Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 5 of 120
Found at i:437091 original size:26 final size:26
Alignment explanation
Indices: 437055--437107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
437045 GTTGACTTTG
*
437055 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
437081 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
437107 G
1 G
437108 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:437999 original size:26 final size:26
Alignment explanation
Indices: 437962--438015 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
437952 GGGGTGACTT
437962 AGCATACAGAGTTCATT-CCAGTCCTA
1 AGCATACAGAGTTCATTCCCAGT-CTA
*
437988 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
438014 AG
1 AG
438016 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:439794 original size:26 final size:26
Alignment explanation
Indices: 439754--439806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
439744 GTTGACTTAG
439754 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
439780 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
439806 G
1 G
439807 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:440242 original size:26 final size:26
Alignment explanation
Indices: 440213--440264 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
440203 AAAACTCCTT
* *
440213 CCAAAAAATGTTTCAAAAATCCTGAA
1 CCAAAAAAAGTTTCAAAAATCATGAA
*
440239 CCAAAAAAAGTTTCGAAAATCATGAA
1 CCAAAAAAAGTTTCAAAAATCATGAA
440265 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (26 bp):
CCAAAAAAAGTTTCAAAAATCATGAA
Found at i:440681 original size:26 final size:26
Alignment explanation
Indices: 440641--440696 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
440631 TGGGTTGACT
440641 TAAGCATACAAAGTTAATTCCCAGTC
1 TAAGCATACAAAGTTAATTCCCAGTC
* * *
440667 TAAGCATACAGAGTTCATTCCCATTC
1 TAAGCATACAAAGTTAATTCCCAGTC
440693 TAAG
1 TAAG
440697 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGTTAATTCCCAGTC
Found at i:441586 original size:159 final size:159
Alignment explanation
Indices: 441342--441696 Score: 424
Period size: 159 Copynumber: 2.2 Consensus size: 159
441332 CGTTTCATCA
* * * * * *
441342 GTTGGCTTAGACATACAGAGTTCATTCCTAGTCTAAGATTGAACCATTCTAAAGGTCGCAACAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAATCTAAAGGTCGCAACAAC
* * * * * * *
441407 AGGATCGGCAGTACGTAGAGGGGGACCCGGTCGATCCTCAGCTTGTGCATCTAGCCCCTCTAGCC
66 AGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGCC
** ***
441472 AGCTGAGCGCCCGCACGCTCGTTTTGTGG
131 AGCAAAGCGCCCGCACGCTCGTTTCACGG
* * * * *
441501 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAATC-GAGGGTTGCGACAA
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACC-AATCTAAAGGTCGCAACAA
* * * * *
441565 CAGGATCAGTAGAACGCAGAGGAGGACCCGATTGATCCCCAGCTTGTGCATCCCGCCCCTCTCGT
65 CAGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGC
* *
441630 CGGCAAAGTGCCCGCACGCTCGTTTCACGG
130 CAGCAAAGCGCCCGCACGCTCGTTTCACGG
441660 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
441697 CACACGGAGT
Statistics
Matches: 165, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 162 0.98
160 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (159 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAATCTAAAGGTCGCAACAAC
AGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGCC
AGCAAAGCGCCCGCACGCTCGTTTCACGG
Found at i:441827 original size:185 final size:185
Alignment explanation
Indices: 441515--441909 Score: 511
Period size: 185 Copynumber: 2.1 Consensus size: 185
441505 ACTTAGGCAT
* * * * *
441515 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGCGACAACAGGATCAGTAGAAC
1 ACGGAGTTCATTCCTAGTCTAAGATAGGACCGAACCGAGGGTTACGACAACAGGATCAGCAGAAC
* * *
441580 GCAGAGGAGGACCCGATTGATCCCCAGCTTGTGCATCCCGCCCCTCTCGTCGGCAAAGTGCCCGC
66 GCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCATCTCGTCGGCAAAGTGCCCGC
*
441645 ACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
131 ACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCAC
* * ** * ** * *
441700 ACGGAGTTCAATCCTAGTCTAAGATAGGACCGAACCGAGGGTTATGGTAGCAGGATGGGCAGCAT
1 ACGGAGTTCATTCCTAGTCTAAGATAGGACCGAACCGAGGGTTACGACAACAGGATCAGCAGAAC
* * * ** * * **
441765 GCGGAGGGGGACCCGGTCGATCCCTGGCTTGCGTATCCCGCCCATCTGGTCGGCTGAGTGCCCGC
66 GCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCATCTCGTCGGCAAAGTGCCCGC
** *
441830 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCAT
131 ACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCAC
*
441885 ACGAAGTTCATTCCTAGTCTAAGAT
1 ACGGAGTTCATTCCTAGTCTAAGAT
441910 CGGAGTGGAC
Statistics
Matches: 178, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 178 1.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (185 bp):
ACGGAGTTCATTCCTAGTCTAAGATAGGACCGAACCGAGGGTTACGACAACAGGATCAGCAGAAC
GCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCATCTCGTCGGCAAAGTGCCCGC
ACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCAC
Found at i:441892 original size:26 final size:26
Alignment explanation
Indices: 441855--441907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
441845 GTTGACTTAG
*
441855 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
* *
441881 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
441907 G
1 G
441908 ATCGGAGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:442822 original size:159 final size:159
Alignment explanation
Indices: 442578--442932 Score: 424
Period size: 159 Copynumber: 2.2 Consensus size: 159
442568 CGTTTCATCA
* * * * * *
442578 GTTGGCTTAGACATACAGAGTTCATTCCTAGTCTAAGATTGAACCATTCTAAAGGTCGCAACAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAATCTAAAGGTCGCAACAAC
* * * * * * *
442643 AGGATCGGCAGTACGTAGAGGGGGACCCGGTCGATCCTCAGCTTGTGCATCTAGCCCCTCTAGCC
66 AGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGCC
** ***
442708 AGCTGAGCGCCCGCACGCTCGTTTTGTGG
131 AGCAAAGCGCCCGCACGCTCGTTTCACGG
* * * * *
442737 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAATC-GAGGGTTGCGACAA
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACC-AATCTAAAGGTCGCAACAA
* * * * *
442801 CAGGATCAGTAGAACGCAGAGGAGGACCCGATTGATCCCCAGCTTGTGCATCCCGCCCCTCTCGT
65 CAGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGC
* *
442866 CGGCAAAGTGCCCGCACGCTCGTTTCACGG
130 CAGCAAAGCGCCCGCACGCTCGTTTCACGG
442896 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
442933 CACACGGAGT
Statistics
Matches: 165, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 162 0.98
160 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (159 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAATCTAAAGGTCGCAACAAC
AGGATCAGCAGAACGCAGAGGAGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTAGCC
AGCAAAGCGCCCGCACGCTCGTTTCACGG
Found at i:443128 original size:26 final size:26
Alignment explanation
Indices: 443091--443143 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
443081 GTTGACTTAG
*
443091 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
* *
443117 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
443143 G
1 G
443144 ATCGGAGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:443782 original size:115 final size:115
Alignment explanation
Indices: 443607--443839 Score: 340
Period size: 115 Copynumber: 2.0 Consensus size: 115
443597 AACAAGTTTC
* * * * * *
443607 GAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 GAAAATCCTGAAAAATAGAAAAAGACTCGTCTTACCAGGAAACCTCACGTGAAGGCTTAAGGAAC
* *
443672 CATTGTATGACCTTACAAGCCATAAAAATGACATTGGCACATAGAAATAT
66 CATCGTATGAACTTACAAGCCATAAAAATGACATTGGCACATAGAAATAT
* *
443722 GAAAATCGTGAAAAATAGAAAAAGACTCGTCTTACTAGGAAACCTCACGTGAAGGCTTAAGGAAC
1 GAAAATCCTGAAAAATAGAAAAAGACTCGTCTTACCAGGAAACCTCACGTGAAGGCTTAAGGAAC
* * **
443787 CATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
66 CATCGTATGAACTTACAAGCCATAAAAATGACATTGGCACATAGAAATAT
443837 GAA
1 GAA
443840 GATATGCCTA
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
115 104 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (115 bp):
GAAAATCCTGAAAAATAGAAAAAGACTCGTCTTACCAGGAAACCTCACGTGAAGGCTTAAGGAAC
CATCGTATGAACTTACAAGCCATAAAAATGACATTGGCACATAGAAATAT
Found at i:444152 original size:26 final size:26
Alignment explanation
Indices: 444113--444165 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
444103 GTTGACTTAG
*
444113 GCATACGAATTTTATTCCCAATCTAA
1 GCATACGAAGTTTATTCCCAATCTAA
* *
444139 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTTATTCCCAATCTAA
444165 G
1 G
444166 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAATCTAA
Found at i:446986 original size:899 final size:888
Alignment explanation
Indices: 444576--447075 Score: 3530
Period size: 899 Copynumber: 2.8 Consensus size: 888
444566 AGGGTTAAGG
* * *
444576 CAGCACATGCTGGGCTCGGGCA-GTGCTGGTGCTGTATTTTTCTTCACCGGGGCACTATCGCCAG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTAT--CCAG
* * *
444640 AGCATCACCGGAGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGT
64 AGCATC-GC-GAGAACCTGACCGGCGGCATTAGGGTTCCGACAATCGG-GGGGCCGGGGGGGTGT
* *
444705 GCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
126 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
444770 CCTGGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
191 CCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
444835 AAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAATTTTTTA
255 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
* * * **
444900 GCTGAATTTTTTTTTGCATGCCAATAAAAATACAGGGATCGTGTCTACCAAGTTTAGGGCCAAAA
320 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA
* * * * *
444965 CTCCTTTTGAAAAAATTTAAAAAAATCTCGAACCGCAATAAGTTTCAAAAATCTTGAAAAATAGA
384 CTCC-TTCG-AAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGA
**
445030 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGACCTTACAAG
446 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
445095 CCATAAAAATGACGTTGGCACATAGAAATAAGAAGATGTGCCTAAACCGACCTACC-CCCTATCG
511 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
445159 ATCCACA-GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCG-T--CCGCCCATTCGTTTC
576 ATCCA-AGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCCCCGCCCACTCGTTTC
* * ** *
445220 ATCAGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCTGG-CCAGACCAAGGGTTGCA
640 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACTGAGGGTTGCG
* ** * * * **
445284 ACAGCAGGATCGGCAGCACGCAGAGGGGGTCTCGATTGATCCCTGGCTTGGGCATCCCGCCCCTC
704 GCAGCAGGATCAACAGCACGCAGAGGGGGACTCGATCGATCCCTGACTTACGCATCCCGCCCCTC
* *
445349 TGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCGAG
769 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
445414 TCTAAGCACACGGAATTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCCC
834 TCTAAGCACACGGAATTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG-CC
* * *
445470 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-C---G
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCCAGAG
** * * *
445531 C--CG-GAGAACCTGACCTACAGCATTGGGGTTCCGACAATAGGGGGGCCGGGGGGGTGTGCGCA
66 CATCGCGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATCGGGGGGCCGGGGGGGTGTGCGCA
*
445593 CATGATGTGCGATGGGTGCTGGTACTTGGGCCCTTATATTGGCCCCGTATCCCTCATC-AACCTG
131 CATGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTG
445657 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
195 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
445722 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGA
260 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
* * *
445787 ATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAATTCCT
325 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCT
** * *
445852 TCCGAAAAATTTTAAAAAATCCCGAACC-ACAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
389 T-CGAAAAATTTTAAAAAATCCCGAACCGA-AAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
* *
445916 GTCATCTTGCCATCAAACTTCAC-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
452 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
445980 AAATGGCATT-GCACATAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCAC
517 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAA
* * *
446044 GGCTTGAGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCTCACCCGCCCGCTCGTTTCAT
582 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCTC-CCCGCCCACTCGTTTCAT
**
446109 CAGTTGGCTTACACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCA
642 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCA
* * * *
446174 GCAGGATCAACAGCATGCAGAGGGTGACTCGGTCGATTCCC-GACTTACGCATCTCGCCCCTCTG
707 GCAGGATCAACAGCACGCAGAGGGGGACTCGATCGA-TCCCTGACTTACGCATCCCGCCCCTCTG
* * *
446238 GCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTG
771 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
446303 TAAGTATACGGAGTTCATTCCCAGTCTAATATCGGACCGGATCGAGGGTGTG-G
836 TAAGCACACGGAATTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGT-TGCC
* *
446356 TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACTATCACAGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATC-CA-G
* *
446421 AGCATCGTCAGAGAACCTGACCGGCGGCATTAGGGTTCCGGCAATCGGGGCGGTCGGGGGGGTGT
64 AGCATCG-C-GAGAACCTGACCGGCGGCATTAGGGTTCCGACAATCGGGG-GGCCGGGGGGGTGT
* * *
446486 GCACACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGTCCCCCTATCCCTCATCAAA
126 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
446551 CCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
191 CCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
446616 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACACTTGAAGTGTTTA
255 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
* *
446681 GCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGATCAAAA
320 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAA
446746 CTCCTATCGAAAACATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
384 CTCCT-TCGAAAA-ATTTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGA
* *
446811 AAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAG
446 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
446876 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCG
511 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
446941 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTC
576 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTC-CCCGCCCACTCGTTTC
* * * *
447006 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGCG
640 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCG
447070 GCAGCA
704 GCAGCA
447076 CATGCTAGGC
Statistics
Matches: 1429, Mismatches: 138, Indels: 73
0.87 0.08 0.04
Matches are distributed among these distances:
878 36 0.03
879 88 0.06
880 50 0.03
881 25 0.02
882 182 0.13
883 56 0.04
884 61 0.04
886 56 0.04
887 220 0.15
888 7 0.00
889 2 0.00
892 3 0.00
894 23 0.02
895 31 0.02
897 61 0.04
898 53 0.04
899 273 0.19
900 21 0.01
901 51 0.04
902 51 0.04
903 79 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCCAGAG
CATCGCGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATCGGGGGGCCGGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTC
GAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCCCCGCCCACTCGTTTCATCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCA
ACAGCACGCAGAGGGGGACTCGATCGATCCCTGACTTACGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACG
GAATTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCC
Found at i:447810 original size:715 final size:713
Alignment explanation
Indices: 446308--447795 Score: 2142
Period size: 715 Copynumber: 2.1 Consensus size: 713
446298 CAGTGTAAGT
* * * * ** *
446308 ATACGGAGTTCATTCCCAGTCTAATATCGGACCGGATCGAGGGTGTG--GTAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGT-TGCAACAGCACATGC-AGGC
** * * *
446371 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACTATCACAGGAGCATCGTCAGAGAA
64 T-AAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACAGGAGCATCGCCAGAGAA
* *
446436 CCTGACCGGCGGCATTAGGGTTCCGGCAATCGGGGCGGTCGGGGGGGTGTGCACACATGATGTGC
128 CCTGACCGGCGGCATTAGGGTTCCGGCAATCGGGGCGGCCAGGGGGGTGTGCACACATGATGTGC
* * * * *
446501 GATGGGTGCTGGTACTTGGCTCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAAGTCACA
193 AATGGGTGCTGGTACTTGGCCCTTATATGGTCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
446566 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
446631 GGGACACTTTTTTCAAATGGTCACAAGATCTTGTACACTTGAAGTGTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAAGTGTTTAGCTGAATTTTTTTGT
* * * ** * * *
446696 GCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGATCAAAACTCCTATCGAAAACA
388 GCAAGCCAAAAAAAATACAAGGACCACAACTACCAAGTTTGGGACCAAAAATCCTATCGAAAAAA
* *
446761 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* ***
446826 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCAT
* * *
446891 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCAAGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACAAGGCTTGCGC
* * * *
446956 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
648 ATCCCATCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGG
447021 C
713 C
* * **
447022 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAACAGCACATGC-AGGCT
* * *
447087 CAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCA-GAGCGTCGCCGGAGAA
65 -AAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-ACAGGAGCATCGCCAGAGAA
* ** * *
447151 CCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
128 CCTGACCGGCGGCATTAGGGTTCCGGCAATCGGGGCGGCCAGGGGGGTGTGCACACATGATGTGC
*
447216 AATGGGTGCTGGTACTTGGCCCTTATACTGGT-CTCCTATCCCTCATCAAACCTCAAGAACTCAC
193 AATGGGTGCTGGTACTTGGCCCTTATA-TGGTCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
447280 ACCTCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
447345 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAAGTGTTTAGCTGAATTTTTTT
* *
447409 GTGCAAGCCAAAAAAAATACAAGGACCATAACTACCAAGTTTGGGGCCAAAAATCCT-TCCGAAA
386 GTGCAAGCCAAAAAAAATACAAGGACCACAACTACCAAGTTTGGGACCAAAAATCCTAT-CGAAA
* * * *
447473 AAATTTTAAAAAATCTCGAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATTGAGAACGAGTCGT
450 AAATTTTAAAAAATCCCGAACC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
447538 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACAAATTTACAAGCCATAAAAATT
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATG
* * *
447603 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATACACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACAAGGCTT
*
447668 GCGCATCCCATCTCTCTGGCCGACGTACTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGGTT
644 GCGCATCCCATCTCTCTGGCCGACGTACTG--C-C-CGCCCGCCCGCCCACTCATTTCGTCGGTT
447733 GGCTTAGGC
705 GGCTTAGGC
* * *
447742 ATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATTGAGGGTTGCAATAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAACAGCA
447796 GGATCGGTAG
Statistics
Matches: 692, Mismatches: 71, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
713 2 0.00
714 43 0.06
715 375 0.54
716 187 0.27
718 1 0.00
719 1 0.00
720 83 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAACAGCACATGCAGGCTA
AGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACAGGAGCATCGCCAGAGAACCT
GACCGGCGGCATTAGGGTTCCGGCAATCGGGGCGGCCAGGGGGGTGTGCACACATGATGTGCAAT
GGGTGCTGGTACTTGGCCCTTATATGGTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAAGTGTTTAGCTGAATTTTTTTGTGCA
AGCCAAAAAAAATACAAGGACCACAACTACCAAGTTTGGGACCAAAAATCCTATCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACAAGGCTTGCGCATC
CCATCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGC
Found at i:447934 original size:26 final size:26
Alignment explanation
Indices: 447898--447950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
447888 GTTGACTTAG
*
447898 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
447924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
447950 G
1 G
447951 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:449997 original size:878 final size:885
Alignment explanation
Indices: 447020--450631 Score: 4096
Period size: 878 Copynumber: 4.0 Consensus size: 885
447010 GTTGGCTTAG
* * * * *
447020 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
447085 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCGTCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CGT---CGGAGA
* *
447150 ACCTGACCGGCGGCATTGGGGTTCCGGT-GATCGGGGGGGCCAGGGGGG-TGTGCGCACATGATG
120 ACCTGACCGACGACATTGGGGTTCC-GTCGATCGGGGGGGCCAGGGGGGCTGTGCGCACATGATG
* * * *
447213 TGCAATGGGTGCTGGTACTTGGCCCTTATACTGGTCTCCTATCCCTCATCAAACCTCAAGAACTC
184 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCATCCCTCATCAAACCTCGAGAACTC
* * * *
447278 ACACCTCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
447343 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *** *
447408 TGTGCAAGCCAAAAAAAATACAAGGACCATAACTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
378 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
447473 AAATTTTAAAAAATCTCGAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATTGAGAACGAGTCGT
443 AAATTTTAAAAAATCTCGAACC-GCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * ** *
447538 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACAAATTTACAAGCCATAAAAATT
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
447603 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATACACGGCTT
572 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
447668 GCGCATCCCATCTCTCTGGCCGACGTACTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGGTT
637 GCGCATCCCGTCTCTCTGGCCGACGTA-----C-AT-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ***
447733 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATTGAGGGTTGCAATAGCAGG
695 GGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCAGG
* * * * * * *
447798 ATCGGTAGCATGTAGAGGGGGATCCGGTCAATCCCCGGCTTACGCATCTCGCCCCTTTGGCCGAT
760 ATCGGCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGCT
* *
447863 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
825 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
447924 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
447989 CTC-GACCATGTGCTGGTGCCGCATTTTTCTTCGTCATGGCACCATCGCCAGAGCATCGTCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC--GG-------GGC--ACCATCGTCGGAG
* * * *
448053 AACCTGACCGGCGACATTGGGGTTCCGACAATCCGGGGGGGCCAGAGGGGGGCTGTGCGGACATG
119 AACCTGACCGACGACATTGGGGTTCCGTCGAT-CGGGGGGGCC--AGGGGGGCTGTGCGCACATG
* * *
448118 ATGTGCGATGGGTGCTGGTAGTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
181 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCGAGAA
* *
448183 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTT
245 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * **
448248 GAAATGAGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACATTTCTTGTTTTTAGCTGAA---
310 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
448310 ATGT-TACA--CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAGCTCCTTCCA
375 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
448372 AAAAAATTTTAAAAAATCACGAACTGTAAAAATTTTTAAAAATCGTGAAAAAATAG-AAACGAGT
440 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATG-AAAAATAGAAAACGAGT
**
448436 -GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGGATTGTATGAATTTACAAGCCATAAAA
504 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
448500 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
569 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
448565 CTTGCGCATCCTGTCTCTCTGGCCGGCGTAGA-GCCCGTCAACCCGCCCACCCGCTCGTTTCGTC
634 CTTGCGCATCCCGTCTCTCTGGCCGACGTACATGCCCG----CCCG----CCCGCTCGTTTCGTC
* * * * *
448629 AGTTTGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGACTAGAC-CAAGGGTTGCGGCA
691 GGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAA-GGTTGCGGCA
* * * * * * * *
448693 GCAAGAACGGCAGCATGCAGAGGGGGACCAGGCTGATGCTCAGCTTGCGCATCCCGCCCCTTTGG
755 GCAGGATCGGCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGG
448758 CCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
820 CC-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
448823 AA
884 AA
* * *
448825 G----C--A--T-A----C-G---AAG-T-G-ACCGAACCGAGGGTTGCGATATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
448870 CTCAGGCATGTGCTGTTGCCGTATTTTTCTTCGTCGGGCCAGCATCGTTGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG---GCA-C-------CATCGTCGGAGA
* * ** *
448935 ACCTGACCGACGACCTTGGGGTTCCGGCGATCGAAGGGGCTGAGGGGTGGGCTGTGCGCACATGA
120 ACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGGC-CA-GGG-GGGCTGTGCGCACATGA
** * ** * *
449000 TGTGCAATTTGAGCTGGTACTTGGCCCTTATATTCACCCCATATCCCTCATCAAACCTTGAGAAC
182 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CATCCCTCATCAAACCTCGAGAAC
* * *
449065 TCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGTCAGCAGCCATTAAAGTGTCTA
246 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
*
449130 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
311 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
449195 TTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCC-A
376 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
449259 AAGAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGT
441 AA-AAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
449323 CGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
504 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
449387 ATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCGCCTACCACCCTATCGATCCACAG
569 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
449452 CTAG-ACATCCCGTCTCTCTAGCCGACGTA-ATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
634 CTTGCGCATCCCGTCTCTCTGGCCGACGTACATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** *
449515 TAGGCATACGAAGTTCATTCCAAGTCTAAGATCAAACCGGACTGAAGGTTATGGCAGTAGGATCG
699 TAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCAGGATCG
* * * * *
449580 ACAGCACGTAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
764 GCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCC-GCTGAG
* * * * *
449645 CGCCCGTACACTCATTTCATGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAA
828 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
449703 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGACGGTTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
449768 CTC-GGTAATGTGCCGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGATCGA
66 CTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGA
* * * **
449832 CGGCATTGGGGTTTCGTCGATC-GGGGGGCCA-GGGGG-TGTGCACACATGATGTGCGGTGGGTG
130 CGACATTGGGGTTCCGTCGATCGGGGGGGCCAGGGGGGCTGTGCGCACATGATGTGCAATGGGTG
* * *
449894 CTGGTACTTGGCCCTTACAGTGG-CCCC-TCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
195 CTGGTACTTGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
449957 AGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * *
450022 TTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
450087 CAAAAATACAAGGATCACGTCCACTAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
390 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
450152 ATCTCGAACCACAGAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
455 ATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
450217 TTCACGTGAAGCCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
520 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
450282 GAACTATGAAGATGTGCCTAAACTCACCTACCACCGTATCGATCCACGGCTTGCGTATCCCGTCT
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
450347 CTCTGGCCGGCGTA-GTGCCCACCCGTCCGCCCGCTTGCCTGTTCATTTCGTCGGTTGGCTTAGG
650 CTCTGGCCGACGTACATG----CCCGCCCGCCCGC-T--C-G----TTTCGTCGGTTGGCTTAGG
* * ** * * *
450411 CATATGGAGTTCATTCCTAGTCTTGCGCATCCCAGGGTTACAGCAAACTGGATCGAGGGTTACAG
703 CATACGAAGTTCATTCCTAGTC-TAAG-AT--CA--G--AC--CAGACT-GA---A-GGTTGCGG
* * * * * **** * *
450476 CAACAGCATCGGCAGCA--CACTAGGGGAACCTAATCGATCCCCGGCTTGCGTATCCCGCCCCTC
753 CAGCAGGATCGGCAGCATGTA-GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTT
* * * * *
450539 TAGCCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
817 TGGCC-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
450604 TCCAA
881 TCTAA
**
450609 GCATATAGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
450632 CAAGCATACG
Statistics
Matches: 2308, Mismatches: 290, Indels: 218
0.82 0.10 0.08
Matches are distributed among these distances:
872 1 0.00
873 1 0.00
875 1 0.00
878 443 0.19
879 119 0.05
880 36 0.02
881 320 0.14
882 10 0.00
883 3 0.00
884 18 0.01
885 6 0.00
886 44 0.02
887 250 0.11
888 13 0.01
891 1 0.00
892 45 0.02
893 3 0.00
894 3 0.00
895 7 0.00
896 7 0.00
897 4 0.00
898 57 0.02
899 1 0.00
900 266 0.12
901 88 0.04
902 80 0.03
903 3 0.00
904 125 0.05
905 13 0.01
906 120 0.05
907 32 0.01
908 182 0.08
913 2 0.00
915 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
GACATTGGGGTTCCGTCGATCGGGGGGGCCAGGGGGGCTGTGCGCACATGATGTGCAATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTACATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
TTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGG
ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:450619 original size:26 final size:26
Alignment explanation
Indices: 450583--450657 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
450573 GTTGACTTAG
*
450583 GCATACGGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
*
450609 GCATATAGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
*
450635 GCATACGGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATTCCCAGTC
450658 TAAGATTGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCCAA
Found at i:451012 original size:26 final size:26
Alignment explanation
Indices: 450976--451028 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
450966 GTTAACTTAG
* *
450976 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
451002 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
451028 G
1 G
451029 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:453213 original size:26 final size:26
Alignment explanation
Indices: 453177--453229 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
453167 GTTCACTTAG
453177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
453203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
453229 G
1 G
453230 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:454045 original size:26 final size:26
Alignment explanation
Indices: 454009--454061 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
453999 GTTGACTTAG
454009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
454035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
454061 G
1 G
454062 ATCGGACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:454964 original size:159 final size:159
Alignment explanation
Indices: 454684--455044 Score: 431
Period size: 159 Copynumber: 2.3 Consensus size: 159
454674 CACGGTTTTC
* * * * * ** *
454684 GCATCCCGTCTCTCTGGCCGGC-GTAGTGCCTGCCCGCTCGTTTCG-TCAGTTGGCTTAGGCATA
1 GCATCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTT-GTTGGGTTGACTTAGGCATA
* * * *
454747 CGGAGTTCATTCCCAGTCTAAGATCATACTAGACTGAAGGTTGTGAGAGCAGGATCGACAGCACG
64 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGACAGCAGGATCGACAGCACG
* **
454812 CAGAGGTGGACCCGATTGATCCCCGGCTTGT
129 CAGAGGGGGACCCGACCGATCCCCGGCTTGT
* *
454843 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTGTTGGGTTGACTTAGGGATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTGTTGGGTTGACTTAGGCATACG
** * * * * * *
454908 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCT-CCAGTAGGGTCGACAGCACGT
66 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTG-TGACAGCAGGATCGACAGCACGC
*
454972 AGAGGGGGACCCGACCGATCCCTGGCTTGT
130 AGAGGGGGACCCGACCGATCCCCGGCTTGT
*
455002 GCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
455045 CGTGGGCATA
Statistics
Matches: 171, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 168 0.98
160 2 0.01
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTGTTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGACAGCAGGATCGACAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGT
Found at i:455086 original size:26 final size:26
Alignment explanation
Indices: 455050--455128 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
455040 CGTTTCGTGG
*
455050 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
455076 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
455102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
455128 G
1 G
455129 ATCAGATCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:456852 original size:26 final size:26
Alignment explanation
Indices: 456816--456868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
456806 GTTGACTTAG
456816 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
* *
456842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
456868 G
1 G
456869 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:457739 original size:26 final size:26
Alignment explanation
Indices: 457703--457755 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
457693 GTTGACTTAG
457703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
457729 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
457755 G
1 G
457756 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:460256 original size:15 final size:15
Alignment explanation
Indices: 460236--460276 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
460226 ACTAAGGGTT
*
460236 GCAGCAGTAGGATTG
1 GCAGCAGTAGGATCG
460251 GCAGCAGTAGGATCG
1 GCAGCAGTAGGATCG
460266 GCAGCACGTAG
1 GCAGCA-GTAG
460277 AGGGGGACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.27, C:0.20, G:0.39, T:0.15
Consensus pattern (15 bp):
GCAGCAGTAGGATCG
Found at i:460393 original size:26 final size:26
Alignment explanation
Indices: 460363--460415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
460353 GTTGACTTAG
460363 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
460389 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
460415 G
1 G
460416 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:461299 original size:26 final size:26
Alignment explanation
Indices: 461268--461319 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
461258 GTAGACTTAG
*
461268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
461294 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
461320 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:461781 original size:901 final size:899
Alignment explanation
Indices: 459910--466181 Score: 5184
Period size: 905 Copynumber: 6.8 Consensus size: 899
459900 CAACTCTGGG
* * **
459910 CAAAACGT-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAA
1 CAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
459974 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGGGACGGCTTAAGGGACCATTGTATGAATT
65 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
460039 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACA
130 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * **
460104 CTATCGGTCCACGACTTGCGCATCCTGTCTCTCTGGCCAGCGTGGTGCCCG--CCCGCCCGTCCG
195 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCCCGCCCACCCG
