAA
648 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAA
*
5561916 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAATGGCATTGGCAC
712 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCAC
** * *
5561981 ATAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCCCG
776 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
5562046 TCTCTCTGGTCGACGTAGTGCCCGCCAG--T----------TCGTTTCGTCGGTTGGCTTAG
841 TCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** * *
5562096 GCATACGGAGTTCATTCCCAGCCTAAGATCAAACTGGACCAAGGGTT-ATGAAGCTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGC-AGGATCGGC
* * * * *
5562160 AGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCCGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * * * * * *
5562225 CCCATACGCTCCTTTCATGGGTTGACTTTGGAATACGGAGTTCACTCCCAGTCTAAGCATACAGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
5562290 GTTCATTCCCAATCTAAGATCGGACCATACCAAGGGTTGCGGCAGCACATGCTGTGCTCGGGCAT
195 GTTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** * * *
5562355 GTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATTGTCGGAGTATCGTCAGAGAACCTGACCG
259 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
** * * * *
5562420 TTGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGTGGTGTGTGCACATGATGTGCGATGGGTGG
324 GCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
5562485 TAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGA-AACTCAGACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
5562549 AGAGGATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5562614 TTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
5562679 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTTTTCCGAAAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * ** * **
5562744 ATCCCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCATGAAAC
649 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
5562809 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGTCTTTGGCATGCA
714 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
5562874 GAAATATGAAGATGTACCTAAACCCACCTACCAGCTTATCGATCCACGGCTTGCGCATCCCGTCT
779 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
5562939 CTCTGGCTGGCATAGTGCCTGCCTGCCTGCCAGCCCGCTCGTTTCAGT-GGTTGGCTTAG
844 CTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTAG
* * * * * * *
5562998 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAACAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
5563063 GCACGCAGAGGGGG-CCCGGCCGATTCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5563127 CCGCACGCTCATTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
5563192 TTCATTACCAGTCTAAGATCGGACCATACCAAGGGTTGCGGCAGCACATGCTGTGCCCGAGCATG
196 TTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * *
5563257 TGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGTATCGTCAGAGAACCTGACCGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * * *
5563322 CGACACTGGGGTTCC-AGCGATCGGGGGGCCGAGGGGGTGTGTGCACATGATGTGCAATGGGTGG
325 CGGCATTGGGGTTCCGA-CGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * *
5563386 TAGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAATCCTCGAGAACTCAAACTCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
5563451 AGAGCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5563516 TCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5563581 -AAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAAAAAATTTTAAAA
584 CAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * * *
5563645 AATCTCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
648 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
5563710 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* **
5563775 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTTTCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
5563840 TCTCTGGTCGACGTA-T---TGCCTGCCCGCCCGCCCCCTCGTTTCGTCAGTTGGGTTAG
843 TCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5563896 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCT-CACCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
5563960 AGCACGTAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCA
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
5564025 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
5564086 G--------A-TC----A---GACC-G----AGGGTTGCGCCAGTACATGCTGGGCTCGAGCATA
195 GTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * **
5564130 TACTGGTGCCGCATTTTTCTCCATCGGGGCACCATCGTCGAAGCACCACCGGAGAACCTGACCGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * *
5564195 CGGCATTGGGGTTCCGACGATCGGGGGGCTG-GGGGTGTGTGCGCACATGATGTGTGATGGATGC
325 CGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
*
5564259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * *
5564324 AGAGCATTTGAGATTTTACAGGTTTGCTTCTAGTAGCCAATAAAGTGTGTGAAATGAGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5564389 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
5564454 CAAAAATACAAGGATCAGGTTTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * ** ** * *
5564519 ATCTCGAATCGCAAAAAGTTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTTTTGCCATGAAA
649 ATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
5564584 ATTCATGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* **
5564649 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTTTCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
5564714 TCTCTGGTCGACGTA-T---TGCCTGCCCGCCCGCCCCCTCGTTTCGTCAGTTGGGTTAG
843 TCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5564770 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCT-CACCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * *
5564834 AGCACGTAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
5564899 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC--TGT---C-TA---A
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
5564955 G--------A-TC--AGA---G--CAGACCAAGGATTGTGGTAGCATATGCTGGGCTCGAGCATG
195 GTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * ** * ** * *
5565004 TTCTGGTGCCGTATTTTTCTTCACCGGGGCACAATCACCGGAGCATCGTCGAAGAACCTGACCGA
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
5565069 CTGCATTAGGGTTTCGACAATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
325 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
5565133 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5565198 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5565263 TTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
5565328 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGCTTCCGAAAAAATTTT-AAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * *
5565392 ATCTCC-AACCG-AAAAAGTTT-AGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCACGAA
649 ATC-CCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5565454 ACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
712 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
5565519 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCATCCCGT
777 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
5565584 CTCTCTAGCTGGCGTAGTG--C-CC-GCCT----GCCCGCTCGTTTCATCGGTTGGCTTAG
842 CTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
5565637 GCATACGGAGTTCATTTCCAGTGTAAGATCAAATTGGACTGAGGGTTGTGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
5565702 GCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGTGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5565767 TCGCACACTTGTTT-GTGGGTTGACTTAGGCAAAC-G-G---------AG--T-----T-C--A-
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
5565809 TTC---CCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTTGGGCATGT
196 TTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * ** *
5565871 GCTGGTGCCGCATTTTTCTTTG-CAGGGCACCACCGCCGGAGCATCACCGGAGAACCTGACCGAC
261 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
*
5565935 GGCGTTGGGGTTCCTG-CGAT--------CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
326 GGCATTGGGGTTCC-GACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
** * * *
5565991 CATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCATAAA
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5566056 GAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
455 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5566121 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GGTAGAATTTTTTTGTGCATGCCAA
520 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAA
* * * *
5566185 AAAAAATACAAGGATCATGTCTA-CAAGGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAA
584 CAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
** ** *
5566249 AATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
648 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5566314 CTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
5566379 AGAAATATGAAGATGTGCCTGAACCAACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
5566444 TCTCTGGCCGGCGTAGTGCCCG-C--CC-GCCCACCCGTTCATTTTGTCGGTTGGCTTAG
843 TCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
5566500 GCATACGGCGTCCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATTGGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
5566565 GCATGCAGAGGAGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGACCGGTTGAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
5566630 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
5566695 TTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCGGCACATGCTGGGCTCAGGCATG
196 TTCATTC-CAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
5566760 TGCTGTTGCCGCATTTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCG
260 TGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
5566825 ACAGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGGTTTGCGCACATGATGTGCGATGTGTG
324 GCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
5566890 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
5566955 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
5567020 TTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
5567085 ACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCC-AAAATGCCTTCCGAAAAAATTTCAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAA
* *
5567149 AAATCCTGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
647 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
***
5567214 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTA
712 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * **
5567279 CAGAAATATCAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGTATCTTGT
777 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * **
5567344 CTCTCTGGCCGGCGTAGAGCCCGCCCGCCTGCCCGCCC-AT--TTT-ATCATTTGGCTTAG
842 CTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * *
5567401 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCA-GCAGGATCGGC
* * ** *
5567466 AGCACGGAGAGGGGGACCCGATCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * * * *
5567531 CCCATACTCTCATTTCGTGGGTTGACTTAGGCATACGGAG--CATTCCCTA-TCGAAGCATACAG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGG
* * * * *
5567593 AGTTCATTCCGAATCTAAGATCGGATCAGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
194 AGTTCATTCC-AGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
5567658 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CCGAGTATCGCCGGAGAACCTGATC
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* ** * *
5567722 GGCGACATTGGGGTTCCGATAATCGGGGGGGCCGGGGGGGCGTGTGCGCACATGATGTGTGATGG
323 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAGGGG-GTGTGCGCACATGATGTGCGATGG
* *
5567787 GTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCC
385 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
5567852 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGTGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
5567917 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
515 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
5567982 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCC-AAAATGCCTTCCGAAAAAATTTC
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTT
*
5568046 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
644 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
5568111 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
709 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
5568176 ACGTAGAGATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATTC
774 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
5568241 CGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCT
839 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTG-CC-T--GCCCGCCCGCTCGTTTCGTCGGTTGGCT
5568306 TAG
900 TAG
** * * * * * *
5568309 GTGTACGGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
5568374 GCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
5568439 CCGCACGCTTGTTCCGTGGGTTGACTTAGTCATACGGAGTTCACTCCCAGCCTAAGCATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
5568504 TTCATTCTAAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTC-CAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
5568569 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGGCCGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * *
5568634 CGACATTGGGGTTCCTG-CGATCGAGGGGGTCGAGGGGGTGTGCGCACATGATGTGTGATGGGTG
325 CGGCATTGGGGTTCC-GACGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
5568698 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
5568763 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* ** * *
5568828 TTTTTTACTTGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** *
5568893 AAAAAAATACAAGGATCACATCTATGAAGTTTGGGGCCAAAAGTCCTTCC-AAAAAATTTTTAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAA
*** * *
5568957 AAATCTTAAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
647 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5569022 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
712 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
5569087 CAAAAATATGAAGATGTGCCTAAACCCACCTAACACCTTTTCGATCCACGGCCTGCGCATCCCGT
777 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
5569152 CTCTCTGGCCGACGAAGTGCCCGTACC--CCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAG
842 CTCTCTGGCCGGCGTAGTGCCCG--CCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
5569213 GCATACAGAGTTCATTCCTAGTCTAAGATCAGAC-CGATCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
5569277 GCATGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5569342 CCCCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
5569407 TTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATACTGGGCTCGGGCATG
196 TTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * *
5569472 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
5569537 TGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCGCATGATGTGTGATGGGTGC
325 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** *
5569602 TGGTACTTGGCCCTTATATTGGCCCCCTATTGCTCATCAAACCTTGAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
5569667 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGGATGA-T
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-CACT
* * * *
5569731 TTTTTCAAATGATCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
5569796 ACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * * * *
5569861 AATCCTGAACCACAAAAACTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGCAA
648 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
5569926 CTTCACGTGAAGGCTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGACATGC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
5569991 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCGACGACTTTCGCATCCCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
5570056 TCTCTGGCCGACGTAGTGCCCGCCCG-CTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
