Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 51 of 120
Found at i:5854150 original size:26 final size:26
Alignment explanation
Indices: 5854120--5854172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5854110 GTTGACTTAG
5854120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5854146 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5854172 G
1 G
5854173 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5855042 original size:26 final size:26
Alignment explanation
Indices: 5855012--5855064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5855002 GTTAACTTAG
*
5855012 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
**
5855038 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5855064 G
1 G
5855065 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5855667 original size:892 final size:890
Alignment explanation
Indices: 5853926--5857409 Score: 4764
Period size: 892 Copynumber: 3.9 Consensus size: 890
5853916 TCGCCCGCCC
* *
5853926 GCCC-CCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCC-GATCTAAGA
1 GCCCGCCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGA
* * * * * *
5853989 TCGGACCAGACCGAGGGTTGCTGTAGTAGGATCGGCAGCACGCAGAGGGCGACCCGATCAATCCC
65 TCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGATCGATCCC
* * *
5854054 CGGCTTGCGCATCCCGCCCCTCTTGACGGCTGAGCGCCCGCACGCTCATTTCATCAGTTGACTTA
130 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACTTA
* *
5854119 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
195 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA
*
5854184 CAGAGGTTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCG-CCGA
260 CAGAGGTTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCCG-
* * *
5854248 GGCACCATCGTGGGAGCATCGTCGGAGAACCTGACCGACGGTATTGAGGTTTCGACGATCGGGGA
323 GGCACCATCGCGGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGG-
* * *
5854313 GGCC-GTGGGGTGTGCACACATGATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCCCCC
387 GGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
5854377 TATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
452 TATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
5854442 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
5854507 ACTTCGAGTTTTTAAATGAATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCTAAGTT
582 ACTTCGAGTTTTTAAATGAATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCTAAGTT
*
5854572 TGGGGCCAAAACAACTTCCGAAAAAATTTTAAGAAACCCCGAACCACAAAAAGTTTCAAAAATCA
647 TGGGGCCAAAA-AACTTCCGAAAAAATTTTAAAAAACCCCGAACCACAAAAAGTTTCAAAAATCA
*
5854637 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTAT
711 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
5854702 GAATTTAGAAGCCATAAAAATGGCATTGTCGTGCAGAAACATGAAGATGTGCCTACACCCACCTA
776 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
5854767 CGACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCCGTGTAAT
841 CGACCCTATCGATCCACGACTT-CGCATCCCGTCTCTCTGGCCCGCGTAGT
* * * *
5854818 GCCCGCCT-GCCCGCTCGTTTCATCAGTCGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGAT
1 GCCCGCCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
5854882 CGGACCGGACCAAGGGTTACGGTAGTAGGATCGATAGCACGTAGAGGGTGACCC-AACTGATCGC
66 CGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGATC-GATCCC
* * * *
5854946 TGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTAACTTA
130 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACTTA
*
5855011 GGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA
195 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA
* * * * *
5855076 CAGAGGTTTATGACAGCACATGCTGGACTCAGGCATGTGCTGGTGACGCATTTTTCTTTGCCCGG
260 CAGAGGTTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCCGG
* * * *
5855141 GCACCATCGCGAGAGCATCGCCGGAGAACCTGACCGACGGTATTGAGGTTTTGGCGATCGGGGGG
324 GCACCATCGCGGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGGGG
*
5855206 CCGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
389 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
5855271 TCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
454 TCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5855336 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
519 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
5855401 TTCGAGTTTTTAAATGAATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCTAAGTTTG
584 TTCGAGTTTTTAAATGAATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCTAAGTTTG
*
5855466 GGGCCAAAACAACTTCCGAAAAAATTTTAAGAAACCCCGAACCACAAAAAGTTTCAAAAATCATG
649 GGGCCAAAA-AACTTCCGAAAAAATTTTAAAAAACCCCGAACCACAAAAAGTTTCAAAAATCATG
* *
5855531 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGATCATTGTATGA
713 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5855596 ATTTAGATGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
778 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACG
* * *
5855661 ACCCTATCAATCCACGACTTACGCATCCCGTCTCTTTGGCCGGCGTAGT
843 ACCCTATCGATCCACGACTT-CGCATCCCGTCTCTCTGGCCCGCGTAGT
* * * *
5855710 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGTGTTCATTCCCAGTATAA
1 GCCCGCCT---CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
5855775 GATTGGACCGGGCCGAGGGTTGTTGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGACCGATC
63 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGATCGATC
* * * * * * * *
5855840 CCCGGCTTGCGCATTCCG-CTCTTTGGCTGGATGAGCGCCCGTACGCTCATTTCGTCGGTTGACC
128 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACT
* * *
5855904 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCG
193 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCG
* * * * *
5855969 GATAGAGGTTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCG
258 GACAGAGGTTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCC
* * *
5856034 GGGCACCATCGCGGGAGCATCGCAGGAGAACCTGACAGGCGGCATTGAGGTTTCGACGATCGGGG
322 GGGCACCATCGCGGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATC-GGG
* * *
5856099 GGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
386 GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
5856164 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
451 CTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
5856229 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TGTAT
516 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGT
* * * * **
5856293 ACACTTCGATTTTTTAGATGAAATTTTT-TGTGCATGCCAACAAAAATACAAGAATCATGTCTAC
580 ACACTTCGAGTTTTTAAATG-AATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCT--
* * * * * ** * *
5856357 CAAGTTTGAGGACAAAAATCATTCCAAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGTTTTAA
642 -AAGTTTGGGGCCAAAAAAC-TTCCGAAAAAATTTTAAAAAACCCCGAACCACAAAAAGTTTCAA
* * *
5856422 AAATCGTGAAAAATAGAAAACGAGACGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
705 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5856487 TTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGTGCCTAAACC
770 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
*
5856552 CACCTATGACCCTATCGATCCACGACTTCGCATCCCGTCTCTCTGG-CCGACGTAGT
835 CACCTACGACCCTATCGATCCACGACTTCGCATCCCGTCTCTCTGGCCCG-CGTAGT
* * * *
5856608 GCCCG-CTCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGATCATTTCCAGTCTAAGAT
1 GCCCGCCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
5856672 CAGACCAGATCGAGGGTTGTGGCAGCAGAATCGGCAACACGCAGAGGGGGACCCGATCGATCCCC
66 CGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGATCGATCCCC
* * * * *
5856737 GACTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
131 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACTTAG
* * * *
5856801 GAATACGAAGTTCATTCCC--TGT---C-TA---AG----------ATC--GGATCGGACC-G--
196 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
* * * * * * * *
5856842 AG-GG-TTGCAGCAGCACATTC-GGGCTTGGGCATGTGCTAGTGCTGTATTTTTCTTTGCCGGGG
261 AGAGGTTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGCCCGGG
* * * * * * * **
5856904 CACCATCGTC-GGAGGATCACCAGAGAACCTGACCGACTGCAATGGGGTTCCGGTGATCGGGGGT
325 CACCATCG-CGGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGGG-
*
5856968 GCCGGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
388 GCC-GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
5857033 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGC
452 TATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
5857098 TGCGAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTAC
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
5857163 ACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCGAA-AAAAATACAAGGATCACACCTACC
582 ACTTCGAGTTTTTAAATGAA-TTTTTCTGTGCATG-CGAACAAAAATACAAGGATCACA--T-CT
* * * *
5857227 AAGTTTGGGGCCAAAAATCCTTCCTAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAA
642 AAGTTTGGGGCCAAAAA-ACTTCCGAAAAAATTTTAAAAAACCCCGAACCACAAAAAGTTTCAAA
* *
5857292 AATCATGAAAAATAGAAATCGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
706 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
5857357 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
5857410 CAGACTGGAC
Statistics
Matches: 2321, Mismatches: 240, Indels: 85
0.88 0.09 0.03
Matches are distributed among these distances:
866 6 0.00
867 82 0.04
868 213 0.09
869 192 0.08
870 6 0.00
871 1 0.00
872 2 0.00
873 8 0.00
875 2 0.00
885 2 0.00
888 2 0.00
889 1 0.00
891 6 0.00
892 823 0.35
893 7 0.00
894 167 0.07
895 214 0.09
896 346 0.15
897 13 0.01
898 30 0.01
899 198 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
GCCCGCCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGTGACCCGATCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
AGAGGTTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGCCCGGGC
ACCATCGCGGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGGGGGGCC
GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAAATGAATTTTTCTGTGCATGCGAACAAAAATACAAGGATCACATCTAAGTTTGGG
GCCAAAAAACTTCCGAAAAAATTTTAAAAAACCCCGAACCACAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACC
CTATCGATCCACGACTTCGCATCCCGTCTCTCTGGCCCGCGTAGT
Found at i:5855936 original size:26 final size:26
Alignment explanation
Indices: 5855907--5855959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5855897 GTTGACCTAG
5855907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5855933 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5855959 G
1 G
5855960 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5856855 original size:158 final size:161
Alignment explanation
Indices: 5856559--5856856 Score: 354
Period size: 158 Copynumber: 1.9 Consensus size: 161
5856549 ACCCACCTAT
* * * * *
5856559 GACCCTATCGATCCACGACTTCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCTGCTC
1 GACCCGATCGATCCACGACTTCGCATCCCGCCCCTCTGGCCGACGTAGCGCCCGCTC-ACTGCTC
* * * * *
5856624 ATTTCGTCGGTTGGCTTAGGCATACGGAGATCATTTCCAGTCTAAGATCAGACCAGATCGAGGGT
65 ATTTCGTCGGTTGACTTAGGAATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
**
5856689 TGTGGCAGCAGAATCGGCAACACGCAGAGGGG
130 TGCAGCAGCAGAATCGGCAACACGCAGAGGGG
*
5856721 GACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG-C-TGAGCGCCCG-T-AC-GCT
1 GACCCGATCGATCCACGACTT-CGCATCCCGCCCCTCTGGCCGACGT-AGCGCCCGCTCACTGCT
* * * * * * *
5856781 CGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCTGTCTAAGATCGGATCGGACCGAGGG
64 CATTTCGTCGGTTGACTTAGGAATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
5856846 TTGCAGCAGCA
129 TTGCAGCAGCA
5856857 CATTCGGGCT
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
158 65 0.57
159 1 0.01
161 2 0.02
162 27 0.24
163 19 0.17
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (161 bp):
GACCCGATCGATCCACGACTTCGCATCCCGCCCCTCTGGCCGACGTAGCGCCCGCTCACTGCTCA
TTTCGTCGGTTGACTTAGGAATACGAAGATCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCAGCAGCAGAATCGGCAACACGCAGAGGGG
Found at i:5858550 original size:31 final size:31
Alignment explanation
Indices: 5858515--5858582 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
5858505 CTAAAATGGG
5858515 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGT
5858546 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGT
5858577 ACACTT
1 ACACTT
5858583 CAAGGTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (31 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:5859304 original size:26 final size:26
Alignment explanation
Indices: 5859268--5859319 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5859258 GTTGACTTAG
5859268 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5859294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5859320 TATTGGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5860778 original size:900 final size:899
Alignment explanation
Indices: 5858644--5864810 Score: 7690
Period size: 900 Copynumber: 6.9 Consensus size: 899
5858634 TTAAACCTTG
* *
5858644 AGAACTCAAACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
5858709 GTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
5858774 TTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTGTACCAAGTTTGGGCCCAAAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * ** * * * *
5858839 TTC-AAAAATATTTT-AAAAATCTCGAACTGTAAAAAGTTTTGAAAATCCTGAAAATTATAAAAT
196 TCCGAAAAA-ATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
5858902 GAGTCGTCTTGCCATGAAACTTCACATGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * **
5858966 AAAAATGAAATTGGCATGCAGAAATATGAAGATAAGCCTAAACCCACCTACCACCCTATCGATCC
325 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
5859031 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCACCCGCCCGCTTG-TTC
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-C-CGCCCGCCCGCCCGCTCGTTTC
* * * *
5859095 TGTCAGTTGGCTTAGGCATACACAGTTCATTCCCAGTCCAAGATCAGACC-GAATCGAGGGTTGC
453 -GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC
* * * * * * * * * *
5859159 AGCAGCAGGATTGACAGCATGCAGA-GGGGACCCGGCTGATCGCCGACTTGCGTATCTCACCCCT
516 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCT
* *
5859223 TTGGCCGGCTGAGCT-CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
580 CTGGCCGGCTGAG-TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
* * * * *
5859287 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATTGGATCAGACCGAGGGTTGCTG-TAGCAA
644 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GACAGCAC
* * ** * *
5859351 ATACTAGGCTCAGGCATGTGCTGGTGCCACATTTTTC-TCTGTCGAGGCACCATCACCGGAGCAT
708 ATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGGCACCATCACTGGAGCAT
* * * * * * *
5859415 CACCAGAGAACCTGACCGACGACACTGGGGTTCCGACGATCGGGGCGGTCGGGGGGTGTGCACAC
772 CACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCAGGGGGTGTGCGCAC
* * * ** *
5859480 ATGATGTCCGATGGGTGCTGGTTCTAGGCCCTTATATTGGTACCCTATCCCTCATCAAACCTCG
836 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* * *
5859544 TGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
5859609 GTCTAAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
5859674 ATGTTTTTATGCCTGCCAACAAAAATACAGGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*** * * * * * *
5859739 TTTTAAAAAATTGTAAAAAATCTCAAACCGTAAAAAGTTTGAAAAATTGTGAGAAATAGAAAACG
196 TCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
5859804 GGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
261 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5859869 AAAATGGCATTGGAATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCA
326 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5859934 CGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCACTCGCTCGCCCGCCCACTCGTTTTG
391 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-C-CGCCCGCCCGCCCGCTCGTTTCG
** * * *
5859999 TTAGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCTGACCAGACCAAGGGTTGCGGC
454 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* *
5860064 AGCAGGATCGGCAGCACGTAGAGGGGGACCCGACAGATCCCCGGCTT-CGCATCCTGCCCCTCTG
519 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
5860128 GCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGGATACAAAGTTCATTCCCAGTC
583 GCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * * * *
5860193 CAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGATAGCACATGCT
648 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT
* * * ** **
5860258 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGAACCATTGCTGGAGCATCGTCGG
713 AGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACTGGAGCATCACCGG
* * * *
5860323 AGAACTTGACCGGCGGCATTGTGGTTCCGACGATTGGGGGG-CAGGGCGGTGTGCGTACATGATG
778 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGG-GGTGTGCGCACATGATG
* * * *
5860387 TGTGTTGGGTGCTGGTACTTGGCCCCTATATTTGCCCCCTATCCCTCATCAAACCTCA
842 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* *
5860445 AGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTATCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
5860509 GTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGACG-TTTTAGCTG
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTG
5860573 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATC
130 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TC
* *
5860638 C-TCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATTGTGAAAAATATAAAA
194 CTTCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
5860702 CGGGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
259 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
5860767 TAAAAATGGCATTTGCATGCAAAAATATGAAGATATGCCTGAACCCACCTACCACCCTATCGATC
324 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
5860832 CATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT------GCCCGCCCGCCCGCTCGTTTCG
389 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCG
* ** ** *
5860891 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTATGGT
454 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * * ** * * *
5860956 AGCGGGATCGGTACCACGCAGAGGGGGAACTGGCCAATCCCCGGCTTGTGCATCCCGCCCCTCTG
519 AGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
5861021 GCCGGCTGAGTGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
583 GCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * * * *
5861086 TAAGCATACGGAGTTCATTCCCAGTATAAAATTGGACCGGACCGAGGGTTGCGGCAGAACATGCT
648 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT
* * * *** ** *
5861151 AGGCTCGGGCATGTGCTAGTGTCATATTTTTCTTTGTCGGGGCACCATCACCAGAGCATCGCCGG
713 AGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACTGGAGCATCACCGG
* *
5861216 AGAACCTGACCGGTGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
778 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCAGGGGGTGTGCGCACATGATG
* * *
5861280 TGCAATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCC
842 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
*
5861338 AGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
5861403 GTCCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGCTTTTTAGCTG
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTG
* * * * * *
5861468 AATTTTTTTGTGCATGCCAAAAAAAATAAAAGTATCATGTATACCAAGTTTGGGGCCAAAAATCC
130 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
5861533 TTCCCAAAAAATTTTAAAAAATCCCGAACCA-TAAAAAGTTTTAAAAATCGTAAAAAATAGAAAA
195 TTCCGAAAAAATTTTAAAAAATCTCGAA-CAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
5861597 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
259 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
5861662 TAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
324 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
5861727 CACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTG--CCCGCCCGCCCGCCCGCTCGTTTCG
389 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCG
* * * ** * *
5861790 TCGGTTGTC-TAGGGCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCATACTGAGCATTACA
454 TCGGTTGGCTTA-GGCATACA-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
** * * * * * * **
5861853 GCAGCAGGATCGATAGCACACAGAGAGGGACCCGGTCGATGCCTGGCTTGCGCGTTTCGCCCCTC
517 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
5861918 TGGCCTGCTGAGTGCTCGAACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAG
581 TGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
**
5861983 TCTAAG-AT-C-G-G---------A---T----T--G----GACCGAGGGTTGTAACAGCACATG
646 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
* * * * **
5862022 CTGGGCTAGGGCATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACTGGAGCATCGTC
711 CTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACTGGAGCATCACC
* * * * *
5862087 GGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCGGGGGGGCC-GGGGGTCTGCGCGCACTT
776 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGG--TGTGCGCACAT
* *
5862151 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCC
838 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* * *
5862213 AGAACACACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
5862278 GTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
5862343 ATTTTTTTGTGCATGCCAA-AAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
5862407 TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAATG
196 TCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
5862472 AGTCGTCTTGCAATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
261 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5862537 AAAATGGAATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
326 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5862602 CGGCTTGCGTATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCG
391 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * * *
5862667 TCGGTTGGGTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCAAGGGTTACGGT
454 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * ** * * * **
5862732 AGCAGGATTGGCAGCATGCAGAGGGGGAACTAGCCGATCCCCGACTTGTGCATCCCGCCCCTCCA
519 AGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
5862797 ACTGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
583 GCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
** * * *
5862862 TAAGCATATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTG-TAGCAGCACATGC
648 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGC
* * * * *
5862926 TGGGCTCGTGCATGTGCTGGTGCTACATTTTTCTTCACCGGGGCACCATC-GTCGGAGCTTCACC
712 TAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACT-GGAGCATCACC
* * ** *
5862990 AGAGAACCTGACCGGCAGTGTTGGGGTTCC-AGTGATCGGGGGGACCGGGGGACCGGGGGGCTGT
776 GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGG-CC-----A----GGGG--GT
** *
5863054 GTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCA
828 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
5863119 AACCTCA
893 AACCTCA
* * *
5863126 AGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
5863191 GTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
5863256 ATTTTTTTTTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTTCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
5863320 TCCGAAAAAAATTTAAAAAATCCCAAACAGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
196 TCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * * *
5863385 AATCATCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGAATGAATTTACAAGCCATA
261 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5863450 AAAATGGCATTGGCATGCAATAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
326 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
5863515 CGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTG--CCCGCCCGTCCGCCAGCTCGTTTCATT
391 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * **
5863578 GGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTGTGATAG
456 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * ** *
5863643 CAGGATTGGCAACACGCAGAGGGAGACTCGATCGATCCTTGGCTTACGCATCCCGCCCCTCTGGC
521 CAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * ** *
5863708 CGGCTGAGTGCTCGCACGCTCCTTTCGTGGATTGACTTAGGCATATGGAGTTCATTCACAGTCTA
585 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * ** * * *
5863773 AGCGTACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTAT
650 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAG
* * ** * * *
5863838 GCCCGGGCATGTACTGGTGCTGCATTTTTCTTCACCGTGGCACCATC-GTCGGAGCATCATCGGA
715 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACT-GGAGCATCACCGGA
* * * * * *
5863902 GAACTTGACTGGTGGCATTGGGGTTCCAATGATCGAGGGGGCCGACAGGGGTGTGCGCACATGAT
779 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-A-GGGGGTGTGCGCACATGAT
* * *
5863967 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCG
841 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* *
5864026 AGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
5864091 GTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGAACACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
5864156 CTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * ** *
5864221 TCCGAAAAAATTCTAAAAAATCAT-GAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAAC
196 TCCGAAAAAATTTTAAAAAATC-TCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
5864285 GAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * * *
5864350 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTATACCAACCTACTACCCTATCGATCC
325 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*** * *
5864415 ACGGCTTGCGCATCCCGTCTCTCTGGCCGATATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTT
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCGCCCGCCCGCTCGTTTC
* * *
5864480 GTCGATTGGCTTCGGCATACAGAGTTCATT-CCAGTCCTAAGATCGGACCAGACCGAGGGTTGCG
453 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCG
* ** * * *
5864544 GCAGCATGATCGATAGCACGCAGAGGGGGACCCGATCGAT-CCCTGCTTGTGCATCCCGTCCCTC
517 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
5864608 TGGCCGGCTGAGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAG
581 TGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
* **
5864673 TCTAAGCATACGGAGTTCATTCCCAGTCTAAG-T-TG----GACCGAGGGTTGCGGTAGCACATG
646 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
* * * * * *
5864732 CT-GGATCGGGCATGTACTGGTGTCGCATTTTTCTTCACCGGGGCACCATC-GTCAGAGCATCAC
711 CTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACT-GGAGCATCAC
* *
5864795 CGAAGAACCTGTCCGG
775 CGGAGAACCTGACCGG
5864811 TAGTGTCATA
Statistics
Matches: 4578, Mismatches: 596, Indels: 189
0.85 0.11 0.04
Matches are distributed among these distances:
872 1 0.00
873 359 0.08
874 39 0.01
875 178 0.04
877 177 0.04
878 6 0.00
879 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
886 1 0.00
890 1 0.00
892 109 0.02
893 295 0.06
894 107 0.02
895 277 0.06
896 3 0.00
897 67 0.01
898 30 0.01
899 184 0.04
900 770 0.17
901 399 0.09
902 439 0.10
903 132 0.03
904 110 0.02
905 103 0.02
908 4 0.00
909 318 0.07
910 6 0.00
913 458 0.10
915 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
CAGGATCGGCAGCACGCAGAGGGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACTGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
Found at i:5862868 original size:26 final size:26
Alignment explanation
Indices: 5862839--5862891 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5862829 GTTGACTTAG
*
5862839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5862865 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5862891 G
1 G
5862892 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5864682 original size:26 final size:26
Alignment explanation
Indices: 5864652--5864704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5864642 GTTGACTTAG
*
5864652 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5864678 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5864704 G
1 G
5864705 TTGGACCGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5865408 original size:58 final size:57
Alignment explanation
Indices: 5865293--5865586 Score: 410
Period size: 58 Copynumber: 5.0 Consensus size: 57
5865283 TCTTGTGTAG
*
5865293 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTGGAAATTTATTTTTAA
5865352 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTGGAAATTTATTTTTAA
* **
5865410 -GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
*** *
5865469 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAATTTATTTTTAA
5865527 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTCTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT-TGGAAA-TTT-ATTTTTA
5865587 TTTAAAGAAA
Statistics
Matches: 211, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
57 44 0.21
58 71 0.34
59 45 0.21
60 44 0.21
61 7 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:5865517 original size:117 final size:117
Alignment explanation
Indices: 5865293--5865583 Score: 426
Period size: 117 Copynumber: 2.5 Consensus size: 117
5865283 TCTTGTGTAG
* **
5865293 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