* * *
460167 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTAAG
259 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGAC----
* * * *
460232 GGTTGCAGCAGTAGGATTGGCAGCAGTAGGATCGGCAGCACGTAGAGGGGGA-CCTAGCCGATCC
320 ---T---G-AG--GG-TT-GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCC
* * * * * * * * ** *
460296 TCGGTTTACGCATCTCACCTCTCTTGCCGGCTGAGCGCCCACACTCTCGTTTCATGGGTTGACTT
373 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTT
* * * * *
460361 AGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAG
438 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACC-G
* * * * * * * *
460426 ACCGAGGGTTACGACAGCACATACTAGGCTCGGGCATGTGCTGGCGCCACATTTTTCTTCGTCAG
502 GCCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * *
460491 GGCACCATCATCGGAAGCATCG-CTGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGG
567 GGCACCATCGTCGG-AGCATCGTC-GGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGG
* * * * * *
460555 GGGGTCGGGGGGGTGTGCTCATAAGATGTGCGATCGGTGTTGGTACTTGGCCCTTATATTGGCCC
630 GGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* ** * *
460620 TCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACGGGTTT
694 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
460685 GCTGCCAGTAGCCGTTAAATTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGT
759 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * * * ***
460749 ACACTTTAAGTTTTTAGCTGAATTTTTTTGCGCATACCAACAAAAATACAAGGATCATGTCTGTG
824 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
460814 AAGTTTGGGGC
889 AAGTTTGGGGC
** * * *
460825 CAAAACTAATTCCGAAAAAAATTTTAAAAAATCCTGAACCGCATAAAGTTTCAAAAATCGTGAAA
1 CAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
460890 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
65 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
460955 TACAAGCCATAAAATTGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
130 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
461020 CTATCAATCCACGGCTTGCGTATCCTGTCTCTCTAGCCGCCGTAGTGCCGGCCCATCCGCCCACC
195 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCC--CCGCCCACC
* * * * * *
461085 CGCTCGTTTCGTTGGTTAGCTTAGGCATATGGAGTTCATTCACAGTATAAGATTGAACCAGACCG
257 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTG
* * * * * * *
461150 AGGATTGTAGCAGCAGGATTGGCAGCACGCAGAGGGGGACACGACCAATCCCCGGCTTGTGCATC
322 AGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * * * *
461215 CTGCCCCTCTGGCCGACTAAGCGCCCGCAAGCTTGTTTCATTGGTAGACTTAGGCATACGGAGTT
387 CCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
461280 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCGGCCAAGGGTTACGGC
452 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGCCAAGGGTTACGGC
* *
461345 AGCATATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
517 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
*
461410 GCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGC
582 GCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
* * *
461474 GCACATGATGTACGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACC
647 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
461539 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
712 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
461604 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
777 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
461669 TGAATTTTTTTGTGCATGCCAACAAAAATGC-AGGCATCACGTCTACCAAGTTTGGGGC
842 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGC
** *
461727 CAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
461792 ATAGGAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
461857 ACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * **
461922 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCTCGCCCAGTC
196 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCC--CCCGCCCACCC
* * * *
461987 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TCAGATC-GAATC
258 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACT-
* * ** * * *
462050 AAGGGTTGCGGCAATAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACAT
321 GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* *
462115 CCCGCCCCTCTGGCCGGCTGAGCGCCCGTACA-TTCGTTTCGTGGGTTGACTTAGGCATACGGAG
386 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCA-AGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * **
462179 TTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTGGC
450 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACC-GGCCAAGGGTTAC
* * * * * *
462244 AGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGCC
514 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
** * * * * * *
462309 GGAGCATCACCGGAGAACCTGACCGACGACATTAGGATTCCGGCGATCGGGGGGGCCGAGGGGGG
579 GGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGG
*
462374 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATC
642 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * **
462439 AAACCTCGAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGAT
707 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
462504 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
772 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * ** * * *
462569 TTGGCTGAATTTTTTTGTGCAAGAGAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGGC
837 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
462632 CGAAACTGCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAATA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
462697 ATAGAAAACGAGTTG-CATTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATT
66 ATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
462761 TACAAGTCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAAC
130 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * **
462826 CTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTCTGCC
195 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCG-CC-CCCGCCCACC
* * * *
462891 CG-TTGATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGA-TCAGACCAGAC
257 CGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGAC
* * * * *
462954 TGAGGGTTGCAGTAGCAGGATTGGCTGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCT
320 TGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * ** *
463019 TCCCGCCCCTCTGGCCGACTGAGCGCTCGTATTCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
385 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* ** * * * * * *
463084 TTCATTCCAAGTCTAAG-AT-C-G-G---A-T-CGGATCGAGGGTTGCGA-CAG-C-A-GGAT-C
450 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG-GACCGGCCAAGGGTTAC
** * * * *** * *** *
463135 GGCAGCACCCA-GAAGGGGACTCGGCCGATCCTCAGCTTGCGTATCCCGCCCCTCTGGCCGGTTG
514 GGCAGCA--CATG-CTGGG-CTCGGGC-AT-GT--GC-TG-G--TGCCGCATTTTTCTTC-GTCG
* * ** * * * *** * *** * *
463199 AGCGCTCCCA-CGCTC---GTTTCGTGGGTTG-ACTTAGGCATACAAAGTTCATTCTCGAT-CTA
566 -GGGC-ACCATCG-TCGGAGCATCGTCGG-AGAACCT--G-AT-CGGCG-GCATTGGGGTTCCGA
* ** * * * * *
463258 AGATCGGACTGGACCGAGGGTTACG-GCAGCACATGCTAG-GCTCGA-GCAGGTGCTGGTGCCAT
622 CGATCGG-GGGGGCCGGGGGGT--GTGC-GCACATGAT-GTG--CGATG--GGTGCTGGT-AC-T
**** * ** * * * * * * * * **
463320 ATTTTTCTTCGT-CGGGGCACC-AT-CGTCGGAGC-ATCGTAGGAGAACCTGATCGA-CGGC--A
676 -TGGCCCTT-ATATTGGCCCCCTATCCCTC--ATCAAACCT-TGAGAA-CTCA-C-ACCCCCTTA
* ** * **** * * * * ****
463378 TAG-GGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGC-GCACAGGATGTGCGATGGGTGCTGGT
733 AAGAGCATT-TGA-GAT-----TTTAC---AGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT
* * ** * ** * **** ** *
463441 ACTTGGCCGTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
782 -C-T----G--AAATGGGGACACT-T---TTTTCAAA--T---G--GTCACAAAATCTTGTACA-
* * * * * * * *** **** *
463506 CATTTGAGATTTTACAAGTTTGCCGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTT
827 C-TTCGAG--TTT-----TTAGCTG--A--A--T-TT---TTTTGTG-CATGCCAACA-AAAATA
* * ***
463571 CAAATGG-TCACAAAATCTTGTGCACTCCGAGTTTTTAGC
872 C-AA-GGATCAC---GTC---T--A--CCAAGTTTGGGGC
* *** ** * ** * * **
463610 TGAATGTTTTTGTGCATGCCAAAAAA-AATACAAGGATAACGTCTACAAAGTTTGGGGCCAAAAA
1 -CAAAACTCCT-T-C---CGAAAAAATTTTA-AA--A-AA--TC-CCGAA-----CCG-CAAAAA
* * * *
463674 TCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAAAA
47 -------G-------TTTCAAAAA--TC--A-TG-AAAAA---TAGAAAA-CG-----AGT----
** *
463739 AACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
79 --CGTCTTGC-----CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
463804 CATAAAAACGGTATTGGCGA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCG
137 CATAAAAATGGCATTGGC-ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *** *
463868 ATCCATGACTTGCCCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCTTTCGCTTG
201 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCC-CC-GCCCACCCGCTCG
*
463933 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACC-GAACAT-AGG
263 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAG-AC-TGAGG
* * * * **
463995 GTT--ATGACAGTAGGATTGGCAGCATC-CAGAGGGGGACCAGGTCGATCCCCGGCTTAAGCATC
325 GTTGCA-G-CAGCAGGATCGGCAGCA-CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * *
464057 CCGCCCCTCTGGCTGGCTGAGCGCCCGCACA-CTCGTTTCATTGGTTGACTTAGGCATACGGAGT
387 CCGCCCCTCTGGCCGGCTGAGCGCCCGCA-AGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * ** * * * *
464121 TCATTCCCAGCCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCA
451 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGG-CCAAGGGTTACG
* * * *
464186 GCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGAGCACCATCGTCG
515 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * *
464251 GAGCATCGCCAGAGAACCTGA-CTGGCGGCATTGGGGTTCCGCCGATCGGGGGGGCCGGGGGGTG
580 GAGCATCGTCGGAGAACCTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-----G-G
* * *
464315 GGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCT
638 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
464380 CATCAAAGCTTGAGATCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
703 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
464445 AGCAATTAAAGTGTCT-AGAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
768 AGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
464509 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
832 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
464574 GGC
897 GGC
* * **
464577 AAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
464642 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
464707 ACAAGCCATAAAAATGGCATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
464772 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTCGTGCCCGCCCGCCCGTCCGCCC
196 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCG-CC-CCCGCCCACCC
* * * *
464837 GCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTG-ACCGGATTG
258 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACTG
* * ** * * * *
464901 AGGATTGCAACAGCAGGATCGATAGCACGTAAAGGGGGACCCGGTCGATCCCCGGCTTCCGCATC
322 AGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * * *
464966 CCGCCCCTCTGGCCGGTTGAGCTCCTGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTT
387 CCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
465031 CATTCCTAGTCTAAG-AT-C--AG----------A-C------CGGACC-G---AGGGTTACGGC
452 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGCCAAGGGTTACGGC
*
465071 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCGTCGGA
517 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * *
465136 G-AAC-T---TG-ACC-GA----CGACATTGGGGTTCCGACGATCGGGGGGGGCCAGGGGGTGTG
582 GCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTG
* * * * *
465190 CACACAT-AGTGTGCAATGGGTGCTGGTTCTTGGCCCTCATATTGGGCCCCTATCCCTCATCAAA
646 CGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
465254 -CTGTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAT
710 CCT-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
465318 TAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
774 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
465383 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
839 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
465444 CAAAACTCCTTCCGAAGAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
465509 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
465574 ACAAGCCATAAAAATGGCATGGGCATGCATAAATATGAGGATGTGCCTAAACCCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
465639 TATAGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT----------GCCAATCCGC
196 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCCCGCCCACCCGC
* * * * * *
465694 TCGTTTCGTCGGTTGGCTTATGCATACGAAATTCACTCCCAGTCTAAGATTGAATCGGACTGAGG
260 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGG
* * * * * * * * * * *
465759 GTTACTGTAGCAAGATCGACAGCATGCAGCGGGGGACCCGGTCGATCCTCGACTTGTGCATCCCG
325 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * * *
465824 TCCCTCTGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCAT
390 CCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * * * *
465889 TCCCAGTATAAACATACGGAGTTCATTCCCAGTCTAAAATCGGACTGGACCGAGGGTTGCGACAA
455 TCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGG-CCAAGGGTTACGGCAG
* ** *
465954 CACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
519 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * * * * *
466019 ATCATCGGAGAACCTGATCGGCGGGATTTGGGTTCCGATGATCGGGGGGTCGGGAGGGGGTGTGC
584 ATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CG-GGGGGTGTGC
* * *
466084 GCACATGATGTGCGATGGGTTCTGGTACTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACC
647 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
466149 -TCAGGAACTCACAACCCCTTAAAGAGCATTTGA
712 TTGA-GAACTCACACCCCCTTAAAGAGCATTTGA
466182 CTTAGGTTGA
Statistics
Matches: 4285, Mismatches: 761, Indels: 644
0.75 0.13 0.11
Matches are distributed among these distances:
854 2 0.00
855 175 0.04
856 2 0.00
857 1 0.00
859 2 0.00
866 3 0.00
867 459 0.11
868 1 0.00
870 1 0.00
872 20 0.00
873 9 0.00
876 7 0.00
877 4 0.00
878 1 0.00
881 69 0.02
882 4 0.00
883 71 0.02
886 1 0.00
887 4 0.00
888 5 0.00
891 13 0.00
892 23 0.01
893 96 0.02
894 9 0.00
895 2 0.00
896 10 0.00
897 3 0.00
898 3 0.00
899 2 0.00
900 5 0.00
901 568 0.13
902 237 0.06
903 53 0.01
904 84 0.02
905 797 0.19
906 23 0.01
907 21 0.00
908 7 0.00
909 322 0.08
910 15 0.00
911 6 0.00
912 8 0.00
913 21 0.00
914 12 0.00
915 15 0.00
916 211 0.05
918 1 0.00
919 1 0.00
920 64 0.01
921 2 0.00
922 8 0.00
923 1 0.00
924 1 0.00
925 6 0.00
926 7 0.00
927 2 0.00
928 1 0.00
929 6 0.00
930 1 0.00
931 1 0.00
933 2 0.00
935 16 0.00
936 1 0.00
939 6 0.00
941 1 0.00
942 1 0.00
944 1 0.00
946 10 0.00
947 1 0.00
948 5 0.00
949 6 0.00
950 4 0.00
955 7 0.00
956 2 0.00
957 1 0.00
958 2 0.00
959 2 0.00
961 10 0.00
962 4 0.00
964 1 0.00
965 5 0.00
966 9 0.00
967 11 0.00
968 4 0.00
969 3 0.00
971 3 0.00
974 3 0.00
976 3 0.00
977 6 0.00
978 11 0.00
979 8 0.00
980 5 0.00
981 1 0.00
983 3 0.00
984 10 0.00
986 2 0.00
987 2 0.00
988 1 0.00
989 2 0.00
990 8 0.00
995 4 0.00
996 5 0.00
997 6 0.00
998 1 0.00
999 10 0.00
1001 1 0.00
1003 1 0.00
1004 1 0.00
1006 6 0.00
1009 2 0.00
1010 13 0.00
1012 2 0.00
1014 1 0.00
1015 1 0.00
1016 5 0.00
1017 1 0.00
1018 2 0.00
1019 7 0.00
1020 7 0.00
1021 1 0.00
1022 1 0.00
1023 8 0.00
1024 44 0.01
1025 59 0.01
1026 46 0.01
1027 40 0.01
1028 43 0.01
1029 27 0.01
1030 69 0.02
1031 140 0.03
1032 74 0.02
1033 46 0.01
1034 68 0.02
1035 51 0.01
1036 386 0.09
1037 76 0.02
1038 55 0.01
1039 74 0.02
1040 60 0.01
1041 54 0.01
1042 26 0.01
1043 30 0.01
1044 22 0.01
1045 30 0.01
1046 22 0.01
1047 36 0.01
1048 26 0.01
1049 25 0.01
1050 21 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCCCGCCCACCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGG
TTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGCCAAGGGTTACGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
CGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
Found at i:462205 original size:26 final size:26
Alignment explanation
Indices: 462169--462221 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
462159 GTTGACTTAG
* *
462169 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
462195 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
462221 G
1 G
462222 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:463201 original size:159 final size:157
Alignment explanation
Indices: 462905--463288 Score: 416
Period size: 159 Copynumber: 2.4 Consensus size: 157
462895 GATTTCGTCA
* * * * * *
462905 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACTGAGGGTTGC-AGTAG
1 GTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGA-CGGAC-GAGGGTTGCGA-CAG
* * * * * *
462969 CAGGATTGGCTGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCTTCCCGCCCCTCTGGC
63 CAGGATCGGCAGCACCCAGAAGGGGACCCGACCGATCCCAGACTTGCGCTTCCCGCCCCTCTGGC
** ** *
463034 CGACTGAGCGCTCGTATTCTCGTTTTGTGG
128 CGACTGAGCGCTCCCACGCTCGTTTCGTGG
463064 GTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGA-CGGA-CGAGGGTTGCGACAGC
* *
463129 AGGATCGGCAGCACCCAGAAGGGGACTCGGCCGATCCTCAG-CTTGCG-TATCCCGCCCCTCTGG
64 AGGATCGGCAGCACCCAGAAGGGGACCCGACCGATCC-CAGACTTGCGCT-TCCCGCCCCTCTGG
**
463192 CCGGTTGAGCGCTCCCACGCTCGTTTCGTGG
127 CCGACTGAGCGCTCCCACGCTCGTTTCGTGG
** * * *
463223 GTTGACTTAGGCATACAAAGTTCATTCTCGA-TCTAAGATCGGACTGGACCGAGGGTTACGGCAG
1 GTTGACTTAGGCATACGGAGTTCATTC-CAAGTCTAAGATCGGAC-GGA-CGAGGGTTGCGACAG
463287 CA
63 CA
463289 CATGCTAGGC
Statistics
Matches: 191, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
158 2 0.01
159 183 0.96
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACGGACGAGGGTTGCGACAGCAG
GATCGGCAGCACCCAGAAGGGGACCCGACCGATCCCAGACTTGCGCTTCCCGCCCCTCTGGCCGA
CTGAGCGCTCCCACGCTCGTTTCGTGG
Found at i:464141 original size:26 final size:26
Alignment explanation
Indices: 464110--464162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
464100 GTTGACTTAG
*
464110 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGCAGTTCATTCCCAGCCTAA
*
464136 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGCCTAA
464162 G
1 G
464163 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGCCTAA
Found at i:465014 original size:909 final size:897
Alignment explanation
Indices: 463241--466181 Score: 3708
Period size: 909 Copynumber: 3.3 Consensus size: 897
463231 AGGCATACAA
* * *
463241 AGTTCATTCTCGATCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCA
1 AGTTCATTCCCG-TCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * *
463306 GGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTGATC
65 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCA-GAGAACCTGATC
* * *
463371 GACGGCATAGGGGTTCCGATGATCGGGGGGGCCG-GGGGGTGTGCGCACAGGATGTGCGATGGGT
129 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* **
463435 GCTGGTACTTGGCCGTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAA-CTTGAGAACTCACACCCCCTT
* * *
463500 AAAGAGCATTTGAGATTTTACAAGTTTGCCGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
* *
463565 TTTTTTCAAATGGTCACAAAATCTTGTGCACTCCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTTGTGCATGC
* * *
463629 CAAAAAAAATACAAGGATAACGTCTACAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
386 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* ** * * *
463694 AAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAAAAAACGAGTTGTCTTGCCATGA
451 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
463759 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGTATTGGCGA
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-AA
* * *
463824 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCATGACTTGCCCATCCCG
580 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * *
463889 TCTCTCTGGCCGGCATAGTGCCCGCCCGCCTG-CCCTTTCGCTTGTTTCGTCGGTTGGCTTAGGC
645 TCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGTCCC---CGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** * * *
463953 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAT-AGGGTTATGACAGTAGGATTGGCAG
707 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCGGA-ATGAGGGTTACAACAGCAGGATCGACAG
* * *
464017 CATC-CAGAGGGGGACCAGGTCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCTGGCTGAGCGC
771 CA-CGCAGAGGGGGACCCGGTCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCTC
* * * *
464081 CCGCACACTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGC
835 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGC
* * * * * *
464144 AGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCC-GTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* *
464209 TGTGCTGGTGCCACATTTTTCTTCGTCAGAGCACCATCGTCGGAGCATCGCCAGAGAACCTGA-C
65 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGATC
* * * * *
464273 TGGCGGCATTGGGGTTCCGCCGATCGGGGGGGCCGGGGGGTGGGGGTGTGTGCACATGATGTGTG
129 -GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-----GAGGGGGTGTGCGCACATGATGTGCG
*
464338 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAGCTTGAGATCTCACAC
188 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAA-CTTGAGAACTCACAC
464403 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT-AGAATG
251 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA-AATG
* *
464467 GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
*
464532 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGAAAAAA
380 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * *
464597 TTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
445 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
464662 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
464727 TGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
575 TGGAA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * *
464792 ATCCCGTCTCTCTGGCCAGCGTCGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCT
639 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGT-C-CCCGCTCGTTTCGTCGGTTGGCT
* * *
464857 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCGGATTGAGGATTGCAACAGCAGGATCG
702 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCGGAATGAGGGTTACAACAGCAGGATCG
* * * ** *
464922 ATAGCACGTAAAGGGGGACCCGGTCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGTTGAG
767 ACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
464987 CTCCTGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAG--T---C-TA--
832 CTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
465044 -
897 C
465044 AG---A------TC--AGA-C---C-GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
1 AGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* * * *
465093 GTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCA---TC---G--TCG--GAGAACTTGACCGA
66 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGATCGA
* * *
465148 CGACATTGGGGTTCCGACGATCGGGGGGGGCC-AGGGGGTGTGCACACAT-AGTGTGCAATGGGT
131 CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGAGGGGGTGTGCGCACATGA-TGTGCGATGGGT
* * *
465211 GCTGGTTCTTGGCCCTCATATTGGGCCCCTATCCCTCATCAAACTGTGAGAACTCACACCCTCTT
194 GCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACT-TGAGAACTCACACCCCCTT
* * *
465276 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
*
465341 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
* * * * *
465406 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAGAAAGTTTAAA
387 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
465471 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
465536 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-AAG
* * *
465601 CATAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGACTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* *
465666 CTCTCTGGCCAGCGTAGT--------GCCAAT--CCGCTCGTTTCGTCGGTTGGCTTATGCATAC
646 CTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGTCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *** * *
465721 GAAATTCACTCCCAGTCTAAGAT-TGAATCGGACTGAGGGTTACTGTAGCAAGATCGACAGCATG
711 GAAGTTCATTCCCAGTCTAAGATCTG-ACCGGAATGAGGGTTACAACAGCAGGATCGACAGCACG
* * * ** * *
465785 CAGCGGGGGACCCGGTCGATCCTCGACTTGTGCATCCCGTCCCTCTGGTCGGCTGAG-TGCCCGC
775 CAGAGGGGGACCCGGTCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCT-CCCGC
* * * * *
465849 ACGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTATAAACATACGG
839 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGC
* * * * *
465908 AGTTCATTCCCAGTCTAAAATCGGACTGGACCGAGGGTTGCGACAACACATGCTGGGCTTGGGCA
1 AGTTCATTCCC-GTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * *
465973 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGATC
65 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCAGAGAACCTGATC
* * * * * *
466038 GGCGGGATTTGGGTTCCGATGATCGGGGGGTCGGGAGGGGGTGTGCGCACATGATGTGCGATGGG
129 GACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGAGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * *
466103 TTCTGGTACTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTCAGGAACTCACAACCCCT
193 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACTTGA-GAACTCACACCCCCT
466168 TAAAGAGCATTTGA
256 TAAAGAGCATTTGA
466182 CTTAGGTTGA
Statistics
Matches: 1767, Mismatches: 202, Indels: 148
0.83 0.10 0.07
Matches are distributed among these distances:
854 3 0.00
855 169 0.10
857 1 0.00
859 4 0.00
860 1 0.00
861 2 0.00
864 2 0.00
866 3 0.00
867 454 0.26
868 8 0.00
872 30 0.02
873 10 0.01
874 2 0.00
875 3 0.00
876 2 0.00
877 2 0.00
880 3 0.00
881 67 0.04
883 66 0.04
884 1 0.00
887 2 0.00
888 3 0.00
889 2 0.00
890 2 0.00
891 7 0.00
892 33 0.02
893 90 0.05
894 1 0.00
897 1 0.00
900 2 0.00
902 1 0.00
903 141 0.08
904 3 0.00
907 1 0.00
908 8 0.00
909 632 0.36
910 2 0.00
911 1 0.00
912 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
AGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGATCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACTTGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
TGGCCAGCGTAGTGCCCGCCCGCCAGTCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGT
TCATTCCCAGTCTAAGATCTGACCGGAATGAGGGTTACAACAGCAGGATCGACAGCACGCAGAGG
GGGACCCGGTCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGC
Found at i:465911 original size:26 final size:26
Alignment explanation
Indices: 465875--465926 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
465865 TCGACTTAGG
465875 CATACGGAGTTCATTCCCAGTATAAA
1 CATACGGAGTTCATTCCCAGTATAAA
*
465901 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTATAAA
465927 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAA
Found at i:467115 original size:26 final size:26
Alignment explanation
Indices: 467079--467131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
467069 GTTGACTTAG
* *
467079 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
467105 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
467131 G
1 G
467132 AACGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:468245 original size:900 final size:899
Alignment explanation
Indices: 466193--469189 Score: 4114
Period size: 900 Copynumber: 3.4 Consensus size: 899
466183 TTAGGTTGAT
* * ** * **
466193 GGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCAACAG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGCTGGACCGAGGG
*
466258 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
65 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * * ** *
466323 ---C-G-CC-T-----GAGAACCTGATCGGTGGCATTAGGGTTCCATCGGTCGGGGGGCCGAGGG
130 CGCCGGACCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGG
* *
466377 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
194 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
466442 TCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
259 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * * *
466507 CCATCAAAATGTCTGAAATGTGGACAATTTCTTCAAATGGTCCCAAAATCTTGTACACTTCGAGT
324 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
466572 TTTTAGCTGAAGTTTTTTGTGCAAGCCAACAAAAATACAAGTATCACATCTACCAACTTTGGGGC
389 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
466637 CAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
454 CAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
466702 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
519 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * *
466767 ATAAGCCATAAAAATGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCC
584 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * * * *
466832 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAAGCGTAGTGCCCGACC-GCCCGTCTGCT
649 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGT-GTGCCAG-CCTGCCCGCCCGCC
* * *
466896 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGATCAGACCG
712 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGA-CCGACCG
*** * * * * * * * * * *
466961 AGGGTTCCAGTAACAAGATCGATAGTACGTAGAGGACGACCCGACCGATCACTGGCTTGCGCATT
776 AGGGTTGTGGTAGCAGGATCGATAGCACGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATC
* * * *
467026 CCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATAC
841 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGACTTAGGCATAC
* * * * * *
467085 GGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAACGGATCAGACTGCA-G
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGCT-GGACCG-AGG
* * *
467149 GTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCG
64 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * *
467214 TCGCCAGAGCATCGCCGGAGAACCTGA-CCGACGGTATTGGGGTTCCGGCGATCGGAGGGGCCGG
129 TCGCCGGACCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGGCGATCGG-GGGGCCGG
* *
467278 GGGGTGTGCGTAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
192 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
467343 CATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
257 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
467408 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
322 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
467473 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
387 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * **
467538 GCCAATAGTCCTTTCAAAAAAATTTTAAAAAAT-CTGAACCGCAAAAAGATTGGAAAATCGTGAA
452 GCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
467602 AAAAAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAAT
517 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
467666 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
582 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
467731 CCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGGTGCTGTGCCAGCCTGCCCGCCCGC
647 CCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTG-TGTGCCAGCCTGCCCGCCCGC
* * * **
467796 CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAATGGACCGATTG
711 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGACCGACCG
* ** * * * *
467861 AGGGTTGTGGCAGCAGGATCGCCAGCACGCAGAGGGGGACCCGGTCGGTCCCCAACTTGCGCATC
776 AGGGTTGTGGTAGCAGGATCGATAGCACGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATC
* * *
467926 CCGCCCCACTGGCCGGCTGAGAGCCCGCACGCTAGTTTTGTGGGTTAACTTAGGCATAC
841 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGACTTAGGCATAC
* * * *
467985 AGAGTTTATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAATATCGGGCTGGACCGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGCTGGACCGAGGG
* * *** * *
468050 TTGCGGCAGCACATGCTGGGCTCGGGTATTTGCTGGTGTTGCATTTTTCTTCGCCGGGTCACCAT
65 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
468115 CACCGGACCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTTCGGCGGTCGAGGTGGCCGGGG
130 CGCCGGACCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGG
*
468180 GGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
194 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
468245 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAG
259 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
468310 CCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
324 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
468375 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
389 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * **
468440 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
454 CAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
468505 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
519 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
468570 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
584 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
468635 TATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGT-T-T---AG--TGCCCGCCCGTCCG
649 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTGTGCCAGCCTGCCCGCCCGCCCG
* *
468693 CTCGTTTTGTCGGTTGGCTTAGTCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCAGACCGA
714 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACC-GACCGA
* * * *
468757 AGGTTGTGGTAGCAGGCTCGGTAGCATGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATCC
777 GGGTTGTGGTAGCAGGATCGATAGCACGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATCC
** * * *
468822 CGCCCCTCTGGCCGGCTGAGCGCCCGTGCGCTCG-TTTGAGTGGTTGACTTAGGTATAC
842 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTTGTG-GGTTGACTTAGGCATAC
*
468880 GGAGTTGATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA----C---A--GAGGGT
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGCTGGACCGAGGGT
* * * **
468920 TGCGGCAGCACCTGCTGGGCTCAGGCATCTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
66 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * * * **
468985 GTCGGAGCATCGCCAGAGAACCTGACCGGCGGGATTGGGGTTCCGACGATCGGGGGGTGGGGGGG
131 GCCGGACCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
* *
469050 TCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATC
196 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
469115 AAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
261 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
469180 ATTAAAGTGT
326 ATTAAAGTGT
469190 TTGTGCATGC
Statistics
Matches: 1879, Mismatches: 200, Indels: 76
0.87 0.09 0.04
Matches are distributed among these distances:
868 145 0.08
869 105 0.06
871 1 0.00
874 1 0.00
879 1 0.00
884 1 0.00
885 2 0.00
888 1 0.00
891 4 0.00
892 110 0.06
893 4 0.00
894 68 0.04
895 123 0.07
896 3 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 541 0.29
901 261 0.14
902 195 0.10
903 302 0.16
904 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGCTGGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
GCCGGACCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTGTGCCAGCCTGCCCGCCCGCCCGCT
CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGACCGACCGAGGGT
TGTGGTAGCAGGATCGATAGCACGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGACTTAGGCATAC
Found at i:469707 original size:26 final size:26
Alignment explanation
Indices: 469677--469729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
469667 CTTGACTTAG
*
469677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
469703 GCATACAGAGTTCATTCTGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
469729 G
1 G