843 TCTCTGGCCGGCGTAGTGCCCGCCTGCCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5570116 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTG-GGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
5570180 GCATGCAGAGGGGGACCTGGTCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGGCTAAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
5570245 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C--AG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
5570306 --------A--C------CGGACC-G----AGGGTTGCGGCAGCACATACTGGGCTCGGGCATGT
196 TTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* *
5570350 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACTTGACCGA
261 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGG
* * * * * *
5570414 CAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGCGCGCACATTATGTACGATGGGTG
325 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** *
5570479 CTGGTACTTGGCTCTTATATTGGCCCCTTATAACTCATCAAACCTCGAGAACACACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
5570544 AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
5570609 TTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * *
5570674 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTTCGGAAAAATTTTAAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * *
5570739 AGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
648 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5570804 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACAC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * ** *
5570869 AGAAATATGAAGATGTGCATTAGGCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
5570934 TCTCTGGCCGGCATAGTGCCCG-C--CCT-----CTCGCTCGTTTCGTTGGTTAGCTTAG
843 TCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
5570986 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
5571051 GCACGTAAAGGGGGACCCAGTCGATCTCTGACTTGCACATCCCGACCCTCTGGCCAGCTGAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
5571116 CCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
5571181 TTCATTCCAAGTCTAAGATCGGACTC-GACCAAGGGTTGCGGCAGCACATGCTGGGCTAGGG-AT
196 TTCATTCC-AGTCTAAGATCGGAC-CAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
5571244 GTGCTGGAGCCGCATTCTTCTTCATTGGGGCACCATCGTCGGAGCATCGTCGGAGATCCTGACAG
259 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * **
5571309 GCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGACGTGCGATGTTTG
324 GCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
5571374 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
5571439 AAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
5571504 TTTTTCAAATGGTCACAAAATC-TGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
5571568 CCAAAAATACAAGGATCAGGTTTACCAAGTTTTGGG-CAAAAACTCCTTGCG-AAAATTTTTAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTT-AA
* * * *
5571631 AAAATCCC-AACCGTAAAATG-TTCAAAAATTATGAGAAAATAGAAAAACGAAGTAGTCTTGCCA
646 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA-AAAATAG-AAAACG-AGTCGTCTTGCCA
*
5571694 TG-AACTTCACGTTGAAGGCTTAAGGGACCATTGTATGAA-TTACAA-CCAAAAAAATGGC-TTG
708 TGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
5571755 GCACCGTAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
772 GCA-CGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
5571820 ATCCCGTCTCTCTGGCCAGCGGAGTGCCCGCCCGCTCGTCTGCCCGCCCGCTTGCCTGCCCGCCC
835 ATCCCGTCTCTCTGG-C--C-----G---G--CG-TAG--TGCCCG--C-C-TGCCTGCCCGCCC
5571885 GCTCGTTTCGTCGGTTGG-TTAG
880 GCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5571907 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * *
5571972 GCACGCAGATGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGTACCTCTGGCTGACTGAGCGC
66 GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** * * *
5572037 TCATACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * * *
5572102 TTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCAGG
196 TTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
5572167 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA---TCGGAGAACCTGACCGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
*** *
5572221 TAACATTGGGGTTCCGACGATTGGGGGGCC-A-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
325 CGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
5572284 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5572349 GAGCATTGGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
455 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
5572414 TTTGAAATGGACACAAAATCTTGTATACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
520 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * ** *
5572479 AAAAATA-AGAGGATCACGTGTACCAAGTTTGGGTCCAAAACTCCTTCTAAAAAAATTGTAAAAA
585 AAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * ** *
5572543 ATCTCGAACCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAAC
649 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
5572608 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
714 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
5572673 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCT
779 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * *
5572738 CTCTGGATGGCGTAGTGCCCGCCCGTCCGCCCATCCGCCCGTCAGCACGTTTCATCGGTTGGCTT
844 CTCTGGCCGGCGTAGTGCCCG-CC-T--G-CC-T--GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
5572803 AG
901 AG
* * * * * *
5572805 GCATACAGAGTTCATTCCCAGTCTAATATCGGA-TCAGACCGAGGGTTGCGGTAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAGGATCGGC
* * ** * * * * * *
5572869 AGCACGTAGAGGGGGTCTTGATTGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGTTGAGCA
65 AGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
5572934 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
5572999 GTTCGTTACCAATCTACGATC-G-TCATGGACCAAGGGTTGCGACAGCACATGCTTGGCTCGGGC
195 GTTCATT-CCAGTCTAAGATCGGACCA--GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
5573062 ACGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGAT
257 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* ** *
5573127 CGACGGCATTGGGGTTCCGGTGATC-GGGGGCTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
322 CGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
5573191 TGCTGGTACTTGGCCC--ATATTGGCCCCCTATCCCTCA-CTAAACTTCAAGAACTCACACCCCC
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCC
* * *
5573253 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAAGGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
5573318 AATTTTTTC-AATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAG
515 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
5573382 CCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAATATTTTA
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * **
5573447 AAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
645 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* **
5573512 AAACTTGACGTGAATACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
710 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
5573577 TGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CTCACGGCTTGTGCCTCC
775 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCATCC
* * * * *
5573641 CGTCTCTCTGGCCGACGTAGTGCCCG-CTCGCCTGCCAGTCCGCTTGTTTCGTCGGTTGACTTAG
839 CGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
5573705 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
5573732 CATATGGAGT
Statistics
Matches: 11062, Mismatches: 1190, Indels: 557
0.86 0.09 0.04
Matches are distributed among these distances:
854 2 0.00
855 1 0.00
856 7 0.00
857 266 0.02
858 12 0.00
859 186 0.02
860 2 0.00
861 5 0.00
863 140 0.01
864 21 0.00
865 50 0.00
866 74 0.01
867 147 0.01
869 6 0.00
870 65 0.01
871 288 0.03
872 17 0.00
873 395 0.04
874 768 0.07
875 16 0.00
876 3 0.00
877 121 0.01
878 460 0.04
881 2 0.00
882 7 0.00
884 1 0.00
885 3 0.00
886 5 0.00
888 1 0.00
889 7 0.00
890 230 0.02
891 422 0.04
892 272 0.02
893 56 0.01
894 176 0.02
895 214 0.02
896 90 0.01
897 55 0.00
898 404 0.04
899 129 0.01
900 620 0.06
901 854 0.08
902 578 0.05
903 929 0.08
904 88 0.01
905 10 0.00
906 163 0.01
907 449 0.04
908 1259 0.11
909 474 0.04
910 136 0.01
911 95 0.01
914 3 0.00
917 3 0.00
919 1 0.00
920 1 0.00
921 221 0.02
922 52 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:5566695 original size:26 final size:26
Alignment explanation
Indices: 5566659--5566711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5566649 GTTGACTTAG
5566659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5566685 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5566711 G
1 G
5566712 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5570090 original size:12 final size:12
Alignment explanation
Indices: 5570073--5570097 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5570063 CCGACGTAGT
5570073 GCCCGCCCGCTC
1 GCCCGCCCGCTC
5570085 GCCCGCCCGCTC
1 GCCCGCCCGCTC
5570097 G
1 G
5570098 TTTTGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:5571175 original size:26 final size:26
Alignment explanation
Indices: 5571145--5571197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5571135 GTTGACTTAG
5571145 GCATACGGAGTTCATTTCC-AGTCTAA
1 GCATACGGAGTTCA-TTCCAAGTCTAA
*
5571171 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5571197 G
1 G
5571198 ATCGGACTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5571865 original size:16 final size:16
Alignment explanation
Indices: 5571844--5571890 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
5571834 GCCAGCGGAG
5571844 TGCCCGCCCGCTCGTC
1 TGCCCGCCCGCTCGTC
* *
5571860 TGCCCGCCCGCTTGCC
1 TGCCCGCCCGCTCGTC
5571876 TGCCCGCCCGCTCGT
1 TGCCCGCCCGCTCGT
5571891 TTCGTCGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.00, C:0.55, G:0.26, T:0.19
Consensus pattern (16 bp):
TGCCCGCCCGCTCGTC
Found at i:5572097 original size:26 final size:26
Alignment explanation
Indices: 5572066--5572118 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5572056 GTTGACTTAG
5572066 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
5572092 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5572118 G
1 G
5572119 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5573014 original size:26 final size:26
Alignment explanation
Indices: 5572964--5573014 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5572954 GTTGACTTAG
* *
5572964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
*
5572990 GCATACGGAGTTCGTTACCAATCTA
1 GCATACGGAGTTCATTACCAATCTA
5573015 CGATCGTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:5573741 original size:26 final size:26
Alignment explanation
Indices: 5573705--5573757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5573695 GTTGACTTAG
*
5573705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5573731 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5573757 G
1 G
5573758 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5574388 original size:744 final size:741
Alignment explanation
Indices: 5572942--5574475 Score: 2303
Period size: 744 Copynumber: 2.1 Consensus size: 741
5572932 CACCCGCACG
* * *
5572942 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTA
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTA
* * * *
5573007 CCAATCTACGATCGTCATGGACCAAGGGTTGCGACAGCACATGCTTGGCTCGGGCACGTGCTGGT
66 CCAATCTAAGATCGACACGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTGGT
* * * *
5573072 GCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGATCGACGGCATT
131 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * *
5573137 GGGGTTCCGGTGATCGGGGGCTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
196 GGGGTGCCAGCGATCGGGGGCTCGGAGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTT
* *
5573202 GGCCCATATTGGCCCCCTATCCCTCACTAAACTTCAAGAACTCACACCCCCTTAAAGAGCATTTG
261 GGCCCATATTGGCCCCCTATCCCTCACTAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTG
* * *
5573267 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAAGGGGACAATTTTTTCAATGG
326 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAGCTGAAAACGGGACAATTTTTTCAATGG
* *
5573332 TCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAATAAAAATACAA
391 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAA
* *
5573397 GGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAATATTTTAAAAAATCCTGAACCG
456 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCG
** * *
5573462 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAT
521 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
5573527 ACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATCAAG
586 ACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATCAAG
* * * *
5573592 ATGTGCCTAAACCCACCTACCACCCTATCGACTCACGGCTTGTGCCTCCCGTCTCTCTGGCC-GA
651 ATCTGCCTAAACCCACCTACCACCCTATCGACTCACGGCATGCGCATCCCGTCTCTCTGGCCAG-
* * * *
5573656 CGTAGTGCCCGCTCGC-CTGCCAGTCCG
715 CGTAGTGCCCACCCGCTC-GCCAGCCCA
* * *
5573683 CTTGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTA
* *
5573748 CCAATCTAAGATCAGAC-CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCAATCTAAGATC-GACACGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTGG
** * *
5573812 TGCCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGTATCGTCGGAGAACTTGACCGACGGCAT
130 TGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
*
5573877 TGTGGGTGCCAGCGATCGAGGGG-TTGGAGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTA
195 TG-GGGTGCCAGCGATCG-GGGGCTCGGAGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTA
* *
5573941 CTTGGCCCTTATATTGGCCTCCTATCCCTCA-TCAAACCTCAAGAACTCACACCCTCTTAAAGAG
258 CTTGGCCC--ATATTGGCCCCCTATCCCTCACT-AAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
5574005 CAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GCTTAAAATCGGGACACTTTTT
320 CAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAGCTGAAAA-CGGGACAATTTTT
*
5574069 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
384 TC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
5574134 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAT
448 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAAT
* *
5574197 CCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
512 CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
5574262 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
577 CACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
5574327 AATATGAAGATCTTCCTAAACCCACCTACCACCCTATCGA-TCCACGGCATGCGCATCCCGTCTC
642 AATATCAAGATCTGCCTAAACCCACCTACCACCCTATCGACT-CACGGCATGCGCATCCCGTCTC
* *
5574391 TCTGGCCAGCGTAGTGCCTACCCGCTCGCCTGCCCA
706 TCTGGCCAGCGTAGTGCCCACCCGCTCGCCAGCCCA
* * * *
5574427 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGGTCATTCCCTGTCTAAG
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5574476 ATTGGACCAG
Statistics
Matches: 714, Mismatches: 67, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
741 173 0.24
742 60 0.08
743 15 0.02
744 378 0.53
745 88 0.12
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (741 bp):
CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTA
CCAATCTAAGATCGACACGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTGGT
GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
GGGGTGCCAGCGATCGGGGGCTCGGAGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTT
GGCCCATATTGGCCCCCTATCCCTCACTAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAGCTGAAAACGGGACAATTTTTTCAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
ACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATCAAG
ATCTGCCTAAACCCACCTACCACCCTATCGACTCACGGCATGCGCATCCCGTCTCTCTGGCCAGC
GTAGTGCCCACCCGCTCGCCAGCCCA
Found at i:5574636 original size:26 final size:26
Alignment explanation
Indices: 5574607--5574659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5574597 GTTGACTTAG
*
5574607 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
*
5574633 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