* * *
5865357 ATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
*
5865410 -GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
*
5865474 ATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTTTAA
* *
5865527 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTCTGGAAATTTTGATTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT-TTGAAAATTTGATTT
5865584 TTATTTAAAG
Statistics
Matches: 158, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
115 2 0.01
116 45 0.28
117 59 0.37
118 39 0.25
119 13 0.08
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAA
TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
Found at i:5865613 original size:14 final size:14
Alignment explanation
Indices: 5865594--5865651 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5865584 TTATTTAAAG
*
5865594 AAAATAGAATAATA
1 AAAATAGAAAAATA
5865608 AAAATAGAAAAATAA
1 AAAATAGAAAAAT-A
* * *
5865623 AAAAAAGTAAAACA
1 AAAATAGAAAAATA
5865637 AAAAT--AAAAATA
1 AAAATAGAAAAATA
5865649 AAA
1 AAA
5865652 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5865621 original size:17 final size:17
Alignment explanation
Indices: 5865601--5865651 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
5865591 AAGAAAATAG
5865601 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
*
5865618 AATAAAAAAAAGTAAAAC
1 AATAATAAAAA-TAAAAC
*
5865636 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
5865652 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:5865660 original size:17 final size:16
Alignment explanation
Indices: 5865638--5865677 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5865628 AGTAAAACAA
*
5865638 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
5865654 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
5865671 AAATAAA
1 AAATAAA
5865678 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:5865693 original size:4 final size:4
Alignment explanation
Indices: 5865686--5865730 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
5865676 AACCTAATCT
* *
5865686 AATA AATA AATA AATA AATA AACA AATA AATGAA AATA AAAA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT--A AATA AATA AAT
5865731 TTCAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
4 31 0.89
6 4 0.11
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:5866098 original size:20 final size:21
Alignment explanation
Indices: 5866073--5866112 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5866063 GGTTGAAGAT
* *
5866073 TCACCG-GATTCTGGGTTTTG
1 TCACCGCGAATCTAGGTTTTG
5866093 TCACCGCGAATCTAGGTTTT
1 TCACCGCGAATCTAGGTTTT
5866113 CACCGGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.38
Consensus pattern (21 bp):
TCACCGCGAATCTAGGTTTTG
Found at i:5866112 original size:21 final size:20
Alignment explanation
Indices: 5866073--5866120 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
5866063 GGTTGAAGAT
* *
5866073 TCACCGGATTCTGGGTTTTG
1 TCACCGGAATCTAGGTTTTG
5866093 TCACCGCGAATCTAGG-TTT-
1 TCACCG-GAATCTAGGTTTTG
5866112 TCACCGGAA
1 TCACCGGAA
5866121 GTTCACCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.12
19 6 0.24
20 9 0.36
21 7 0.28
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (20 bp):
TCACCGGAATCTAGGTTTTG
Found at i:5866127 original size:11 final size:11
Alignment explanation
Indices: 5866111--5866147 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
5866101 AATCTAGGTT
5866111 TTCACCGGAAG
1 TTCACCGGAAG
*
5866122 TTCACCGAAAG
1 TTCACCGGAAG
*
5866133 TTCACCGGAGG
1 TTCACCGGAAG
5866144 TTCA
1 TTCA
5866148 TCGGTTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:5868224 original size:27 final size:27
Alignment explanation
Indices: 5868186--5868237 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
5868176 TGACTTAGGC
*
5868186 ATACGGAGTTCATTCCCAGTCTAAGCA
1 ATACGGAGTTCATTCCAAGTCTAAGCA
5868213 ATACGGAGTTCATTCCAAGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
5868238 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (27 bp):
ATACGGAGTTCATTCCAAGTCTAAGCA
Found at i:5869912 original size:26 final size:26
Alignment explanation
Indices: 5869876--5869928 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5869866 GTTGACTTAG
5869876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5869902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5869928 G
1 G
5869929 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5871231 original size:928 final size:895
Alignment explanation
Indices: 5869277--5871858 Score: 3300
Period size: 928 Copynumber: 2.9 Consensus size: 895
5869267 ACACCTATTA
* *
5869277 AAAGAG-ATTTGAGA-TTTATAAGTTT-CTGCATAGTAGCCATTAAAGTGTCTGAAATGGGGACA
1 AAAGAGCATTTGAGATTTTACAAGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATGGGGACA
5869339 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
65 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
5869404 C-AAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAA
130 CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
5869467 AAATCTCGAACCGCAAAAAGTTTCCAAAATCA-TG-AAAAATAGAAAATGAGTCGTCTTGCAATG
195 AAATCACGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAAATAGAAAACGAGTCGTCTTGC-ATG
5869530 AAACTTCACGTGAAG-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
259 AAACTTCACGTGAAGAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
5869594 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
324 ATGCAAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
5869659 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCACCCGCTCATTTCGTCGGTTGGCTTAGGC
388 CGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCG--ACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
5869724 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCAGGGTT-ACGATAGCAGGATCGGCAGC
450 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGAGGATAGCAGGATCGGCAGC
** * * ** * * *
5869787 A-GCAGAGGG-GAACT--AGCCGATCCCCGGCTTGGCATCCCGCCCCTCCAGCTGGCTGAGCGCC
515 ACGCAGAGGGAG-ACTCGAATCGATCCCTGGCTTCGCATCCCGCCCCTCTGGCCGGCTGAGTGCT
*
5869848 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
579 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGT
** *
5869913 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GGCAGCACATGCTGGGCTCGTGCATG
643 TCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTT-TCGGCAGCACATGCTGGGCTCGGGCATG
* *
5869977 TGCTGGTGC--CATTTTTCTTCACCGGGGCACCATCGTCGGAGCTTCACCGGAGAACCTGACCGG
706 TACTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* * * ** * *
5870040 CAGTTGGGGTTCCAGCGATCGGGGGGCCGGGGGGCTGTGTGCGCACATGATGTTGATGGGTGCTG
771 CAGTTGGGGGTCCAACGATCGAGGGGCCGCAGGGC-GTGTGCGCACATGATATCGATGGGTGCTG
* *
5870105 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACACCCCCTT
835 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTAACACCCCCTT
* *
5870166 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACAC
1 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
5870231 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCC
66 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
5870295 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGTAAAAAAATTTTA
131 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-G--AAAAAATTTTA
* * * * *
5870360 AAAAATCCCAAACAG-ACAAAAGTTTCAAAAATCAGCTGAAAAAATACGAAAACGAATCATCTTG
193 AAAAATCACGAACCGCA-AAAAGTTTCAAAAATCAG-TGAAAAAATA-GAAAACGAGTCGTCTTG
* *
5870424 C-TGAAACTTCACCGTGAACGAGCTTAAGAGACCATTGAATGAATTT-CAAGCCATTAAAAATGG
255 CATGAAACTTCA-CGTGAA-GAGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGG
* * * * *
5870487 CAATTAGGCATGCATATATGTTAAGATGTGCCTTAAACCACCTACCACCTTATCGATCCACGGCT
317 C-ATT-GGCATGCAAAAATATGAAGATGTGCC-TAAACCACCTACCACCCTATCGATCCACGGCT
* * *
5870552 TGCCGCTTCCCGTCTCTCTGGCCGACGTAGTGCACCGCCCGTCCGACCAGCATCGTTTCAT-GGT
379 TG-CGCATCCCGTCTCTCTGGCCGACGTAGTGC-CCGCCCG-CCGACCCGC-TCGTTTCGTCGGT
* * * *
5870616 TGGCTTAGGCATACGGAGTTCATTCCCATATCTAAAAGATCAGACCAGATGAGGGTTGTGGAATA
440 TGGCTTAGGCATACGGAGTTCATTCCCA-GTCT--AAGATCGGACCAGACGAGGGTTGAGG-ATA
* * *
5870681 GCAGGATCGGCAACACGCAGAGGAGAGACTCGAATCGATCCTTGGCTTACCGAATCCCGCCCCCT
501 GCAGGATCGGCAGCACGCAGAGG-GAGACTCGAATCGATCCCTGGCTT--CGCATCCCG-CCCCT
* * *
5870746 CTGGCCGGCTGATGTAGCTTCGCACGCTCCTTTCGTGGACTTGACTTAGGCATATGGAGTTCATT
562 CTGGCCGGCTGA-GT-GC-TCGCACGCTCATTTCGTGG-GTTGACTTAGGCATACGGAGTTCA-T
* *
5870811 TCACAGTGCTAAGCGTGACGGAAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTTACG
622 TC-CAGT-CTAAGCAT-ACGG-AGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTT-CG
** * *
5870876 GCAGCACATGCTATGCCCGGGCATGTACTGGTGCTGCATTTTTCTTCACCGTGGCACCATCGTCG
681 GCAGCACATGCTGGGCTCGGGCATGTACTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCG
* * * *
5870941 GAGCATCATCGGAGAACTTGACTGGTGGCA-TTGGGGGTCCAATGATCGAGGGGCCGACAGGG-G
746 GAGCATCACCGGAGAACCTGAC---CGGCAGTTGGGGGTCCAACGATCGAGGGGCCG-CAGGGCG
5871004 TGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATA
807 TGTGCGCACATGATAT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATA
* * *
5871069 AAACCTCGAGAAGTCACACCCCCTT
871 AAACCTCAAGAACTAACACCCCCTT
5871094 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACAC
1 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
5871158 TTTTTTCAAAT-GTCACAAAATCTCGAACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCC
66 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
5871222 AACAAAAATACAAGGATCACGTCTACCAAG--TGGGGCCAAAACTCCTTCCG-AAAAATTCTAAA
131 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* ** * * *
5871284 AAATCATGAACCGCAAAAAGTTTTGAAAAT-TGTGAAAATAGAGAAAACGAGTCGTCTTGCCATG
195 AAATCACGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAAATAGAAAACGAGTCGTCTTG-CATG
5871348 AAACTTCACGTGAA-AGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
259 AAACTTCACGTGAAGAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
5871412 ACGTAGAAATATGAAGATGTCCCTATACCAACCTACTACCCTATCGATCCACGGCTTGCGCATCC
324 ATGCAAAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
5871477 CGTCTCTCTGGCCGATATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTTGTCGATTGGCTTCGG
388 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGA----CCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
5871542 CATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCATGATCGATA
449 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGAGGATAGCAGGATCGGCA
* * * *
5871605 GCACGCAGAGGGGGACCCG-ATCGATCCCTGGCTTGTGCATCCCGTCCCTCTGGCCGGCTGAGTG
513 GCACGCAGAGGGAGACTCGAATCGATCCCTGGCTT-CGCATCCCGCCCCTCTGGCCGGCTGAGTG
* *
5871669 CTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGA
577 CTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGA
* * *
5871734 GTTCATTCCCAGTCTAAG-T----TGGACCGAGGGTTGCGGTAGCACATGCTGGGATCGGGCATG
641 GTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATG
* * *
5871794 TACTGGTG-TCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGAAGAACCTGTCCG
706 TACTGGTGCT-GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
5871858 G
770 G
5871859 TAGTGTCATA
Statistics
Matches: 1474, Mismatches: 149, Indels: 139
0.84 0.08 0.08
Matches are distributed among these distances:
889 6 0.00
890 18 0.01
891 142 0.10
892 6 0.00
893 77 0.05
894 14 0.01
895 39 0.03
897 12 0.01
898 13 0.01
899 24 0.02
900 51 0.03
901 7 0.00
902 95 0.06
903 48 0.03
904 31 0.02
905 27 0.02
906 10 0.01
907 3 0.00
908 33 0.02
909 14 0.01
910 18 0.01
911 7 0.00
912 32 0.02
913 16 0.01
914 24 0.02
915 49 0.03
916 56 0.04
917 33 0.02
918 51 0.03
919 45 0.03
920 21 0.01
921 18 0.01
922 38 0.03
923 36 0.02
924 30 0.02
925 1 0.00
926 107 0.07
927 48 0.03
928 167 0.11
929 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (895 bp):
AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCACGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAAATAGAAAACGAGTCGTCTTGCATGAA
ACTTCACGTGAAGAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAAAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCGACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGAGGATAGCAGGATCGGCAGCACGCAG
AGGGAGACTCGAATCGATCCCTGGCTTCGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGACTGGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCT
GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCAGTTGGGGG
TCCAACGATCGAGGGGCCGCAGGGCGTGTGCGCACATGATATCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTAACACCCCCTT
Found at i:5871729 original size:26 final size:26
Alignment explanation
Indices: 5871699--5871751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5871689 GTTGACTTAG
*
5871699 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5871725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5871751 G
1 G
5871752 TTGGACCGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5872452 original size:58 final size:57
Alignment explanation
Indices: 5872337--5872630 Score: 401
Period size: 58 Copynumber: 5.0 Consensus size: 57
5872327 TCTTGTGTAG
*
5872337 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTGGAAATTTATTTTTAA
5872396 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTGGAAATTTATTTTTAA
* * **
5872454 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
*** *
5872514 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAATTTATTTTTAA
5872571 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTCTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT-TGGAAA-TTT-ATTTTTA
5872631 TTTAAAGAAA
Statistics
Matches: 209, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
56 1 0.00
57 37 0.18
58 75 0.36
59 48 0.23
60 41 0.20
61 7 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:5872554 original size:117 final size:117
Alignment explanation
Indices: 5872339--5872627 Score: 413
Period size: 117 Copynumber: 2.5 Consensus size: 117
5872329 TTGTGTAGGG
* **
5872339 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
** *
5872403 TGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAAGA
65 TGATACTTTCAACTTTTCCCAAAAAATACCTTTTTGAAAATTTATTTTTAAGA
*
5872456 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
* *
5872521 TGATACTTTCAACTTTTCCTC-AAAAA-CCCTTTTTGAAAATTTATTTTTAAGG
65 TGATACTTTCAACTTTTCC-CAAAAAATACCTTTTTGAAAATTTATTTTTAAGA
* *
5872573 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTCTGGAAATTTTGATTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTT-TTGAAAATTTGATTT
5872628 TTATTTAAAG
Statistics
Matches: 156, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
116 3 0.02
117 102 0.65
118 50 0.32
119 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATT
GATACTTTCAACTTTTCCCAAAAAATACCTTTTTGAAAATTTATTTTTAAGA
Found at i:5872657 original size:14 final size:14
Alignment explanation
Indices: 5872638--5872691 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
5872628 TTATTTAAAG
5872638 AAAATAGAATAATA
1 AAAATAGAATAATA
*
5872652 AAAATAGAAAAATA
1 AAAATAGAATAATA
* *
5872666 AAAAAAGTAA-AACA
1 AAAATAG-AATAATA
*
5872680 AAAATAAAATAA
1 AAAATAGAATAA
5872692 ATTAAGATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
13 2 0.06
14 29 0.88
15 2 0.06
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (14 bp):
AAAATAGAATAATA
Found at i:5872734 original size:4 final size:4
Alignment explanation
Indices: 5872727--5872771 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
5872717 AACCTAATCT
* *
5872727 AATA AATA AATA AATA AATA AACA AATA AATGAA AATA AAAA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT--A AATA AATA AAT
5872772 TTCAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
4 31 0.89
6 4 0.11
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:5873141 original size:20 final size:20
Alignment explanation
Indices: 5873116--5873164 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
5873106 GGTTGAAGAT
* *
5873116 TCACCGGATTCTGGGTTTTG
1 TCACCGGAATCTAGGTTTTG
*
5873136 TCACCGGAATCTAGGTTTTT
1 TCACCGGAATCTAGGTTTTG
5873156 TCACCGGAA
1 TCACCGGAA
5873165 GTTCACCGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.35
Consensus pattern (20 bp):
TCACCGGAATCTAGGTTTTG
Found at i:5873171 original size:11 final size:11
Alignment explanation
Indices: 5873155--5873187 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5873145 TCTAGGTTTT
5873155 TTCACCGGAAG
1 TTCACCGGAAG
*
5873166 TTCACCGAAAG
1 TTCACCGGAAG
5873177 TTCACCGGAAG
1 TTCACCGGAAG
5873188 GTCATCTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.18
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:5873758 original size:25 final size:24
Alignment explanation
Indices: 5873730--5873777 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
5873720 TAACAGATAA
* *
5873730 TACAATAAGATAAATCAAAAAATAT
1 TACAAGAAAATAAAT-AAAAAATAT
*
5873755 TACAAGAAAATTAATAAAAAATA
1 TACAAGAAAATAAATAAAAAATA
5873778 ATAATAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.23
Consensus pattern (24 bp):
TACAAGAAAATAAATAAAAAATAT
Found at i:5873841 original size:17 final size:17
Alignment explanation
Indices: 5873781--5873845 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
5873771 AAAAATAATA
5873781 ATAATA-ATAAATAAATT
1 ATAATATATAAATAAA-T
5873798 ATAATATAT-AATAAAT
1 ATAATATATAAATAAAT
5873814 ATAGAACTATATAAATAAA-
1 AT--AA-TATATAAATAAAT
*
5873833 AT-ACATATAAATA
1 ATAATATATAAATA
5873846 TTAACAGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
15 9 0.21
16 4 0.10
17 12 0.29
18 4 0.10
19 7 0.17
20 6 0.14
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAATATATAAATAAAT
Found at i:5873910 original size:27 final size:27
Alignment explanation
Indices: 5873857--5873918 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
5873847 TAACAGAAAA
*
5873857 AAAATAAATAAATAAGTAAAAATATACAT
1 AAAAT-AAT-AATAAATAAAAATATACAT
*
5873886 ATAATAATAATAAATAATAAA-ATACAT
1 AAAATAATAATAAATAA-AAATATACAT
5873913 AAAATA
1 AAAATA
5873919 CAAAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 19 0.66
28 6 0.21
29 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAATAATAATAAATAAAAATATACAT
Found at i:5874137 original size:22 final size:19
Alignment explanation
Indices: 5874111--5874171 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 19
5874101 CAACTCAACA
5874111 TTGTCATTTTTTATTTTTTTT
1 TTGTC-TTTTTT-TTTTTTTT
5874132 TGTGTCTTTTTTTTTTGTTTT
1 T-TGTCTTTTTTTTTT-TTTT
5874153 TTGT-TTTTTTGTTTTTTTT
1 TTGTCTTTTTT-TTTTTTTT
5874172 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 10 0.27
20 11 0.30
21 12 0.32
22 4 0.11
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.84
Consensus pattern (19 bp):
TTGTCTTTTTTTTTTTTTT
Found at i:5874144 original size:15 final size:14
Alignment explanation
Indices: 5874124--5874171 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
5874114 TCATTTTTTA
5874124 TTTTTTTTTGTGTCT
1 TTTTTTTTTGTGT-T
5874139 TTTTTTTTTGT-TT
1 TTTTTTTTTGTGTT
5874152 TTTGTTTTTT-TGTT
1 TTT-TTTTTTGTGTT
5874166 TTTTTT
1 TTTTTT
5874172 ACCAAAGCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.26
14 12 0.39
15 11 0.35
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTGTGTT
Found at i:5874159 original size:13 final size:12
Alignment explanation
Indices: 5874117--5874171 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
5874107 AACATTGTCA
*
5874117 TTTTTTATTTTT
1 TTTTTTGTTTTT
*
5874129 TTTTGTGTCTTTT
1 TTTTTTGT-TTTT
5874142 TTTTTTGTTTTT
1 TTTTTTGTTTTT
*
5874154 TGTTTTT-TTGTT
1 T-TTTTTGTTTTT
5874166 TTTTTT
1 TTTTTT
5874172 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 5 0.14
12 16 0.43
13 16 0.43
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.87
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:5874271 original size:41 final size:41
Alignment explanation
Indices: 5874178--5874516 Score: 502
Period size: 41 Copynumber: 8.1 Consensus size: 41
5874168 TTTTACCAAA
* * *
5874178 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-TGAAA-ATAAATT
*
5874221 GCTCCTCTAAATAGAGGCACCACGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATT
5874262 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAATAAATT
* *
5874303 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGA-CTTTTGAAAATAAATT
5874345 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAATAAATT
* *
5874386 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTT-GAAAATAAATT
* *
5874428 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATT
*
5874469 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTT-GAAAATAAATT
5874511 GCTCCT
1 GCTCCT
5874517 TGACAATCAT
Statistics
Matches: 271, Mismatches: 18, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
40 7 0.03
41 140 0.52
42 94 0.35
43 30 0.11
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATT
Found at i:5874370 original size:83 final size:83
Alignment explanation
Indices: 5874178--5874516 Score: 563
Period size: 83 Copynumber: 4.1 Consensus size: 83
5874168 TTTTACCAAA
* * *
5874178 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAATAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
* *
5874243 CGA-CTTTTGAAAATAAATT
64 CGACCTTTGGAAAGTAAATT
5874262 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
5874327 ACCTTTGGAAAGTAAATT
66 ACCTTTGGAAAGTAAATT
*
5874345 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
5874410 ACTTTTGGAAAGTAAATT
66 ACCTTTGGAAAGTAAATT
* *
5874428 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
5874493 ACTTTTGGAAAGTAAATT
66 ACCTTTGGAAAGTAAATT
5874511 GCTCCT
1 GCTCCT
5874517 TGACAATCAT
Statistics
Matches: 244, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
82 31 0.13
83 184 0.75
84 29 0.12
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACCTTTGGAAAGTAAATT
Found at i:5874399 original size:124 final size:124
Alignment explanation
Indices: 5874178--5874516 Score: 538
Period size: 124 Copynumber: 2.7 Consensus size: 124
5874168 TTTTACCAAA
* * *
5874178 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAATAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
5874243 CGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
64 CGACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATT
*
5874303 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGA-CTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
* * *
5874368 GAC-TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATT
65 GACTTTTG-AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATT
*
5874428 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
5874493 ACTTTTGGAAAGTAAATTGCTCCT
66 ACTTTT-GAAAATAAATTGCTCCT
5874517 TGACAATCAT
Statistics
Matches: 199, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
123 4 0.02
124 107 0.54
125 82 0.41
126 6 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATT
Found at i:5875791 original size:17 final size:17
Alignment explanation
Indices: 5875766--5875808 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
5875756 AATCTCTTTT
*
5875766 TTTCATTTTCTCATTTC
1 TTTCTTTTTCTCATTTC
**
5875783 TTTCTTTTTCTTTTTTC
1 TTTCTTTTTCTCATTTC
5875800 TTTCTTTTT
1 TTTCTTTTT
5875809 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCTTTTTCTCATTTC
Found at i:5875797 original size:7 final size:7
Alignment explanation
Indices: 5875763--5875850 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 7
5875753 TTGAATCTCT
5875763 TTTTTTC
1 TTTTTTC
*
5875770 ATTTTCTC
1 -TTTTTTC
5875778 ATTTCTTTC
1 -TTT-TTTC
5875787 -TTTTTC
1 TTTTTTC
5875793 TTTTTTC
1 TTTTTTC
5875800 TTTCTTT-
1 TTT-TTTC
5875807 TTTTTTC
1 TTTTTTC
5875814 TTTTTT-
1 TTTTTTC
* **
5875820 TCATCATC
1 T-TTTTTC
5875828 TTTTTTC
1 TTTTTTC
5875835 TCTTTTCTC
1 T-TTTT-TC
5875844 TTTTTTC
1 TTTTTTC
5875851 ATCCATTGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
6 8 0.12
7 28 0.44
8 22 0.34
9 6 0.09
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTTC
Found at i:5875819 original size:10 final size:10
Alignment explanation
Indices: 5875779--5875820 Score: 66
Period size: 10 Copynumber: 4.1 Consensus size: 10
5875769 CATTTTCTCA
*
5875779 TTTCTTTCTT
1 TTTCTTTTTT
5875789 TTTCTTTTTT
1 TTTCTTTTTT
5875799 CTTTCTTTTTT
1 -TTTCTTTTTT
5875810 TTTCTTTTTT
1 TTTCTTTTTT
5875820 T
1 T
5875821 CATCATCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 20 0.67
11 10 0.33
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:5875820 original size:11 final size:11
Alignment explanation
Indices: 5875787--5875820 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
5875777 CATTTCTTTC
5875787 TTTTTCTTTTT
1 TTTTTCTTTTT
*
5875798 TCTTTC-TTTT
1 TTTTTCTTTTT
5875808 TTTTTCTTTTT
1 TTTTTCTTTTT
5875819 TT
1 TT
5875821 CATCATCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:5875839 original size:44 final size:44
Alignment explanation
Indices: 5875762--5875846 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
5875752 TTTGAATCTC
* * *
5875762 TTTTTTTCATTTTCTCATTTCTTTCTTTTTCTTTTTTCTTTCTT
1 TTTTTTTCATTTTCTCATATCTTTCTTTCTCTTTTCTCTTTCTT
* *
5875806 TTTTTTTCTTTTTTTCATCATCTTT-TTTCTCTTTTCTCTTT
1 TTTTTTTCATTTTCTCAT-ATCTTTCTTTCTCTTTTCTCTTT
5875847 TTTCATCCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (44 bp):
TTTTTTTCATTTTCTCATATCTTTCTTTCTCTTTTCTCTTTCTT
Found at i:5879797 original size:59 final size:59
Alignment explanation
Indices: 5879702--5879996 Score: 425
Period size: 58 Copynumber: 5.0 Consensus size: 59
5879692 TCTTGTGTAG
* *
5879702 GGAAAATTGATACTTTCAACTTTTCCCCAAATATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
5879761 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
* **
5879819 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTGAAAATTT-ATTTTTAA
* ***
5879879 GGAAAATTGATACTTTCAACTTTTCCTTAAAAA-CCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
5879937 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT-GAAAATTT-ATTTTTA
5879997 TTTAAAGAAA
Statistics
Matches: 209, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
57 2 0.01
58 91 0.44
59 65 0.31
60 42 0.20
61 9 0.04
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:5879920 original size:118 final size:117
Alignment explanation
Indices: 5879702--5879993 Score: 442
Period size: 118 Copynumber: 2.5 Consensus size: 117
5879692 TCTTGTGTAG
* **
5879702 GGAAAATTGATACTTTCAACTTTTCCCCAAATATATTTTTTTTGAAAATTT-ATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
* * *
5879766 ATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
*
5879819 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
** *
5879884 ATTGATACTTTCAACTTTTCCTTAAAAACCCTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
*
5879937 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
5879994 TTATTTAAAG
Statistics
Matches: 160, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
116 2 0.01
117 47 0.29
118 99 0.62
119 12 0.08
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAA
TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
Found at i:5880023 original size:14 final size:14
Alignment explanation
Indices: 5880004--5880056 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
5879994 TTATTTAAAG
*
5880004 AAAATAGAATAATA
1 AAAATAGAAAAATA
5880018 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
5880032 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
5880047 AAAATA-AAAA
1 AAAATAGAAAA
5880057 TGAAATTACG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.09
14 18 0.56
15 11 0.34
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5881056 original size:4 final size:4
Alignment explanation
Indices: 5881045--5881188 Score: 58
Period size: 4 Copynumber: 36.8 Consensus size: 4
5881035 ACAAGAAAAA
*
5881045 AAAT -AAT AAAT -AAT -AAT -AAT AAAT AAAT -TAT AATAT ATAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT AAAT
* * * * * *
5881090 ATAG AACT ATAT AAAT AAAAT ACATAT AAAT -ATT AACAG AAA- AAAT
1 AAAT AAAT AAAT AAAT -AAAT A-A-AT AAAT AAAT AA-AT AAAT AAAT
* *
5881136 AAAT AAAT AAAT AAAT AAGT AAA- AATAT ACAT ATAAT -AAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT AAAT AAAT AAAT
5881183 -AAT AAA
1 AAAT AAA
5881189 CTACATAAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 32
0.69 0.11 0.21
Matches are distributed among these distances:
3 30 0.28
4 56 0.52
5 17 0.16
6 4 0.04
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:5881124 original size:89 final size:93
Alignment explanation
Indices: 5881028--5881197 Score: 223
Period size: 93 Copynumber: 1.9 Consensus size: 93
5881018 TAAATCAAAA
5881028 AAATATT-ACA-AGAAAAA-AAAT-AATAAAT-AATAA-TAATAAATA-A-ATTATAATATATAA
1 AAATATTAACAGA-AAAAATAAATAAATAAATAAATAAGTAA-AAATATACA-TATAATA-ATAA
*
5881085 TAAAT-ATAGAACTATATAAATAAAATACATAT
62 TAAATAATA-AACTACATAAATAAAATACATAT
5881117 AAATATTAACAGAAAAAATAAATAAATAAATAAATAAGTAAAAATATACATATAATAATAATAAA
1 AAATATTAACAGAAAAAATAAATAAATAAATAAATAAGTAAAAATATACATATAATAATAATAAA
5881182 TAATAAACTACATAAA
66 TAATAAACTACATAAA
5881198 ATACAAAAGA