469730 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:470608 original size:26 final size:26
Alignment explanation
Indices: 470572--470624 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
470562 GTTGACTTAG
*
470572 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCCTTCCCAGTCTAA
470598 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCCTTCCCAGTCTAA
470624 G
1 G
470625 ATCAAAACAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCCTTCCCAGTCTAA
Found at i:470929 original size:895 final size:895
Alignment explanation
Indices: 469189--472472 Score: 4483
Period size: 899 Copynumber: 3.7 Consensus size: 895
469179 CATTAAAGTG
* * *
469189 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGA
1 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
469254 AAAAATTTTAAAAAATCGCAAACCACAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
66 AAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * ***
469319 TCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTAAAAGCGGCAAAAAT
131 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
469384 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
196 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
469449 TGCGCATCCCGTATCTCTAGTCGGCGTAGTGATCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGC
261 TGCGCATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * * * **
469514 TTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACCA-AACCGAGGGTTGCAGCAATAGGAT
323 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAACTGAGGGTTGCGGCAGCAGGAT
** * * * * *
469578 CGGTAGCACGCAGAGGGGGACTCGATCAATCTCC-GGCTTGTGCATCCTGCCCCTCTGGCCAGCT
388 CGACAGCACGCAGAGGGGGACCCGACCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCT
* * **
469642 AAGCGCCCGCACGCTCGTTTCATGACTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
452 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * * * *
469707 ACAGAGTTCATTCTGAGTCTAAGATCAGACCGGACCGAGGGTTATGGCCGCAAATGCTGGGCTCG
517 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCG
* * * * *
469772 GGCATGTGCTAGTGCCGTATTTATCTTTGTCAGGGCACCATCATCAGAGCATCACCGGAGAACCT
582 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCT
* *
469837 GACCGGCGGCATTGGGGTTCCGGA-AATCGAGGGGGCCGGGGGGGTGTGAACACATGATGTGCGA
647 GACCGGCGGCATTGGGGTTCC-GACGATCG-GGGGGCC-GGGGGGTGTGAGCACATGATGTGCGA
469901 TGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
709 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* ** *
469965 CCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCT-CTTGGTAGCCATTAAAGTGTCTAAAATCG
774 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATCG
470029 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGT
838 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-T
* * *
470088 TTTGTGCATGCCAACAAAAATA-AATGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCG
1 TTTGTGCATGCCAAAAAAAATACAA-GGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** **
470152 AAAAAATTTTAAAAAATCCCGAACCGCAAAAGGATTGGAAAATTGTGAAAAATAGAAAACGAGTC
65 AAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
470217 GTCCTGCCACGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
* * * *
470282 TGGCATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCGTATCGCTCCACAGC
195 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
470347 TTGCGCATCCCGTCTCTCTGGCCGATGTAGT-GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
260 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * *
470411 AAGCATACACAGTTCATTCCCAGTCTAAGATC-GAACAGAACTGAGGGTTGCGGCAGCAGGATCG
325 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAACTGAGGGTTGCGGCAGCAGGATCG
* *
470475 ACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
390 ACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * *
470540 CGCACGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACG
455 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
470605 GAGTTCCTTCCCAGTCTAAGATCAAAACAGACCAAGGGTTGCGGCAGCACGTGCTAGGCTCGGGC
520 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGC
* **
470670 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAAAATCACCGGAGAACCTGAC
585 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGAC
* * * * * *
470735 CGACGGAATTGGGGTTTCGACGATCGGGGGGCCGCGGGGGTGTGGGCACATGATGTACGATGGCT
650 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGAGCACATGATGTGCGATGGGT
*
470800 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
714 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
470865 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
779 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACAC
470930 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
844 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
* * * * *
470982 TTTTTCCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCTGA
1 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * * *
471047 AAAAATTTTAAAAAATCTTGAACTGCAAAAAGG-TTCGAAAATCATGAAAAATAGAAAATGAGTC
66 AAAAATTTTAAAAAATCCCGAACCGC-AAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
471111 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATAAATTTAGAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
*** * * *
471176 TGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACTACCCTATCGATCCACGAC
195 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
471241 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTAACCGCCCGCCCGACAGCTCGTTTCATCGGTTGG
260 TTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * ** *
471306 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-A-TAGAGGGTTATGACAGCAGG
322 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAACT-GAGGGTTGCGGCAGCAGG
** * * *
471369 ATCGGTAGCACGCAGAGGGGGACCC-AGCCGAT-CCTCGGCATGCGCAACCCGCCCCTCTGGCCG
386 ATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCA
* *
471432 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
449 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
471497 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAACACATGCTGGGC
514 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGC
* * * * *
471562 TCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGTACCATCGCCGGAGCATCACCGGAGAA
579 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAA
* * *
471627 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAGAAGATGTGCG
644 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGAGCACATGATGTGCG
* *
471692 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCAAGAACTCACAC
708 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
471757 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCG
773 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCG
* *
471822 GGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTT
838 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTT
** * * * * *
471881 TTTGTGCATGCCAAAAAAAATACAAGGATCGTGTCCATCGAGTTTGGGTCCTAAACTCCTTCTGA
1 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
471946 AAAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCA
66 AAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
472011 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
131 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
* ** *
472076 GGCATTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCT
196 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * *
472141 TGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCCCGCCTGCTCGCTTGCTCGTTTCATCAGT
261 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGC-C-C--GCTCGTTTCATCGGT
** * * * * * *
472206 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGATCGGATC-GAGGGCTGGGGCAGTA
319 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAACTGAGGGTTGCGGCAGCA
* *** *
472270 GGATCGACAGCACGC-GAAGGGGGACCCAACCGATCCCCAACTTGCGCATCCCACCCCTCTGGCC
384 GGATCGACAGCACGCAG-AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
472334 AGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAA
448 AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
472399 GCATACGGAGTTCATTCCCAGACTAAGATCGGACCGGACCGAGGGTTTTGGCAGCACATGCTAGG
513 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGG
472464 CTCGGGCAT
578 CTCGGGCAT
472473 TTTTCTGCTA
Statistics
Matches: 2103, Mismatches: 253, Indels: 54
0.87 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 301 0.14
895 489 0.23
896 2 0.00
897 6 0.00
898 532 0.25
899 533 0.25
900 1 0.00
902 1 0.00
903 234 0.11
904 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAACTGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
Found at i:471499 original size:26 final size:26
Alignment explanation
Indices: 471470--471522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
471460 GTTGACTTAG
471470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
471496 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
471522 G
1 G
471523 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:471607 original size:898 final size:897
Alignment explanation
Indices: 469193--472472 Score: 4470
Period size: 898 Copynumber: 3.7 Consensus size: 897
469183 AAAGTGTTTG
* *
469193 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAAACTCCTTCCGAAAA
1 TGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAA
* * * * * *
469257 AATTTTAAAAAATCGCAAACCACAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
65 AATTTTAAAAAATCCCGAACCGCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * ***
469322 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTAAAAGCGGCAAAAATGGC
130 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
*
469387 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
195 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * * *
469452 GCATCCCGTATCTCTAGTCGGCGTAGTGATCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTA
260 GCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * ** ** ** **
469517 GGCATACGGAGTTCATTCCCATTCTAAGATCGGACCAAACCGAGGGTTGCAGCAATAGGATCGGT
325 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
469582 AGCACGCAGAGGGGGACTCGATCAAT-CTCCGGCTTGTGCATCCTGCCCCTCTGGCCAGCTAAGC
390 AGCACGCAGAGGGGGACCCGACCGATCCT-CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
* ** *
469646 GCCCGCACGCTCGTTTCATGACTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
454 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * * * * *
469711 AGTTCATTCTGAGTCTAAGATCAGACCGGACCGAGGGTTATGGCCGCAAATGCTGGGCTCGGGCA
519 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* * * * *
469776 TGTGCTAGTGCCGTATTTATCTTTGTCAGGGCACCATCATCAGAGCATCACCGGAGAACCTGACC
584 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACC
* *
469841 GGCGGCATTGGGGTTCCGGA-AATCGAGGGGGCCGGGGGGGTGTGAACACATGATGTGCGATGGG
649 GGCGGCATTGGGGTTCC-GACGATCG-GGGGGCC-GGGGGGTGTGAGCACATGATGTGCGATGGG
469905 TGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
711 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* ** *
469969 TAAAGGGCATTTGAGATTTTACAGGTTTGCT-CTTGGTAGCCATTAAAGTGTCTAAAATCGGGAC
776 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATCGGGAC
*
470033 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
840 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTT
* * * *
470092 TGCATGCCAACAAAAATA-AATGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
1 TGCATGCCAAAAAAAATACAA-GGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
** **
470156 AATTTTAAAAAATCCCGAACCGC-AAAAGGATTGGAAAATTGTGAAAAATAGAAAACGAGTCGTC
65 AATTTTAAAAAATCCCGAACCGCAAAAAGG-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
470220 CTGCCACGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
129 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * *
470285 CATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCGTATCGCTCCAC-AGCTT
194 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTT
*
470349 GCGCATCCCGTCTCTCTGGCCGATGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
258 GCGCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * *
470410 TAAGCATACACAGTTCATTCCCAGTCTAAGATC-GAACAGA-ACTGAGGGTTGCGGCAGCAGGAT
323 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATA--GAGGGTTGTGGCAGCAGGAT
* *
470473 CGACAGCACGCAGAGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
386 CGACAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCAGCT
* * *
470537 GAGCGCACGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCAT
450 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
470602 ACGGAGTTCCTTCCCAGTCTAAGATCAAAACAGACCAAGGGTTGCGGCAGCACGTGCTAGGCTCG
515 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCG
* **
470667 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAAAATCACCGGAGAACCT
580 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCT
* * * * *
470732 GACCGACGGAATTGGGGTTTCGACGATCGGGGGGCCGCGGGGGTGTGGGCACATGATGTACGATG
645 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGAGCACATGATGTGCGATG
* *
470797 GCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
709 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
470862 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
774 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGA
470927 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
839 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * *
470986 TCCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
1 TGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
** * * *
471051 ATTTTAAAAAATCTTGAACTGCAAAAAGGTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTT
66 ATTTTAAAAAATCCCGAACCGCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
471116 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATAAATTTAGAAGCCATAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
*** * *
471181 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACTACCCTATCGATCCACGACTTGCG
196 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * *
471246 CATCCCGTCTCTCTGGCCGACGTAGTAACCGCCCGCCCGACAGCTCGTTTCATCGGTTGGCTTAG
261 CATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * **
471311 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATAGAGGGTTATGACAGCAGGATCGGTA
326 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGAGGGTTGTGGCAGCAGGATCGACA
* * * *
471376 GCACGCAGAGGGGGACCC-AGCCGATCCTCGGCATGCGCAACCCGCCCCTCTGGCCGGTTGAGCG
391 GCACGCAGAGGGGGACCCGA-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
*
471440 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
455 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
471505 GTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAACACATGCTGGGCTCGGGCAT
520 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* * * * *
471570 GTGTTGGTGCCGTATTTTTCTTCGTTGGGGTACCATCGCCGGAGCATCACCGGAGAACCTGACCG
585 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCG
* * *
471635 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAGAAGATGTGCGATGGGTGC
650 GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGC
* *
471700 TGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
714 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
471765 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGAAACTT
779 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTT
*
471830 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTTTTT
844 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
** * * * * * *
471884 GTGCATGCCAAAAAAAATACAAGGATCGTGTCCATCGAGTTTGGGTCCTAAACTCCTTCTGAAAA
1 -TGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * *
471949 AATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCATCT
65 AATTTTAAAAAATCCCGAACCGCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
472014 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
130 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
* ** * *
472079 ATTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
195 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
** * * *
472144 GCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCCCGCCTGCTCGCTTGCTCGTTTCATCAGTTGG
260 GCATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGC-C-C--GCTCGTTTCATCGGTTGG
* * * * * * *
472209 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGATCGGATCGAGGGCTGGGGCAGTAGGAT
321 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGAGGGTTGTGGCAGCAGGAT
* * ** *
472274 CGACAGCACGC-GAAGGGGGACCCAACCGATCCCCAACTTGCGCATCCCACCCCTCTGGCCAGCT
386 CGACAGCACGCAG-AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCT
* * * * *
472338 GAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGCAT
450 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * **
472403 ACGGAGTTCATTCCCAGACTAAGATCGGACCGGACCGAGGGTTTTGGCAGCACATGCTAGGCTCG
515 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCG
472468 GGCAT
580 GGCAT
472473 TTTTCTGCTA
Statistics
Matches: 2099, Mismatches: 251, Indels: 58
0.87 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 301 0.14
895 486 0.23
896 2 0.00
897 1 0.00
898 539 0.26
899 521 0.25
900 7 0.00
902 1 0.00
903 239 0.11
904 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (897 bp):
TGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGACCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATG
TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
Found at i:472409 original size:26 final size:26
Alignment explanation
Indices: 472373--472425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
472363 GTTGACTTAG
*
472373 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGACTAA
* *
472399 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTAATTCCCAGACTAA
472425 G
1 G
472426 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGACTAA
Found at i:473963 original size:26 final size:26
Alignment explanation
Indices: 473927--473979 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
473917 GTTGACTTAG
*
473927 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
473953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
473979 G
1 G
473980 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:474001 original size:185 final size:185
Alignment explanation
Indices: 473768--474186 Score: 541
Period size: 185 Copynumber: 2.3 Consensus size: 185
473758 GTTGGCTTAG
* * * *
473768 GCATACGGAGTTCATTCCTAGTCTAAAATTGGACCAGACCGAGGGTTGCAGCAGTAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGCA
* * ** ** ** *
473833 ACACACAGAGGGGGACCAGGTCGATCCCTGACTTATGCATCCTGCCCCTTTGGCCGGCTGAGTGC
66 ACACACAAAAGAAGACCACATCGATCCCTGACTTACCCATCCTGCCCCTCTGGCCGGCTGAGTGC
* *
473898 CCGCACGCTCGTTACGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
131 CCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
473953 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGCA
* *** * * * * *
474018 GCATGTAAAAGAAGACCCCATCGATCCCTGGCTTGCCCATCCTGCCCCTCTGGTCGGTTGAGTGC
66 ACACACAAAAGAAGACCACATCGATCCCTGACTTACCCATCCTGCCCCTCTGGCCGGCTGAGTGC
*
474083 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
474138 GCATACAAAGTTCACTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
474187 GACAGCACAT
Statistics
Matches: 199, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 199 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGCA
ACACACAAAAGAAGACCACATCGATCCCTGACTTACCCATCCTGCCCCTCTGGCCGGCTGAGTGC
CCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:475878 original size:26 final size:26
Alignment explanation
Indices: 475842--475894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
475832 GTTGACTTAG
*
475842 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
475868 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
475894 G
1 G
475895 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:476738 original size:524 final size:521
Alignment explanation
Indices: 475735--476763 Score: 1576
Period size: 521 Copynumber: 2.0 Consensus size: 521
475725 GGGTTACGGT
* * * * *
475735 AGCAGGATCGACAGCACATAGAGGGGGACCTGATCGATCCCCGACTTGCGCATCCTGCCCCTCTG
1 AGCAAGATCGACAGCACATAGAGGGGAACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTA
* *
475800 GTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
66 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
**
475865 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCT
131 TAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCT
* * * * **
475930 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGTTGG
196 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCCCTGG
* * *
475995 AGAACCTGACCGGTGGCATTTGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTA
261 AGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTA
476060 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
326 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
476125 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAAT
391 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAAT
*
476190 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCCCAGGGTTGTGG
456 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCCCAGGGTTGTGG
476255 C
521 C
* * * * * *
476256 AGCAAGATCGATAGCACGTAGAGGGGAACCCGGTCGATCTCTGGCTTGCGCATCCCGCCCCTCTA
1 AGCAAGATCGACAGCACATAGAGGGGAACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTA
* * * * *
476321 GCCGACTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTC
66 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * * * * ** *
476386 TAAGCATCCAAAGTTTATTCCCAGTCTAAGATCTGATCGGGTCGAGGGTTACG-GGCAGCACATG
131 TAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTT--GTGGCAGCACATG
*
476450 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCCCT
194 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCCCT
* *
476515 GGAGAACCTGACCGGCGACATTAGGGTTCTGACGATCGGGGGGCCGGGGGGGTTGTGTGCACATG
259 GGAGAACCTGACCGGCGACATTAGGGTTCCGACGATC-GGGGGCC-GGGGGG-TGTGCGCACATG
* *
476580 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTGTCCCTCATCAAACCTCGAGAA
321 ATGTACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
476644 CTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
386 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTT
476709 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
451 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
476764 AGCTATATTT
Statistics
Matches: 456, Mismatches: 47, Indels: 7
0.89 0.09 0.01
Matches are distributed among these distances:
521 151 0.33
522 102 0.22
523 8 0.02
524 148 0.32
525 47 0.10
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (521 bp):
AGCAAGATCGACAGCACATAGAGGGGAACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTA
GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
TAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCT
GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCCCTGG
AGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTA
CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCCCAGGGTTGTGG
C
Found at i:477297 original size:26 final size:26
Alignment explanation
Indices: 477267--477319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
477257 GTTGACTTAG
477267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
477293 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
477319 G
1 G
477320 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:477562 original size:26 final size:26
Alignment explanation
Indices: 477526--477578 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
477516 GTTGACTTAG
477526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
477552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
477578 G
1 G
477579 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:478445 original size:26 final size:26
Alignment explanation
Indices: 478409--478461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
478399 GTTGACATAC
*
478409 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
478435 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
478461 G
1 G
478462 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:479069 original size:4 final size:4
Alignment explanation
Indices: 479060--479093 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
479050 CCGGCGTAGT
* *
479060 GCCC GCCC GCCT GCCC GCCC GCCT GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
479094 TCGTTTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.68, G:0.26, T:0.06
Consensus pattern (4 bp):
GCCC
Found at i:479076 original size:12 final size:12
Alignment explanation
Indices: 479059--479093 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
479049 GCCGGCGTAG
479059 TGCCCGCCCGCC
1 TGCCCGCCCGCC
479071 TGCCCGCCCGCC
1 TGCCCGCCCGCC
479083 TGCCCGCCCGC
1 TGCCCGCCCGC
479094 TCGTTTCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.66, G:0.26, T:0.09
Consensus pattern (12 bp):
TGCCCGCCCGCC
Found at i:479309 original size:26 final size:26
Alignment explanation
Indices: 479273--479323 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
479263 GTTGACTTAG
*
479273 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
479299 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
479324 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:480641 original size:903 final size:900
Alignment explanation
Indices: 478872--483606 Score: 6399
Period size: 903 Copynumber: 5.3 Consensus size: 900
478862 ATGCCTTCCG
* *
478872 AAAATCATGAAAAATAGAAAATGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
478937 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
479002 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C
* *
479067 CGCCTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAGGGAGTTCATTC
195 CGCCTGCCCGCCC-CCT----------TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
479132 CCAATCTAAGATCAGGCCGGA-TCGAGGGTTGCGGCAGCAGTAACTGCAGCACGCAGA-GGGGTC
249 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGAC
* * * * * * * *
479195 CCGATCGATCCTCAGCTTACGCACCCCGCC-CTTCTGGCTGGTTGAGCACCCGCACGCTTGTTTC
313 CCGATCGATCCCCGGCTTGCGCATCCCGCCTC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
479259 GTGTGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTA
377 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTA
* * * * * ** *
479324 TGATCGGACCGGATCGAGGGTTGAGTTAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGCATT
441 AGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATT
* ** * * * *
479389 TTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACCAGCGACGTTGGGGTTT
505 TTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
479453 CGACGATCGGGGGGCCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTCGGCCCTT
569 CGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
479518 ATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
633 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
479583 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
698 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
479648 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGAT
763 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * * * *
479713 GACGTCTACAAAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTGAAAAAATCTCGAACCGCAGA
828 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
479778 AAGTTTCA
893 AAGTTTCA
* *
479786 AATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
479851 ATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
** * * * *
479916 CCACCTACCACCCTATTAATGCATGGCTTGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
479981 TACCTGCCAGCCCCCTT-GTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGG
196 -GCCTGCCCGCCCCCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
480045 TTAGACCGGACTGAGGGTTACGGTAGCAGGATCAACAGCACACAGAGGGGGACCCAATCAATCCC
260 TCAGACCGGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * *
480110 CGGCTTGCACATCCCACCTCTCTGGTCGGCTGAACGCTCGCACGCTCGTTTCGTGGGTTGACTTA
325 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
480175 GGCATACGGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGATCAGA
390 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGA
* *
480240 CTGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTG-CGACATTTTTCTTCGTCGG
454 CCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCG-CATTTTTCTTCGTCGG
* *
480304 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGT
517 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-
* *
480369 GGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
581 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
480434 ATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
646 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
480499 ACCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
711 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
480564 CTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAATACAATGATCACGTCTACCAAG
776 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
** * *
480629 TTTGACGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAGAAAGTTTCA
841 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* *
480689 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
480754 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
480819 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG-C
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* ** * *
480883 -CC-G-CCGGCCCGATCGTTTAGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
196 GCCTGCCCGCCCCCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
480945 CGGACCGGATTGAGGATTGCGGTAGCAAGAT-AGACAGCACGCAGAGAGGGACCCGATCGATCCT
261 CAGACCGGACTGAGGGTTGCGGTAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * * * *
481009 CGACTTGCGCATCCCGTCTTTCTGCCCAGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTA
325 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
481074 GGCATAC---G---A-----AG--T-----T-C--A-TTC---CCAGTCTAAGATCGGACCAGAC
390 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGAC
* * * * * * *
481114 CGAGGGTTGTGGCAGCACATACTGGGCTCCGGCATGTGCTGGTCCCACGTTTTTCTTCGCCGGGT
455 CGAGGGTTGCGGCAGCACATGCTGGGCT-CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
481179 CACCAT--------CAT---CGGAGAACCTGATCGACGGCATTGGGGTTCTGACGATCGAGGGGG
519 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG
* * * * *
481233 CCGGGGGGTGTGCGCATATGATGTTCGGTGGCTGCTGGTACTTGGCCCTTATATTGGCCTCCTAT
583 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
481298 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
648 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
481363 TAGTAGCCATTAAAGTG-CTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACT
713 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
481427 TTGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAGT
778 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGT
** * * * * *
481491 TTGGGGTGAAGACTCTTTCCGAAAAAATTTTAAAAAATCTCGAGCCGTAAAAAGTTTAA
842 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* * *
481550 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGAGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
481615 ATTGTATAAATTTACAAGCCATAAAACTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
481680 TCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C
** * * * *
481745 CGCCCACCCGCCCTC-TCGTTTCGTCGGTTAGCTTAGGCATATGGAGTTCATTCGCAGTCTAAGA
195 CGCCTGCCCGCCCCCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * **
481809 TCAGATCGGATTGATGATTGTGGCA-CAGGATCGGCAGCACGCAGAGTGGGACCCGGCCGATCCC
260 TCAGACCGGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * *
481873 CGGCTAGCGCATCCCGCCGCTCTGGCCAGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
325 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
481938 GGCATACGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTACCAGTCTAA-ATCAGCTCGGA
390 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGA
*
482002 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
454 CCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** * *
482067 GCACCATCGCCGGAGCGTCGTTGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGG
518 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* *
482132 GCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTA
582 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
482197 TCCCCCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTG
647 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
482262 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCGTGTACCC
712 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
482327 TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAGATACAAGGATCATGTCTACCAAGT
777 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * *
482391 TTGGGGCCAAAACTTTTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCA
842 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* *
482450 AAAATCATGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
482515 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
** * * * *
482580 CCACCTACCACAGTATCGATCCACGACTTGCGCATCCTGTCTCTTTGGCCGACGTAGTG--C-CC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
482642 GCCTGCCCG-CCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
196 GCCTGCCCGCCCCCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
482706 C-GAACCTGACCGAGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGGGGACCCGATCGATCC
261 CAG-ACCGGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGA-GGGGGACCCGATCGATCC
* * * * * * *
482770 CCGGCTTGCGCATTCCACCCCTCTGGCCGGCTGACCACCTGTACGCTCGTTTCGTGGGTTGACTT
324 CCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
482835 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCAG
389 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAG
482900 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
453 ACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * ** * * *
482965 GGCACCATTGTCGAAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGATTCCGGCGATTGGGGG
517 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGG
* *
483030 GGCTGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
581 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
483095 ATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTACAGGTTTGCT
646 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
483160 GCCAGTAGCCAATAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
711 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
483225 CTTCGAGTTTTTAGCTGAATTTTTTTGGGCATACCAAAAAAAATACAAGGATGACGTCTACCAAC
776 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* *
483290 TTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCTCAAACCG-AAAAAGTTTCA
841 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* * *
483349 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCATGTGAAGGCCTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
483414 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
483479 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCC-AC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
*
483543 G--TGCCCGCCTGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