5574659 G
1 G
5574660 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:5576235 original size:26 final size:26
Alignment explanation
Indices: 5576206--5576258 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5576196 GTTGACTTAG
5576206 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5576232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5576258 G
1 G
5576259 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5578016 original size:26 final size:26
Alignment explanation
Indices: 5577978--5578032 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
5577968 TAGGTTGACT
*
5577978 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTACCAGTC
*
5578004 TAAGCATATGGAGTTCATTACCAGTC
1 TAAGCATACGGAGTTCATTACCAGTC
5578030 TAA
1 TAA
5578033 ATTTGGACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTACCAGTC
Found at i:5579795 original size:26 final size:26
Alignment explanation
Indices: 5579758--5579807 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5579748 GACTTAGGCA
5579758 TACGGAGCTCATTCCCAGTCTAAGCG
1 TACGGAGCTCATTCCCAGTCTAAGCG
*
5579784 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
5579808 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCG
Found at i:5580681 original size:26 final size:26
Alignment explanation
Indices: 5580645--5580697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5580635 GTTGACTTAG
5580645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5580671 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5580697 G
1 G
5580698 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5580738 original size:890 final size:894
Alignment explanation
Indices: 5575336--5581331 Score: 7384
Period size: 873 Copynumber: 6.7 Consensus size: 894
5575326 GTTGGCTTAG
*
5575336 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5575401 CTCGGGCATGTGCTAGTGCCGCATTTTTCTT--T---G-----T---CGGAGCATC-GCGGAGAA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATCGGAGAA
* * * *
5575452 CCTGACCGGCGGCATT-AGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCTCATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
5575516 GATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
5575581 -CCCCTTAAAAAGCATTTGAGATTTTACAAGATTGCTGCCCAGTAGCCATTAAGAAGTGTCTAGA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATT-A-AAGTGTCT-GA
* *
5575645 AATGGGGACACTTTTTTCAAGT-GTCACAAAATCTTGGTACACTTCG-G-GTTTAGCTGAATTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * *
5575707 TTTTGTGCATGCCAACAAACATACAAGG-TCTCGTCATACCAAGTTT-AGGCCAAAAGGTCCTTC
384 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAA-CTCCTTC
* * * * ** * *
5575770 CCAAAAAATTTT-AAAAATCCT-GACCCCAAAAAACTTTTCAAAAATCGTAAAAAATAGGGAAAC
447 CGAAAAAATTTTAAAAAATCCTAAACCTC-AAAAA-GTTTCAAAAATTATGAAAAATA-GAAAAC
*
5575833 GAGTCGTCCTTGCCATG-AAC-TCACGTGAAAGCTTAAGGG-CCATTGTATGAATTTACAAGCCA
509 GAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
5575895 TAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
573 TAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * ** *
5575960 ACTGCTTGCGCATCCGGTCCCTCTGGCCGGCATAGTGCCTGCCCGCCTGCCCGCCCGCCCACCTG
638 ACAGCTTGCGCATCCTGTCTCTCTGGCC-G---A----C-G-TAG-CT---CGCCCGCCCACCCG
* * * **
5576025 CTCGTTTCGTTGGTTGGCATAGGCATACGGAGTTCATTCCTAGACTAAGATCAGACTGGACCAAG
689 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAG
* * * ** * * ** *
5576090 GGTTACAGTAGTAGGATCGGCAACACGTGGAAGGGGACCCGTCCGATCCCCAACTTGCGCATCCT
754 GGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
5576155 GCCCCTCTGGCCGGCTGTA-CGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTC
819 GCCCCTCTGGCCGGCTG-AGCGCCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
5576219 ATTCCCAGTCTAA
882 ATTCCCAGTCTAA
* * *
5576232 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5576297 CTCGGGCATGTGCTAGTGCTGCATTTTTCGTCGTCGGAGCACCATCACCGAAGCATC-GCTGGAG
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGG-GCACCATCGCCGGAGCATCATC-GGAG
** * **
5576361 AACCTGACCGTTGGCATTGGGGTTCCGACGAT-TAGGGGGCC-GGGGG-GTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5576423 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5576488 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
5576552 AGGGACACTTTTTTTATATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAAATTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5576617 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA-TTTGGGGTCAAAACTCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
5576681 ATTTTAAAAAATCCTGAACCACAAAAAGATTGAAAAATTGTGAAAAATAGCAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTAAACCTCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* *
5576746 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAATGGCAA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCAT
5576811 TGGC-T-CAAAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACAGCTTGC
584 TGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * *
5576873 GCAT-CTCGTCTCTCTGGCCGACGTAGTTCCCGCCTGCCCACCCGCCCATTTGTTTCATCAGTTG
647 GCATCCT-GTCTCTCTGGCCGACGTAG--CTCGCCCGCCCACCCG--C--TCGTTTCGTCGGTTG
* * * * * *
5576937 GCTTAGGGATACAGAGTTCATTCCTAGTATAATATTAGACCAGATCAAGGGTTGCAGTAGCAGGA
705 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGA
* * * * *
5577002 TCAGCAGCACGCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTTGCCGACT
770 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
5577067 GAGCACCCGACGCTCGTTTCTTGGGTTAACTTAGGCATACGGAGTTCA-T-----TC---
835 GAGCGCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5577118 -C-T----AG-----T-CC-G----AGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5577166 CTCGAGCATGTGCTGGTG-TCACATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATTGGAGA
66 CTCGAGCATGTGCTGGTGCT-GCATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATCGGAGA
** * * ** *
5577230 ACCTGACCGGTGGCATTTGGGTTCTGGCGATCGGGGGGATCGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5577295 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
5577360 CCCCCTTAAAAAGCAATTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5577425 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
5577490 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** *
5577555 TTTT-AAAAAGGCTCAAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 TTTTAAAAAATCCT-AAACC-TCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
* ** * * * *
5577618 TGCCATGAAACATCTTGTGAACGCTTAAGGGACCATTGTATGCATTTACAGGTCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
** * * * *
5577683 ATTGGCACACAGAAATATGAAGATTTCCCTAAACCCACATACCACCTTATCGATCCACAGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* *
5577748 GCATCCCGTCTCTCTGGCCGATGTAGTGCTCGCCCACCCCCGCGCC-CGTCCGCTCGTTTCGTCG
647 GCATCCTGTCTCTCTGGCCGACGTA--GCTCG------CCCGC-CCAC--CCGCTCGTTTCGTCG
* * * * *
5577812 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGC
701 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGC
* * * * *
5577877 AGGATCGGCAGCACGTAGAGGGGGACCC-ATTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGT
766 AGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
5577941 CGGCTGAGCGCCCACACGCCCGTTTCGTAGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
830 CGGCTGAGCGCCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5578006 A
894 A
* * * *
5578007 GCATATGGAGTTCATTACCAGTCTAA-ATTTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
5578071 GCTC-AGATATGTGCTGGAGCTGCATTTTTCTTCACCGGGGCACCGTCGCAGGAGCATCATCGGA
65 GCTCGAG-CATGTGCTGGTGCTGCATTTTTCTTCATC-GGGCACCATCGCCGGAGCATCATCGGA
* ** * * *
5578135 GAACCGGACCGACGAAATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGCGATGTGTGCACATGAT
128 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGAT
* * * **
5578200 GTGCGATGGTTGCTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCTTAAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5578265 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
5578330 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5578395 TTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAA
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5578460 AAAATTTTAAAAAATCCCAAACCAT-AAGAAGTTTCAAAAATTACGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCTAAACC-TCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
*
5578524 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAATG
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATG
*
5578589 GCAATGGC-T-CAAAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACAGC
580 GCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
* * * * *
5578651 TTGCGCAT-CTCGTCTCTCTGGCCGACGTAGTTCCCGCCTGCCCACCCGCCTATTTGTTTCATCA
643 TTGCGCATCCT-GTCTCTCTGGCCGACGTAG--CTCGCCCGCCCACCCG-C---TCGTTTCGTCG
* * * * * *
5578715 GTTGGCTTAGGGATACAGAGTTCATTCCTAGTATAATATTAGACCAGATCAAGGGTTGCAGTAGC
701 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGC
* * * * *
5578780 AGGATCAGCAGCACGCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTTTTGCC
766 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
5578845 GACTGAGCACCCGACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCA-T-----TC---
831 GGCTGAGCGCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
5578900 -C-T----AG-----T-CC-G----AGATTGGACCGGACCGAGGGTTGCGAAAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5578948 CTCAAGCATGTGCTGGTG-TCGCATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATTGGAGA
66 CTCGAGCATGTGCTGGTGCT-GCATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATCGGAGA
** * * ** *
5579012 ACCTGACCGGTGGCATTTGGGTTCTGGCGATCGGGGGGATCGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5579077 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5579142 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5579207 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5579272 GCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
5579337 TTTTAAAAAATCCCAAACCAT-AAGAAGTTTCAAAAATTACGAAAAATAGAAAACGAGTCGTCTT
455 TTTTAAAAAATCCTAAACC-TCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
5579401 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
* * *
5579466 TTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCAC-GACTTGC
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGC
* * * * ** * *
5579530 GCCTCCCGTCTCTCTTGTCGGTGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
647 GCATCCTGTCTCTCTGGCCGACGTAG-CT-CGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
* ** *** *
5579595 GGCATACGGAGTTCATTCCCAGTCTAAGATGGGATTGGACCAAGGGTTGCAGTAGCAGGATCGAC
710 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGATCGGC
* * *
5579660 AGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
775 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** *
5579725 CCCGTTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
840 CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5579781 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAAACGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5579845 GCTCGAGCATGTGCTGGTGCTGAATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATC-GGGCACCATCGCCGGAGCATCATCGGAG
* * * * * *
5579910 AACCTGACCAACAGCATTGGTGTTCCGGCGATCGGGGGGGCCAGGGGGTGTCCGCACAGGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * ** *
5579975 CGATGGGGGATGGTACTTGGCCATTATATTGGCTTCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * ** *
5580040 A-CCTCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCAAACAAAGTGTCTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5580104 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA-TTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5580168 TGCAGGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCCAAAACTCTTTCC-AAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
5580232 ATTTTAAAAAATCCTAAACCTCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTAAACCTCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* * *
5580297 ACCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATACAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAATGGCA
* * *
5580362 TTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
*
5580427 CATCCTGTCTCTCTGGCCGACGTAG-T-GCCCGCCCAACCGCTCGTTTCGTCGGTTGGCTTAGGC
648 CATCCTGTCTCTCTGGCCGACGTAGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** *
5580490 GTACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-GATAGCTGGAT-GGCAG
713 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAG-TAGCAGGATCGGCAG
* *
5580553 CATGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
777 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
5580617 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 C-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5580671 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5580736 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATC-GGGCACCATCGCCGGAGCATCATCGGAGA
5580801 ACCTGACCGACGGCATTGGGGGTTCCGGCGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATT-GGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5580864 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5580929 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5580994 CGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
5581058 TGCATCCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTTCATCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
5581123 ATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCTTCT
454 ATTTTAAAAAATCCT-AAACCTCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
**
5581187 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCAATGAATTTACAAGCCATGAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
* * *
5581252 ATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
*
5581317 ACATCCTGTCTCTCT
647 GCATCCTGTCTCTCT
5581332 TCGTCGGGGT
Statistics
Matches: 4430, Mismatches: 514, Indels: 317
0.84 0.10 0.06
Matches are distributed among these distances:
868 50 0.01
869 68 0.02
870 5 0.00
871 207 0.05
872 196 0.04
873 509 0.11
874 98 0.02
875 151 0.03
876 63 0.01
877 4 0.00
878 3 0.00
879 126 0.03
880 37 0.01
881 9 0.00
882 4 0.00
883 4 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 4 0.00
889 82 0.02
890 410 0.09
891 218 0.05
892 96 0.02
893 2 0.00
894 5 0.00
895 41 0.01
896 413 0.09
897 61 0.01
898 174 0.04
899 141 0.03
900 5 0.00
901 8 0.00
902 46 0.01
903 143 0.03
904 121 0.03
905 150 0.03
906 81 0.02
907 112 0.03
908 160 0.04
909 366 0.08
910 16 0.00
911 27 0.01
912 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGCACCATCGCCGGAGCATCATCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTAAACCTCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
CCTGTCTCTCTGGCCGACGTAGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5581804 original size:491 final size:490
Alignment explanation
Indices: 5580853--5581822 Score: 1600
Period size: 491 Copynumber: 2.0 Consensus size: 490
5580843 GGGGTGTGCG
*
5580853 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
5580918 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
66 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
* * *
5580983 GTGTTTGAAATCGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
131 GTGTCTGAAATCGGGACAGTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCT
** * * **
5581048 GAATTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTTC
196 GAATTTTTTGTGCATCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACGCC
* * *
5581113 ATCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
261 ATCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
* * *
5581178 GAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCAATGAATTTACAAGCCAT
326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTCAATGAATTTACAAGCCAA
* * *
5581243 GAAAATGGCATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