Statistics
Matches: 71, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
89 7 0.10
90 8 0.11
91 5 0.07
92 7 0.10
93 29 0.41
94 14 0.20
95 1 0.01
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.27
Consensus pattern (93 bp):
AAATATTAACAGAAAAAATAAATAAATAAATAAATAAGTAAAAATATACATATAATAATAATAAA
TAATAAACTACATAAATAAAATACATAT
Found at i:5882033 original size:20 final size:20
Alignment explanation
Indices: 5882004--5882043 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
5881994 GCGCATCCTA
5882004 CCCCTCTGGCCGGCTGAGCG
1 CCCCTCTGGCCGGCTGAGCG
* *
5882024 CCCCTTTGGCTGGCTGAGCG
1 CCCCTCTGGCCGGCTGAGCG
5882044 ACCGCACGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.40, G:0.35, T:0.20
Consensus pattern (20 bp):
CCCCTCTGGCCGGCTGAGCG
Found at i:5882104 original size:26 final size:26
Alignment explanation
Indices: 5882074--5882126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5882064 GTTGACTTAG
*
5882074 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5882100 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5882126 G
1 G
5882127 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5882198 original size:26 final size:26
Alignment explanation
Indices: 5882168--5882222 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
5882158 AGCTGGGCTC
*
5882168 GGGCATGTGCTGGTGCACCATCGTCG
1 GGGCATGTGCTGGTGCACCATCGCCG
5882194 GGGCATGTGCTGGTGCACCATCGCCG
1 GGGCATGTGCTGGTGCACCATCGCCG
5882220 GGG
1 GGG
5882223 TAGAGCTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.11, C:0.27, G:0.42, T:0.20
Consensus pattern (26 bp):
GGGCATGTGCTGGTGCACCATCGCCG
Found at i:5885713 original size:26 final size:26
Alignment explanation
Indices: 5885684--5885736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5885674 GTTGACTTAG
*
5885684 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
5885710 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
5885736 G
1 G
5885737 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:5887269 original size:8 final size:8
Alignment explanation
Indices: 5887256--5887281 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
5887246 GCGTAGTGCC
5887256 CGCCCGCT
1 CGCCCGCT
5887264 CGCCCGCT
1 CGCCCGCT
5887272 CGCCCGCT
1 CGCCCGCT
5887280 CG
1 CG
5887282 TTTCGTCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.62, G:0.27, T:0.12
Consensus pattern (8 bp):
CGCCCGCT
Found at i:5887495 original size:26 final size:26
Alignment explanation
Indices: 5887459--5887511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5887449 GCTGACTTAG
5887459 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
* *
5887485 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
5887511 G
1 G
5887512 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:5888395 original size:26 final size:26
Alignment explanation
Indices: 5888359--5888411 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5888349 GCTGACTTAG
5888359 GCATACGGAGTTCATTCGC-AGTCTAA
1 GCATACGGAGTTCATTC-CTAGTCTAA
5888385 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5888411 G
1 G
5888412 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5888498 original size:900 final size:899
Alignment explanation
Indices: 5886578--5890849 Score: 5519
Period size: 900 Copynumber: 4.8 Consensus size: 899
5886568 GTTGACTTAG
* * * *
5886578 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGTTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
5886643 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCAACGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAGA
* * * *
5886708 ACCTGACCGGCAGCATTGTGGTTCTGACGGTCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5886772 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5886837 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTATGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5886902 GGTGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
* * *
5886967 TGCGTGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
390 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * ** * *
5887032 AGTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAAGGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
5887097 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5887162 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTACG
584 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5887227 AATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGCCCGCTCGTTTCGTCAGT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CG--C-C-CGCCCACTCGTTTCGTCAGT
* * * *
5887292 TGGCTTAGCCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCAGCAGTAG
706 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAG
* *
5887357 GAT-CGGTAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
771 GATCCGATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-
* * **
5887421 G-CTGAACGCCCGTACGCTCGTTTCGTGGGCTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAA
835 GACTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5887485 GCATACAGAGTTCATTCCCTGTCTAAGATCGGACC-GAACCAAGGGTTACGGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
5887549 GCTCTGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAG
* **
5887614 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGAGGCCGGGGTGGGTGTGCGCACAAAATG
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGG-GGCCGGGG-GGGTGTGCGCACATGATG
* *
5887679 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5887744 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5887809 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACGCTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * * *
5887874 TATGCATGCCAAAAAAATACGAGGATCACATCTACCAATTTTAGGGCCAAAACTCCTTCCAAAAA
388 TATGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
5887939 AAATTTAAAAAATCCCTAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5888004 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * * *
5888069 ATTGGCATGCATAAGTATGAAGATGTGCCTGAACCAACCTACCACCCTATCGATCAATGGCTTGC
583 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** ** * * * *
5888134 GCATATCGTCTCTCTGGTAGGCGTAGAGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTA
* * * *
5888199 GGCATACGGCGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGTAGGATCCG-
713 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCCGA
* * * * * *
5888263 CAGCACACAGAGGGGGACCTGACCTATCCCCGGCTTGCGCATCCCGGCCCTCTGGTCGGCTGAGC
778 TAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
5888328 GCCCGCACGCTCGTTTTGTGGGCTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5888385 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
5888450 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCA---TC---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAGA
* * * * * * **
5888504 ACCTGACCGGCAGTATTGGGGTTCCGGTGATTGGGGGGTCGGGGTGGGTGTGCGCACAAAATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG
* *
5888569 GGATGGGTGCTGGTACTTGGCCCATATATTGGCCCATATATTGGCCCCCTATCCCTCATCAAACT
195 CGATGGGTGCTGGTACTTGGCCC------T------TATATTGGCCCCCTATCCCTCATCAAACC
*
5888634 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
248 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
5888699 AGTGTCTGAATTGGGAACAGTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGC
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* * **
5888764 T-AATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGCAGCCAAAAC
378 TGAA-TTTTTTTATGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
5888828 TCCTTCCAAAAAAATTTTAAAAAATCCCGAA-C-TACAGAAAGTTTTGAAAATCGTGAAAAATAG
441 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA-A-AAAGTTTTAAAAATCGTGAAAAATAG
* * *
5888891 AAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAA
504 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
5888956 TCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
569 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* ** *
5889021 CATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAGTGCCCGCCCGCCTGCCCACTCGTTT
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTT
* * * * * * *
5889085 CATCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCG
699 CGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCA
** * * *
5889150 GCAGTAGGA-CCGATAGCATGCAGAAGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCT
764 GCAGTAGGATCCGATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
5889214 CTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
829 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCA
5889279 GTCTAA
894 GTCTAA
* * * * * *
5889285 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** *
5889350 CTCGGGCATGTGCTGGTGATGCATTTTTCTTTGTC-AGGGCACCATCGTCAGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCAGAGCATCGCCGGAG
* * * * ** *
5889414 AACCTGATCGGCGGCATTGAGGTTTTAGAAATCGGGGGGGGCCGGGGGGGTGTGCGCACATGATA
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATC--GGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * * *
5889479 TGCGATGGGAGCTGGTACTTGGCCTTTATATTGGCCCCCCATCCCTCATCAAACCTCAAAAACTG
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5889544 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5889609 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
5889673 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
388 TATGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
5889738 AAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
5889803 TTGCCATGAAAGC-TCATGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAA-CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5889867 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCACTCTATCGATCAACAGCTT
581 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
5889932 GCACAACCCGTCTCTCTGGTCGCACGTAGTGCCCGCCCATCCGCCTGCCCACTCGTTTCGTCAGT
646 GCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCG--C--CCGCCCGCCCACTCGTTTCGTCAGT
* ** * * *
5889997 TGGCTTAGGCATACAGAGTTCATTCCCA-TGCTAAGATCGGACCAGATTGAGGGTTGCGGTAGCA
706 TGGCTTAGGCATACAGAGTTCATTCCCAGT-CTAAGATCGGACCGGACCGAGGGTTGCAGCAGTA
5890061 GGAT-CGATAGCACACAGA--GGG----G---GA--CCCGG--T-CG-AT-------C-C---CC
770 GGATCCGATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
5890099 GACT-TGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GACTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5890163 GCATACGGAGTTCGTTCCCAGTTTAAGATTGAACCGGACCGAGGGTTAAC-ACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGGCAGCACATGCTGG
* * * * * * **
5890227 GCTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCTTCGAGTCACCATCGCCGGAGCATTGCAAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAG
* * *
5890292 AACCTGACCGACGGCATTGGGGTTCTGACGATCGGCGGGCC-GGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5890356 TGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAG-ACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5890420 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5890485 GGGGACACCTTTTTCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
* **
5890550 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAA
390 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * *
5890614 ATTTTAGGAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
5890679 GCCTTGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5890744 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
5890809 CATCCCGTCTCTCT-GCAAAGCGTAGTGCCCGCCCACCCGCC
649 CATCCCGTCTCTCTGGC-CGGCGTAGTGCCCGCCCGCCCGCC
5890850 TGCTCGCTTT
Statistics
Matches: 2964, Mismatches: 345, Indels: 150
0.86 0.10 0.04
Matches are distributed among these distances:
869 7 0.00
871 1 0.00
873 12 0.00
874 268 0.09
875 180 0.06
876 7 0.00
878 185 0.06
879 8 0.00
882 1 0.00
883 1 0.00
888 51 0.02
889 38 0.01
890 2 0.00
891 1 0.00
892 2 0.00
894 7 0.00
896 2 0.00
897 2 0.00
899 303 0.10
900 848 0.29
901 251 0.08
902 1 0.00
903 6 0.00
904 3 0.00
905 94 0.03
906 8 0.00
907 140 0.05
908 253 0.09
909 206 0.07
911 28 0.01
912 37 0.01
913 11 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCCGATAG
CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5888602 original size:12 final size:12
Alignment explanation
Indices: 5888585--5888615 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
5888575 GTGCTGGTAC
5888585 TTGGCCCATATA
1 TTGGCCCATATA
5888597 TTGGCCCATATA
1 TTGGCCCATATA
5888609 TTGGCCC
1 TTGGCCC
5888616 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.32
Consensus pattern (12 bp):
TTGGCCCATATA
Found at i:5889295 original size:26 final size:26
Alignment explanation
Indices: 5889259--5889311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5889249 GTTGACTTAG
*
5889259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5889285 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5889311 G
1 G
5889312 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5890167 original size:26 final size:26
Alignment explanation
Indices: 5890137--5890189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5890127 GTTGACTTAG
5890137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5890163 GCATACGGAGTTCGTTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5890189 G
1 G
5890190 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5891249 original size:26 final size:26
Alignment explanation
Indices: 5891220--5891272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5891210 GTTGACTTAG
**
5891220 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5891246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5891272 G
1 G
5891273 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5892145 original size:26 final size:26
Alignment explanation
Indices: 5892115--5892167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5892105 GTTGACTTAG
5892115 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5892141 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5892167 G
1 G
5892168 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5892703 original size:571 final size:571
Alignment explanation
Indices: 5891614--5892712 Score: 1759
Period size: 571 Copynumber: 1.9 Consensus size: 571
5891604 TACACTTAAA
* * **
5891614 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTG
1 GTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
5891679 GCCAAAACTCCTTCCGAAAAAATATTAATAAATCTCGAACCATAAAAAGTTTCAAAAATCGTAAA
66 GCCAAAACTCCTTCCGAAAAAATATTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATAAA
5891744 AAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
5891809 TTACAAGCCATAAAAATGGCATTGGCATGCCGAAATATGAAGATGTCCCTAAACCAACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCAACCAACCAC
*
5891874 CCTATCGATCCATGGCCTGCGCATCCCGTCTCTCTAGCCGAAATAGTGCCCGCCCGCCCACTTGT
261 CCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGAAATAGTGCCCGCCCGCCCACTTGT
*
5891939 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTG
326 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTG
* * * * * * *
5892004 CAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCTGTCGATCCTCGGCTTGCGCATCCCGCCCC
391 CAGCAGCAAGATCGGCAGCACGCAGAAGGGGACCCTGCCGATCCCCGGCTCGCACATCCCACCCC
*
5892069 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
456 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
5892134 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
521 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
*
5892185 GTTTTTGGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** *
5892250 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATATTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATAAA
* *
5892315 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
5892380 TTACAAGCCATAAAAATGGCATTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCAC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCAACCAACCAC
* * * ** *
5892445 CCTGTCGATCCACGGCTTGCGTATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCTTGT
261 CCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGAAATAGTGCCCGCCCGCCCACTTGT
* * *
5892510 TTCGTCGGTTGGCTTAGGCATACGGATTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTG
326 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTG
** * * * *
5892575 TGGTAGTAGGATCGGCAGCACGCAGAAGGGGACTC-GACCGATCCCCGGCTCGCACATCCCACCC
391 CAGCAGCAAGATCGGCAGCACGCAGAAGGGGACCCTG-CCGATCCCCGGCTCGCACATCCCACCC
* *
5892639 CTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
455 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
5892704 CAGTCTAAG
520 CAGTCTAAG
5892713 ATCAGATCGG
Statistics
Matches: 480, Mismatches: 47, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
570 1 0.00
571 479 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (571 bp):
GTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATATTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATAAA
AAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCAACCAACCAC
CCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGAAATAGTGCCCGCCCGCCCACTTGT
TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTG
CAGCAGCAAGATCGGCAGCACGCAGAAGGGGACCCTGCCGATCCCCGGCTCGCACATCCCACCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
Found at i:5894281 original size:26 final size:26
Alignment explanation
Indices: 5894252--5894304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5894242 GTTGACTTAG
*
5894252 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5894278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5894304 G
1 G
5894305 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5896060 original size:26 final size:26
Alignment explanation
Indices: 5896024--5896076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5896014 GTTGACATAG
5896024 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
5896050 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5896076 G
1 G
5896077 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5898690 original size:26 final size:26
Alignment explanation
Indices: 5898660--5898712 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5898650 GTTGGCTTAG
*
5898660 GCATACGG-AGTTCATTCCCAGTTTAA
1 GCATA-GGAAGTTCATTCCCAGTCTAA
5898686 GCATAGGAAGTTCATTCCCAGTCTAA
1 GCATAGGAAGTTCATTCCCAGTCTAA
5898712 G
1 G
5898713 ATCATACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAGGAAGTTCATTCCCAGTCTAA
Found at i:5899600 original size:26 final size:26
Alignment explanation
Indices: 5899564--5899614 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5899554 TTGACTTAGG
5899564 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCTAGTCTAAC
*
5899590 CATACGGAGTTCATTCCTTGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
5899615 GATCGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAC
Found at i:5901125 original size:882 final size:885
Alignment explanation
Indices: 5893497--5906566 Score: 15850
Period size: 898 Copynumber: 14.7 Consensus size: 885
5893487 TTTTTTTTGC
* * * * * * * *
5893497 CGGGACACCAT-CGTCGGAGAACCTGACCGACGACATTAGGGTTCCGGCGATCGGGGGGGCCAGG
1 CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
5893561 GTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCT
66 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5893625 CATCAAACCTTGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
131 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
5893690 AGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
196 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
5893755 GTTTTTAGCTAAATGTTTTTGTGTATGCCAACAAAACTACAAGGATCACGTCTTCCAAGTTTGGG
261 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5893820 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAACCCCGAACCGCATAAAGTTTCAAAAATCATGAA
326 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
5893885 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAAT
391 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
5893950 TTATAAGCCATCAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACTAC
456 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
5894015 CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGGCGGCGT-GAT----GCCCGCCCGTTCT
521 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCGCCCGCTCG
* **
5894075 TTTCGTCGATCAGCTTAGGCATAC-GATGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
585 TTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGT
* * * ** * * *
5894139 TGTC-ACAGCAAGATTGGCAGCAC-GTGAAGGGGGACCCGACCGA-CCCTCAGCTTGCGCATCCC
648 TG-CGATAGCAGGATCGGCAGCACACAG-AGGGGGACCCGATCGATCCC-CGGCTTGAGCATCCC
* * * * * *
5894201 GCCCCTCTGGCCGACTGAGCCCCCGTACGCTCGTTTTGTGAGTTGACTTAGGCATACGAAGTTCA
710 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
5894266 TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCA
775 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCA
* * * **
5894331 GCACATGCTGGGCTCGAGCATGTGTTGGTGGCATATTTTTCTTCGT
840 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
5894377 CGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
1 CGGGGCACCAT-------GCAT---CGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
5894442 GGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGCC
56 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
5894507 CCCTATCCCTCATCAAACCTTGAAAAC-CAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
121 CCCTATCCCTCATCAAACCTCGAGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
5894571 TTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACCTTTTTCTAATGGTCTCAAAATCTT
185 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
5894636 GTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
250 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * **
5894701 CCAAGTTTGGGGCCAACACTCCTTCC-AAAAAATTTTTTAAAAATCTCGAACCATAAAAAGTTTC
315 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
5894765 GAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
379 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* ** * *
5894830 CATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCACAAATCTGAAGATGTGCCTAAA
444 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * * *
5894895 CGCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGA
509 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT------
* * * * *
5894960 CCGCCCGTCCGTCCGCCCGCTCATTTCGTCGGTTGGGTTGGGCATACGAAGTTCATTCCTAGGCT
568 --GCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCT
* * * *
5895025 AGGATCGGACAAGACCGAGGGTTGC-AGTAGCAGGATTGGCAGCACACAGAGGGGGACCCGGTCG
626 AAGATCGGACCAGACCGAGGGTTGCGA-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCG
* * *
5895089 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCGCGCTCGTTTCGTGGGTTG
690 ATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
5895154 ACTTAGGCATGCGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GAT----
755 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * *
5895194 -CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATATGCTGGTGCCGTATTTTTCTTCG
820 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
5895258 T
885 T
* * * *
5895259 CGGGGCACCAT-CACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGGCC--G
1 CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
5895321 GGGGTGTGCGAACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
66 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5895386 CATCAAACCTCAAGAACTCACACCTCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
131 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5895450 AGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTACGA
196 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
5895515 GTTTTTAGCTGAATTTTTTTTTGCATGCCTACAAAAATACAAGGATCACGTCCACCAAGTTTGGG
261 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5895580 GCCAAAACACC-TGCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
326 GCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
*
5895644 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAC
390 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
5895709 TTTACCAGCCATAACAATGGCATTGGCAGATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
455 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
5895774 CCCTATC-ACTCCACGACTTGTGCATCCCGTCTCTCTGTCCGGCGTAGTGTCCGCCCGCCCGCCC
520 CCCTATCGA-TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT------GCCCGCCC
* * *
5895838 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTTCCAGTCTAAGATCTGACCAGA
576 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCAGA
* ** * * *** * * * * *
5895903 CCGAGGGTTACGGCAGTAGGATCGACAGCATGTAGAGGGGGACTCGGTCGATCCTCGGCAT-ACA
640 CCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGA-G
* * * *
5895967 CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACATAGGCATACAG
704 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
5896032 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGACCAGACCGAGGGTT
769 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* ** * *
5896097 ACGGCAGCACATGCCAGGTTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCG-
834 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * ** *
5896148 CTAGGGCACCATCGTCGGAGCATCATCGGAGAACTTGACCGATGGCATTGGGGTTCCGGCGATCG
1 C-GGGGCACCA---T----G---CATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
*
5896213 GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGT
55 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
5896276 CCCCTATCCCTTATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTAAGATTTTACAGGT
120 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
** * *
5896341 TTGCTGCCAGTAGCCATTAAAGTGTCCAAAATAGGGACACTTATTTCAAATGGTCACAAAATCTT
185 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
5896406 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTA
250 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
5896471 CTAAGTTTTGGGCCAAAA---C-ACC----------T------T-----A----AAAAA---TC-
315 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
5896503 ---A---TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
380 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
5896562 ATTGTATGAGTTTACAAGCCATAAAAATGGCATTCGCTCATAGAAATATGAAGATGTGCCTAAAC
445 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* **
5896627 CCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCTATCTCTCTGGCCGGCGTAGTGCCCG-C
510 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
** * * *
5896691 CGATCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAA
575 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAG
* ** ** *
5896756 ATCGAGGGTTGC-AGTAGCAGGATCAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
639 ACCGAGGGTTGCGA-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGA
* * * * * * *
5896820 GTATCCCACCCCTCTGGCCGACTAAGTGCCCGCACGTTCGTTTCGTTGGTTGACTTAGGCATACG
703 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * ** *
5896885 AAGTTCATTCCCAGTCTAACCATACTGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGT
768 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
* * * * * * * *
5896950 TGTGGCGGTAGATGTTGGGCTCTGGCATGTGCTGGTGCCGGATTTTTGTTCGT
833 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * ** * *
5897003 TGGGGCACCAT-CGTCGAAGAAAATGACCGACGGCATTGGGGTT-CGAGCGGTCGGGGGGGCC-G
1 CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG
* *
5897065 AGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC
65 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
5897129 TCATCAAACCTCAAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
130 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5897194 TAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTC-AATGGTCACAACATCTTGTACACTTCG
195 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5897258 AGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
260 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
5897323 GGCCAAAACTCCTTCC-AAAAAAATTTAAAAAAACCTGAACCGCAAAAAGTTTCGAAAATCATGA
325 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
5897387 AAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAA
390 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
5897452 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
455 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** *
5897517 CCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGTCCG
520 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCG
* * * * * *
5897582 CTCGTTTCGTCAGTTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAG
581 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAG
** * * * * * *
5897647 GGTCACTG-CAGCAGGATCTGCAGCACACAGAGGTGTACCCGATCGATCCTCGGCTT-ACGCACC
645 GGTTGC-GATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGA-GCATC
* * *
5897710 CCGCCCCTTTGGCCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
708 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
5897775 CATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTCAGATCGGACCGGACCGAGGGTTGCGG
773 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
* *
5897840 CAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGT
838 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
5897888 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATC-G
1 CGGGGCACCA---T----GCATCGT---AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * * * *
5897952 GGGGGCCGAGGGTGCTGTGCGCATATGATGTGCGATGGGTGCT-GTACTTTGACCTTATATTGGC
56 GGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
5898016 CCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
120 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* ** * ** *
5898081 TTGCTGCTAGTAGCCATTAAAAAGTCTAAAATACGGACACTTATTTCAAATGGTCACAAAATCTT
185 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
5898146 GTACACTTTGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
250 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * **
5898211 CTATGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAATCCTGAACCGCAAAAAGTTTTG
315 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
5898275 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
380 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
5898340 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-AGAAATATGAAGATGTGCCTAAAC
445 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * *
5898404 CCACCTACCACCCTATCGATCCAAC-GCTTGTGCATCCCGTCTCTCTGGCCGGCGCAGTGCTCGC
510 CCACCTACCACCCTATCGATCC-ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
5898468 CCGCCTGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
574 CCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGG
* * ** **
5898533 ACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGC
634 ACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGC
* * *
5898598 TTGTGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGGTTGGCTTAGGC
699 TTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGC
* *
5898662 ATACGGAGTTCATTCCCAGTTTAAGCATA-GGAAGTTCATTCCCAGTCTAAGATC-ATACCAGAC
763 ATACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGA-ACCGGAC
** *
5898725 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTTGT
826 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
5898785 CGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGAT-TG
1 CGGGGCACCAT-------GCATCGT---AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
5898849 GGGGGCCAGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGC
56 GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
5898914 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGT
120 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
5898979 TTGCTACCAGTAGCCAGTAAAGTGTCT-AAAAGAGGGACACTTATTTCAAATGGTCATAAAATCT
185 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGGACACTTTTTTCAAATGGTCACAAAATCT
* *
5899043 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCT
249 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * * ** * *
5899108 ACTAAGTTTTGGGCCAAAACTCCGT-CAAAAAAATTTTAAAAAATCTGGAACCGTAAAAAGTTTT
314 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
5899172 GAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
379 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
5899237 CATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGGAGATGTGCCTAAA
444 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * * * *
5899302 CCCGCCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTTTCTCTGGCCGACATAGTGCCCGC
509 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G-
* * * *
5899367 CCGTCCGCCCGCCCGCTAGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTATAAGA
569 -C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
* * * * * * *
5899432 TCGGATCAGACCAAGGGTTACGATAGCAAGATTGGCAGCACACAGAGGGGGACCTGACCGATCCC
630 TCGGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCC
* * * *
5899497 CGACTTGCA-CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTTGTGCGTTGACTT
695 CGGCTTG-AGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * **
5899561 AGGCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTCATTCCTTGTCTAAGATCGAACCGG
759 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGG
* * * *
5899626 ACCGAGGCTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
824 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** *
5899688 CGAGGCGCCATCGTCGGA-GCATCACCGAAGAACCTGACCGGTGGTGTTGGGGTTCCG-CGATCA
1 CG-GG-G-CA-C--C--ATGCAT---CGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
5899751 GGGGGGCCGGGGGGGTGTGCTCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTTTATTGGC
55 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
5899816 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
120 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
5899881 TTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCAGAAAATATT
185 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
5899946 GTACACTTCGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAGGGATCGCATCTA
250 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * *
5900011 CAAAGTTTGGGGCTAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCA
315 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
5900076 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACC
380 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *** * *
5900141 ATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAAA
445 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * * *
5900206 CCACCTACCACCCTATCGATACACGCCTTGCGCATCCCGTCTCTATGACTGGCGTAGTGCCCGCC
510 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
5900271 CGCCCGCTCGCTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAG
575 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCAG
* * * ** * *
5900336 ACTGAGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGCAGACCCGGTCGATCCCCGACTTGAG
639 ACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGAG
* * * * * *
5900401 CATCGCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACAG
704 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
5900466 AGTTCATTACCAGTCTGAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAACGGGACCGCGGGTT
769 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
*
5900531 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGT
834 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
5900583 C-GGGCACCAT-CATCGTAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCGGG
1 CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
5900646 GGGGTGTGCACACAGGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
66 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5900711 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTACTGCCAGT
131 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5900776 AGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATAGTCACAAAATATTGTACACTTCGA
196 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
5900840 G-TTTTAGCTGAATTTTTTTTTGCACGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGG
261 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * *
5900904 GCCAAAAATCGTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAATGTTTAAAAAAACGTGAA
326 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * * **
5900969 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGCCCATTACATGAAT
391 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
**
5901034 TTACAAGCCATAAAAATGGCATTCGG-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
456 TTACAAGCCATAAAAATGGCATT-GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
5901098 CCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCTGCCCGCCCGCTTG
520 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * * *
5901163 TTCCGTCTGTTGCCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGGCTGAGGGTT
585 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * * * * * * *
5901228 ACGGTACCAGGATCGGTAGGACACAGAAGGGGACCCGGTTGATCCCCGACTTGAGCATCCCACCC
649 GCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCC
* * * *
5901293 CTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
714 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * * * * * *
5901358 CAGTCTGAGAAAACGGAGTTCATTCTCAATCTAAGATTGAATCGGACTGAGGGTTGTGGTAGCAC
779 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAC
* **
5901423 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAC
844 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** * *
5901465 CGGGGCACCAT-CACCGTACAACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGCGGCCGGA
1 CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
5901528 GGGGTGTGCGCATAGGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCT
66 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
5901593 CATCAAACCTTGAGAACTCACACCCCCTT--ACAGCAATTGAGATTTTACAGGTTTGCTACCAGT
131 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5901656 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
196 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * **
5901721 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTCTG
261 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * *
5901786 GCTGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAACGTTTCAAAAATCGTGAA
326 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
5901851 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
391 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
5901916 TTACAAGCCACAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACTAC
456 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
5901981 CCTATCGATCCACTGCTTGCGCATCCCGTCTCTCCGGCCAGCGTAGTGCCCGCCTGCCCGCCCGC
521 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG-
* * * ** * *
5902046 CTACTCGTTTCATCGGTTGGCTTAAGCATACAGAGTTCATTCCTAGTCTAAGATTAGACCAAACT
581 ---CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGACC
* * ** * * * *
5902111 GAGGGTTGC-AGCAGCAGGATTGATAGCACCCAGAGGGGGACCC-AGCCGATCCTCGGCTTGCGC
642 GAGGGTTGCGA-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGAGC
** * * *
5902174 AT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTATTTCATGGATTGACTTAGGCATACAGA
705 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *** * *
5902238 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTATACCAAGGATTG
770 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
* * * ** ** * *
5902303 CGGTAGCACGTACTGATCTCGATCATGTGCTGGTGCCGCATTTTTCTTTGC
835 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * *
5902354 CGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACTGACGGTATTGGGGTTTCGATGATCCG
1 CGGGGCACCA---T----GCAT---CGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
**
5902419 GGGGGCCGGGGGGGTGTGCGCACATGATGTGTTATGGGTGCTGGTACTTGGCCCTTATATTGGCC
56 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
5902484 CCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCTTTAAAGAGCATTTAAGATTTGACAGGTT
121 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
5902549 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAAAGGTCACAAAATCTTG
186 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
5902614 TACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
251 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
5902679 CAAGTTTGGGGCCAAAA-TACCTTTCGAAAAAATTTGAAAAAATCCCAAACCGCAAAAAAGTTTT
316 CAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTC
* * * *
5902743 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAAGGAC
379 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
5902808 CATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACACAGGAATATGAAGATGTGCCTAAA
444 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
*
5902873 CCCACCTACCACCCTATCGATCCAC--C--GACGTAGTGCCCG-C-C-C--G-C--C--AGT---
509 CCCACCTACCACCCTATCGATCCACGGCTTG-CGCA-T-CCCGTCTCTCTGGCCGGCGTAGTGCC
* *
5902921 ---CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAA
571 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGA
* * * * *
5902983 TCTGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCT
635 CCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCT
* * * *
5903048 TGGGCATCCCGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCAT
700 TGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
5903113 ACAGATTTCATTCCCAGTCTGAGCAAACGAAGTTCATTCCCAGTC-AAGATCAAACTGGACCGAG
765 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAG
*** * * * *
5903177 GGTTGCAATAGTAGATGCTGGGCTCGGGCATGTGCTGGTGCCGCTTTTTTCTTCGC
830 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
5903233 CGGGGCACCAT-C-CCAGCAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCC-G
1 CGGGGCACCATGCATC-GTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * ** *
5903295 AGGGGTGTGTGCACATGATGTCCGATGGGTGCCAGAACTTGGCCCTTATATTGGCCCCCTATCCC
65 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
5903360 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTACTGCCAG
130 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
5903425 TAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTGAAATGGTCACAAAATATTGTACACTTCG
195 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * **
5903490 AGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTAC
260 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
5903555 GGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGG
325 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* * *
5903620 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTCTATGAA
390 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
5903685 TTTACAAGCCATGAAAATGGCATTGGCACATC-GAAATATGAAGATGTGCCTAAACCCACCTACC
455 TTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
5903749 ACCCTATCGATCCACTGCTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCTC
519 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCC
* * * * ** *
5903814 GCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTTCCATTCTAAGATCAGTTCAGAACGA
580 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCAGACCGA
** ** * *
5903879 GGGTTATGGCAGCAGGATGGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCA-CTTC
644 GGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTG-AGCATC
* * * * * *
5903943 CCG-CCCTCTGGCCGGTTGAGCACCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
708 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
5904007 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTACGG
773 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
* * * ** *
5904072 TAGCACATACTAGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCAT
838 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * *
5904120 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTCGGGTTCCGGCGAT-AG
1 CGGGGCACCA---T----GCATCGT---AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
5904184 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCC
56 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* ** *
5904248 CCCTATCCCTCAACAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
121 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
5904313 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
186 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
5904378 TACACTACGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAACTACAAGAATCACATCTAC
251 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
5904443 CAAGATTGGGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAA
316 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
5904508 AAATAGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
381 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* **
5904573 TTGTATGAATTTACAGGCCATAAAATAT--CATTGGCACGTAGGAAA-ATGAAGATGTGCCTAAA
446 TTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACACA-GAAATATGAAGATGTGCCTAAA
*
5904635 CCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGC
509 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GC
* * *
5904700 CCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGG
570 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGG
* * * * ** ** * * *
5904765 ACCAGACCAAGGGTTGC-AGCAGCAAGATTGATAGCACGTAGAAGGGGACCTGACCGATCCCCGG
634 ACCAGACCGAGGGTTGCGA-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGG
* * *
5904829 CTTGCGCATCCCGCCCCTCTGGCCGGCCGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
698 CTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * *
5904894 ATACGGATTTCATTCCCATTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
763 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCG
*
5904959 AGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
828 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * *
5905017 CGAGGCACCATCCCGGAGCATCGCCGGAAAACCTGACCGGCGGCGTTGGGGTTCTGGCGATCGGG
1 CGGGGCACCAT------GCAT---CGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * *
5905082 GGGACCGGGGGGGTGTGCTCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
57 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
5905147 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
122 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
5905212 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
187 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
5905277 ACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
252 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * *
5905342 AAGATTGGGGCCAAAACTCATTTCAAAAAAATTTAAAAAAAATCCCGAACCG-AAAAAGTTTCAA
317 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
5905406 AAATCGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCA
381 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5905471 TTGTATGAATTTACAAGCCATAAAATAT--CATTGGCACATAGAAATATGAAGAGGTGCCTAAAC
446 TTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
*
5905534 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCC
510 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCC
* * * * *
5905599 CGCCCGCCCGCTCGTTTCATGGGTTGTCTGAGGCATACGGAGTTCTTTCCTAGTCTAAGATCGGA
571 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGA
* * * * ** ** * ** *
5905664 TCGGACCGAGGGTTGTGGTAGCAGGATCAACAGCACGTAGAAGGGGACCCGGCCGATCCCCAGCT
635 CCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCT
* * * *
5905729 TGCGCATCCCACCCCTCTGGCCGG-TAGAGTGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCA
700 TGAGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
5905793 TACGGAGTTCATTCCCAGTCTAAGCATATGGCA-TTCTTTCCCAGTCTAAGATCGGATCGGACCG
764 TACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGAACCGGACCG
*
5905857 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
828 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * *
5905915 CGGGCCACCATCTCCAGAGCATCGCAGAGAACCTGATCGGCGTCGTTGGGGTTCCGACAATCGGA
1 CGGGGCACCA--T-----GCATCG--TAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* *
5905980 GGGGCCGAGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
57 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
5906045 CCTATCCCTCATCAAACCGT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
122 CCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * *
5906109 CGCTGCCAGTAGCCATTAAAGGGTTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATGTTG
186 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * * *
5906174 TACACTTCTAGTTTTTAGCTTAATTTTTTTGTGCATACTAACAAAAATACAAGGATTATGTCTAC
251 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * *
5906239 CAAGTTTTGGGCCAAAACTCCTTCTGAAAAAAATTTAAAAAATCTCG-AGCGCAAAAAGTTTCAA
316 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* *
5906303 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
381 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5906368 TTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACC
446 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* *
5906433 CAACTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------
511 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * **
5906490 GCCCGCTCGTTTCGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
576 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGA
5906555 CCGAGGGTTGCG
640 CCGAGGGTTGCG
5906567 GCAGCACATG
Statistics
Matches: 10663, Mismatches: 1207, Indels: 634
0.85 0.10 0.05
Matches are distributed among these distances:
842 95 0.01
843 133 0.01
844 61 0.01
845 1 0.00
846 2 0.00
851 1 0.00
853 2 0.00
854 262 0.02
855 6 0.00
861 2 0.00
863 164 0.02
864 174 0.02
865 4 0.00
866 155 0.01
867 282 0.03
868 410 0.04
869 95 0.01
870 14 0.00
871 44 0.00
872 1 0.00
873 10 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 4 0.00
879 172 0.02
880 341 0.03
881 36 0.00
882 991 0.09
883 115 0.01
884 167 0.02
885 270 0.03
886 160 0.02
887 188 0.02
888 9 0.00
889 162 0.02
890 163 0.02
891 91 0.01
892 418 0.04
893 14 0.00
894 8 0.00
895 290 0.03
896 337 0.03
897 1211 0.11
898 1746 0.16
899 113 0.01
900 36 0.00
901 228 0.02
902 413 0.04
903 662 0.06
904 201 0.02
905 2 0.00
906 7 0.00
907 11 0.00
908 167 0.02
909 6 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
CGGGGCACCATGCATCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
GATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
Found at i:5902259 original size:26 final size:26
Alignment explanation
Indices: 5902229--5902281 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5902219 ATTGACTTAG
5902229 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5902255 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5902281 G
1 G
5902282 ATTGAACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5904025 original size:26 final size:26
Alignment explanation
Indices: 5903995--5904047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5903985 GTTGACTTAG
*
5903995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
5904021 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5904047 G
1 G
5904048 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5907168 original size:699 final size:701
Alignment explanation
Indices: 5905816--5907194 Score: 2114
Period size: 699 Copynumber: 2.0 Consensus size: 701
5905806 CCCAGTCTAA
* * *
5905816 GCATATGGCATTCTTTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATATGGCATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGC
* * *
5905881 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCTCCAGAGCATCGCAGAGAA
66 CTCCGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCAGAGCATCGCAGAGAA
* * *
5905946 CCTGATCGGCGTCGTTGGGGTTCCGACAATCGGAGGGGCCGAGGGGGTGTGCTCACATGATGTGC
131 CCTGATCCGCGTAGTTGGGGTTCCGACAATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* * *
5906011 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATACCTCATCAAACCGTAAGAACTCACA
* * *
5906076 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGGGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCACTGCCAGTAGCCATTAAAAGGTCTGAAATG
* * * *
5906141 GGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACACTTCTAGTTTTTAGCTTAATTTTTTTGT
326 CGGACACTTTTTTCAAAAGGTAACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGT
* * *
5906206 GCATACTAACAAAAATACAAGGATTATGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAA
391 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAA
* *
5906271 ATTTAAAAAATCTCGAGCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
456 ATTTAAAAAATCTCGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
*
5906336 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
5906401 GGCACATAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATTGATCCACGGCTTGCGCA
586 GGCACATAGAAATATGAACATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACTTACGCA
* *
5906466 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGTTTCGTCGGTTGACTTAG
651 TCCCGTCTCTCTAGCCGACGTAGTGCCCGCTCGTTTCGTCGGTTGACTTAG
*
5906517 GCATATGG-AGTTCATTCCCAGTCTAAGATTGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATATGGCA-TTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTG
* * *
5906580 GCCTCCGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCTGA
64 GCCTCCGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCAGAGCATCG-CAGA
* * *
5906645 GAACCTGA-CCG-GTAGAATTGGGGTTCTGGCGATC-G-GGGGCCG-GGGGGTGTGCGCACATGA
128 GAACCTGATCCGCGTAG--TTGGGGTTCCGACAATCGGAGGGGCCGAGGGGGTGTGCGCACATGA
* * *
5906705 TGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCATCTTATACCTCATCAAACC-TCAAGAA
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATACCTCATCAAACCGT-AAGAA
* *
5906769 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCACTGCCAGTAGCCATTAAAAGGTCT
*
5906834 GAAATGCGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTT
320 GAAATGCGGACACTTTTTTCAAAAGGTAACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTT
* *
5906898 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTCCCAAG-TTTGGAGCCAAAACTCCTTCT
385 TTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAACTCCTTCT
* * *
5906962 GAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAG
449 GAAAAAAATTTAAAAAATCTC-G-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
* *
5907026 TCATCTTGCCATTAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
5907091 AATGGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
577 AATGGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCAACTACCACCCTATCGATCCACG
*
5907156 ACTTATGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGC
642 ACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGC
5907195 CCGCCTACCC
Statistics
Matches: 615, Mismatches: 54, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
697 6 0.01
698 89 0.14
699 370 0.60
700 12 0.02
701 113 0.18
702 25 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (701 bp):
GCATATGGCATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGC
CTCCGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCAGAGCATCGCAGAGAA
CCTGATCCGCGTAGTTGGGGTTCCGACAATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATACCTCATCAAACCGTAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCACTGCCAGTAGCCATTAAAAGGTCTGAAATG
CGGACACTTTTTTCAAAAGGTAACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGT
GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAA
ATTTAAAAAATCTCGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAACATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACTTACGCA
TCCCGTCTCTCTAGCCGACGTAGTGCCCGCTCGTTTCGTCGGTTGACTTAG
Found at i:5907420 original size:26 final size:26
Alignment explanation
Indices: 5907391--5907443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5907381 GTTGACTTAG
5907391 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5907417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5907443 G
1 G
5907444 ATCGGGTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5908351 original size:887 final size:883
Alignment explanation
Indices: 5906517--5909058 Score: 3423
Period size: 887 Copynumber: 2.8 Consensus size: 883
5906507 GTTGACTTAG
* * *
5906517 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5906582 CTCCGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCTGAGA
66 CT-CGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAG-A--ACCT--G-
* * * *
5906647 ACCTGACCGGTAGAATTGGGGTTCTGGCGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
124 ACC-GA-C-G-A-CATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCACACATGATGTGCGA
* ** *
5906712 TGGGTGCTGGTACTTGGCCGTTATATTGGCATCTTATACCTCATCAAACCTCAAGAACTCACACC
184 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACC
*
5906777 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGCG
249 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGCG
5906842 GACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCA
314 GACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
5906907 TGCCAACAAAAATACAAGGATCACGTCTCCCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTT
379 TGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAAAAAATTT
* *
5906972 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCATCTTGCCA
442 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCA
* *
5907037 TTAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
507 TAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGG
* * **
5907102 CACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTATGCATC
571 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* * ** * * * *
5907167 CCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCTACCCACCTGCTCCTTTCATCGGTTGGCTTAG
636 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAG
* * * * **
5907232 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTGCGGCAGTAGGATCGGCA
700 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGACCGAGGGTTGCAGCAGCAGGATCAACA
* ** * *
5907297 GCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
764 ACACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
5907362 CCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
829 CCGCACGCTCGTTCCGTGGGTTGACTTAGACATACGAAGTTAATTCCCAGTCTAA
** * *
5907417 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGTTAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5907482 CTCAGGCATGTGCTTGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGAC
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGAC
* *
5907547 GACATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGT
130 GACATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
*
5907612 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* * * * *
5907677 CATTTGAGATTTTATAGGTTTGCCGCCAGTAGCTATTAAACTGTCTGAAATGGGGACACTTTTTT
260 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGCGGACACTTTTTT
* * * *
5907742 CAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAA
325 CAAATGGTAACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
5907807 ATACAAGGATCATGTCTACCAAGATTGGGGCCAAAACTCATTTCAAAAAAATTTTAAAAAATCCC
389 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCGAAAAAATTTTAAAAAATCCT
* * * *
5907872 GAACCG-AAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTAATCTTGCCATAAAACTTCAC
453 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATAAAACTTCAC
* *
5907936 GTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAATAT-CATTAGCACATAGAAAT
518 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-ATGCATTGGCACATAGAAAT
*
5908000 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
582 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTG
* * * *
5908065 GCTGGTGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAAT
647 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
**
5908130 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACAACACACAAAGG
711 TCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCAGCAGCAGGATCAACAACACACAAAGG
* * *
5908195 GGGACCCGGCCGATCCTCGACTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCG
775 GGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
5908260 TTTCGTGGGTTGACTTAGACATAC-AGAGTTAATTCCCAGTCTAA
840 TTCCGTGGGTTGACTTAGACATACGA-AGTTAATTCCCAGTCTAA
* * * * *
5908304 GCTTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5908369 CTCGAGCATGTGCTGGTGCTACATTTTTCTTTG-CCAGGGCACCATCACCGGAGCATCACCGGAG
66 CTCG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGA-GGCACCAT---C---G-----CCGGAG
* * * *
5908433 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTG
118 AACCTGACCGACGACATTGGGGTTCCGGCGATC-GGGGGG-CGGGGGGTGTGCACACATGATGTG
* * *
5908498 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTCGAGAACTCAC
181 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCAC
* * *
5908563 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
*** * * *
5908628 GTTTACACTTTTTTCAGATGGTTACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
311 GCGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTG
* * * * *
5908693 TGTATGCCAAAAAAAATACAAGGATAAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
375 TGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAA
* * * *
5908758 ATTTTAAAAAATCTTGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCTTCTA
438 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
* * * *
5908823 GCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
503 GCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCA
*** *
5908888 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGACTTGCG
567 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * *
5908953 CATCCTGTCTCTCTGCCCGGCGTAGT----GCCCGCCCGCCCG--C-TCGTTTCGTTGGTTGGCT
632 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCT
*
5909011 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
697 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGG
5909059 CTACGGCAGC
Statistics
Matches: 1454, Mismatches: 162, Indels: 57
0.87 0.10 0.03
Matches are distributed among these distances:
886 4 0.00
887 370 0.25
888 95 0.07
889 268 0.18
890 36 0.02
891 1 0.00
892 1 0.00
893 3 0.00
894 3 0.00
895 60 0.04
897 4 0.00
898 35 0.02
899 21 0.01
900 310 0.21
901 69 0.05
902 91 0.06
903 83 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGACG
ACATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGCGGACACTTTTTTC
AAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCTGAA
CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATAAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCATTGGCACATAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGACTGGACCGAGGGTTGCAGCAGCAGGATCAACAACACACAAAGGGGGACC
CGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGT
GGGTTGACTTAGACATACGAAGTTAATTCCCAGTCTAA
Found at i:5909678 original size:713 final size:710
Alignment explanation
Indices: 5908311--5909771 Score: 2141
Period size: 713 Copynumber: 2.1 Consensus size: 710
5908301 TAAGCTTACG
* * * ** * *
5908311 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCGCATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTACGGCAGCACATGCTGGGCTAGAGC
* * ** *
5908376 ATGTGCTGGTGCTACATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
66 ACGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCACCGGAGAACCTGAC
* * * *
5908441 CGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGT
131 CGGCAGCATTGGGCTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGT
* * *
5908506 GCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTCGAGAACTCACACCCCCTT
196 GCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTT
* * ***
5908571 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGTTTACAC
261 AAAGAGCATGTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * * **
5908636 TTTTTTCAGATGGTTACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGTATGCC
326 TTTTTTCAAATGATCACAAAATCTCGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCACACC
* *
5908701 AAAAAAAATACAAGGATAAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
391 AAAAAAAATACAAGAATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
5908766 AAATCTTGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCTTCTAGCCATGAA
456 AAATCCTGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTAGCCATGAA
* * * * *
5908831 ACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATG
521 ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTAGCACG
*
5908896 CAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGACTTGCGCATCCTGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGACTTGCGCATCCCGT
*
5908961 CTCTCTGCCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACA
651 CTCTCTGCCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
*
5909021 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTACGGCAGCACATGCTGGGCTAGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTACGGCAGCACATGCTGGGCTAGAGC
* * ** **
5909086 ACGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
66 ACGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCACCGGAGAACCTGAC
* * * ** * *
5909151 TGGCAGCGTTGGGCTTCCGATGATC-GGGGGGCTGGGGGGGGATGTGCGCACGTGATGTGCGATG
131 CGGCAGCATTGGGCTTCCGACGATCGGGGGGGC--CAGGGGG-TGTGCACACATGATGTGCGATG
*
5909215 GGTGCTGGTACATGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
193 GGTGCTGGTACATGGCCCTTATATTGG-CCCCCTATCCCTAATCAAACCTCAAGAACTCACACCC
* *
5909280 CTTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATGTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5909345 AGACTTTTTTCAAATGATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGATCACAAAATCTCGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
5909410 CACCAATAAAAATACAAGAATCACGTCTACCAAGTTTGGGGTCAAAACTCTTTCCGAAAAAATTT
387 CACCAAAAAAAATACAAGAATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
5909475 TAAAAAATCCTGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCG
452 TAAAAAATCCTGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTAGCCA
*
5909540 TGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAG
517 TGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTAG
* * * *
5909605 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGACTTGCGCATC
* * *
5909670 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
647 CCGTCTCTCTGCCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
* * *
5909734 GAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
5909772 TTGTGGCAGC
Statistics
Matches: 665, Mismatches: 82, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
709 7 0.01
710 129 0.19
711 5 0.01
712 46 0.07
713 478 0.72
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (710 bp):
GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTACGGCAGCACATGCTGGGCTAGAGC
ACGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCACCGGAGAACCTGAC
CGGCAGCATTGGGCTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGT
GCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATGTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGATCACAAAATCTCGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCACACC
AAAAAAAATACAAGAATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCTGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTAGCCATGAA
ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTAGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGACTTGCGCATCCCGT
CTCTCTGCCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
Found at i:5909922 original size:26 final size:26
Alignment explanation
Indices: 5909886--5909938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5909876 GTTGACTTAG
*
5909886 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
5909912 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5909938 G
1 G
5909939 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:5910042 original size:14 final size:14
Alignment explanation
Indices: 5910007--5910045 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
5909997 ATATTTTTCT
*
5910007 TCACCGGGGCACCA
1 TCACCGGAGCACCA
*
5910021 TCGCCGGAGCACCA
1 TCACCGGAGCACCA
*
5910035 TCATCGGAGCA
1 TCACCGGAGCA
5910046 TCGTCGGAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.28, T:0.10
Consensus pattern (14 bp):
TCACCGGAGCACCA
Found at i:5911033 original size:907 final size:898
Alignment explanation
Indices: 5909021--5913474 Score: 5261
Period size: 907 Copynumber: 5.0 Consensus size: 898
5909011 TAGGCATACA
** * *
5909021 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTACGGCAGCACATGCTGGGCT-AGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA-GG
* * * * * *
5909085 CACGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTAA
* * * * * * *
5909150 CTGGCAGCGTTGGGCTTCCGATGATCGGGGGGCTGGGGGGGGATGTGCGCACGTGATGTGCGATG
130 CCGGCGGCATTGGGGTTCCGGTGATCGGGGGGC-CGGGGGGG-TGTGCGCACATGATGTGCGATG
* * *
5909215 GGTGCTGGTACATGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
193 GGTGCCGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
5909280 CTTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5909345 AGACTTTTTTCAAATGATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * *
5909410 CACCAATAAAAATACAAGAATCACGTCTACCAAGTTTGGGGTCAAAACTCTTTCCGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTT
* * *
5909475 TAAAAAATCCTGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCG
452 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5909540 TGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
5909605 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
5909670 CCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG-TCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
5909730 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGTGGCAGCCGGATCAACTGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCTGGATCAACAGCA
* * * ** *
5909795 CACAGAGGGGGACCCGACCGATCGCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAACGCCCG
777 CGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* ** * *
5909860 CACACTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCTAGTCTAAGCATACG
842 CACGCTCGTTTCGTGGGTTGAC-TAGGCATATAGAGTTCATTCCCAATCTAAGCATA-G
* * *
5909919 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCACATGTTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* **
5909984 ATGTACTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCACCATCATCGGAGCATCG
66 ATGTGCTGGTGCCGCATTTTTCTT--------CA-C--CG--GG-GCACCATCATCGGAGCATCG
** ** * *
5910049 TCGGAGAACCTAATTGGCGGCATTGGGGTTCCGACGATCAGGGGGCC-GGGGGGTGTGCACACAT
117 TCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACAT
* * * *
5910113 GATATGTGATGGGTGCCGGTACTTGGACCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGA
182 GATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
5910178 ACTCACACCCCCTTAAAGAGTATTTGTGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTC
247 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
5910243 TGAAATGGGGAAAGTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATT
312 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
5910308 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTT-GGGCCAAAACTCTTTCA
377 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCC
* *
5910372 GAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAATATCATGAAAAATAGAAAACGAGT
442 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
5910437 CGTCTTGCCATGAAACTTCATGTGAAGGCGTAAGGGGCCATTGTATGAATTTACAAGCCATAAAA
507 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
5910502 ATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
572 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
5910567 CCTGTGCATCCCGTCTCTCTGGCCGGCGTAAGTGCCCGCCCGCCCGCCTACCCACCCGCTTGTTT
637 CTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCG-CT------CCGCTCGTTT
* *
5910632 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTG
694 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTA
* * * *
5910697 GCAGCTGGATCAACAGCACACAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC-CCCCTC
759 GCAGCTGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTC
*
5910761 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAA
824 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TAGGCATATAGAGTTCATTCCCAA
5910826 TCTAAGCATAG
888 TCTAAGCATAG
*** *
5910837 GAGTTCATTCCCAGTCTAAGATCGGATTGGGCCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* ** * * *
5910902 ATGTGCTGGTACCGCATTTTTCTTCACCGGGGTGCCATCACCGGAGCATCGTCGTAGAAGCTAAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTAAC
* * *
5910967 CAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGTGCGCGCATGATGTGCGATGG
131 CGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGG
*
5911032 GTGCTC-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCC
194 GTGC-CGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
5911096 CTTAAAGAGAATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
5911161 CACTTTTTTCAAATGGTCACTAAATCTTGTACAGTTAGAGTTTTTAGCTGAATTTTTTTGTGTAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
5911226 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCTAAAA-TCCTTCCGAAAAAATTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCTTTCCGAAAAAATTT
* *
5911290 TGAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
452 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
5911355 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
5911420 CACACAGAAATATGAAGATGTGCTTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCAAC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
5911485 CCGTCTCTCTGGTCGGCGTAGTGCCCACCTGCCCGCT-CGCTCGTTTCGTCAGTTGGCTTAGGCA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** *
5911549 TACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTACAGCAG-TAGGATCGACAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCT-GGATCAACAGC
* * * * ** *
5911613 ACGCAGAGGGGGACCCGATCGATCCGCAGCTTGCGCATCCCGCCCCTCTAGCCGACTTTGTGCCC
776 ACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
5911678 GCACGCTCGTTTCGTGGGTTG---A--C-T-TAG-G--CA-T----A-C---G---A-
841 GCACGCTCGTTTCGTGGGTTGACTAGGCATATAGAGTTCATTCCCAATCTAAGCATAG
* *
5911713 -AGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * *
5911777 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACTTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTAAC
* * * * * * *
5911842 CGACGGCATTGGGGTTCCTGCGATCAGAGGGGCCGGGGTGGTGTGCGCAAATGATGTGCGGTGGG
131 CGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
5911907 TGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTCACACCCCCT
195 TGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
5911971 TAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATTAAAGTGTCTGGAAATGGGGAC
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGAC
* *
5912036 ACTTTTTTCAAATGGTCAC-AAATCTATGCTACACTT-AAGTTTTTTAGCTGAATTTTTTTGTGT
324 ACTTTTTTCAAATGGTCACAAAATCT-TG-TACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGC
*
5912099 A-GCCAACAAAAATACAAGGATCATGCTCTACCAAGTTTGGGGCCTAAAA-TC-TTCCGAAAAAA
386 ATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCC-AAAACTCTTTCCGAAAAAA
* *
5912161 -TTTAGAAAATTCACTGAACC-------GTTT--AAAA--A-G-------G--ATC-A-T-G---
449 TTTTA-AAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5912198 T--C-T---A---CA--AG-AGGCTTAAGGGACCATTGGTAGTGAATTTACAAGCCCATAAAAAT
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTA-TGAATTTACAAG-CCATAAAAAT
* *
5912251 GGCTATTGGCCATGCCAGGAAATATG-AGATGCTGCCTAAACCTACCTACCACCCTATCGATCCG
574 GGC-ATTGG-CACG-CA-GAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCC-
* *
5912315 ACGTCTTGCCGCATCGCGCGTCTCTCTGGCCGGCGTAGT--------GCCTGCT-CGCTCGTTTC
633 ACGGCTTG-CGCATC-C-CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCGCTCGTTTC
* * * ** * * *
5912371 GTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTAATGGTTGCAA
695 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAG
* * * * * * *
5912436 TAG-TAGGATCGATAGCACGTAGAGGGGGACCCGACCGATCCCC-GATAAT-CTCATCCCACCCC
760 CAGCT-GGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCT--TGCGCATCCCACCCC
*
5912498 TCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG---A--C-T-TAG-G--------C-
822 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAGGCATATAGAGTTCATTCCCA
5912546 A--T-A-C---G
887 ATCTAAGCATAG
* * *
5912551 GAGTTCATTCCCAGTCTGAGATCGGACCAGACCGAGGGTTGCGGTAGCACATACTGGGCTC-GGA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG-
* * * ** *
5912615 CATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCATCGAAGCATCG-CTATAGAAGCTA
65 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTC-GGAGAACCTA
* * *
5912679 ACCGGCGGCATTGGGGTTCCGGTGATCGAGGGGGCCAGGGGGTGTGTACGCGCATGATGTGCGAT
129 ACCGGCGGCATTGGGGTTCCGGTGATCG-GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGAT
*
5912744 GGGTGCTC-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
192 GGGTGC-CGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
5912808 CCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCCTTAAAGTGTCTGAAATGGG
256 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5912873 GATACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
5912938 ATGCCAA-AAAAATACAAGGATCACGTCTCCCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
* * * * * * *
5913002 TTTAAAAATCTTGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
451 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5913067 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
5913132 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTACGCAT
581 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * * *
5913197 CCCATTTCTCTAGTCAGCGTAGTGCCCGCCCGCCCGCTCGCCTGCTTGTTTCATCGATTGGCTTA
646 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT--CC-GCTCGTTTCGTCGGTTGGCTTA
* * * * *
5913262 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCTA-CAGCAGGATCAG
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG-TAGCAGCTGGATCAA
* * ** ** *
5913326 CAGCACGCAGAGGGGGACCTGGTCGATCCCCAGCTTAAGCATCCTGCCCATCTGGCCGGCTGAGC
772 CAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
** *
5913391 GCCCGCACGCTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
837 GCCCGCACGCTCGTTTCGTGGGTTGACT-AGGCATATAGAGTTCATTCCCAATCTAAGCATA-G
*
5913455 GAGTTCATTCCCCGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
5913475 CATACGGAGT
Statistics
Matches: 3064, Mismatches: 334, Indels: 310
0.83 0.09 0.08
Matches are distributed among these distances:
836 17 0.01
837 8 0.00
838 42 0.01
839 378 0.12
840 80 0.03
841 105 0.03
842 8 0.00
843 37 0.01
844 7 0.00
845 10 0.00
846 2 0.00
847 24 0.01
848 1 0.00
850 1 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 2 0.00
856 1 0.00
857 1 0.00
859 1 0.00
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
865 1 0.00
866 20 0.01
867 2 0.00
868 11 0.00
869 6 0.00
870 37 0.01
871 8 0.00
872 2 0.00
873 112 0.04
874 127 0.04
875 221 0.07
876 4 0.00
877 20 0.01
878 139 0.05
879 3 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 2 0.00
891 1 0.00
892 3 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 1 0.00
898 78 0.03
899 117 0.04
900 39 0.01
904 67 0.02
905 9 0.00
906 9 0.00
907 474 0.15
908 408 0.13
909 47 0.02
910 8 0.00
911 2 0.00
912 66 0.02
914 1 0.00
918 79 0.03
919 74 0.02
920 122 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTAAC
CGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCTGGATCAACAGCACGCA
GAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTAGGCATATAGAGTTCATTCCCAATCTAAGCATAG
Found at i:5913458 original size:26 final size:26
Alignment explanation
Indices: 5913422--5913500 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5913412 GTTGACTGAG
5913422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5913448 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5913474 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5913500 G
1 G
5913501 ATCGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5914632 original size:26 final size:26
Alignment explanation
Indices: 5914603--5914655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5914593 GTTGACTTAG
*
5914603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5914629 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5914655 G
1 G
5914656 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5915536 original size:26 final size:25
Alignment explanation
Indices: 5915498--5915549 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
5915488 GTTGACTTAG
5915498 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
5915523 GCATACGGAGTTCATTCCCATTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
5915549 G
1 G
5915550 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:5915646 original size:11 final size:11
Alignment explanation
Indices: 5915630--5915662 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
5915620 GTCGGGGCAC
5915630 CATCGTCGGAG
1 CATCGTCGGAG
5915641 CATCGTCGGAG
1 CATCGTCGGAG
5915652 CATCGTCGGAG
1 CATCGTCGGAG
5915663 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:5916443 original size:26 final size:26
Alignment explanation
Indices: 5916406--5916458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5916396 GTTGACTTAG
5916406 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
5916432 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5916458 G
1 G
5916459 ATCGGTCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5916608 original size:905 final size:896
Alignment explanation
Indices: 5913634--5916650 Score: 4110
Period size: 899 Copynumber: 3.4 Consensus size: 896
5913624 TGGGGGGGTT
* * * * * * *
5913634 GATCCCCAGCTTGCACATCCCGCCCCTCTGGTCGGCTAAGTG-CCGCACGCTCGATTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
5913698 GACTTAGGCGTAC-AGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCG
66 GACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
5913761 AATCGGA-GTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCGGCATTTTCCT
130 -GTCGGACG-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * * * * * * *
5913825 TCGCCCTGGCACCATCACCGGAGCATCA-TTGGAGCACCTGACTGGCGACATTGGAGTTCCGATG
193 TCACCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
** * *
5913889 ATCGGGAGGGCCGGGGGGGTGTGCGCACATGATTTACGATGGGTGCTTGTACTTGGCCCTTATAT
258 GCCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
* *
5913954 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCTTTAAAGAGCATTTGAGATTTTAC
322 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
5914019 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAAT-GGGACATTTTTCTCAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAA
* * * * * *
5914083 TCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAACATAAATACGAGGATCAGG
452 TCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
5914148 TCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
* *
5914213 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCATGTGAAGGCTTAAGG
582 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
5914278 GACCATTGTATGAATTTAG-AAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATGTACC
647 GACCATTGTATGAATTT-GCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
5914342 TAAACGCAGCTACCACCCTATCGATCCACGGCTTGCACAACCCATCTCTCTGGCCGGCGTAGT-G
711 TAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGG
*
5914406 CCCGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATATGGAGTTCATTCCAAGTCTAAG
776 CCC-CC--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAAGTCTAAG
* * **
5914471 ATCGAACCTGACCAAGGGTTATGGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGGCC
838 ATCGGACC-GACCAAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC
* * *
5914531 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCTCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
5914596 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
5914661 ATCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 -TCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * **
5914726 ACCGGGGCACCATCGTCGTAGCATC-CTCGGAAAACCTGACCTGTGGCATTGGGGTTCCGACGAT
195 ACCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGGC
** * * * * * **
5914790 CGGTAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTAGCCCGTATAATAT
260 CGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
5914855 CCCCCTATCCCTCATCAAACCTGGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * ** * *
5914920 TTTGTTGCCAGTAGCCGTTAAAGTGTCTAAAATGGAGACAAATTTTTCAAATCGTCACAAAATAT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCT
*
5914985 TGTACACTTAGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
455 TGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
5915050 ACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTC
520 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* * *
5915115 AAAAATCATGAAAAATAGAAAACGAGTCTTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
585 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
5915180 CACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGCAGATGTGCCTAAA
650 CATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
5915245 CGCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGGCATAGT-GCCCA
715 CGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCCC
* * * *
5915309 CCCAG-CCGCTCGTTTCGTCTGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGGAC
780 CCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAAGTCTAAGATCGGAC
** * * **
5915373 CGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGAAGCGATC
845 CG-ACCAAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC
*
5915426 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
5915491 GACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGG
66 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
5915555 ACCAGACTGAGGGTTGCGGCAGCACATACTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTC
131 -TCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * *
5915620 GTCGGGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGG
195 ACCGGGGCACCATCGCCGGAGCA---T-----CA-C-TCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
5915685 TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGC
250 TTCCGACG-GCCGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGC
5915749 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
314 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
5915814 GATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGG
379 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGG
* * *
5915879 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGAATGCCAACAAAAATACAA
444 TCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
5915944 GGATCACGTCTACCAAGTTTTGGGTCAAAACTCCTTCCGAAAAAATTTTTAAAAAATCCCGAACC
