Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 50 of 120
Found at i:5759617 original size:26 final size:26
Alignment explanation
Indices: 5759587--5759639 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5759577 CCGGTCTGAT
* *
5759587 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACAGGGAATGAAATCAGTATG
*
5759613 CTTAGACAGGGAATGAACTCAGTATG
1 CTTAGACAGGGAATGAAATCAGTATG
5759639 C
1 C
5759640 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAAATCAGTATG
Found at i:5761659 original size:489 final size:488
Alignment explanation
Indices: 5760736--5761709 Score: 1438
Period size: 489 Copynumber: 2.0 Consensus size: 488
5760726 CGGCACTACT
* *
5760736 CCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
5760801 TTCATATTTCTACATGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTACATGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
5760866 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTC
131 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
** * ** * **
5760931 GGTTCGAGATTTTTTCAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCT
196 GGTTCGAGATTTTTGAAAATTTTTTCGAAACCATTTTTAGCCCCAAACTTGGTAGACATGATCCT
* * *
5760996 TGTATTTTTGTTGGAGTGCATAAAACAATTCATCTAAAAAATCAAAGTGTACAAGATATTGTGAC
261 TGTATTTTTGTTGCAGTGCAAAAAACAATTCAGCTAAAAAATCAAAGTGTACAAGATATTGTGAC
* *
5761061 AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
326 AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCT
*
5761126 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGG
391 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGAGGGCCAATATAAAGG
*
5761191 CCAAA-TACCATCACCCATCACACATCATGTACG
456 -CAAAGTACCAGCACCCATCACACATCATGTACG
* ** *
5761224 CCGGCCAGAGAGACGGGATGCATAAGCTTTGGATCGAT-AGCGTGGTAGGTTGGTTTAGGCACAT
1 CCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAAG-GTGGTAGGTGGGTTTAGGCACAT
*** * *
5761288 CTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
65 CTTCATATTTCTACATGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
5761353 CTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC-TCGATTTTTGAAA-TTTTT
130 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT-GATTTTTGAAACTTTTT
* * *
5761416 ACGGTTTGGGATTTTTGAAAATTTTTTCAGAAATCCTTTTTTAGCCCCAAACTTGGTAGACATGA
194 ACGGTTCGAGATTTTTGAAAATTTTTTC-GAAA-CCATTTTTAGCCCCAAACTTGGTAGACATGA
* * * *
5761481 TCCTTGTATTTTTGTTGTCA-TGCACAAAAAC-ATTTAGCTAAAAACTCGAAGTGTACAAGATTT
257 TCCTTGTATTTTTGTTG-CAGTGCA-AAAAACAATTCAGCTAAAAAATCAAAGTGTACAAGATAT
* **
5761544 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
320 TGTGACAATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
* * * *
5761609 AAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
385 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGAGGGCCAATA
* *
5761674 TAAAGGCAAAGTACCAGCACCCTTCGCACATCATGT
450 TAAAGGCAAAGTACCAGCACCCATCACACATCATGT
5761710 GCGCACACCC
Statistics
Matches: 434, Mismatches: 45, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
487 31 0.07
488 176 0.41
489 221 0.51
490 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (488 bp):
CCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTTGAAAATTTTTTCGAAACCATTTTTAGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGCAGTGCAAAAAACAATTCAGCTAAAAAATCAAAGTGTACAAGATATTGTGAC
AATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGAGGGCCAATATAAAGG
CAAAGTACCAGCACCCATCACACATCATGTACG
Found at i:5762804 original size:26 final size:26
Alignment explanation
Indices: 5762768--5762820 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5762758 CTGATTCGAT
5762768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5762794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5762820 C
1 C
5762821 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5763698 original size:26 final size:26
Alignment explanation
Indices: 5763669--5763718 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5763659 GGTCTGATCT
5763669 TAGACTGGGAATGAACTCCGTATGTG
1 TAGACTGGGAATGAACTCCGTATGTG
*
5763695 TAGACTGGGAATGAACTCTGTATG
1 TAGACTGGGAATGAACTCCGTATG
5763719 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTG
Found at i:5763916 original size:4 final size:4
Alignment explanation
Indices: 5763900--5763933 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
5763890 GAGGAAATGA
* *
5763900 GCGG GCAG GCGG GCGG GCGG GCGT GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
5763934 ACTACACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.03, C:0.26, G:0.68, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:5765522 original size:26 final size:26
Alignment explanation
Indices: 5765493--5765543 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5765483 CCGATCCGAT
5765493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5765519 CTTAGACTGGGATTGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
5765544 AACCAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5765882 original size:905 final size:903
Alignment explanation
Indices: 5761220--5766895 Score: 7373
Period size: 899 Copynumber: 6.3 Consensus size: 903
5761210 ACACATCATG
** ** * *
5761220 TACGCCGGCCAGAGAGACGGGATGCATAAGCTTTGGATCGATAGCGTGGTAGGTTGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
5761285 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * **
5761350 AGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCTCGATTTTTGAAA-TTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
* * **** * *
5761414 TTACGGTTTGGGATTTTTGAAAATTTTTTCAGAAATCCTTTTTTAGCCCCAAACTTGGTAGACAT
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AA-GGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
5761479 GATCCTTGTATTTTTGTTGTCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
5761544 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
5761609 AAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * **
5761674 TAAAGGCAAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCCCC-AGCCCCTCGATCACC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTC
* * * * *
5761738 GGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGACAAAGGTGCCCCGACGAAGAAA
519 GAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
5761803 AATATGGCACCAGCACATGGCCGAGCCCA-CATGTGCTGCAGCAAAACC-CGGTCCAGTCCGATC
584 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC-AACCCTCGGTCCAGTCCGATC
* * *
5761866 TTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
648 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * ** * * *
5761931 CAAAATGAGTGTACGGGCGCTCAGTTGGCCAGAAGGGCGGGATGCGCAAGTCGGGGATCGATCGG
713 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * * * *
5761996 GTTCCCCTCTGGGTGTTGTCGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAGG
778 GTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * * *
5762061 AATGAACTCCGTATGCCTAAGCCAACCGATC-AAACAAGTGGGCGAGCGGGCGGGCAGGCAC
843 AATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCGGGAGGGCGGGCGGGCAC
* * *
5762122 GACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGATAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
5762187 CATCTTCATAGTTCTACATGCCAATGCCATTTTTATGGTTTGTTAGTTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
5762252 AGCCTTCACGTGAAGTTTCATGGCAAGACGGCTAGTTTTTTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
* *
5762317 TTACGGTTCGAGATTTTTTAAAATTTCTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
5762381 ATTCTTGTATTTTTTTTGGCATGCACAAAAAAGTTGAGCTAAAAACTCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
5762446 GTGACCATTTGAAAAAATTGTCTTCAATTT-AGACACTTTAATGGCTACTGGTAGCAAACCTGTA
325 GTGACCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* ** * *
5762510 AAATCTTAAATGCTCTTTAAGGGGGCATGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
5762575 TAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACA-CCCCCTAGCACCCCCGATCGT
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCCGATCGT
* * *
5762639 CGAAACCCTAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGACGGTGCCCCGACGAAGAA
518 CGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * ** * *
5762704 AAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT-CTGATTCGAT
583 AAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAG-TCCGAT
5762768 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
647 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
5762833 ACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGTTGCGTAAGCCGGGGATCGGTCG
712 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * *
5762898 GGTCCCCCTCCGCATGCTGCCGATCCTACTATCGCAACCCTCGGTCCGGCCCGATCTTAGACTGG
777 GGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * *
5762963 GAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGA----GCGGGTGGGCGGGCGGGCAC
842 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCGGGCGGGCAC
* *
5763021 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
5763086 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * **
5763151 AACCTTCACGTGAAGTTTCATGGCAAAACCACTCGTTTTCTGTTTTTCATGATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
* * * *
5763216 TTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGGCCCAAACTTGGTAGACGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
5763281 TCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
** * *
5763346 TCTCCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
5763411 ATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
5763476 AAGGCCATGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCTGATCGTCGA
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGA
* * ** * * **
5763541 AACCCCAACGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATTGTGCCCCGGTGAAGAAAAA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
** ** * * * *
5763606 TGCGGCACCAGCACATGCTTGAGCCGAGCATGTGCTGCTG-AGACCGTCGGTCCGGTCTGATCTT
586 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCA-ACCCTCGGTCCAGTCCGATCTT
*
5763670 AGACTGGGAATGAACTCCGTATG-TGTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
650 AGACTGGGAATGAACTCCGTATGCT-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
5763734 GAAAC-AGACGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAG
714 GAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * * * *
5763798 GTCCGCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGATCTGATCCAATTTTATACTGGG
778 GTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * * *
5763863 AATGAACTCCGTATGCCTAAGCGAGCTGAGGAAATGAGCGGGCAGGCGGGCGGGCGGGCGTGCGG
843 AATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-A-GCGGGC-GG-GAG-G-GCGG
5763928 GCGGGCAC
896 GCGGGCAC
* **
5763936 TACACCGGCCAGAGAGACGACATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ***
5764001 CATCTTCATATTTTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
5764066 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTTTTTTTCACA-ATTTTTGAAACTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AGATTTTTGAAACTT
*
5764130 TTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
5764194 ATCCCTATATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
5764258 GTGACCATATTGAAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGCCAGCAACCCTGG
325 GTGACCAT-TTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-G
* *
5764323 AAAAATC-CAAATAGCTCTTTAA-GGGGTGTGAGTTCCTCAAGGTTTTGATGAGGGATAGGGGGC
387 TAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTT-CTCGAGG-TTTGATGAGGGATAGGGGGC
* * * * * *
5764386 CACTATAAGGGCAAAGTACCAGCAGCCCATCGTAGATGCATGT--GCAGCACCCCCTG-GCCCCC
449 CAATATAAGGGCCAAGTACCAGCA-CCCATCGCACAT-CATGTGCGCA-CACCCCCCGACCCCCC
* * * * * * *
5764448 TGATCGTCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
511 CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* **
5764513 CGAAG-AAAATATAGCACCAAGCACAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC
576 CGAAGAAAAATATGGCACC-AGCAC-ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
* * *
5764577 AGTCCGATCTTAGACTGGG-ATGAACTCC-CATGC-TA-ACTGGGGAATAGAACTTCATATGACC
639 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAAT-GAACTCCGTATG-CC
** *
5764638 TAAGTC-ACCC-CGAAAACGAGCGTGGCGAGGCTTTCAGCCAGCCAGAGGGGCGGGATGCGCCAA
701 TAAGTCAACCCACG-AAACGAGCGT-GCG-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCG-CAA
* * * * * * * *
5764701 GCCGGGGATGCGAGCCGGGTCCCCCACTGTGTGCTGCTGATCCTGCTACCGCAACCCTCAGTTTA
762 GCCGGGGAT-CG-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTG
* * *
5764766 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGC-GGA
825 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGA
5764830 CGGGCGGGCGGGCAC
890 -GGGCGGGCGGGCAC
* *
5764845 TACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
5764910 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCTCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
5764975 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
* * * * * * * *
5765040 TTGCGGTTCGGGATTGTTTAAGATCTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACATTA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
5765105 TCCTTGTATTTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
5765170 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACGGGCAGTAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
5765235 ATCTGAAATGCTCTTTAAGAGGGTGAGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
5765300 AGGGCCAAATTTCCAGCACCCATCGCACATCATTTGCGCACACCCCCTCGACCCCCCCGATCGCC
456 AGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGACCCCCCCGATCGTC
* * * * * **
5765365 GGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGACAATGGTGCTCCGGTGAAGAAA
519 GAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
*
5765430 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCC-GATCCGAT
584 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCAG-TCCGAT
* *
5765493 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTGAACTCCGTATAACC-AAGTCAACC
647 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGTCAACC
* * * ** *
5765557 CACGAAACGAGCGTGCGGCCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCAAGGATCGGCC
711 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
** * * * **
5765622 GGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCGCAACCCTCAGTTTGGTTTGATCTTAGACTG
776 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * *
5765687 GGAATCAACTTCGAATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCAGGCGGGCAC
841 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCGGGCGGGCAC
* * * * *
5765750 TATGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
5765815 CATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
5765880 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
* * * **
5765945 TTACGGTTTGGGATTTTTGAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGTTGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * * *
5766010 TCCTTGTA-TTTTGATTGGTATGTATAAAAAAATTCAGCTAAAAAGTCGAACTGTAAAAGATTTT
261 TCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
5766074 GTGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
5766139 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTATGATGGGGGATAGGGGGCAAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
5766204 AAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCG-ACACCCCCC-A-GCCCCCTATCGTCG
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCG
* * * * *
5766266 AAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTTCGACGATGGTGCCCTGATGAAGAAAA
520 AAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * * *
5766331 TTGTGACACCAGCACATGCCCGAGCCAAGCATGTTCTACTGCAACCCTCGGTCCAGTCCGATCTT
585 ATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTT
* *
5766396 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCATATGCCTAAGTCAACCCACG
650 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * **
5766461 AAACGAGCGTGCTGGCGCTCAGTCGGCCAGAGGGGTGGGATTCGCAAGTTGGGGATCGGTCGGGT
715 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * * * ** *
5766526 CCCCCTCTGCATGCTGCCAATCATGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA
780 CCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * * * * *
5766591 TGAACTTCGTATGCCTAAGCCAACCGACAAAACAAACGGGTGGGCGGTCGCGCGGGCAC
845 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCGGGCGGGCAC
**
5766650 TACGTAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
5766715 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
5766780 AGCTTTCACGTGAAGTTTTATGGCAAGACGACTCGTTCTCTGTTTTTCACA-ATTTTTGAAACTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AGATTTTTGAAACTT
* **
5766844 TTTACGGTTCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
5766896 ACTGGTTCGT
Statistics
Matches: 4179, Mismatches: 513, Indels: 166
0.86 0.11 0.03
Matches are distributed among these distances:
898 9 0.00
899 766 0.18
900 582 0.14
901 239 0.06
902 277 0.07
903 260 0.06
904 32 0.01
905 520 0.12
906 10 0.00
907 58 0.01
908 115 0.03
909 354 0.08
910 101 0.02
911 57 0.01
912 5 0.00
913 51 0.01
914 68 0.02
915 284 0.07
916 55 0.01
917 138 0.03
918 93 0.02
919 18 0.00
920 4 0.00
921 83 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGA
AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCGGGCGGGCAC
Found at i:5766422 original size:26 final size:26
Alignment explanation
Indices: 5766393--5766445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5766383 CCAGTCCGAT
*
5766393 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5766419 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5766445 C
1 C
5766446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5766923 original size:90 final size:90
Alignment explanation
Indices: 5766812--5766988 Score: 327
Period size: 90 Copynumber: 2.0 Consensus size: 90
5766802 GCAAGACGAC
**
5766812 TCGTTCTCTGTTTTTCACAATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGG
1 TCGTTCTCTGTTTTTCACAATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGG
5766877 AAGGAGTTTTGGCCCCAAAACTGGT
66 AAGGAGTTTTGGCCCCAAAACTGGT
5766902 TCGTTCTCTGTTTTTCACAATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGG
1 TCGTTCTCTGTTTTTCACAATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGG
*
5766967 AAGGTGTTTTGGCCCCAAAACT
66 AAGGAGTTTTGGCCCCAAAACT
5766989 AGTAGACATG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.47
Consensus pattern (90 bp):
TCGTTCTCTGTTTTTCACAATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAAACTGGT
Found at i:5767595 original size:26 final size:26
Alignment explanation
Indices: 5767544--5767595 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5767534 CCATTCTGAT
* ** *
5767544 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAAACCATATG
5767570 CTTAGACTGGGAATGAAAACCATATG
1 CTTAGACTGGGAATGAAAACCATATG
5767596 AATAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAAACCATATG
Found at i:5768470 original size:26 final size:26
Alignment explanation
Indices: 5768441--5768491 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5768431 CTGGTCCGAT
5768441 CTTAGACTGGG-ATGGAACTCCGTATG
1 CTTAGACTGGGAAT-GAACTCCGTATG
5768467 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
5768492 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5769382 original size:26 final size:26
Alignment explanation
Indices: 5769346--5769400 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
5769336 GGTCTGATCA
*
5769346 TAGACTGGGAATGAACTCCGTATTCT
1 TAGACTGGGAATGAACTCCGTATGCT
5769372 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
5769398 TAG
1 TAG
5769401 GTCAACCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:5769544 original size:904 final size:892
Alignment explanation
Indices: 5767541--5773058 Score: 6775
Period size: 904 Copynumber: 6.1 Consensus size: 892
5767531 AGTCCATTCT
* ** * **
5767541 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAAACCATATGAATAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** ** * *
5767606 CCTAGGAAACGAGCGTGCGGGGGCTCGGCCGGCCAGAGGGGCAAGATGCGCAAGCCGATGAACGA
66 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * *
5767671 CCGGGTCCCCCTCTACGTGCTATCAATCCTGTTGCCGCAACCCTCGGTCT-AGTCTGACCTTAGA
131 CCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGA-TCTGATCTTAGA
* * * * * * *
5767735 CTGGGAATAAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGC-GAGCACAACGTC
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCACTACGCC
*
5767799 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT
260 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * ** * * *
5767864 CATATTTCTGCATGTGAATGCCATTTTCATGGCTTGTAAATTCATACAATGGCCCCTTACGCCTT
325 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* **
5767929 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA-TTTTTGTG
390 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACG
* * *
5767993 GTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCGAACTTGGTAGACGTGATCCTT
454 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
5768058 GTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
519 GTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
5768123 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
584 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
5768188 AAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGC
649 AAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
5768253 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCTGAAC
714 CAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CCCCCCCGG-CCCCCCGATCGTCAGAAC
* * * *
5768318 CCCAATGTCG-CTAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGA-GAAGAAAAAT
775 CCCAATGCCGTC-GGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCC-GATGAAGAAAAAT
* * * *
5768381 GCGGCTCCAGCACATGCCTGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCTGGTCC
837 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAACCCTCGGTCTGGTCC
*
5768438 GATCTTAGACTGGG-ATGGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCA
1 GATCTTAGACTGGGAAT-GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * ** *
5768502 ACCCATGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCACAAGCCGGCCATTG
65 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** * *
5768567 GCC-GGTTCCCCTCTGCATGCTACCGATCCTGCTATCGCAACCCTTGGTCCGATCCGATCTTAGA
130 GCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGA
5768631 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGACGGGTGGGCA
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-C--G-GGGCA
* * * *
5768696 CTACGTCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGC
253 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
5768761 ACATCTTCATATTTCTATGTGCCAATGCCACTTTTATGACTTGTAAATTCATACAATGGTCCCCT
318 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
5768826 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAAATT
383 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
5768891 TTTACGATTTGGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTG
448 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
5768956 ATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
513 ATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
5769021 GTG-CTCATTCGAAATAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
578 GTGAC-CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
5769085 AAATCTCAAATGGTCTTTAAAAGGGTGCGAGTTCTC-ATGGTTTGATGAGGGATAGGGGGCCAAT
642 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAAT
* * * *
5769149 ATAAGGACCAAGTACCAGCACCCGTCGTACATCATGTGCGCATGCCCCCCCAGCCCCCTCGATCG
706 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--CCCCCCCGGCCCCC-CGATCG
* * * * * * *
5769214 TCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGGTGAGGA
768 TCAGAACCCCAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGATGAAGA
* * * * *
5769279 AAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGCT-CTGTCGCAACCCTCAGTCTGGTCT
832 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATG-TGCTG-CGCAACCCTCGGTCTGGTCC
* * * *
5769341 GATCATAGACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCTTAGGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
5769406 CCCATGAAACGAGCGTACAGACGCTCAGCCGGCCATAGGGGCGGGATGCGCAAGCCGGGGATCGG
66 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * **
5769471 CCGGGTCCTCCTCTACGTGCTATCGATCTTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAC
131 CCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGAC
* * *
5769536 TTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGC-GGGCACTACGTCG
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCACTACGCCG
* * *
5769600 GCCAGAGAGACGGGATGCGTAAGCCGTCGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
261 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** *
5769665 ATATTTCTGTGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
326 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * **
5769730 ACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
391 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
* * * **
5769795 TTGGGATTTTTTAAATTTTTTTCTGAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGT
456 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
5769860 ATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
521 ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * *
5769925 TTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTATGAAATCTCAA
586 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
5769990 ATGCTCTTT-AAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCC
651 ATGCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * ***
5770054 AAGTGCCAGCTCCCATCGCACATCATGTGCGCACACCCGGTAGGCCCCCCCGATCG-CTAGAACC
715 AAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCC-CCCGG-CCCCCCGATCGTC-AGAACC
* * *
5770118 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCT-AAGAAAAATAC
776 CCAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCC-GATGAAGAAAAATAC
** * *
5770182 GGCACCAGCACATGCCCTCGCCTAGCATGTGCTGCTGCAACCCTTGGTCTGGTCC
839 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAACCCTCGGTCTGGTCC
*
5770237 GATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCATATGCTTAGATTGG
1 GATCTTAGACTGGGAATGAACT-C-----C-------------G-------TATGCTTAGACTGG
* * ** *
5770302 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCTAGCCTGAGG
40 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
5770367 GGTGGGATGCGCAAGCCAGGGATCTGTCGGGTCCCCCTCTACGTGCTACCGATCCGGCTACGGCA
105 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCA
* ** * * *
5770432 ACACTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAAT
170 ACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
5770497 GAACGGGCGGACAGGTGGGCTGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
235 GAGCGGGC-G---GG-CGG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
5770562 GATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
293 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
*
5770627 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATGGCAAGACGACTCGTTTT
358 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** ** * ** *
5770692 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCAAAAGGACT
423 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
** * * * *
5770757 TTTGGCATCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCATAAAGAAATTCAGCT
488 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT
5770822 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
553 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
* ** *
5770887 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTTGTTCTCAAGGT
618 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
* * *
5770952 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCACACATCACGTGCGCA
683 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * *
5771017 CACCCCTCGGGGCCCTCGATCGCCAGAACCCCAATGCCATCGGTCAGGTTCTTCAGTGATGCTCC
748 C-CCCC-CCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCA-CGATGCTCC
* * *
5771082 GGCGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGACCAGCATGTGCTGTC
810 GGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-C
**
5771147 ATAACCCTTGGTCTAGTCTGATCTTAGACTGAGAATGAACTC
874 GCAACCC----TC--G---G----T---CTG-G--T---C-C
5771189 TGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
5771254 TAACCCACGAAACGAGCGTGCGAGCGCTTAGCCGGCCTGAGGGGCGGGATGCGGAAGTCGAGGAT
63 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** * *
5771319 CGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTACCGTAACCCTCAG-CTCGATCTGATCTT
128 CGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCT-GATCTGATCTT
5771383 AGACTGGGAATGAACTCCGTAAT-CCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCACTA
192 AGACTGGGAATGAACTCCGT-ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCACTA
*
5771446 CGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
256 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
5771511 TTTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
321 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
5771576 CCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
386 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* * * * *
5771641 GCAGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACCTGGTAGACGTGATC
451 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
5771706 CTTTTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
516 CTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
5771770 ACTC-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
581 AC-CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
5771834 TCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
645 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
5771899 GTGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCCCGACCCCCCGACCCCCCGAT
710 GGGCCAAGTACCAGCACCCATCGCACATC--ATGTGCGCA-----C--CCCCCCGGCCCCCCGAT
* * * * * * * * *
5771964 CGTCGGAACCCCAATGACGTCGGTTAGGTTCTCCAGCAATCCTCCAGTGATGGTGCCCTGACGAA
766 CGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGATGAA
* *
5772029 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCC
830 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCTGGTCC
* * *
5772093 GATCTTAGACTGGGAATGAACTCCGTATGATTACACTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * ** *