391 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
5581308 ACGGCTTACACATCCTGTCTCTCTTCGTCGGGGTA
456 ACGGCTTACACATCCCGTCTCTCTTCGTCGGGGTA
5581343 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
5581408 TGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAA
66 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
* *
5581473 GTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAGTTTTTAGCT
131 GTGTCTGAAATCGGGACAGTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCT
*
5581538 GAATTTTTTTGTGCTTGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACG
196 GAA-TTTTTTGTGCAT-CAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACG
* * ** *
5581602 CCTTCCAAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
259 CCATCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
**
5581667 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCC
324 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTCAATGAATTTACAAGCC
5581732 AAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
389 AAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
5581797 CCACGGCTTGCGCATCCCGTCTCTCT
454 CCACGGCTTACACATCCCGTCTCTCT
5581823 GGCCGGCGTA
Statistics
Matches: 443, Mismatches: 35, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
490 189 0.43
491 219 0.49
492 35 0.08
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (490 bp):
CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATCGGGACAGTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCT
GAATTTTTTGTGCATCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACGCC
ATCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTCAATGAATTTACAAGCCAA
AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTACACATCCCGTCTCTCTTCGTCGGGGTA
Found at i:5582087 original size:25 final size:26
Alignment explanation
Indices: 5582036--5582087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5582026 GTTGACTTAG
5582036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5582062 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5582087 G
1 G
5582088 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5583989 original size:26 final size:26
Alignment explanation
Indices: 5583953--5584005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5583943 GTTGACTTAG
*
5583953 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
5583979 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
5584005 G
1 G
5584006 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCACAGTCTAA
Found at i:5584878 original size:26 final size:26
Alignment explanation
Indices: 5584849--5584901 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5584839 GTTGACTTAG
* *
5584849 GCATACAAAGTTTATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
5584875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
5584901 G
1 G
5584902 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:5585540 original size:903 final size:885
Alignment explanation
Indices: 5583789--5589274 Score: 6192
Period size: 903 Copynumber: 6.1 Consensus size: 885
5583779 ATTGGTTTAT
* ** * * * *
5583789 CTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATGGGATCAGACCGAGGGTTGCAGCAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * *** ** * *
5583854 AGGTAGCATACAGAGGGGGACGT-GACCGATCCCCGGCTTGCGCAGCCCGCCCCTCTGGCCGGCT
66 CGGCAGCACGTAGAGGGGGAC-TCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * *
5583918 GAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC--AT--A---CGTT---AG-CT-AGCAT
* * * * *
5583983 ATGGAGTTCATTCACAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCG
183 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * ** * * *
5584048 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAAGCT
247 AGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
*
5584113 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGAT
312 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGAT
*
5584178 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCAAGAACTCTCACC
377 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * * *
5584242 CTCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACGAGTAGCCATTAAAGTGTATGAAATGGG
442 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
5584307 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
507 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * *
5584372 ATGCAAAAAAAAAATACAAGGATCACACCTACCAAG-TTGGGGCCAAAAATCCTTCCTAAAAAAT
572 ATGC-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAAT
** *
5584436 TTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
635 TTTAAAAAATCCCGAA-CAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5584500 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
699 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5584565 TGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
764 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5584630 ATCCCATCTCTCTAGTCGACGTAGTG-C-CCGCCCGTCCGCTCGTTTCGTCGGTTGG
829 ATCCCGTCTCTCTGGTCGACGTAGTGCCGCCGCCCGTCCGCTCGTTTCGTCGGTTGG
* * * * *
5584685 CTTAGGCTTACGGACTTCATTCCCAGTCTAAGATCAGACCGGA-TGAAGGGTTGCGATAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTGCGGTAGCAGGA
* * * * * **
5584749 TCGGCAGCACGCAGAGGGCGACGCGGTCGATCCTCGGCTTTCGCATCTAGCCCCTCTGGCCGGCT
65 TCGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* *
5584814 GAGCGCCGGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCTAGTCTAAGCAT
130 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC---G-----T--TAG-CT-AGCAT
** * ** * *
5584879 ACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGTGGCAACACATGCTGGGATCG
183 ACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * *
5584944 AGCATGTGCTGG-ACCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTGGAGAACCT
247 AGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * **
5585008 GACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTAAGA
312 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTACGCACATGATGTGCGA
* * *
5585073 TGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTGTCCCCTTGTCCATCATCAAACCTCAAGAA
376 TGGGTGCTGGTACTTGGCCCTTATATTGG--CC----CCCC-TATCCCTCATCAAACCTCAAGAA
* *
5585138 CTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
434 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5585203 GAAATGGGGACACTTTTCTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
499 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5585268 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTTC-A
564 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGA
* * * *
5585332 AAAATATTTTAAAAAATCCCGACCAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAATGAGTT
629 AAAA-ATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
*
5585397 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAA
693 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5585462 TGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGC
758 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
5585527 TTGCGCATCCCATCTCTCTGGTCGACGTAGTG-C-TCGCCCG-CCTGCTCGCTTCATCGGTTGG
823 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCGCCGCCCGTCC-GCTCGTTTCGTCGGTTGG
* * * ** * *
5585588 CTTAGGCATACGAAGATCATTCCCAGTCTAAGATCATACTGGACCGAGGGTTGTGGCA-CTAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC-AGGA
* * * * * * *
5585652 TCAGCAGCACATAGAGGGGGAC-CTGGTCGTTCCCCGACTTGCGCATCCCGCCTCTCTGGCCGAC
65 TCGGCAGCACGTAGAGGGGGACTC-GGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
* *
5585716 TGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACG---G--AG--T-----G--CAT
129 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTTAGCTAGCATACGGAGTTCAT
* * * *
5585767 TCCCAATCTAAGATTGAACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
194 TCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTG
* * * * *
5585832 GTGCCGCATTTTTCTTCACCGGGGCACCATGGTCGGAGCATCGCCGGAGAACCTGA-TGAACGGC
258 GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG-GCGGC
* * * * ** * *
5585896 ATTGGGGTTCAGGCGATCGTGGGGGCCGAGGGGGTGTGTGCACATGATGTGTGATGGATGCTGGT
322 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGT
* *
5585961 ACTTGGCCCTTATATTGGCCCCCC-ATCCCTCATCAAACCTCGAGAACTCAGC-CCCCCATAAAG
387 ACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCA-CACCCCCTTAAAG
* * * *
5586024 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGCTGAAATGGGGATAGTTGT
451 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
5586089 TTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTGAATTTTTTTGTACATGCCAACA
516 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
5586154 AAAATACAAGGATCACGTCTACCAAGTTTGGGCTCGAAACT-CTTGCCGAAAAAAGTTTT-AAAA
581 AAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTT-CCGAAAAAA-TTTTAAAAA
* * ** * * *
5586217 ATCTCGAACTGCAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAGTCGTCTTGCTATGAAAC
643 ATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
5586282 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTA
708 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
5586347 GAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCGACGGCTTGCGCATCCCGTCT
773 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * *
5586412 CTCTGGCCGACGTAGTGCCCGCCCGTCCACCCGCTCGTTTTGTCAGTTGG
838 CTCTGGTCGACGTAGTG-CCG-CCGCCCGTCCGCTCGTTTCGTCGGTTGG
* * * * * *
5586462 CTTAGGCATATGGAGTTCATTCCTAGTCTGAGATCAGACCAGACCGATGGTTGTGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * * *
5586527 CGTCAGCATGCAGAGAGGGACTCGG-CTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
66 CGGCAGCACGTAGAGGGGGACTCGGTC-GATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * *
5586591 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAGCGT
130 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC---G----TT---AG-C-TAGCAT
* **
5586656 ACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
183 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* ** * * * *
5586721 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCAGAGAACCT
247 AGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
5586786 GACCGGCGGCGTTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCAAATGATGTTGCGG
312 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATG-TGC-G
* *
5586850 ATGGGTGCTGG-ACTTGGGCCCTTATATTGG-TCCCCTATCCCTCATCAAACCTTGAAGAACTCA
375 ATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCCTATCCCTCATCAAACC-TCAAGAACTCA
* * *
5586913 CACCCCCTTAAAGAGGCATTTGACATTTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGA
438 CACCCCCTTAAAGA-GCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5586978 AATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCTACACTTTGA-TTTTTAGCTGAATTT
501 AA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTT
* * * *
5587042 TTTGTGTGCATGCCAATAAAAACAGAAGGATCACGGTCTACCAAGGTTTGCTCGGCGAAAACCTC
564 TTT-TGTGCATGCCAAAAAAAATACAAGGATCAC-GTCTACCAA-GTTTG--GGGC-AAAA---C
* * *
5587107 TCCTT-CGAAAAAATTTTAAAAAATCCTGAACCCGTAAAAAGTTTTGGAAAAT-A-GTAGAAAAT
620 TCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CAGCAAAAAGTTTT-GAAAATCATG-A-AAAAT
* * * *
5587169 AGGAAAATGAGTCATC-TGCCATTGAAACTCCCACGTGAAGGCCTTAAGGGACCATTGTATAAAT
681 A-GAAAACGAGTCGTCTTGCCA-TGAAACT-TCACGTGAAGG-CTTAAGGGACCATTGTATGAAT
* * * *
5587233 TTAGAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTACCTAAACCCACCTACAAC
742 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
5587298 CCTATCGATCCACGGCTTGCGCATACCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCTGCCCGT
807 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT----G-CCGCC-GCCCGT
* *
5587363 CCGCTCATTTCGTCGGTTAG
866 CCGCTCGTTTCGTCGGTTGG
* ** *
5587383 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * *
5587448 TGGCAGCACGTAGAGGGGGACTCGGTCGATCCCTGGCTTAAGCATCCCGCCCCTCTGGCCGGCTG
66 CGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
* * *
5587513 AGCGCTCGTACGCTCGTTTCGT-GG--G--TT--G---AC-TTA--T-GCATACGAAGTTCATTC
131 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTTAGCTAGCATACGGAGTTCATTC
* *
5587564 CCAGTCTAAGATCGGACC-ACCGAGTGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGT
196 CCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGT
* * *
5587627 GCCACATTTTTCTTCACCGGGTCACCATCGCCAGG-CCATCGTCGGAGAACCTGACCGGCGGCAT
260 GCCGCATTTTTCTTCACCGGGGCACCATCGCC-GGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * *
5587691 TGGGGTTTCGGTGATCGAGAGGCCGGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTG
324 TGGGG-TTC--CGA-C--GA-TCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTG
* * * *
5587755 CTGGTACTTGGTCCTTATATTGG--CCCCTGTCCCTCACCAAACCTCAAGAACTCA-AACCCCTT
382 CTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
5587817 AAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
447 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
5587882 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAAGTTTTTTGTACATGCA
512 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
5587947 AAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
577 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
5588012 AAATCTCAAACTGTAAAAAGTTTTGAAAATCA-GAAAAAATAGAAAACGAGTCGTCTTGCCATGA
641 AAATCCCGAACAGCAAAAAGTTTTGAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5588076 AACTTCATGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
705 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
5588141 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
770 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
5588206 TCTCTCTGGACGACGTAGTGCCCGCCTGCCGTCCGTCCCGCTCGTTTCGTCGGTTAG
835 TCTCTCTGGTCGACGTAGTG-CCGCC-G-C--CCGT-CCGCTCGTTTCGTCGGTTGG
** * *
5588263 CTTAGGCAT-CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * *
5588327 TGGCAGCACGTAAAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTG
66 CGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
* * *
5588392 AGCGCTCGCACGCTCGTTTCGT-GG-T---TT--G---AC-TTA-C--GCATATGAAGTTCATTC
131 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTTAGCTAGCATACGGAGTTCATTC
*
5588443 CCAGTCTAAGATCGGACC-ACCGAGTGTTACGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGT
196 CCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGT
* * ** * * * *
5588506 GCCGCATTTTGCTTCACCGGGTCACCATCGCCACACCATCGTCAGAGAACCTGACTGGCAGCATT
260 GCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
** **
5588571 GGGGTTCCGGTGATCGAGGGGCCGGGGGGCCGGGGGTGGTACGCACATGATGTGCGATGGGTGCT
325 GGGGTTCCGACGATCG-GGGG--GGCCGG--GGGGGT-GTACGCACATGATGTGCGATGGGTGC-
* *
5588636 TGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTTGAA-AA-TCAGACCCCCTT
383 TGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACC-TCAAGAACTCACACCCCCTT
*
5588699 AAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTATAGTAGCCAATTAAAAGTGTCTGAAATG
447 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-----AGTAGCC-ATT-AAAGTGTCTGAAATG
* *
5588764 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGC
505 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
5588828 GCATGCC-AAAAAAATACAAGGATCA-GTCTACCAAGTTTGGGCCAGAAA-TTCTTCCGAAAAAA
570 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCA-AAACTCCTTCCGAAAAAA
* * * * *
5588890 TTTTAAAAAAT-CCGAACGGTAAAAAGTTATCAAATATCATGAAAAATAGAAAACGAGTCATCTT
634 TTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAA-ATCATGAAAAATAGAAAACGAGTCGTCTT
*
5588954 GCCAATGGAAACTTCACGTGTAAGGCTTTAA-GGACCATTGTATGAATTTTACAAGCCAAAAAAA
698 GCC-AT-GAAACTTCACGTG-AAGGC-TTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAA
* * * *
5589018 TGG-AATGGCCAATGGCAAAAAATATGAAGATGTGCCTAAAACCCAGCTAACAACCCTCTATCGA
758 TGGCATTGG-C-AT-GC-AGAAATATGAAGATGTGCCT-AAACCCACCT-ACCA-CC-CTATCGA
* * *
5589082 TCCACGGCTTGCACATCTCGTACTCTCTGG-CGACGTAAGTGCCGCTCGCCCGCGCCCGCTCGTT
815 TCCACGGCTTGCGCATCCCGT-CTCTCTGGTCGACGT-AGTGCCGC-CG-CC-CGTCCGCTCGTT
5589146 TCGTCGGTTGG
875 TCGTCGGTTGG
* * *