196 GCCTGCCCGCC--CCC-TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
483606 G
258 G
483607 CATACGGATT
Statistics
Matches: 3372, Mismatches: 374, Indels: 161
0.86 0.10 0.04
Matches are distributed among these distances:
861 330 0.10
862 179 0.05
863 4 0.00
864 95 0.03
865 70 0.02
866 5 0.00
867 1 0.00
870 1 0.00
873 77 0.02
874 3 0.00
875 2 0.00
877 4 0.00
878 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 3 0.00
888 3 0.00
889 69 0.02
890 9 0.00
893 1 0.00
895 3 0.00
896 68 0.02
897 20 0.01
898 126 0.04
899 675 0.20
900 518 0.15
901 62 0.02
902 82 0.02
903 753 0.22
904 7 0.00
913 5 0.00
914 191 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
GCCTGCCCGCCCCCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCC
GGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
Found at i:482866 original size:26 final size:26
Alignment explanation
Indices: 482837--482889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
482827 GTTGACTTAG
* *
482837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
482863 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
482889 G
1 G
482890 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:483189 original size:899 final size:892
Alignment explanation
Indices: 481075--483606 Score: 3625
Period size: 900 Copynumber: 2.8 Consensus size: 892
481065 GTTGACTTAG
* * *
481075 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
481140 CTCCGGCATGTGCTGGTCCCACGTTTTTCTTCGCCGGGTCACCA--T----CATC---GGAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGTCGAGCATCGTTGGAGAAC
* * * * * * * *
481196 CTGATCGACGGCATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCATATGATGTTCGG
131 CTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
481261 TGGCTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
481326 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG-CTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
481390 GACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTGTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGC
* ** *
481455 ATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGTGAAGACTCTTTCCGAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
* * * *
481520 TTAAAAAATCTCGAGCCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
454 TTAAAAAATCTCGAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
481585 ATGAAACTTCACGTGCAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAAACTGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
481650 GCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGTCTTGCGCAT
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
* * *
481715 CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTAGCTTA
648 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG---T-TCGTTTCGTCGGTTGGCTTA
* * ** * **
481780 GGCATATGGAGTTCATTCGCAGTCTAAGATCAGATCGGATTGATGATTGTGGCACAGGATCGGCA
709 GGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGATTACGGCACAGGATCGGCA
* * * * ***
481845 GCACGCAGAGTGGGACCCGGCCGATCCCCGGCTAGCGCATCCCGCCGCTCTGGCCAGCTGAGTGC
773 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTAGCGCATCCCACCCCTCTGGCCAGCTGACCAC
481910 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
481965 GCATGCGAAGTTCATTACCAGTCTAA-ATCAGCTCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
482029 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-GTC-GAGCATCGTTGGAGA
*
482094 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGC
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
482159 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAATCCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
482224 CCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
482289 GGGACACTTTCTTCAAATGGTCACAAAATCGTGTACCCTTCGAGTTTTTAGCTGAATTTTTTGTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
* * * *
482354 CATGCCAACAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTTTTCCAAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
* *
482419 TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCTTGC
453 TTTAAAAAATCTCGAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
482484 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
482549 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACAGTATCGATCCACGACTTGCGCA
582 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * * * *
482614 TCCTGTCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTTCGTTTCGTCGATTGGCTTAGGC
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
* * * *
482679 ATACGGAGTTCATTCCTAGTCTAAGATC-GAACCTGACCGAGGGTTACGGTAGTAGGATCGGCAG
712 ATACGGAGTTCATTCC-AGTCTAAGATCAG-ACCGGACCGAGGATTACGGCA-CAGGATCGGCAG
* * * * *
482743 CATGCAGAGGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCACCCCTCTGGCCGGCTGACCAC
774 CACGCAGA-GGGGGACCCGACCGATCCCCGGCTAGCGCATCCCACCCCTCTGGCCAGCTGACCAC
* * *
482808 CTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
482863 GCATAC-AGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
482927 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGAAGCATCGTTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-TGTCG-AGCATCGTTGGAG
* * *
482992 AACCTGACCGGCGGCATTGGGATTCCGGCGATTGGGGGGGCTGGGGGGTATGCGCACATGATGTG
128 AACCTGACCGGCGGCATTGGG-TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
483057 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
483122 ACACCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTTTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
483187 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * * * *
483252 GGCATACCAAAAAAAATACAAGGATGACGTCTACCAACTTTGGGGCCAAAACTGC-TTCCGAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAA
* *
483316 AATTTTAAAAAATCTCAAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
450 AATTTTAAAAAATCTCGAACCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
483381 GCCACGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
483446 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
580 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * *
483511 CATCCCGTCTCTCTGGTCGGCGTGGTGCCCACGTGCCCGCCTGCCCGTTCGTTTTGTCGGTTGGC
645 CATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C--GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
483576 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
706 TTAGGCATACGGAGTTCATT-CCAGTCTAAG
483607 CATACGGATT
Statistics
Matches: 1460, Mismatches: 154, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
889 69 0.05
890 24 0.02
895 2 0.00
896 58 0.04
897 23 0.02
898 122 0.08
899 508 0.35
900 536 0.37
901 61 0.04
903 55 0.04
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGTCGAGCATCGTTGGAGAAC
CTGACCGGCGGCATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTT
AAAAAATCTCGAACCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGATTACGGCACAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTAGCGCATCCCACCCCTCTGGCCAGCTGACCACCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:483619 original size:26 final size:26
Alignment explanation
Indices: 483580--483632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
483570 GTTGGCTTAG
483580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
483606 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
483632 G
1 G
483633 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:484317 original size:744 final size:743
Alignment explanation
Indices: 482826--484350 Score: 2485
Period size: 744 Copynumber: 2.1 Consensus size: 743
482816 TCGTTTCGTG
*
482826 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
* *
482891 TCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * ***
482956 CTTCGTCGGGGCACCATTGTCGAAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGATTCCGGC
131 CTTCGCCGGGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGATTCCGGC
* *
483021 GATTGGGGGGGCTGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
196 GATCGGGGGGCCTGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
483086 TGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTAC
261 TGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTAC
*
483151 AGGTTTGCTGCCAGTAGCCAATAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
326 AGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
483216 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATACCAAAAAAAATACAAGGATGACG
391 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATACCAAAAAAAATAAAAGGATCACG
* * *
483281 TCTACCAACTTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCTCAAACCGAAAAAGTT
456 TCTACCAACTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAGTT
* * *
483346 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCATGTGAAGGCCTAAGGG
521 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAACGAAACTTCACGTCAAGGCCTAAGGG
*
483411 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
586 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * *
483476 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCC
651 AACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
** * * * **
483541 ACGTGCCCGCCTGCCCGTTCGTTTTGTC
716 ACCCGCCCGCCCGCCCGCTCATTTCATC
* * *
483569 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
** *
483634 TCAGACCAGAGTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGCATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
483699 CTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCTGC
131 CTTCGCCGGGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGATTCCGGC
* *
483764 GATCGAGGGGGCCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
196 GATCG-GGGGGCCTGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
483829 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTA
260 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTA
*
483894 CAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
325 CAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
483959 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCAT
390 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATACCAAAAAAAATAAAAGGATCAC
* * * *
484024 GTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCATAAAAAG
455 GTCTACCAACTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACC-GAAAAAG
* * * *
484089 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTCAAGGCTTAGG
519 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAACGAAACTTCACGTCAAGGCCTAAG
*
484154 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
584 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
484219 TAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
649 TAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
*
484284 CCGCCCG-CCGCCCGCCCGCTCATTTCATC
714 CCACCCGCCCGCCCGCCCGCTCATTTCATC
* *
484313 GGTTGGCTTAGGCGTACGGAGTTCATTGCCAGTCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
484351 ATCAGACTGG
Statistics
Matches: 720, Mismatches: 60, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
743 180 0.25
744 347 0.48
745 193 0.27
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (743 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGCCGGGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGATTCCGGC
GATCGGGGGGCCTGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACACCCATAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATACCAAAAAAAATAAAAGGATCACG
TCTACCAACTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAACGAAACTTCACGTCAAGGCCTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
ACCCGCCCGCCCGCCCGCTCATTTCATC
Found at i:485208 original size:20 final size:20
Alignment explanation
Indices: 485183--485228 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
485173 GCTAGCGTAG
* *
485183 TGCCCGACTGCTCGCCCGCC
1 TGCCCGACTGCCCACCCGCC
* *
485203 TGCCCGCCTGCCCACCTGCC
1 TGCCCGACTGCCCACCCGCC
485223 TGCCCG
1 TGCCCG
485229 CTCGTTTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.04, C:0.57, G:0.24, T:0.15
Consensus pattern (20 bp):
TGCCCGACTGCCCACCCGCC
Found at i:485446 original size:26 final size:26
Alignment explanation
Indices: 485410--485462 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
485400 GTTGACTTAG
* *
485410 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
485436 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
485462 G
1 G
485463 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:487806 original size:26 final size:26
Alignment explanation
Indices: 487776--487828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
487766 GTTGACTTAG
*
487776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
487802 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
487828 G
1 G
487829 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:490231 original size:895 final size:892
Alignment explanation
Indices: 486902--490626 Score: 4601
Period size: 930 Copynumber: 4.2 Consensus size: 892
486892 GTTGACTTAG
* * * *
486902 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
486967 CTCGGGCATGTGCTGGTGCCACATTTATCTTTGCCGAGGCACCATCGTCGGGGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGAGA
* * * ** *
487032 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGAGGGGTGTCCGCACATGATGTG
131 ACCTGACCGGCGGCATTAGGGTT-CGACGATCGGGGGGCCG-GGGGGGTGTGTGCACATGATGTA
* * * *
487097 CGATGGGTGCTGGTACTTGGTCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
487162 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAGT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
487227 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
487292 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGTTCCAAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * **
487357 ATTTAAAAAAACCCCGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
487422 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
487487 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
487552 CAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTTGCTCATTTCGTCAATTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCT-CCC-C-CGCTCGTTTCGTCAGTTGGCTTAG
* *
487617 GCATAAGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
710 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * *
487682 GCACAGAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCAAGCTAAGCAC
775 GCAC-GAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGCCGA-CTGAGCGC
487747 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
487802 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
487867 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGAGA
* *
487932 A-CTGACCGGCGGGCATTAGGGTTCGGCGATCGGGGGGCCGGGGCGGT-TGTTGCATAACATGAT
131 ACCTGACCGGC-GGCATTAGGGTTCGACGATCGGGGGGCCGGGGGGGTGTG-TGC---ACATGAT
* * *
487995 GTATGATGGGTACTTGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCAATCAAACCTCCAGAG
191 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGG--CCCCTATCCCTC-ATCAAACCT-C-GAG
* * *
488060 AACTCCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCCAGCAGCCATTTAAGT
251 AACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGT
* * * *
488125 ATCTGAAATGGGGACACTTTTATCAAATAGTCACAAAATACTTGTACACTTTTC-AGTGTTTAGA
314 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACAC--TTCGAGTTTTTAG-
* * * *
488189 CTGAATTTTATTTATTGGCCATGCCCAAAAAAAATTCAACGATCATTGTCTACCAAGTCTTGGGG
375 CTGAATTTT-TTT-GT-G-CATG-CCAACAAAAATACAAGGATCA-TGTCTACCAAGT-TTGGGG
* ** * * * * *
488254 CCCAAAACTAGCTTCCGCAAAAATTGTG-AAAAATCCCGAAACCGCAAAAATTTTTGAAGATTCA
433 -CCAAAACT-CCTTCCAAAAAAATT-TGAAAAAATCCCG-AACCGTAAAAA-GTTTCAAAAATCA
488318 TGAAAAATAGAAAACGAGTCGTCTTGCCATGGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTC
493 TGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGT-
* * * *
488382 ATGAATTTAATTAAGCCATAAAAATAGCAGTTGACACGCAAAAAATATGAAGATGT-CCTAAACC
556 ATGAATTT-A-CAAGCCATAAAAATGGCA-TTGGCACG-TAAAAATATGAAGATGTGCCTAAACC
* * *
488446 CAGCCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
617 CA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC
* ** *
488511 CGCCCGTCCGCCCTCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCTGAGTCTAAGAT
677 CG-CC-TCC-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
* * * ** * *
488576 CGGACCGGATCGATGGTTACGGCAGTAGGAAC-AGCAGCACGCAGAGGGGGACTCGGCCGATCCC
739 CAGACCGGACCGAGGGTTGTGGCAGTAGGATCGA-CAGCACG-AGAGGGGGACCCGGCCGATCCC
** * ** *
488640 CAGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGTGTTGACTTA
802 TGGCTTGCGCATCCCGCCCCTCT-GCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* *
488705 GGCATATGGAGTTCATTCCCAGTGTAA
866 GGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
488732 GCATGCGGAGTTCATTGCTAGTCTAAGAGT-GGACCGGACCGAGGGTTGCGGTAGCACATGTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
488796 GCTC-GACCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCCCGGA
65 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGA
* * *
488860 GAACCTGACCGAC-GCATTGGGGTTACAACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATG
129 GAACCTGACCGGCGGCATTAGGGTT-CGACGATC-GGGGGGCCGGGGGGGTGTGTGCACATGATG
* *
488923 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTC
192 TACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
*
488988 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
489052 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
489117 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
489181 AAATATGAAAAAATCCTGAATCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTTGT
451 AAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGT
*
489245 CTTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
489310 GCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
489375 GCAG-ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CTCACCCGCTCGTTTCATCAGTTGGCTTA
645 GC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTCCCCCGCTCGTTTCGTCAGTTGGCTTA
* * *
489438 GGCATACGGAGTTCATTCCCAATCCAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAT
709 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * *
489503 AGCACGTAGAGGGGAACCCGGTCGATCTCTGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCG
774 AGCACG-AGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCT-GCCGACTGAGCG
* * *
489568 CCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
489624 GCATCCAAAGTTTATTCCCAGTCTAAGATCTGACCGGGCCGAGGGTTACGGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GGCAGCACATGCTGG
**
489689 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCCCCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGAG
* *
489754 AACCTGACCGGCGACATTAGGGTTCTGACAATCGGGGGGCCGGGGGGGTTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTAGGGTTC-GACGATCGGGGGGCCGGGGGGG-TGTGTGCACATGATGT
*
489819 ACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTGTCCCTCATCAAACCTCGAGAACTCAC
193 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
489883 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
489948 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-ATATTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTT
* * * *
490012 GTGCATGCCAACAAAAATGCAAGGATGATGTCTACCAAGTTTGGGGCGAAAACTCCATCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
490077 AATTTTAAAATATCTCGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
490142 TGCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
490207 ATCGGCACGTAAAAATATGAAGATGTGCCTTAACACACCTACAACCCTATCGATCCACGGCTTGC
582 ATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
490272 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCATCAGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-TCC-CCCG----CTCGTTTCGTCAGTTGG
*
490337 CTTAGGC--A-GG-G----TT----A-C--AG-T---A---G--C-A-GGAT-TGGC---A-G--
705 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGAT
* * ** * * * *
490369 C-AC-G--C-AGAGGAGGACCCAGTAGATCCCCGGCCTGCGCATCCCACCCCTCTGGCCGGCTGA
770 CGACAGCACGAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCT-GCCGACTGA
* *
490429 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
490488 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *** *** *
490553 CTTGGGCATGTGCTGCTGCCACATTTTTCTTTATCGGGGCACCATCGCCGGAGCATTGTCGGGGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGAGA
490618 ACCTGACCG
131 ACCTGACCG
490627 ATGGCAGTAG
Statistics
Matches: 2466, Mismatches: 282, Indels: 191
0.84 0.10 0.06
Matches are distributed among these distances:
863 78 0.03
864 137 0.06
866 1 0.00
868 1 0.00
869 1 0.00
870 1 0.00
872 1 0.00
873 1 0.00
876 4 0.00
877 3 0.00
878 1 0.00
879 1 0.00
881 1 0.00
884 1 0.00
887 1 0.00
888 2 0.00
890 1 0.00
891 2 0.00
892 216 0.09
893 126 0.05
894 185 0.08
895 274 0.11
896 6 0.00
897 2 0.00
898 9 0.00
899 29 0.01
900 194 0.08
901 55 0.02
902 29 0.01
903 34 0.01
904 38 0.02
905 45 0.02
906 50 0.02
907 70 0.03
908 17 0.01
909 11 0.00
910 13 0.01
911 15 0.01
912 19 0.01
913 5 0.00
914 5 0.00
915 19 0.01
916 13 0.01
917 16 0.01
918 15 0.01
919 30 0.01
920 60 0.02
921 76 0.03
922 40 0.02
923 8 0.00
924 17 0.01
925 25 0.01
926 79 0.03
927 38 0.02
929 13 0.01
930 304 0.12
931 26 0.01
932 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCCCCGGAGA
ACCTGACCGGCGGCATTAGGGTTCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTACG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCTCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGA
GAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGCCGACTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:490492 original size:26 final size:26
Alignment explanation
Indices: 490462--490514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
490452 GTTGACTTAG
490462 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
490488 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
490514 G
1 G
490515 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:490757 original size:26 final size:26
Alignment explanation
Indices: 490721--490773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
490711 GTTGACTTAG
*
490721 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
490747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
490773 G
1 G
490774 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:491641 original size:26 final size:26
Alignment explanation
Indices: 491605--491657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
491595 GTTGACATAT
*
491605 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
491631 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
491657 G
1 G
491658 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:492491 original size:26 final size:26
Alignment explanation
Indices: 492462--492531 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
492452 TAGGCATATG
492462 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
**
492488 GAGTTCATTCCCAGTCTAAGCATATG
1 GAGTTCATTCCCAGTCTAAGCATACA
*
492514 GAGTTCATTCCTAGTCTA
1 GAGTTCATTCCCAGTCTA
492532 TGATCAGACC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACA
Found at i:494163 original size:26 final size:26
Alignment explanation
Indices: 494127--494179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
494117 GTTGGCTTAG
*
494127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
494153 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
494179 G
1 G
494180 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:494856 original size:26 final size:26
Alignment explanation
Indices: 494820--494872 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
494810 GTTGGCTTAG
*
494820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
494846 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
494872 G
1 G
494873 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:495590 original size:26 final size:26
Alignment explanation
Indices: 495554--495606 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
495544 GTTGGCTTAG
*
495554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
495580 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
495606 G
1 G
495607 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:496153 original size:732 final size:734
Alignment explanation
Indices: 494588--496306 Score: 2912
Period size: 732 Copynumber: 2.4 Consensus size: 734
494578 AATGCCTTCC
*
494588 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAT
* *
494653 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
66 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAA
494718 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
494783 CCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
196 CCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
494848 ATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
261 ATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGAGCT
***
494913 CGAGCATGTCCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGTGA
326 CGAGCATGTCCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCAACGA
* *
494978 CATTGGGATTCCGACAATCGAGGGCGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
391 CATTGGGATTCCGACAATCGAGGGCGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
* *
495043 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCGCTTAAAAA
456 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
* *
495108 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGATACTTTTT
521 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAATTTTT
*
495173 TAAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAACAA
586 TAAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
495238 AAATACAAGGATCACATCTATCAAGTTTGGGGCCAAACCTACCTCTGAAAAAATTTAAAAAAATC
651 AAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTACCTCTGAAAAAATTTAAAAAAATC
495303 CCGTACAGCAAAACGTTTT
716 CCGTACAGCAAAACGTTTT
* * * *
495322 AAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTAAAGGCTTCAGGGAT
1 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAT
*
495387 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
66 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAA
*
495452 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
*
495517 CCGCCCGTCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
196 CCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
495582 ATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGAGCT
261 ATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGAGCT
* * * *
495647 CGGGCATGTCCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCAACGG
326 CGAGCATGTCCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCAACGA
* *** * * * *
495712 CATTGGGGTTCCGGTGATCG-GGGGGCCCGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGG
391 CATTGGGATTCCGACAATCGAGGGCGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
*
495776 TACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
456 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
495840 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAATTTTT
521 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAATTTTT
495905 TAAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAAAAA
586 TAAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
495970 AAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTCCCTCTGAAAAAATTTTAAAAAATC
651 AAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTACCTCTGAAAAAATTTAAAAAAATC
496035 CCGTACAGCAAAAAC-TTTT
716 CCGTACAGC-AAAACGTTTT
* * *
496054 GAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAAGGAT
1 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAT
* *
496119 CATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGAAGAAATATGAAGATGTCCCTAAA
66 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAA
* * *
496184 CCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
* * * * *
496249 CCTCCCG--C-C-CGCTCGTTTCATCGTTTGGCTTAGGCATGCGGAGTTCATTCCGAGTCTA
196 CCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
496307 GGATCAGACC
Statistics
Matches: 926, Mismatches: 58, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
728 44 0.05
729 1 0.00
730 1 0.00
732 429 0.46
733 62 0.07
734 389 0.42
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (734 bp):
GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAT
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
CCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGAGCT
CGAGCATGTCCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCAACGA
CATTGGGATTCCGACAATCGAGGGCGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAATTTTT
TAAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTACCTCTGAAAAAATTTAAAAAAATC
CCGTACAGCAAAACGTTTT
Found at i:497370 original size:26 final size:26
Alignment explanation
Indices: 497341--497394 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
497331 TGGGTGACTT
497341 AGCATACGGAGTTCACTCCCAGTCTA
1 AGCATACGGAGTTCACTCCCAGTCTA
*
497367 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCACTCCCAGTCTA
497393 AG
1 AG
497395 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
AGCATACGGAGTTCACTCCCAGTCTA
Found at i:497735 original size:903 final size:895
Alignment explanation
Indices: 495530--499393 Score: 4756
Period size: 878 Copynumber: 4.3 Consensus size: 895
495520 CCCGTCCGCT
* * *
495530 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGT-GGGTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * *
495595 TCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGGCATGTCCTG
64 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTG
** * *
495660 GTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G-----CCGGAGAACCTGACCAACGGCA
129 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCA
* ** * *
495714 TTGGGGTTCCGGTGATCGGGGGGCCCGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTAC
194 TTGGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
495779 TTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
259 TTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
495844 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAATTTTTTAAA
324 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
495909 ATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
389 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
* * * * *
495974 ACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTCCCTCTGAAAAAATTTTAAAAAATCCCGT
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * ** * *
496039 ACAGCAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACCT
519 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
496104 GAAGGCTTAAAGGATCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGAAGAAATAT
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
496169 GAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGC
649 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
496234 CGGCGTAGTGCCTGCCCTCCCGCCCGCTCGTTTCATCGTTTGGCTTAGGCATGCGGAGTTCATTC
714 CGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * * ** *
496299 CGAGTCTAGGATC-AGACCAAACTGAGGGTTCCGATAGCAAGATCGGCAGCACA-CAGAGGGGGA
779 CCAGTCTAAGATCGA-ACCGAACTGAGGGTTGCGGCAGCAAGATCAGCAGCA-AGCAGAGGGGGA
* * * * * *
496362 CCTGACCTATCCTCAGCTTAAGCATCCC-GCCCTTTGGCCGGCTGAGCGACCGTA
842 CCCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCG-CCGTA
* * * *
496416 CACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC-AAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGG-TGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
496480 TCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTG
64 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTG
** * * *
496545 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGACCATCTCCGAAGAACCTGACCGGCGGCA
129 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCA
** * *
496610 TTGGGGTTTTGGCGATCGGGGGGCCCGGGGGGGTGTGCGCAAATGATGTGCGAT-GGTGCTGGTA
194 TTGGGGTTCCGGCGATCGGGGGG-CTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
496674 CTTGGCCCTTATAGTGGCCCCTATCCCTCATCAAACCTCGTGAACTCACACCCCCTTAAAGAGCA
258 CTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
496739 TTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCA
323 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
496803 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAAAAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
496868 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** * *
496933 AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
518 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
496998 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAGAAAT
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAAT
*
497063 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTTCTCTCT
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTCT
* * *
497128 GGCTGACGTAGTGCCCTGCCTGCCTGCCC-CCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGAA
711 GGCCGACGTAGTGCCC-G-C--CCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
* * * * *
497192 GTTCATTCCCAGTCTAAGATC-AGACTGGACTGAGGGTTACGGCAGCATGATCGGCAGCAAGCAG
771 GTTCATTCCCAGTCTAAGATCGA-ACCGAACTGAGGGTTGCGGCAGCAAGATCAGCAGCAAGCAG
**
497256 AGGGGGACCCGACCGATTCCCCAGCTTGTGCATCCCACCCCTCTGGCCGGGCTGAGCGCCAGTA
835 AGGGGGACCCGACCGA-TCCCCAGCTTACGCATCCCACCCCTCTGGCC-GGCTGAGCGCC-GTA
*
497320 CGCTCGTTTCGTGGGTGACTTAGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTC
1 CGCTCGTTTCGTGGGTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
497385 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGAACATGCTTGGCTCGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * *
497450 GTCACAATTTTCTTCGTCAGGGCACCATCGTCGAAGCATCCCCGGAGAACCTGACCGATGGCATT
131 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATT
* * *
497515 GGGGTTTCGGCGAT-AGAGGGCTGGGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTT
196 GGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
497578 GGCCCTTATATTTGCCCCCTATCCATCATCATACGTTGAGAACTCACACCCCCTTAAAGAGCATT
261 GGCCCTTATA-TTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
497643 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATAGGGACACTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * **
497708 TGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATACATACCAACCAAAATA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
* *
497773 CAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCGAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
497837 CTGTAGAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
520 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
497902 AAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATG
585 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
497967 AAGATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGCC
650 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
498032 GACGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTGA
715 GACGTAGT----GCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
* *
498097 TTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCAGCAGCATGCAGAGGGGG
776 TTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAAGATCAGCAGCAAGCAGAGGGGG
* *** * * *
498162 ACCC-AGTCGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGGACGCA
841 ACCCGA-CCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGC-GCCGTA
*
498218 CGCTCGTTTCGT-GG-G---T----T---GA---C-TT----G----GGCATACGGAGTTCATTC
1 CGCTCGTTTCGTGGGTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** *
498259 CCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * * *
498324 GCCACATTTTTCTTCACCGGAGCACCATTGTTGGAGCATCACCGAAGAACCTGACTGGCGGCATT
131 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATT
* * * * *
498389 GGGGTTCCGACGATCGGTGGGGTTGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAAAT
196 GGGGTTCCGGCGATCGG-GGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG-TAC
* * * *
498454 TTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCTCACCCCCTTAAAGAACA
259 TTGGCCCTTATA-TTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* ** * *
498519 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCATCTGAAATGGGGACAGTTTTTGCA
323 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
498584 AATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
* * *
498649 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTCCCAAAAAATTTTAAAAAATCCCA
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
498714 AACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGTCGTCTTGCCATGAAATTTCACG
518 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
498778 AGAAGGCTTAAGGGAACATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATA
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
498843 TGAAGATGTGCCTAAACCCAGCTACCACCCTATCAATACACGGCTTGCGCATCCCGTCTCTCCGG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * ** *
498908 -C--C--A--GCCCG----CCCGTCCGTTTGTTTCGTCGGTTGGCTTAGTTATACGGAGTTCATT
713 CCGACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
* * * * * * * * *
498962 CCCAGTCTAAGATCGAACTGGACCGCGGGGTGTGGCAGCAAGATCAGCAACACGCATAGGGGGAC
778 CCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAAGATCAGCAGCAAGCAGAGGGGGAC
** * * *
499027 CCGGTCGATCCCCGGCTT-CGCATCCCACCCCTCTGGCCGACTGATGAC-CCGAA
843 CCGACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCTGA-G-CGCCGTA
499080 CGCTCGTTTCGTGGGTTGACTTAGTTATACGGAGTTCATTCCCAATATAAGCATACGAAGTTCAT
1 CGCTCGTTTCGTGGG-TGACTTAG-----C--A--T-A----C-------G-----G-AGTTCAT
* * *
499145 TCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
38 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAG
* * *
499210 CACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGTCGGAGC
103 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * *
499275 ATCACCGAAGAACCTAACCGACGGCATTGGGGTTCCAGTGATCGTGGGGG-TCGGGGGGGTGTGC
168 ATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCT-GGGGGGGTGTGC
** *
499339 GCACATGATGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCTCTATCCC
231 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCC
499394 CATTAAAGTG
Statistics
Matches: 2590, Mismatches: 288, Indels: 173
0.85 0.09 0.06
Matches are distributed among these distances:
862 39 0.02
863 111 0.04
864 1 0.00
865 1 0.00
867 5 0.00
868 1 0.00
873 1 0.00
874 137 0.05
875 2 0.00
876 13 0.01
877 27 0.01
878 334 0.13
879 74 0.03
881 1 0.00
882 1 0.00
883 1 0.00
885 102 0.04
886 41 0.02
888 2 0.00
889 1 0.00
893 1 0.00
895 223 0.09
896 244 0.09
897 48 0.02
898 23 0.01
899 32 0.01
900 138 0.05
901 213 0.08
902 285 0.11
903 246 0.09
904 28 0.01
905 1 0.00
906 2 0.00
910 1 0.00
912 1 0.00
913 23 0.01
914 185 0.07
915 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CGCTCGTTTCGTGGGTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATT
GGGGTTCCGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAAGATCAGCAGCAAGCAGAGGGGGACCCG
ACCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCGTA
Found at i:499176 original size:26 final size:25
Alignment explanation
Indices: 499106--499182 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 25
499096 TGACTTAGTT
* *
499106 ATACGGAGTTCATTCCCAATATAAGC
1 ATAC-GAGTTCATTCCCAGTCTAAGC
*
499132 ATACGAAGTTCATTCCCAGCCTAAGC
1 ATACG-AGTTCATTCCCAGTCTAAGC
499158 ATACAGAGTTCATTCCCAGTCTAAG
1 ATAC-GAGTTCATTCCCAGTCTAAG
499183 ATCAGACCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.02
26 43 0.96
27 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (25 bp):
ATACGAGTTCATTCCCAGTCTAAGC
Found at i:499609 original size:26 final size:26
Alignment explanation
Indices: 499580--499632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
499570 GTTGACTTAG
*
499580 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
499606 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
499632 G
1 G
499633 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:500499 original size:26 final size:26
Alignment explanation
Indices: 500470--500522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
500460 GTTGACTTAG
500470 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
500496 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
500522 G
1 G
500523 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:504321 original size:875 final size:881
Alignment explanation
Indices: 499713--504761 Score: 6280
Period size: 901 Copynumber: 5.7 Consensus size: 881
499703 GCTGGGGCAC
* * ** * *
499713 CATCGTCGGAGAACTTGACC-GAGGCATTAAGGTTCCGATGATCGAGGGGGTCGGGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCG
*
499777 CACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
499842 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
499907 GTGTTTGAAATGGGGATTA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
195 GTGTCTGAAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
499971 TGAATTTTTTTGTG-ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
500035 CCTTCCAAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
*
500100 ACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * *
500165 GCAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * * * *
500230 CCACGGCTTGTACGTCCCGTTTCTCTGGCC-GAGTTAGCGCCCGCCCGCCCGCCCG-TCCGCTCG
519 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTA-TGCCCGCCCGCCCGCCCGCT-CGCTCA
* * * * *
500293 TTTTGTCGGTTGGCTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTT
582 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * *
500358 ACGGTAGCAGGATCGACAGCACGTAGAGGGGGATCC-AGCCGATCCTCAGCTTGCGCATCCC-CT
647 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCC-CGGCTTACGCATCCCAC-
* * *
500421 CCCTCTGGCCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
709 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * ** *
500486 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGATGGTTATGACAGC
774 CCCAATCTAAGCAT-CAGAG-T-A-T-CC-G-----GACT--A---GA-C-A--GTTGCGGCAGC
** * * * * **
500551 ACATGCTGGGCTCAAGCATGTGCTGGTGTCGAATTTTTTCTTCGCCAAGGCACCATCGTTGGAG
819 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGAGGCACCATCGTCAGAG
** * * *
500615 CATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCA
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
*
500680 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
500745 CGAAAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
500810 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * ** *
500875 GAATTTTTTTGTACATGCCAAAAAAAA-ACAAGGATCACGTCTACCACGTTTGGCTCAAAAACTC
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* **
500939 TTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATA-AAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* *
501002 CGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
501067 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATC
455 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * ** * *
501132 CATGACTTGCGTATCCCGTCTCTCTGGCCGGCGTAACGGTCGCCCACCCGCCCGCCCGCTCATTT
520 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATGCCCGCCCGCCCGCCCGCTCGCTCATTT
* * ** *
501197 TGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGATC-GAACCGAGGGTTGC
585 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC
* * * * * * * ** *
501261 GGTAGCTGGATCGACAGCACGCAGAGGGGGACCCGATCGATTCTCGACTTGCGCATGCCGTCGCT
649 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGA-TCCCGGCTTACGCATCCCACCCCT
* *
501326 CTGCCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
713 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * ** * *
501391 GTCTAAG-ATC-G-G-AT-CGGA-TCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTGTGCT
778 ATCTAAGCATCAGAGTATCCGGACTAGACAGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *
501450 GGTGCCGCATTTTTCTTCATCGGGGCACCA---T-----
843 GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAG
* * * *
501481 CA-C--CGGAGAACCTAACCGGCGGCATTGGGGTTCCAATGATCGGGGGGCCAGGGGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* *** *
501543 ACATGACGCATGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTACCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
501607 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
501671 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGGTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
501736 AATTTTTTTGTGCATGCC-AACAAAATACAAGGATCACATCCACCAAGTTTGGGAG-CAAAACTC
261 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTC
* * ** *
501799 CATCCGAAAAAATTTTAAAAAATCCCAAACCAAAAAAAGTTTTCAAAAGTCGTGAAAAATAGAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCGTGAAAAATAGAAA
* * * *
501864 ACAAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * **
501929 ACAAAAATGGCTTTGGCACGTAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * * *
501994 CCACGGCTTGCGCGTCCCATCTCTCTGGTCGACGTTGTGCCCCCCCGCCCGTCCGCCCCCTCGTT
519 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATGCCCGCCCGCCCGCCCGCTCGCTCATT
* * *
502059 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGACCA-AACAGGACCGAGGGTTG
584 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTG
* * * * *
502123 TGGCAGCAGGATCGGCAACACGCAGAGTGGGACCCGACCGATCCCCGGCTTATGCATCCCACCCC
648 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTACGCATCCCACCCC
* * * * *
502188 TCTGGCTGACTGAGCACCTGCACGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
712 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
** *
502253 AATCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTTAGGCAGCACT
777 AATCTAAGCAT-CAGAG-T-A-T-CC-G-----GA-C----TAGA-C-A--GTTGCGGCAGCACA
* *
502318 TGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAG
822 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAG
* *
502378 CATCGTCGGAGAACCTGACCTGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * *
502443 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACGTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
502508 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
502573 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
502638 AA-TTTTTTGTGCATGCCAAAAAGAATACAAGGATCATGTCTACCAAG-TTGGGGCCAAAACTCC
261 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * ** *
502701 TTCCGAAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTCTCAAAAATCATGAAAAATAGAAAAC
326 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
502766 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
391 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * **
502831 AAAAATGGCATTGGTACGCAGAAATATGAAGATTTCCCTAAGCCCAGCTACCACCGAAAT-GATC
456 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATC
* *
502895 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAAT--------GCCCG--C-C-CGCTCATTA
520 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATGCCCGCCCGCCCGCCCGCTCGCTCATTT
* * * *
502948 CGTCGGTTGGCTTAGGCATGCAGACTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
585 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * ** * * *
503013 GCAGCAGAATTGGTAGCACACAGAGGGGGACCC-AGCGGAGCCCCGGCTTACGCATCCCACCCCT
650 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGA-TCCCGGCTTACGCATCCCACCCCT
* * * * *
503077 CTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGACTTCATTCCCA
713 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
503142 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGAGGCAGCACTT
778 ATCTAAGCAT-CAGAG-T-A-T-CC-G-----GA-C---T-AGA-C-A--GTTGCGGCAGCACAT
* ** * * *
503207 GCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCTCCATCGTCGGAA
823 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAG
** * *
503266 CATCGTCGGAGAACCTGACCTACGGCAATGGGGTTCCGGA-GATCGGGGGGTCGAGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGCCG-GGGGGTGTGC
* * * ** *
503330 GCACATGATGTGCGATGGGTGCTGGTACTTGTCCCGTATAATATCCCCCTATCCCTCATCAAACT
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
503395 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
503460 AGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
503525 TGAATTTTTTTGGGCGTGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
503590 CCTTCCGAAAAAATTTTAAAACATCCCGAATCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
503655 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
503720 ATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACTTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
503785 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTTATGCCCGCCCGCCCGCCCG-TCGCTTATT
519 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATGCCCGCCCGCCCGCCCGCTCGCTCATT
* ** * * *
503849 CCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGC
584 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * *
503914 GGCAGTAGGATCGATAGTAGGCAGAGGGGGACCCGATCGATCCCGGCTTACGCATCCCGCCCCTC
649 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTACGCATCCCACCCCTC
* *
503979 TAGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
714 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
* ** *
504044 TCTAAG-AT-TG-G-A-CCGGACT-GACAGTTGCGGCAGCATC-CCCTGGGCTCGGGCATGTGTT
779 TCTAAGCATCAGAGTATCCGGACTAGACAGTTGCGGCAGCA-CATGCTGGGCTCGGGCATGTGCT
*
504102 GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAG
843 GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAG
* * *
504141 CATCGTCGGAGAACCTGACAGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCA
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
* * * *
504206 CCCATGATGTACGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
504271 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
504336 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
504401 GAATATTTTTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
504466 CTTCAGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
504531 CGAGTCGTCTTGCCATGAAGA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 CGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
504595 ATAAAAATGGCATTGGTCACGTAGGAATACTATGGAAGATGTGCTTAAACCCAGCCTACCACCCT
454 ATAAAAATGGCATTGG-CACGCA-GAA-A-TAT-GAAGATGTGCCTAAACCCA-CCTACCACCCT
* * *
504660 AT--ATCCA-GGCTTG-GCAT-CCGTC-CTCTGGCCAGCG-TA-GTCCCGCTCTG-CCGCCTGCT
513 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATG-CCCGC-CCGCCCGCCCGCT
*
504716 CGCTC--TTCATCGGTTGGCTTAGGCATACGGAG-TCATTCCCAGTCTA
576 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
504762 GGTGTACGGA
Statistics
Matches: 3637, Mismatches: 415, Indels: 220
0.85 0.10 0.05
Matches are distributed among these distances:
859 6 0.00
860 170 0.05
861 82 0.02
862 52 0.01
863 366 0.10
864 3 0.00
865 2 0.00
866 3 0.00
867 1 0.00
870 1 0.00
871 2 0.00
872 14 0.00
873 25 0.01
874 33 0.01
875 536 0.15
876 19 0.01
877 8 0.00
878 8 0.00
879 14 0.00
880 17 0.00
881 13 0.00
884 2 0.00
885 7 0.00
887 2 0.00
888 323 0.09
889 260 0.07
890 45 0.01
891 226 0.06
892 6 0.00
893 1 0.00
894 2 0.00
897 4 0.00
898 3 0.00
899 6 0.00
900 243 0.07
901 577 0.16
902 229 0.06
903 313 0.09
904 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATGCCCGCCCGCCCGCCCGCTCGCTCATTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTACGCATCCCACCCCTCTG
GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
TAAGCATCAGAGTATCCGGACTAGACAGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAG
Found at i:506565 original size:26 final size:26
Alignment explanation
Indices: 506534--506637 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
506524 TTTACTTAGC
506534 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
506560 CATACAGAGTTCTTTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
506586 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
506612 CATA-TGAAGTTCATTCCCAGTCTAAG
1 CATACAG-AGTTCATTCCCAGTCTAAG
506638 ATCGAACCGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 1 0.01
26 72 0.99
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:506926 original size:26 final size:26
Alignment explanation
Indices: 506889--506941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
506879 GTTGACTTAG
506889 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
506915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
506941 G
1 G
506942 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:508707 original size:26 final size:26
Alignment explanation
Indices: 508667--508722 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
508657 TGGGTTGACT
*
508667 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
508693 TAAGCGTACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
508719 TAAG
1 TAAG
508723 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:509601 original size:26 final size:26
Alignment explanation
Indices: 509572--509624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
509562 GTTGACTTAG
*
509572 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
* *
509598 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
509624 G
1 G
509625 ATTGTATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:509842 original size:902 final size:899
Alignment explanation
Indices: 506699--510269 Score: 4841
Period size: 902 Copynumber: 4.0 Consensus size: 899
506689 CTGGCGTAGT
* * * *
506699 GCCCGCCCGCTCGTTTCGTCTGTTGGCTCAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
506764 TGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGAGGACCCGGCCGATCCCTTGCTT
66 -AGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGA-GACCCGGCCGATCCCTAGCTT
* *
506829 GCGCATCCCGCCCCTTTACCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATA
* * *
506894 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGG
* * *
506959 GTTGCGGCAGCACAT-TTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACC
259 GTTGCGGCAGCACATGCTT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * ** *
507023 AT---C---G---C--CGGAGAACTTGATCGATGACATTAGGGTTTCGGCGATCGGGGGGCCGGG
323 ATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTTCGGCGATC-GGGGGCCGGG
* * **
507077 TGGGGAGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCC
386 -GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* **
507142 TAATCAAACCTTTAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAG
450 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
507206 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
515 TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
507271 AGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * * *
507335 GGCCAAAACTCCTTTCGAAAATATTTTAAAAAATCCCAAACCA-CAAAAAGTTTT-GAAAATCGT
645 GCCCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGAA-CAGCAAAAAGTTTTCAAAAATCGT
*
507398 GAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
709 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
507463 AATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGGTGTGCCTGAACCCACCTAC
774 AATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * **
507528 CACCCTATTGATCCACGACTTGCGCATCCCATCTTTCTGGATGGCGTAGTGCCCGCCCGCCC
839 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCC
* * * **
507590 ACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATACCCAGTCTAAGATTGGAC
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * * * * **
507655 TGAACTGAGGGTTGCTGTAGCAAGATCGACAGCATGCAGAGGGGGGACGCGGACGATCCCCGGCT
66 AG-ACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGA--GGAGACCCGGCCGATCCCTAGCT
* * * * *
507720 TACGCATCCCACCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCAT
128 TGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCAT
* * * * *
507785 ATGGAGTTCATTCCCTGTCTAAGCATAC-AGAGTTCATTCCCAATCTAAGATCGAACAGGAACAA
193 ACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACAGGACCAA
* * *
507849 GGGTTGCGGCAGCACATGC-TGGACTCGGGCATATGCTGGTGCTGCATTTTTCTCCATCGGGGCA
257 GGGTTGCGGCAGCACATGCTTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
* **
507913 CCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC--CGA-C---GATC---
321 CCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGTTTCGGCGATCGGGGGCCGGG
* * *
507969 AGAGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
508034 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
508099 AGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGA
516 AGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
508164 GTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGGAGGATCATGTCTACCAAGTTTGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
* * *
508229 CCCAAAACTACTTTCAAAAAAATTTAAAAAAATCCCGAACAGCAAAAAG-TTTCAAAAATCATGA
646 CCCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTCAAAAATCGTGA
508293 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGGACCATTGTATGA
711 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGA
*
508358 ATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACC
775 ATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
508423 AGCCTATCGATCCATGGCTTACGCGTCCCGTCTCTCTAGCCGGCGTAGTG--C-CCGCCC
840 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCC
*
508480 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-
* * * * * * *
508545 CAGACCAAGGGTTACGGTGGTAGGATCAACAGCACGTAGAGTGGGACTCGGCCGATCCC-CGACT
65 CAGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAG-GAGACCCGGCCGATCCCTAG-CT
* * * * *
508609 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGGCC-GCACGCTCATTTCGTGGGTTGACTTAAGCA
128 TGCGCATCCCGCCCCTCTAGCCGGCTGAGC-GCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCA
* * *
508673 TACGGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
192 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCAA
* * * * *
508738 GGGTTGGGGCAGCACATGCTGGGCTCGAGCATGTACTGGTGCAGCATTTTTCTTCATCGGGGCAC
257 GGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * * * ** *
508803 CGTCACCGAAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCAACGATCGGGTGCCGGG
322 CATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTTCGGCGATCGGGGGCCGGG
508868 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
508933 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
508998 AGCCATTAAAGTGTCTGAAATGGGGA-ATCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
516 AGCCATTAAAATGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
509062 AGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTG
* * * * **
509126 GGGCCAAAACT-CTTCCCGAAAAAATTTTAAAAAATCCTGAACCGTTAAAAGTTTTC-AAAATCG
644 GGCCCAAAACTACTT-TCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTCAAAAATCG
* * * **
509189 TGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACGTCACGTGAAGGCACAAGGGACCATTGTAT
708 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
509254 GAATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
773 GAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
509319 CCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGTCCGCCC
838 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCC
* * ** * * *
509382 GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCGTATGGTGTTCATTCCTAATCTAAGATCAGAT
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-
* * * * ** *
509447 CAGAGCAAGGGTTATGATAGCAGGATGGGTAGCACGCAGAGGCAGACCCGGCCGATCCCTAGCTG
65 CAGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGG-AGACCCGGCCGATCCCTAGCTT
** * * * *
509512 GCGCATCCCGCCATTCTGGCCAGCTGAGCGCCTGCATGCTCGTTTCGTTGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATA
* * * * * *
509577 CGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTGCCAGTCTAAGATTGTATC-GGATCGAG
194 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCAAG
* * * * *
509641 GGTTGCGACAGCACGTGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTTGGGGCACC
258 GGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* *
509706 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTCGGGTTTCGGCGATCGGGGGGCC-GG
323 ATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGTTTCGGCGATC-GGGGGCCGGG
* *
509770 GGGGTGTGTGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
509835 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
509900 AGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
516 AGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
509965 GTTTTTGGCTGAA-TTTTTTGTGCATGCCAACAAAAATACGAGGATCATGTCTACCAAGTTTGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
*
510029 CCCAAAACTACTTT-GAAAAAAATTTTAAAAAATCCCGAACAGCAAAATG-TTTCAAAAATCGTG
646 CCCAAAACTACTTTCG-AAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTCAAAAATCGTG
*
510092 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGA
710 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
510157 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACC
775 ATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
510222 ACCCTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
840 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
510270 CGGCTGCCGC
Statistics
Matches: 2351, Mismatches: 273, Indels: 102
0.86 0.10 0.04
Matches are distributed among these distances:
888 2 0.00
889 216 0.09
890 103 0.04
891 182 0.08
892 313 0.13
893 130 0.06
894 114 0.05
895 3 0.00
896 1 0.00
898 127 0.05
899 332 0.14
900 13 0.01
901 261 0.11
902 527 0.22
903 27 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
AGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGAGACCCGGCCGATCCCTAGCTTGC
GCATCCCGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGT
TGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
ACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGTTTCGGCGATCGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAA
AACTACTTTCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCC
Found at i:510356 original size:26 final size:26
Alignment explanation
Indices: 510326--510378 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
510316 GTTGACTTAG
510326 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
510352 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
510378 G
1 G
510379 TTTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:510641 original size:754 final size:750
Alignment explanation
Indices: 509528--511007 Score: 2243
Period size: 754 Copynumber: 2.0 Consensus size: 750
509518 CCCGCCATTC
* * * * * * *
509528 TGGCCAGCTGAGCGCCTGCATGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAG
1 TGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
* * * * * *
509593 CCTAAGCATACGAAGTTCATTGCCAGTCTAAGATTGTATCGGATCGAGGGTTGCGACAGCACGTG
66 CCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCCGAACGAAGGTTGCGACAGCACATG
* * *
509658 CTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTC
131 CTTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
*** * * * * * * *
509723 GGAGAACCTGACCGGTGGCATTCGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGTGTACATGAT
196 GGAGAACCTGACCGACAGCATTCGGGTTCCGACAATCGGGGGCCCGAGGGGTGTGCGCACATGAT
* *
509788 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
261 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACT
* *
509853 CACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGA
326 CACACCCACTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGA
* * * *
509918 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTT-T
391 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTCGACTTTTTAGCTGAATTTAT
* * * *
509982 TTGTGCATGCCAACAAAAATACGAGGATCATGTCTACCAAGTTTGGGCCCAAAACTACTT-TGAA
456 TTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGCCCAAAACTACTTCCG-A
* * *
510046 AAAAATTTTAAAAAATCCCGAACAGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
520 AAAAATTTAAAAAAATCCC-AACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
510111 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAAT
584 TCTTGCCATGAAAC-TCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAAT
**
510176 GGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATGCACGGCT
647 GGCATTGGCACATAGAAATATGAAGATGTACCTAAA-CCACCTACCACCCTAT-GATGCACGGCT
**
510241 TGCGCATCCCGTCTCTCTGGCCGGCGTAGCGGCTGCCGCTT
710 TAAGCATCCCGTCTCTCTGGCCGGCGTAGCGGCTGCCGCTT
*
510282 TGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
1 TGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
* * * *
510347 TCTAAGCATACCG-AGTTCATTCCCAGTCTAAGTTTGGA-CCGAACGAAAGGTTGCGGCATCACA
66 CCTAAGCATA-CGAAGTTCATTCCCAGTCTAAGATTGGATCCGAACG-AAGGTTGCGACAGCACA
* *
510410 TGC-TGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCGTCG
129 TGCTTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* *
510474 TCGGAGAACCTGACCGACAGCATTGGGGTTCCGACAATCGGGGGCCCCGAGGGGTGTGCGCGCAT
194 TCGGAGAACCTGACCGACAGCATTCGGGTTCCGACAATCGGGGG-CCCGAGGGGTGTGCGCACAT
*
510539 GATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGA
258 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGA
* *
510604 ACTCACACCCACTT-AAGCAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
323 ACTCACACCCACTTAAAG-AGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGT
*
510668 CTGAAATGGGGACACTTTTTTCAAATGATTACAAAATCTTCTACACTTCGACTTTTTAGCTGAAT
387 CTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTCGACTTTTTAGCTGAAT
* *
510733 TTATTTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGGCCAAAACTCCTTC
452 TTATTTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGCCCAAAACTACTTC
* * *
510798 CGAAAAAATTTAAAAAAATCCCCACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
517 CGAAAAAATTTAAAAAAATCCCAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
510863 CGTCTTGCCATGAAACTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
582 CGTCTTGCCATGAAACTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
510928 GGCATTGGCACATAGAAATATGAAGATGTGCCTTAACCACCTACCACCCTATGATGCACGGCTTA
647 GGCATTGGCACATAGAAATATGAAGATGTACCTAAACCACCTACCACCCTATGATGCACGGCTTA
510993 AGCATCCCGTCTCTC
712 AGCATCCCGTCTCTC
511008 CGCCCGACGT
Statistics
Matches: 655, Mismatches: 65, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
750 26 0.04
751 16 0.02
752 64 0.10
753 118 0.18
754 353 0.54
755 77 0.12
756 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (750 bp):
TGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
CCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCCGAACGAAGGTTGCGACAGCACATG
CTTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
GGAGAACCTGACCGACAGCATTCGGGTTCCGACAATCGGGGGCCCGAGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACT
CACACCCACTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGA
AATGGGGACACTTTTTTCAAATGATCACAAAATCTTCTACACTTCGACTTTTTAGCTGAATTTAT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGCCCAAAACTACTTCCGAA
AAAATTTAAAAAAATCCCAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACATAGAAATATGAAGATGTACCTAAACCACCTACCACCCTATGATGCACGGCTTAAGCA
TCCCGTCTCTCTGGCCGGCGTAGCGGCTGCCGCTT
Found at i:511257 original size:26 final size:26
Alignment explanation
Indices: 511221--511324 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
511211 TTTACTTAGC
511221 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
511247 CATACAGAGTTCTTTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
511273 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
511299 CATA-TGAAGTTCATTCCCAGTCTAAG
1 CATACAG-AGTTCATTCCCAGTCTAAG
511325 ATCGAACCGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
25 1 0.01
26 73 0.99
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:513068 original size:877 final size:874
Alignment explanation
Indices: 511327--516001 Score: 5875
Period size: 877 Copynumber: 5.3 Consensus size: 874
511317 AGTCTAAGAT
* * * *
511327 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCACCTTGCCATAAAACTTCA
1 CGAACCGCAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
511392 CGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-A
*
511455 AATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
128 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
511520 -TAGGCCGACGTAAT----GCTCGCCTG--C-TCGTTTGTTTCGTCGCTTAGCTTAGGCATACGG
193 CT-GGCCGGCGTATTGCCCGCCCGCCCGCCCGTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * ** * *
511577 AGTTCA-TCCCAAGTCTAACATCAGATCC-GACTGAGGGATGCGGTAGCAGGATCACCAACACGT
257 AGTTCATTCCC-AGTCTAAGATCAGA-CCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGC
* * * ** * *
511640 AAAGGGGGACCCGATCGATCCTCAGCTTGCGCATCTTGCCCCTCTAGCCGGTTGAGCGCCCGCAC
320 AGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * ** * *
511705 GCTCGTTTCGTGGGTTGACCTTA-GCATACGAAGTTCATTTCTTGTCTAAGATCGGACCAGACCG
384 GCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCG
* * * * * * *
511769 AGGTTTATGGCAACACATACTGGGCTCGGGCATGAGCTGGTGCCGTATTTTTCTTC-TCCGGGGC
448 AGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGC
* * * * * * *
511833 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGTGTTCCGGCGATCGGGGGGAC
512 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGCC
*
511898 CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
577 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
511963 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGC
642 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
512028 CAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
707 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
512093 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAGAATACAAGGATCATGTCTACCTATTT
772 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
512158 TGGGTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
837 TGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAATCC
* * *
512197 CGAACCTCAAAAAGTTTCAAAATCCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCA
1 CGAACCGCAAAAAGTTTCAAAAT-CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
512262 CGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* * * *
512327 TATGAAGATATACCTAAACCCAGCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
130 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
512392 GGCCGACGTATTG-CCGCCCGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
195 GGCCGGCGTATTGCCCGCCCGCCCGCCCGT-CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * * *
512456 TTCATTCCTAGTCTAACATCAGATCAGACTGAGTGTTGCGGTAGCAGGATTGGCAGTAGGTAGAG
259 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAG
** ** * * * * *
512521 GGGGACTAGGTCGATACCCTGCTTGCGCATCCCGTCCCTCTGGCCGACTGAGCACCCGTACGCTC
324 GGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
512586 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
388 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