509 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCTGAACC
** * ** *
5916009 GTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGAAATGAAACTTTACGTGAA
573 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
5916074 GGCTTAAGGGACCATTGTATGAATTTGCAAGCCAT-AAAATGGCATTGGCATGCAAAAATATGAA
638 GGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
5916138 GATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTATGGCCGG
703 GATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
5916203 TGTAGTGGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CTA
768 CGTAGTGGCC-CCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAA
* * * *
5916267 GTCTAAGATCGGACCAGACCAAGGGTTACGGTAGCTGGATCGACAGCACGTAGAGGGGGACTCGA
831 GTCTAAGATCGGACC-GACCAAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
5916332 TC
895 TC
* * * * * * *
5916334 GATCCCTGGCTTGCGTATCCCACCCCTCCGCCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
5916399 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGG
66 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
5916464 TCTGGACGGAGGTTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
131 TC-GGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
5916529 ACTGGGGCACCATCGCCGGAGCATCACT-GGAGAACCT-AGCCGGCGGCATTTGGGTTCC-A-GT
195 ACCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACG-
* * * *
5916590 GAACAGGGGGCCGGGGGGCGTGTGCGCACATGATGTACGATGGGTGCTGGTGCTTGACCCT
258 G-CCGGGGGGCCGGGGGG-GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCT
5916651 ATTCCTAGTC
Statistics
Matches: 1861, Mismatches: 226, Indels: 64
0.87 0.11 0.03
Matches are distributed among these distances:
894 128 0.07
895 171 0.09
896 4 0.00
897 44 0.02
898 236 0.13
899 480 0.26
900 1 0.00
901 2 0.00
902 1 0.00
904 1 0.00
905 380 0.20
906 116 0.06
907 2 0.00
908 133 0.07
909 162 0.09
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (896 bp):
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
TCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
CCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGGCC
GGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTT
GTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
GCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCCCC
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAAGTCTAAGATCGGACC
GACCAAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC
Found at i:5918419 original size:869 final size:868
Alignment explanation
Indices: 5916664--5919114 Score: 3065
Period size: 895 Copynumber: 2.8 Consensus size: 868
5916654 CCTAGTCTAA
* * *
5916664 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGAGCAAGGGTTGCGGCCAGCACAATGCT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCAAGGGTTGCGG-CAGCAC-ATGCT
* * ** ** *
5916728 GGCTC-GG-AGGTGCTGG-GCCGCATTTTTCCTACGCCCGGCACCATCACCGGAGCATTC-TATG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGCAGGGCACCATCGTCGGAGCA-TCGT-CG
* * * *
5916789 GAGAACCTGGACCCGACGGCATTGGAGTTTCAGCGATCGGGGGGGTCGGGGGCTGTGTGCGCACA
126 GAGAACCT-GA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG--GTGTGCGCACA
*
5916854 GTGATGT-ACGATGGGTGCT-GTACTTGG-CCTTATGACTTGGCCCCCTATCACT-ATCAAACCT
187 -TGATGTGA-GATGGGTGCTGGTACTTGGCCCTTAT-A-TTGGCCCCCTATCCCTCATCAAACCT
5916915 CGAGGAACTCACACCCCCTTGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCCGA
248 CGA-GAACTCACACCCCC-T-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCC-A
* *
5916980 TTTGAAGGTTGTCTAAAATGGGGACATTTTTTCAAATGTCAC-AAATCTTGGTACACTTCGAGTT
308 -TT-AAAG-TGTCTGAAATGGGGACATTTTTTCAAATGTCACAAAATCTT-GTACACTTCGAGTT
5917044 TTTAGCT---A--------CATGCCAA-TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
369 TTTAGCTGAAATTTTTTTGCATGCCAACT-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
5917097 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAGCTCAAAAAGTTTTAAAAATTGTGAAAAA
433 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAA
* *
5917162 TAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTAT-AA-TTC
498 TAGAAAAAGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
5917225 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCT
563 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG---CTAAACCCACATACCACCCT
* * *
5917290 ATCGATCAATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCTGTCTGCCCA
625 ATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTG-CCA
* * * *
5917355 TTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTATAAGACCGGACCGGATCGAG
689 -TCGTTTCGTCGGTTGGCATAGGCATACAGAGTTCATTACCAGTATAAGACCGGACCAGACCGAG
* * * * * *
5917420 GGCTACAGCAGTCGAATTGGCAGCACATAGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCTC
753 GGCTACAACAGTCGAATCGACAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCC
* *
5917485 ACCCCTCTGGCCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTGACTTAG
818 ACCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAG
* * * *
5917536 GCATATGGAGTTCATTGCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGTACATGCTAG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCAAGGGTTGCGGCAGCACATGCT-G
* *
5917600 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGCACCATCGTCGGAGCATCGTCGGAG
** * * * *
5917665 AACCTGACCGGTGACATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5917730 AGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5917795 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5917860 GGGGACATTTTTTTCAAATGATCACAAAATCCTGTAGACTTCGAGTTTTTAGCTGAAATTTTTTG
324 GGGGACA-TTTTTTCAAATG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT-
* *
5917925 TGCATGCCAACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAA
386 TGCATGCCAACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
5917990 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAGAATAGAAAAAGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTT
5918055 GCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
5918120 TTGGCACGTAGAAATATGAAGATG-TAACCCCACATGCCACCCTATCGATCCATGGCTTGCGCAT
581 TTGGCACGCAGAAATATGAAGATGCTAAACCCACATACCACCCTATCGATCCATGGCTTGCACAT
*
5918184 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTG-C-TCGTTTCGTCGGTTGGCTTAGG
646 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGCCATCGTTTCGTCGGTTGGCATAGG
* ** * * *
5918247 CATACAGAGTTCATTACCAGTCTAAGATTGGACCAGACCGAGGGCTGCAACAGTCGGATCGACGG
711 CATACAGAGTTCATTACCAGTATAAGACCGGACCAGACCGAGGGCTACAACAGTCGAATCGACAG
* *
5918312 CACATAGAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
776 CACATAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCGACTGAGCGC
*
5918376 CCGCATGCTCGTTTCGTGGGTTGACTTAG
840 CCGCATGCTCATTTCGTGGGTTGACTTAG
5918405 GCATATGGAGTTCATTCCCAGTCTAGGCATATGGAGTTCATTGCCAGTCTAAGATCGAACCGGAC
1 GCATATGGAGTTCATTCCCAGTCT----A-A--GA--TCA--G-CA--C------C--A---GAC
* * * * *
5918470 CAAGGGTTCCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATGTTTCTTCGCCAGGT
41 CAAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGG
* * * *
5918535 CACCATCGTCGGAGCATTGTCAGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGG
104 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
5918600 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTT
169 CCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TA
* * ** * *
5918665 TCCCTCATCAAACATTGAGAACTCACACCCCCTTAAATCGCATTTGAGGTTGTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
5918730 CCAGTAGCCATTAGAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCAAAT-GTCACAAAATCTTGTACAC
* * *
5918795 TTCGAGTTTTTAACTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
361 TTCGAGTTTTTAGCTGAAATTTTTT-TGCATGCCAACTAAAATACAAGGATCACGTCTACCAAGT
* * * * *
5918860 TTAGGGCCAAAAC-CCTTCCGAATAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATC
425 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATC
* * * *
5918924 GTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGCA
490 GTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTA
*
5918989 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG-AGATGTGCCTAAACCCACCT
555 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA--TG-CTAAACCCACAT
* * * * * **
5919053 ACCACCCTATCGATCCACGGCTTGCACGTCCCGCCTTTCTAGCCGATGTAGTGCCCGCCCGC
617 ACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
5919115 TCGCCCGCCT
Statistics
Matches: 1377, Mismatches: 140, Indels: 98
0.85 0.09 0.06
Matches are distributed among these distances:
861 16 0.01
862 15 0.01
863 26 0.02
864 7 0.01
865 3 0.00
866 39 0.03
867 1 0.00
868 44 0.03
869 211 0.15
870 11 0.01
871 42 0.03
872 48 0.03
873 99 0.07
874 29 0.02
875 156 0.11
876 5 0.00
877 43 0.03
878 3 0.00
880 1 0.00
882 1 0.00
884 1 0.00
890 1 0.00
892 1 0.00
894 3 0.00
895 316 0.23
896 192 0.14
897 1 0.00
898 62 0.05
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (868 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCAAGGGTTGCGGCAGCACATGCTGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACATTTTTTCAAATGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGCAT
GCCAACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCAT
GAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGCTAAACCCACATACCACCCTATCGATCCATGGCTTGCACATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGCCATCGTTTCGTCGGTTGGCATAGGCATAC
AGAGTTCATTACCAGTATAAGACCGGACCAGACCGAGGGCTACAACAGTCGAATCGACAGCACAT
AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCAT
GCTCATTTCGTGGGTTGACTTAG
Found at i:5918431 original size:26 final size:26
Alignment explanation
Indices: 5918402--5918455 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5918392 TGGGTTGACT
5918402 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATATGGAGTTCATTCCCAGTC
*
5918428 TAGGCATATGGAGTTCATTGCCAGTC
1 TAGGCATATGGAGTTCATTCCCAGTC
5918454 TA
1 TA
5918456 AGATCGAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (26 bp):
TAGGCATATGGAGTTCATTCCCAGTC
Found at i:5920010 original size:26 final size:26
Alignment explanation
Indices: 5919974--5920026 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5919964 GTTGACTTAG
5919974 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
5920000 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5920026 G
1 G
5920027 ATTGAAGCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5920893 original size:26 final size:26
Alignment explanation
Indices: 5920864--5920919 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5920854 TGGGTTGACT
*
5920864 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
5920890 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
5920916 TAAG
1 TAAG
5920920 ATTGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:5921479 original size:889 final size:887
Alignment explanation
Indices: 5919298--5923419 Score: 5182
Period size: 890 Copynumber: 4.6 Consensus size: 887
5919288 TACGGAGTTC
* **
5919298 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGTACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
5919363 CCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
5919428 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
5919493 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATACTTCCAAAAAAGTT
195 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAAATT
** * * * *
5919558 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCCTCAAAAATAGAAAACGAGTTGTCTTACC
259 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
5919623 ATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
324 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
5919688 GCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGTTTACGCAT
389 GCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
5919753 CCCGTCTCTCTGGCCGGTGTAGTG-CCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
454 CCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *** * *
5919817 ATACGAAGTTCATTCCTACTCTAAGATCAGATTGGACCAAGGGTTGTGGTAGCAGGATCGACAGC
519 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * *
5919882 ACACAGAGGGGGACCCGACTGATCCCTGGCTTACGCATCCCGCCCCTCTAGTCGGTTGAGCGCCT
584 ACACAGAGGGGGAACCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCT
* * **
5919947 GCACGCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
649 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
5920012 CATTCCTAGTCTAAGATTGAAGCGGACCGAGGGTTGTAGCAGCACATGCTGGGCTTGGGCATGTG
714 CATTCCCAGTCTAAGATTGGA-CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* *
5920077 CTGGTGCCGCATTTTTCTTCGTCAGGGAACCAT---C---GC--CA---GAGAACCTGACCGGCG
778 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
* * * *
5920131 GCATTGAGGTTTCGACGATCGGGGGGGTCGAGAAGGGTGTGCGCACATGATGTGCGA
843 GCATTG-GGGTT---C-A-C-GGTGGAT---G-A-GGTGTACGCACATGATGTGCGA
*
5920188 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
5920253 CCCTTAAAGAGTAGTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5920318 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
5920383 ATACAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CATTCCAAAAAAAT
195 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAA-ATCCTTCCAAAAAAAT
* ** * *
5920447 TTTTAAAAATTTCGAATCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
258 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
5920512 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
323 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** ** * *
5920577 GGCACATAGAAATATGAAGATGTACCTAAACCCACCTGTCGCCCTATCGATCCACGGCTTGCGTA
388 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
5920642 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
453 TCCCGTCTCTCTGGCCGGCGTAGTG-CC-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
5920707 AGGCATACGGAGTTCATTCCCAGACCAAGATCCGACCGGATCGAGGGCTGCT-GCAGTAGGATCG
515 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-TGGCAGCAGGATCG
*** * *
5920771 GCAGCATGTAGA-GGGGAACCGACTGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
579 GCAGCACACAGAGGGGGAACCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
5920835 TGCCCGCATGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACA
644 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * *
5920900 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAACACATGCTGGGCTCGGGA
709 GAGTTCATTCCCAGTCTAAGATTGGA-CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
*
5920965 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
773 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* *
5921030 CGGCGGCATTGGGGTTC-CGGT-GATTAGGTGTACGCCCATGATGTGCGA
838 CGGCGGCATTGGGGTTCACGGTGGATGAGGTGTACGCACATGATGTGCGA
* ** *
5921078 TGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACT
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * * **
5921143 CCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTGCCAGTACCCATTAAAGTATCCAAAATGGG
66 CCCTTAAAGAGCATT-GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5921208 GTCAC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAAGTTTTTAGCTGAATTTTTTTTTG
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTG
* * * *
5921271 CATGCCAACGAAAATACAAGGATCATCTCTACCAACTTTGGCGCCAAAACTCCTTCCAAAAAAAT
194 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG-GCCAAAAATCCTTCCAAAAAAAT
* * *
5921336 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTAC
258 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5921401 CATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
323 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
5921466 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCA
388 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
5921531 TCTCGTCTCTCTGGTCGGCGTAGTG-CCCGCCCGTCCGGCTGCTCGTTTCGTTGGTTGGCTTAGG
453 TCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** ** * *
5921595 CATACAGAGTTCATTCCCAGCCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATTGGCAG
518 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAG
* * * * *
5921660 CACACAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCACCCGTCTGG-CGGCTGAGCAC
583 CACACAGAGGGGGAACCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
5921723 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
647 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* * * * *
5921788 TTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGTAGCACAT-CTTGGGCTCGGGCAT
712 TTCATTCCCAGTCTAAGATTGGA-CAGACCGAGGGTTGCAGCAGCACATGC-TGGGCTCGGGCAT
* * * * ** *
5921852 GTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACAG
775 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG
* * * *
5921917 GCGGCATTGGGGTTCTGACGATCGGTGGGGCTGGGGGGTATGCACACATGATGTGCGA
840 GCGGCATTGGGG-T-T--C-A-CGGT--GGATGAGGTGTA--CGCACATGATGTGCGA
*
5921975 TGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * * *
5922040 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCGTTAAAGCGTCCGAAATGAG
66 CCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
5922105 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCCAGTTTTTAGCTGAAATATATTTGTG
130 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTG
* * * * *
5922170 CATGCCAACAAAAATACAAGGATCAGGTCTAATC-AGTTTGGGCCCAAAATGCCTTCCGAAATAA
194 CATGCCAACAAAAATACAAGGATCATGTCT-ACCAAGTTTGGGCCAAAAAT-CCTTCCAAAAAAA
* * *
5922234 TTTTAAAAAATCTCGAACCGCGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
257 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5922299 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
322 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
5922364 TGGCATGCAGAAATATGAAGATGCGCCCTAAACTCCCACCTACCACTCTATTCGATCCACGGCCT
387 TGGCATGCAGAAATATGAAGATG-TACCTAAA--CCCACCTACCACCCTA-TCGATCCACGGCTT
*
5922429 GCGGCATCACCGTCCTCTTCTGGGCCGGCGTAGTGCCTGGCCTGCCGCGTCCGCCCCTCCCAGCT
448 GC-GCATC-CCGT-CTC-TCT-GGCCGGCGTA--G--T-GCC--CCGC--CCG-CCCGCCC-GCT
* * *
5922494 CGTTTCGTCGGTTTGCTTA-GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAAACCAAGGG
497 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * * * *
5922558 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG-ACCTGGCCGATTCCCGGCTTTCGCACCCCG
562 TTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGAACC-GACTGATCCCCGGCTTGCGCATCCCG
5922622 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
626 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
5922687 TCCCAG--T---C-T--A-AG---A-T--C-G-----GA-T---CAGACCGAGGGTTGCGGCAGC
691 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACAGACCGAGGGTTGCAGCAGC
* * * **
5922727 ACATGCTGGGCTCCGGCATGTGCTGGTGCCCCA-TTTTCGTTCATCGGGGCACCATCATCGGAGC
756 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGCCGGAGC
* * * * *
5922791 ATCACCGGAGAACCTGACCGACGGCATTGAGGTTCGACGGATCGGGGGGGTCGGGGGGTGTTCGC
820 ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC-ACGG-T-----GGAT---GAGGTGTACGC
*
5922856 ACATGATGTGTGA
875 ACATGATGTGCGA
* * *
5922869 TGGGTGCTCGTACTGGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
5922934 CCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGAT-TGAAATGG
66 CCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG-TCTGAAATGG
5922998 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
129 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
5923063 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAAAT
194 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CCAAAAATCCTTCCAAAAAAAT
* * ** * * *
5923128 TTTAAAAAATCCTGAACTGCAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAGTCGTTTTGC
258 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
5923193 CATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTGCAAGCCATAAAAATGGCATT
323 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
5923258 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
388 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
5923323 TCCCGTCTCTCTGGCCGGCGTAGTGTCTACCCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTT
453 TCCCGTCTCTCTGGCCGGCGTAGTG-C--CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
5923388 AGGCATACGGAGTTCATTCCCAGTCTAAGATC
515 AGGCATACGGAGTTCATTCCCAGTCTAAGATC
5923420 GGCCTGGACC
Statistics
Matches: 2825, Mismatches: 324, Indels: 179
0.85 0.10 0.05
Matches are distributed among these distances:
876 19 0.01
877 35 0.01
878 3 0.00
879 1 0.00
880 6 0.00
882 2 0.00
884 11 0.00
885 286 0.10
886 40 0.01
887 6 0.00
888 8 0.00
889 325 0.12
890 597 0.21
891 2 0.00
892 14 0.00
893 404 0.14
894 371 0.13
895 12 0.00
896 9 0.00
897 132 0.05
898 52 0.02
899 203 0.07
900 9 0.00
901 2 0.00
902 15 0.01
903 18 0.01
904 28 0.01
905 4 0.00
906 3 0.00
907 4 0.00
908 10 0.00
910 1 0.00
911 2 0.00
912 1 0.00
913 1 0.00
914 2 0.00
915 1 0.00
916 4 0.00
918 6 0.00
919 97 0.03
920 79 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCAC
ACAGAGGGGGAACCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATTGGACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCA
TTGGGGTTCACGGTGGATGAGGTGTACGCACATGATGTGCGA
Found at i:5921782 original size:26 final size:26
Alignment explanation
Indices: 5921752--5921804 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5921742 GTTGACTTAG
5921752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5921778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5921804 G
1 G
5921805 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5924030 original size:718 final size:718
Alignment explanation
Indices: 5922648--5924063 Score: 2255
Period size: 718 Copynumber: 2.0 Consensus size: 718
5922638 AGCGCCTGCA
*
5922648 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
*
5922713 AGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCCCATTTTCGTTCATCGGGGCA
66 AGGGTTGCGACAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCCCATTTTCGTTCATCGGGGCA
* *
5922778 CCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCGACGGATCGGGGGGGTC
131 CCATCATCGGAGCATCACCGGAGAACCTAACCGACGGCATTGAGGTTCGACGGATCGGGGGGGCC
* * ** **
5922843 GGGGGGTGTTCGCACATGATGTGTGATGGGTGCTCGTACTGGGCCCTTATATTGGCCCCCTATCC
196 GGGCGGTGTGCGCACATGATGTGCAATGCATGCTCGTACTGGGCCCTTATATTGGCCCCCTATCC
**
5922908 CTCGTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCA
261 CTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCA
5922973 GTAGCCACTAAAGTGATTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
326 GTAGCCACTAAAGTGATTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
5923038 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
391 GAGTTTCTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTG
* * * * ** *
5923103 GGCCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTGGAAAATCGTG
456 GGCCCAAAAACCCATCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
*
5923168 AAAAATAAAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGA
521 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGA
* * *
5923233 ATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
586 ATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
5923298 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGTCTACCCGCCCGCCC
651 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCTACCCGCCCGCCC
5923363 GCC
716 GCC
* * * *
5923366 CGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCTGGACC
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACC
* *
5923430 GAGGGTTGCGACAGCACATGCTGGGCT-TGAGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGG
65 GAGGGTTGCGACAGCACATGCTGGGCTCCG-GCATGTGCTGGTGCCCCA-TTTTCGTTCATCGGG
* ** * ** *
5923493 GCACCATCGTCGGAGCATCGTCGGAGAACCTAACTGGTGGCATTGAGGTTCCGGC-GATCGGGGG
128 GCACCATCATCGGAGCATCACCGGAGAACCTAACCGACGGCATTGAGGTT-CGACGGATCGGGGG
* * *
5923557 GGCCGGGCTGTGTGCGCACATGATGTGCAATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 GGCCGGGCGGTGTGCGCACATGATGTGCAATGCATGCTCGTACTGGGCCCTTATATTGGCCCCCT
*
5923622 ATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCT
257 ATCCCTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCT
* * *
5923687 GCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
322 GCCAGTAGCCACTAAAGTGATTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
5923752 CTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAG
387 CTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAG
* * * * *
5923817 TTTGGGGCCAAAACCCCATGCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
452 TTTGGGCCCAAAAACCCATCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
5923882 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
517 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGT
5923947 ATGAATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
5924012 TACCACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAG
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
5924064 CGCCCGCCCG
Statistics
Matches: 637, Mismatches: 57, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
717 2 0.00
718 627 0.98
719 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
AGGGTTGCGACAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCCCATTTTCGTTCATCGGGGCA
CCATCATCGGAGCATCACCGGAGAACCTAACCGACGGCATTGAGGTTCGACGGATCGGGGGGGCC
GGGCGGTGTGCGCACATGATGTGCAATGCATGCTCGTACTGGGCCCTTATATTGGCCCCCTATCC
CTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCA
GTAGCCACTAAAGTGATTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTCTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTG
GGCCCAAAAACCCATCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGA
ATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCTACCCGCCCGCCC
GCC
Found at i:5924298 original size:26 final size:26
Alignment explanation
Indices: 5924262--5924314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5924252 GTTAACTTAG
5924262 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5924288 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5924314 G
1 G
5924315 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5924429 original size:40 final size:40
Alignment explanation
Indices: 5924374--5924449 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
5924364 GCTGGTGCCA
*
5924374 TATTTTTCTTCACCGGGACACCATTGCCGGAGCATCACCG
1 TATTTTTCTTCACCGGGACACCATCGCCGGAGCATCACCG
*
5924414 TATTTTTCTTCACCGGGACACCATCGTCGGAGCATC
1 TATTTTTCTTCACCGGGACACCATCGCCGGAGCATC
5924450 GTTGGAGAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.29
Consensus pattern (40 bp):
TATTTTTCTTCACCGGGACACCATCGCCGGAGCATCACCG
Found at i:5925230 original size:26 final size:26
Alignment explanation
Indices: 5925194--5925246 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5925184 GTTGACATAG
5925194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5925220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5925246 G
1 G
5925247 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5926521 original size:897 final size:890
Alignment explanation
Indices: 5923390--5931083 Score: 8686
Period size: 880 Copynumber: 8.6 Consensus size: 890
5923380 GTTGGCTTAG
5923390 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCTGGACCGAGGGTTGC-GACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCAG-CAGCACATGCTG
* * * * *
5923453 GGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATCGTCGG
64 GGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACT-GGGGCACCATC--CTGAGCATCGCCGG
* * * * * ** *
5923517 AGAACCTAACTGGTGGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGCTGTGTGCGCACATGATG
126 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATG
* ** * *
5923582 TGCAATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
5923647 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5923712 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
5923777 TATGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCATGCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
** *
5923842 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5923907 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5923972 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** * *
5924037 CGCATCCTGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCTCGCCCACCGGCTCGTCGGTTAGATTA
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCCC-TCGTTTCGTCGGTTGGCTTA
* * ** * * * * * *
5924102 GGCGTGCGGAGTTCATTCCCAGTTTAAGATTGGATCGGACTGAA-GGTTACGGTAGCAGGATTGG
706 GGCATGC-GAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTTGCGGCAGCAGGATCGG
* * * * * * * * *
5924166 TAGCACGTAGAGGGGGACCCGACCTATCCCCGGCTTGCGCGTCCTGCCCTTCTGGCTGGCTGAGC
769 CAGCACGCAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
5924231 GCCTGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 GCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5924288 GCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
5924353 CTCGAGCATGTGCTGGTGCCA-TATTTTTCTTCACCGGGACACCATTGCCGGAGCATCACCGTAT
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTT--------CA-C--TG--GG-G---CACC--A-