5589157 C-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCAGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* ** * *
5589221 CGGTAGCACAAAG-GGGGGACCCGG-CTGATCCCCGGCTTGCGCATCCCGCCCCTC
66 CGGCAGCACGTAGAGGGGGACTCGGTC-GATCCCCGGCTTACGCATCCCGCCCCTC
5589275 NNNNNNNNNN
Statistics
Matches: 3973, Mismatches: 447, Indels: 343
0.83 0.09 0.07
Matches are distributed among these distances:
869 186 0.05
870 204 0.05
871 13 0.00
872 2 0.00
873 7 0.00
874 157 0.04
875 8 0.00
876 11 0.00
877 110 0.03
878 85 0.02
879 313 0.08
880 174 0.04
881 12 0.00
882 76 0.02
883 20 0.01
884 40 0.01
885 78 0.02
886 24 0.01
887 43 0.01
888 41 0.01
889 97 0.02
890 12 0.00
891 36 0.01
892 73 0.02
893 189 0.05
894 95 0.02
895 129 0.03
896 307 0.08
897 33 0.01
898 26 0.01
899 30 0.01
900 179 0.05
901 42 0.01
902 31 0.01
903 420 0.11
904 197 0.05
905 49 0.01
906 34 0.01
907 9 0.00
908 5 0.00
909 1 0.00
910 4 0.00
911 6 0.00
912 19 0.00
913 15 0.00
914 18 0.00
915 18 0.00
916 12 0.00
917 123 0.03
918 1 0.00
920 4 0.00
921 154 0.04
922 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (885 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
CGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTTAGCTAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
CCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC
GACGTAGTGCCGCCGCCCGTCCGCTCGTTTCGTCGGTTGG
Found at i:5591533 original size:26 final size:26
Alignment explanation
Indices: 5591482--5591534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5591472 CCGGTTCGAT
* *
5591482 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5591508 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5591534 C
1 C
5591535 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5592058 original size:894 final size:892
Alignment explanation
Indices: 5590605--5593315 Score: 3514
Period size: 894 Copynumber: 3.0 Consensus size: 892
5590595 CCCATCCGAT
* * * ** *
5590605 CTTAGGCTGGGAATGAACTCCATATGCCTATGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC-AG
* * * * ** *
5590670 CAGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTTTGTGTGCTGCCGATCC
65 CAGCC-GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * * *
5590735 TGCTGCCGCAACCCTCAATCCGGTCTGATCTTACACTGAGAATGAACTCCGTATGCCTAAGCAAA
129 TGCTGCCGCAA-CCTTAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
* * ** * *
5590800 CCATTAAGATC-AACACGAGCGAGTTGACGGGCGGTGCGGGGACTACG-CTGGCCTAGAGAGACG
193 CC-----GA-CGAA-ACGAGTGGGAGGGCGGGCGG-GCGGGCACTACGTC-GGCC-AGAGAGACG
* *
5590863 GGATCGCAAGCCGTGAATCGATA-GGTGGTAGGTGGGTTTTAGGCACATCTTTATATTTCTGCGT
248 GGATCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGC-T
*
5590927 TCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCGTCT-TTAAAGCCTTCACGTGAAGTT
311 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG-GTCTCTT-AAGCCTTCACGTGAAGTT
**
5590991 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGGCGGTTCGGGATTT
374 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGGGATTT
*
5591056 TTTAAAATTTTTTTGGAAGGTGTTTTCAGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
438 TTTAAAATTTTTTTGGAAGGAGTTTT-AGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
* * *
5591121 GGCATGCACAAAAAATTTCAGCTAAAAACTCGATGTCTACAAGATTTTGTGACCATTTGAAAAAA
502 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
5591186 GTGTCCCCATTTCAGACACTTCAATGGCTACAGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT
567 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
5591251 AAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
632 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
5591316 ACCCATCGCACATCATGTACGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGT
697 ACCCATCGCACATCATGTACGCACACCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGT
* * * *
5591381 CGGTCAGGTTCT-C-CG-G-T-GATGGTGCCCCGGTGAAGAAAAATACGGCTCTAGCACATGCCC
761 CGGTCAGGTTCTCCACGAGCTCGATGGTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCC
** *
5591441 GAGCCTTGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTA
826 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTACGTA
5591506 TG
891 TG
* *
5591508 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-
* ** *
5591573 CAGCCGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCTACCTCTACGTGCTATCGATCCT
65 CAGCCGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCT
*
5591638 ACTGCCGCAATCCTTAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAAC
130 GCTGCCGCAA-CCTTAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAAC
* * * *
5591703 CGACGAAACGAGTGGGCGGGCGGGCGGGCAGGTACTACGTCGGCCAGAGAGACAGGATGCGCAAG
194 CGACGAAACGAGTGGGAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT-CGCAAG
*
5591768 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TGCCAATGCCAT
* *
5591833 TTTTATGGCTTGTAAATTTATACCATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
5591898 GCTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTGTACGGTTCGGGATTTTTTTAAATTTTTTT
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTT
* * * **
5591963 TGTAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
451 TGGAAGGAGTTTTAG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
5592028 AAATTAAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
5592093 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAA
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
5592158 TTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCTATCGGACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
5592223 CATGTACGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
710 CATGTACGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
* * * * * *
5592288 GACGATGCTCCGATGGTGGTGACTCGATGAAGAAAAATGCGACACCAGCAAATGTCCAAGCCCAG
775 -ACGA-GCT-CGA---TGGTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAG
* * *
5592353 CATGTGCTGCAGCAACCCTCGGTCTGGTCTCCGTATGCTTAGACT-GGAATGAACTCCGTATG
834 CATGTGCTGCCGCAACCCTCGGTCCGGT-T-CG-AT-CTTAGACTGGGAATGAACTACGTATG
* *
5592415 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
5592480 CGACTAGAGGGGCAGGATGTGTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCC
66 AG-C-CGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* *** * * * * * * *
5592545 TGCTACTATAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACT-CTGTATGCCTAAGTCG
129 TGCTGCCGCAACCTTAG-TCCGGTCAGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGCCA
* * *
5592609 ACCGACGAAATGAGTGGGAGGGTAGGG-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGT
192 ACCGACGAAACGAGTGGGAGGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT-CGC
* * *
5592673 AAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTATCTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCTGCCAATGC
* * * **
5592738 CATTTTTTTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGATAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
5592803 ATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
5592868 TTCGGAAGGCA-TTTTTG-CCAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
449 TTTGGAAGG-AGTTTTAGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * *
5592931 AAAAATTCAGCTAAAAACTCAAAGTGTACAACATTTTGTGACAATTTGAAAAAGGTGTCCCTATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5592996 CCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
5593061 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATTGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
5593126 ATCATGTGA-GCACA--CCCCCTGCCCCCCCGATCATCGGAACCCCAATGTCGTCGGTCAGGTTC
708 ATCATGT-ACGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTC
* *
5593188 TCCAGCGATGCTCCGACGATGGCGCCCCGATGAAGAAAAATACGACACCAGCACATGCTCGAGCC
772 TCCA-CGA-GCT----CGATGGTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCC
* *
5593253 CAGCATGTGCTGCCACAACCCTCGGTCCGG-TCTGATCTTAGAGTGGGAATGAACTACGTATG
831 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTACGTATG
5593315 C
1 C
5593316 CTAAGCCAAC
Statistics
Matches: 1582, Mismatches: 189, Indels: 77
0.86 0.10 0.04
Matches are distributed among these distances:
893 56 0.04
894 347 0.22
895 93 0.06
896 32 0.02
897 4 0.00
898 1 0.00
899 8 0.01
900 20 0.01
901 4 0.00
902 108 0.07
903 179 0.11
904 63 0.04
905 232 0.15
906 8 0.01
907 109 0.07
908 314 0.20
909 4 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
AGCCGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTG
CTGCCGCAACCTTAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCG
ACGAAACGAGTGGGAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA
GGAGTTTTAGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTA
CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCACGAGC
TCGATGGTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTACGTATG
Found at i:5592415 original size:25 final size:26
Alignment explanation
Indices: 5592381--5592441 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 26
5592371 TCGGTCTGGT
5592381 CTCCGTATGCTTAGACT-GGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
5592406 CTCCGTATGCTTAGACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
*
5592432 CTCCATATGC
1 CTCCGTATGC
5592442 CTAAGTTAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 17 0.50
26 17 0.50
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTGGGAATGAA
Found at i:5594028 original size:26 final size:26
Alignment explanation
Indices: 5593999--5594051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5593989 CCGATCCGAT
5593999 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
5594025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
5594051 C
1 C
5594052 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:5594943 original size:26 final size:26
Alignment explanation
Indices: 5594907--5594959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5594897 CTGGTCCAAT
5594907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5594933 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5594959 C
1 C
5594960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5595836 original size:26 final size:26
Alignment explanation
Indices: 5595800--5595852 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5595790 ATGGGTCGAT
*
5595800 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5595826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5595852 C
1 C
5595853 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5596726 original size:26 final size:26
Alignment explanation
Indices: 5596697--5596747 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5596687 GGTCTGATCT
*
5596697 TAGACTGGGAATGAATTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
5596723 TAGACTGGGAATGAGCTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
5596748 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:5598538 original size:26 final size:26
Alignment explanation
Indices: 5598502--5598554 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5598492 CCGGTCCGAT
*
5598502 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5598528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5598554 C
1 C
5598555 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5598607 original size:900 final size:899
Alignment explanation
Indices: 5593260--5600382 Score: 9142
Period size: 900 Copynumber: 7.9 Consensus size: 899
5593250 GCCCAGCATG
* *
5593260 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGAGTGGGAATGAACTACGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5593325 CCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCTCTACGTCGACCAGAGAGACGGGATGCGCAA
66 CCGACGAAAC--G-A-GCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** * *
5593390 GCTGTGGATCGATAAGGTGGTAGGAAGGTTTAGGCACATCTTAATATTACTGCATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
5593455 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
5593520 GACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * * * * *
5593585 TGGAAGGTGTTTTGGCTCGAAACTTGGTAGACGTAACCCTTGTATTTTTGTTGGCATGCAAAAAA
322 TGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAA
** * * *
5593650 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATAATTTGAAAAAGGTGTCCCAATTC
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
5593715 CAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
5593780 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT------ACCCATTGCACA
516 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
5593839 TCATGTGCGCACA-CCCCC--CACCCCCGATCGTCGGAACTCTAATGCCGTCGGTCAGCTTCTCC
581 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
5593901 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
646 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
5593966 CATGTGCTGCCGCAATCCTCGATCCGATCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGA
711 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
5594031 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCAGGCGCTCAGTCGGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
5594096 GAGTGGCGGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTCCTGTCGATCC
841 GAGGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * ** *
5594155 TACTGCCACAACCCTCATTCTGATCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
5594220 CCAACGAAACGGGTGGGCGGGCGGACGGGCTGGTGGGCACTACGTCGGTTAGAGAGACGGGATGC
66 CCGACGAAACGAGCGGGC--G-GGA-GGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGC
* **
5594285 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
123 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
** * * *
5594350 GAAATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAA
188 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** **
5594415 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGAATCGGGATTTTTTAAAATT
253 AGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* *
5594480 TTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGA-CCTTTGTATTTTTGTTGGCATGCA
318 TTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCC-TTGTATTTTTGTTGGCATGCA
* * * * *
5594544 CACAAAAATTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTATCCCC
382 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
5594609 ATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGT
447 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
5594674 GTGAGTT-TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCA
512 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
5594738 CACATCATGTGCGCACACACCCCGCCGG-CCCCCCAATCG-CTGGAACCCCAATGCCGTCGATCA
577 CACATCATGTGCG--CACACCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCA
* ** * * *
5594801 GGTTTTCCGGTGATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCC
638 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* ** * *
5594866 GAGCCCAGGATGTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA
703 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
5594931 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCA
768 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** ** ** * * *
5594996 GCCGGCCCGAGGGGCAGGATGTGCAAGCCAAGGATCGATCGGGTCGCCCTTTGCGTGCTGCTGAT
833 GCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
*
5595061 CT
898 CC
* * * * * * * *
5595063 TGTTACCACAACCCTTGGTCTGATCTGATCTAACACTGGGAATGAACTCCGTATGCGTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
5595128 CCGATGAAACGAGCGGGTGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGC----GGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
5595193 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
5595258 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGAA
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
5595323 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTC
257 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** * * * * * *
5595388 T-GATGGAGTTTTAGTCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAG
322 TGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