5772158 CCCATGAAATGAGTGTACGGTCGCTCAGCCAGCCAGA-GGGCGGGATGCGTAAGTTGGGGATAGG
66 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * ** * * ** * *
5772222 TCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTATCGAAACCCTTGGTCTGGTCTGATCCTAGAC
131 CCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGAC
** * * * * *
5772287 TCAGAATGAACTCCGCAGGCCTAAGCCAAACGACGAAACGAGCGGGTGGGAGGGCAGGCACTACG
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-CGG--GGCACTACG
* *
5772352 CCGGCCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
258 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
5772417 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCTTTAAGCC
323 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
5772482 TTCAGGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGC
388 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * * *
5772547 TGTACGGGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
453 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
5772612 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAATACTCGAAGTGTACAAGATTTTGTGAC
518 TGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
5772677 CATTTTAAAAAATTGT-CCCATTT-AAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
583 CATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
5772740 TCAAATGCTCTTT-AAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAG
647 TCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
5772804 GGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCCGGGCCCCCCGATCATCAGA
711 GGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACCCCCCC-GGCCCCCCGATCGTCAGA
* *
5772869 ACCCCAATGCCGTTGGTCAGG---T------T-CTCCGGCGATGGTGCCCCGACGAAG-AAAATA
773 ACCCCAATGCCGTCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATA
* * ** *
5772923 CGGCACCAGGACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTGC
838 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCTGGTCC
* *
5772979 GATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
5773044 CCGACGAAACGAGCG
66 CCCATGAAACGAGCG
5773059 AGCGAACGGG
Statistics
Matches: 4027, Mismatches: 473, Indels: 253
0.85 0.10 0.05
Matches are distributed among these distances:
886 128 0.03
887 22 0.01
888 1 0.00
894 1 0.00
895 12 0.00
896 670 0.17
897 124 0.03
898 34 0.01
899 4 0.00
900 117 0.03
901 89 0.02
902 17 0.00
903 243 0.06
904 947 0.24
905 55 0.01
908 1 0.00
910 1 0.00
911 2 0.00
914 1 0.00
915 1 0.00
918 1 0.00
920 188 0.05
921 265 0.07
922 192 0.05
923 4 0.00
925 2 0.00
926 1 0.00
927 109 0.03
928 10 0.00
929 284 0.07
930 460 0.11
931 5 0.00
933 1 0.00
935 1 0.00
936 1 0.00
938 1 0.00
942 1 0.00
945 3 0.00
946 1 0.00
948 1 0.00
949 1 0.00
951 1 0.00
952 1 0.00
953 1 0.00
954 3 0.00
955 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
CCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGTCAGAACCCCAAT
GCCGTCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCTGGTCC
Found at i:5770318 original size:26 final size:26
Alignment explanation
Indices: 5770240--5770310 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
5770230 CTGGTCCGAT
*
5770240 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
5770266 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
5770292 CTTAGATTGGGAATGAACT
1 CTTAGATTGGGAATGAACT
5770311 TCGTATGCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:5771198 original size:26 final size:26
Alignment explanation
Indices: 5771169--5771247 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5771159 CTAGTCTGAT
* *
5771169 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5771195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5771221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5771247 C
1 C
5771248 CTAAGTTAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5771959 original size:9 final size:8
Alignment explanation
Indices: 5771938--5771962 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
5771928 ATATGTGCAC
5771938 ACCCCCCG
1 ACCCCCCG
5771946 ACCCCCCG
1 ACCCCCCG
5771954 ACCCCCCG
1 ACCCCCCG
5771962 A
1 A
5771963 TCGTCGGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.72, G:0.12, T:0.00
Consensus pattern (8 bp):
ACCCCCCG
Found at i:5773018 original size:26 final size:26
Alignment explanation
Indices: 5772982--5773034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5772972 CCAGTGCGAT
*
5772982 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5773008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5773034 C
1 C
5773035 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5773742 original size:26 final size:26
Alignment explanation
Indices: 5773713--5773764 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5773703 CTGGTCCGAT
5773713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5773739 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5773765 TCGAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5774680 original size:26 final size:26
Alignment explanation
Indices: 5774605--5774683 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
5774595 TCGGTCCAAT
*
5774605 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5774631 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5774657 CTTACACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5774683 C
1 C
5774684 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5775904 original size:903 final size:899
Alignment explanation
Indices: 5773008--5778314 Score: 6289
Period size: 903 Copynumber: 5.9 Consensus size: 899
5772998 ACTCCGTATG
* ** *
5773008 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGAACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* *
5773073 CGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
5773138 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * *
5773203 TCTTTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
5773268 AAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
5773332 TACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAATTC-AATGTGTACA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACA
* * * * *
5773396 ATATTCTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAGTGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
5773461 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAG
454 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-G
* * *
5773526 GCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCAC-CCCTCCGACCCCTCG
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCG
* *
5773590 ATCGTCGGAACCCCATTGCCG-C--T--GG-TCT--GGT-TCTCCGGTGATGGTGCCCCGACGAA
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGTCTCCGGCGATGGTGCCCCGACGAA
* * *
5773646 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTG-GTCC
647 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGACTCC
* * * *
5773710 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGTCGAAGTCAA
712 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * *
5773775 CCGACGAAACGAGCGTGCGGGTGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
777 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGG
* * * * * * * * * * **
5773840 CCGAGTCCCCCTCTGTATGCAGCCGATCTTGCTGCCGTAACCCTCAATCTGATCCAAT
842 TCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* *
5773898 CTTAGATTGGGAATGAACACCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * * *
5773963 CGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTTGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
5774028 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGA
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
5774093 TCCCTGAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
* * * * *
5774158 AAACGTTTTGCTGTACGGGATTTTTTAAAATTTTTTCGAAGGTAGGTTTGGCCCCAAACTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAGG-AGTTTTGGCCCCAAACTTGGTA
* * * *
5774223 GATGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAATACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
5774288 GATTTTGTGACCATTTTAAAAAACTGTCCCCATTTAAGA-ACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
5774352 CTGTAAAATCTCAAATGCTTTTTAAGCGGGTGTGAGCTCTTGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGC
* * **
5774417 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACACCCCCCCGGTGCCCCCG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GACCCCCCG
* * *
5774482 ATCGTCGAAACCCCAATGTCACCGGTCAGGTTCTCC-G-G--T-----GATGGTGCCCCGACGAA
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGTCTCCGGCGATGGTGCCCCGACGAA
* * * *
5774538 GAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTCCA
647 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-----TCGG----
* *
5774603 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCTTACACTGGG
703 -TC-----C-------G-ACTCCA-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * ** * *
5774668 AATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTAGGTGCTCAGTCGGCCAGAGGG
752 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** ** ** *
5774733 GCGGGATGCATAAGCCAAGGA-CTGACCGGGTCCCCCTCTGTGTGCTATCAATCCTGCTGCCACA
817 GCGGGATGCACAAGCCGGGGATC-GGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCA
* * *
5774797 ACCCTCAGTTCGGTCAGGT
881 ACCCTCAGTCCGGTCTGAT
* * * * * * * *
5774816 CTTAGACTGGGAATGAACTCCGAATGCCTAAGCAAACCAACGAAATGTGCGGACGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
5774881 CGGGCACTATGCCAGCCAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
5774946 TAAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
5775011 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCAAGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
* * * * *
5775076 AAACTTTTTTG-GGTTCGGGATTTCTAAAAATTTTTTCGGAAGGAGTTTTGACCCCAAAGTTGGT
261 AAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGT
* * *
5775140 AAACATGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
5775205 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
5775270 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGG
5775335 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCACCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC-CCCCG
* ** *
5775400 ATCGTTGGAACCTTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCG
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG-T-CTCCGGCGATGGTGCCCCGACG
* * * *
5775465 AAGAAAAATGTC-ACACCAGGACATGCTCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGA-
645 AAGAAAAATG-CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAC
* *
5775528 TCCAATCTTAGACTGGGAATGAACTTCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGT
709 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
5775593 CAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGTGGGATGCGCAAGCCGGGGAT
774 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
* * * * * * *
5775658 TGATTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGAC
839 CGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* * * * *
5775719 CTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAACAAGGGGGCTGGCGGGTAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
5775784 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
5775849 TTAGGCACATCTTCATATTTCTGCGTGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
5775914 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
** * * *
5775979 AAACTTTTTGCGGTTCAAGATTTTTTCAAATTTTTTAGAAAGGAGTTTTGGCCCCAAATTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-CAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
5776044 GACATGATCGTTTTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
5776109 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
5776174 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGTTTGATGAGGGATAGGAGG
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGG-GG
* * *
5776238 CTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCGGGCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCG
* * * * ** **
5776303 ATCGTCGAAACCCCAACGTCGCTGGTCAGGTTCTTTGGCAATG-CTCCGATGATGGTGCCCCGAC
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG---TGTCTCCGGCGATGGTGCCCCGAC
** * * **
5776367 GAAGAAAAATATGGCACCAGCACATGTCCGAGCCCAGCATGTGCTAACGCAACCCTCGATCCGGT
644 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G-
*
5776432 CCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
702 --G-TC-----C-------G-ACTCCA-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
5776497 GGGAATGAACTCCATATGCCTAAGTCAACACACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAAA
749 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * *
5776562 GGGGCAGGG-TGCATAAGCCGAGGATCGGTCAGGACCCCCTCTGCGTGCTGCCATTACTGCTGCC
814 GGGGC-GGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCC
5776626 GCAACCCTC-GATCCGGTCTGAT
878 GCAACCCTCAG-TCCGGTCTGAT
* * * * * * * *
5776648 CTTAGATTGGGAATAAACTCCCTATGCCTAAGCCAATCGACGAAACGAGCGGGCTGGCAGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
5776713 CGGGCACTACGCTGGCCAGAGAGACGGGATGCACAAGACGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
5776778 TTAGGCACATCTTCATAATTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
5776843 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGACGACTCGTTTTCTATTTTTCATGATTTTCG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
*
5776908 AAA--------GG--C-------------A---TTTC-----------GGCCCCAAAGTTGGTAG
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
5776936 ACGTGATCCTTGTATTTATGCTGGCATGCATAAAAAAATTCAGCTAAAAACTCGATGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
5777001 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGTAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
5777066 TATAAAATCTCAAAT-CTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGCC
456 TGTAAAATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
* * * *
5777130 AATATAAGGGCCAACTGCCAGCACCCATCGCACATCATGTTCGTACACCCCCCGACCCCCTCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCC-CGAT
*
5777195 CGTCGGAACCCCAATGCTGCCGGTCA--------GGT-TCTCCGGCGATGGTGCCCCGACGAAGA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGTCTCCGGCGATGGTGCCCCGACGAAGA
* * * * *
5777251 AAAATGC-AGCACCAACACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCC-AGTCCG
649 AAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGACTCCA
* * * * *
5777314 ATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCATATGTCGAC
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
5777379 CCATGAAACGAGCGTGCGGGCACTTAGCAGGCTAGAGGGGCGGGATGCACAGGCCGGGGATCGGT
778 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGT
* * * * ** * * * *
5777444 CGGGTTCCCCTTTGCGTGCTGCCAATCCTGCTACTACAACTCTCGGTCTGGTCTAAT
843 CGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* * * * * * *
5777501 TTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACAAGCGGGCAGGC--G-A-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
5777562 CGGGCACTACGTCGGCCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
5777627 TTAGGTACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
5777692 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
** * * * ** *
5777757 AAACTTTTTATGGTTCAGGATTTTTTAATATTTTTTCAAAATGAGTTTCAGCCCCAAACTTGCTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGTA
* *
5777822 GATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
5777886 GATTTTGTGACCAATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
390 GATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
5777951 CCTGTAAAATCTCAAATGCT-TTTTAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* * *
5778015 CCAATATAAGGGCCAAGTACCCGCACCCATCGTACATCATGTGCGCACACCCCCCCACCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCG
* * * *
5778080 ATCGTCGGAAGCCCATTGCCGCCGGTCAGGTTCTCCGGTG-AT----C--T--T----CGACAAA
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGTCTCCGGCGATGGTGCCCCGACGAA
* * *
5778132 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGA-TCC
647 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGACTCC
* * * * *
5778196 AATCTTAGACTGGGAATGAACTCCATATGCTT-GACTAGAAATGAACTCCGTAAGCCTAAGTTAA
712 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
5778260 CCCACGAAACAAACGTGCAGGCGCTTAACCGGCCAGAGGGGCGGGATGCGCAAGC
777 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
5778315 TGGTGATCCT
Statistics
Matches: 3791, Mismatches: 468, Indels: 324
0.83 0.10 0.07
Matches are distributed among these distances:
849 184 0.05
852 3 0.00
853 194 0.05
854 3 0.00
855 4 0.00
857 2 0.00
859 1 0.00
864 1 0.00
869 2 0.00
870 1 0.00
872 1 0.00
873 1 0.00
874 1 0.00
875 5 0.00
877 1 0.00
878 2 0.00
879 62 0.02
882 72 0.02
883 93 0.02
884 1 0.00
886 88 0.02
887 179 0.05
888 6 0.00
889 84 0.02
890 388 0.10
891 320 0.08
892 90 0.02
893 1 0.00
895 5 0.00
897 7 0.00
898 3 0.00
899 1 0.00
902 10 0.00
903 762 0.20
904 7 0.00
905 5 0.00
906 4 0.00
907 2 0.00
908 1 0.00
909 1 0.00
912 1 0.00
913 2 0.00
914 2 0.00
916 3 0.00
917 5 0.00
918 569 0.15
919 142 0.04
920 1 0.00
921 2 0.00
924 5 0.00
925 1 0.00
926 1 0.00
927 4 0.00
928 3 0.00
929 448 0.12
930 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGTCTCCGGCGATGGTGCCCCGACGAAGAAA
AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGACTCCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGG
GTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
Found at i:5776475 original size:26 final size:26
Alignment explanation
Indices: 5776439--5776515 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
5776429 GGTCCGATCA
5776439 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
5776465 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
5776491 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
5776516 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:5777345 original size:26 final size:26
Alignment explanation
Indices: 5777316--5777368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5777306 CCAGTCCGAT
5777316 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
5777342 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
5777368 C
1 C
5777369 ATATGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:5778486 original size:26 final size:26
Alignment explanation
Indices: 5778457--5778509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5778447 CCGGTCCGAT
*
5778457 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5778483 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5778509 C
1 C
5778510 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5779411 original size:26 final size:26
Alignment explanation
Indices: 5779359--5779411 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
5779349 CTGGTCCGAT
* * *
5779359 CTTAGGCTGGGAATAAACTTCGGATG
1 CTTAGACTGCGAATAAACTCCGGATG
* *
5779385 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATAAACTCCGGATG
5779411 C
1 C
5779412 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGGATG
Found at i:5780292 original size:26 final size:26
Alignment explanation
Indices: 5780252--5780304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5780242 CTGGTCCAAT
5780252 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* * *
5780278 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
5780304 C
1 C
5780305 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:5781195 original size:26 final size:26
Alignment explanation
Indices: 5781157--5781210 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5781147 GATCCAATCT
5781157 TAGACTGGCAATGAACTCCGTATGCC
1 TAGACTGGCAATGAACTCCGTATGCC
*
5781183 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGCAATGAACTCCGTATGCC
5781209 TA
1 TA
5781211 AGTCAACACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCC
Found at i:5781976 original size:910 final size:903
Alignment explanation
Indices: 5778339--5782665 Score: 5774
Period size: 903 Copynumber: 4.8 Consensus size: 903
5778329 TCGATCCTAC
* * * * * ** * * *
5778339 TGCCACCGGTCAGGTTCCCCGACAATGCTCCGACGATGGTACCCCGGTAAAGAAAAATGTGGTAG
1 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * * * * *
5778404 CAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGA
66 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCA
*
5778469 ATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
131 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** *
5778534 TGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAGGCCAAGGATCGG-TTAGGTCCTCCTCT
196 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGA-GTCCCCCTCT
* * * * * * *
5778598 GCGTGCTGCCAATCCTGCTACCGTAACCCTCAATCCGATCTGATCTTAGACTGGGTATGAACTCT
260 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTCGGAATGAACTCC
* * * * * * *
5778663 GTATGCCTAAGCCAACTGATGAAATGAGTGG-GTG-GGA-GGACAGGCGGGCACTACGCCAGCCA
325 GTATGCCTAAGCCAACCGATGAAACGAGCGGCG-GAGGACGGGCGGGCGGGCACTATGCCGGCCA
* * * * *
5778725 GAGAGACGAGATACGCAAGCCGTGGATCGATAGGGTTGTAGGTGTGTTAAGGCACATCTTCATAT
389 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * ** *
5778790 TTTTGCGTGCCGATGTGATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGT
454 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
5778855 AAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCGG
519 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGG
* * * * *
5778920 GATATTTTATAATTTTTTTGGAAAGATTTTTTGCCCCAAACTTGGTAGACA-TGATCCTTGCATT
584 GATTTTTTA-AAATTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATT
*
5778984 TTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
647 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
5779049 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
712 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
5779114 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGT
777 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGT
* * * * *
5779178 ACCAGCACCCATCGTACATCATGTATGCACA-ACCCCCC-GACCCCCCGATCGCCGGAACCCTAA
841 ACCAGCACCCATCGCACATCATG--TGCACACACCCCCCGGCCCCCCCGATCGTCGTAACCCCAA
* * * * * *
5779241 TGTCGTCGGTCAGGTTCTCCGGGGATGCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCAC
1 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * * * *
5779306 CAGCACATGCCTGAGCCCAGCCTGTGTTGCCGCAACCCTCGGCCTGGTCCGATCTTAGGCTGGGA
66 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCA
* * * * *
5779371 ATAAACTTCGGATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
131 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
5779436 TACGGGCGCTCAGCCGGCTAGAGGGGTGGGATGTGCAAGCCAGGGATCGACCGGGTTCCCCTCTA
196 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCTG
** * * * * *
5779501 CGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTGGATTGGGAATGAACTCCG
261 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTCGGAATGAACTCCG
* * * *
5779566 TATGCCTAAGCCAACTGATGAAATGAGCGAGC-GA-G-CGGGC--AC---TAC-AT--CGGCCAG
326 TATGCCTAAGCCAACCGATGAAACGAGCG-GCGGAGGACGGGCGGGCGGGCACTATGCCGGCCAG
* *
5779620 AGAGACGGGATCCGCAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATT
390 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
5779685 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
455 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
5779750 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGG
520 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGG
* * *
5779815 ATTTTTTCATATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACA-TGATCCTTGTATTT
585 ATTTTTTAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTT
* * *
5779878 TTGTTGGCATGCACAAAAAAATTCAGCTAAAACCTTGAAGTGTACAGGATTTTGTGACCATTTGA
648 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
5779943 AAAAAATGTCCCCATTTAAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGC
713 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
5780008 TCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGACAAGGGGCCAATATAAGGGCCAAGTAC
778 TCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGTAC
* *
5780073 CAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCATTGTAACCCCAA
843 CAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGTAACCCCAA
* * * *
5780134 TGCCGCCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCAC
1 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* *
5780199 CAGCACATG-GTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGC
66 CAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGC
* * **
5780263 AATGAACTCCGTATGCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAATACACGAAACGAGC
130 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
5780328 GTGTGGGTGCTCAGCGGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCT
195 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCT
* * * * * *
5780393 GCGTGCTGCTGTTCCTACTGCTGTAACCCTCAATCC-ATTCTGATCTTAGACTCGGAATGAACTC
260 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGA-TCTGATCTTAGACTCGGAATGAACTC
** * * *
5780457 CGTATGCCTAAGCCAACCGACAAAACGAGC-G-GGCGGACGGGTGGGCGGGCACTATACCGGCCA
324 CGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGAGGACGGGCGGGCGGGCACTATGCCGGCCA
* *
5780520 GAGAGACGGGATGCGCAAGCCGTGGATTGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATAT
389 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
5780585 TTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGT
454 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** *
5780650 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTTGCGGTTCG
519 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-TGAAACTTTTTGCGGTTCG
* ** * * *
5780715 AGATTTTTTAAAATTTTTCTGGAA-TCTGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGAAT
583 GGATTTTTTAAAATTTTT-TGGAAGGAT-TTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTAT
* * *
5780779 TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAACATTTTGTGACCATTT
646 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
5780844 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
711 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
5780909 GCTCTTTAAGGTGTGTGAGTTCTCGAGGTTTGAAAAGGGA-CAGGGGTCCAATATAAGGGCCAAG
776 GCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAAGGGG-CCAATATAAGGGCCAAG
* *
5780973 TACCAGCACCCATCGCACATCATGTGCACACAACCCCCGGCCCCCCCGATCGTTGTAACCCCAA
840 TACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGTAACCCCAA
* *
5781037 TGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
1 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * *
5781102 CAGCACATGCCTGAGCCCAGCATGTGCTGTCACAAGCCTCGGTCTGATCCAATCTTAGACTGGCA
66 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCA
* * * *
5781167 ATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACAATCG
131 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
5781232 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTA
196 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCTG
* * * * *
5781297 CGTGCTACCGTTCCTACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTCGGAATGAACTCCG
261 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTCGGAATGAACTCCG
*
5781362 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGAACGGGCGGGCGGGCACTATGCCG
326 TATGCCTAAGCCAACCGATGAAACGAGC-GGCGGA---G-G-ACGGGCGGGCGGGCACTATGCCG
*
5781427 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTC
385 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
5781492 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
450 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
5781557 ACGTGAAGTTTCATGGCAACACGACTCGTTTACTATTTTTCATGATTTTTGAAACTTTTTGCGGT
515 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* *
5781622 TCGGGAATTTTTAAAACTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTTGAAGTGATCCTTGT
580 TCGGGATTTTTTAAAA-TTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGT
*
5781687 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCAT
644 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
5781752 TTGAAAAAAGTGTTCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCTA
709 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
5781817 ATGCTCTTGAAGAGGG-GTGAGTTCT-TAGGGTTTGATGAGAGATAAGGGGCGAATATAAGGGCC
774 ATGCTCTTTAAG-GGGTGTGAGTTCTCGA-GGTTTGAAGAGGGATAAGGGGCCAATATAAGGGCC
* ** * * *
5781880 AAGAATGAGCACCCATCGCACATC-TAGTGCGCACACCCCCCGGCTCCCCCGATCGTCGAAACCC
837 AAGTACCAGCACCCATCGCACATCAT-GTGCACACACCCCCCGGCCCCCCCGATCGTCGTAACCC
5781944 CAA
901 CAA
* ** ** *
5781947 TGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATTCTGCCCTAGCGAAGAAAAATGTGGCAC
1 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
*
5782012 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-TGG-----TC-T--A---G--
66 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCA
5782059 -T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
131 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * * * *
5782116 TGCGGGCAATCAACCGGCCAGAGGGGCGGGATGCACATGCCAGGGATCGACCGAGTCCCTCTCTG
196 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCTG
* * ** *
5782181 CGTGCTGCCGATCCTGCTGCCGCAAACCCTAG-TCTGATCCAATCTTAGACTAGGAATGAACTCC
261 CGTGCTGCCGATCCTGCTGCCGC-AACCCTCGATCCGATCTGATCTTAGACTCGGAATGAACTCC
* * *
5782245 GTATGCCTAAGCCAACCGATGAAACGAGCGG-GCATG-CGGGCGGGCGGGCACTACGCCGGCCAG
325 GTATGCCTAAGCCAACCGATGAAACGAGCGGCGGAGGACGGGCGGGCGGGCACTATGCCGGCCAG
* *
5782308 AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATT
390 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* ** *
5782373 TTTGTGTGCCAATTCCATTTTTATGGC---TAAATTCATACAATGGTCCCTTCAA-CCTTCACGT
455 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGT
* *
5782434 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
519 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGG
* *
5782499 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
584 GATTTTTTAAAA-TTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTT
* * *
5782564 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAACATTTGA
648 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
5782629 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
713 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
5782666 AGTAGAAAAA
Statistics
Matches: 3041, Mismatches: 338, Indels: 121
0.87 0.10 0.03
Matches are distributed among these distances:
873 248 0.08
874 2 0.00
876 111 0.04
878 1 0.00
882 2 0.00