** ** *
5924417 TTTTCTTCACCGGGACACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGTAGCATTGGGGTTT
110 ------T-----------C--C-T--GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * *
5924482 CAACGATCGGGGGGGACGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
153 CGACGATCGGGGGGG-CCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
5924547 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
217 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
5924612 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCA
282 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
5924677 CAGAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGA
347 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * * ** * *
5924742 TCATGTCTACCAAGTTTGGGACCAAAAATCTTTTCAAAAAAATTAAAAAAAATCCCGGACCGCAA
412 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
** * * ** *
5924807 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTATCTTGCCATGAAACTTCACGTGAACGCT
477 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
5924872 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
542 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
5924937 TGCCTAAACCCACCTACCACCATATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACTTA
607 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
5925002 GTGCCCGCCCG--CTCATTTCGTCGATTGGCTTAGGCA-GACGAAGTTCATTCCCAGTCTAAGAT
672 GTGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATG-CG-AGTTCATTCCCAGTCTAAGAT
* * **** * * *
5925064 CGGACCAGACCGAGGGTTGCAATGGCAGGATCGACAGCACGCAGAGGGGGGCTCGACCGATCACC
735 CAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGACCGATCCCC
* * * * *
5925129 GACTTGCGGATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCG-TTACCTGGGTTGACATA
800 GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTA-GTGGGTTGACTTA
*
5925193 GGCATACAGAGTTCATTCCCAGTCTAA
864 GGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5925220 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCATCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
5925285 CTCGGGCATGTGCTCGTGCCGCATTTTTCTTCGCCGGGGCACCAT-C---G--T---CGGAGAAC
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACTGGGGCACCATCCTGAGCATCGCCGGAGAAC
* * *
5925341 CTGACCGGCGGCATTGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGT-TCGCACATGATGTGTG
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGT-GCACATGATGTGCG
5925405 ATGGGTGCTGGTACTTGGCCCTTAT-TTGGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 ATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
5925469 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5925534 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTTG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTG
* *
5925598 TGCAAGCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
5925663 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5925728 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5925793 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
5925858 CATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGTTCATTTGGTCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCC--TCGTTTCGTCGGTTGGCTTAG
* * * *
5925923 GCATGCTGAGTTCATTCCTAGTCTAAGATCAGACCAGATCAAGGATTGTGGCAGCAGGATCGGCA
707 GCATGC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * * **
5925988 ACACGTAGAGGGGGACTCGGCCGATCCCCTACTTGCGCATCCC-ACCCTCTGGCCGGCTGAATGC
771 GCACGCAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5926052 CTGCTCGCTCATTTAGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
836 CCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5926107 GCGTACGAAATTCTTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
** *
5926172 CTCAAGCATGTGCTTGTGCAGCATTTTTCTTCACTGGGGCACCATCACTTGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACTGGGGCACCATC-C-TGAGCATCGCCGGAGA
* * ** * *
5926237 ACCTGACCGACGGCATTAGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGTGGACTTGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGC
* * **
5926301 GGTGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
5926366 -CCCCTTCAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 CCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
5926430 CGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTGGCTGAATTGTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
5926495 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCATGGGGCCAAAACACCTTTCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** * *
5926560 ATTTTAAAAAATCTTGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
5926625 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5926690 TTGGCACGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
5926755 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--TTCGTTTTGTCGGTTGGCTCAGGCATAC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATGC
* * * ** * * *
5926818 AGAGTTCATTCCCAATCTAAGGTCAAACCCA-ACTGAGGGTTGCAGTAGCAGGATCGGCAGCATG
713 -GAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * ** * *
5926882 CAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCAACCCTTTGGCCGACTGAGCGCCCGCA
776 CAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
5926947 CGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
841 CGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5926997 GCATACAGAGTTCATTTCCCAATCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCATATGCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGG
* * ** * * *
5927062 GCTTGGGCATGTGCTGGTGCCA-CATTTTTCTTC-GTCGACGCGCCATCGCCGGAGCATCGCCAG
65 GCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACT-GGGGCACCAT--CCTGAGCATCGCCGG
* * * * *
5927125 AGAACCTGACCGGCGGCATTGGGGTTTCGGCAATCGGGGGGCCCGGGGGGGTGTGCGCACATGAT
126 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGAT
**
5927190 GTGCGATGGGTGCTGGTACTTGGATCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
5927255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5927320 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTT
* *
5927384 TTTGTGCAAGCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
384 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * *
5927449 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAATATTGAAAACGAGTTG
449 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
5927514 CCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5927579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
5927644 TACGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCG--CTCATTTCGTCGATTGGCTTAGGC
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGC
* **** *
5927707 A-GACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAATGGCAGGATCGACAG
709 ATG-CG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
5927771 CACGCAGAGGGGGGCTCGACCGATCACCGACTTGCGGATCCCGCCCCCCTGGCAGACTGAGCGCC
772 CACGCAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
5927836 CGTACGCTC-ATTACCTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAA
837 CGCACGCTCGTTTA-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5927890 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCATCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
5927955 CTCGGGCATGTGCTCGTGCCGCATTTTTCTTCGCCGGGGCACCAT-C---G--T---CGGAGAAC
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACTGGGGCACCATCCTGAGCATCGCCGGAGAAC
* * *
5928011 CTGACCGGCGGCATTGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGT-TCGCACATGATGTGTG
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGT-GCACATGATGTGCG
5928075 ATGGGTGCTGGTACTTGGCCCTTAT-TTGGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 ATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
5928139 CCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT-AAATT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-T
* * *
5928203 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCAAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * ** * *
5928268 TGCACACCAAAAAAAATACAAGGA-CACATCTACCAAGTTTGGCACCAAAACTCCTTCCCAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAA
** ** * * *
5928332 AATTTTAAAAAATCCAAAACCAAAAAAAATTTTGAAAATCATGAAAAATAGAAAACGTGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
5928397 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5928462 ATTGACATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5928527 GCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCG--CTCGTTTCGTCGGTTGGCTTAGGCTTA
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATG
* * * *
5928590 CGGACTTCATTCCCAGGCTAAGATCCA-ACCGGA-CAGAGGGTTGCGGCAGCAGGATTC-GCATC
712 C-GAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCA-AGGGTTGCGGCAGCAGGA-TCGGCAGC
* * * * * *
5928652 ACACAAAGGGGGAACT-GACTGTTCCCCGACTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCC
773 ACGCAGAGGGGG-ACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
5928716 CGCACGCTCGTTTCGTGGGTTGACTTAGTCATACGAAGTTCATTGCCAGTCTAA
837 CGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5928770 GCATACGAAGTTCATTCCCAGTCTAAGATTGGGCCAGATCGAGGGTTGCGGTCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACATGCTGG
* * * * *
5928835 GCTCGGGCATGTGCTAGTGCCA-CATTTTTCTTCACCGGGGCACTATCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACTGGGGCACCATC--CTGAGCATCGCCGGA
** * * *
5928899 GAACCTGACCACCGGCATTGGGGTTCC-ATGGATCGAGGGCGGCCGCCGGTGG-GTGTGCGACAT
127 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GGGGGGCCG--GGGGGTGTGTGC-ACAT
* **
5928962 GATGTGCGATGGGTGCT-GTCACTTGGCCCTTATCATTGGTCCCCTATCCCTCATCAAATGTCAA
187 GATGTGCGATGGGTGCTGGT-ACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCAA
* * * * *
5929026 -AACTCACACCCCCTTAAAGAGCATTTAATATTTTACAGAGTTTGCTTACCAGAAGCAATTAAAG
250 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGC-TGCCAGTAGCCATTAAAG
* *
5929090 TGTCTGAAATGCGGACACTTTTTTCAAATGGTCAACAAAATCTTGTACCACTTTTGAGTTTTTAG
313 TGTCTGAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTA-CAC-TTCGAGTTTTTAG
*
5929155 CTGAATTTCTTTTGTG-ATGCCAAAAAAAAATACAATGGAATCACGTCTACCAAG-TT-GGGCTA
375 CTGAATTT-TTTTGTGCATGCC-AAAAAAAATACAA-GG-ATCACGTCTACCAAGTTTGGGGCCA
* * * *
5929217 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGTTAAAAAGTTTTTGAAAATCGTGTGAA
436 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAG-TTTTGAAAATC--GTGAA
* *
5929282 AAATA-TAAACGAGTCG--TTGCCAT-AAACTTCACCTGAAGGCTTAA-GGACCATTGTATGAAT
497 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5929342 TTACAA-CCATAAAAAAAGGCCATTGGCATGCAGGAAATTATGAAG-TGTGGCCTAAACCCAGCC
562 TTACAAGCCAT-AAAAATGG-CATTGGCATGCA-GAAA-TATGAAGATGT-GCCTAAACCCA-CC
* *
5929405 GACCACCCTATCGATCCACGACTTGCGCACTCCCGTTCTCTCTGGCCGACGTAAGTGCCCGGCCC
621 TACCACCCTATCGATCCACGGCTTGCGCA-TCCCG-TCTCTCTGGCCGACGT-AGT-----GCCC
* * * *
5929470 GCCCGCGCCGCTCGTTTCGT-TGTTTG-TTAGGCAT-AGAGTTTCATTCCCCAGTCTAAGATCGG
678 G-CC-CGCC-CTCGTTTCGTCGGTTGGCTTAGGCATGCGAG-TTCATT-CCCAGTCTAAGATCAG
* * * * * * * *
5929532 ACC-GAATCAAGGGTTACGACAGTAGGATTAGGCAACACGTTAGA--GGGACTC-AGTC-ATCCC
738 ACCAG-ACCAAGGGTTGCGGCAGCAGGA-TCGGCAGCACG-CAGAGGGGGACTCGA-CCGATCCC
* * * **
5929592 CGGCTTGGGCATCCCGCCCCTGCTGGTCGGGCTTGAGCGCTTGCACGCTCGTTTCA-T-GGTTGA
799 CGACTTGCGCATCCCGCCCCT-CTGG-CCGGC-TGAGCGCCCGCACGCTCGTTT-AGTGGGTTGA
*
5929655 CTTA-GCATTATGGAGTTCCATTTCCCAGTCTAA
860 CTTAGGCA-TACGGAGTT-CA-TTCCCAGTCTAA
* * * * * *
5929688 GCATTCGGATTTCATTCCCAGTCT-AG-TCGGACCGGAGCCACAGGGCCTAC-GGAGCACCATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CC-GAGGG-TTGCAGCAGCA-CATGC
* ** *
5929750 TGGGCTCGGGCATGTGCTGGTGTCA-TATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTC
62 TGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACTGGGGCACCATC--CTGAGCATCG-C
* * * * *
5929814 GGAGCATTGCTAGAGAACCTGACCGGTGGCATTAGGTTTCCGACGATCGAGGGGGACGGGGGGTG
123 ----C---G---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* * * *
5929879 TGCGCACTTGATGTGCGTTGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
178 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
5929944 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
243 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5930009 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTT
308 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
5930074 AGCTGAAGTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAGGTTTGGGGCCGAA
373 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
5930139 ACTCC-TTCTGAAAAAATTTTAAACAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAATATT
438 ACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
* * *
5930203 GAAAACGAGTTGCCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACA
502 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
5930268 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTAT
567 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
5930333 CGTTCCACGGCTTGTGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCCCTTCCATCCGCTCG
632 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----C--CC-GCC-CTCG
*
5930398 TTTCGTCGGTTGGCTTAGGCATATG-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
689 TTTCGTCGGTTGGCTTAGGC--ATGCGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
* * * * * * * * *
5930462 TGAGGCATCTGGATCAGCAGCACGAAGA-GGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCC
752 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCC
* * *
5930526 CCTCTGGCCGGCTGAGCGCCCGCACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
817 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTC
5930591 CCAG--T--
882 CCAGTCTAA
* ** *
5930596 -C-TA---AG---ATT----G-----GACCGGA-C---CCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
5930640 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGG-------C--AGCATCACCGGAGAA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACT-GGGGCACCATCCTGAGCATCGCCGGAGAA
* * * ** * * *
5930695 CCTGACTGACGACATTGGGGTTGAGGCGATCAGGGGGGCTGGGGGG-GTGTGCACACATGATGTG
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTG--CACATGATGTG
* * * * *
5930759 CGATGGGGGCTGGTACTTGGCCCCTATATTGGCTCCCTATCCCCCATCAAACATCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *** * *
5930824 ACCACCTTAAAGAGCATTTGAGATTTTACAGTTTTGCCATCGGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5930889 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
5930954 TACATGCC-AACAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * ** * *
5931018 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAAACGAGTCGTCT
5931083 T
517 T
5931084 CCCAGTCTTA
Statistics
Matches: 5839, Mismatches: 721, Indels: 505
0.83 0.10 0.07
Matches are distributed among these distances:
863 4 0.00
864 124 0.02
865 208 0.04
867 1 0.00
870 1 0.00
874 1 0.00
875 6 0.00
877 1 0.00
879 41 0.01
880 1095 0.19
881 141 0.02
882 2 0.00
883 1 0.00
884 12 0.00
885 1 0.00
886 44 0.01
887 164 0.03
888 110 0.02
889 106 0.02
890 79 0.01
891 118 0.02
892 127 0.02
893 661 0.11
894 16 0.00
895 75 0.01
896 40 0.01
897 508 0.09
898 136 0.02
899 10 0.00
900 52 0.01
901 76 0.01
902 31 0.01
903 33 0.01
904 48 0.01
905 14 0.00
906 19 0.00
907 4 0.00
909 6 0.00
910 2 0.00
911 2 0.00
912 15 0.00
913 26 0.00
914 78 0.01
915 97 0.02
916 117 0.02
917 85 0.01
918 147 0.03
919 30 0.01
920 84 0.01
921 53 0.01
922 7 0.00
923 15 0.00
924 49 0.01
925 32 0.01
926 73 0.01
927 6 0.00
928 6 0.00
929 29 0.00
930 1 0.00
931 6 0.00
932 240 0.04
933 1 0.00
935 5 0.00
936 1 0.00
937 1 0.00
938 46 0.01
939 469 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACTGGGGCACCATCCTGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATGCGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5927009 original size:26 final size:27
Alignment explanation
Indices: 5926973--5927024 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
5926963 TGACTTAGGT
* *
5926973 ATACGGAGTTCA-TTCCCAGTCTAAGC
1 ATACAGAGTTCATTTCCCAATCTAAGC
5926999 ATACAGAGTTCATTTCCCAATCTAAG
1 ATACAGAGTTCATTTCCCAATCTAAG
5927025 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
ATACAGAGTTCATTTCCCAATCTAAGC
Found at i:5927900 original size:26 final size:26
Alignment explanation
Indices: 5927864--5927916 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5927854 GTTGACATAG
5927864 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5927890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5927916 G
1 G
5927917 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5928781 original size:26 final size:26
Alignment explanation
Indices: 5928745--5928796 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5928735 TTGACTTAGT
*
5928745 CATACGAAGTTCATTGCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
5928771 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
5928797 ATTGGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:5929812 original size:11 final size:11
Alignment explanation
Indices: 5929796--5929820 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5929786 ACCAGGGCAC
5929796 CATCGTCGGAG
1 CATCGTCGGAG
5929807 CATCGTCGGAG
1 CATCGTCGGAG
5929818 CAT
1 CAT
5929821 TGCTAGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:5931290 original size:26 final size:26
Alignment explanation
Indices: 5931254--5931332 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5931244 GTTGACTTAG
*
5931254 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
5931280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5931306 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5931332 G
1 G
5931333 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5932680 original size:26 final size:26
Alignment explanation
Indices: 5932644--5932722 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5932634 GTTGACTTAG
*
5932644 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
5932670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5932696 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5932722 G
1 G
5932723 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5933308 original size:175 final size:176
Alignment explanation
Indices: 5932997--5933322 Score: 566
Period size: 175 Copynumber: 1.9 Consensus size: 176
5932987 ACGAGTCGTC
*
5932997 TTGCCATGAAACTTCACGTGAAGGCTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACATCACGTGAAGGCTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5933062 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTG
66 CATTGGAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
*
5933127 CGCATCCCGTCTCTTTGGCCGGAGTAGTGCCCGCTTGTTTCATCAT
131 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCTTGTTTCATCAT
5933173 TTGCCA-GAAACATCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 TTGCCATGAAACATCACGTGAAGGC-TAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
5933236 GCATTGGAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
65 GCATTGGAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
5933301 ACGCATCCCGTCTCTCTGGCCG
130 ACGCATCCCGTCTCTCTGGCCG
5933323 ACGTAGCGCC
Statistics
Matches: 142, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
175 133 0.94
176 9 0.06
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (176 bp):
TTGCCATGAAACATCACGTGAAGGCTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCTTGTTTCATCAT
Found at i:5933562 original size:26 final size:26
Alignment explanation
Indices: 5933532--5933610 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
5933522 GTTGACTTAG
*
5933532 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5933558 GCATACGGAGTTCATTCTCTA-TCTAA
1 GCATACGGAGTTCATTC-CTAGTCTAA
* *
5933584 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5933610 G
1 G
5933611 ATCTGCCCGG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 2 0.04
26 43 0.90
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5934272 original size:26 final size:26
Alignment explanation
Indices: 5934236--5934288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5934226 GTTGACTTAG
*
5934236 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
*
5934262 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
5934288 G
1 G
5934289 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:5935145 original size:26 final size:26
Alignment explanation
Indices: 5935116--5935168 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5935106 GTTGACTTAG
* *
5935116 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5935142 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5935168 G
1 G
5935169 ATCGGGCCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5936051 original size:26 final size:26
Alignment explanation
Indices: 5936021--5936073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5936011 GTTGACTTAG
*
5936021 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5936047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5936073 G
1 G
5936074 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5936955 original size:26 final size:26
Alignment explanation
Indices: 5936925--5937003 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
5936915 GTTGACTTAG
5936925 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
5936951 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
* *
5936977 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
5937003 G
1 G
5937004 ATCGGACCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.06
26 40 0.85
27 4 0.09
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:5937348 original size:929 final size:923
Alignment explanation
Indices: 5935116--5938785 Score: 4397
Period size: 929 Copynumber: 4.0 Consensus size: 923
5935106 GTTGACTTAG
* * * * *
5935116 GCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCGGGCCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCGGAC
* * * * * *
5935181 TGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTTACCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * * * * *
5935246 CACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCGTTAGGGTTCC-AGCGATCGGGGAG
131 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG
* * * * *
5935310 G-CAGGGGGTGTGCTCAAATGAAGTGCGATGGGTGCT--T-CAT-----TTATATTGGCCCCCTA
195 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
5935366 TCCCTCATCAAACCTTGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTC
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-C
* *
5935431 -CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACA
324 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * **
5935495 CTTCGAGTTTTTAGCAGAATCTTTTTGTGCAAGCCAACAAAAATACAAGGATCGCGTCTAATAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* **
5935560 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTTGAAAA
454 TTTGGGGCCAAAACT-CTTTCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAA
* *
5935624 TCATGACAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCGTT
517 TCATGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
5935689 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
*
5935754 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGC
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
** *
5935819 CCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGCGCGTCCAAGT
711 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG----TT--CA-T-T---C--CC-AGT
* * * *
5935884 CTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAAGATCGGCAGCATGCAGAGGGGGACTCGATC
762 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATC
* * * * *
5935949 GATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTT
827 GATCCC-GGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* *
5936014 GACTTAGGCATACGGAGTTCATTCCCAGTGTAA
891 GACTTAGGCATACAGAGTTCATTCCCAGTCTAA
5936047 GCATACGGAGTTCATTCCCAG--T---C-T---AAG---------A-T-T---A---GACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCGGAC
* * *
5936086 CAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCATATTTTTCTTCA-CTGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATC-GGG
* * *
5936150 ACACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
130 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
5936215 GTCGGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCT
195 G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
5936280 ATCCCTCATCAAACCTCGAGAACTTACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCC
* *
5936345 GCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCA
324 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
5936410 CTACGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
5936475 TTTGGGGCCAAAACTTCTTTCTAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTGTCAAAAAT
454 TTTGGGGCCAAAAC-TCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * *
5936540 CATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGGTCCATTG
518 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTG
* * * *
5936605 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATATAAAGATGTGCCTAAACCCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
5936670 C-ACCACGCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGCAATGCCCGCCCGCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C
* * * * * * *
5936734 TACCTGCCCGTTTGTTTCGTCGGTTGGCATAGCCATACGGAGTTCATTCCCATTCTAAGATGGGA
711 --CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * *
5936799 CCAGACCGAGGGTTGCAGTAGCAAGATCGGCAACACCCAGTGGGGGACCCCATTGATCCACGGCT
773 CCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-CGGCT
* * *
5936864 TGCGCGTCCCACCCCTCTAGCCAGCTGAGCGCCCGCCCGCTCGTTTCATGGGTTGACTTAGGCAT
837 TGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
5936929 ACAGAGTTCATTCCTAGTCTAA
902 ACAGAGTTCATTCCCAGTCTAA
5936951 GCATACGGAGTTCATTCCCTA-TCTAAGCATAC-AGAGTTAATTCCCAGTCTAAGATCGGACCGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGCATACGA-AGTTAATTCCCAGTCTAAGATCGGACCGG
* * *
5937014 ACCGAGGGTTGCGGTAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
64 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGG
* **
5937079 GGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
129 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* *
5937144 GGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCT
194 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
5937209 ATCCCTCATCAAACCTCGAGAACTCACACTCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCC
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCC
* * *
5937274 GCCAACAGCCTTTAAAGTGACTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
5937339 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
5937404 TTTGGGGCCAAAACTCTTTTCGAAATAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
454 TTTGGGGCCAAAACTC-TTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
5937469 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
5937534 ATGAATTTACAAGCCATAAAAATGGCATTGGCCCATAGAAATATGAAGATATGCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *** * *
5937599 TACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGATAGGCGTAGTGCCCACCCGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * ** * * *
5937664 GCCCGCTCGTTTCATCGGTTGCCTTAGGCATACAGAGTTCATTCCTGGTCTAAGATC-AAGCTGA
713 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGG
* * * * *
5937728 ATCGAAGGTTGCGGTAGC-AGATCGGTAGCACGCAGAGGGGGACCCGGA-CGATCCTCGGCTTGT
777 ACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCC-GATCGATCC-CGGCTTGC
* * * * * *
5937791 GCATCCTACCTCTCTAGCCGGCTGAACTCCCGCACGCTCATTTCATAGGTTGA-TT-----T--A
840 GCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
5937848 G-G-----T---A---T--
905 GAGTTCATTCCCAGTCTAA
* * * *
5937853 --AT--GGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCGGAC
* *
5937914 CGAGGGTTGTGGCAACACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* * * * *
5937978 G---CAT--------CATCATCGGAGAACCTGACCGGCGGCATT---G-TCAGGCGAT-AGGGGG
130 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * ** * *
5938027 TCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTA
195 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
5938092 TCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCG
* *
5938157 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACAC
325 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
5938222 ATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** * *
5938287 TTGACGG-CAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCAAAACCGCAAAACGTTTCTAAAA
455 TTG-GGGCCAAAACTCTTTC-GAAAAAATTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAA
* * * *
5938351 TCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTGAAGGGACCATTG
517 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
5938416 TATGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGACATATGAAGATGTGCCTAAACCCAG
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