5595452 AAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
5595517 A-ATCACTTTAATGGCTAGTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGA
452 AGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
5595581 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAACTACCAGCACCCATCGCACA
516 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
5595646 TCATGTGTGCACA---------CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
581 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * **
5595702 GACGATGCTCCGGCAATGGTACCCCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
646 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ** *
5595767 CATGTGCTACCGCAAGCCTCGATATGGGT-CGATCTTAGATTGGGAATGAACTCCGTATGCTTAG
711 CATGTGCTGCCGCAACCCTCGGT-CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
5595831 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
5595896 AGAGGGGCGGGATACGCAAGCTGGGGATCGGCCGGGTCCCCCTATGCATGCTGCCGATCC
840 AGAGGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * ** * **
5595956 TGCTGCTGCAACCCTCGGCCCAGTCCAATCTTAGACTGGGAATGAAGTCCACATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
5596021 CCCACGTAACGAGCGGGC----GGGCGGGAACTACACCGGCCAGAGAGACGGGATGCGCAAGCCA
66 CCGACGAAACGAGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
5596082 TGAATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
5596147 TATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
5596212 CGTTTTCTATTTTTCACGATTTTTCAAAACTTTTTGAGGTTCAGGATTTTTTAAAATTTTTTTGG
261 CGTTTTCTATTTTTCATGATTTTT-AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
* ** *
5596277 AAAGAGTTTTGGGCCCAAACTTGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAGAAAAC
325 AAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA-AAAAA
* * *
5596341 ATTCAGCTAAAAACTCGAAGAGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
5596406 ACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
5596470 CTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCC
519 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
5596535 TGTGCGGACACCCCCCGACCCCCCCAATCGTCGGAACACCAATGCCGCCGGTCAGGCTCTTC-AG
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* ** * * * **
5596599 TGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCAGCTCCAGCACATGCTGGAGCCCAGCA
648 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
5596664 TGTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCATAGACT
713 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
5596729 GGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA
778 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * * *
5596794 GGGGCGGGATACGTAAACCGGGGATCGATCGGGTCCCCCACTACGTGCTGTCGATCC
843 GGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
5596851 TGCTGCCACAACCCTCGGTCCGATCCCATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
5596916 CCGATGAAATGAGCGGGCCGACGGGCGGGCGGGCACCACG-CTGGCCACAGACACAGGAGGCGCA
66 CCGACGAAACGAGC-GG--G-CGGGAGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* * * * *
5596980 AGTCATGGATCAATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCGATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
5597045 ATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5597110 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTCTTGCGGTTTGGGATTTTTTTTAAAATTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGA--TTTTTTAAAATTT
* * * ** *
5597175 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAATGATCCTTGTATTTTTGTTGGCATTTATA
319 TTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * *
5597240 AAAAAATTCAGCCAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAT
384 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
5597305 TTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGATCTTTAATGGGGTGT
449 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
5597370 GAGTTC---AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACTCGCATGC
514 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-C-CAT-C
* * *
5597432 GCA-ATCATTGTG-GCACACACCTCGGCTCCCCCGA-CG-CTGGATACCCCAATGCCGCCGGTCA
576 GCACATCA-TGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGA-ACCCCAATGCCGCCGGTCA
* * ** *
5597493 GGTTCTCCGGCGATGCTTCGGCGATGGTGCCGCCGGTGAAGAAAAAATGCAGCACCGAGCACAAT
638 GGTTCTCCGACGATGCTCCGGCGATGGTGCC-CCGACGAAG-AAAAATGCGGCACC-AGCAC-AT
* * * * * *
5597558 G-CCGCGCCCAGACATATGCTGCCGCAACCCTCGGTCCGATCTGATCATAGATTGGGAATGAACT
699 GCCCGAGCCCAG-CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
5597622 CCTTATGCTTAGACTGAGAATGAACTCCATCTGCCTAAGTCAACCCACGAAACGAGCGTACGAGC
763 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * ** * *
5597687 GCTCAATCGGCCAG-GGGGCGGGAT-CTGCAAGCTGGGGATCGGCCGGGTCAACCTTTACGTGCT
828 GCTCAGCCGGCCAGAGGGGCGGGATAC-GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* *
5597750 GCAGATCT
892 GCCGATCC
* * * *
5597758 TGCTACCGCAACTCTCGGTCCGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAAG-CAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
5597822 CGGATGAAACGAGCGGGCGGGAGGGCGGGCACTACGTCGGCTAGAGAGATGAAATGCAG-AAGCC
66 CCGACGAAACGAGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC-GCAAGCC
* * * *
5597886 GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATCCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
5597951 TTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTGATGGCAAGACGA
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGA
* * * *
5598016 CTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGTGGTTCGGGATTTTGTAAAATTTTTTTA
259 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
*
5598081 GAAAGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAA
324 GAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
5598145 ATTCAGCAAAAAACTTGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
5598210 ACACTTTAATGGCAATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
5598275 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
519 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
5598340 TGTGCGCACACCCCTCCGGCCCCCTCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
584 TGTGCGCACACCCC-CCGGCCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
5598405 ACGATGCTCTGGCAATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGC
647 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
5598470 ATGTGCTACTGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
712 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
5598535 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
777 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
5598600 AGGGGCGGGATGCGCAAGCCGGTGATCGGCCGGGTCCCCATTTACATTCTGCCGATCC
842 AGGGGCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
5598658 TTCTATCACAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
5598723 CCGACGAAACGAGCGGGC-GGACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCC
66 CCGACGAAACGAGCGGGCGGGA-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
5598787 GTGGATCGATATGGTGGTAAGTGGCTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
5598852 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGACAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
5598917 TCATTTTCTATTTTTCAGGATTTTTAACACTTTTTGCGGTTTGGGA-TTTTTAAAA-TTTTTTCG
260 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
* * * *
5598980 AAAGGAGTTTTGGGCCCAAACATGGTAGACATGATCCTTGTATTTTTCTTGGCATGCATAAAAAA
325 AAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
5599045 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
5599110 ACACTTTAATGGCTACTGGTAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
5599175 CGTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCAGCCATCACACATCA
519 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
5599240 TGTGCGCACACCCCCACCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCG
584 TGTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * *
5599305 GTGATGCTCCGACGATGGTGCCTCGAC-AGAGAAAATTGCTGCACCAGCACATGCCCGAGCCCAG
647 ACGATGCTCCGGCGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * ** *
5599369 CATGTTCTACAGCAACCTTCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
711 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
5599434 CTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCGGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** ** * * * * *
5599499 GACAGATGGGATGA-ACAAGCTGGGGATCTGTCGGGTCCCCCTCTGCATGCTGCCGATCC
841 GAGGGGCGGGAT-ACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
5599558 TACTGCCATAGCCCTCGGTCTGGTTTGATCTTAGACAGTGAATGAACTCAGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
5599623 CCGATGAAACGAGCGGACGGGCGAACGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGC-GG-G-A-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
5599688 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
5599753 -TTTCATGGCTTCTAAATTCATACAATGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
192 TTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
5599817 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTCCCGGTTTGGGGTTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** * *
5599882 TT-GAAAGGAGTTTTCACCCCAAAC-T--TAGACGTGATCCTTGTATTTTTGTTAGCATGCACAA
321 TTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
5599943 AAAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCGCATT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
5600008 TCAGACACTTTAATGGCTACTCGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** *
5600073 AGTTCTTGAGGTTTGATGAGGGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAA
515 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
5600138 ATCATGTGCGCACACCCCCTCGACCCCCCCGATCGTCGAAACCTCAATGCTGTCGGTCAGGTTCT
580 ATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
5600203 -TGGCGATGCTCTC-GCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTACATGCCCGAGTC
644 CCGACGATGCTC-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
5600266 AAGCATGTGCTGCCGTAAACCTCTGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
708 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
5600331 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGCG
773 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
5600383 AACGGACGGG
Statistics
Matches: 5421, Mismatches: 702, Indels: 205
0.86 0.11 0.03
Matches are distributed among these distances:
885 183 0.03
886 126 0.02
887 151 0.03
888 1 0.00
889 3 0.00
891 5 0.00
893 309 0.06
894 10 0.00
895 383 0.07
896 2 0.00
897 41 0.01
898 138 0.03
899 420 0.08
900 994 0.18
901 306 0.06
902 446 0.08
903 549 0.10
904 691 0.13
905 73 0.01
906 38 0.01
907 111 0.02
908 435 0.08
909 2 0.00
910 1 0.00
912 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGA
AAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:5599438 original size:26 final size:26
Alignment explanation
Indices: 5599402--5599457 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
5599392 CCAATCCAAT
5599402 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5599428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5599454 CTTA
1 CTTA
5599458 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5600340 original size:26 final size:26
Alignment explanation
Indices: 5600302--5600354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5600292 TCGGTCCGAT
*
5600302 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
5600328 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
5600354 C
1 C
5600355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5601014 original size:741 final size:711
Alignment explanation
Indices: 5599583--5601713 Score: 2878
Period size: 741 Copynumber: 2.9 Consensus size: 711
5599573 CGGTCTGGTT
* * *
5599583 TGATCTTAGAC-AGTGAATGAACTCAGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGA
1 TGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGG
* *
5599647 ACGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
64 ACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
5599712 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTCATGGCTTCTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATAC
* *
5599776 AATGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGA
194 AAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * ** *
5599841 TTTTTGAAACTTTTCCCGGTTTGGGGTTTTTTAAAATTTTTTTGAAAGGAGTTTTCACCCCAAAC
258 TTTTTGAAACTTTTTGCGGTTCGGGGTTTTTTAAAATTTTTTTG-AAGGAGTTTTGGCCCCAAAA
*
5599906 TTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCATTTAAAAACTCGAAGTGTA
322 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATTTAAAAACTCGAAGTGTA
*
5599971 CAAGATTTTGTGAGCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACT-CGCAGC
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGC-CAGC
* *
5600035 AAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** *
5600100 CAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCTCGACCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGA-CCC
* * * * *
5600165 CCCGATCGTCGAAACCTCAATGCTGTCGGTCAGGTTCT-TGGCGATGCTCTCG-CGATGGTGCCC
579 CCCGATCATCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGGAGATGCTC-CGACGATGGTGCCC
* * *
5600228 CGGTGAAGAAAAATGCGGCACCAGTACATGCCCGAGTCAAGCATGTGCTGCCGTAAACCTCTGTT
643 C-ATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTAAACCTC---T
5600293 CGGTCCGATCTTAGACTGGGAA
704 --GT-C---C---GAC-----A
* *
5600315 TGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGT
1 TG--------AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-
** *
5600380 GCGAACGGACGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGG
56 GCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
5600445 GTGGTAGGTGGGTGTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAA
121 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAA
*
5600510 ATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
186 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
5600575 TTCACGATTTTTGAAGCTTTTTGTGGTTCGGGGTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGC
251 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGGTTTTTTAAAATTTTTTT-GAAGGAGTTTTGGC
* ** *
5600640 CCCAAAATTAGACGTGATACTTGTATTTTTGTTGGCAATTTATAAAAAAATTCATTTAAAAACTC
315 CCCAAAATTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCATTTAAAAACTC
* * * *
5600705 GAAGTGTACAAAATTTTGTGACCATTTGAAAAAAATGTTCC-CATTTCAGACACTTTAATAGCCA
379 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCGCATTTCAGACACTTTAATGGCTA
*
5600769 CTGCCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
443 CTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
5600834 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
508 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
5600899 CGGCCCCCCGATCATCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
573 CGACCCCCCGATCATCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGGAGATGCTCCGACGATGG
* * * * * *
5600964 TGCCTCACCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAAACCT
638 TGCCCCA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTAAACCT
5601029 CTGTCCGACA
702 CTGTCCGACA
* *
5601039 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGG
1 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGC----GGG
* * * * *
5601104 TGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCATGCATCGATAGGGTGGT
61 CGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
5601169 AGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTCTAAATTCA
126 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCA
5601234 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
191 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* ** *
5601299 AATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTAAAATTTTTTTGGAAGGA-CTTTGGCCCCAA
256 GATTTTTGAAACTTTTTGCGGTTCGGGGTTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAA
* * **