883 2 0.00
884 176 0.06
885 9 0.00
886 1 0.00
888 2 0.00
891 9 0.00
892 39 0.01
893 530 0.17
894 200 0.07
895 1 0.00
896 1 0.00
897 3 0.00
898 2 0.00
899 3 0.00
900 3 0.00
901 173 0.06
902 343 0.11
903 584 0.19
904 1 0.00
905 3 0.00
906 3 0.00
908 1 0.00
909 5 0.00
910 375 0.12
911 208 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCCTCTG
CGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTCGGAATGAACTCCG
TATGCCTAAGCCAACCGATGAAACGAGCGGCGGAGGACGGGCGGGCGGGCACTATGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA
TTTTTTAAAATTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGTAACCCCAA
Found at i:5782751 original size:26 final size:26
Alignment explanation
Indices: 5782722--5782774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5782712 TCGGTCCGAT
*
5782722 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5782748 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5782774 C
1 C
5782775 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5783655 original size:26 final size:26
Alignment explanation
Indices: 5783626--5783676 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5783616 GATCCGATCA
5783626 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
5783652 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
5783677 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:5785451 original size:26 final size:26
Alignment explanation
Indices: 5785415--5785465 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5785405 GGTCCGATCT
* *
5785415 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
5785441 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
5785466 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:5787148 original size:870 final size:872
Alignment explanation
Indices: 5782745--5789005 Score: 7336
Period size: 904 Copynumber: 7.0 Consensus size: 872
5782735 TGAACTCCGT
* * * *
5782745 ATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *** ** **
5782810 AGCTGGCCAGAGGGGTGGGATGCGCAAGCTAAGGATCGGTCGGGTCCCCCT-T-CACGTGCTGTC
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCA--TGCTACC
** * * * * *
5782873 GATCCCACTGCCCCATCCCTCGATCCT-ATCCCATCTTAGACTGGGAATGAACTCTGTATGCCTA
129 GATCCTGCTGCCGCAACCCTCGAT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
5782937 AGCCAATCGATGAAATGAGCGAGCGGGCAGGCGGGCGGACACTACCCCGACCAGAGAGACGGGAT
193 AGCCAACCGA-CAAA--A-CGAGC-GG-A--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
5783002 GCGTAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTA
250 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
5783067 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
315 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
5783132 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTCCGCTTCGGGATTTTTTTAAA
380 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
** * * ** * ** ** * *
5783197 TTTTTTCTAAAGGAGTTTAGGAGCCAAACTCGGCGGACACGAGCCTTGTATTTTTTTTGGCATGC
445 TTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
5783262 ACAAAAAAATTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCC
510 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
5783327 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGG
575 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
5783392 TGTGAGTTCTCGAGGTTTGATGAGGCATAGGAGGCTAATATAAGGGCCAAGTACCAGCACCCATC
640 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * **
5783457 ACACATCATATGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCTGAATGCCGCCGGTCAGGT
705 GCACATCATGTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
5783521 TCTCCGGCGATGCTCCGATGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACATGCCTGAG
770 TCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
5783586 CCTAGCATGTGCTGCTGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCG
835 CCCAGCATGTGCTGCCGCAA-CC-C--T-C--T--G-TC-----C--GG-AT--ACT--G
*
5783646 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
1 -ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * *
5783711 CAGCCTGCCAGA-GGGCGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTGCATGCTACCG
65 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCG
* * * * ** *
5783775 ATCCTGCTGCCACAACCCTCTATCCGATCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
130 ATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
5783840 CCAACTGACGAAACGAGCGGGCGGGTGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAA
195 CCAACCGACAAAACGAGCGGAC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
5783905 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
** * * *
5783970 TTTTTATGGCTTCCAAATTTATAAAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
5784035 GACTCGTTTTCTATTTTTCATGATTTTTGAACCTTTTTGCAGTTCAAGATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
5784100 CGGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGGAAAAAA
451 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
5784165 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
5784230 AGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
5784295 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGTACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * **
5784360 CATGTGCCCACACCCCCGCGGCCCCCCGATCGTCGAAACCCCAATTCTACCGGTCAGGTTCTCCG
711 CATGTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * *
5784425 GCGATTTTCTGACGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCTAGC
776 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
5784490 ATGTGCTGTCGAAACCCTCGGCCTATTCCGATCTTAGGCTGGGAAGGAACTCCAT
841 ATGTGCTGCCGCAACCCT----C---T--G-TC-----C--GG-A--TACT---G
* * * * **
5784545 ATGCTTACACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGTTCGCT-
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** *
5784609 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGA
* * * * * * * ** *
5784674 TCCTGCTACTGTAACCCTCAGTTC-AGTTCGATCTTAGAATGGGAATGAACTGTGTATGCTTAAG
131 TCCTGCTGCCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*** * * * *
5784738 CCAACCGATGGAACGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCTG
195 CCAACCGACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
5784803 TGGAGCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
5784868 TATGGCTTTTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAGGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
5784933 CGTTTTCTATTTTTCACAATTTTCCAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * * *
5784997 AGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCCTATATTTTTTTTGGCATGCA-AAAAAAAT
455 AGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
5785061 TCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTTAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
5785126 ACTTTAATGGCTACCAGG-AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
585 ACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
5785190 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
5785254 GTGCTCACACCCCC-CGGCCCCCTCGATC-TCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
714 GTGCGCACACCCCCTCGGCCCCC-CGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* *
5785317 TGATGCTCCGATGATGGTGCCCCGAC-AGAGATAAATGCGGCACCAGCACATGCCCGAGCCCAGC
777 CGATGCTCCGATGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * **
5785381 ATTTGCAGCAACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
841 ATGTGCTGCCGCAA-CC-C--T-C--T--G-TC-----C--GG-AT--A--CTG
* * * *
5785435 TATGCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCT
1 -ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * ** ** * **
5785500 TAGCTGGCCAGAGGGGCGGGATGCACAAGCCGGCAATTAATCGGGTCCCCCTCTGTGTGCTACCG
65 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCG
* * * * *
5785565 ATCCTGTTGCTGTAACCCTCGATTTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAG
130 ATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * *
5785630 CCAACCGACGAAACGAGCGGGCGGACGGGCGATCACTACGTCGGCTAGAGAGACGGGATGCGCAA
195 CCAACCGAC-AAA--A-CGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5785695 GCCGTGGAGCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
5785760 TTTTTACGGCTTTTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
5785825 GACACGTTTTCTATTTTTCATGATTTTCGAAACATTTTGTGGTTTGGGATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * *
5785890 CGGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAA
451 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
5785955 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
5786020 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
5786085 TTTTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
5786150 CATGTGCGCAGACCCCCCTCGCCCCCCCGATCGTCGGAACCCCAATCCCGCCGATCAGGTTCTCC
711 CATGTGCGCACA-CCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
5786215 GGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATACCTGAGCCCAG
775 GGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
5786280 CATGTGCTGCCGCAACCCTCTGTCCGG-T-CTG
840 CATGTGCTGCCGCAACCCTCTGTCCGGATACTG
* * *
5786311 AT-CTTAGACTGGGAATCAACTCCGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
*
5786375 AGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGA
* * * * * *
5786440 GCCTGCTACCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATC
131 TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
5786505 CAACTGACAAAACAAGCGGACGGGCGGGCACTACGCCGGTCAGACAGACGGGAAGCGCAAGCCGT
196 CAACCGACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
5786570 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
5786635 ATGGCTTGTAAATTCATATAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
5786700 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTGTCGGAA
391 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
5786765 GGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATT
456 GGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
5786830 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTAAGACA
521 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
5786895 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTC
586 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
5786960 GAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
651 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * **
5787025 GCGTACACCCCCTCGGCCACCTCGACCGCCGGAACCCCAATACCGCGGGTCAGGTTCTTTGGCGA
716 GCGCACACCCCCTCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* * * ** ** * *
5787090 TGGTCCGGTGATGGTGACCCGGTGAAGAAAAATGCAACACCAGCAAATACCCGAGCCCAGCATGT
780 TGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
5787155 GCTGCCGCAACCCTCGGTCCAGCCCGATATTAGACTGGGAATG
845 GCTGCCGCAACCCTCTGTCC-G---G--A-T--AC------TG
* * * * * *
5787198 AACTCCGTTTGCTTAGACTGGGAATAAACTCTGTATGCCTAACTTAACCCACAAAAGGAGCGTGC
1 -A-------TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *** * * *
5787263 GGGCTCTCAGCCGGCCAGTGGGGCGGGATGCGCAAGTTAGGGACCGGCCGGGTCCCCCTCTGCGT
58 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCAT
** * * *
5787328 GCTGTCGATCCTACTGCCGCAACCCTTGAT-TCGGTCCGATCTTAGACTGGGAATGAACTCCATA
123 GCTACCGATCCTGCTGCCGCAACCCTCGATCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
5787392 TGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCTGGCACTGCACTGACCAAAGAGA
187 TGCCTAAGCCAACCGACAAAACGAGCGGACGGGCGGGCA--CT---AC-GC-C-GGCCAGAGAGA
* *
5787457 CGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
244 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
5787522 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
309 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
5787587 TCATGGCAAGACGACTCGTTTTTTTTTTTTCACGATTTTCCAATCTTTTTGCGGTTC-AGATTTT
374 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTT
* *
5787651 TTAAAATTTTTTTGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
439 TTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * **
5787716 GCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTTGTGAGAATTTGAAAAAA
504 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAA
** *
5787781 GTGTCCCCATTTCAGACACTTTAATGGCTACTAACAGCAAGCCTGTAAAATCTCAAATGCTCTTT
568 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
5787846 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGC
633 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
5787911 ACCCATCGCACATCATCTGCGCACACCCCCCCGGCCCCTTCGATCGTCGGAACCCCAATGCCGCC
698 ACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCC
* * ** * * * *
5787976 GGTCAGATTCTCCGGCGATGCTCTGGCGACGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACT
762 GGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* *
5788041 TGCCCGACCCCAGCATGTGCTACCGCAACCTGCGGTCTGATCCGCTCTTAGACTGGGAAAGAACT
827 TGCCCGAGCCCAGCATGTGCTGCCGCAACC--C--TCTG-TCCG------GA-T--------ACT
5788106 CCG
872 --G
* * * * *
5788109 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAACATCCGGGCGCT
1 -ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** * * * * **
5788174 CAGCCGACCAGAGGGGCGGAATGCACAAGCCAGTGATCGGTCGGGTCCTCCTCTACGTACTGTCG
65 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCG
* * * * * ** *
5788239 ATCTTGTTGCCGGAACCCTTGGT-TCGGTCAAATCATAGACTGGGAATGAACTCCGTATGCCTAA
130 ATCCTGCTGCCGCAACCCTCGATCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
5788303 GCCAACTGATAAAACGAGCGAGCGGACGGGCGGCCGAGCACTACGCTTGCTAGAGAGACGGGATG
194 GCCAACCGA-CAAA--A-CGAGCGGACGGGC-G--G-GCACTACGCCGGCCAGAGAGACGGGATG
* *
5788368 CGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
251 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
** * *
5788433 TGGTATTTTTATGGCTTATAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
316 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
5788498 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAT
381 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAAT
* * * * * * *
5788563 TTTTTTGGAAGGACGTTTGGCCCCAAAGTTGGTAGATGTGATACTTATATTTTTGTTGGCGTGCA
446 TTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
5788628 CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAGAAATTGTCCAC
511 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
5788693 ATTTCAGACATTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTT
576 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
5788758 GTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
641 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
5788823 CACATCATGTGTGCACACCCCCTCGGCCCCCCGACCGACGGAACCCTAATGCCACCGGTCAGGTT
706 CACATCATGTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
5788888 CT----C-A-G----G-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGC
771 CTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
5788942 CCAGCATGTGCTGCCGCAACCGT-TGGTCC-GAT-CTA
836 CCAGCATGTGCTGCCGCAACCCTCT-GTCCGGATACTG
*
5788977 AT-CTTAGACTGGGAATGAACTCCATATGC
1 ATGCTTAGACTGGGAATGAACTCCGTATGC
5789006 TTAGACTGGG
Statistics
Matches: 4684, Mismatches: 567, Indels: 252
0.85 0.10 0.05
Matches are distributed among these distances:
866 26 0.01
867 2 0.00
869 10 0.00
870 586 0.13
871 2 0.00
873 3 0.00
874 173 0.04
875 2 0.00
876 3 0.00
878 1 0.00
879 1 0.00
880 2 0.00
881 2 0.00
883 2 0.00
885 1 0.00
887 6 0.00
888 3 0.00
890 12 0.00
891 210 0.04
892 343 0.07
893 69 0.01
894 205 0.04
895 5 0.00
896 406 0.09
897 544 0.12
898 462 0.10
899 39 0.01
900 113 0.02
901 109 0.02
902 74 0.02
903 143 0.03
904 977 0.21
905 107 0.02
906 3 0.00
907 3 0.00
908 17 0.00
909 7 0.00
910 2 0.00
911 4 0.00
912 3 0.00
915 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGA
TCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCTGTCCGGATACTG
Found at i:5788116 original size:26 final size:26
Alignment explanation
Indices: 5788087--5788139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5788077 CTGATCCGCT
5788087 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
5788113 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5788139 C
1 C
5788140 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5789332 original size:26 final size:26
Alignment explanation
Indices: 5789303--5789355 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5789293 CCAGTCCGAT
*
5789303 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
5789329 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
5789355 C
1 C
5789356 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:5791101 original size:26 final size:26
Alignment explanation
Indices: 5791065--5791117 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5791055 CTGATCTAAT
5791065 CTTAGACTGGGAATGAACTGC-GTATG
1 CTTAGACTGGGAATGAACT-CTGTATG
*
5791091 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
5791117 C
1 C
5791118 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:5792330 original size:159 final size:158
Alignment explanation
Indices: 5791947--5792332 Score: 449
Period size: 158 Copynumber: 2.4 Consensus size: 158
5791937 GTGCTGCCGT
* * *
5791947 AACCCTCGGTCC-AGTCTGATCTTAGA-TCGAGAATGAACTCTGTATGCCTAAGTCAACCCATGA
1 AACCCTAGGTCCGA-TCTGATCTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* ** ** * *
5792010 AACGAGCGTGGGAGCGCTCAGCGGCCAGAGGGGCCGGATGCGCAAGCTGAGGATCGGCCGAATCC
64 AATGAGAATACGAGCGCTCAGCGGCCAGAGGGGCCGGAAGCGCAAGCTGAGGATCGACCGAATCC
* *
5792075 CCCTCTGGGTGCTACCGATCCTACTGTCGC
129 CCCTCTGCGTGCTACCAATCCTACTGTCGC
* * *
5792105 AACCCTTGGTCCGATCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAA
1 AACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * * **
5792170 TGAGAATACGAGTGCTCAGTCGGCC-GAGGGGCGGGAAGCGCAAG-TCGGGGATCGACCGGGTCC
66 TGAGAATACGAGCGCTCAG-CGGCCAGAGGGGCCGGAAGCGCAAGCT-GAGGATCGACCGAATCC
* *
5792233 CCCTCTGCGTGCTGCCAATCCTGCTG-CTGC
129 CCCTCTGCGTGCTACCAATCCTACTGTC-GC
* * * *
5792263 AACCCTCAGTTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 AACCCT-AGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
5792328 ATGAG
65 ATGAG
5792333 CGGGCAGGCG
Statistics
Matches: 194, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
157 2 0.01
158 129 0.66
159 63 0.32
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
TGAGAATACGAGCGCTCAGCGGCCAGAGGGGCCGGAAGCGCAAGCTGAGGATCGACCGAATCCCC
CTCTGCGTGCTACCAATCCTACTGTCGC
Found at i:5793006 original size:26 final size:26
Alignment explanation
Indices: 5792977--5793029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5792967 TCGGTCCGAT
*
5792977 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5793003 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5793029 C
1 C
5793030 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5793915 original size:26 final size:26
Alignment explanation
Indices: 5793879--5793930 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5793869 CGGTCTGATT
5793879 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5793905 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5793931 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:5794277 original size:886 final size:886
Alignment explanation
Indices: 5792579--5801143 Score: 10068
Period size: 901 Copynumber: 9.6 Consensus size: 886
5792569 TTTTATCTTA
* * * ** * *
5792579 GTAGACATGATCCCTGTATTTTTTTTCTCTTGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* ** *
5792644 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATATCTATTGGCAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
5792709 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
5792774 GGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATATGCGCACACCCCCCTCAGCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCC
* * * ** * * *
5792839 CCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGTCCC
259 CCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * *
5792904 GAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTGCCACCCTTGGTTC
324 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CC
* *
5792969 GGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
388 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * * *
5793034 GTCAACCCCACGAAACGAATGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCGGG
453 GTCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
5793099 GATCGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTATTGCCCTAACCCTCGATCCGGTCTGATC
517 GATCGATCGGGTCCCCCTC----TGC-GT-G---C---TG-CC-AATCCTCGGTCTGGTCTGATC
*
5793164 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGACTGGGCG-GGCGGG
568 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG---GGGGGAGGCGGG
* *
5793228 CGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGT
630 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
5793293 TTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCCTGTAAATTCATACAATGG
695 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
5793358 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
760 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
5793423 AAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCTAAACTTG
825 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* *
5793484 GTAGACGTGATGCC-TGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGT
1 GTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
5793548 ACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
65 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * **
5793613 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGTTAAGGGATAAA
130 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
5793678 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-CCCC
195 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * *
5793742 CCGATCGTCAGAACCCCAATGCCGCTGATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
260 CCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * *
5793807 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATATGCTGCCGTAACCCTCGGCCGG
325 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGG
* *
5793872 TCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
390 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * **
5793937 CTACCCACGAAACAAGCGTGCGGGCGCTTAGTCGGCCAGAGGGGCAGGATGCACAAGTTGGGGAT
455 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * *
5794002 CGATCGTGTCCCCCTCTGCGTGCTGCCAATCCTCGGTCTGGTTTGATCTTATACTGTGAATGAAC
520 CGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
5794067 TTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGTGGGTGGATGGGCAGGCACTACGGCGGCCA
585 TTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGGAGG-CGGGCGGGCACTACGCCGGCCA
* *
5794132 GAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
648 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
5794197 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGT
713 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
5794262 GAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTATGCCGTTCGG
778 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGG
** * *
5794327 GATTTTTTAAAAATTTTTTCGGAATTAGTTTTGGCCCCAAACTTC
843 GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
** * * * * **
5794372 ACAGACATGATCCTTGTATTTTTGTTGGTATGCACCAAAAAATTCAACTAAAAACTTAAAGTGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
5794437 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAACGGCTACTGGCAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * **
5794502 AACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAAAG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
5794567 GGCCAATATAAGGGCCAA-AACCAGCACCGATCTCACATCTTATGAGCACA--------CCCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * *
5794623 CAATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC-AGCGATGCTCCGATGATGGTGCCCTG
261 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCG
* * * * * * **
5794687 ATGAAGAAAAATGTGACACCAGCACATGCCTGAGTCCAGTATGTGCTGTTGCAA----C--CC--
325 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGG
* *
5794744 T-CGA---T---CT--G---G---TCCG-AT-CTTACACTGGGAATGAACTTCGTATGCCTAAGT
390 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** * * * ** *
5794792 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACAAGAAAGGTGAGATGCGTAAATCGAGGAT
455 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
5794857 C-AGCTAGGTCCCCCTCTACATGCTGCCGATCCTACTGCTGCAACCCTTAGTCTGATCCAATCTT
520 CGATC-GGGTCCCCCTCTGCGTGCTGCCAATCCT-C-G--G----TC-TGGTCTG-----ATCTT
* * * **
5794921 AGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC--GGACAGGCGGGCGGGC
570 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGAGGCGGGCGGGC
* * * * * * *
5794984 ACCACGTCGGCCAGAGACACAGGATGCGCAAGTCGTGGACCGATAGTGTGGTAGGTGGGTTTAGG
635 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
5795049 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
700 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
5795114 TAAGCCGTCCCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACT
765 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* **
5795179 TTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGCCCCAAACTTG
830 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * * * * * *
5795235 GAATACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTTGAAGCGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
5795300 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
5795365 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
5795430 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGGCCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* * * *
5795495 CCGATCG-CGTTGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCAATGCTCCGGCAATGGTGCCC
260 CCGATCGTCG--GAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
5795559 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCACGTGCGGTCGCAACCCTCGATC
323 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-GC
** *
5795624 CAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTA
387 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
5795689 AGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGTAAGTCGGG
452 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
5795754 GATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTTAGTCCGATCTAATC
517 GATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCT-C-G------------GTCTGGTCTGATC
* * * ** * *
5795819 TTAGACTAGGACTGAACTTCCTATGCCTAAGCCAACCGAAAAAACGAGCGGGCGGA--AGGGCGG
568 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGAGGCGGGCGG
* * * *
5795882 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATAGATCGATAGGGTGGTTGGTGGGTTTA
633 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
5795947 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCCTT-TAAATTCATACAATGATC
698 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAATGGTC
*
5796011 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCATGATTTTTGAA
762 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * *
5796076 ACTTTTTGCGGTTAGAGATTTTGTAAAATTTTTTAGGAAGGAGTTTTTGCCCCAAACTTG
827 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * * *
5796136 GTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTTGAAGCGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
5796201 CAAGATTTTGTGACCATTTAAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGGCAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
5796266 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
5796331 GGCCAATATAAGGGCCAAGTACCATCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *** *
5796396 CGATCGTAGGAACCCTAAT-CCG-TCGGTCAAGTTCTCCGGTAATGCTCCGACGATGGTGCCCTG
261 CGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * * * *
5796459 GCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCACGTGCTGTCGCAACCCTTGTTCTG
325 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-GCCG
5796524 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
389 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
5796589 TCAACCCACGAAATGAGCGTGTGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGA
454 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
5796654 TCGACCGGGTACCCCTCTACGTGCTGCCGATCCTGCTCTCACAACCTTCAGTCTAGTCTGATCTT
519 TCGATCGGGT--CCC-C--C-T-CTG-CG-TGCTG--C-CA-ATCC-TCGGTCTGGTCTGATCTT
* * *
5796719 AGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGGGGCAGGCGGGCAGG
570 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGG-AGGCGGGCGGG
* * * *
5796784 CACTACGTCGGCCAGAGAGATGGGATGCGGAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAG
634 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
5796849 GTACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCC
699 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
5796914 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
764 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
5796979 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCC-AA----
829 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * * *
5797032 --AGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
5797095 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
5797160 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGG--A-GG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * ** *
5797222 GGCCACTGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTAG-CCCTC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* *
5797286 CGATCGACGAAACCCCAATGCCG-TCGGTCAGGTTCTCCGACGA---T-----GA---TGCCCCG
261 CGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * ** * * *
5797339 ACGAAGTAAAATGTGGCACCAGCACATTACCGAGCCCAGCATGTGCTGCCGTAACCGTCGGTCCT
325 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CCG
* * * *
5797404 GTTCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCCGTCTGCCTAAG
389 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
5797469 TCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
454 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * * *
5797534 TCGGCCGGGTCCCCTTCTACGTGCTGTCGATCCTACTGCCACAACTTTCAGTCTGGTGC-AATCT
519 TCGATCGGGTCCCC--CT-C-TGC-GT-G------CTGCCA-ATC-CTCGGTCTGGT-CTGATCT
* * *
5797598 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGC-----G-GGCAGGCGGG
569 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGAGGCGGGCGGG
*
5797657 CACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
634 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