* * * *
512651 TGTGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTTGTCGGGGCACCATC
453 TGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
512716 GTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGCCCGGGGG
518 GTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGCCCGGGGG
* * * *
512781 TGTGTGCGCAGATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
583 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
512846 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAG
648 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
512911 CCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
713 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
512976 TTTTAGCTGAATTTTTTTGGTGCATGCCAACAAAAATACAGGGATCCCGTCTACCAAGTTTGGGG
778 TTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
513041 CCAAAACTCCTTCCAAAAAAATTTAAAAAAAATCT
842 CCAAAACTCCTTCCAAAAAAATTT--AAAAAATCC
* * * * *
513076 CGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTGA
1 CGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
513141 CGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* *
513206 TGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
130 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
513271 GGTCGGCGTACTGCCCGCCCGCCCGCCCGCCCGCTCACTCGTTTCGTCAGTTGGCTTAGGCATAC
195 GGCCGGCGTATTGCCCGCCCGCCCGCCCG-TCG-T---TCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * *
513336 GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGTGCTAGTAGGATCGGTAGCACCC
255 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGC
* * *
513401 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTC-TCCCTCTGGCCGGCTGAGCGCCCGGAC
320 AGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
513465 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG--C-ATA-CGGA--G
384 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCG
**** ** * * * ** * * * ** * **
513524 -TTCAT-TCCCAGC-CTAAGATTGGAC-CAGACCGA-G-GGTTGTGGCAGCA-CATGCTAGGCTC
448 AGGGTTGTAGCAGCAC-ATG-CTGGGCTC-GGGC-ATGTGCTGGT-GCCGCATTTTTCTTCG-TC
* * * *
513582 -GGGCACCATCGTCGGGGCATCGCCGAAGAACCTGACC-GACGGTATTGGGGTTTCGACGATCGA
507 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGA
* * * * *
513645 GGGGGCCGGCGGGGGTGTACGCACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAATGGC
571 GGGGCCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
513710 CCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAAGT
635 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
513775 TTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
700 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
513840 GTACACTTCAAGTTTTTAGCTGAATTTTTTTGGTGCATGCCAACAAAAATACAGGGATCCCGTCT
765 GTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
513905 ACAAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTAAAAAAAATCT
829 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT--AAAAAATCC
* * * *
513953 CGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCA
1 CGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
514018 CGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* *
514083 TATGAATATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
130 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * * * *
514148 GGCCGGTATAGTGCCCACCCGTCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAG
195 GGCCGGCGTATTGCCCGCCCGCCCGCCCGTC-GTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
514213 TTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGTGGCAGTAGGATCGGCAGCATGCAGA
259 TTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGA
* * * * *
514277 GGTGGACCCGACCAATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCGCCCGCACACT
323 GGGGGACCCGACCGA-TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
514342 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCC
387 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T-A--AG---------
* * *
514407 AGTCTAAGAACGGATAGGACCGAGGGTTGCAGCAGCCCATGCTGGGCTCGGGCATGTGCTGGTGC
434 A-TC---GAAC----CGGACCGAGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
514472 CGCATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTA
491 CGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTG
* * *
514536 GGGTTCCGGCGATCGAGGTGGCCAGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
555 GGGTTCCGACGATCGAGG-GGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
514601 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCAT
619 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
514666 TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAA
684 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
514731 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGT
749 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
514796 ACAAGGATCATGTCTACCAATTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
814 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAAAATCC
* * *
514858 CAAACCGCAAAAATTTTCAATAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
1 CGAACCGCAAAAAGTTTCAA-AATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
514923 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCA--CATAGA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-A
*
514985 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
128 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
515050 CTGGCCGGCATAGTGCCCGCCCTCCCGCCCG-C--TCGTTTTGTCGGTCGGCTTAGGCATACAGA
193 CTGGCCGGCGTATTGCCCGCCCGCCCGCCCGTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * *
515112 GTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGGTAGCACACAGA
258 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGA
* * * * * *
515177 TGGGGACCCGACCGATCCCTAGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGACCGCACGCT
323 GGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * * *
515242 CATTTCATGGGTTAACTTAGGCATACGGAGTTTATTCCCTGTCTAAGATCGGACCAGATCGAGGG
387 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGG
* * *
515307 TTGCAGCAGCACATGCTGGGGTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGTCACCAT
452 TTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * *
515371 CGCCGGACCATC-CTCGGAGAACCTGATCGGCGGCATTGGGGTTTCGACGATCG-GGGCGGCCGG
517 CGTCGGAGCATCGC-CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGG-GCCCGG
515434 TGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
580 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
515499 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
644 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
515564 GTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
709 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
515629 GAGTTTTTAGCTGAATTTTTATGTGCATGCAAAGAAAAATATAAGGATCACATCTACCAAGTTTG
774 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
515694 GGGCCAAAACACCTTGCGAAAAAATTTTAAAACATCC
839 GGGCCAAAACTCCTT-CCAAAAAAATTTAAAAAATCC
* * *
515731 CGAACCGTAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGAATCATCTTGCCATGAAACTTCA
1 CGAACCGCAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* * * * * *
515796 TGTGAAGGCTTGAGGGAACATTGTATGAGTTTACAAGCCATAAAAAAGGCATTGGCACGCAAAAA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
*
515861 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT
130 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
515926 GGCCGGCGTA--G--TGCCCGCCCG--C-TCGCTCATTTCGTCAGTTGGCTTAGGTATACGGAGT
195 GGCCGGCGTATTGCCCGCCCGCCCGCCCGTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
515984 TCATTCCCAGTCTAAGAT
260 TCATTCCCAGTCTAAGAT
516002 TGGACCGGAC
Statistics
Matches: 3340, Mismatches: 365, Indels: 200
0.86 0.09 0.05
Matches are distributed among these distances:
868 2 0.00
869 8 0.00
870 230 0.07
871 3 0.00
872 10 0.00
873 561 0.17
874 195 0.06
875 3 0.00
876 91 0.03
877 1012 0.30
878 62 0.02
879 191 0.06
880 28 0.01
881 6 0.00
882 1 0.00
883 74 0.02
884 105 0.03
891 2 0.00
893 1 0.00
894 1 0.00
895 2 0.00
898 2 0.00
899 6 0.00
900 168 0.05
902 2 0.00
903 4 0.00
904 107 0.03
905 106 0.03
906 71 0.02
907 279 0.08
908 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CGAACCGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTATTGCCCGCCCGCCCGCCCGTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGT
AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
GGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGCCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCAAAAAAATTTAAAAAATCC
Found at i:513524 original size:26 final size:26
Alignment explanation
Indices: 513488--513540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
513478 GTTGACTTAG
* *
513488 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
513514 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
513540 G
1 G
513541 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:514398 original size:26 final size:26
Alignment explanation
Indices: 514362--514414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
514352 GTTGACTTAG
*
514362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
514388 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
514414 G
1 G
514415 AACGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:516978 original size:26 final size:26
Alignment explanation
Indices: 516949--517027 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
516939 GTTGACTTAG
*
516949 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
516975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
517001 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
517027 G
1 G
517028 ATCGAATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:517903 original size:26 final size:26
Alignment explanation
Indices: 517873--517923 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
517863 TGACTTAGGT
517873 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
517899 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
517924 ATTGGATAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:518328 original size:898 final size:894
Alignment explanation
Indices: 516083--520474 Score: 5293
Period size: 927 Copynumber: 4.8 Consensus size: 894
516073 GCTGACATAG
** **
516083 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGATCGAGGGTTACGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGGATCGAGGGTTACGGCAGCACATGCTGG
* * *
516147 ACTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCAT---C--GC--CG--GAGAA
66 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGCTGAGAA
* * * *
516203 CCTGACCGGCGGTATTGGGCTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
130 CCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* *
516268 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
516333 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
516398 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATG
323 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTATG
*
516463 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** *
516528 TTTAAAAAATCCCAAACCGTAAAATGTTTGGAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
516593 CATGAAACTACACGTGAAGGCTTAAGGGACCATTTTATGAATTTACATGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
516658 GCCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTA
582 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
* ** * *
516723 TCCCATCTCTCTGGCCGGTATAGTGCCCGCCCGC-CTGCCCACCTACTTGTTTCGTCGGTTGGCT
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC-GCCC-GCT-C--GTTTCATCGGTTGGCT
* ** ** * * *
516787 TAGGCATACGGAGTTCATACCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATTG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTACGGCAGCAGGATCG
* * * * * * * *
516852 GCAGCACATAGAGGGGGACCCGATCAATCTCCGGGTTGCGCATCCCGCCCCTTTGGCCGGTTGAG
772 ACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** * *
516917 CGCCCGCATGCTCGTTTTGTGCGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
837 CGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
516975 GCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A-T-T-AG---G-AT----C
* ** * *
517040 TGAGGGTTGCTACAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGG
42 -GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGG
* * * *
517105 CACCATCGTCGAAACATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-
105 CACCATCGCCG-AGCATCGCT-GAGAACCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * **
517169 TGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATC
167 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
517234 TCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
232 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
517299 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGCCAGAAAATCTTGTACACTT
297 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
517364 CGAGTTTTTAGCTGACTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
362 CGAGTTTTTAGCTGA-ATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
517429 GGGGCCAAAACTCCTTCCGAAAAAAATTTAGAAAATCCCAAACCGCAAAAAGTTTGGAAAATCAT
426 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATCAT
* * * *
517494 GAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTTCATGTGAAGGCTTAAGGGAACATTGTATG
491 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
517559 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAAC
556 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
517624 CACCCTATCAATCCATGGCCTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGCC
621 CACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCC
* *
517689 CGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTCAGATCAGACCAAA-TC
686 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-
* * * * * * *
517752 GAGGGTTACGGCGGCAAGATCGATAGCACACAGAGGGGGACCTGACCGATCCTCGGCTTGCACAT
750 AAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * *
517817 CCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGATCGTTTCATGGGTTGACTTAGGTATACGGAGT
815 CCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
517882 TCATTCCCAGTCTAA
880 TCATTCCCAGTCTAA
* * * *
517897 GGATACGGAGTTCATTCCCAGTCTAAGATTGGA-TAGGATCGAGGGTCACGGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGGATCGAGGGTTACGGCAGCACATGCTGG
* * * *
517961 GCTCGGCCATGTGCTGGTGTCGCATTTTTCTAC-CCTGGGGCACCATCGCCAGAGCATTGCTGCA
66 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTC-GGGGCACCATCGCC-GAGCATCGCTG-A
* * * *
518025 GAACCTGACTGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTACGTACATGATAT
127 GAACCTGAC-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
518090 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCG
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
518155 CACTTCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
518220 TGGTGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACCTTTTTT
320 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT
* *
518285 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
384 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
518350 AAATTTAAAAAATCTCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTTGTCT
449 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
518415 TGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACGTTGTATGAATTTACAAGCCATAACATTGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * ** * *
518480 TTTGGCACGCAGAAATATAAACATGTGCCTAAACCCACCAACCACCCTATCAATCCACAACCTAC
579 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
* * *
518545 GCATCCCGTCTCTCTGGCCGGCGAAAAGCCCGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGG
644 GCATCCCGTCTCTCTGGCCGGCG--TAG--TGCCCGCCCGCTCG--C-C-CGCTCGTTTCATCGG
* * * * *
518610 TTGGCTTAGACATACGGAGTTCATTCCCAGTCTCAGATCAGATCGAA-TCAAGGGTTACGGTAGC
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-AAGGGTTACGGCAGC
* * *
518674 AGGATCGACAGGACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
765 AGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
518739 GGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCGTT-CCAGTCTAA
830 GGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
** * *
518803 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGGATCGAGGGTTACGGCAGCACATGCTGG
*
518867 GCTCGGGCATGTGCTGGTGC-CACCTTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGA
66 GCTCGGGCATGTGCTGGTGCGCA--TTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGCT-GA
* *
518931 GAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGTGCCGGGCGGGTGTGCGCACATGATGT
127 GAACCTGACGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGT
**
518996 GCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
519061 CACTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
519126 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTT-
320 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTA
* *
519189 TGTCCATTCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAA
385 TG--CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAA
* ** *
519253 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGCAAACGAGTCGT
447 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGT
* **
519318 CTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
519383 GCATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGGCTT
577 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
* ** * * *
519448 GCGCATCCTGTCTCTCTGGCCGAAGTAGTGCCCGCGCGCCTGTCCGCCTGCTCATTTCATCGGTT
642 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--T-CGCCCGCTCGTTTCATCGGTT
* * ** * * * *
519513 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGATCAGACTAAGGGTTGCGGCAGTAGG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTACGGCAGCAGG
** * * * *
519578 ATCAGTA-A-CATGCGGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCCACCCCTCTAGCCG
768 ATC-G-ACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
519641 GCTGAGCGCCTGCACGCTC--ATCGTGGGTT-ACCTTAGGCA-ACGGAGTTCATTCTCCA-TCTA
831 GCTGAGCGCCTGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGAAGTTCATTC-CCAGTCTA
519701 A
894 A
* *
519702 GCATACAGAGTTCATTCCACAGTCTAAGCAAACGGAAGTTCATTCAGTTCTAAGATCGGACCAGA
1 GCATACGGAGTTCATTCC-CAGTCTAAG--ATC-G--G---ATT-AG------GATC-G---AG-
* * * * * *
519767 CAGGTTGCGGCAGCACATGCTGGGCTCCGGGCATGTGCTTGTGCCCGTATTTTCTTCGTCGAGGA
45 --GGTTACGGCAGCACATGCTGGGCT-CGGGCATGTGCTGGTGCGCAT-TTTTCTTCGTCGGGGC
* * *
519832 ACCATCGCCAGAG-AAC-CTGA-AA---G--G-CGGCATTGGGGTTCCGAAGATTGGGGGGGCCG
106 ACCATCGCC-GAGCATCGCTGAGAACCTGACGACGGCATTGGGGTTCCGACGA-TCGGGGGGCC-
519888 GGGGGGTGTGCGCACATGAAT-TGCGATGGGTGCTGGTTACTTGGCCCTTATATTGGCCCCCCTA
168 GGGGGGTGTGCGCACATG-ATGTGCGATGGGTGCTGG-TACTTGGCCCTTATATTGG-CCCCCTA
* * * * *
519952 TCCCTCATCAAAACCTCGAGAACTTACACCCTCTTAAAGGAGCACTTAATATTTTACCAGGTTTG
230 TCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAA-GAGCATTTGAGATTTTA-CAGGTTTG
*
520017 TTTGCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTG
292 -CTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
520082 TGCACATCGAGTTTTTCGCTGAATATTTTTATGGATGCGAA-AAAAATACAAGGATCACGTCTAC
355 TACACTTCGAGTTTTTAGCTGAAT-TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
520146 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGA
419 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGA
*
520211 AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
484 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
520276 TTGTATGAATTTACAACCCATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAAACC
549 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * *
520341 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGC
614 CACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CG-
* ** * * **
520406 ACCCACTCGCTTGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGATC
676 -CCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
520471 AGAC
740 AGAC
520475 TGGAGTGAAG
Statistics
Matches: 3056, Mismatches: 322, Indels: 215
0.85 0.09 0.06
Matches are distributed among these distances:
892 27 0.01
893 2 0.00
894 1 0.00
895 3 0.00
896 99 0.03
897 9 0.00
898 475 0.16
899 38 0.01
900 14 0.00
901 145 0.05
902 20 0.01
903 7 0.00
904 10 0.00
905 313 0.10
906 306 0.10
907 160 0.05
908 1 0.00
909 3 0.00
912 1 0.00
913 21 0.01
914 38 0.01
915 22 0.01
916 19 0.01
917 28 0.01
918 75 0.02
919 7 0.00
920 8 0.00
921 342 0.11
922 240 0.08
923 52 0.02
924 45 0.01
925 4 0.00
926 3 0.00
927 476 0.16
928 3 0.00
929 39 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGGATCGAGGGTTACGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGCTGAGAAC
CTGACGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCAAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTACGGCAGCAGGATCGACAGCACAC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:518814 original size:25 final size:26
Alignment explanation
Indices: 518778--518829 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
518768 GTTGACTTAG
*
518778 GCATACGAAGTTCGTT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
518803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
518829 G
1 G
518830 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:519712 original size:26 final size:27
Alignment explanation
Indices: 519683--519746 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
519673 TTAGGCAACG
*
519683 GAGTTCATTCTC-CA-TCTAAGCATACA
1 GAGTTCATTC-CACAGTCTAAGCAAACA
*
519709 GAGTTCATTCCACAGTCTAAGCAAACG
1 GAGTTCATTCCACAGTCTAAGCAAACA
519736 GAAGTTCATTC
1 G-AGTTCATTC
519747 AGTTCTAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.03
26 12 0.36
27 11 0.33
28 9 0.27
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (27 bp):
GAGTTCATTCCACAGTCTAAGCAAACA
Found at i:520219 original size:921 final size:920
Alignment explanation
Indices: 518795--520469 Score: 2500
Period size: 921 Copynumber: 1.8 Consensus size: 920
518785 AAGTTCGTTC
*
518795 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC
1 CAGTCTAAGCAAACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC
* * * *
518860 ATGCTGGGCTCGGGCATGTGCTGGTGCCACCTTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
65 ATGCTGGGCTCGGGCATGTGCTGGTGCCACCTTTTTCTTCGTCGAGGAACCATCACCAGAGCAAC
* *
518925 GCTGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGTGCCGGGCGGGTGTGCGCACA
130 GCTGGAGAA-C-G---AGCGGCATTGGGGTTCCGAAGATCGGGGGGCCGGGCGGGTGTGCGCACA
518990 TGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
190 TGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
519055 AACTCACACTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGT
255 AACTCACACCTCCTTAAAGAGCACTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
519120 CTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATT
320 CTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCCAAATA
* *
519185 TTTTTGTCCATTCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTTCC
385 TTTTTATCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTTCC
* *
519250 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGCAAACGAGT
450 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
519315 CGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAA
515 CGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACACATAAAA
* *
519380 ATGGCATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGG
580 ATGACATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
* **
519445 CTTGCGCATCCTGTCTCTCTGGCCGAAGTAGTGCCCGCGC-GCCTGTCCGCCTGCTCATTTCATC
645 CTTGCGCATCCTGTCTCTCTGGCCGAAGTAGTGCCCGCGCACCCACT-CGCCTGCTCATTTCATC
** *
519509 GGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGATCAGACTAAGGGTTGCGGCAG
709 GGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGATTGGATCAGACTAAGGGTTGCGGCAG
519574 TAGGATCAGTAACATGCGGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCCACCCCTCTAGC
774 TAGGATCAGTAACATGCGGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCCACCCCTCTAGC
519639 CGGCTGAGCGCCTGCACGCTCATCGTGGGTTACCTTAGGCAACGGAGTTCATTCTCCATCTAAGC
839 CGGCTGAGCGCCTGCACGCTCATCGTGGGTTACCTTAGGCAACGGAGTTCATTCTCCATCTAAGC
519704 ATACAGAGTTCATTCCA
904 ATACAGAGTTCATTCCA
519721 CAGTCTAAGCAAACGGAAGTTCATT-CAGTTCTAAGATCGGACCAGA-C-A-GGTTGCGGCAGCA
1 CAGTCTAAGCAAACGG-AGTTCATTCCAG-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * *
519782 CATGCTGGGCTCCGGGCATGTGCTTGTGCC-CGTATTTTCTTCGTCGAGGAACCATCGCCAGAG-
64 CATGCTGGGCT-CGGGCATGTGCTGGTGCCACCT-TTTTCTTCGTCGAGGAACCATCACCAGAGC
* *
519845 AAC-CT-GA-AA-G-GCGGCATTGGGGTTCCGAAGATTGGGGGGGCCGGGGGGGTGTGCGCACAT
127 AACGCTGGAGAACGAGCGGCATTGGGGTTCCGAAGA-TCGGGGGGCCGGGCGGGTGTGCGCACAT
**
519905 GAAT-TGCGATGGGTGCTGGTTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAAACCTC
191 G-ATGTGCGATGGGTGCTGG-TACTTCACCCTTATATTGG-CCCCCTATCCCTCATC-AAACCTC
* * *
519969 GAGAACTTACACC-CTCTTAAAGGAGCACTTAATATTTTACCAGGTTTGTTTGCCCAGTAGCCAT
252 GAGAACTCACACCTC-CTTAAA-GAGCACTTAAGATTTTA-CAGGTTTG-CTG-CCAGTAGCCAT
* *
520033 TAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACATCGAGTTTTT
312 TAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTT
* ** ** * *
520098 CGCTGAATATTTTTATGGATGCGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
376 AGCCAAATATTTTTATCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
* **
520162 ACT-CCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCATGAAAAATA
441 A-TGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
520226 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
505 GAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
520291 ACCCATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
570 ACACATAAAAATGACATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ** *
520356 CGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCACCCACTCGCTTGCT
635 CAATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGAAGTAGTGCCCGCGCACCCACTCGCCTGCT
520421 CATTTCATCGGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGAT
700 CATTTCATCGGTTGGCTTAGGCATATGGAGTAAATTCCCAGTCTAAGAT
520470 CAGACTGGAG
Statistics
Matches: 673, Mismatches: 59, Indels: 39
0.87 0.08 0.05
Matches are distributed among these distances:
913 20 0.03
914 41 0.06
915 19 0.03
916 17 0.03
917 25 0.04
918 14 0.02
919 7 0.01
920 4 0.01
921 343 0.51
922 68 0.10
923 28 0.04
924 43 0.06
925 4 0.01
926 32 0.05
927 8 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (920 bp):
CAGTCTAAGCAAACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCACCTTTTTCTTCGTCGAGGAACCATCACCAGAGCAACG
CTGGAGAACGAGCGGCATTGGGGTTCCGAAGATCGGGGGGCCGGGCGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCTCCTTAAAGAGCACTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCCAAATATTTTTA
TCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAA
ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACACATAAAAATGACA
TTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
CATCCTGTCTCTCTGGCCGAAGTAGTGCCCGCGCACCCACTCGCCTGCTCATTTCATCGGTTGGC
TTAGGCATATGGAGTAAATTCCCAGTCTAAGATTGGATCAGACTAAGGGTTGCGGCAGTAGGATC
AGTAACATGCGGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCCACCCCTCTAGCCGGCTGA
GCGCCTGCACGCTCATCGTGGGTTACCTTAGGCAACGGAGTTCATTCTCCATCTAAGCATACAGA
GTTCATTCCA
Found at i:523922 original size:26 final size:26
Alignment explanation
Indices: 523882--523934 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
523872 GTTGACTTAG
523882 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCTAGTCTAA
523908 GCATACGGAGC-TCATTCCTAGTCTAA
1 GCATACGGA-CTTCATTCCTAGTCTAA
523934 G
1 G
523935 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCTAGTCTAA
Found at i:526262 original size:26 final size:26
Alignment explanation
Indices: 526210--526269 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
526200 GTTGACTTAG
* *
526210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGATTTCATTCCCAATCTAA
*
526236 GCATACGGATTTCATTCCCAATGTAA
1 GCATACGGATTTCATTCCCAATCTAA
526262 G-AT-CGGAT
1 GCATACGGAT
526270 CGGGCCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAATCTAA
Found at i:527164 original size:26 final size:26
Alignment explanation
Indices: 527116--527166 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
527106 GTTGACTTAG
*
527116 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
527142 GCATACGGAGTTCGTTCCCAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
527167 TGATCGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:528053 original size:26 final size:26
Alignment explanation
Indices: 528017--528068 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
528007 TTGACTTAGA
528017 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
528043 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
528069 ATCAGAACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:528956 original size:26 final size:26
Alignment explanation
Indices: 528920--528972 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
528910 GTTGACTTAG
528920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
528946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
528972 G
1 G
528973 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:529213 original size:904 final size:905
Alignment explanation
Indices: 524272--535502 Score: 9869
Period size: 906 Copynumber: 12.5 Consensus size: 905
524262 CTTTTTTCAA
** * * * * *
524272 ACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGATTGCGGCAGTAGGATCGACAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * * * *
524337 GCAGAGTGGTACCCGACCAATCCCCGGCCTGTGCATCCCGCCCCTCTGGTCGACTGAACGCCTCG
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCC-CG
** * *
524402 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATACTCTTAGCATACGGAGTTC
129 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** *
524467 ATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTGCGGTAGCACATGCTTGGCTCGGGCATGTGC
194 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * **
524532 TGGTGCCGCATTTTTCTCCG-TCGGGGCACCA---TC---G--TCG---GAGAACCTGACTGGTG
259 TGGTGCCGCATTTTTCTTCGCT-GTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACG
* * * *
524585 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACGCATGATGTGCAATGGGTGCTAG
323 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
524650 TACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAACCCTTGAGAACTCACACCCCCTTAAAGA
387 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
524715 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTT
452 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
524780 TCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTTTGTATGCCAACAA
517 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
524845 AAATACAATGATCTCGTCTACCAAGTTT-GGGCTCAAAACT-CTTTCGAAAAAATTTTAAAAAAT
582 AAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * * ** *
524908 CTTGAAACACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTT
646 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
524973 CACGTGAAGGCTTAA-GGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
711 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
525037 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
776 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * ** * *
525102 CTAGCCGGCGTAGTGAACGCCTGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
841 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** ***
525167 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAAAAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
** ** * * * * *
525232 ATAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGTGGCCAC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
525297 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C-G-G---A
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * *
525355 ----C---C--AGA-CTGA---G---G-GTTTTG-G-CAGCACATGCTGGGCTTGGGCACGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * * * *
525401 GGTGCCACCTTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGT
260 GGTGCCGCATTTTTCTTCGCTGTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACGGC
* * * *
525466 ATTGGGGTTCCGGCGACCGAGGGGCCGGGAGGTGTGTGCGCAAATGATGTGCGATGGGTGCTGGT
325 ATTGGGGTTCCGACGATCGGGGGGCCGGG-GG-GTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
525531 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAG
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
525596 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
525661 CAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGTTGAAATTTTTTGTGCATGCCAACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * *
525726 AATAAAAGGATCATGCCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAAATTTAAAAAAATC
583 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAAATTTTAAAAAATC
* * * ** * *
525791 CCGAAACGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCCTCTTGCCATTAAAACTT
647 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTT
*
525856 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
711 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
525921 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
776 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * * *
525986 CTAGCCGGCGTAGTGCATGCCCACCCGTCCGCCCGCCAGCCTGCTCGTTCCGTCGGTTGCCTTAT
841 CTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
526051 GCAT
902 GCAT
* * * ** * *
526055 ACAGAGTTCATTCTCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGGCAGTAGGATCGATAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCA
* ** * *
526119 CACAGAGCTGGACCCGGTCGATCCCCGGCTT-CTGCATGCCGCCCCTCTGGCCGGCTGAGAGCCC
65 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC-GCAT-CCGCCCCTCTGGCCGGCTGAGCGCCC
* *
526183 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTT
128 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
526248 CATTCCCAATGTAAGATCGGATCGGGCCGAGGGTTGCTG-CAGCACATGCTGGGCTCAGGCATGT
193 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGT
* * * * * * *
526312 GCTGGTGCTGCATTTTTC-TCTGCCGAGGCACCATCGTCAGAGCATCGTCGGAGAACCTGATCGG
257 GCTGGTGCCGCATTTTTCTTC-GCTGTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGA
* * *
526376 CGGCATTCGGGTT-CGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
321 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
526440 TGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAA
385 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
526505 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATT
450 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
526570 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAG
515 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
526635 AAAAATACAAGGATCATGTCTGCCAAGTTTGGGCCCAAAACTCCTTTCGAAGAAATTTTAAAAAA
580 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * *
526700 TCTGGAACCGCAAAAAATTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
645 TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * ** *
526765 TCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGTAATTGGCATGCAG
710 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * *
526830 AAATATGAAAATGTGCGTAAACCCACCTATCACCCTATCGATCCACGACTTGCGCATCTCGTCTC