5601363 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
320 A-AT--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATTTAAAAACTCGAA
* * * *
5601428 GTGTACAAGATTTTGTGACCTTTTGAAAAGAGTGTCCTCATTTCAGATACTTTAATGGCTACTAG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACT-G
* * * * *
5601493 -CAGGAAACCTCTACAATCTCAAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGGTGAGG
446 CCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
5601557 GATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCGCACACCCCCCC
510 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * ** * *
5601622 GACCCCCCGATCACCGGAACC-CAAATACCGCCTATCAGGTTCTCC-GACACTGCTTCGACGATG
574 GACCCCCCGATCATCGAAACCTC-AATGCCGCCGGTCAGGTTCTCCGGAGA-TGCTCCGACGATG
5601685 GTGCCCCTATGAAGAAAAATGCGGCACCA
637 GTGCCCC-ATGAAGAAAAATGCGGCACCA
5601714 ACTTATGTTC
Statistics
Matches: 1251, Mismatches: 114, Indels: 78
0.87 0.08 0.05
Matches are distributed among these distances:
715 48 0.04
716 3 0.00
718 12 0.01
719 236 0.19
720 95 0.08
721 126 0.10
722 79 0.06
723 1 0.00
724 3 0.00
729 3 0.00
732 3 0.00
735 1 0.00
736 2 0.00
738 1 0.00
740 42 0.03
741 362 0.29
742 230 0.18
743 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGAC
GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTGCGGTTCGGGGTTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAAATTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATTTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGCCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATC
ATCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGGAGATGCTCCGACGATGGTGCCCCATGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTAAACCTCTGTCCGACA
Found at i:5601765 original size:26 final size:26
Alignment explanation
Indices: 5601736--5601790 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
5601726 GCCTAGCATG
5601736 ATGCTTAGACTAGGAATGAACTCCGT
1 ATGCTTAGACTAGGAATGAACTCCGT
* *
5601762 ATGCTTAGACTGGGAATGAACTCTGT
1 ATGCTTAGACTAGGAATGAACTCCGT
5601788 ATG
1 ATG
5601791 TCTAAGTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
ATGCTTAGACTAGGAATGAACTCCGT
Found at i:5601934 original size:95 final size:95
Alignment explanation
Indices: 5601769--5601959 Score: 337
Period size: 95 Copynumber: 2.0 Consensus size: 95
5601759 CGTATGCTTA
* * *
5601769 GACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGC
1 GACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGC
*
5601834 CAGAGGGGTGGGATGTGCAAGACGGGGATC
66 CAGAGGGGCGGGATGTGCAAGACGGGGATC
5601864 GACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGC
*
5601929 TAGAGGGGCGGGATGTGCAAGACGGGGATC
66 CAGAGGGGCGGGATGTGCAAGACGGGGATC
5601959 G
1 G
5601960 GTTGGGGCCC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.25, C:0.23, G:0.36, T:0.16
Consensus pattern (95 bp):
GACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGTGCAAGACGGGGATC
Found at i:5602742 original size:26 final size:26
Alignment explanation
Indices: 5602705--5602757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5602695 CTGATCCGAT
* *
5602705 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
5602731 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
5602757 C
1 C
5602758 CTAAGTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:5603645 original size:26 final size:26
Alignment explanation
Indices: 5603609--5603661 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5603599 TCGGTTCGGT
5603609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5603635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5603661 C
1 C
5603662 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5605445 original size:25 final size:26
Alignment explanation
Indices: 5605406--5605455 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
5605396 CAGTCCAATC
5605406 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
*
5605432 TTAGACT-GGAATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCCGTATG
5605456 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:5605445 original size:904 final size:903
Alignment explanation
Indices: 5601996--5605711 Score: 4899
Period size: 891 Copynumber: 4.1 Consensus size: 903
5601986 ATCCTACTGT
* * * *
5601996 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGGGCTGGCGGGCGGGCTGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
* * *
5602061 TACACCGGCCAGAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
5602126 CATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
* **
5602191 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* * * * *
5602256 TAGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
261 TTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* * *
5602321 TCCTTGTATTTTTGTTGGCATGCA-CAAAAACAATCAGCTAAAAAATCGAAGTGTACAAGATTTT
326 TCCTTGTATTTTTGTTGGCATGCATAAAAAAC-TTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
5602385 GGGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAGCCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * ** **
5602450 AATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGATTTTTGATGATCGATA-GGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* **
5602514 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-GCCCCCCGGCCCCCCCGATCGTT
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATC-AC
* ** *
5602578 GGAACCCCAA-TGCCGTCGGTCAGGTTCTCCGACGATGCCCCGGCGATGGTGCCCC-AGCGAAGA
583 GGAAACCCAACTATCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGA
* *** *
5602641 AAAATACGGCA-CAACACATGCCCGAGGTGAGCATGTGCTGTCGCAACCCTCGGTCTGA-TCCGA
647 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGAGTCCGA
* * * *
5602704 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTTAATC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
5602769 CACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGTCGAGATGCGTAAGCCAGGGATCGATT
777 CACGAAACGAGCGTGC-GGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTC
* ** * * * * *
5602834 GGGTCCCCTTCTGTGTGCTGCTGATCCTACTGCCGCAACCATCGGTCTGGT-TCGATCTTAGAC
841 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGAC
* * * * *
5602897 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGGAACGAGCGGGCGGGTGGGCCGACGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
* *
5602962 TACGCTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * **
5603027 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
* *
5603092 AGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* *
5603157 TTAC-AGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATT
261 TTGCGA-TTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * * * *
5603221 ATCCTTGTGTTTTTTTTGGCATGCACAAATCAA-TTCAGCTAAAAACTCGAATTGTACAAGATTT
325 ATCCTTGTATTTTTGTTGGCATGCATAAA-AAACTTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
5603285 TGTGCCCATTTGAAAAAACTGTCCCCATTTCTGACACTTTAATGGCTACTGGCAACAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
5603350 AAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
5603415 TAAGGGCCAAGTACCAGCACCCCTCGCACATCATGTGCGCACACCGCTCCCGGCCCCCCGATCGT
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATC-A
* * * * *
5603480 C-GAAACCC-CCATATCGTCGGTTAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGATGAAG
582 CGGAAACCCAAC-TATCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * ** ** *
5603543 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTACAACCCTTAGT-TCG-GTTC
646 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GAGTCC
*
5603606 GGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
710 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
5603671 CCCACGAAACGAGCGTGCGG-GC---G-C--TC--A---GCGGGATGCGTAAGCC-GAGGATCGG
775 CCCACGAAACGAGCGTGCGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGG
* ** * * *
5603723 CCGGGTCCCCCTCTGCATGCTGTGGATCTTGTTGCCGCAACCCTCAGTTCGGTCTGATCTTAGAC
839 TCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAC
* ** * * * * *
5603788 TGGAAATGAACTCTATATGCCTAATCCAATCGACGAAATGAGCGGGTGGGCGGGCGGGCGGGAAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
* * *
5603853 AATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
5603918 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCC-TGTAAATTCATACAATGGTCCCTT
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GCCTTGTAAATTCATACAATGGTCCCTT
* * *
5603982 AAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCATTTTCTA-TTTTCACGATTTTAAAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTT
* * * * * ** *
5604046 TTTGTGGTTCGAGATTTTTAAAAATTTCTTCGGAAGGCTTTTTGGTCCCAAACTTGGTAGACATG
260 TTTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* *
5604111 ATCCTTGTATTTTTGTTGGCATGC-TCAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
325 ATCCTTGTATTTTTGTTGGCATGCAT--AAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
5604175 TTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
5604240 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
5604305 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTTGATCA
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCA
* * * * * *
5604370 TCGG-AACCCTAA-TTTCGCCGATCAGGTTCTCCGACGATGCACCGGCGATGGTTCCCCGACAAA
582 -CGGAAACCC-AACTATCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* ** * *
5604433 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATGCTTGGTCTG-GTCT
645 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGAGTCC
* * * * *
5604497 GATCTTCGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACACCATATGCCTAAGTCAG
710 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * * *
5604562 CCCATGAAACAAACGTGCAAGTGCTTCGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATTGG
775 CCCACGAAACGAGCGTGC-GGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGG
* * *
5604627 TCGGGTCCCTCTCTGCATGTTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAC
839 TCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAC
* *
5604692 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
* * *
5604757 TATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
**
5604822 CATCTTCATATTTCTGCATGCCAATGAAATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
* *
5604887 AGCCTTGACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* *
5604952 TTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCC-AACTTGGTAGACGTGA
261 TTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
5605016 TCCTTGTATTTTTGTTGGCATGCATAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
326 TCCTTGTATTTTTGTTGGCATGCATAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
5605081 TGACCATTTGAAAAATGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
5605146 ACCTC-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAA-GTTTGATGAGGGATAGGGGGCCAATAT
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
5605209 AAGGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACACCTCCTTCCCGGCCCCTCCGATC
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC--CCCGGCCCC-CCGATC
* * * * * **
5605274 ACAGGAAACCCAACT-TCATCGGTCACGTTCTTCGATGATGCTCCGGTGATCATGCCCCGACGAA
581 AC-GGAAACCCAACTATCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * *
5605338 GAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-C-GCAGTC
645 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG-AGTC
* * * *
5605401 CAATCTTAGACTAGGAATGAACTCCGTATGTTTAGACT-GGAATGAACTCTGTATGCCTAAGTCA
709 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
5605465 ACCCATGAAACGAGCATGCTGGCGCTTAGCCGGCCAGAGGGGCGGGATGTGCAAGTCAGGGATCG
774 ACCCACGAAACGAGCGTGC-GGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
* * * * *
5605530 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTCCTACCGCAACCCTCAATCTGGTCTGATCTTAGA
838 GTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGA
5605595 C
903 C
* * *
5605596 TGGGAAAGAACTTCGTATGCCTAAGCCAACCGACGAAATGA------------GCGGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
* * * *
5605649 AACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGG
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
5605712 ACCATTTCAA
Statistics
Matches: 2467, Mismatches: 296, Indels: 113
0.86 0.10 0.04
Matches are distributed among these distances:
890 110 0.04
891 654 0.27
892 74 0.03
893 2 0.00
894 1 0.00
896 2 0.00
897 1 0.00
898 1 0.00
899 2 0.00
901 449 0.18
902 158 0.06
903 182 0.07
904 623 0.25
905 201 0.08
906 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
TTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
TCCTTGTATTTTTGTTGGCATGCATAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACGGA
AACCCAACTATCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGAGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTC
CCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAC
Found at i:5608480 original size:26 final size:26
Alignment explanation
Indices: 5608451--5608503 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5608441 TCAGTCCGAT
5608451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5608477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5608503 C
1 C
5608504 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5610115 original size:26 final size:26
Alignment explanation
Indices: 5610086--5610138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5610076 CCGGTCTGAT
* *
5610086 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5610112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5610138 C
1 C
5610139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5611593 original size:903 final size:881
Alignment explanation
Indices: 5609570--5611965 Score: 3194
Period size: 903 Copynumber: 2.7 Consensus size: 881
5609560 ATTTTCGCGC
* * *
5609570 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTT
1 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACAT
* * * * *
5609635 TTTACGGTTCGAGATTTTTTAAATTTTTTTCAGAAA-GTTTTTTGGCCCCAAACTAGGTAGATGT
66 TTTATGGTTCGGGATTTTTTAAA-TTTTTTC-GAAAGGTGTTTTGGCCCCAAACTTGGTAGACGT
5609699 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTT
129 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
5609763 TCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCTGTA
194 TGTGACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
5609828 AAATCTCAAATGCTCTTTAAGGTGGTGTGAATTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
258 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * **
5609893 TAAGGGGCAAGTGCCAACACCCATCGCACATCATGTGCGCACAACCCCCCGACCCCCTAATCGTC
323 TAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* *
5609958 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGATGAAGAAA
388 GGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAA
* * * * *
5610023 AATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTCGTTCCGGTCTGATCT
453 AATGCAGCACCAGCACAAGGCCGAGCCCAGCATGTGCTTCCGTAACCCTCG-TCCTGTCTGATCT
* *
5610088 TAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
517 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
5610153 GAAATGAGCGTGC-GGCGTTCAACCGACCAGAGGGGCGGGGATCGGTCGGGCCCCCTCTGCGTGC
582 GAAATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGGATCGGTCGGGCCCCCTCTGCCTGC
* * ** * * * *
5610217 TGTCGATCTTGTTGCTACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
647 TGTCAATCCTACTGCCACAACCCCCAGTCTGGCCTGATCTTAGAATGGGAATGAACTCCGTATGC
* * * * * *
5610282 CTAAGCCAATCGATGAAATGAGCGGGCAGATGGGCGGGCACTACCTCGACCAGAGAGACGGGATG
712 CTAACCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCACAACCTCGACCAGAGAGACGGGATG
* * *
5610347 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
777 CGCAAGCCATGGATCGATAGGGTGGCAGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
**
5610412 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
842 TGCCATTTTTATGGCTTGTAAAACCATACAATGGTCCCTT
* * *
5610452 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACCT
1 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACAT
* * * * * *
5610517 TTTGTAGTTCGGGATTTTTTAAAATTTTTCCAGAAGGTGTTTTTGTCCCAAACTTGGTAGACGTG
66 TTTATGGTTCGGGATTTTTTAAATTTTTTCGA-AAGGTGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
5610582 ATCCTTATATTTTTATTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
130 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
** * *
5610647 GTGAATATTTGAGAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAA
195 GTGACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
5610712 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAAGTGGCCAATAT
259 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
5610777 AAGGGCCAAGTACCAGCACCCATCGCACATC-TGTGCGCACACCCCCCCTGGCCACCCCGATCGT
324 AAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCC-CCCCGATCGT
* * *
5610841 CGGAACCCCAATGCCGTCAGTCAGGTTCTTCGACGATGCACCGACGATGGTGCCCC-AGCGAAGA
387 CGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGA-TGAAGA
* * * * * * **
5610905 AAAATGCAACACCAGAACAAGGCCGAGCCAAGCATGCGCTACCGTAACCCTCTGTCCTATCCAAT
451 AAAATGCAGCACCAGCACAAGGCCGAGCCCAGCATGTGCTTCCGTAACCCTC-GTCCTGTCTGAT
* * *
5610970 CTTAGACTGGGAATGAACT-TCGTGTGGTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
515 CTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* *
5611034 CCCGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCCGGGATCGGTC
579 CACGAAATGAGCGTGCGGGCGCTCAACCGACCAGA------GG--G-GC--G---GGGATCGGTC
* *
5611099 AGGTCCCCCTCTGCCTGCTGTCAATCCTACTGCCGCAACCCCC-GATCTGGCCTGATCTTAGAAT
630 -GGGCCCCCTCTGCCTGCTGTCAATCCTACTGCCACAACCCCCAG-TCTGGCCTGATCTTAGAAT
*
5611163 GGGAATGAACTCTC-TATGCCTAACCCAACCGACGAAACGAGCGGGCGGACGGGCCGGCAGGCAC
693 GGGAATGAACTC-CGTATGCCTAACCCAACCGACGAAACGAGCGGGCAGACGGG-C-G--GGCAC
** * *
5611227 AATGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTAGGTTTAGGCA
753 AACCTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTAGGTTTAGGCA
**
5611292 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAACCATACAATGGTCCCTT
818 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAACCATACAATGGTCCCTT
* **
5611356 AAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATCTTCCAAACAT
1 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACAT
*
5611420 TTTATGGTTCGGGATTTTTTGAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
66 TTTATGGTTCGGGATTTTTT-AAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
5611485 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAACTAAAGACTCGAAGTGTACAAGATTTT
130 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
5611550 GTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
195 GTGACCATTTGAAAAAAGTGTCCCCATTTAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
5611615 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATAT
259 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * **
5611680 AAGGGACAAGTACCAGCACCCATCACACATCTTGTGCGCACACCCCCCCAGCGCCCTCGATCACC
324 AAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTC
* * *
5611745 GAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCTAGCGATGCTCCGGCAATGGTGCCC
388 GGAACCCCAATGCCGTCGGTCAGGTTCT-T--C---G----A-CGATGCTCCGACGATGGTGCCC
* * *
5611810 CGATGAAGAAAAATGCGGCACCAGCAC-ATGCCTGAGCCCAGCATGTGCTTTCGTAACCCTCAGT
442 CGATGAAGAAAAATGCAGCACCAGCACAAGGCC-GAGCCCAGCATGTGCTTCCGTAACCCTC-GT
* *
5611874 -CTGGTCTGATCTTACACTGGGAACGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
505 CCT-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
5611938 TAAGTCAACCCACAAAACGAGCGTGCGG
569 TAAGTCAACCCACGAAATGAGCGTGCGG
5611966 AAACTACGCC
Statistics
Matches: 1312, Mismatches: 153, Indels: 66
0.86 0.10 0.04
Matches are distributed among these distances:
880 1 0.00
881 8 0.01
882 149 0.11
883 182 0.14
884 187 0.14
885 17 0.01
891 2 0.00
893 1 0.00
894 2 0.00
896 1 0.00
899 11 0.01
900 95 0.07
901 2 0.00
902 2 0.00
903 332 0.25
904 167 0.13
906 1 0.00
909 1 0.00
913 7 0.01
914 142 0.11
915 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACAT
TTTATGGTTCGGGATTTTTTAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
GCAGCACCAGCACAAGGCCGAGCCCAGCATGTGCTTCCGTAACCCTCGTCCTGTCTGATCTTAGA
CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
TGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGGATCGGTCGGGCCCCCTCTGCCTGCTGTC
AATCCTACTGCCACAACCCCCAGTCTGGCCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAA
CCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCACAACCTCGACCAGAGAGACGGGATGCGCA
AGCCATGGATCGATAGGGTGGCAGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
ATTTTTATGGCTTGTAAAACCATACAATGGTCCCTT
Found at i:5611913 original size:26 final size:26
Alignment explanation
Indices: 5611884--5611936 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5611874 CTGGTCTGAT
*
5611884 CTTACACTGGGAACGAACTCTGTATG
1 CTTACACTGGGAACGAACTCCGTATG
* *
5611910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAACGAACTCCGTATG
5611936 C
1 C
5611937 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAACGAACTCCGTATG
Found at i:5613535 original size:26 final size:26
Alignment explanation
Indices: 5613477--5613537 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
5613467 CCCTCGGTCC
5613477 AATCCG-AT-CTTAGACTGGGAATGA
1 AATCCGTATGCTTAGACTGGGAATGA
* **
5613501 ACTTTGTATGCTTAGACTGGGAATGA
1 AATCCGTATGCTTAGACTGGGAATGA
5613527 AATCCGTATGC
1 AATCCGTATGC
5613538 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
AATCCGTATGCTTAGACTGGGAATGA
Found at i:5614458 original size:26 final size:26
Alignment explanation
Indices: 5614407--5614459 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5614397 CCAGTCCGAT
** *
5614407 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTACATATG
*
5614433 CTTAGACTAAGAATGAACTACGTATG
1 CTTAGACTAAGAATGAACTACATATG
5614459 C
1 C
5614460 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTACATATG
Found at i:5615076 original size:899 final size:888
Alignment explanation
Indices: 5611910--5615168 Score: 3841
Period size: 911 Copynumber: 3.7 Consensus size: 888
5611900 ACTCTGTATG
* * *
5611910 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC-GTGCGGA-------
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGACGGGCGG
* * * * *
5611967 -AACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTTTA
* * *** *
5612031 GGCATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
129 GGCACATCTTCATAGTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCC
** * **
5612096 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCACGATTTTAAAAA
194 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
5612161 CTTTTTGCGGTTC-AGTATTTTTTAAAATTTTTTCGGAAGGATTTTTGTCCCCAAACTTGGTAGA
259 CTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
5612225 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGA
* * *
5612290 TTTTGTGGCCATTTGAAAAAAGTGTCCCCATT-TCAAACACTTTAGTGGCTACTGGCAGCAAACC
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTAT-AGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
5612354 TATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
5612419 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGG--CCCCCC
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCC
* * * ** * * *
5612482 GATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCGCTAGCGATGGTGCCCTGAC
581 GATCACCAGAACCCCAATTCCGTCGGTCA-G--AT---GC--T-C-CGA-CGATGGTGCCCCGAC
* ** * * *
5612547 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAAGTGCT---G-----C-C-A--CAA-
635 GAAGAAAAATACACCACCAGCACATCCCTGAGCCCAACATGTGCTACCGCAACCCTCGATCCAAT
* ** *
5612599 CC---CTT-G-GTCCG---G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
700 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
5612651 AACCCACGAAATGAGCGTGC-AGGCACTC-GACCGGCCAAAGGGGTGGGATGCGCAAGCTGGGGA
765 AACCCACGAAATAAGCGTGCGA-GCGCTCAG-CCGGCCAGAGGGGAGGGATGCACAAGTTGAGGA
* **** * ** *
5612714 TCGACCAACTCCCCCTCTGTGTGCTGCTGATCCTGCTACCGTAACGGTCAATCCGGTCTGAT
828 TCGGCTGGGTCCCCCTCTGTGTGCTGC-GATCCTGCTACTGTAACCCTCAGTCCGGTCTGAT
* * * *
5612776 CTTAGACTGAGAATGAAGTCCGTATGCCTAAGCCAAACCGACGAAACGAACGGGCGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACG-A---GCAGGCGGACGG
* * *
5612841 GCGAGCACTATGCCGACCAGAGAAACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGG
61 GCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGG
*
5612906 TTTAGGCACATCTTCATAGTTCTGCATCCCAATGCAATTTTTATGGCTTGTAAATTCATACAATG
125 TTTAGGCACATCTTCATAGTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATG
* * *
5612971 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
190 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
5613036 GAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACATGGT
255 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGT
* *
5613100 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACCCAAAGTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACA
*
5613165 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTATAGACACTTTAATGGCTACTGGCAGCAAA
*
5613230 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGCGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
5613295 CCAATATAACGGCCAAGTACCAGCACCCATCGCTA-ATCATGTGCGCACATCCCCCCCGG-CCCC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACA-CCCCCCCGGCCCCC
* * * * *
5613358 CCCGATCGCCAGAACCCCAATTCCGTCGGTCAGGTTCTCCGACGATGGTGTCCCGATGAAGAAAA
578 CCCGATCACCAGAACCCCAATTCCGTCGGTCAGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
** * *
5613423 ATACGGCACCAGCACATCCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATCCGATCTT
643 ATACACCACCAGCACATCCCTGAGCCCAACATGTGCTACCGCAACCCTCGATCCAATCCGATCTT
*** * *
5613488 AGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCAGG
708 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * *
5613553 AAACAAGCGTACGGGCGCTCAACCGGCCAGAAGGGAGGGATGCATC-AGTCGGGATGCATCAACC
773 AAATAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGAGGGATGCA-CAAGT--TGA-GGAT----C
** * * * * *
5613617 GGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCT-GTCGCAACCCTCGGTCCGGTCC
830 --GG--C--T-GGGTCCCCCTCTGTGTGCT-GCGATCCTGCTACT-GTAACCCTCAGTCCGGTCT
5613681 GAT
886 GAT
** * *
5613684 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCAAAACAAGCGGGCGAGTGGGTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-G-ACGA-AA-CGAGC-AG-GCG-GA-
* * * *
5613749 CGGGCGGGCACTGTGCCGGCCAGAGAGACGGGATGCTCAAGCCTTGGATC-ATAGGGTGGTAGGT
58 CGGGCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGT
* * *
5613813 GGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCGATTTTTATGGCTTGTAAATTCATACA
122 GGGTTTAGGCACATCTTCATAGTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACA
* *
5613878 ATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATT
187 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
5613943 TTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAACTTTTTCGAAAAGAGTTTTGGCCCCAAACTT
252 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTT
** * * * *
5614008 AATAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGT
317 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGT
* * * *
5614073 ACAAGATTTTGTGACCATTTGAAAAAACTGTCTCCATTCTAGACACTTTAATAGCTACTGGCAGC
382 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTATAGACACTTTAATGGCTACTGGCAGC
* * *
5614138 AAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
447 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
5614203 GGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
512 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* *
5614268 CCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCC
577 CCCCGATCACCAGAACCCCAAT-T--CC-GTC-GG---T-C-A-GATGCTCCGACGATGGTGCCC
* * * * *
5614333 CGACGAAGAAAAATGCACCACCAGCACGT-GCTCGAGCCCAACATGTGCTGCCGTAACCCTCGAT
631 CGACGAAGAAAAATACACCACCAGCACATCCCT-GAGCCCAACATGTGCTACCGCAACCCTCGAT
* ** *
5614397 CCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAAGAATGAACTACGTATGCCT
695 CCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
5614462 AAGTGAACCAACGAAATAAGTGTGCGAGCGCTCAGCCAGCCAGAGGGGCGAGATGCACAAGTTGA
760 AAGTCAACCCACGAAATAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGAGGGATGCACAAGTTGA
* * *
5614527 GGATCGGCTGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACTGTAACCTTCAGTCTGATCTGAT
825 GGATCGGCTGGGTCCCCCTCTGTGTGCTG-CGATCCTGCTACTGTAACCCTCAGTCCGGTCTGAT
* * * *
5614592 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGTAGGCGGACGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
* * * ** *
5614657 CACTACGCTGGCCAAAGAAATTGGATGCGCAAACCATGGATCGATAGGCTGGTAGGTGGGTTTAG
66 CACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGG-TGGTAGGTGGGTTTAG
* * *
5614722 GCACATCTTCATA-TTCTACATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTCATAGTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
5614786 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGA-TTTTCAAAA
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
5614850 TGTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCTCAAACTTGGTA-AC
260 T-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
** * *
5614914 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTGGCTAAAAACACGAAGTGTACAAGAC
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGAT
5614979 TTTGTGACCATTTGAAAAAAGTGTCCCCATTATAGACACTTTAATGGCTACTGGCAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTATAGACACTTTAATGGCTACTGGCAGCAAACCTG
5615044 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
5615109 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCAC-GCCCCCC
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCC
5615169 AGTCGCCAGA
Statistics
Matches: 2055, Mismatches: 245, Indels: 153
0.84 0.10 0.06
Matches are distributed among these distances:
866 31 0.02
867 11 0.01
868 55 0.03
869 2 0.00
870 1 0.00
871 8 0.00
872 1 0.00
873 1 0.00
876 2 0.00
877 1 0.00
878 275 0.13
879 221 0.11
880 5 0.00
881 2 0.00
884 3 0.00
885 1 0.00
886 2 0.00
889 1 0.00
892 1 0.00
893 2 0.00
894 74 0.04
895 1 0.00
896 1 0.00
897 3 0.00
899 246 0.12
900 193 0.09
901 34 0.02
902 2 0.00
903 3 0.00
904 3 0.00
905 3 0.00
906 2 0.00
907 7 0.00
908 152 0.07
909 7 0.00
910 168 0.08
911 334 0.16
912 1 0.00
913 2 0.00
914 2 0.00
915 4 0.00
916 2 0.00
919 4 0.00
920 3 0.00
921 4 0.00
922 174 0.08
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
CACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGTGGTAGGTGGGTTTAGG
CACATCTTCATAGTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTATAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATCA
CCAGAACCCCAATTCCGTCGGTCAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACACCA
CCAGCACATCCCTGAGCCCAACATGTGCTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGC
GTGCGAGCGCTCAGCCGGCCAGAGGGGAGGGATGCACAAGTTGAGGATCGGCTGGGTCCCCCTCT
GTGTGCTGCGATCCTGCTACTGTAACCCTCAGTCCGGTCTGAT
Found at i:5615228 original size:26 final size:26
Alignment explanation
Indices: 5615199--5615251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5615189 CCGGTCCGAT
*
5615199 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5615225 CTTAGACTGGGATTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5615251 C
1 C
5615252 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5616105 original size:26 final size:26
Alignment explanation
Indices: 5616067--5616119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5616057 CTGGTCCGAT
*
5616067 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
5616093 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
5616119 C
1 C
5616120 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5617759 original size:26 final size:26
Alignment explanation
Indices: 5617723--5617775 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5617713 CCGGTCCAAT
*
5617723 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5617749 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5617775 C
1 C
5617776 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.