5797722 GCACATTTTCATATTTCTACGTGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
699 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
5797787 TTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTAAAAC
764 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
5797852 TTTTTACGGTTCGGGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTGGACCCAAACTTG
829 TTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * * *
5797910 GTAGACGTGAT-CTTGTATTTTTTTTGGCAGGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
5797974 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
5798039 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
5798104 GGCCAATATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGTGCGCACAGCCCACCC-CCCAG
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCC--
* * * * * *
5798168 CCCCTCGATCGCCGAAACCCCAATGCCGTTGGTCAGGTTCTCTGATGATGCTCCGACGATGCTGC
257 CCCC-CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * **
5798233 CCCGACGAAGAAAAATGGGGCAACAGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCCT---
321 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
5798295 -CGGTCCGGTC----AC------T----T-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
386 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
5798344 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGA
451 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * * * ** *
5798409 GCATCGGCCTGGTCCCCCTCTGCATGCTGCCGTTCTTGCTGCCGCAACCCTTGGTCCAGTCTAAT
516 GGATCGATCGGGT--CCC-C--C-T-CTG-CG----TGCTG-C-CAATCCTCGGTCTGGTCTGAT
* * * *
5798474 CTTAGCCTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGGTGGGCGGGCGGA
567 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGG-AGGCGGG
* * *
5798539 CGGGCTCTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
630 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
5798604 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCA
695 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
5798669 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
760 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
5798734 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGCTTTGGCCCCAAACTTG
825 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
* * ** *
5798796 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACAAGAAATGTA
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * * *
5798861 CAAGATTTTTTGACCATTTGAAAAAAGTATCCTCATTCCAAACACTTTCATGGCTACTGGCAGCA
66 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
5798926 AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT-TCGA-GTTTGATGA-GGATAGGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
5798987 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACACCCCCCGGCCCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
*
5799052 CGATCGTCGGAACCCCAATGTCG-TCGGTCAGGTTCTCCGACGA---T--G-C-----T---CCG
261 CGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * *
5799102 ACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCA
325 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGCCG
* * * * *
5799167 GTTCGATCTTACACTTGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCTGTATGCCTAAG
389 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
5799232 TCAACCAACGAAACAAGCTTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGA
454 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
5799297 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCATGCTGCAGCAACCCTCGATCTGGTCCGATCTT
519 TCGATCGGGTCCCCCTCTGCGTGCTGCC-A--A---T--------CCTCGGTCTGGTCTGATCTT
*
5799362 AGACTGGGAATGAAC-TCTGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCAGGCGGGCG
570 AGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGG-AGGCGGGCG
* * * *
5799426 GGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGCGTGGTAGGTGGGTTT
632 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
5799491 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTC
697 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
5799556 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTCTGAA
762 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * *
5799621 ACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGTAGGAG-TTTTGACCCCAAACTTG
827 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTG-CCCCAAACTTG
* **
5799681 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAACGCTTC-AAGTGT
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGT
*
5799745 ACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
65 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * *
5799810 AAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGCTCGCAAGGTTTGATGGGGGATAGG
130 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
5799875 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCC
195 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCC
* * ** * *
5799940 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGTTCCGACGATGGTGCCTC
259 CCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * * * **
5800005 GATGAAGAAAAATACGACACCAGCACATGCGCGAGCCCAACATGTGCTGCTGCAACCCTTGGTTT
324 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CC
*
5800070 GGTCCGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
388 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
5800135 GTCAACGCATGAAACGAGCATGCGCGCGCTCAGCCGGCTAGAGGGACAGGATGCGCAAGCCGGGG
453 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
** * * * * * * *
5800200 ATCGCCCAGGTCCTCTTCTACGTGCTACCGATCCTACTATCGTATCCCTTGGTCCGATCTGATCT
518 ATCGATCGGGTCCCCCTCTGCGTGCT---G---C--C-A----AT-CCTCGGTCTGGTCTGATCT
* * * * * * * *
5800265 TAGACTAGGAATGAACTCCGTATGACTAAGCTAACCGACGAAAGGAGCGGGCGGGTGGGCAGGCA
569 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGG-AGGCGGGCG
* * * *
5800330 GGCACAATGCCGGCCAGAGAGACGAGATGCGCAAGCCCGTGGATCGATAGGGTGGTAGGTGGTTT
632 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTT
*
5800395 TAGGGCGCATCTTCATATTTCTGCGTGCCAAT-CCATTTTTATGGGCTTGTAAATTCATACAATG
696 TA-GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATG
* *
5800459 GTCCCTTAAGCCTTCACCGTGAAGTTTCACCGGCAAGACGACTCGTTTTCTATGTTTT-ACGATT
759 GTCCCTTAAGCCTTCA-CGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTAT-TTTTCATGATT
* * *
5800523 TTTGAAACTTTTTGGCGGTTCGAGATTTTTTTAAAATTTTTTTCGAAAGGGGAGTTTTTGGCCCA
821 TTTGAAACTTTTT-GCGGTTCGGGA-TTTTTTAAAA-TTTTTTCGGAA--GGAGTTTTTGCCCCA
5800588 AACTTG
881 AACTTG
* * * * * *
5800594 GTACA-TTGATCCTTGTATTTTT-TTGGCTTGCAAACAAAAACATTAAGCT--AAAC-CGAAGTC
1 GTAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
5800654 TACATGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
64 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
5800719 TAAACCTGTAAAATCTTAGATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
129 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
5800784 AGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACACCCCCTGGCCCC
194 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** * * * *
5800849 CCCGATCACCGAAACCCCAATTCCG-TCGGTCAGGTTCTTCGGCGATGCTCC-AGCGATGGTGCC
259 CCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCC
** *** *
5800912 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCGTAGCATGTGCTGTTACAACCCTCGAT
322 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-G
* *
5800977 CCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCT
386 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
5801042 AAATCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGCCAAAGGGGCGAGATGTGCAAGCCGG
451 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * *
5801107 GGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCT
516 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCT
5801144 GCTACCGCAA
Statistics
Matches: 6620, Mismatches: 789, Indels: 512
0.84 0.10 0.06
Matches are distributed among these distances:
854 2 0.00
855 103 0.02
856 3 0.00
857 5 0.00
859 1 0.00
860 1 0.00
863 212 0.03
864 47 0.01
865 261 0.04
866 3 0.00
867 1 0.00
868 2 0.00
869 46 0.01
870 7 0.00
871 3 0.00
872 5 0.00
873 250 0.04
874 103 0.02
875 1 0.00
876 6 0.00
877 9 0.00
878 171 0.03
879 211 0.03
880 369 0.06
881 14 0.00
882 57 0.01
883 70 0.01
884 26 0.00
885 549 0.08
886 545 0.08
887 208 0.03
888 234 0.04
889 64 0.01
890 70 0.01
891 74 0.01
892 2 0.00
893 8 0.00
894 172 0.03
895 9 0.00
896 6 0.00
897 1 0.00
898 339 0.05
899 12 0.00
900 464 0.07
901 550 0.08
902 112 0.02
903 5 0.00
904 287 0.04
905 265 0.04
906 69 0.01
907 16 0.00
908 40 0.01
909 259 0.04
910 190 0.03
911 24 0.00
912 19 0.00
913 32 0.00
914 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GATCGGGTCCCCCTCTGCGTGCTGCCAATCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGAGGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTG
Found at i:5795662 original size:26 final size:26
Alignment explanation
Indices: 5795633--5795685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5795623 CCAATCCGAT
5795633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5795659 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5795685 C
1 C
5795686 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5796560 original size:26 final size:26
Alignment explanation
Indices: 5796531--5796583 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5796521 CTGGTCCGAT
5796531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5796557 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5796583 C
1 C
5796584 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5796788 original size:901 final size:901
Alignment explanation
Indices: 5794759--5801222 Score: 8325
Period size: 885 Copynumber: 7.2 Consensus size: 901
5794749 CTGGTCCGAT
* * *
5794759 CTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * ** * ** *
5794824 CGACAAGAAAGGTGAGATGCGTAAATCGAGGATC-AGCTAGGTCCCCCTCTACATGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATC
* ** * *
5794888 CTACTGCTGCAACCCTTAGTCTGATCCAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCA
130 CTGCTGCCACAA-CCTTAGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
5794953 ACCGACAAAACGAGC---GGACAGGCGGGCGGGCACCACGTCGGCCAGAGACACAGGATGCGCAA
194 ACCGACGAAACGAGCGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
5795015 GTCGTGGACCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
5795080 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCCCGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
5795145 GACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
5795210 CGGAAGGAG-TTTTGCCCCAAACTTGGAATACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
5795274 AACTTCAGCTAAAAATTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
5795339 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
5795404 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
5795469 CATGTGCGCACACCCCCCCGGCCCCCCCGATCG-CGTTGAACCCCAATGCCG-CTGGTCAGGTTC
714 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCG--GAACCCCAATGCCGTC-GGTCAGGTTC
** * * *
5795532 TCCGGCAATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
775 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * **
5795597 CAGCACGTGCGGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
5795659 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
5795724 CGGCCAAAGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
5795789 TGCTGCCACAACCCTTAGTCCGATCTAATCTTAGACTAGGACTGAACTTCC-TATGCCTAAGCCA
131 TGCTGCCACAA-CCTTAGTCTGATCTAATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCA
** * * *
5795853 ACCGAAAAAACGAGCGGGCGG-A--AGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
5795915 GCCATAGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
5795980 TTTTTATGGCCTT-TAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 TTTTTATGG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5796044 CGACTCGTTTTGTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGAGATTTTGTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
5796109 TAGGAAGGAGTTTTTGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
5796174 AAAATTCAGCTAAAAATTTGAAGCGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCTATTT
518 AAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
5796239 CAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
5796304 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGTACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
5796369 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTAGGAACCCTAAT-CCGTCGGTCAAGTTCTCC
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
5796433 GGTAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
5796498 CACGTGCTGTCGCAACCCTTGTTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 CATGTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
5796557 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
5796622 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGGTACCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
*
5796687 TGCT-CTCACAACCTTCAGTCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTGC-CACAACCTT-AGTCTGA-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
5796750 AATCGACGAAACGAGCGGGGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGATGGGATGCGGA
193 AACCGACGAAACGAGCGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
5796815 AGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGTACATCTTTATATTTTTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
5796880 ATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
5796945 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
5797010 TGGGAAGGAGTTTTGGCCCC-AA------AGATGTGATCCTTGTATTTTTTTTGGCATGCATAAA
453 TCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
5797068 AAAATTCAGCTAAAAACTCGAA-CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAATTCAGCTAAAAACTTGAAGC-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5797132 TCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
5797197 AGTTCTCGAGGTTTGATGAGGG--A-GGGGCCACTGTAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
5797259 ATCATGTGTGCACACCCCCTAG-CCCTCCGATCGACGAAACCCCAATGCCGTCGGTCA-------
712 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * **
5797316 -GGT--T-CTCCGACGATGATGCCCCGACGAAGTAAAATGTGGCACCAGCACATTACCGAGCCCA
777 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * *
5797377 GCATGTGCTGCCGTAACCGTCGGTCCTGTTCGATCATAGACTGGGAATGAACTCCGTATG
842 GCATGTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
5797437 CTTAGACTGGGAATGGACTCCGTCTGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
5797502 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
5797567 TACTGCCACAACTTTCAGTCTGGTGC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCTT-AGTCTGAT-CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
5797631 ACAGACGAAACGAGC---GGGCA----GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
5797689 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACGTGCAAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
5797754 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
5797819 GACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT-TT
* * * * *
5797884 T-GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGAT-CTTGTATTTTTTTTGGCAGGCAAAAA
453 TCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
5797947 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
5798012 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
5798077 GTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATTGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
5798142 TCATGTGCGCACAGCCCACCC-CCCAGCCCCTCGATCGCCGAAACCCCAATGCCGTTGGTCAGGT
713 TCATGTGCGCACA-CCC-CCCGGCC--CCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * *
5798206 TCTCTGATGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGGGGCAACAGCACATGCCTGAG
773 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
5798271 CCCAGCATGTGCTATCGCAA-CC-C--T-CGGTCCGGTC----AC------T----T-CGTATG
838 CCCAGCATGTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
5798315 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
5798380 CGGCCAGAGGGGCGGGATGCGCAAGCTGAGCATCGGCCTGGTCCCCCTCTGCATGCTGCCGTTCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
5798445 TGCTGCCGCAACCCTTGGTC-CAGTCTAATCTTAGCCTGGGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCACAA-CCTTAGTCTGA-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
5798509 ACTGACGAAACGAGCGGGTGGGCGGGCGGACGGGCTCTACGCTGGCCAGAGAGACGAGATGCGCA
194 ACCGACGAAACGAGCGGG-GGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
5798574 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
**
5798639 ATTTTTATGGCTTGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
5798704 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
5798769 TCGGAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* ** ** * * * *
5798834 AAATTTCAGCTAAAAACAAGAAATGTACAAGATTTTTTGACCATTTGAAAAAAGTATCCTCATTC
518 AAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
5798899 CAAACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
5798963 GTT-TCGA-GTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
5799025 TCCTGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT---GTC-GTC-GG---TCA
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
5799082 GGT--T-CTCCGACGA---TGCTCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAG
778 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
5799141 CATGTGCTGTCGTAACCCTCAG-TCCAGTTCGATCTTACACTTGGAATGAACTCCGTATG
843 CATGTGCTGTCGCAACCCTC-GTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
5799200 CTTAGACTGGCAATGAACTCTGTATGCCTAAGTCAACCAACGAAACAAGCTTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
5799265 CGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
5799330 TGCTG-CAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCA-CAACCTTAG-TCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
5799394 ACCGACGAAACGAGGGGGCGGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCGGG-GGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
5799459 AGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
5799524 ATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
5799589 CGACTCGTTTTCTATTTTTTATGATTTCTGAAACTTTTTACGGTTCTG-GATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTT
* *
5799653 TTCGGTAGGAG-TTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
452 TTCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** * * *
5799717 AAAAAATTCAGCTAAACGCTTCAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
5799782 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
5799847 GAGCTCGCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
5799912 CATCATGTGTGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTC
711 CATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
5799977 TCCGGTGATGTTCCGACGATGGTGCCTCGATGAAGAAAAATACGACACCAGCACATGCGCGAGCC
775 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
5800042 CAACATGTGCTG-CTGCAACCCTTGGTT-TGGTCCGATCTTAGACTGGTAATGAACTCCGTATG
840 CAGCATGTGCTGTC-GCAACCC-TCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
5800104 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCATGCGCGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
5800169 CGGCTAGAGGGACAGGATGCGCAAGCCGGGGATCGCCCAGGTCCTCTTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** ** * * * * * * *
5800234 TACTATCGTATCCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGACTAAGCTAA
131 TGCTGCCACA-ACCTTAGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * *
5800299 CCGACGAAAGGAGCGGGCGGGTGGGCAGGCAGGCACAATGCCGGCCAGAGAGACGAGATGCGCAA
195 CCGACGAAACGAGCGGG-GGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5800364 GCCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGGCGCATCTTCATATTTCTGCGTGCCAAT-C
259 G-CCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCGTGCCAATGC
*
5800428 CATTTTTATGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCGTGAAGTTTCACCGGC
322 CATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCA-TGGC
* *
5800493 AAGACGACTCGTTTTCTATGTTTT-ACGATTTTTGAAACTTTTTGGCGGTTCGAGATTTTTTTAA
384 AAGACGACTCGTTTTCTAT-TTTTCATGATTTTTGAAACTTTTT-ACGGTTCGAGA-TTTTTTAA
* * * *
5800557 AATTTTTTTCGAAAGGGGAGTTTTTGGCCCAAACTTGGTACA-TTGATCCTTGTATTTTT-TTGG
446 AA-TTTTTTCGGAA--GGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * * *
5800620 CTTGCAAACAAAAACATTAAGCT--AAAC-CGAAGTC-TACATGATTTTGTGACCATTTTAAAAA
508 CATGC--ACAAAAAAATTCAGCTAAAAACTTGAAG-CGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
5800681 AGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGTAAACCTGTAAAATCTTAGATGCTCTT
570 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
5800746 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATGAGGGCCAAGTACCAG
635 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * ** * *
5800811 CACCCATCGTACATCATGTGCACACACCCCCTGGCCCCCCCGATCACCGAAACCCCAATTCCGTC
700 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
* *
5800876 GGTCAGGTTCTTCGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
765 GGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
** ** *
5800940 ATGCCCGAGCGTAGCATGTGCTGTTACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC
829 ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAAC
*
5801005 TCTGTATG
894 TCCGTATG
* * *
5801013 CTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
5801078 CGGCCAAAGGGGCGAGATGTGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * **
5801143 TGCTACCGCAACCCTCGGTCTGATCCT-ATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAA-CCTTAGTCTGAT-CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
5801206 ACC-ACCGAAACGAGCGG
194 ACCGA-CGAAACGAGCGG
5801223 TTGGGCACTA
Statistics
Matches: 4876, Mismatches: 552, Indels: 264
0.86 0.10 0.05
Matches are distributed among these distances:
865 55 0.01
866 2 0.00
867 1 0.00
868 9 0.00
869 2 0.00
870 7 0.00
871 4 0.00
873 230 0.05
874 9 0.00
875 3 0.00
876 2 0.00
877 6 0.00
878 184 0.04
879 189 0.04
880 297 0.06
881 7 0.00
882 57 0.01
883 62 0.01
884 22 0.00
885 569 0.12
886 275 0.06
887 163 0.03
888 8 0.00
889 64 0.01
890 47 0.01
891 64 0.01
892 1 0.00
893 10 0.00
894 175 0.04
895 4 0.00
896 1 0.00
897 11 0.00
898 375 0.08
899 11 0.00
900 414 0.08
901 491 0.10
902 1 0.00
903 2 0.00
904 291 0.06
905 45 0.01
906 63 0.01
907 13 0.00
908 82 0.02
909 289 0.06
910 187 0.04
911 19 0.00
912 16 0.00
913 32 0.01
914 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCACAACCTTAGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:5800107 original size:26 final size:26
Alignment explanation
Indices: 5800078--5800130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5800068 TTGGTCCGAT
*
5800078 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5800104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5800130 C
1 C
5800131 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5801038 original size:26 final size:26
Alignment explanation
Indices: 5800987--5801039 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5800977 CCGGTCCGAT
**
5800987 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5801013 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5801039 C
1 C
5801040 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5803457 original size:26 final size:26
Alignment explanation
Indices: 5803421--5803473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5803411 CCAGTGCGAT
*
5803421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
5803447 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
5803473 C
1 C
5803474 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:5804353 original size:26 final size:26
Alignment explanation
Indices: 5804324--5804375 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5804314 CCGGTCCGAT
5804324 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
5804350 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
5804376 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:5804906 original size:895 final size:891
Alignment explanation
Indices: 5801267--5806091 Score: 6273
Period size: 903 Copynumber: 5.4 Consensus size: 891
5801257 GTTGTACAAG
5801267 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
1 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
5801332 ACAC-TTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATCCTCTTTAAGGGGGTTTGAGTT
66 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * **
5801396 CTCAAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTAATAGCACGCATCGCACATCA
131 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCA
** * * ** * *
5801461 TGTGCAAACA-CCCCCCAGCCCCGCCGATTGTCAGAACGCTAATGCCGTCGGTCAGGTTCTCCGG
195 TGTGCGCACACCCCCCCGGCCCCCCCGATCATC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * ** *
5801525 TGATGCTCCGACGATGGTGCCCTGAGGAAGAAAAATGCGGCACCAGCACATGTCTAAGCCCAACA
259 TGATGCTCCGACGATGGTGCCC-CAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * ** *
5801590 TGTACTGTCGTAAACCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTTGTTTGCTTAGACT
323 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
5801655 GGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCAAA
388 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGA
* * * * * * * * * *
5801720 GGGGCGGGATGCACGAGTCGGGGATCGCTCGTGTCGCCCTCTGCATGTTGCCAAT-CTAACTACT
453 GGGGCGAGATGCGC-AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTGCT
* * * * * *
5801784 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGATGA
516 GTAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
5801849 AACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCG
581 AACGA----GCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
5801914 ATAGGGTGGTAGGTGGGTTTAGGGATAT-TTCATATTTCTACATGCCAATGCCATTTTTATGGCT
642 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* *
5801978 TGTAAATTCATACAATGGTCCCTTAAGGCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
707 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
* *
5802043 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAGTTTTTCGGAAGGA-TT
772 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTT
* * *
5802107 TCTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGAACAAAAAA
836 T-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
5802164 ATTCAGCTAAAAATTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTATCCCCATTTTA
1 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * * *
5802229 GATGCTTTAATGGCCATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGAGGGTGTGAG
65 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGTGAG
*
5802293 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACAT
129 TTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACAT
* *
5802358 CATGTGCG-A-ACACCCCCAGCCCCCCCGATCATCGAACCCCAATGCCGTCGGTCAGGTTCTCCG
193 CATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* *
5802421 GTGATGCTCCGACGATGATGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGC
258 GTGATGCTCCGACGATGGTGCCCC-AGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * *** * *
5802486 ATGTGCTATCATGAA-TCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTTTGCTTAGA
322 ATGTGCTGCCGT-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
**
5802550 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAATGTGCGGGTGCTCAACCGGCCA
386 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCA
* * * *
5802615 GAGGGGCGAGATGTACG-AGTCGGGGATCGGTCGAGT-CCCCTCTGCATGTTGCCAATCCTGCTG
451 GAGGGGCGAGATG--CGCAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* *
5802678 CCT-CAACCCTCGATCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
514 -CTGTAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
5802741 ATGAAACGAGCGGGCGGGCGGACGGGTGTGCTCTACGTCGGCCAGAGAGACAGGATGCGCAAGCC
577 ACGAAACGAGCGGGC--G-GG-C--G-G-GCACTACATCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
5802806 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGGATAT-TTCATATTTCTGCATGCCAATGCCATTT
634 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
5802870 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
699 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * * * *
5802935 TCGTTTTCTATTTTTCATGATTTTTGAAACGTTTTGCGGTTCAGGATTTTTTAAAAGTTTTTCAG
764 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGG
** *
5803000 AAGGA-TTTTCGATCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
828 AAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
5803064 ATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
1 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
5803129 GACGCTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
65 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * **
5803194 TCTCGAGGTTTGATGAGGGACAGGTGGCCAATATAAGGGCCAAGTACCAACACGCATCATACATC
130 TCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATC
* * * *
5803259 A-GAGCGCACAACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGTCGATCAGGTTCTCT
194 ATGTGCGCAC-ACCCCCCCGGCCCCCCCGATCATC-GAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * *
5803323 GGCGATGCTCC-AGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCA
257 GGTGATGCTCCGA-CGATGGTGCCCC-AGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
5803387 GCATGTGCTGCCATAACCCTCGGTCCAGTGCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
320 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
5803452 ACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGAGCTCAACTGGCC
385 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCC
* * * *** * *
5803517 AGAGGGGATG-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCCATGTGCTGCTGATCTTGCT
450 AGAGGGG-CGAGATGCGC-AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
5803581 GCTGTAACCCTTGGTCCGGTCTGATCTT-GAAATGGGAATGAACTCCGTATGCCTAAGCCAACCG
513 GCTGTAACCCTTGATCCGATCTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
5803645 ACGAAACGAGCGGGCGGGCGGGCGTGCGGGTACTACGCTGGCCAGAGAGACGGGATGCGTAAGCC
577 ACGAAACGAGCGGGCGGGCGGGC--AC---TAC-A-TC-GGCCAGAGAGACGGGATGCGCAAGCC
*
5803710 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
634 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