775 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * ** * * * * *
526895 TCTGGCCGACGTAGTGCCTGCCTGTGCGCCCACCCGCCCGCTTGTTCCGTCAGTTGGCTTAGGCA
840 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
526960 T
905 T
* * * * ** *
526961 ACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGTTTATGGCAGCAGGATCGACAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * *
527026 GCAGAGGGGGACACGACCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCAGCTGAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** *
527091 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCG
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * * ** *
527156 TTCCCAGTCTATGATCGAATCGAAACGAAGGTTGCGACAGCACATGCTCGGCTCTAGCAGGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
** * * * **
527221 GGTGCTACATTTTTCTCCGCTGGGGCACCA---TC---G--TCG---GAGAACCTGATCGGTGGC
260 GGTGCCGCATTTTTCTTCGCTGTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACGGC
* * *
527275 ATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGT
325 ATTGGGGTTCCGACGA-TCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
527340 ACTTGGCCCTTATATTGGCCCCATATCCCTCATCAATCCTCGAGAACTCACACCCCTTTAAAGAG
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
527405 CATTTTAGATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGTGTAAAATGGGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
527469 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
527534 AATACAAGGATCACGT-TCACCAAGTTTGGGCCCAAAACT-CTT-TGAAAAAAATTTTAAAAAAT
583 AATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAAT
** ** * *
527596 CCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTT
646 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
527661 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGA
711 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
527726 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCACGTCCCGTCTCT
776 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
527791 CTGGCCGACGTAGTGCCCGACTGCCAGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
841 CTGGCCGACGTAGTGCCCG-C--CC-G-CCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
527856 GGCAT
901 GGCAT
* * * ** ** * *
527861 ACGGAGTTCATTCCCACTCTAAGATCAGACCAAACCAAGGGTTGCGAAAGCAAGATCGACAGCTC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * *
527926 ACAGAGGGGGACCTGGGCGATCCCCGACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGC
*
527991 ACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * **
528056 TTCCCAGTCTAAGATCAGAACAGACTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * ** *
528121 GGTGCTGCATTTTTCTTCG-TCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGG
260 GGTGCCGCATTTTTCTTCGCT-GTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACGG
* * *
528185 CCTTAGGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGT
324 CATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
528249 ACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAT
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
528314 CATTTGAGATTTTACTGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATCGGGACACTTTTCT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
528379 CAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAAATATTTTGAGCATGCCAACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
528443 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
583 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
528508 CAAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
648 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
528572 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCGATACAAATGGCATTGGCACGTAGAAA
713 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
528637 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
778 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
528702 GGCCGACATAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCATTTCATCGGTTGGCGTAGGCAT
843 GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
528765 ACGGAGTTCAATCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * *
528830 GCAAAGGGGCACCCGGTCGATCCTCGGCTTTCCCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGC
*
528895 GCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** *
528960 TTCCCAGTCTAAGATCGGACCGGACCGGGGGTCACGACAGCACATGTTGGGCTCGGGCATGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* **** *
529025 GGTGCCGTATTTTTCTTCGCTGTGGCGTTGTCGTCGGAGCATCTTCCGAGAACCTGACCGACGGC
260 GGTGCCGCATTTTTCTTCGCTGTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACGGC
*
529090 ATTGGGGTTCCGACGATCGGGGCGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
325 ATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
529155 CTAGGCCCTTATACTGGCCCCCTATCCCTCA-CAAACCTTGAGAACTCACACCCCCTTAAAGAGC
389 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
529219 ATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
454 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
529284 AAATGATCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTTTTGCATGCCAGCAAAA
519 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
529349 ATACAAGGAGCACGTCTAACAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAA-CCA
584 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-
** * *
529413 TAAACCGAAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
648 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
529478 CGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGACATTGGCACACAAAAA
713 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
529543 TATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGTGCATCCCGTCTCTTT
778 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
529608 GGCCGGCGTGGTGCCCGCCCGCCCG--C-CC-GCCCGATCGTTTCGTCGGTTGGCTTAGCCAT
843 GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
529667 ACGGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * *
529732 ACAGAGGGTGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
529797 ACGCTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTTCCAATCTAAGCGTACGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
529862 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
529927 GGTGCCACATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCG-CCGGAGAATCTGACCGGCG
260 GGTGCCGCATTTTTCTTCGCT-GTGGCACCATCGTCGGAGCATCGTCC-GAGAACCTGACCGACG
* * *
529990 GCATTGGGGTTCCGACGATCGGGGGAGCCAGGGGGTATGTGCACATGATGTGCGATGGGTGCTGG
323 GCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
** * *
530055 TACTTGGCTATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCGCACCCCCTTAAAGA
387 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
530120 GCGTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
452 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
530185 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
517 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
530250 AAATACAAGGATCACGTCCACCTACTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATC
582 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * *
530315 CAAAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTC
647 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
530380 ACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAGAA
712 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
530445 ATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTC
777 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
530510 TGGTCGATGTAGTGCCTGCCCGTCCGCCCGCCT----GCTCGTTTCGTCGGTTGGCTGAGGCATT
842 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA-T
* * * *
530571 ACGAAGTTCATTCCCATTCTAAGATCGGACCGGA-TCGAGGGTTGCAGGCAGCAGGATTGACAGC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGC-GGCAGCAGGATCGACAGC
* * * * * * *
530635 ATGGCA-ACGGGGGACCCGACTGATCCCCGGCTTGCCCGTCTTGCCCCTCTGGTCGGCTGAGCGC
64 A-CGCAGA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGC
* * ** **
530699 CCGCTCGGTCGTTTCGTGGGTTTGACTTAGGCATACCAAGTTCATTCCCAGTCTAAGCATATAGA
126 CCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * ** * ** ***** *
530764 GTTCATTGCCAGTCTAAGATCGAACCAGACAGATGGTT-AAAGCAGCACATGGT-AACAAAATCT
190 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCA
* ** * * * ** ** * * * **
530827 TGTAC-AAT-TCG-A-GTTT-TTAG--GT-G-A--ATTTTTTTGTGCAT-G-CCAACAAAAAT-A
254 TGTGCTGGTGCCGCATTTTTCTTCGCTGTGGCACCA-TCGTCGGAGCATCGTCCGA-GAACCTGA
* ** * * ** ***** * * * ** * *** **
530878 -C-AAGG-ATCAT-GTCTACC-AAG-T-TTGGGGCC-AAAACTCCTTC-CAAAAAAAGTTTAAAA
317 CCGACGGCAT--TGGGGTTCCGACGATCGGGGGGCCGGGGGGT-GTGCGCACATGATGTGCGATG
** * * * *** ** * * ***** **** * ** *
530934 AAT-CTCAAACTGTAATAAGTTTCAAAAATTATGAAAATTAGAAAATGAGTC-GTCCTGCCATGA
379 GGTGCT-----GGTACT-TGGCCCTTATATT-GGCCCCCTA-TCCCTCA-TCAAACCT-CGA-G-
*** * * * * * *** * *
530997 AACTTCACGTGA-AGGCTTAAGGGACCATTGTAAGAATTTACAAGACATATAAATGGCA-TCGGC
432 AAC-TCAC---ACCCCCTTAA-AGAGCATT-TGAGATTTTAC-AG--GT-TTGCTGCCAGT-AGC
* ** * * ***** ** ** *** * * *
531060 ACA-CAAA-AATATGAAGAT-GTG-C-CTAAACCCACCT-ACCACCCTATCGATCTATGACTT-G
486 -CATTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTA-CACTTCG
* * ** ******* ** ** ** **** ** * **
531118 CACATCCCTTCTCTCTGGCCGACGTTGTGCCCGCCTGCCCACCCGC-CCGCTCATTTCGT--C--
547 -A-GT---TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAA
* ** * * *** * * ** * *** * **
531178 GGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACTGAGGGTTA-CGGT
606 GTTTGG----GGCCA-A---AACTCCTTCCGA-AAAAATTTTA-A--AAAAT-CCCG-AACCGCA
** ** * * * * * * *** * ** * **
531241 AGCAGAATCG-ACAGCATGCAGAGGGGGACCCG-GTCGATCTTCGGCTTGTGCATCCCACCCCTC
657 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG-TCTT--GC-----CAT--GA-AACT-
* * ** * * ** * * * *** *
531304 TTACCGGTTG-AGCACCCACA-CG-CTCATT-TCGTGGGTTGACTTAGGCATACGGA-GTTCA-T
710 TCA-C-G-TGAAG-GCTTA-AGGGAC-CATTGT-ATGAATTTAC-AAGCCATAAAAATG-GCATT
** * * * ** * * ** * ** * *
531363 CCCTA-GTCTA-AGCATACG--GA-GT-TC-ATTCCTAGTCTAAGATCAGACCGGA-CCGA-GGG
766 GGC-ACG-C-AGA-AATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATC-GATCC-ACGGC
* * * * * * ** * **** **
531419 TTGCGACAGCACAT-GCT-AGGCTCGA-GCATGTGCTGGTGCCGTATTTTCCTTCGTCGGGGCAC
824 TTGCG-CATCCCGTCTCTCTGGC-CGACGTA-GTGCCCG-CCCG--CCCGCC--CG-C-CTGC-C
* ** * * ** * *
531481 C-ATCG--TCGGAGCATTGCCGGAGAACCT
878 CGCTCGTTTCGTCG-GTTGGCTTAG-GCAT
* * * *** * ** * * *
531508 AACTAGCGGT-ATT-GGGGTTCTGACGATCAGG--GGGGCTGGGGGGTGTGC-GCA-CATGAT-G
1 -AC-GGAGTTCATTCCCAG-TCT-AAGATC-GGACCAGACT-GAGGGT-TGCGGCAGCAGGATCG
* * * * * ** * *** * * * * * * *
531566 TAC-G-ATG-GGTGCTGGTACTTGGCCCTTAT-ATTGGC--CCCCTATCC-CTCATCAGACC-TC
59 -ACAGCACGCAGAG-GGGGACCCGG-CC-GATCCCCGGCTTGCGC-ATCCGCCCCTCTGGCCGGC
** * * * * ** * ** * * * *** *
531623 -GAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATT----TTACAG-GTTTGCTGCCAGT-T--
119 TGAGCGCCCGCACGCTCGTT-TCGTG-GGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *** ******* * *
531678 GCCATTA--AAGTGT--TT-GAAATGGGGAGATTTTTTTTGA---A---TTG-GTCA-CAAAAT-
181 G-CA-TACGGAGT-TCATTCCCAGT-CTAAGATCGGACCGGACCGAGGGTTGCGACAGC-ACATG
* * ** * ** ** * * * * * *** *
531729 CTTGTGCAC-TTCAAGT--TTTTAGTTGAATTTTT-TTATGC-ATGCCACAAAAATACAAGGATC
241 C-TGGGCTCGGGCATGTGCTGGT-GCCGCATTTTTCTT-CGCTGTGGCACCATCGT-C--GGAGC
* * * *
531789 A-CGTCTACCAAAAATACAAGAACCTGACTGGCGGCATTGGGATTCCGACGATCGGGGGGGCCGG
300 ATCG--T--C-------CGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-G
* *
531853 GGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCCCTTGA-ATTGGCCCCCTATCC
352 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCC
531917 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
416 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
531982 GTAGCCATTAAAGTGTCTTAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
481 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
532047 G-GTTTTTTGGTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTT-
546 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
532110 GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCGGAACCGTAAAAAGTTTTTGAAAATTGT
611 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTTGAAAATCGT
* *
532175 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGGGAAGGCTTAAGGGACCATTGTATG
675 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *** *
532240 AATTGACAAGCCATAAAAATGGCATTGGCTTACA-AAATATTTGAAGATGTGCCTAAACCTACCT
740 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA--TGAAGATGTGCCTAAACCCACCT
* *
532304 ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CC-
803 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * *
532367 CCC-CC-GGCCGTTTGTTTCGTCGGTTGGCTTTGGCAT
868 CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * *
532403 ATGGTGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGCATTGGCCGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
** * * * *
532468 ATAGAGGGGGACCCGGCCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTAAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
532533 ACGCTCATTCCGTGGGTTGACTTAGGGACACGGAGGTCATTCCCAGTCTAAGCATACGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * *
532598 TTCCCAATCTAAGATCGGACCGCACTGAAGGTTACGACAGCACATGTTGGGCTTGGGCATGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * *
532663 AGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCG-CCGGAGAACCTGACCGGCG
260 GGTGCCGCATTTTTCTTCGCT-GTGGCACCATCGTCGGAGCATCGTCC-GAGAACCTGACCGACG
* * * * *
532726 GCATTAGGTTTCCGACGATCGGGGGGGCCAGGGGACGGTGTGTGCACATGATGTGCAATGGGTGT
323 GCATTGGGGTTCCGACGATC-GGGGGGCC-GGGG--GGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
532791 TGGTACTTCGCCCTTATAATGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAA
384 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
532856 AGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
532921 TTTTCAAATGGTAAAAAAAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTGCTTGC
514 TTTTCAAATGGT---CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
532986 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTTCGAAAAAATTTAAA
576 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * * * *
533051 AAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAGTAAAAAATGAATCTTCTTGCCATGA
641 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
533116 AACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
706 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
533181 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCATCCCG
771 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
533246 TCTCTATGGCC-AGCGTAGTGCCCGCCCGCCCTCCCGCCT----GCTCGTTTCGTCGGTTGGCTT
836 TCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
*
533306 AGCCAT
900 AGGCAT
* ** * * **
533312 ACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACTGAGGGTTGCGGTAGCAGGATTGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * ** ** *
533377 GCAGAGGGGGACCTGGCCGATGCCCGGGTTACGCATCCCGTACCTCTGGCCGGCTTTGCGCCCTC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
533442 ACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
*
533499 -----A--CT--GA----ACC--A---AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCT
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
533546 GGTGCCACAGTTTTCTTCGCCAG-GGCACCATCGTCGGAGCATCG-CTGGAGAACCTGACCGACG
260 GGTGCCGCATTTTTCTTCG-CTGTGGCACCATCGTCGGAGCATCGTC-CGAGAACCTGACCGACG
* ** *
533609 ACATTGGGGTTTTGACGATCGGGGGCGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
323 GCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
533674 TACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGGACTCACACCCTCTTAAAGA
387 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
533739 GCAATTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
452 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * *
533804 TCGAATGGTGACAAAATCTTGTACACTTCGATTTTTTGGCTGAATTTTTTTTTGCATGGCAATAA
517 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
533869 AAACAAAAGGATGACGTCTTCTAAGTTTGGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
582 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
533934 CTGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAACTTC
647 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
533999 ACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAACCATAAGAATGGCATTGGCACACAAAA
712 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
534064 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCATCTCTC
777 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
534129 TGGCTGGCGTAGT--------GCCCGCCCG-CT------T-GTTTCGTCGGTTGGCTTAGGCAT
842 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
534177 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTCGCAGTAGCAAGATCGGCAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* ** *
534242 GCAGAGGGGGACCCAGCCGATCCCCAACTTGCGCATCC-CTGCCCT-TGGCCGGCTGAGCGCCTG
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGC--CCCTCTGGCCGGCTGAGCGCCCG
* * *
534305 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCTCAGTCTAAGCATACGAAGTTC
129 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
534370 ATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGC
194 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * *
534435 TGGTGCCGTATTTTTCTTTG-TCGGGGCACCA---TC---G--TCG---GAGAACCTAACCGACG
259 TGGTGCCGCATTTTTCTTCGCT-GTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACG
* * * *
534488 ACATTGGGGTTCCGGCGATTGGGGGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
323 GCATTGGGGTTCCGACGA-TCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
534553 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
386 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
534618 AGCATTTGAGA-TTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
451 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
534682 TTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTGTAGCCGAA-TTTTTTATGCATGCCAACA
516 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
534746 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTTAAAAAAT
581 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
534811 CCTGAACCACAAAAAGTTTTGAAAATGGTGAAAATTAAAAAACGAGTCGTCTTGCCATGAAACTT
646 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * * *
534876 CACGTGGAGGCTTGAGGGACCATTGTATTAATTTACAAGCCAGAAAAATGGCATTGGCATGTAGA
711 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *** *
534941 AATATGAAGATGTGCCTAAGCCCACCCGTCA-CCAATCGATCCACGGCTTGCGCATCCCGTCTCT
776 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
535005 CTGGCCGGCGTAGT------------GCCCG--T--CCGCTTGTTTCGTCGGTTGGCTTAGGCAT
841 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * **
535054 ACGGAGTTCATTCCCAGCCTAAGATCAGACCAAACCGAGGGTTGCGATAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * *
535119 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCAGGCTGAGCGCCCGC
66 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
535184 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
535249 TTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGG-ATGTGC
195 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG-GGCATGTGC
* * *
535313 TGGTGCCACATTTTTCTTTG-TCG-GAGCACCATCG-CTGGAGCATCAT-CGAAGAACCTGACCG
259 TGGTGCCGCATTTTTCTTCGCT-GTG-GCACCATCGTC-GGAGCATCGTCCG-AGAACCTGACCG
* * * * *
535374 ACTGCATTGGGGTTTCGACGATCGGGAGGGTCGGAGGGGTGTGCGCACATGATGTGAGATGGGTT
320 ACGGCATTGGGGTTCCGACGATCGGG-GGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * ** * * *
535439 TTGGTACTTGGCCCTTATAATGTCCCTCTATCAGTCATAAAACCTGGAGAACTGACACCCCCTT
383 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
535503 CTGAAAAAAC
Statistics
Matches: 8330, Mismatches: 1565, Indels: 888
0.77 0.15 0.08
Matches are distributed among these distances:
864 65 0.01
865 111 0.01
866 2 0.00
868 50 0.01
869 9 0.00
870 4 0.00
871 3 0.00
872 1 0.00
873 5 0.00
874 2 0.00
876 4 0.00
877 450 0.05
878 389 0.05
879 157 0.02
880 507 0.06
881 9 0.00
882 76 0.01
883 127 0.02
884 128 0.02
885 3 0.00
886 6 0.00
887 14 0.00
888 204 0.02
889 121 0.01
890 59 0.01
891 10 0.00
892 20 0.00
893 22 0.00
894 79 0.01
895 359 0.04
896 165 0.02
897 140 0.02
898 16 0.00
899 11 0.00
900 293 0.04
901 21 0.00
902 425 0.05
903 465 0.06
904 544 0.07
905 240 0.03
906 751 0.09
907 110 0.01
908 33 0.00
909 655 0.08
910 384 0.05
911 151 0.02
912 264 0.03
913 13 0.00
914 120 0.01
915 42 0.01
916 27 0.00
917 28 0.00
918 10 0.00
919 7 0.00
920 9 0.00
921 2 0.00
922 12 0.00
923 8 0.00
924 25 0.00
925 10 0.00
926 26 0.00
927 44 0.01
928 29 0.00
929 28 0.00
930 39 0.00
931 23 0.00
932 15 0.00
933 10 0.00
934 8 0.00
935 9 0.00
936 11 0.00
937 19 0.00
938 25 0.00
939 19 0.00
940 14 0.00
941 9 0.00
942 6 0.00
944 6 0.00
945 2 0.00
946 9 0.00
947 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGCTGTGGCACCATCGTCGGAGCATCGTCCGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
Found at i:529861 original size:26 final size:26
Alignment explanation
Indices: 529825--529874 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
529815 GACTGAGGCA
*
529825 TACGGAGTTCATTTCCAATCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
*
529851 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
529875 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:531384 original size:26 final size:26
Alignment explanation
Indices: 531348--531400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
531338 GTTGACTTAG
531348 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
531374 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
531400 G
1 G
531401 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:534368 original size:26 final size:26
Alignment explanation
Indices: 534331--534383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
534321 GTTGACTTAG
* * * *
534331 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
534357 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
534383 G
1 G
534384 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:535238 original size:26 final size:26
Alignment explanation
Indices: 535209--535261 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
535199 GTTGACTTAG
535209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
535235 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
535261 G
1 G
535262 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:537757 original size:26 final size:26
Alignment explanation
Indices: 537728--537780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
537718 GTTGACTTAG
537728 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* *
537754 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
537780 G
1 G
537781 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:538317 original size:903 final size:903
Alignment explanation
Indices: 535952--544209 Score: 10471
Period size: 903 Copynumber: 9.3 Consensus size: 903
535942 GTTGACTTAG
* * * *
535952 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
536017 CTC-AGGCCTGTGCTGGTGTCGTATTTTTCTTC-CCGAGGTACCATCGTCGGAGCATCATCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * * *
536080 AACATAACCGGCGGCATTGGGGTTCCGACAATC-GGGGGG-CGGGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGT
** * *
536143 GCTTTGGGTGCTGGTACCTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
536208 CACCCCCTTAAAGAGCATTTGCGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAT
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
* *
536273 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGACTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
536337 GTGCATGCCAAAAAAAATACAAGGATCACGTCCACCTACTTTGGGGACAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
536402 AATTTTAAAAAATCCAAAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
536467 TGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
536532 ACTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
536597 GCATCCCGTCTCTCTGGTCGATGTAGTGCCTGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * *
536662 CTGAGGCATACGAAGTTCATTCCCATTCTAAGATCG-GACCGGA-TCGAGGGTTGCGGCAGCAGG
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GAGACCGGACT-GAGGGTTGCGGCAGCAAG
* * * * * * ** *
536725 ATTGACAGCA-TGCAACGGGGGACCC-GACTGATCCCCGGCTTGCCCGTCTTGCCCCTCTGGTCG
778 ATCGGCAGCACT-CAA-AGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * **
536788 GCTGAGCGCCCGCTCGGTCGTTTCGTGGGTTGACTTAGGCATACCAAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** * ***
536852 GCATATAGAGTTCATTGCCAGTCTAAGATCGAACCAGA-CAGATGGTTAAAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA-AGGGTTGCGGCAGCACATGCTGG
* * * ** * * ** *
536916 TCTCGGGCATGTG-TTGTGCCATATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGTG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
* * ** * *
536980 AACCTGACCAGCGGTATTGGGGTTTTGGCGATCGGGGGGGCCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGT
* *
537045 GCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
537110 TACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
* * * *
537175 TGGGGACA-TTTTTTCAAATGGACAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
537239 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
537304 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
537369 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGA-AAGCCATAAAAATGG
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGG
* * *
537433 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATTCATGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
537498 CGCATCCCCTTTCTCTGGCCGGCATAGTGCCCGTCCGTCCACCCGCTTGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTG
*
537563 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAGAGACCGGACTGAGGGTTGCGGCAGCAAGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCAAGA
* *
537628 TCGGCAGCACTCATAAGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
779 TCGGCAGCACTCA-AAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
537693 AAACGGCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
537754 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
537819 CTCGAGCATGTGATGGTGCCACATTTTTCTTCATCGGGGCACCATCTTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
537884 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCCTGGGAGGTGTTCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
*
537949 CGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
538014 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
* *
538079 GGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
538144 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
538209 A-TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
538273 GCCATGAAACTTGACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
538338 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCATATCGATCCACGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
538403 CATCCCGTCTCTCTGGCCGACATAGTGTCCGCCCGTCCGCCCGTCGGCTCGTTTCGTCGGTTGGC
651 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
* * * ** *
538468 TTAGGCATACGGACTTCATTCCCAGTCAAAGATGAGACCGCACCAAGGGTTGTGGCAGCAAGATC
716 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCAAGATC
* * *
538533 GGCAACA-TGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTG
781 GGCAGCACT-CAAA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * *
538597 AATGCCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAA
844 AGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
538658 G-AT-CGG-G--------C---C--AGA-C---C--G----AGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
538697 CTCGGGCAAGCGATGGTGCCGTATTTTTCTTCACCGGGGCACCATCATCGAAGCACCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* ** * * * *
538762 ACCTGATCGATGGTATT-GGGTTTCGACAATCGGGCGGGCCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
* * *
538826 CGATGAGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
538891 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
*
538956 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTTGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * *
539020 ATGCATGCCAACAAAAATAAAAGGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAA
390 GTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
539085 AAATTTTAAAAATTCCCTAACCGCATAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
539150 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGA-AAGCCATAAAAATG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATG
* * *
539214 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATTCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
539279 GCGCATCCCCTTTCTCTGGCCGGCATAGTGCCCGTCCGTCCACCCGCTTGCTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTT
*
539344 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAGAGACCGGACTGAGGGTTGCGGCAGCAAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCAAG
* *
539409 ATCGGCAGCACTCATAAGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
778 ATCGGCAGCACTCA-AAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
539474 TAAACGGCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
539536 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
539601 CTCGAGCATGTGATGGTGCCACATTTTTCTTCATCGGGGCACCATCTTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
539666 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCCTGGGAGGTGTTCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
*
539731 CGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
539796 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
*
539861 GGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
539926 TACATGCCAGCAAAAGTACAAGGATCACGTCTACCAAGTTTGAGGGCCAAAACTCCTTCTGAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCCGAAAA
* * * ** *
539991 AATTTTAAAAAATCCCGAACCG-TAAAATTTTTGAAAATCATGAAAAATAGAAAATTAGTCCTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
540055 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCCTTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *** *
540120 ATTTGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATTGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
540184 GCATCCCGTCTCTCTGGCCGGCGCAGAGCCCG--C--CCGCCCGCCCGCTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * * * ** * * *
540245 CTTAGCCATACAGAGTTCATTCTCATTCTAAGATTAGATTGAACTGAGGGTTGCGACAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCAAGAT
* * * * * * * * *
540310 CGACAGCACGCAAAGGGGGCCCCGACTGATCTCTGTCTTGTGCATCCCGCCCCTCTGGCCGGCTG
780 CGGCAGCACTCAAAGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
540375 AGCGCCCGCACGCTCGTTTCATGGGTTGACGTAGGCATACGGATTTCATTCCTAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
540435 G-AT-C-G-G---------A--C------CGGACT-G----AGGGTT---G-TG-----GCT--G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
540463 --C-A-CA--TGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCGTAGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * * *
540522 ACCTGACCGACAGCATTTGGGTTCCGGCGATCGGGGGGGCCGGGTGGGGTGTGCGCACATAATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGG-GGGGTGTGCGCACATGATGT
* *
540587 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
540652 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
*
540717 TGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
540782 GTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAG-TTGGGACCAAAACTCCTTGCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** *
540846 TATTTTAAAAAATCCCGAACAGTAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCCGAACCG-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
540911 TTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** * * * *
540976 CATTGGAATGCAAAAATATGTGGATGTGCCTAAAGCCACCTACCACTCTATTGATCCACGGCATG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
541041 TGCATCTCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCG--T--TCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTG
* * * * *
541102 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGGCTGGA-TCGAGGGTTGTGGCAGC-AG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACT-GAGGGTTGCGGCAGCAAG
* * ** *
541165 AATCGGCAGCACGT-AGATGGGGACTCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
778 -ATCGGCAGCAC-TCA-AAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
541229 GCTGAGCGCGCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
541293 GCAAATAGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCAAGGGTTGCGGCAGCACATGCTGG
* * * *
541357 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGAGGCACCATCGCCTGAGCATGC--CGG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCAT-CATCGG
* * * * * *
541419 AGAACCTTATCGGCGGCATTGGGGTTACGGCGATC-GGGGGGCCTGGGGGGGTGTGCACACAAGA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCT-GGGGGGTGTGCGCACATGA
541483 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
541548 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-T
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
*
541612 AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
322 A-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * * *
541677 TTTTGTGCATGCCAGCAAAAATACACGGATCACATCTACCATGTTTTGGGCCAAAACTCCTGCTG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
541742 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
541807 GTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
541872 TGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
541937 TTGCGCATCCCGTCTCTTTGGCCAACGTAGTGCCCGCCCGTCCGTCCGCCTGCTCGTTTCATCGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGG
* * * * * * *
542002 TTGGCTCAGGCATACGAAATTCATTCCCAGTCTAAGATTAGATCAGACTGAGGGTTGTGGCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCA
* * * * * * *
542067 AGATCGGCAGCACGCGAAGGGGGACCCGATCGATCCTCGGCTTACGCATCCCGTCCCTTTGGCCG
776 AGATCGGCAGCACTC-AAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
542132 GCTGAGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
542196 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGA-CAGAGGTTTACGATAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA-AGGGTTGCGGCAGCACATGCTGG
* * * * * *
542260 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCACGATCGCCGGAGCATCACCGGAA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
* * *
542324 AACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCTGGGGGGTGTGCGCACATGATG
* *
542389 TGCGATGGGAGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
542454 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
* * *
542519 ATAGGGACATTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
542584 T-TCCATG-AAAAAAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
389 TGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
542647 AAAA-TTT-CAAAATCTCGAATCGC-AAAAGTTTTGAAAATCGCTGAAAAATAGAAAAACGAGTC
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCG-TGAAAAATAG-AAAACGAGTC
* * *
542709 GT-TTGCCATGAAACTTCACGTGAAGGCTTAAAGGTCCATTGTGTGAA-TTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
542772 TGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AACCCACCTACCAACCC-ATCGATCCACAG
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCACGG
* * * *
542835 CATGCGCATCCCGTCTCTCTGGCCGACGT-GATGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTT
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAG-TGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTC
* * * * * * *
542899 GGTTGGCTTAGGTATACAGAGTTTATTCCCGGTCTAAGATCG-GACTGGACCGAAGGTTGCGGCA
709 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GAGACCGGACTGAGGGTTGCGGCA
* * * * * ** * * *
542963 GCAGGATCAGCAGCACACAGAGGGTGACCTGACCGATCCCTGGCTTGCGCATCTCTCCCCTCTGG
773 GCAAGATCGGCAGCACTCAAAGGG-GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
543028 CCAGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATAC-G-G---------AG--T
837 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
543080 --
902 AA
* * *
543080 ---T-C-----TC--TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
543134 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * **
543199 ACCTGATCGACGGCATTGGCGTTCCGACGATCGGGGGGGCCGGCGGGTGGTGTGCATACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTG-GGG-GGTGTGCGCACATGATG
*
543264 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
543329 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTCAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
* *
543394 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
543459 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * **
543524 AAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
543589 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
543654 CATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
543719 TGCATCCCATCTCTATGGCCGGCGTAGTGCCCGCCCGCCCGTTCACCCGCCTACTCGTTTCGTCG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCG----CCCGCCTGCTCGTTTCGTCG
* * * ** * *
543784 ATT-GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGTAG-
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGC
* * * * *
543847 AAGGATCAGCAGCACACAGAGGGGAACCCGATCGATCCCC-GCTTGCGCATCCCGCCCCTCTAGC
775 AA-GATCGGCAGCACTCAAAGGGG-ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
543911 CGTCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
838 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
543976 A
903 A
* * ** * **
543977 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
544042 CTCGGGCATGTTCTGGTGCCACATTTTTCTTCGTTGGAGCACCATCATCGGAGCATCATCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
544107 ACCTGACCGACGGCATTGGGGTTTCGACAATCGGGGGGGTC-GGAGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGG-GGGGTGTGCGCACATGATGT
* ** * *
544171 GAGATGGGTTTTGGTACTTAGCCCTTATAATGGCCCCCT
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
544210 TGGCCGGCGT
Statistics
Matches: 6401, Mismatches: 769, Indels: 370
0.85 0.10 0.05
Matches are distributed among these distances:
855 39 0.01
856 88 0.01
857 367 0.06
858 214 0.03
859 10 0.00
860 2 0.00
861 1 0.00
862 9 0.00
864 3 0.00
869 1 0.00
870 1 0.00
871 1 0.00
873 89 0.01
874 57 0.01
875 202 0.03
876 53 0.01
877 269 0.04
878 253 0.04
879 422 0.07
880 67 0.01
881 3 0.00
882 65 0.01
883 81 0.01
884 26 0.00
886 2 0.00
887 2 0.00
888 6 0.00
889 1 0.00
893 6 0.00
894 3 0.00
895 4 0.00
896 1 0.00
897 3 0.00
898 21 0.00
899 845 0.13
900 251 0.04
901 114 0.02
902 748 0.12
903 970 0.15
904 617 0.10
905 294 0.05
906 52 0.01
907 3 0.00
908 135 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACTGAGGGTTGCGGCAGCAAGATC
GGCAGCACTCAAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:539539 original size:26 final size:26
Alignment explanation
Indices: 539510--539562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
539500 GTTGACTTAG
539510 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* *
539536 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
539562 G
1 G
539563 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:542206 original size:26 final size:26
Alignment explanation
Indices: 542170--542222 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
542160 GTTGACTTAG
542170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
542196 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
542222 G
1 G
542223 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:543987 original size:26 final size:26
Alignment explanation
Indices: 543951--544003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
543941 GTTGACTTAG
*
543951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
543977 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
544003 G
1 G
544004 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:544672 original size:473 final size:472
Alignment explanation
Indices: 543775--544679 Score: 1330
Period size: 473 Copynumber: 1.9 Consensus size: 472
543765 CCGCCTACTC
543775 GTTTCGTCGATTGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTT
1 GTTTCGTCGATTGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTT
* * * *
543840 GCGGTAGAAGGATCAGCAGCACACAGAGGGGAACCCGATCGATCCCCGCTTGCGCATCCCGCCCC
66 ACAGTAGAAGGATCAGCAGCACACAGAGGGGAACCCGACCGATCCCCGCTTGCGCATCCCGCCAC
* * * *
543905 TCTAGCCGTCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
131 TCTAGCCGGCTGAGCGACCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
* * * * *
543970 AGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACA
196 AGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGAACGGACCAGACCAAGGGTTGCGACAGCACA
* * * * *
544035 TGCTGGGCTCGGGCATGTTCTGGTGCCACATTTTTCTTCGTTGGAGCACCATCATCGGAGCATCA
261 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATAGGAGCACCAGCACCGGAGCATCA
* * *
544100 TCGAAGAACCTGACCGACGGCATTGGGGTTTCGACAATCGGGGGGGTCGGAGGGGTGTGCGCACA
326 TCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGTCCGCACA
*
544165 TGATGTGAGATGGGTTTTGGTACTTAGCCCTTATAATGGCCCCCTTGGCCGGCGTATTGCCTGCC
391 TGATGTGAGATGGGTGTTGGTACTTAGCCCTTATAATGGCCCCCTTGGCCGGCGTATTGCCTGCC
544230 CGTCCGCCTGCCCACTT
456 CGTCCGCCTGCCCACTT
* * * *
544247 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGT
1 GTTTCGTCGATT-GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGT
* * ** * *
544312 TACAGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
65 TACAGTAGAAGGATCAGCAGCACACAGAGGGGAACCCGACCGATCCCC-GCTTGCGCATCCCGCC
* *
544377 ACTCTGGCCGGCTGAGTGACCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
129 ACTCTAGCCGGCTGAGCGACCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
* * *
544442 CCAGTCTAAGCATATAGAGTTCATTCCCAGTCAAAGAACGGACCGGATCAAGGGTTGC-AGCAGC
194 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGAACGGACCAGACCAAGGGTTGCGA-CAGC
**
544506 ACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCAGG-GCACC-GCACCGGAGC
258 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAT-AGGAGCACCAGCACCGGAGC
* * * * *
544569 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTCCG
322 ATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGTCCG
* * *
544634 CACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCC
387 CACATGATGTGAGATGGGTGTTGGTACTTAGCCCTTATAATGGCCC
544680 ACTATCCCTC
Statistics
Matches: 382, Mismatches: 47, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
472 11 0.03
473 196 0.51
474 173 0.45
475 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (472 bp):
GTTTCGTCGATTGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTT
ACAGTAGAAGGATCAGCAGCACACAGAGGGGAACCCGACCGATCCCCGCTTGCGCATCCCGCCAC
TCTAGCCGGCTGAGCGACCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
AGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGAACGGACCAGACCAAGGGTTGCGACAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATAGGAGCACCAGCACCGGAGCATCA
TCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGTCCGCACA
TGATGTGAGATGGGTGTTGGTACTTAGCCCTTATAATGGCCCCCTTGGCCGGCGTATTGCCTGCC
CGTCCGCCTGCCCACTT
Found at i:546203 original size:26 final size:26
Alignment explanation
Indices: 546167--546219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
546157 GTTAACTTAG
546167 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
546193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
546219 G
1 G
546220 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:546312 original size:866 final size:867
Alignment explanation
Indices: 544396--550433 Score: 6612
Period size: 900 Copynumber: 6.9 Consensus size: 867
544386 GGCTGAGTGA
* * * **
544396 CCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATAGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
544461 TTCATTCCCAGTCAAAGAACGGACCGGATCAAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCAT
66 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCAT
* * * * * *
544525 GTGCTGGTGCTGCATTTTTCTTCATCAGGGCACC-GCACCGGAGCATCGTCGGAGAACCTGACCG
130 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* * *
544589 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTG
195 GCGGCATTGGGGTTCCGGTGAT---------C-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
544654 TTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTCACACCCCATTA
250 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
544719 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
315 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
544784 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCA
380 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
544849 ACAAAAATACAGGGATTACATCTACCAAGATTGGGGCCAAAACTCATTTCGAAAAAATTTTAAAA
445 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * * *
544914 AATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAGACAGAAAACGAGTCATCTTGCCATGAAA
510 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
544979 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATAT--CATTGGCACG
575 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACG
* *
545042 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGT
639 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
545107 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAGGCAT
704 CTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCAT
545172 ACGGAGTTCATTCCTAGTCTAAGATTAGACCAGA-CTGAGGGTTGCGGCAGCAGGATC-AGCAGC
765 ACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGA-CAGC
* * ** * *
545235 ATGCAGAAGGGGACCCGATCGATC--CCCGGCTTGCGCATC
828 ACGCAGAGGGGGACCCGATCCCTCTGGCCGG-TTGAGCATC
* *** * **** ** ***** * * *
545274 CCGC-C-C-C-TTTGGCCAGCTGAGCGCCCGC--ACGCTCGTTTCATGGGTTGACTTAGGCATAT
1 CCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACG-GAG-TTCATTCCCAGTC-TAAGCATAC
* * * *
545333 GGAGTTCATTCTCAGTCTAAGATTGGATGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
62 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * **
545398 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGA
127 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * *
545463 CCGGCGGCATTGGGGTTCCGGTGATC-GGGGGTGTGCTCACATGATGTGCGATGGGTGGTGGTTC
192 CCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
545527 TTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
545592 TTTGAGATTTTATAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
545657 AATGGTCACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
545721 TACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTTTGAAAAAATTTTAAAAAATCCTG
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
545786 AACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG-CATGAAACTTCACG
517 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
**
545850 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
545915 TGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
647 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
545980 CC-AGCATAGTGCCTGTCTGCCTGCCCGCCCGCTCGTTTCGTCAGCTGGCTTAGGTACATGGAGT
712 CCGA-CGTAGTGCC---C-GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
546044 TCATTCCCAATCTAAGATCTA-ACCTGATCGAGGGTTGCGACGGCAAGATCGACAGCACGTAGAG
772 TCATTCCTAGTCTAAGAT-TAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
*
546108 GGGGACCCG-TCCCTCTGGCCAGTTGAGCA-C
836 GGGGACCCGATCCCTCTGGCCGGTTGAGCATC
* * *
546138 CCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
**
546203 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
66 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * * * *
546268 TGCTTGTGCCACATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATCGA
131 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
*
546333 CGACATTGGGGTTCCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
196 CGGCATTGGGGTTCCG--G-T--GA----TC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
546398 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
251 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
546463 AGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAACTGTCTAAAATGGGGACACTT
316 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
546528 TTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCACGCCAA
381 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** ** * *
546593 CAAAAATACAAGGATCATGTCTAAAAAGTTTGGGGTAAAAAATCC-TTCAAAAAAAATTTTAAAA
446 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAA
* * *
546657 AATTCCAAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
510 AATCCCGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
546721 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACG
574 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
546786 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTCCGCATCCAGT
639 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * * * *
546851 CTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
704 CTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *
546916 AGTTCATTCCCAGTCTAAGATTGGATCAGATCAAGGGTTGTGGCAGTAGGATCTATAGCACGCAG
769 AGTTCATTCCTAGTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* *
546981 AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCCCTCTGGCCGGCTGAGC-GC
834 A--GGG----G---GA----C--C---CG-A-----TCCCTCTGGCCGGTTGAGCATC
* * *
547038 CCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTGATTCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
547103 TTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATA
66 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * *
547168 TGCTAGTACCGCATTTTTC-TCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAGCGG
131 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
* *
547232 CGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGAGGGGGTGCGCACATGATGTGCGATGGGTGC
196 CGGCATTGGGGTTCCG--G-T------GATCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGC
**
547297 TGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCAACTTA
251 TGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
547362 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AACATGGGGATAC
315 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACAC
*
547426 TTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
379 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** ** * *
547491 AACAAAAATACAAGGATCACATCTAGCAAGTTTGGTACCAAAACTATTTTTGAAAAAACTTTAAA
444 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
** * * *
547556 AAATCTTGAACCGTAAAAAGTTTCGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTG-
509 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGA
* *
547620 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCAC
573 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
547685 GCACAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
638 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
547750 TCTCTCTGGCCGACGAAGTGCCCGCC-GTCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACG
703 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
547814 GAGTTCATTCCTAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGC
768 GAGTTCATTCCTAGTCTAAGATTAGACCA-GATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
547878 AGAGGGGGACCCGATCGAACCTCAGCTTACACATCCCATCCCTCTGGCCGGCTGAGC-GC
832 AGA--GGG----G---G-ACC-C-G------------ATCCCTCTGGCCGGTTGAGCATC
* *
547937 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATACGAAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * * * * *
548002 TTCATTCAAAGTCTAAGATCAGATCAGACCGAGGGTTGCAACAGCACATGCTGGACTCTGGCATG
66 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* ** * * * *
548067 TGCTGGTGTCGCATTTTTCTTTGCCGGGGCACCATCACCGGAGCATAGCTGGAGAACCTGACCAG
131 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
* *
548132 CGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
196 CGGCATTGGGGTTCCGGTGATC-----G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
548197 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
254 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
548262 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTT
319 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
548327 TCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCACAG-CAAAA
384 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACA
* * * *
548391 AAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTGTCGAAAAAATTTTAAAAAAT
448 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
* * * **
548456 CCCAAACTGGAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
513 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
548521 CACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGTAGA
578 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
548585 AATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCT
643 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
548650 TTGGCCGGCGTAATGCCCGCCT----GCCTGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTT
708 CTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
548711 CATTCCTAGTCCAAGATTGGACC-GTTTCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
773 CATTCCTAGTCTAAGATTAGACCAG-ATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * * * *
548775 GGGACCCGGT-CGT-T-ACCTGGCTGTGCATC
837 GGGACCCGATCCCTCTGGCC-GGTTGAGCATC
* * ** * * * * * * * ** *
548804 CCGC-C-C-C-TCTGGCCGGCTGAGTGACCGC--AC-G-CTCCTTTCGCGGGTTGACTCAGGCAT
1 CCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTC-CCAG-T--CT-AAGCAT
* ** * ** * * * * *
548861 ATGGAGTTCATTCGTAGTCTAAAATTAGACCGGACCAAGGGTTGCGACAGTACATGCTGGACTTG
60 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * ** *
548926 GGCATGTGCTGGTGCCGCACTTTTCTTCATCTAGGCACCATCGCAGGAGCATCGCCGGAGAACCT
125 GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * * *
548991 GACCGGCGGCATTAGGGTTTCGGCGATCGGGGGGTCGGGGGGTGTGCGTACATGATGTCCGATGG
190 GACCGGCGGCATT-GGGGTT---C---C-GGTGATCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
549056 GTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCC
247 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
549121 TTAAAGAGCATTT-AGGATTTTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGA
312 TTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
549185 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTGTTTTGTGCAT
376 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
549250 GCCAAC----A-A-AA--AT-A-G------AA----------AAAACTCCTTTCGAAAAAATTTT
441 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* * ** *
549289 AAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
506 -AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
549354 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
570 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
549419 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-AGAATCAACGGCTTGCGCAT
635 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCAT
*
549483 CCTGTCTCTCTGGCCGACGTAGTGCCCGGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
699 CCCGTCTCTCTGGCCGACGTAGTGCCC-GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *** * * * *
549548 ATACGGAATTCATTCCTAGTCTAAGATCAGATTGGACCAAGGGTTGCAGCAGCAAGATCGACAGC
763 ATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * *
549613 ACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCAGAGTGC
828 ACGCAGAGGGGGA-C---CCGAT-CCC-TC-TG-G---CC-G---GT-T-G--AGC--A-T-C
* * * * *
549676 CCGCACTCTCGTTTCATAGGTTGACTTAGACATATGGAGTTCATTCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
549741 TTCATTCCCAATCT-A-A---GATC-GA---A----T-C-A-AGCA-A-G-T--GCT---G---G
66 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * *
549779 TGC---T---GCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATC-ACGGAGAACCTGACCGG
131 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
* * *
549837 CGGCATTGGGGTTTCGGTGATCGAAGGGCCGGGGGTGTGCGCACATGACGTGTGATGGGTGCTGG
196 CGGCATTGGGGTTCCGGTGATC-----G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
549902 TACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACA-ACCCTTAAAGA
254 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
549966 GCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTT
319 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
550031 TCAAATGGTTACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
384 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
550096 AAATACAAGGATCATGTCGACCAAG-TTGGGGCGAAAAATCCTTTCGACAAAATTTTAAAAATTC
449 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* * **
550160 CTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
514 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
550225 ACTTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
579 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
550290 ATATGAATATGTGGCTAAACCCACCTACCACCCTACCAATCCACGGCTTGCGCATCCCGTCTCTC
644 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
**
550355 TGGCCGACGTAGTGCCCGCCTGCCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
709 TGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
*
550420 ATTCCCAGTCTAAG
774 ATTCCTAGTCTAAG
550434 CATATGGAGT
Statistics
Matches: 4413, Mismatches: 548, Indels: 415
0.82 0.10 0.08
Matches are distributed among these distances:
832 5 0.00
833 1 0.00
837 1 0.00
838 129 0.03
839 85 0.02
840 44 0.01
841 142 0.03
842 96 0.02
843 5 0.00
844 3 0.00
846 2 0.00
847 93 0.02
848 3 0.00
850 3 0.00
851 4 0.00
853 3 0.00
854 2 0.00
855 1 0.00
856 3 0.00
857 2 0.00
858 5 0.00
859 1 0.00
860 8 0.00
861 67 0.02
862 206 0.05
863 33 0.01
864 72 0.02
865 444 0.10
866 554 0.13
867 18 0.00
868 17 0.00
869 20 0.00
870 1 0.00
871 3 0.00
872 6 0.00
873 10 0.00
874 31 0.01
875 103 0.02
876 107 0.02
877 235 0.05
878 137 0.03
879 149 0.03
880 1 0.00
881 2 0.00
882 3 0.00
883 1 0.00
884 2 0.00
886 1 0.00
888 1 0.00
890 4 0.00
891 4 0.00
892 87 0.02
893 4 0.00
894 1 0.00
895 99 0.02
896 308 0.07
897 54 0.01
898 8 0.00
899 366 0.08
900 605 0.14
901 4 0.00
903 2 0.00
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (867 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
GTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
TCCCTCTGGCCGGTTGAGCATC
Found at i:547103 original size:26 final size:26
Alignment explanation
Indices: 547067--547119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
547057 GTTGACTTAG
* *
547067 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
547093 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
547119 G
1 G
547120 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:548007 original size:26 final size:26
Alignment explanation
Indices: 547966--548018 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
547956 GTTGACTTAG
* **
547966 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCAAAGTCTAA
*
547992 GCATACGAAGTTCATTCAAAGTCTAA
1 GCATACGAAGTCCATTCAAAGTCTAA
548018 G
1 G
548019 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATTCAAAGTCTAA
Found at i:549740 original size:26 final size:26
Alignment explanation
Indices: 549706--549757 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
549696 TTGACTTAGA
* *
549706 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
549732 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
549758 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:550443 original size:26 final size:26
Alignment explanation
Indices: 550407--550459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
550397 GTTGGCTTAG
550407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
550433 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
550459 G
1 G
550460 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:551329 original size:26 final size:26
Alignment explanation
Indices: 551299--551351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
551289 GTTGACTTAG
*
551299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
551325 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
551351 G
1 G
551352 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:552236 original size:26 final size:26
Alignment explanation
Indices: 552200--552252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
552190 GTTGACTTAG
552200 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
552226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
552252 G
1 G
552253 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:553110 original size:26 final size:26
Alignment explanation
Indices: 553081--553131 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
553071 TGACTTAGAC
*
553081 ATACGGAGTTGATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
553107 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
553132 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:553382 original size:891 final size:887
Alignment explanation
Indices: 550383--553845 Score: 4641
Period size: 891 Copynumber: 3.9 Consensus size: 887
550373 CCTGCCCATC
* * * *
550383 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
* * *
550448 TCCCAGTCTAAGATCAGACCAGACCGAGGCTTGCGACAACACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGACATGTGCTG
* * *
550513 GTGCCACATTTTTCATCGTCGGGGCACCAT-CG--T---CGGAGAACCTGACCAACGACATTGGG
131 GTGCCACATTTTTCTTCGTCGGGGCACCATACGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
* *
550572 GTTTCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
196 GTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
550637 CCTTATATTGGCCTCGTATCCCTCGTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * * *
550702 GATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTTTGAAATGGGGGCACTTTGTTGAAATGG
325 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
*
550767 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
550832 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAAATCCTGAACC
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAACC
*
550896 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAA
520 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
550961 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * **
551026 GATGTGCCTGAACCAATCTGCCACCCTATCGATCCACGGCTTGCACATCTTGTCTCTCTGGCCGG
650 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
551091 CGTAGTGCCCACCCGCCTGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
715 CGTAGT--------GCCT--CCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
551156 CCCAGTATAAGATCAGA-TCGGA-TCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGG
770 CCCAGTATAAGATCAGACT-GGACT-GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAAGGGG
* * * * *
551219 ACCCGGTTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCGGCA
833 ACCCGATCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTA
* * * *
551275 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
* ** * * *
551340 TCCCAGTCTAAGATCGGATGGGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGA-ATGTGCT
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTC-GGACATGTGCT
* *
551404 GGTGGCC-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCAGCGG
130 GGT-GCCACATTTTTCTTCGTCGGGGCACCAT--AC---GCATCGCCGGAGAACCTGACCAGCGG
**
551468 TTTTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
189 CATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
551533 TACCTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
252 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
551598 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
317 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * *
551663 TCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAA
382 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
*
551728 AAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAAAT
447 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAAT
** *
551792 CTGGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
512 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
551857 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG---TGGCACGTAGA
577 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
** * *
551919 AATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGTATCCCGGCTCT
642 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
551984 CTGGCCGGTGTAGTGCCCGCCTGCCCATCCGCCCGCTCGTTTCATCGATTGGCTTAAGCATACAG
707 CTGGCCGGCGTA------G--TG-CC-TCCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGG
** * *
552049 AGTTCATTTACAGTATAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAG
762 AGTTCATTCCCAGTATAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG
*
552114 ATA-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCC-TCA
827 A-AGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT-A
* * *
552176 CGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAAGTCTAAGCATACGGAGTTCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-TCTAAGCATACGGAGTTCA
* * * *
552240 TTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTC-GAGCATGTGC
65 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGA-CATGTGC
*
552304 TGGTGCCACATTTTTCTTCGTCGGGG-----TAC-CATCGCCGGAGAACCTGACCGGCGGCATTG
129 TGGTGCCACATTTTTCTTCGTCGGGGCACCATACGCATCGCCGGAGAACCTGACCAGCGGCATTG
* * *
552363 GGGTTCCGACGATCGGGGGGCCAGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
194 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
552428 CCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
552493 GGATTTTATAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATG
324 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* *
552557 GTCACAAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATAC
389 GTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * * *
552621 AAGGATCACATCTACTAAGTTTGGGGCCAAAACTCTTTCCGAAAGAATTTTTAAAAAATCCCAAA
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAA
* * * * *
552686 TCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
518 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
552751 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATG
583 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
552816 AAGATGTGCCTAAACCCACCTACCACCCTA-AGAATCCACGGCTTGCGCATCCCGTCTCTCTGGC
648 AAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATCCCGTCTCTCTGGC
*
552880 CGGCGTAGTG-C-CCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
712 CGGCGTAGTGCCTCCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTA
* * ** * * * *
552943 TAAGGTCAGACTGGACTGAGGGTTGCGGCAGCAGGATTGACAGCACCCAGAAGGGGAACTGACCG
777 TAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGATCG
* * * * * *
553008 ATGCCCGACTTGCGCATCCCACCCCTCTGGCTGACAGAGTGCCCGTA
842 AT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTA
* * *
553055 CGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTGATTCCCAATCTAAGTATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
* * * * * * * *
553120 TCCCAATCTAAGATCGGATCGGTCTGAGGGTTGCGGCAACACATGCTGGGCTCGGACAAGTGCTA
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGACATGTGCTG
** * * *
553185 GTGCTGCATTTTTCTTTGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCA
131 GTGCCACATTTTTCTTCGTCGGGGCACCAT-A-C---GCATCGCCGGAGAACCTGACCAGCGGCA
* ** * *
553250 TTGGGGTTCTGGTGATCGAGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTAC
191 TTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
553315 TTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAAAGCA
255 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
553380 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
320 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* *
553445 AATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAA
385 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * *
553510 TGCAAGGATCATGTCTACCAAG-TTGGGGCCAAAAAATCCTTCCG-AAAAAATTTTAAAAAATCC
450 TACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAAATTTTAAAAAATCC
* * *
553573 CGAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCA
514 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
553638 TGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
579 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
553703 TATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCT
644 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
553768 GGCCGACGTAGTGCCCTCCTGCCCGCCAGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
709 GGCCGGCGTAGTG-CCTCC-G--C-CC-GCTCGTTACGTCGGTTGGCTTAGGCATACGGAGTTCA
*
553833 TTCCCAGTCTAAG
768 TTCCCAGTATAAG
553846 CATACGGAGT
Statistics
Matches: 2278, Mismatches: 224, Indels: 131
0.87 0.09 0.05
Matches are distributed among these distances:
878 1 0.00
879 261 0.11
880 7 0.00
881 1 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 112 0.05
888 269 0.12
889 8 0.00
890 82 0.04
891 442 0.19
892 240 0.11
893 6 0.00
894 3 0.00
895 2 0.00
896 1 0.00
897 1 0.00
898 3 0.00
899 50 0.02
900 7 0.00
901 340 0.15
902 6 0.00
903 34 0.01
904 393 0.17
905 1 0.00
907 1 0.00
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGACATGTGCTG
GTGCCACATTTTTCTTCGTCGGGGCACCATACGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
GTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCTCCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAG
ATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGATCGATCC
CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTA
Found at i:553855 original size:26 final size:26
Alignment explanation
Indices: 553819--553871 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
553809 GTTGGCTTAG
553819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
553845 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
553871 G
1 G
553872 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:555657 original size:26 final size:26
Alignment explanation
Indices: 555606--555658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
555596 GTTAACTTAG
* *
555606 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
*
555632 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
555658 G
1 G
555659 ATCAGACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:556545 original size:26 final size:26
Alignment explanation
Indices: 556508--556560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
556498 GTTGACTTAG
556508 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
556534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
556560 G
1 G
556561 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.