5803775 TTATGGCTTCTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
699 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* ** * ** *
5803840 TTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTTAGGATTTTTCAAAATTTTTTCGG
764 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGG
* *
5803905 AAGGGGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAA
828 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
5803969 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
1 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
5804034 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTT
66 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
5804099 CTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCAC-CATCGCACATCA
131 CTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCA
* * *
5804163 TGTGCGCACACCCCCCCGGCCCACCCGATCATCGAAACCCCAATGCCGTCGGTTAGGTTCTTCGG
195 TGTGCGCACACCCCCCCGGCCCCCCCGATCATCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGG
* *
5804228 TGATGCTCCGACGATGGTGTCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCA
259 TGATGCTCCGACGATGGTGCCCCAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
5804293 TGTGCTGCCGCAACCCTCAGACCGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACT
323 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * **
5804358 GGGAATGAACTTCGTATGACTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGTCGGCCAGA
388 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGA
* * *
5804423 GGGGCGAGATGCGCACGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGGTCCTCCTGCCG
453 GGGGCGAGATGCGCA-GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTG
* * *
5804488 TAATCCTTGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
517 TAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
5804553 ACGAGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGCATGCGCAAGCCGTGGATCGATAGG
582 ACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
5804618 GTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
647 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
5804683 ATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
712 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
* *
5804748 TTCACGATTTTTGAAACTTTTTACGGTTCGGGAGTTTTTAAAATCTTTTCGGAAAGAGTTTTGGC
777 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGC
* * *
5804813 CCCAAACTTGGTAGACGTGGTCCTTGTGTTTTTGTTGGCATGTACAAAAAA
841 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
5804864 ACTCAGCTAAAAACTCGAAGTGTACAAGATATTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
1 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*** *
5804929 ACACTTTAATGGCTACAAACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTT
66 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
5804994 CTCAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
131 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCA
** *
5805059 TGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGAACCCCAATGCTGTCGGTCAGGTTCTCC---
195 TGTGCGCACACCCCCCCGGCCCCCCCGATCATCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
** *
5805121 ---G----G-CGATGGTGCCCCAGTGAAGAAAAATATGGCACCAGCACATACCCGAGCCCAGCAT
260 GATGCTCCGACGATGGTGCCCCAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
5805178 GTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAATTCTGTATGCTTAGAATG
324 GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
5805243 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAGCGAGCGTACGGGTGCTCAATCAGCCAGAG
389 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAG
* * * * ** * * * **
5805308 GGGCGGGATGCCCAAGCCGAGGATCAATCGGGGCCCCCTCTACGTGCTGCCGATCCTGCTACTAC
454 GGGCGAGATGCGC-AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGT
* ** ** * * * *
5805373 AACCCTTG-GCCTGGCCAAATCTTATACTGGGAATGAACTACTTATGCCTAAGCCAACTGACGAA
518 AACCCTTGATCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * *** * * *
5805437 ACGAATGGGCAGGCGAGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCTGTAGATCGATAGG
582 ACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* **
5805502 G-GGTAGGTCGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
647 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* * *
5805566 GTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
712 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
* * * * * * **
5805631 TTCAGGATTTTCGAAACTTGTTCCGGTTCGAGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGC
777 TTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTCGGAAGGAGTTTTGGC
* ** ** * *
5805696 CCTAAACTTGGTAGACACGATCCCCGTATTTTTATTGGCATGCAAAAAAAA
841 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
5805747 ATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
1 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
5805812 GCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
66 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
5805877 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
131 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCA
* * **
5805942 TGCGCGCACA--CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGG
195 TGTGCGCACACCCCCCCGGCCCCCCCGATCATC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * ** *
5806005 TGATGCTCTGGCGATAGTGCCCCGGTGAAGAAAAATATGGCACCAGTACATGCCCGAGCCCAGCA
259 TGATGCTCCGACGATGGTGCCCCAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
5806070 TGTGCTGCCGTAACCCTCGGTC
323 TGTGCTGCCGTAACCCTCGGTC
5806092 TGATCTAATC
Statistics
Matches: 3499, Mismatches: 357, Indels: 148
0.87 0.09 0.04
Matches are distributed among these distances:
881 20 0.01
882 26 0.01
883 402 0.11
884 321 0.09
885 2 0.00
888 1 0.00
889 1 0.00
892 7 0.00
893 69 0.02
894 2 0.00
895 454 0.13
896 136 0.04
897 268 0.08
898 66 0.02
899 123 0.04
900 458 0.13
901 11 0.00
902 30 0.01
903 575 0.16
904 296 0.08
905 227 0.06
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCATCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTG
ATGCTCCGACGATGGTGCCCCAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGG
GCGAGATGCGCAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAAC
CCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
Found at i:5805237 original size:26 final size:26
Alignment explanation
Indices: 5805208--5805260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5805198 TCGGTCTGAT
* *
5805208 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
5805234 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
5805260 C
1 C
5805261 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:5806537 original size:26 final size:26
Alignment explanation
Indices: 5806486--5806537 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
5806476 CTGTTTGATA
* *
5806486 TTAGACTGGGAATAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGCATGC
*
5806512 TTAGATTGGGAATGAAA-TCCGCATGC
1 TTAGACTGGGAAT-AAACTCCGCATGC
5806538 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGCATGC
Found at i:5807423 original size:26 final size:26
Alignment explanation
Indices: 5807387--5807437 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5807377 CCAGTCCAAT
*
5807387 CTTAGACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
5807413 CTTACACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
5807438 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:5807839 original size:903 final size:900
Alignment explanation
Indices: 5806103--5810932 Score: 6347
Period size: 902 Copynumber: 5.4 Consensus size: 900
5806093 GATCTAATCT
* * * *
5806103 TAGATGTGATCCTTGTATATTTTTTAGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
5806168 AAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
5806233 ACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
5806298 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGTGCACACCCCCCG-GCCCCCG
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCG
* * * * *
5806362 ATCG-TCGAAACCCTAATGCTGCCGGTCAGGTTCT-C--C---G----GCGATGGTTCCCCGACA
261 ATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACG
* ** * *
5806416 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTTGCAACCCTCGGTCCTGTT
325 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
** * * * * * *
5806481 TGATATTAGACTGGGAATAAACTCTGTATGCTTAGATTGGGAATGAAATCCGCATGCCTAAGTCA
390 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
5806546 ACACAC-AGAATGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATC
455 ACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** ** * * * ** * * *
5806610 GACCAAGTCCCCCTCTACATGCTGCTGATCCTACTGCTGTAACCCTCGATTCGATCTGATCTTAG
519 GGTCGGGTCACCCTCTACATGCTGCTGATCCTGCTACTACAACCCTCGGTCCGGTCTGATCTTAG
* * * * *
5806675 ATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGACGGGCGA-CGGGCGAGC
584 ACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGACGAGCGAGCGGGCGGGC
* * * * *
5806739 ACTACGCCAGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTACGTGGGTTTGGG
648 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
5806804 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCT
713 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * **
5806869 TAAGCCTTCACGTGAGGTTTCCTGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
778 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
*** *
5806934 TTTTGTAGTTCGGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGG
843 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
5806992 TAGATGTGATCCTTGTATTTTATTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
1 TAGACGTGATCCTTGTATTTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
5807057 CAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCA-TTCGGACACTTTAATGGCTACTGGCAGCA
65 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
5807121 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGG
130 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
5807186 GGACAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCTCCC
195 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCC
* * *** * *
5807251 CGATTGCTGGAACCCTAATGTTACCGGTCAGGTTCTCCGACGATGCTCCTGTGATGGTGCCCCGG
259 CGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGA
* * *
5807316 CAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAG
323 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* *
5807381 TCCAATCTTAGACTGGGAATGAACTCCGTATACTTACACTGGGAATGAACTCCGTATGCCTAAGT
388 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
5807446 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGGCGAGATGTGCAAGCCGGGGA
453 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGA
** *
5807511 TCGGTCGGGTCACCCTCTGTATGCTGCTGATCTTGCTACTACAACCCTCGGTCCGGTCTGATCTT
517 TCGGTCGGGTCACCCTCTACATGCTGCTGATCCTGCTACTACAACCCTCGGTCCGGTCTGATCTT
** * * *
5807576 AGACTGGGAATGAACTCCGTAAACCTAAGCCGATCGACGAAACGAACGGACGAGCGAGCGGGCAG
582 AGACTGGGAATGAACTCCGTATGCCTAAGCC-AACGACGAAACGAGCGGACGAGCGAGCGGGCGG
* * * * * **
5807641 GTACTACGCCAGCCAGAGAGATGGGATGCACAAGTCGTGGATCGATATAGTGGTAGGTGGGTTTA
646 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
5807706 GGCAGATCTTTATATTTCTATGTG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
711 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
5807770 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
776 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* **
5807835 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
841 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
5807895 TAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
5807960 AAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGG-TACTGGCAGCA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCA
* * *
5808024 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGATAGAG
130 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
5808089 GGCAAAAATAAGGACCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCTCGGCCCCCC
195 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG-CCCCC
** * * *
5808154 CCGATCGCCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCG
258 CCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-CGCGATGGTGCCCCG
* * * * **
5808219 ACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACGTGTGCTGCCGTAACCCTCGGTCTG
322 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
*
5808284 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
387 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
5808349 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACTAGAGGGGCGGGATGCGAAAGCTGAGGA
452 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * ** * * *
5808414 TCGGTC-GGTCCCCCTCTGCGTGCTGCCAATCCTTCTACCACAACCCTCAGTCCGGTCTGATCTT
517 TCGGTCGGGTCACCCTCTACATGCTGCTGATCCTGCTACTACAACCCTCGGTCCGGTCTGATCTT
* *
5808478 AGACTGGGAATGAACTCTGTATGCCTAAGGCAACCGACGAAACGA---G-C--G-G-GCGGGCGG
582 AGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGACGAGCGAGCGGGCGG
* * *
5808535 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAAGGGTGGCAGGTGGGTTTA
646 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** ** *
5808600 GGCACACCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTATAC
711 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
5808665 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAA
776 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * * *
5808730 CTTTTTATGATTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGCCCCCAAACCTGG
841 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
5808790 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
5808855 AAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
5808920 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
5808985 GCCAATATAAGGGCCAAGTACCAGCACCCAACACACATCATGTGCGTAC-GCCCCCGCCCCCCCG
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCG
** * * *
5809049 ATCG-TCGGAACCCCAATGCCGTTGGTCAAGTTCTCCAATGATGCTCCGGCGATGGTGCCCCGAC
261 ATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGAC
** * * *
5809113 GAAGAAAAATGCGGTGCCAACACAAGCCCGAGCCCAGCATGTGCTGCC-CAACCCTCGGTCCAAT
324 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGT
* *
5809177 CCAATCTGAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
389 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * **
5809242 AACCCATGAAACAAGCGTGCGGGCGCTCAGTCGGCTC-GAGGGGCGGGATGCGCAAAACGGGGAT
454 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-CAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
5809306 CAGTCGGGTC-CACCTTTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGT-TCGATCT
518 CGGTCGGGTCAC-CCTCTACATGCTGCTGATCCTGCTACTACAACCCTCGGTCCGGTCT-GATCT
* * * * *
5809369 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGTGGA--TG-GA-CGGGCG
581 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGACGAGCGAGCGGGCG
* * * *
5809430 GGCACTACGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATACGGTGGTAGTTGGGTTT
645 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
5809495 AGGCACATCTTCACT-TTTCTATGTGCGAATGCCATTTTTATGGCTTGTAAATTCAAACAACGGT
710 AGGCACATCTTCA-TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
5809559 CCCTTAAGCCTTCACGTGAAGTTCCACGGCAAGATGACTCGTTTTGTATTTTTCATGATTTTGGA
774 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* ** *
5809624 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAACAAGTTTTGGCCCCAAACTCGG
839 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
5809686 TAGAAGTGATCCTTGTATTTTTGTTGGCATG--CAAAAAAATTCAGTTAAAAACTAGAAGTGTAG
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
5809749 AAGTTTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
5809814 ACCTGTAAAATCTTAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
5809879 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCGGCCCCCC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCCCCC
* * * * * *
5809944 CGATCACCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTACCCCGA
259 CGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGA
* * * * *
5810009 CGAAGAAAAATGTGGTACCAGGACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCC-G
323 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* * * *
5810073 AACAAATCTTAGA-TTGGAATGAACTCCGTATGTTTAGA-TAGGGAATGAACTCCGTATGCCTAA
388 -TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAA
* * * * * *
5810136 GTTAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCTAGA-GGGCGAGATACGCAAGCTGGGG
451 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * **
5810200 ATCGATCGGGT-ACTCCTCTACATGCT-ATCGATCCTGCT-GTCGCAACCCTCGGTCTGGTCCAA
516 ATCGGTCGGGTCAC-CCTCTACATGCTGCT-GATCCTGCTACT-ACAACCCTCGGTCCGGTCTGA
* * * * * *
5810262 TCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGTG-CGGGTGGGTG
578 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCG-GACGAGCGAGCG
* * *
5810326 GGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGG
641 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
5810391 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
706 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
5810456 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
771 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * * * * * ****
5810521 AAAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTTCGGAAGCACTTTGGGGAAGAAACTTGG
836 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
5810586 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
5810651 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
5810716 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
5810781 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCCGGCCCCC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGCCCCCC
* * * * * *
5810846 CAATC-TTCAGAACCCCAATGTCGTCGGTCAGGTTCTCC-ATTGATGCTCCGACGATGGTGCCCC
259 CGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCG-CGATGGTGCCCC
*
5810909 GACGAAGAAAAATGTGGCACCAGC
321 GACGAAGAAAAATGCGGCACCAGC
5810933 TCTGCGTGCT
Statistics
Matches: 3456, Mismatches: 421, Indels: 115
0.87 0.11 0.03
Matches are distributed among these distances:
889 163 0.05
890 74 0.02
891 165 0.05
892 194 0.06
893 2 0.00
894 280 0.08
895 377 0.11
896 372 0.11
897 186 0.05
898 24 0.01
899 3 0.00
900 261 0.08
901 2 0.00
902 600 0.17
903 456 0.13
904 297 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCG
ATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
TCGGGTCACCCTCTACATGCTGCTGATCCTGCTACTACAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGACGAGCGAGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
Found at i:5808320 original size:26 final size:26
Alignment explanation
Indices: 5808291--5808343 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5808281 CTGGTCCGAT
5808291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5808317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5808343 C
1 C
5808344 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5809221 original size:26 final size:26
Alignment explanation
Indices: 5809185--5809234 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5809175 ATCCAATCTG
*
5809185 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
5809211 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
5809235 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:5811724 original size:26 final size:26
Alignment explanation
Indices: 5811695--5811747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5811685 TCGGTCCGAT
5811695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5811721 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5811747 C
1 C
5811748 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5813302 original size:26 final size:26
Alignment explanation
Indices: 5813273--5813324 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5813263 CTGATCCGAT
* *
5813273 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
5813299 CTTAGCCTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
5813325 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:5814228 original size:26 final size:26
Alignment explanation
Indices: 5814178--5814230 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5814168 CCAGTCGGAT
**
5814178 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
5814204 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5814230 C
1 C
5814231 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:5814382 original size:905 final size:896
Alignment explanation
Indices: 5812402--5814385 Score: 2735
Period size: 905 Copynumber: 2.2 Consensus size: 896
5812392 CTAGTCCAAT
* * ** * *
5812402 CTTAGACTGGGAATGAACTCCGTA-GACCTAAGTCAACCCACGGAATGAATGTGTGGGGGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * *
5812466 TCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATC
65 TCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCAGATC
** * * * ** *
5812531 CTGCTGTCGCAACTCTCGATCCGATCTAATCTTAGACTGCGAATGAACTCCATATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCA
5812596 ACCGACAAAACGAGCGGACGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGG
194 ACCGACAAAACGAGCGGACGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGG
* *
5812661 ATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTATGCGCCAATGCCATTTTTGT
259 ATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGCGCCAATGCCATTTTTAT
**
5812726 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTGCGTGAAGTTTCATGGCAAGACGACTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
5812791 TTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAGATG
389 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAGAAG
** * *
5812856 GAGTTTTGTTCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
454 GAGTTTTGCACCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
5812921 AGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
5812986 TTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
584 TTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
5813051 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
* * **
5813116 CGCACACCCCCCCCGGCCCCCCGATCATCAGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGAT
714 CGCACACCCCCCCCGACCCCCCGATCATCAGAACCCCAATACCGCCGGTCAAGTTCTCCGACGAT
* * *
5813181 GCTCCGGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCACCACATGGCCGAGCCTAGCATGTG
779 GCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCACCACATGCCCGAGCCTAGCATGTG
* *
5813246 CTGCTGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
844 CTGCTGCAACCCTCGGTCAGATCCGATCTTAGACTAGGAATGAACTCCGTATG
* * * * * * * * *
5813299 CTTAGCCTGGGAATCAACTCCATATGGCTAAGTCAATCAATGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGT
* * * * * *
5813364 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTTTGTATGCTACAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCAGATCC
* * * *
5813429 TGCTACCGCAATCCTTGATTCGATGCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* ** ** * *
5813494 CTGATGAAACGAGTGGGCGGGCAGGCGGGTGGGCACTACG-TCGGCCAGAGAGATGGGCTGCGCA
195 CCGACAAAACGA----GC-GG-A--CGGGCAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
* ** * *
5813558 AGCCATGGATCGATGGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTCTGCGTGCCAATGCC
251 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGCGCCAATGCC
5813623 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
5813688 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTT-AAAATTTT
381 CGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTT
* * *
5813752 TTCAGAAGGAGTTTT-CACTAAAACCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACA
446 TTCAGAAGGAGTTTTGCACCAAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
5813816 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACGTGTCCCCA
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCA
* * *
5813881 TTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
574 TTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
5813946 TGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCTAATATAAGGGCCAAGCACCAGCACCCATCGC
639 TGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
* * **
5814011 ACATCATGTGCGCACA-CCCCCCCGACCGCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGT
704 ACATCATGTGCGCACACCCCCCCCGACC-CCCCGATCATCAGAACCCCAATACCGCCGGTCAAGT
* * *
5814075 TCTTCGACGATGCTCCGGCGATGGTGCC-CTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGT
768 TCTCCGACGATGCTCCGGCGATGGTGCCTC-GACGAAGAAAAATGCGGCACCACCACATGCCCG-
* * * * **
5814139 GGCC-AGCATGTGCTGCTGTAACCCTTGGTCCAG-TCGGATCTTAGACTAGGAATGAACTTTGTA
831 AGCCTAGCATGTGCTGCTGCAACCCTCGGT-CAGATCCGATCTTAGACTAGGAATGAACTCCGTA
5814202 TG
895 TG
* * *
5814204 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGT
* * * * * **
5814269 CGGCCACAGGGGCGGGATACGCAAGCCAGGGATCGGCCGAGTCCCCCTCCGCGTGCTGCCCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCAGATCC
* * *
5814334 TGCTACCACAACCCTCGGTTC-AGTCCGATCTCAGACTAGGATTGAACTCCGT
131 TGCTACCGCAACCCTCGGTTCGA-TCCGATCTTAGACT-GGAATGAACTCCGT
5814386 GTGCTTAGAC
Statistics
Matches: 942, Mismatches: 127, Indels: 28
0.86 0.12 0.03
Matches are distributed among these distances:
897 167 0.18
898 2 0.00
901 2 0.00
902 2 0.00
903 5 0.01
904 126 0.13
905 633 0.67
906 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCAGATCC
TGCTACCGCAACCCTCGGTTCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAGCGGACGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
CGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGCGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAGAAGGA
GTTTTGCACCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCCGACCCCCCGATCATCAGAACCCCAATACCGCCGGTCAAGTTCTCCGACGATGC
TCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCACCACATGCCCGAGCCTAGCATGTGCT
GCTGCAACCCTCGGTCAGATCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:5814531 original size:185 final size:183
Alignment explanation
Indices: 5814158--5814685 Score: 617
Period size: 185 Copynumber: 2.9 Consensus size: 183
5814148 GTGCTGCTGT
* * ** *
5814158 AACCCTTGGTCCAGTCGGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTGGGTATGAACT
1 AACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
5814223 CCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGG-AGCTCAGCCGGCCACAGGGGCGGGAT
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-CTCAGCCGGCCAGAGGGGC-GGAT
* * * * * * *
5814287 ACGCAAGCCAGGGATCGGCCGAGTCCCCCTCCGCGTGCTGCCCATCCTGCTACCAC
129 GCACAAG-CGGGGATCGACCGGGTCCCCCACCGCATGCTGCCCATCCTGCTACCAC
* * * *
5814343 AACCCTCGGTTCAGTCCGATCTCAGACTAGGATTGAACTCCGTGTGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * *
5814408 CCGTATGCCTAAGTCAACCCGTGAAACGAGCGTGCGGGCACTTATCCGGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGC-GGATG
* * * ** * * **
5814473 CACAAGTCGGGGATCGACCGGGTCCTCCACTGCATTCTGCTGATCTTGTTGTCAC
130 CACAAG-CGGGGATCGACCGGGTCCCCCACCGCATGCTGCCCATCCTGCTACCAC
* * * * *
5814528 AACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTGGGAATGAACT
1 AACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
5814593 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGAGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCG-GATG
* *
5814658 CACAAGCTGAGGATCGACTGGGTCCCCC
130 CACAAGC-GGGGATCGACCGGGTCCCCC
5814686 TCTACGTACT
Statistics
Matches: 288, Mismatches: 52, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
184 2 0.01
185 285 0.99
186 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (183 bp):
AACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGATGC
ACAAGCGGGGATCGACCGGGTCCCCCACCGCATGCTGCCCATCCTGCTACCAC
Found at i:5814584 original size:26 final size:26
Alignment explanation
Indices: 5814548--5814600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5814538 CCAGTCCAAT
*
5814548 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5814574 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5814600 C
1 C
5814601 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5814735 original size:185 final size:183
Alignment explanation
Indices: 5814176--5814752 Score: 595
Period size: 185 Copynumber: 3.1 Consensus size: 183
5814166 GTCCAGTCGG
* *
5814176 ATCTTAGACTAGGAATGAACT-TTGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTAGGAATGAACTCCT-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
5814240 CCCACGAAAGGAGCGTGCGGGAGCTCAGCCGGCCACAGGGGCGGGATACGCAAGC-CAGGGATCG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCTGA-GGATCG
* * * * * ** ** *
5814304 GCCGAGTCCCCCTCCGCGTGCTGCCCATCCTGCTACCACAACCCTCGGTTCAGTCCG
129 ACCGGGTCCCCCTCTGCGTACTG-CGATCCTGCTGTCACAACCCTC-GAACAGTCCA
* * * *
5814361 ATCTCAGACTAGGATTGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * *
5814426 CCGTGAAACGAGCGTGCGGGCACTTATCCGGCCAGAGGGGC-AGGATGCACAAG-TCGGGGATCG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCACAAGCT-GAGGATCG
* * * * * * *
5814489 ACCGGGTCCTCCACTGCATTCTGCTGATCTTGTTGTCACAACCCTCGATCCAGTCCA
129 ACCGGGTCCCCCTCTGCGTACTGC-GATCCTGCTGTCACAACCCTCGA-ACAGTCCA
* *
5814546 ATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
5814611 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGAGATGCACAAGCTGAGGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCTGAGGATCGAC
* * * ** * * *
5814676 TGGGTCCCCCTCTACGTACTGTCGATCCTACTGTTGCAACCTTCAGAACGGTTCA
131 CGGGTCCCCCTCTGCGTACTG-CGATCCTGCTGTCACAACCCTC-GAACAGTCCA
*
5814731 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTAGGAATGAACTC
5814753 TGTATGCCTA
Statistics
Matches: 319, Mismatches: 63, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
184 2 0.01
185 312 0.98
186 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
ATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCTGAGGATCGAC
CGGGTCCCCCTCTGCGTACTGCGATCCTGCTGTCACAACCCTCGAACAGTCCA
Found at i:5815469 original size:26 final size:26
Alignment explanation
Indices: 5815440--5815492 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5815430 CCGGTCCGAT
*
5815440 CTTAGAATGGCAATGAACTCCGTATG
1 CTTAGAATGGCAATGAAATCCGTATG
* * *
5815466 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGAATGGCAATGAAATCCGTATG
5815492 C
1 C
5815493 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGCAATGAAATCCGTATG
Found at i:5816266 original size:903 final size:892
Alignment explanation
Indices: 5814518--5816369 Score: 2647
Period size: 903 Copynumber: 2.1 Consensus size: 892
5814508 TCTGCTGATC
* * * * *
5814518 TTGTTGTCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTG
1 TTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
5814583 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAG
66 GGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
* * ***
5814648 GGGCGAGATGCACAAGCTGAGGATCGACTGGGTCCCCCTCTACGTACTGTCGATCCTACTGTTGC
131 GGGCGAGATGCACAAGCCGAGGATCGACTGGGTCCCCCTATACGTACTGTCGATCCTACTACCGC
* * *
5814713 AACCTTCAGAACGGTTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAA
196 AACCCTCAGAACGATTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
* *
5814778 CGAACGGGCAGGCACTACACCGGCCAAAGAGATGGCATGCGCAAGCCATGGATCGATAGGGTGGT
261 CGAACGGGCAGGCACTACACCGGCCAAAGAGACGGCAAGCGCAAGCCATGGATCGATAGGGTGGT
*
5814843 AAGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
326 AAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
5814908 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAC
391 TACAATGGTCCCTTAAGCCTTCACGTCAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAC
*
5814973 GATATTCAAAACTTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCTACAA
456 GATATTCAAAACTTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAA
* * * * *
5815038 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAACTAAAAACTCGAT
521 ACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAA
* *
5815103 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
586 GTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
5815168 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
651 CAGCAAACCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGA
* *
5815233 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGCTCACACCCCCCCGG
716 TAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCTCACACCCCCCCGG
*
5815298 CCCCCACGATCGCTAGAAACCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTG
781 CCCCCACGATCGCTAGAAACCCAATGCCGTCAGTCAGGTTCTCCGGCGATACTCCGGCAATGGTG
** *
5815363 CCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
846 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
* *
5815410 TTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGAATGGCAATGAACTCCGTATGCTTAGACTG
1 TTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * ** * *
5815475 GGAATGAAATCTGTATGCCTAAGTCAATCGATGAAATGAGCGTGCAGGTGCTCAGCCGACCAGAG
66 GGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
* * * * * * *
5815540 GGGCGTGATGCGCAAGCCGGGGATCGGTCT-GGTCCCCCTATGCGTGCTG-CTGATCCTGCTACC
131 GGGCGAGATGCACAAGCCGAGGATC-GACTGGGTCCCCCTATACGTACTGTC-GATCCTACTACC
** *
5815603 GCAACCCTCA-ATTTGATTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
194 GCAACCCTCAGA-ACGATTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
* *** * *
5815667 AAACGAGCAGGCGGGCGGGCGTGCGGGCACTACGGGGGCCAAAGAGACGGGAAGCGCAAGCCGTG
258 AAACGA--A------C--G-G-GCAGGCACTACACCGGCCAAAGAGACGGCAAGCGCAAGCCATG
* *
5815732 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTA
311 GATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
5815797 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCATGTTTCATGGCAAGACGACTTG
376 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTAATGGCAAGACGACTCG
* * ** *
5815862 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
441 TTTTCTATTTTTCACGATATTCAAAACTTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGGAAG
* * *
5815927 GAGTTTT-GCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTC
506 GAGTTTTGGCCACAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
5815991 AGCTAAAAACACAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
571 AACTAAAAACACAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
5816056 TTTAATGGCTATTGGCAGCAAACCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
636 TTTAATGGCTACTGGCAGCAAACCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
5816121 AGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTG
701 AGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTG
* * * * * *
5816186 -TGCACACCCCCCCAGTCCCCC-CGATTG-TCGGAACCACAATGCCGTCGGTCAGGTTCTCCGGT
766 CT-CACACCCCCCC-GGCCCCCACGATCGCTAGAAACC-CAATGCCGTCAGTCAGGTTCTCCGGC
* **
5816248 GATACTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
828 GATACTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
* * * * *
5816313 GTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
5816370 CTAAGTCAAC
Statistics
Matches: 846, Mismatches: 96, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
891 2 0.00
892 219 0.26
893 3 0.00
894 1 0.00
900 1 0.00
902 8 0.01
903 381 0.45
904 231 0.27
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
TTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
GGGCGAGATGCACAAGCCGAGGATCGACTGGGTCCCCCTATACGTACTGTCGATCCTACTACCGC
AACCCTCAGAACGATTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
CGAACGGGCAGGCACTACACCGGCCAAAGAGACGGCAAGCGCAAGCCATGGATCGATAGGGTGGT
AAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTCAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATATTCAAAACTTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAA
ACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAA
GTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGA
TAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCTCACACCCCCCCGG
CCCCCACGATCGCTAGAAACCCAATGCCGTCAGTCAGGTTCTCCGGCGATACTCCGGCAATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
Found at i:5817107 original size:26 final size:26
Alignment explanation
Indices: 5817071--5817126 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
5817061 CCGATCCGAT
5817071 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * **
5817097 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCATATG
5817123 CTTA
1 CTTA
5817127 AGTCAACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:5817970 original size:26 final size:26
Alignment explanation
Indices: 5817934--5817986 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5817924 CTGGTCCGAT
*
5817934 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATAAACTCTATATG
*
5817960 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTATATG
5817986 C
1 C
5817987 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTATATG
Found at i:5820685 original size:26 final size:26
Alignment explanation
Indices: 5820635--5820687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5820625 CTGGTTCGAT
**
5820635 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5820661 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5820687 C
1 C
5820688 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5821196 original size:903 final size:901
Alignment explanation
Indices: 5817507--5824235 Score: 8265
Period size: 899 Copynumber: 7.6 Consensus size: 901
5817497 TATTTTTCAT
* * * *
5817507 GATTTTTGAAAAATTTTTT-GGAAGAAGTTTAT-GCCCCAAACATGGTAGACGTGATCCTTTTAT
1 GATTTTT-TAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
5817570 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGATGCGTACAAGATTTTGTGACCATTT
64 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
5817635 GAAAATAA-TGTCCCCATTTCAGACATTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAA
129 GAAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
5817699 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
193 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
5817764 GTACTAGTACCCATCGCACATCATCTGCGCACACCCCCTGGCCCCCCCGATCGCCGG-ACCCTAA
258 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* *
5817828 TGCCGCCGGCCAGGTTCT-C--C---G----G-CG-TGGTGCCCCGACGAAGAAAAATGCAGCAC
323 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * *
5817881 CAGCACATGCCGGAGCCTAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CCGGTCCGATCTTAGACTGGGA
* * * *
5817946 ATGAACTCTATATGCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
452 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAG
* * * * * * * * * * * *
5818011 TACGAGTGCTCAGTCGGCCAGAGGGACGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTTTA
517 TGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTG
* * * *
5818076 TGTGCT-TCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCG
582 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
5818140 TATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCAGGCGAGCGAGCACTACGCCGGCTAGAGA
647 TATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
5818205 GACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
711 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
5818270 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCCTTCACGTGAA
776 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCACGTGAA
* * *
5818335 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGG
840 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
** * ** *
5818397 GATTTTTTAAAATTTTTTTAGAACGAGTTTTGGCCCCAAACTTTTTAGACGTGATTCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
5818462 TTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGTTTTTGTGGCCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
5818527 AAAAAGCGTCCCCATTTTAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATTTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
5818592 TCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
5818657 CCAGCACGCATCGCACATCATGTGTGCACACCCCCCCG-CCCCTCGATCGTCGGAACCCCAATGC
261 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * *
5818721 CGTCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAG
326 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * *
5818786 CACATGCCCGAACCCAGCATGTGTTGTCGCAA-CCTGCGGTCCGGTCCGATCTTATACTGGGAAT
391 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGG-CCGGTCCGATCTTAGACTGGGAAT
* *
5818850 GAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA-ACGT
454 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGA-GT
* * * * * * * *
5818914 GTGGGCCCTCAGCTGGCCAGAGGGGCG-GAATGCG-ATAGCCGGGAATCGGCCAGGTACCCCTCT
518 GCGGGCGCTCAGCCGGCCAGAGGGGCGAG-ATGAGCA-AGTCGGGGATCGGCCGGGTCCCCCTCT
* * * * * **
5818977 ACGTGCTGTCGATCCTGTTGCCACATCGCTC-AGTGC-GGTCCAATCTTAGACTGGGAATGAACT
581 GCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-T-CTGGTCTGATCTTAGACTGGGAATGAACT
* * * *
5819040 CCATATGCCTAAGCCAACCGATGAAACAAG-TGC--GCGGGCGGGCGGGCACTATGCCGGCCAGA
644 CCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
5819102 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
709 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
**
5819167 CTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
774 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
5819232 AGTATCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAG
839 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * *
5819295 GATTTTTTAAAATTTTTTTGGAAAGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
5819360 TT-TCTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
66 TTGT-TGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
5819424 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
5819489 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
5819554 TACCAGCACCCATTGCAAATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * ** * * * *
5819619 GCTGCCGGTCAGCTTCTCCTACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATTCGGCACC
324 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * **
5819684 AGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGCCGGTCCGATCTTAGACTGGGAA
*
5819749 TGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA-ACG
453 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGA-G
* * * *
5819813 TGTGGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGTCGGGGATCAGCCGGGTCCCCCTCTG
517 TGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTG
* * * * * * * *
5819878 CATGTTGTTGATTCTGCTGCTGCAACCCTCGATCTGGT-TCAATCTTAGACTGGGAGTGATCTCC
582 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCC
* * *
5819942 GTATGCCTAAGCCAATCGATGAAACGA---GTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGA
646 GTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * * * * * * *
5820004 GACAGGATG-GGAAGTCGTGCACCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTT
711 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
5820068 GCGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAG
776 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
5820133 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTGA
841 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * * *
5820194 GATTTTTTAAAATTTTTTCGAAAAGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTATATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
5820259 TTGTTGGCATGCACAAAAAAATGT-AGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTG
66 TTGTTGGCATGCACAAAAAAAT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
5820323 AAAAAAGTATCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTATAAGATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
5820388 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* **
5820453 GCCAGCACCCATCGCACATCATGTGCGCACACCCACTTGGCCCCCCCGATCGCCGGAACCCCAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * * **
5820518 GCCGCCGGTCAGGTTCTCCGACGATGTTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACC
324 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
*
5820583 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCTGGTTCGATCTTAGACTGGGAA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCC-GGTCCGATCTTAGACTGGGAA
*** * * *
5820648 TGAACTTTGTATGCTTAGATTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAATGAGAGT
453 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGT
* * * * * * *
5820713 GCGGGAGCTCAACCAGCCAGGGGGGCGAGATGAGCAAGTCGGGGATTGGCCTGGTCCCCCTTTGC
518 GCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGC
* * * * *
5820778 GTGTTGCCGATCCTTGCTGCCGCAACCCTTGATCTGGTTTGATCTTAGACTGGGAATGATCTCCG
583 GTGCTGTCGATCC-TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * * * *
5820843 TATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGCAGGCGGGCAATACGCTGACCATAGA
647 TATGCCTAAGCCAACCGATGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
5820908 GACGGGATG-GGAAGCCGCGGATCGATAGGGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCT
711 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
5820971 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
776 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * *
5821036 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA
841 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* *
5821097 AATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
5821162 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
5821227 AAAAAGTGTTCCCATTTCATACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
5821292 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
5821357 CCAGCACCCACCGAACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATG
261 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
** * * ** *
5821422 CCGCTAGTCAGGTTCTTCGGCGATGCTACGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
325 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * ** ** *
5821487 GCACATGCCCGAGCCCAGCATCTTCTATCATAACCCTCGGCC--T--G------G--T----CTG
390 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGGTCCGATCTTAGACTGGGAATG
* * **
5821536 -A-T-C---TG---AGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAACGAGCGTAT
455 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGC
* * ** **
5821592 GTGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCCACG
520 GGGCGCTCAGCCGGCCAGAGGGGCGA-GATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCG
* * * * * * * * * * *
5821656 TGCTGCCAATCCTGCAGCTGTAACCCTTGGTCCGATATGATGTTAGACTGGGAATGAACTCCGTA
584 TGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
5821721 TGCCTAAGCCATCTGATGAAACGA-------GCGGGCGGGTGGGCACAATGCCGGCCAGAGAGAC
649 TGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
5821779 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
714 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
5821844 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
779 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * ** * *
5821909 CATGGCAAGATGACTCGTTTTCTATTTTTCACGGTTTTCAAAACTTTTTACTGTTCGG
844 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * *
5821967 GATTTTTTATAATTTTTTTGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
5822032 TTGTTGGCTTGCACAAAAAAA-TAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
5822096 AAAAAGTGTCCCCATTTCAGAAATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
5822161 TCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
5822226 CCAGCACCCATTGCACATCATATGCGCACACCCCCTCCCCGGCCCCCCTGATCACAGGAACCCCA
261 CCAGCACCCATCGCACATCATGTGCGCACA---CC-CCCCGGCCCCCCCGATCGCCGGAACCCCA
* * ** *
5822291 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACA
322 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * **
5822356 CCAGCACCTGCCCGAGCCCAGCATGTGCTACCGCAACCCTCCGTCGAGTTTGATCTTAGACTGGG
387 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCG-GTCCGATCTTAGACTGGG
* * *
5822421 AATGCACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
451 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGA
* * * * * * * **
5822486 GTACGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCA-CAAGCCGAGGATCGGTCGGGTCCCTGTC
516 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATG-AGCAAGTCGGGGATCGGCCGGGTCCCCCTC
* ** * *
5822550 TGCATGCTGTCGATCCTATTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAACTC
580 TGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
5822615 CGTATGCCTAAGCCAACCGATGAAATGAGCAGGCGGACGGGTGGTCGAGCACTATGCCGGCCAGA
645 CGTATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
*
5822680 GAGACGGGATGCGCAAGCCGTGGATTGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
709 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
5822744 GTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
774 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
5822809 AGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGA-TTTTCAAAGCTTTTTACGGTTCGG
839 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGG
* * * * *
5822872 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTTATCCTTGTTTTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
5822937 TTGTTGGAATGCATAAAAAAATTCAGCTGAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
5823002 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCGAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
5823067 TCTTTAAGGGGGTGTGAGTTCTGGAGGTGTGATGGGGGATAGGGGGCCAATATAAGGGGCCAAGT
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGT
* * * *
5823132 ACCAGCACCCATCACACATCTTGTGCGCACACCCCCCGGCCCCCCTGATCGCCGAAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * ** *** *
5823197 CCGTCTGTCAGGTTCTCTGGCGATGCTTTGACGATGGTG--CC-AC--AG--CCCT-CGG-TCC-
325 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * ** **
5823252 G-----GTCCGATCTTAGACA---G--G--G-AA---T-GAAC--TCCGCATGCTTAGACTGGGA
390 GCACATGCCCGAGCCCAG-CATGTGCTGCCGCAACCCTCGGCCGGTCCG-AT-CTTAGACTGGGA
* * * * * * *
5823298 ATGAACT-C---TGCAT-GCCT---AAGTCAAC-CC--A---CGAAAT-GAG--------C----
452 ATGAACTCCATATGCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGA
* * *
5823336 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCT
516 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* ** * * * *
5823401 GTGCACTGCCGATCCTACCGCCGTAACCCTCGATC----C-G------G--TGGGAATGAACTCC
581 GCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
5823453 GTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAG
646 GTATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * * * *
5823518 AGACAGGATGCGGAAGCCGTGAATCGATCGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTC
710 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
5823583 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCTTTCACGTGAA
775 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
5823648 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
840 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
** * * *
5823710 GATTTTTTAAAATTTTTTCCAAAAGTGTTTTGGCCCCAAACTTGGAAGA-GATGATCCTTGTATT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATT
* * * * *
5823774 TCTGTTGGGATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACATGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
5823839 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
** * * *
5823904 CTCTTTAAGAAGGTGTCAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAAGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
5823969 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGCCCCCCTGATCACCGGAACCCCAA
260 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAA
* * * * * *
5824034 TGTCGTCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCGGCAC
323 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
*
5824099 CAGCACATGCGCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CCGGTCCGATCTTAGACTGGGA
* * * * * * *
5824164 AAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCGACCGACGAAACGAGCG
452 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAG
*
5824229 GGCGGGC
517 TGCGGGC
5824236 AGACGCGCGG
Statistics
Matches: 5060, Mismatches: 619, Indels: 318
0.84 0.10 0.05
Matches are distributed among these distances:
837 132 0.03
838 372 0.07
839 68 0.01
841 2 0.00
842 1 0.00
844 2 0.00
845 1 0.00
846 2 0.00
847 3 0.00
848 2 0.00
849 1 0.00
850 80 0.02
853 2 0.00
854 8 0.00
856 1 0.00
858 1 0.00
860 1 0.00
861 2 0.00
862 1 0.00
863 4 0.00
864 1 0.00
865 1 0.00
866 20 0.00
867 3 0.00
868 40 0.01
869 218 0.04
870 229 0.05
871 9 0.00
872 120 0.02
873 4 0.00
874 6 0.00
875 4 0.00
876 86 0.02
877 105 0.02
878 1 0.00
879 3 0.00
880 4 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 3 0.00
888 9 0.00
889 30 0.01
890 274 0.05
891 2 0.00
892 9 0.00
893 1 0.00
894 2 0.00
895 4 0.00
896 2 0.00
897 1 0.00
898 514 0.10
899 837 0.17
900 418 0.08
901 19 0.00
902 192 0.04
903 666 0.13
904 70 0.01
905 221 0.04
906 203 0.04
907 36 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGGTCCGATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTG
CTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
Found at i:5822446 original size:26 final size:26
Alignment explanation
Indices: 5822410--5822462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5822400 CGAGTTTGAT
*
5822410 CTTAGACTGGGAATGCACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5822436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5822462 C
1 C
5822463 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5823289 original size:26 final size:26
Alignment explanation
Indices: 5823260--5823312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5823250 CCGGTCCGAT
5823260 CTTAGACAGGGAATGAACTCCGCATG
1 CTTAGACAGGGAATGAACTCCGCATG
* *
5823286 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACAGGGAATGAACTCCGCATG
5823312 C
1 C
5823313 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGCATG
Found at i:5824181 original size:26 final size:26
Alignment explanation
Indices: 5824152--5824202 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5824142 CCGGTCCGAT
5824152 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
5824178 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAAAGAACTCCGTAT
5824203 CCCTAAGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5825799 original size:26 final size:26
Alignment explanation
Indices: 5825763--5825818 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
5825753 TTGATCCAAT
5825763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5825789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5825815 CTTA
1 CTTA
5825819 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5826151 original size:893 final size:895
Alignment explanation
Indices: 5824178--5827606 Score: 4106
Period size: 877 Copynumber: 3.9 Consensus size: 895
5824168 ACTCCGTATG
* * * * * *
5824178 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCGACCGACGAAACGAGCGGGCGGGCAGACGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
*
5824243 CGGGCACTACGCCGGCCAGAGAGACGGGATG-TGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCT-CAAGCCATGGATCGATAGGGTGGTAGGTGGG
* *
5824307 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
5824372 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTT
* *
5824437 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
260 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGTTTTGGCCCCAAACTTGGT
*
5824502 AGACGTGATCCTTGTT-TTTTTGTTGGCATGCAAAAAAACATTCAGCTAAAAACTCGAAGTGTAC
324 AGACGTGATCCTTGTTATTTTTGTTGGCATGC----ACA-ATTCAGCTAAAAACTCGAAGTGTAC
*
5824566 AAGATTTTGTGACCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
5824631 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAAGGG
449 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGG
* *
5824696 GCCAATATACA-AGCCAAGTACCCA-CACCCATCGCACATCATGTGCACACACCC-CCCGGCCCT
513 GCCAATATA-AGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCACACACCCACCCGGCCCC
*** *
5824758 CCCGATCGCCGGAACTGTAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
576 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * *
5824823 GGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACC-C--T-TG
641 GGTGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTG
5824884 ----G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
705 ATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
5824928 TCAACCCACAAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
770 TCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CAGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
* * * * * * * **
5824993 TCAGTCGGGTCCCCCTCTGCATGCTGTCGATCTTGTTGCCGTAACCCTCACTCCGGTCCAAT
834 TCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGTTGTCATAACCCTCAGTCTGGTCTGAT
* * * * *
5825055 CTTAGACTGGTAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGACGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * **
5825120 CAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTAATAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
5825185 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
5825250 TCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTG
* *
5825315 AAACTTTTTGCGTTTCGGGATTTTTTAAAATTTTTTCGGAAAGCGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGTTTTGGCCCCAAACTTGGTA
*
5825380 GACGTGATCCTT-TTATTTTTGTTGGCATGCAC-A-TCAACTAAAAACTCGAAGTGTACAAGATT
325 GACGTGATCCTTGTTATTTTTGTTGGCATGCACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
** *
5825442 TTGTGACCATTTGAAAAAAGTGTCCTTATTTCA-ACACTTTAATGGCTACTGGCAGCAAACTTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
5825506 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATA
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATA
*
5825571 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CC-CCCGGCCCCCCCGATCGT
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCACCCGGCCCCCCCGATCGC
* * * * *
5825634 CGGAACCCCAATGTCGCCGGTCAGGTTCTTCGACAATGCTCCGGCGATGGTACCCCGGTGAAGAA
585 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAA
* * * * *
5825699 AAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTTCTGCCGTAACCCTCGGTTTGATCCAATC
650 AAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAA-CCTCGGTCTGATCCGATC
* *
5825764 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCA
713 TTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * *
5825829 TGAAATGAGCATGCGGGCGCTCAGTCAGCCAGAGGGGTAGGATGCACAAGCCGAGGATCAGCCGG
778 CGAAATGAGCGTGCGGGCGCTCAG-CAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGTCGG
* * * *
5825894 GTCCCCCTTTGCGTGCTACCTATCCTGTTGTCATAACCCTCAGTCTGGTCTGCT
842 GTCCCCCTCTGCGTGCTATCGATCCTGTTGTCATAACCCTCAGTCTGGTCTGAT
* * * *
5825948 GTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGAACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
** *
5826013 CGGGCACTACGCCGGCCAGAGAGACGAGATGCTCAAG-TGTGGATCGATAGGGTGGTTGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* ** *
5826077 TTAGGCACATCTTCATATTTTTTTATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * *
5826142 CCACCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAACTTTT
196 TC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTT
* *** *
5826207 AAAACTTTTT----TTC-GG----TTTGGGATTTTTT----A-A-------CCCCAAACATGGTA
260 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
* *
5826251 GACGTGATCCCTG-TATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 GACGTGATCCTTGTTATTTTTGTTGGCATGCAC-----AATTCAGCTAAAAACTCGAAGTGTACA
* * **
5826315 AGATTCTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGATAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * **
5826379 CCTGTAAAAGCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGTGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG-GGG
* * * *
5826444 CCAATATAAGGGCCCA-T--C-GCA--CAT----CAT-GTGGGCACAC-CCCGCCCGG-CCCCCC
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCACCCGGCCCCCCC
*** * *
5826496 GATCATTGGAACCCCAATTCTGCCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCGGT
579 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGT
* * *
5826550 AAAGAAAAATGCGTCACCAGCACATGCCGGAGCCTAGCATGTGCTGCCGCAACCTCGGTCT-AGT
644 GAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGA-T
* *
5826614 CCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTC
707 CCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
5826679 AACCCACGAAACGAGCGTGCGGGTAG-TCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
772 AACCCACGAAATGAGCGTGCGGG-CGCTCAGCAG-CCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * * ** * *
5826743 C-GATCGAGTCCCCCTCTGTGTGCCATCGATCCTACTGTCACAACCCTCAGTCTGATCTGAT
835 CAG-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGTTGTCATAACCCTCAGTCTGGTCTGAT
* * * * *
5826804 CTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACTGACGAAATGA--GTG-GG--TGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * * *
5826864 CGGGCACTACTCTGGCGAGAGAGACGGGATGC-CAAGTCGTGGATCGATA-GGTGGTA-GTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
5826926 TTAGGCACATCTTCATATTTCTACATGCCAATG-CATTTTTATGGCTTGTAAAATTCATACAATG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATG
* *
5826990 GT-CCTTAAGCCTTCACGTGAAGTTTCCATGGCAAGACGAGTTCGTTCTCTATTTTTCATGATTT
195 GTCCCTTAAGCCTTCACGTGAAGTTT-CATGGCAAGACGA-CTCGTTCTCTATTTTTCACGATTT
* * * *
5827054 TTGAAACTTTTTGTGGTTCGAGACTATTTTTAAAATTTTTTGGAAGGAGTTTTGGCTGCACAAA-
258 TTGAAACTTTTTGCGGTTCGGGA-T-TTTTTAAAATTTTTTGGAAAGAGTTTTGGC--CCCAAAC
* * *
5827118 TTGGTAGACATGATTCCTTGTTACTTTTG-TGGGATGCACAAAAAAAATTCAGCTAAAAACTCGA
319 TTGGTAGACGTGA-TCCTTGTTATTTTTGTTGGCATGCAC------AATTCAGCTAAAAACTCGA
* *
5827182 AGTGAACAAGATTTTGGTGGACCATTTGAAAAAAGTTGTCCCCATTTCAGAC-CTTTAATGACTA
377 AGTGTACAAGATTTT-GT-GACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTA
* * * * * *
5827246 CTGGCAGCAAGCCTGTAAAACCTCAAATGCTCTATAAGAGGGTGTAAGTTCTCGAGGTTTGATGA
439 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
5827311 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCAC
504 GGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCAC
* ** *
5827376 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGAT
568 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
** * * * *
5827441 GGTGCCCCGACGAAGCAAAATGCGACACCAACACATGCGCGAGCCCAGCATGTGCTGCCACAACC
633 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAA-C
* *
5827506 CTCGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
696 CTCGGTCTGATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
5827571 ATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCG
761 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
5827607 GGCGGGCGGG
Statistics
Matches: 2194, Mismatches: 245, Indels: 201
0.83 0.09 0.08
Matches are distributed among these distances:
847 22 0.01
848 27 0.01
849 81 0.04
850 10 0.00
851 45 0.02
853 4 0.00
854 3 0.00
855 4 0.00
856 211 0.10
857 59 0.03
858 1 0.00
860 10 0.00
862 1 0.00
865 2 0.00
866 1 0.00
867 119 0.05
868 95 0.04
869 92 0.04
870 58 0.03
871 44 0.02
872 3 0.00
873 15 0.01
874 18 0.01
875 47 0.02
876 5 0.00
877 353 0.16
878 216 0.10
879 37 0.02
881 1 0.00
882 4 0.00
884 13 0.01
885 1 0.00
888 6 0.00
889 11 0.01
890 8 0.00
891 39 0.02
892 86 0.04
893 290 0.13
897 1 0.00
901 1 0.00
902 58 0.03
903 92 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGAGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTG
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTTATTTTTGTTGGCATGCACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCACCCGGCCCCCCCGATCGCC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAA
AATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGATCCGATCTTA
GACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AATGAGCGTGCGGGCGCTCAGCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGTCGGGTCC
CCCTCTGCGTGCTATCGATCCTGTTGTCATAACCCTCAGTCTGGTCTGAT
Found at i:5826648 original size:26 final size:26
Alignment explanation
Indices: 5826619--5826671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5826609 CTAGTCCGAT
5826619 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
5826645 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5826671 C
1 C
5826672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5827551 original size:26 final size:26
Alignment explanation
Indices: 5827522--5827574 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5827512 CCGGTCCGAT
5827522 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
5827548 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5827574 C
1 C
5827575 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5828261 original size:740 final size:748
Alignment explanation
Indices: 5826804--5828345 Score: 2252
Period size: 740 Copynumber: 2.1 Consensus size: 748
5826794 CTGATCTGAT
* * * * *
5826804 CTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACTGACGAAATGA---GTGGG-TGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
* *
5826865 GGGCACTACTCTGGCGAGAGAGACGGGATGCCAAGTCGTGGATCGATAGGTGGTAGTGGGTTTAG
66 GGGCACTACTCCGGCGAGAGAGACGGGATGCCAAGCCGTGGATCGATAGGTGGTAGTGGGTTTAG
5826930 GCACATCTTCATATTTCTACATGCCAATGCATTTTTATGGCTTGTAAAATTCATACAATGGTCCT
131 GCACATCTTCATATTTCTACATGCCAATGCATTTTTATGGCTTGTAAAATTCATACAATGGTCCT
* ** *
5826995 TAAGCCTTCACGTGAAGTTTCCATGGCAAGACGAGTTCGTTCTCTATTTTTCATGATTTTTGAAA
196 TAAGCCTTCACGTGAAGTTTCCATGGAAAGACGAACTCGTTCTCTATTTTTCACGATTTTTGAAA
**
5827060 CTTTTTGTGGTTCGAGACTATTTTTAAAATTTTTTGGAAGGAGTTTTGGCTGCACAAATTGGTAG
261 CTTTTTGTGGTTCGAGACTATTTTTAAAATTTTTTGGAAGGAGTTTTGGCAACACAAATTGGTAG
* *
5827125 ACATGATTCCTTGTTACTTTTGTGGGATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGAACA
326 ACATGATTCCTTGTTACTTTTGTGGCATGCACAAAAAAAATTCAGCAAAAAACTCGAAGTGAACA
5827190 AGATTTTGGTGGACCATTTGAAAAAAGTTGTCCCCATTTCAGACCTTTAATGACTACTGGCAGCA
391 AGATTTTGGTGGACCATTTGAAAAAAGTTGTCCCCATTTCAGACCTTTAATGACTACTGGCAGCA
* * *
5827255 AGCCTGTAAAACCTCAAATGCTCTATAAGAGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTGCAAAACCTCAAATGCTCTATAAGAGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGG
* *
5827320 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCACCCGGCCCCC
521 GGCAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCACCCGGCCCCC
* * * * *
5827385 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCG
586 CCGATCGCCGGAACCCCAATGACGCCGGTCAAGTTCTCCGGCGATGCTTCGACGATGGTGCCCCA
* * *
5827450 ACGAAGCAAAATGCGACACCAACACATGCGCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCG
651 ACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTACG
*
5827515 GTCCGATCTTAGACTGGGAAAGAACTCCGTATG
716 GTCCGATCTTAGACTGAGAAAGAACTCCGTATG
*
5827548 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
5827613 CGGGCACTAC-CCGGTC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGG
65 CGGGCACTACTCCGG-CGAGAGAGACGGGATGC-CAAGCCGTGGATCGATA-GGTGGTA-GTGGG
* * * *
5827676 TTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT-AAATTCTTACAAT
126 TTTAGGCACATCTTCATATTTCTACATGCCAATG-CATTTTTATGGCTTGTAAAATTCATACAAT
*
5827740 GGTCCCTTAAGCCTTCACGTGAAGTTT-CATGGAAAGAC-AACTCGTTTTCTATTTTTCACGATT
190 GGT-CCTTAAGCCTTCACGTGAAGTTTCCATGGAAAGACGAACTCGTTCTCTATTTTTCACGATT
*
5827803 TTTGAAACTTTTTGTGGTTCGAGA-T-TTTTTCAAATTTTTTCGGAAGGAGTTTTGG-AAC-CAA
254 TTTGAAACTTTTTGTGGTTCGAGACTATTTTTAAAATTTTTT-GGAAGGAGTTTTGGCAACACAA
** * *
5827864 ACTTGGTAGATGTGA-TCCTTG-TATTTTTGTTGGCATGCAC-AAAACAATTCAGCAAAAAACTC
318 A-TTGGTAGACATGATTCCTTGTTACTTTTG-TGGCATGCACAAAAAAAATTCAGCAAAAAACTC
* *
5827926 GAAGTGTACAAGATTTT-GT-GACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGC
381 GAAGTGAACAAGATTTTGGTGGACCATTTGAAAAAAGTTGTCCCCATTTCAGAC-CTTTAATGAC
* ** * * *
5827988 TACTGGCAGTAAACCTGCAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-T
445 TACTGGCAGCAAACCTGCAAAACCTCAAATGCTCTATAAGAGGGTGTAAGTTCTCGAGGTTTGAT
*
5828052 AAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCA-CCATCACACATCATGTGCGCAC-CCC
510 AAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCC
* *
5828115 -CCCGGCCCCCCCGATCGCCGGAACCCCATTGACGCCGGTCAAGTTCTCTGGCGATGC-TCTGAC
575 ACCCGGCCCCCCCGATCGCCGGAACCCCAATGACGCCGGTCAAGTTCTCCGGCGATGCTTC-GAC
*
5828178 GATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
639 GATGGTGCCCCAACGAAGAAAAATGCGA-CACCAACACATGCCCGAGCCCAGCATGTGCTGCCAC
* *
5828242 AACCCTCGGTACGGTCCGATCTTAGACTGAGAATGAACTTCGTATG
703 AACCCTCGGTACGGTCCGATCTTAGACTGAGAAAGAACTCCGTATG
* * * * *
5828288 CTTAAACTGGGAATCAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGC
5828346 ACTCAGCCGA
Statistics
Matches: 720, Mismatches: 60, Indels: 40
0.88 0.07 0.05
Matches are distributed among these distances:
739 4 0.01
740 204 0.28
741 3 0.00
742 20 0.03
743 53 0.07
744 124 0.17
745 2 0.00
746 43 0.06
747 19 0.03
748 48 0.07
749 48 0.07
750 52 0.07
751 61 0.08
752 39 0.05
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (748 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
GGGCACTACTCCGGCGAGAGAGACGGGATGCCAAGCCGTGGATCGATAGGTGGTAGTGGGTTTAG
GCACATCTTCATATTTCTACATGCCAATGCATTTTTATGGCTTGTAAAATTCATACAATGGTCCT
TAAGCCTTCACGTGAAGTTTCCATGGAAAGACGAACTCGTTCTCTATTTTTCACGATTTTTGAAA
CTTTTTGTGGTTCGAGACTATTTTTAAAATTTTTTGGAAGGAGTTTTGGCAACACAAATTGGTAG
ACATGATTCCTTGTTACTTTTGTGGCATGCACAAAAAAAATTCAGCAAAAAACTCGAAGTGAACA
AGATTTTGGTGGACCATTTGAAAAAAGTTGTCCCCATTTCAGACCTTTAATGACTACTGGCAGCA
AACCTGCAAAACCTCAAATGCTCTATAAGAGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGG
GGCAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCACCCGGCCCCC
CCGATCGCCGGAACCCCAATGACGCCGGTCAAGTTCTCCGGCGATGCTTCGACGATGGTGCCCCA
ACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTACG
GTCCGATCTTAGACTGAGAAAGAACTCCGTATG
Found at i:5828301 original size:26 final size:26
Alignment explanation
Indices: 5828262--5828314 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
5828252 ACGGTCCGAT
* *
5828262 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAAACTGAGAATCAACTCT-GTATG
*
5828288 CTTAAACTGGGAATCAACTCTGTATG
1 CTTAAACTGAGAATCAACTCTGTATG
5828314 C
1 C
5828315 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCTGTATG
Found at i:5829378 original size:4 final size:4
Alignment explanation
Indices: 5829369--5829398 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
5829359 GACGAAACGA
*
5829369 GCGG GCGG GCGG GCGG GCGA GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
5829399 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:5829821 original size:884 final size:884
Alignment explanation
Indices: 5827548--5830815 Score: 4823
Period size: 884 Copynumber: 3.7 Consensus size: 884
5827538 ACTCCGTATG
* *
5827548 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGGCGGGC--G
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
5827607 -G-GCGGGCGGGCACTAC-CCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGT
66 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
5827669 AGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCT
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* **
5827734 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTCTA-TTTTTCA
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
* * **
5827798 CGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGAACCA
261 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
5827863 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCAAAAAACTCGA
326 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGA
*
5827928 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
391 AGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * * *
5827993 GCAGTAAACCTGCAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-TAAGGG
456 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* *
5828057 ATAGGGGGCAAATATAAGGGCCAAGTACCAGCA-CCATCACACATCATGTGCGCAC-CCCCCCGG
521 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G
* * * * * * * * *
5828120 CCCCCCCGATCGCCGGAACCCCATTGAC-GCCGGTCAAGTTC-TCTGGCGATGCTCTGACGATGG
585 CCCCCCCGATCGCCGAAACCCCAAT-CCTGTCGATCAGGTTCTTC-GACGATGCTCCGTCGATGG
* * * *** *
5828183 TGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
648 TGCCTCAGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
5828248 CGGTACGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAAACTGGGAATCAACTCTGTAT
713 ---T---G---G----T---CT--G-AT---C--CG-AT-CTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
5828313 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGACGGGATGCGCAAG
752 GCCTAAGTCAACCCATGAAACGAGCATACCGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAA-
* ** * * ** * * * * * *
5828378 TCGGGGATCGGCCAAGTCCCCCTCTGTGTGCCACCGATCCTGCTACCGTAACCCTTGGTCTAGTC
816 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATGTTGCTGCCGCAACCCTCGATCTGGTG
5828443 TGAT
881 TGAT
* * * * * * *
5828447 CTTAGACTAGTAATGAACTCCGAATGCCTAAGCTAACCGATGAAACGATCGGGCGGACGGGCGGG
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
5828512 C-A-------GGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCTGTAGATCGATAGGGTGGT
66 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
5828569 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAACTTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
5828634 TACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTT-A
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
* * *
5828698 CGATTTTTGAAA-TGTTTTGCGGTTTGAGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCC
261 CGATTTTTGAAACT-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
5828761 AAACTTGGTAGACGTGATCCTTGTATTTTTATTGACATGCACAAAAAAATTCAGCTAAAAACTTG
325 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCG
* *
5828826 AAGCGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACT
390 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
5828891 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGG
455 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGG
5828956 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
520 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
5829021 CCCCCCCGATCGCCGAAACCTCAATCCTGTCAATCAGGTTCTTCGACGATGCTCCGTCGATGGTG
585 CCCCCCCGATCGCCGAAACCCCAATCCTGTCGATCAGGTTCTTCGACGATGCTCCGTCGATGGTG
*
5829086 CCTCAGTAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
650 CCTCAGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
5829151 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATA
715 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATA
5829216 CCGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAACCGGGGATCGGCCGGGTCCCCCTCTGCGT
780 CCGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAACCGGGGATCGGCCGGGTCCCCCTCTGCGT
5829281 GCTACCGATGTTGCTGCCGCAACCCTCGATCTGGTGTGAT
845 GCTACCGATGTTGCTGCCGCAACCCTCGATCTGGTGTGAT
5829321 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
5829386 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
5829451 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
5829516 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
* * *
5829581 CGATTTTTGAAACTTTTTACGGTTCGGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
261 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
5829646 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTAC-AAAAAACGCTAGCTAAAAACTCG
326 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTC-AGCTAAAAACTCG
* * *
5829710 AAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
390 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
5829775 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGG
455 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGG
5829840 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
520 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
*
5829905 CCCCCCCGATCGCCGAAACCTCAATCCTGTCGATCAGGTTCTTCGACGATGCTCCGTCGATGGTG
585 CCCCCCCGATCGCCGAAACCCCAATCCTGTCGATCAGGTTCTTCGACGATGCTCCGTCGATGGTG
5829970 CCTCAGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
650 CCTCAGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
5830035 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATA
715 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATA
*
5830100 CCGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAACCGGGGATCGGCTGGGTCCCCCTCTGCGT
780 CCGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAACCGGGGATCGGCCGGGTCCCCCTCTGCGT
5830165 GCTACCGATGTTGCTGCCGCAACCCTCGATCTGGTGTGAT
845 GCTACCGATGTTGCTGCCGCAACCCTCGATCTGGTGTGAT
* *
5830205 CTTAGACTGGAAATGAACTCCGTATGCCTAAACCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
5830270 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
5830335 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
5830400 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAATCGTTTTC-AATTTTTCA
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
* * * *
5830464 CGATTTTTGAATCTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTTGGACGGAGTTTTGGCCCC
261 CGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * * *
5830528 AAAATTTGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
325 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCG
** *
5830593 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGACACTTTAATGGCTACT
390 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
5830658 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
455 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
5830723 GATAGGGGG-CAATATAAGGGCCAAGTACTAGCACCCATCGCACATGATGTGCACACACCCCCCC
520 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCC
* *
5830787 CCGCCCCCCCGATCGTCGGAACCCCAATC
582 CCGCCCCCCCGATCGCCGAAACCCCAATC
5830816 GTACCTGTAG
Statistics
Matches: 2177, Mismatches: 159, Indels: 80
0.90 0.07 0.03
Matches are distributed among these distances:
874 115 0.05
875 80 0.04
876 2 0.00
877 2 0.00
879 1 0.00
882 221 0.10
883 278 0.13
884 823 0.38
885 32 0.01
888 1 0.00
892 1 0.00
895 1 0.00
898 1 0.00
899 248 0.11
900 219 0.10
901 131 0.06
902 9 0.00
903 11 0.01
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCA
CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGA
AGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
CCCCCCGATCGCCGAAACCCCAATCCTGTCGATCAGGTTCTTCGACGATGCTCCGTCGATGGTGC
CTCAGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGG
TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATAC
CGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAACCGGGGATCGGCCGGGTCCCCCTCTGCGTG
CTACCGATGTTGCTGCCGCAACCCTCGATCTGGTGTGAT
Found at i:5830260 original size:4 final size:4
Alignment explanation
Indices: 5830253--5830282 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
5830243 GACGAAAAGA
*
5830253 GCGG GCGG GCGG GCGG GCGA GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
5830283 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:5830975 original size:21 final size:21
Alignment explanation
Indices: 5830951--5831071 Score: 71
Period size: 21 Copynumber: 5.8 Consensus size: 21
5830941 TGTATTTTAT
5830951 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATATGTA
*
5830972 TATTT-TTACTTATT-TATTTA
1 TATTTATTA-TTATTATATGTA
*
5830992 TTTTTCTATTAATGT-TTATATGTA
1 -TATT-TATT-AT-TATTATATGTA
*
5831016 T-TTTA-T-TTA-TATAGTTCTA
1 TATTTATTATTATTATA--TGTA
5831035 TATTTATTATATATTATAAT-T-
1 TATTTATTAT-TATTAT-ATGTA
5831056 TATTTATTATTATTAT
1 TATTTATTATTATTAT
5831072 TATTTTTTCT
Statistics
Matches: 80, Mismatches: 4, Indels: 33
0.68 0.03 0.28
Matches are distributed among these distances:
17 5 0.06
18 1 0.01
19 4 0.05
20 19 0.24
21 26 0.32
22 5 0.06
23 9 0.11
24 10 0.12
25 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.64
Consensus pattern (21 bp):
TATTTATTATTATTATATGTA
Found at i:5831056 original size:17 final size:18
Alignment explanation
Indices: 5831017--5831072 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 18
5831007 TTATATGTAT
*
5831017 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATATA
5831037 TTTATTATATATTATA-A
1 TTTATTATATATTATATA
5831054 TTTATT-TATTATTAT-TA
1 TTTATTATA-TATTATATA
5831071 TT
1 TT
5831073 ATTTTTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 2 0.06
17 16 0.48
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATTATATATTATATA
Found at i:5831700 original size:20 final size:20
Alignment explanation
Indices: 5831675--5831719 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
5831665 TTTCGGGAAC
5831675 TTCCGACAAAAAAACCCAGA
1 TTCCGACAAAAAAACCCAGA
*
5831695 TTCCGACAACAAAACCCAGA
1 TTCCGACAAAAAAACCCAGA
*
5831715 ATCCG
1 TTCCG
5831720 GTGAATCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.33, G:0.11, T:0.11
Consensus pattern (20 bp):
TTCCGACAAAAAAACCCAGA
Found at i:5832141 original size:17 final size:16
Alignment explanation
Indices: 5832107--5832146 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5832097 TTAGATTAGG
*
5832107 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
5832123 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
5832140 TTTATTT
1 TTTATTT
5832147 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:5832153 original size:17 final size:17
Alignment explanation
Indices: 5832133--5832180 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
5832123 TTTATCTTAA
5832133 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
5832149 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
5832167 TTTCTATTTTTATT
1 TTT-TATTTTTATT
5832181 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:5832180 original size:14 final size:14
Alignment explanation
Indices: 5832133--5832190 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5832123 TTTATCTTAA
5832133 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
5832145 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
5832159 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
5832174 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
5832188 TTT
1 TTT
5832191 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:5832195 original size:17 final size:17
Alignment explanation
Indices: 5832156--5832195 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
5832146 TTTGTTTTAC
*
5832156 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
5832173 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
5832187 TTTTCTTTA
1 TTTTCTTTA
5832196 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:5832347 original size:118 final size:119
Alignment explanation
Indices: 5832201--5832433 Score: 373
Period size: 118 Copynumber: 2.0 Consensus size: 119
5832191 CTTTAAATAA
5832201 AAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAATCAAAATTTCCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* * *
5832265 TAAATTTTC-AAAGAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
65 TAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
*
5832320 AAATCAAAGTTT-CAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATCAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
5832384 AAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
66 AAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
5832434 CTACACAAGA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
118 83 0.78
119 23 0.22
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (119 bp):
AAATCAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
AAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:5832370 original size:60 final size:58
Alignment explanation
Indices: 5832198--5832433 Score: 316
Period size: 58 Copynumber: 4.0 Consensus size: 58
5832188 TTTCTTTAAA
5832198 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-CAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* ***
5832259 TAAAAATAAATTTTC-AAAGAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAA-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
**
5832317 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAA-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
5832377 TAAAAATAAATTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
5832434 CTACACAAGA
Statistics
Matches: 156, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
58 81 0.52
59 21 0.13
60 47 0.30
61 7 0.04
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
TAAAAATAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:5836337 original size:28 final size:27
Alignment explanation
Indices: 5836305--5836396 Score: 85
Period size: 23 Copynumber: 3.7 Consensus size: 27
5836295 AACAATGGAT
*
5836305 GAAAAATGAGAAAAGAGAAAGAAATGA
1 GAAAAATGAGAAAAAAGAAAGAAATGA
* *
5836332 TGAAAAAAG-GAAAAAAAAAAG-AA--A
1 -GAAAAATGAGAAAAAAGAAAGAAATGA
5836356 GAAAAA--AG-AAAAAGAAAGAAATGA
1 GAAAAATGAGAAAAAAGAAAGAAATGA
5836380 G-AAAATGA-AAAAAAGAA
1 GAAAAATGAGAAAAAAGAA
5836397 GATTCAAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
21 9 0.17
22 3 0.06
23 10 0.19
24 3 0.06
25 9 0.17
26 2 0.04
27 10 0.19
28 7 0.13
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (27 bp):
GAAAAATGAGAAAAAAGAAAGAAATGA
Found at i:5836339 original size:21 final size:22
Alignment explanation
Indices: 5836309--5836391 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
5836299 ATGGATGAAA
* * *
5836309 AATGAGAAAAGAGAAAGAAATG
1 AATGAAAAAAGAAAAAGAAAAG
*
5836331 -ATGAAAAAAGGAAAAAAAAAAG
1 AATGAAAAAA-GAAAAAGAAAAG
*
5836353 AAAGAAAAAAGAAAAAG-AAAG
1 AATGAAAAAAGAAAAAGAAAAG
*
5836374 AAATGAGAAAATGAAAAA
1 -AATGA-AAAAAGAAAAA
5836392 AAGAAGATTC
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
21 12 0.24
22 19 0.39
23 18 0.37
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.06
Consensus pattern (22 bp):
AATGAAAAAAGAAAAAGAAAAG
Found at i:5836363 original size:7 final size:7
Alignment explanation
Indices: 5836333--5836392 Score: 50
Period size: 8 Copynumber: 8.0 Consensus size: 7
5836323 AAGAAATGAT
5836333 GAAAAAA
1 GAAAAAA
5836340 GGAAAAAA
1 -GAAAAAA
*
5836348 AAAAGAAA
1 GAAA-AAA
5836356 GAAAAAA
1 GAAAAAA
5836363 G-AAAAA
1 GAAAAAA
5836369 GAAAGAAA
1 GAAA-AAA
*
5836377 TGAGAAAAT
1 -GA-AAAAA
5836386 GAAAAAA
1 GAAAAAA
5836393 AGAAGATTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
6 6 0.14
7 13 0.30
8 18 0.42
9 4 0.09
10 2 0.05
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.03
Consensus pattern (7 bp):
GAAAAAA
Found at i:5836367 original size:17 final size:17
Alignment explanation
Indices: 5836337--5836398 Score: 65
Period size: 17 Copynumber: 3.7 Consensus size: 17
5836327 AATGATGAAA
*
5836337 AAAGGAAAAA-AAAAAG
1 AAAGAAAAAAGAAAAAG
5836353 AAAGAAAAAAGAAAAAG
1 AAAGAAAAAAGAAAAAG
** *
5836370 AAAGAAATGAGAAAATG
1 AAAGAAAAAAGAAAAAG
5836387 AAA-AAAAGAAGA
1 AAAGAAAA-AAGA
5836399 TTCAAATTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
16 12 0.32
17 26 0.68
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (17 bp):
AAAGAAAAAAGAAAAAG
Found at i:5837712 original size:41 final size:42
Alignment explanation
Indices: 5837641--5837896 Score: 376
Period size: 41 Copynumber: 6.1 Consensus size: 42
5837631 ATGATTGTAA
* *
5837641 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
5837683 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* * *
5837724 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
*
5837766 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
*
5837807 AGGAGCAATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* * *
5837848 AGGAGCAATTTATGTTTCTC-AAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTT-TCAAAAGTCGTGGTGCCTCTGTTTAG
5837891 AGGAGC
1 AGGAGC
5837897 TTTGGTAAAA
Statistics
Matches: 196, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
40 5 0.03
41 105 0.54
42 54 0.28
43 30 0.15
44 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (42 bp):
AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:5837753 original size:83 final size:83
Alignment explanation
Indices: 5837641--5837896 Score: 424
Period size: 83 Copynumber: 3.1 Consensus size: 83
5837631 ATGATTGTAA
5837641 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
5837706 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
5837724 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
*
5837789 CGTGGTGCCTCTGTTTAA
66 CGTGGTGCCTCTGTTTAG
* *
5837807 AGGAGCAATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAA
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAA
* * *
5837871 GTCATTGAGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
5837891 AGGAGC
1 AGGAGC
5837897 TTTGGTAAAA
Statistics
Matches: 162, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
82 39 0.24
83 96 0.59
84 27 0.17
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:5837811 original size:124 final size:126
Alignment explanation
Indices: 5837641--5837896 Score: 385
Period size: 124 Copynumber: 2.0 Consensus size: 126
5837631 ATGATTGTAA
*
5837641 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTA-TTTTCAAAAG
* * * *
5837705 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAAGTCGTGGTGCCTTTGTTTAG
65 TCATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTC-AAAGTCATGGAGCCTCTGTTTAG
* *
5837766 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTATTTTCAAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTATTTTCAAAAGT
* *
5837830 CATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
66 CATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCATGGAGCCTCTGTTTAG
5837891 AGGAGC
1 AGGAGC
5837897 TTTGGTAAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
123 5 0.04
124 68 0.57
125 45 0.38
126 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (126 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTATTTTCAAAAGT
CATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCATGGAGCCTCTGTTTAG
Found at i:5837913 original size:1 final size:1
Alignment explanation
Indices: 5837903--5837974 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
5837893 GAGCTTTGGT
* * * ** * * * *
5837903 AAAAACAAAAAAAAACAAAAAACAAAAAACCAAAAACAAAAAACAAAAAAAAAACACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
5837968 TAAAAAA
1 AAAAAAA
5837975 TGACAATGTT
Statistics
Matches: 53, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:5837937 original size:13 final size:12
Alignment explanation
Indices: 5837909--5837967 Score: 64
Period size: 13 Copynumber: 4.6 Consensus size: 12
5837899 TGGTAAAAAC
*
5837909 AAAAAAAAACAAA
1 AAAAAAAAAC-CA
5837922 AAACAAAAAACCA
1 AAA-AAAAAACCA
*
5837935 AAAACAAAAAACA
1 AAAA-AAAAACCA
5837948 AAAAAAAAACACA
1 AAAAAAAAAC-CA
5837961 AAAAAAA
1 AAAAAAA
5837968 TAAAAAATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
12 6 0.15
13 27 0.68
14 7 0.17
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACCA
Found at i:5837939 original size:21 final size:19
Alignment explanation
Indices: 5837909--5837974 Score: 89
Period size: 21 Copynumber: 3.3 Consensus size: 19
5837899 TGGTAAAAAC
5837909 AAAAAAAAACAAAAAACAA
1 AAAAAAAAACAAAAAACAA
5837928 AAAACCAAAAACAAAAAACAA
1 AAAA--AAAAACAAAAAACAA
5837949 AAAAAAAACACAAAAAA-AA
1 AAAAAAAA-ACAAAAAACAA
5837968 TAAAAAA
1 -AAAAAA
5837975 TGACAATGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.23
20 14 0.33
21 19 0.44
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (19 bp):
AAAAAAAAACAAAAAACAA
Found at i:5837975 original size:7 final size:7
Alignment explanation
Indices: 5837912--5837965 Score: 83
Period size: 7 Copynumber: 7.9 Consensus size: 7
5837902 TAAAAACAAA
5837912 AAAAAAC
1 AAAAAAC
5837919 AAAAAAC
1 AAAAAAC
5837926 AAAAAAC
1 AAAAAAC
*
5837933 CAAAAAC
1 AAAAAAC
5837940 AAAAAAC
1 AAAAAAC
5837947 AAAAAA-
1 AAAAAAC
*
5837953 AAAACAC
1 AAAAAAC
5837960 AAAAAA
1 AAAAAA
5837966 AATAAAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
6 5 0.12
7 37 0.88
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:5838220 original size:21 final size:21
Alignment explanation
Indices: 5838191--5838323 Score: 85
Period size: 21 Copynumber: 6.0 Consensus size: 21
5838181 ATTTTATGAT
5838191 TTTATTATTTATTATTATTATA
1 TTTA-TATTTATTATTATTATA
*
5838213 TGTATATTT-TTACTTATT-TA
1 TTTATATTTATTA-TTATTATA
* *
5838233 TTTATTTATTTATTTTCTGTTAATA
1 TTTA--TATTTATTAT-TATT-ATA
*
5838258 TTTATATGTATT-TTATTTATATAA
1 TTTATATTTATTATTA--T-TAT-A
5838282 TTCTATATTTATTATATATTATA
1 TT-TATATTTATTAT-TATTATA
*
5838305 ATT-TATTTATTATTATTAT
1 TTTATATTTATTATTATTAT
5838324 TTATTATTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 30
0.70 0.06 0.24
Matches are distributed among these distances:
20 14 0.16
21 21 0.24
22 11 0.12
23 17 0.19
24 7 0.08
25 16 0.18
26 1 0.01
27 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTATATTTATTATTATTATA
Found at i:5838235 original size:4 final size:4
Alignment explanation
Indices: 5838191--5838328 Score: 51
Period size: 4 Copynumber: 34.5 Consensus size: 4
5838181 ATTTTATGAT
* *
5838191 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * * *
5838237 TTTA TTTA TTTTC TGTTA -ATA TTTA TATGTA TTTTA TTTA TATA ATTC
1 TTTA TTTA -TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA TTTA TTTA
* *
5838285 TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA TTTA TT
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
5838329 ATTATTTTTC
Statistics
Matches: 101, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
3 24 0.24
4 55 0.54
5 17 0.17
6 4 0.04
7 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:5838280 original size:17 final size:16
Alignment explanation
Indices: 5838256--5838336 Score: 57
Period size: 13 Copynumber: 5.1 Consensus size: 16
5838246 TTTCTGTTAA
*
5838256 TATTTATAT-GTATTT
1 TATTTATATATTATTT
5838271 TATTTATATAATTCTATATT
1 TATTTATAT-A-T-TAT-TT
5838291 TA-TTATATATTATAATT
1 TATTTATATATTAT--TT
5838308 TATTTAT-TATTA--T
1 TATTTATATATTATTT
5838321 TATTTAT-TATTATTT
1 TATTTATATATTATTT
5838336 T
1 T
5838337 TCTTGTAATA
Statistics
Matches: 56, Mismatches: 1, Indels: 18
0.75 0.01 0.24
Matches are distributed among these distances:
13 13 0.23
15 11 0.20
16 3 0.05
17 11 0.20
18 5 0.09
19 9 0.16
20 4 0.07
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (16 bp):
TATTTATATATTATTT
Found at i:5839037 original size:21 final size:21
Alignment explanation
Indices: 5839011--5839056 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
5839001 CGACCTTATT
*
5839011 AAGAAG-AGAAAAGAGAGGAAA
1 AAGAAGAAG-AAAGAGAGAAAA
*
5839032 AAGAAGAAGAGAGAGAGAAAA
1 AAGAAGAAGAAAGAGAGAAAA
5839053 AAGA
1 AAGA
5839057 GCCGTTCTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
AAGAAGAAGAAAGAGAGAAAA
Found at i:5839228 original size:5 final size:5
Alignment explanation
Indices: 5839209--5839242 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
5839199 GCCCCCCTCT
* *
5839209 GAGCC GAGTC GAGCC AAGCC GAGCC GAGCC GAGC
1 GAGCC GAGCC GAGCC GAGCC GAGCC GAGCC GAGC
5839243 TTCCCAAGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.24, C:0.35, G:0.38, T:0.03
Consensus pattern (5 bp):
GAGCC
Found at i:5839358 original size:16 final size:16
Alignment explanation
Indices: 5839336--5839374 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
5839326 TTTTATTTTC
5839336 ATTTATTTGTTTATTT
1 ATTTATTTGTTTATTT
* *
5839352 GTTTATTTGTTTTTTT
1 ATTTATTTGTTTATTT
5839368 ATTTATT
1 ATTTATT
5839375 AGATTAGGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (16 bp):
ATTTATTTGTTTATTT
Found at i:5839417 original size:17 final size:16
Alignment explanation
Indices: 5839383--5839422 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5839373 TTAGATTAGG
*
5839383 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
5839399 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
5839416 TTTATTT
1 TTTATTT
5839423 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:5839429 original size:17 final size:17
Alignment explanation
Indices: 5839409--5839456 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
5839399 TTTATCTTAA
5839409 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
5839425 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
5839443 TTTCTATTTTTATT
1 TTT-TATTTTTATT
5839457 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:5839456 original size:14 final size:14
Alignment explanation
Indices: 5839409--5839466 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5839399 TTTATCTTAA
5839409 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
5839421 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
5839435 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
5839450 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
5839464 TTT
1 TTT
5839467 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:5839471 original size:17 final size:17
Alignment explanation
Indices: 5839432--5839471 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
5839422 TTTGTTTTAC
*
5839432 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
5839449 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
5839463 TTTTCTTTA
1 TTTTCTTTA
5839472 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:5839552 original size:58 final size:57
Alignment explanation
Indices: 5839474--5839767 Score: 417
Period size: 58 Copynumber: 5.0 Consensus size: 57
5839464 TTTCTTTAAA
*
5839474 TAAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCT
***
5839534 TAAAAATAAATTTTCAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
5839592 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTC-AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
5839652 TAAAAATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
5839710 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAA-TATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
5839768 CTACACAAGA
Statistics
Matches: 211, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
57 1 0.00
58 111 0.53
59 48 0.23
60 51 0.24
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (57 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:5839613 original size:118 final size:117
Alignment explanation
Indices: 5839474--5839767 Score: 439
Period size: 118 Copynumber: 2.5 Consensus size: 117
5839464 TTTCTTTAAA
*
5839474 TAAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
5839539 ATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
5839592 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
5839657 ATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
5839710 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
5839768 CTACACAAGA
Statistics
Matches: 159, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
117 47 0.30
118 100 0.63
119 12 0.08
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:5839649 original size:28 final size:28
Alignment explanation
Indices: 5839558--5839649 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
5839548 CAAAAAAGGG
5839558 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
5839586 TTTCCTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
5839617 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
5839646 TTTT
1 TTTT
5839650 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:5840397 original size:26 final size:26
Alignment explanation
Indices: 5840361--5840413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5840351 CCGATCCGAT
*
5840361 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5840387 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5840413 C
1 C
5840414 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5841298 original size:26 final size:26
Alignment explanation
Indices: 5841269--5841321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5841259 CCAGTCCGAT
5841269 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5841295 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5841321 C
1 C
5841322 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5846029 original size:869 final size:866
Alignment explanation
Indices: 5842712--5847869 Score: 6282
Period size: 878 Copynumber: 5.9 Consensus size: 866
5842702 AAGCATACAA
* * * * *
5842712 AGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
*
5842777 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG--GAGAACCTGACCG
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCG
*
5842840 GCGGCATTGGGGTTTCGACGATCAGGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
5842905 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACATCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
5842970 AAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* * *
5843035 TTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** *
5843100 ACAAAAATACAAGGATCAC-ATCTAACAA-TTTGGCACCAAAAATCCTTTCGAAAAAATTTTAAA
389 ACAAAAATACAAGGATCACGA-CTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAA
* ** * * *
5843163 AAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAATATAGAAAACGAGTCGTTTTGCCATGAA
452 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
5843228 ACTTCACGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACA
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
5843292 CGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
5843357 CTCTCTGGCTGGCGTAGTGCCTGCCTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGTCTTAG
647 CTCTCTGGCCGACGTA--G--TG-CT----G---GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5843422 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAGGGTTGCAGTAGCAAGATTGGC
700 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
5843486 AGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGTATCCCGCCCCTCTGTCCGGCTGAGCG
764 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
5843551 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
829 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
5843589 AGTTCATTCCCAATCTAAGGTCGGACCGGACCGATGGTTGCGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * *
5843654 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCG-AGAACCTGACC
* * * * * *
5843719 GACGGCGTTGGGGTTTCAACGATCGGGGGGCCGGGGGGTGTACGGACATGATGTGCGATGGGTGC
130 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
5843784 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** *
5843849 AGAGCATTTGAGATTTTACAATTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
5843914 TTTTGAAATGGTCACATAATCTTGTACACTTTGAGTTTTTACCTGAATTGTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5843979 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCCTTCTG-AAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAA
* ** * * * * *
5844043 ATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAAGGACTCGTCTT-CCTAGGAAA
454 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC-ATGAAA
* *
5844107 CTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACAC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* *
5844172 AGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGACTT-CGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * *
5844236 TCTCTGGCC-AGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTACGCATATGGAGTT
648 TCTCTGGCCGA-CGTAGTGCTGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** *
5844300 CATTCCCACTCTAAGATCAGACTGGAGTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGG
712 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * ** * *
5844365 GGACCCGGCCGATCCTCGGCTTACGCATCTTGCCTCTCTGCCCGGCTGAGCGCCCGCACGCTCGT
777 GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
5844430 TTTGTGGGTTGACTTAGGCATACGG
842 TTCGTGGGTTGACTTAGGCATACGG
* * * *
5844455 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCAGCAGCACATACTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * *
5844520 TGTGCTGGTGCCGTATTTTTCTTCATCTGGGCACCA---TC---GC--CG--GAGAACCTGACCG
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCG
* ** * *
5844575 GCGACATTGGGGTTCCGGTGATTGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCAATGGGTG
131 GCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTG
* *
5844640 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACGTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** * * *
5844705 AAGAGCATTTGAGATTTTACAGGTTTGCTGAAAGTAGCAATTAAAGTGTCTAAAATGGTGACACA
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* *
5844770 TTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
5844835 ACAAAAATACAAGGATCACGTA-TACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTT-AA
389 ACAAAAATACAAGGATCACG-ACTACCAAGTTTGGGGCCAAAACTC-CTTCGAAAAAATTTTAAA
* ** * *
5844898 AAATCCCTAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCACGAA
452 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5844963 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACACGCCATAAAAATGGCATTGGCACA
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* ** *
5845028 CAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCTCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
5845093 CTCTCTGGCCGGCGTAGTGCTCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
647 CTCTCTGGCCGACGTAGTGCTGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * *
5845158 CATTCCCAGTCTAAGATTGGGCTGGACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGG
712 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
** * * *
5845223 GGACCCAACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
777 GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
5845288 TTCATGGGTTGACTTAGGCATACGG
842 TTCGTGGGTTGACTTAGGCATACGG
* * * * *
5845313 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCACATGCTAGGTTCAGGCT
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* *
5845378 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-GAGAACCTGACC
* * * *
5845443 GGCTGCATTAGGGTTCCGATGATCGAGGGGGGCC-GGGGGTGTGCGCACATGATGTACGATGGGT
130 GGCGGCATTGGGGTTCCGACGATC--GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * * * *
5845507 GATGGTACTTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTGGAGAACTTACAGCCCTTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* **
5845572 AAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATGGTAACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
* *
5845637 TTTTTTCAGAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
5845702 AACAAAAATACAAGGATCACGACTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAA
388 AACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA-TTTTAAA
* * * * *
5845767 AAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAA
452 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
5845832 ACTTCATGTGAAGGCTTGAGGGACCATTGTATG-ATTTCACATGCCATAAAAATGGCATTGGCAC
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCAC
* * * * *
5845896 ACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCCATCAATCCACAGCTTGCGCATCCTG
581 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** *
5845961 TCTCTCTGGCCGACGTAGTGCTGGCCCGTCCGCTCATTTCGTCGACTGGCTTTGGCATACGGAGT
646 TCTCTCTGGCCGACGTAGTGCTGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
5846026 TCATTCCCAGTCTAAGAT-AGGACTGGACCCATGGTTGC-ACTAGCAGGATCAGCAGCACGTAGA
711 TCATTCCCAGTCTAAGATCA-GACTGGACCGAGGGTTGCGGC-AGCAGGATCGGCAGCACGCAGA
* * ** *
5846089 GGGGGACTCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCT
774 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
5846154 TGTTTCGTGGGTTGACTTAGGCATACAG
839 CGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * ** * *
5846182 AGTTCATTACCAGTCAAAGCATACGAAGTTCATTCC-CATTCT-AAGATTG-AACCGGAC-TG--
1 AGTTCATTCCCAGTCTAAG-AT-CG--G---A--CCGGA--CTGAGGGTTGCGGCAGCACATGCT
* ** * *
5846241 AGGGTTGCGGTAGCACATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCA
55 A-GGCT-CGG--GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * **
5846306 CCGAGGAACCTGATCGACGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCTTACAT
116 CCGA-GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACAT
* * *
5846370 GATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGA
179 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
5846435 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCGAGTAGCCATTAAAGTGTC
244 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
*
5846500 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAGA-CTTGTACACTTCGTGTTTTTAGCTGAAT
309 TGAAATGGGGACACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
5846564 TTTTTTGTGCATGCCAAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
373 TTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTT
* *
5846629 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAACA-TTTCGAAAATCATGAAAAATAGAAAACG
437 -CGAAAAAATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACG
*
5846693 AGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
500 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5846758 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
565 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5846823 TGGCTTGCGCATCCCGTTTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTACTGGTTTCG
630 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTG---GCCCGCCCG-CT-C--GTTTCG
* * * * * * *
5846888 TCGGTTGGCTTTGGCATACGGAGTTCATTCCC-GATCTAATATCAAACCGGACTGAAGGTTACGG
687 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACTGGACCGAGGGTTGCGG
* * * * * * * * * *
5846952 CAGCAGGATTGACAGCACGTAGAGGGGGACCCAGCCGATCCCCAGCTTGTGCATCTCACCTCTTT
751 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
5847017 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGATGACTTAGGCATACGTAGTTCATTCCTAGT
816 GGCCGGCTGAGCGCCCGCACGCTCGTTTC----G-TG-----GG--T---T-G---A---C---T
*
5847082 CTAAGCATACGG
856 -TAGGCATACGG
* * * * * *
5847094 AGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCGGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* ** * * * *
5847159 CGTGCTGGTGGTGCATTTTTCTTCGTCGGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTAAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCG-CCGAGAACCTGAC
* *
5847224 CAGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGGCACATGATGTGCGATGG
129 CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGC-GCACATGATGTGCGATGG
* *
5847289 GTGCTTTGGTACTTGG-CCTTTTATT-G-CCCCTATCCCTCATCTAAACCCTTGAGAACTCACAC
191 GTGC--TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAA-CCTCGAGAACTCACAC
*
5847351 CCCCTTAAAG-GCA-TTGAGA-TTTACAGGCTTTGTTTTGCCAGTAGCAATTAATAAAGTGTCTG
252 CCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTG--CTGCCAGTAGCAA-T--TAAAGTGTCTG
* *
5847413 AAATGGGGACAAACTTTTTT-AAATGGGTCACAAAAATGTTATACACTTCGAGTTTTTAGCTGAA
311 AAATGGGGAC--ACTTTTTTCAAAT-GGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *** **
5847477 TTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTGTATAGCTGAAACTCCTT
372 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTT
* *
5847542 CTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGA
437 C-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
5847607 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
501 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * *
5847672 AAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCAT
566 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
5847737 GGCTTGCGCATCCCATCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCTT
631 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTG---GCCCG----CCCGCTCGTTTCGT
* * * *
5847802 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GAACCGGACCGAGGGTTACGAC
688 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGC
5847866 AGCA
752 AGCA
5847870 CATGCTGGGC
Statistics
Matches: 3728, Mismatches: 423, Indels: 224
0.85 0.10 0.05
Matches are distributed among these distances:
855 35 0.01
856 5 0.00
857 411 0.11
858 306 0.08
860 2 0.00
861 1 0.00
863 2 0.00
864 2 0.00
866 265 0.07
867 11 0.00
868 255 0.07
869 415 0.11
870 2 0.00
871 9 0.00
873 2 0.00
874 3 0.00
875 4 0.00
876 14 0.00
877 334 0.09
878 671 0.18
879 109 0.03
880 32 0.01
882 8 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 132 0.04
887 2 0.00
890 1 0.00
891 2 0.00
896 2 0.00
898 1 0.00
901 1 0.00
902 2 0.00
903 34 0.01
904 39 0.01
905 39 0.01
906 38 0.01
907 26 0.01
908 47 0.01
909 11 0.00
910 2 0.00
911 24 0.01
912 31 0.01
913 337 0.09
914 49 0.01
915 1 0.00
916 1 0.00
917 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCG
GCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCTGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGG
Found at i:5846774 original size:878 final size:881
Alignment explanation
Indices: 5845380--5847869 Score: 3144
Period size: 913 Copynumber: 2.8 Consensus size: 881
5845370 TTCAGGCTTG
* *
5845380 TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC-AGAGAACCTGACCG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAGAGAACCTGAACG
* * * *
5845444 GCTGCATTAGGGTTCCGATGATCGAGGGGGGCC-GGGGGTGTGCGCACATGATGTACGATGGGTG
66 ACGGCATTAGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * * *
5845508 ATGGTACTTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTGGAGAACTTACAGCCCTTTA
130 CTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* **
5845573 AAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATGGTAACACT
194 AAGAGCATTTGAGATTTTACAGGTTTGTTG-CAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* *
5845638 TTTTTCAGAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
258 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
5845703 ACAAAAATACAAGGATCACGACTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAA
323 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * * * *
5845768 AATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAA
388 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
5845833 CTTCATGTGAAGGCTTGAGGGACCATTGTATG-ATTTCACATGCCATAAAAATGGCATTGGCACA
453 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCACA
* * * ** *
5845897 CAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCCATCAATCCACAGCTTGCGCATCCTGT
517 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
* *
5845962 CTCTCTGGCCGACGTAGTGCTG-GCCCGTCCG-CT-C-ATTTCGTCGACTGGCTTTGGCATACGG
582 CTCTCTGGCCGACGTAGTGCCGCGCCCGCCCGCCTACGATTTCGTCGACTGGCTTTGGCATACGG
* * * *
5846023 AGTTCATTCCC-AGTCTAAGAT-AGGACTGGACCCATGGTTGC-ACTAGCAGGATCAG-CAGCAC
647 AGTTCATTCCCGA-TCTAAGATCA-AACCGGACCCAAGGTTACGAC-AGCAGGAT-AGACAGCAC
* * *
5846084 GTAGAGGGGGACTC-GACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCG
708 GTAGAGGGGGACCCAG-CCGATCCCCAGCTTATGCATCCCACCCCTCTGGCAGGCTGAGCGCCCG
** * *
5846148 CACGCTTGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTACC-AGTCAAAGCATACGAAGT
772 CACGCTCATTTCATGGGATGACTTAGGCATAC-GTAGTTCATT-CCTAGTCAAAGCATACGAAGT
* * * * *
5846211 TCATTCCCATTCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCACA
835 TCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACA
** * *
5846258 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAG-GAACCTGATCG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAGAGAACCTGAACG
** *
5846322 ACGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCTTACATGATGTGCGATGCGTGC
66 ACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
5846386 TGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
131 TGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* *
5846451 AGAGCATTTGAGATTTTATAGGTTTGTTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
195 AGAGCATTTGAGATTTTACAGGTTTGTTGC-AGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
*
5846516 TTTTCAAATGGTCACAAAGA-CTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCA
259 TTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
5846580 AAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAA
323 ACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* *
5846645 AAATCCCGAACCGCAAAACA-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGA
387 AAATCCCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
5846709 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
451 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
5846774 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
516 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* * * * **
5846839 TTTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTACTGGTTTCGTCGGTTGGCTTTGGCA
581 TCTCTCTGGCCGACGTAGTG-CCG--CGCCCGCCCGCCTAC-GATTTCGTCGACTGGCTTTGGCA
* ** * *
5846904 TACGGAGTTCATTCCCGATCTAATATCAAACCGGACTGAAGGTTACGGCAGCAGGATTGACAGCA
642 TACGGAGTTCATTCCCGATCTAAGATCAAACCGGACCCAAGGTTACGACAGCAGGATAGACAGCA
* * * * *
5846969 CGTAGAGGGGGACCCAGCCGATCCCCAGCTTGTGCATCTCACCTCTTTGGCCGGCTGAGCGCCCG
707 CGTAGAGGGGGACCCAGCCGATCCCCAGCTTATGCATCCCACCCCTCTGGCAGGCTGAGCGCCCG
* *
5847034 CACGCTCATTTCATGGGATGACTTAGGCATACGTAGTTCATTCCTAGTCTAAGCATACGGAGTTC
772 CACGCTCATTTCATGGGATGACTTAGGCATACGTAGTTCATTCCTAGTCAAAGCATACGAAGTTC
* * *
5847099 ATTCCTAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCGGCACA
837 ATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACA
*
5847144 TGCTGGGCTCGAGCACGTGCTGGTGGTGCATTTTTCTTCGTCGGGGGCACCATCGCCAGAGCATC
1 TGCT-GG-T---G--C---C-------GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATC
* *
5847209 GTCG-GAGAACCT-AACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGG
48 GCCGAGAGAACCTGAACGA-CGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGC-G
*
5847272 CACATGATGTGCGATGGGTGCTTTGGTACTTGG-CCTTTTATTG-CCCCTATCCCTCATCTAAAC
110 CACATGATGTGCGATGGGTGC--TGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATC-AAA-
5847335 CCTTGAGAACTCACACCCCCTTAAAG-GCA-TTGAGA-TTTACAGGCTTTGTTTTGCCAGTAGCA
171 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTG--TTG-CAGTAGCA
* *
5847397 ATTAATAAAGTGTCTGAAATGGGGACAAACTTTTTT-AAATGGGTCACAAAAATGTTATACACTT
232 A-T--TAAAGTGTCTGAAATGGGGAC--ACTTTTTTCAAAT-GGTCAC-AAAATCTTGTACACTT
* *
5847461 CGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTGT
290 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*** ** ** *
5847526 ATAGCTGAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCAT
355 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
5847591 GAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
420 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
5847656 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTAC
485 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5847721 CACCCTATCGAGCCATGGCTTGCGCATCCCATCTCTCTGGCCGACGCAGTGCC-CGCCCGCCCGC
550 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCGCCCGCCCGC
* * * ** * * *
5847785 CCACCCGTTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCG
615 CTA--CG---ATTTCGTCGACTGGCTTTGGCATACGGAGTTCATTCCCGATCTAAGATCAAACCG
* *
5847850 GACCGAGGGTTACGACAGCA
675 GACCCAAGGTTACGACAGCA
5847870 CATGCTGGGC
Statistics
Matches: 1405, Mismatches: 140, Indels: 99
0.85 0.09 0.06
Matches are distributed among these distances:
876 9 0.01
877 222 0.16
878 303 0.22
879 9 0.01
882 8 0.01
883 2 0.00
884 1 0.00
885 4 0.00
886 217 0.15
887 6 0.00
888 1 0.00
891 1 0.00
893 1 0.00
896 1 0.00
903 19 0.01
904 34 0.02
905 30 0.02
906 35 0.02
907 26 0.02
908 44 0.03
909 25 0.02
910 1 0.00
911 22 0.02
912 7 0.00
913 328 0.23
914 49 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (881 bp):
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAGAGAACCTGAACG
ACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGTTGCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCGCGCCCGCCCGCCTACGATTTCGTCGACTGGCTTTGGCATACGGAGTT
CATTCCCGATCTAAGATCAAACCGGACCCAAGGTTACGACAGCAGGATAGACAGCACGTAGAGGG
GGACCCAGCCGATCCCCAGCTTATGCATCCCACCCCTCTGGCAGGCTGAGCGCCCGCACGCTCAT
TTCATGGGATGACTTAGGCATACGTAGTTCATTCCTAGTCAAAGCATACGAAGTTCATTCCCAGT
CTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACA
Found at i:5847090 original size:26 final size:26
Alignment explanation
Indices: 5847060--5847112 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5847050 GATGACTTAG
*
5847060 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5847086 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5847112 G
1 G
5847113 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5848743 original size:26 final size:26
Alignment explanation
Indices: 5848692--5848744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5848682 GTTGACTTAG
*
5848692 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
* *
5848718 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
5848744 G
1 G
5848745 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:5849679 original size:26 final size:26
Alignment explanation
Indices: 5849643--5849695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5849633 GTTGACTTAG
5849643 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5849669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5849695 G
1 G
5849696 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5850587 original size:26 final size:26
Alignment explanation
Indices: 5850536--5850588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5850526 GTTGACTTAG
*
5850536 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
* *
5850562 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
5850588 G
1 G
5850589 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:5851523 original size:26 final size:26
Alignment explanation
Indices: 5851487--5851539 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5851477 GTTGACTTAG
5851487 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5851513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5851539 G
1 G
5851540 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5853103 original size:26 final size:26
Alignment explanation
Indices: 5853067--5853118 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5853057 GTTGCTTAGA
*
5853067 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
*
5853093 CATATGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
5853119 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Done.