5938481 CTACCACCCTATCGATCCACGGCTT-CTGCATCCTGTGTCTCTGGCTGACGTAGTGCTCGCCCAC
647 CTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* *
5938545 CCGCCCGCTTGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
711 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
** * ** * * * *
5938610 GACTAAGGGTTGTGGCAGCCGGATCGCCAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGC
776 GACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGGCTTGC
* * * * * *
5938675 ACATCCCACCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
840 GCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
*
5938740 GAGTTGATTCCCAGTCTAA
905 GAGTTCATTCCCAGTCTAA
* *
5938759 CCATACAGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
5938786 ATCAGATCGG
Statistics
Matches: 2351, Mismatches: 298, Indels: 201
0.82 0.10 0.07
Matches are distributed among these distances:
881 3 0.00
882 269 0.11
883 268 0.11
884 77 0.03
885 4 0.00
887 27 0.01
890 1 0.00
892 1 0.00
893 1 0.00
895 3 0.00
897 2 0.00
898 110 0.05
899 1 0.00
900 2 0.00
901 1 0.00
904 161 0.07
905 120 0.05
906 1 0.00
907 30 0.01
908 3 0.00
909 2 0.00
910 24 0.01
911 2 0.00
912 4 0.00
913 3 0.00
914 103 0.04
915 322 0.14
916 4 0.00
917 2 0.00
918 34 0.01
922 4 0.00
923 3 0.00
924 81 0.03
925 64 0.03
926 3 0.00
927 1 0.00
928 72 0.03
929 393 0.17
930 124 0.05
931 21 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (923 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGC
CAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGGCTTGCGCATCC
CACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAA
Found at i:5938770 original size:26 final size:26
Alignment explanation
Indices: 5938734--5938784 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5938724 TTGACTTAGG
* *
5938734 CATACGGAGTTGATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
5938760 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
5938785 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:5939474 original size:26 final size:26
Alignment explanation
Indices: 5939445--5939497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5939435 GTTGACTTCG
*
5939445 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5939471 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5939497 G
1 G
5939498 ATGGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5939646 original size:720 final size:711
Alignment explanation
Indices: 5938243--5939652 Score: 1942
Period size: 720 Copynumber: 2.0 Consensus size: 711
5938233 AGCTGAATTT
* ** *
5938243 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGACGGCAAAACTCCTTCTG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGACGGCAAAACTCCTTCCG
* *
5938308 AAAAAATTTTAAAAAATCTCAAAACCGCAAAACGTTTCTAAAATCGTGAAAAATAGAAAACGAGT
66 AAAAAATTTTAAAAAATCTCAAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
5938373 TGTCTTGCCATGAAACTTCACATGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACATGAAGGCTGAAGAGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
5938438 GTGGCATTGGCACGTAGACATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGG
196 ATGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5938503 CTTCTGCATCCTGTGTCTCTGGCTGACGTAGTGCTCGCCCACCCGCCCGCTTGTTTCATTGGTTG
261 CTTCTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTTGTTTCATCGGTTG
* * *
5938568 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGCAGCCGGA
326 GCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCAAGGGTTGT-------GGA
* * *
5938633 TCGCCAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCCACCCCTCTGGCTGGCT
384 T---CAGCACGTAGAGGGGGACCCAGTCGATCCCCGACTTACACATCCCACCCCTCTAGCTGGCT
5938698 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAACCAT
446 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAACCAT
* *
5938763 ACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCAGCAGCACATACTGGTCTAG
511 ACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCACATACTGGGCTAG
* * * *
5938828 GGCATGTGCTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGCCGGAGCATTGTCGAAGAACCT
576 AGCATGTGCTGGTGCCGCATTTTTATTCGTCAGGGCACCATCACCGGAGCATCGTCGAAGAACCT
*
5938893 GACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGGGCATGGGGGGGTGTGCAAAATCTTGTACAC
641 GACCAGCGGCATTGGGGTTCCGGCGACCGGGGGGGGCATGGGGGGGTGTGCAAAATCTTGTACAC
5938958 TTCGAG
706 TTCGAG
* * *
5938964 TTTTGTGCATGCCAATAAAAATACAAGGATCACATCCACCAAGTTTG-GGGCCAAAACTTCTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGACGG-CAAAACTCCTTCC
** * *
5939028 GAAAAAATTTTAAAAAATCT-TGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
65 GAAAAAATTTTAAAAAATCTCAAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
5939092 TCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAA
130 TCGTCTTGCCATGAAACTTCACATGAAGGCTGAAGAGACCATTGTATGAATTTACAAGCCATAAA
*
5939157 AATGCCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
195 AATGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
5939222 GCTTGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCTCCCGCCCG-TTCGTTTTA
260 GCTT-CTGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCACCCGCCCGCTT-GTTTCA
*
5939285 TCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAGCGGACCAAGGGTTGT-GA
319 TCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCAAGGGTTGTGGA
* * * * ** * *
5939349 T-TGCACGTAGAGGGGGACCCAGTTGATCCCCGGCTTACGCATCGTACCCTTCTAGTTGGCTGAG
384 TCAGCACGTAGAGGGGGACCCAGTCGATCCCCGACTTACACATCCCACCCCTCTAGCTGGCTGAG
* * * *
5939413 CGCCTGCATGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTGATTCCCAGTCTAAGCATACG
449 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAACCATACA
* ** * *
5939478 GAGTTCATTCCCAGTGTAAGATGGGA-CTGGATCGAGGGTTGC-GACAGCACATGCTGGGCTTGA
514 GAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCAG-CAGCACATACTGGGCTAGA
* * *
5939541 G-ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCTGAGCATCGTCGGAGAACCTG
577 GCATGTGCTGGTGCCGCATTTTTATTCGTCAGGGCACCATCACCGGAGCATCGTCGAAGAACCTG
* * * * *
5939605 ACCGGCGGCATTGGGGTTCCGGTGATC-GAGGGGGC-CGGGGGGGTGTGC
642 ACCAGCGGCATTGGGGTTCCGGCGACCGGGGGGGGCATGGGGGGGTGTGC
5939653 GCACATGATG
Statistics
Matches: 612, Mismatches: 68, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
709 12 0.02
710 7 0.01
711 84 0.14
712 165 0.27
716 3 0.00
720 188 0.31
721 75 0.12
723 2 0.00
724 76 0.12
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (711 bp):
TTTTGTGCATGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGACGGCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCTCAAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTGAAGAGACCATTGTATGAATTTACAAGCCATAAAA
ATGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTCTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTTGTTTCATCGGTTG
GCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCAAGGGTTGTGGATCAGCAC
GTAGAGGGGGACCCAGTCGATCCCCGACTTACACATCCCACCCCTCTAGCTGGCTGAGCGCCTGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAACCATACAGAGTTCA
TTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCACATACTGGGCTAGAGCATGTGCT
GGTGCCGCATTTTTATTCGTCAGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACCAGCGGC
ATTGGGGTTCCGGCGACCGGGGGGGGCATGGGGGGGTGTGCAAAATCTTGTACACTTCGAG
Found at i:5940361 original size:25 final size:25
Alignment explanation
Indices: 5940333--5940383 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
5940323 GTTGACTGAG
5940333 GCATACAAAGTTCATTCCCAG-CTAA
1 GCATACAAAGTTCATT-CCAGTCTAA
**
5940358 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAAAGTTCATTCCAGTCTAA
5940383 G
1 G
5940384 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (25 bp):
GCATACAAAGTTCATTCCAGTCTAA
Found at i:5942132 original size:26 final size:26
Alignment explanation
Indices: 5942102--5942151 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5942092 TGACTTAGGT
5942102 ATACGGAGTTCATTCCCAGTCTAATC
1 ATACGGAGTTCATTCCCAGTCTAATC
5942128 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
5942152 GATTGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAATC
Found at i:5942900 original size:870 final size:879
Alignment explanation
Indices: 5938964--5976782 Score: 17466
Period size: 869 Copynumber: 41.9 Consensus size: 879
5938954 ACACTTCGAG
* * * * *
5938964 TTTTGTGCATGCCAATAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTTCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** *
5939029 AAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5939094 GTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5939159 TGCCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * **
5939224 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCTCCCGCCCGTTCGTTTTATCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * ***
5939289 TTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAGCGGACCAAGGGTTGTGATTGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * ** * * ** *** * *
5939354 CG-TAGAGGGGGACCCAG-TTGATCCCCGGCTTACGCATCGTACCCTTCTAGTTGGCTGAGCGCC
391 GGATCG-GCAGCACGCAGAGGGGGACCCGAC--GCGCATC---CCC--C-----GGCTGAGCGCC
* * * *
5939417 TGCATGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGT
443 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
5939482 TCATTCCCAGTGTAAGATGGGACTGGATCGAGGGTTGCGACAGCACATGCTGGGCT-TGAG-ATG
508 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCATG
* * * *
5939545 TGCTGGTGCCGCATTTTTCTTC-GTCAGGGCACCATCACCTGAGCATCGTCGGAGAACCTGACCG
572 TGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
* *
5939609 GCGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
636 GCGGCATTGGGGTTCTGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
5939674 CTGGTA-------C-----TTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTA
699 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTA
*
5939727 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACA-T
764 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
5939791 TTTTTCAAATGGTCACAAAATCTTGTTCACCTCGAGATTTTT-GCTGAATGT
829 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTT
* *
5939842 TTTTGTGCATGACAAAAAAAATGA-AAGGATC-CTGTCTACCAAGTTTGGGGCCAAAACTCCTTT
1 TTTTGTGCATGCCAACAAAAAT-ACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * * **
5939905 CCAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAG
64 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * * *
5939970 TTGTCTTGCCTTGAAACTTCATGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAA
129 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
5940035 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
194 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
5940100 GCTTGCGCATCCCGTCTCTCTAGCCAGC---GT--CCGCCCGCCCGTCGGCCCGCTCATTTCATC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* ** * **
5940160 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAAACCGGATTGAGGGTTGCGGCAG
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* * *
5940225 CAGGATCAGCAGCACGTAGAGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
389 CAGGATCGGCAGCACGCAGAGGGG--------GA--CCCGAC--GCGCAT----CCCC-C--G--
* * * **
5940290 GACTGAGCGCCCGCTCGCATGCTCGTTTCGTTGGTTGACTGAGGCATACAAAGTTCATTCCCAG-
433 G-CTGAGCG--C-C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* **
5940354 CTAAGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCCACAGCACATGC
493 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
5940418 TGGGCT-TGATCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATCGT
558 TGGGCTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGT
* ** * *
5940481 CGGAGAACCTGACCGACGGCATTGAAGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCACACATGA
621 CGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA
*
5940545 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAC
686 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
5940610 TCAC-ACCCCTTTAAAGTGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
751 TCACAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
5940674 GAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTAAATTT
815 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5940739 TTTTGTGCATG-CAAAACAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTC
1 TTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * *
5940802 CAAAAAATTTTAAAAAATCCAGAACTGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGACT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
5940867 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
5940932 ATTGCATTGAAACAT--AGAAATATAAAGATGTGCCTAAA-CAACCTACCACCCTATCGATCTAC
195 ATGGCATTG--GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
5940994 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTACCCGCCCGCCCGCCCTCCCGCT
258 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG----CCCGCCCGCCCGCCCGCCCGCT
** * * * * * *
5941059 CGTTTCGTCAATTAGCTTAGGCATACGAAGTTCAATCCCAGTGTAAGATCAGACCAGACCGAAGG
315 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
5941124 TTGCGGCAACAGGATCGGCAACACGCAGTGGGGGACCCGATCGATCTCGGGCTTGCACATCCCGC
380 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CC---CGA---C--GC--G--CAT-----
* * * * *
5941189 CCCTCTGGCTGGCTGAGCGCTCACACGCTTGTTTCATGGGTTGACTTAGGAATACGGAGTTCATT
427 CCC-C---C-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * **
5941254 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGC
487 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* ** * * *
5941319 CCATATTGGGCT-CGACCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA-C--CAT-----C
552 ACATGCTGGGCTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGC
* * *
5941375 A-C--CGGAGAACCTGACCGGCGACATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGTGTGTG
616 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATC-GGGGGGCCGGGGGGTGTGCG
* *
5941436 CACATGATGCGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCT
679 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
5941501 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAA
744 CGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * ** * *
5941566 GTGTATGAAATGGAGACTTTTTTTTCAAATGTTCACAAAAACTTGTACACTTCGAGTTTTTAGCT
809 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
5941631 GAATTT
874 GAATTT
* * *
5941637 TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
*
5941702 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5941767 GTCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * *
5941831 ATGGCATTGACACACAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** *
5941896 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT----GCCCGCCCGCTTGCCCGCTCGTTTCGTCT
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * **
5941957 GTTGGCTCAGGCATACGGAGTTCATTCCCCA-TCTAAGATCGGTCCAGAGCAAGGGTTATGGCAG
325 GTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* *
5942021 TAGGATCGGCAGCACACAGAGGGGGACCCGAC-CG-AT-CCCCGGCTGAGCGCCCGCACGCTCGT
389 CAGGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGCTGAGCGCCCGCACGCTCGT
* * *
5942083 TTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGT
454 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * **
5942148 CTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGGC-CCGGCATTTGCTGGTGTTG-
519 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGC
* *
5942211 AGTTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGA
584 A-TTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
5942276 TTCTAGCGATCGGGGGGGTCGAGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
648 TTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
5942340 CTTATATTCG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAG
712 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAG
*
5942404 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGT
777 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
5942469 CA-AAAAACTTGTACAGTTCGAG-TTTTAGCTGAATTT
842 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* **
5942505 TTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCAGGCCAAAACTCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
5942570 AAAAAA-TTTAAAAAATCTCAAACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5942634 GTCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
5942698 ATGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATTGATTCACGA
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
5942763 CTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGCCCGCCCGTTCGTTTCGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * *
5942827 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGACAAC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
5942892 AAGATCGGCAACACGCAGAGGGGGACCCG--GTCG-AT-GCCCGGCTTA-CGCATCC-CAC-C-C
390 AGGATCGGCAGCACGCAGAGGGGGACCCGACG-CGCATCCCCCGGCTGAGCGC--CCGCACGCTC
** * * ** ** ***** * * *
5942949 --TTC-T-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCA
452 GTTTCGTGGGTTGACTTAG-G--CATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCA
* * * * *
5943010 TTCCCAATCTAAGATTGGATCGGACCGAGGGTTG-GGCAGCACATGCTGGTCTCGGGCATGTGCT
511 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCT
* * * * * * ** * *
5943074 GGGGCCGCATTTCTCTTCGCCGGGGCACCATC-GCTGGATCATCACCGGAGAACCTGACCGACGA
576 GGTGCCGCATTTTTCTTCACTGGGGCACCATCATC-GGAGCATCGTCGGAGAACCTGACCGGCGG
* * * * * *
5943138 CATTGAGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCACACACGATGTGCGATGGGTGCTGGT
640 CATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
5943203 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACCCACACCCCCTGAAAGAG
704 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAG
* *
5943268 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTT
769 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5943333 CAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTAAATTG
834 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * ** *
5943379 TTTTATGCAAGCCAATAAAAATACAAGGATCACGTCAACCATGTTTGAAGCCAAAAATCC-TTCT
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * **
5943443 GAAAAAATTTAAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
**
5943508 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGGCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
5943573 ATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5943638 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGCGCCCGCCCGCCCGCCCGTCCGCTCATTTTGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * * *
5943703 GTTGGCTTAGGCATATGAATTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAAC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * *
5943768 AGGATCAGCAACACACAGAGGGGGACCCGGCCGATCCCTGGCTTGGGCATCCTGCCCCTCTGGCC
390 AGGATCGGCAGCACGCAGAGGGGGA--C--CCGA---C--GC----GCA---T-CCCC-C--G--
* * * *
5943833 GACTGAGTGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
433 G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * **
5943898 GCATTTGAAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTTCAACAGCACATGCTGGG
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5943963 GT-CGAGCATGTGCTGGTGCCGCATTTTTCTT--C----G---C--CA---GAGTAACGTCTGAG
562 CTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAG
* * * * * *
5944013 AACCTGACCGACAGCATTAGGGTTCTGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTA
626 AACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
5944078 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCAC
690 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5944143 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
5944208 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
820 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
5944268 TTTTGTGCATGCCAAAAAAAATACAATGATCACGTCCACCAAGGTTGGGGCCAAAAATCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** ** * * ** *
5944333 AAAAAAGGTTAAAAAATCCTAAACCGTAAAAAGCTTT-GAAAATTGCAAAAAATAGAAAACGGGT
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
5944397 CGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTAAAAGCTATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
5944462 ATGGCATTGGCACT-CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTACCAATCCACG
195 ATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
5944526 GCTTACACATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGTCCGCTCATTTTGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * * * *
5944591 GGATGGATTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGACCTAAGGTTGCGGTAG
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
*
5944656 CAGGATTGGCAGCACGCAGAGGGGGAGCCGATCGATCCCCGGCTTGCGCATCCTGCCCTCTGGCC
389 CAGGATCGGCAGCACGCAGAGGGGGA-CC---CGA-------C--GCGCA---T--CC-C---CC
* * * *
5944721 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGTCATACGGAGTTCATTCCCAGTCTAA
432 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5944786 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACAGAGGGTTGCGGCAGCACATGCT--G
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5944849 --CC-GTAT-T--T--T------TCTTT-GT--C-GGGG------CA-C---G-ATCGTCAGAGA
562 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * * *
5944885 ACCTGATCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTCCGCACATGATGTGC
627 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
5944950 CATGGAG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
691 GATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5945014 ACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAGTA-CCATTAAAGTGTCTGAAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5945078 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTC-ATGTTTTTAGCTGAATTTT
820 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAA-TTT
* * *
5945139 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT-C-TGCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
5945202 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5945267 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
5945331 TTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCCTATCGATCCACG
196 -TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG
* * *
5945396 GCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT----GCCCACCCGCCCGCCCGCTCGTTTCATC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* ** **
5945457 GGTTGGCTTAAGG-ATACGGAGTTAATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAACA
324 GGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * *
5945521 GCAGGATTGACAGCACGCAGAGGGGGACCCG--GC-CAAT-CCCCAGCTTGTGCATCCCGC-C-C
388 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACGCGC-ATCCCCCGGC-TGAGC-GCCCGCACGC
** * * * * * ** * *
5945580 -C---TC-T-GGCCGACTGAGCGC--CCGCACGCTCGTCTCATGAGTTGACTTAGGTATACGGAG
450 TCGTTTCGTGGGTTGACTTAG-GCATACGGA-GTTCAT-TC-CCAG-T--C-TAAGCATACGGAG
* * * * *
5945637 TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCATATGCTGGGCT-CGAGCAC
507 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCAT
* *
5945701 GTGCTGGTGTCGTATTTTTCATTGC-C-GGGG------CAT-----CATCGTCGGAGAACCTGAC
571 GTGCTGGTGCCGCATTTTTC-TT-CACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
* * * * * * * *
5945753 CGACGGTATTGGGGTT-TCGACGATCAAGGGGGCTGGGGGGTGTGTGCACAGGATGTGCGATAGG
634 CGGCGGCATTGGGGTTCT-GGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
5945817 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC-ACCCTC
697 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC-C
* *
5945881 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
761 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
5945946 ACTTTTTTCAAATGGTCACAAAATCTTGTACA-----A----TT--C-G-A--G
826 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** *
5945985 TTTT-T--A-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
5946046 AAAAAATTTTAAGAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5946111 GTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5946176 TGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5946241 TTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCCCACTCGTTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ***
5946302 TTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGG-CCAGACTGAGGGTTGCAATAGC
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGGGTTGCGGCAGC
* * **
5946366 AGGATCGGCAGCACGTAGAGGTGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG-GT
390 AGGATCGGCAGCACGCAGA-G-GG-----G--GA--CCCGAC--GCGCAT-CC-CCCGGCTGAG-
* *
5946430 CGCCTGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
439 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * *
5946495 GAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGTACATGCTGGGCT-CGAG
504 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-G
* * ** * * * ** **
5946559 CATGTGCTGGGGCCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCACCGGAGAATTTGA
568 CATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
** * * * *
5946624 CCGGCGGCATTATGGTT-TCGACGATCTGGGGGGTCGGGGTGGGTGTGCGCACTTGACGTGCGAT
633 CCGGCGGCATTGGGGTTCT-GGCGATC-GGGGGG-CCGGG-GGGTGTGCGCACATGATGTGCGAT
5946688 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACC
694 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACC
* *
5946752 CCTTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
759 CC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5946817 GACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTT
823 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5946874 TTTTGTGCATGCTAACAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGGCCAAAAATCCTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTTC
* ** * *
5946938 G-AAAAATTTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATGGAAAACGAG
65 GAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* ** **
5947002 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAATGATTGTACAAATTTACAAGCCATAAA
129 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
5947067 AATGGCATTGGCAGGCAGAAATATGAAAATGTGCCT-AACCCACCTACCACCCTATCGATCCACG
194 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *** * * *
5947131 GCTTGCGCATCTCGTCTCTCTAGTCGACGTAGTGCCTATCTGCCCGTCCGCCCGCTCATTTCGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
5947196 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGATCAAGGGTTGCTGCAG
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* * *
5947261 CAGGATCGGTAGCACGCAGAGGGGGACCTG--GCTG-AT-CCCCGGCT-TGCGCTTCC-CAC-C-
389 CAGGATCGGCAGCACGCAGAGGGGGACCCGACGC-GCATCCCCCGGCTGAGCGC--CCGCACGCT
* ** * * ** * * * *** *
5947318 C-CTT--T-GGCCGAATGA-GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
451 CGTTTCGTGGGTTGACTTAGGCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTT
** * * *
5947378 TGTTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTG
509 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTG
* *
5947443 CTGGTGCCGTATTTTTCTTCA-TCGGGGCA-C--CATC---G---C--CGGAGAACCTGACCGAC
574 CTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGC
* * * *
5947496 GGCATTAGGGTT-TCGGTGATCGGGCAGGCCAGGGGGGGTGTGTGCGCACATGAGGTGCGATGGG
638 GGCATTGGGGTTCT-GGCGATCGGG-GGGCC---GGGGG-GTGTGCGCACATGATGTGCGATGGG
* *
5947560 TGCTGGTACTTGG-CCTTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA-GACTCC
697 TGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAAC-CC
*
5947623 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
760 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
5947688 CACTTTTTTCAAATGTTCA-AAGAATCCTGTGA-AGTTTGAGTTTTTAGCTGAAATT
825 CACTTTTTTCAAATGGTCACAA-AATCTTGT-ACACTTCGAGTTTTTAGCTGAATTT
* * *
5947743 TTTTATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
1 TTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * ** *
5947807 AAAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * * *
5947872 CGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGTCATAAGA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
5947937 ATGGCATTGGCATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
195 ATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
5948001 GCTTGCGCATCCCATCTCTCTAGCCGACGTAGTGTCAGCCCGCCCGCCCGCCCGTCCGCTCGCTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCGCCCGCCCGCCCG--C-C-CGCTC
* * * * * * * * * * *
5948066 ATTTCATCAGTTGGGTTAGGCATATGGAGTTGACTCCCAATCTAAGATCGGATCGGACCGAGGGC
316 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * ** * * * * * **
5948131 CGCGACAGCACGCAGAGGGGGA-CCCGGCCGACCCTCGGCTTGTGCATCCCG-C-C-CCTCTGGC
381 TGCGGCAGCA-G--GATCGGCAGCAC-GCAGA-----GG---G-GGA-CCCGACGCGCATC-CCC
* * *
5948192 CGACTGAGCGCCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTA
431 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
5948257 AGCATACGGAGTTCATTCCAAGTCTAAGATTGGACCGAACTGAGCGTTGCGACAGCACATGCTTG
496 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * ** *
5948322 GCTTCGGCATGCGCTGGTGCTGCATTTTTCTT-TGTCGGGGCCCCATCGCCGGAGCATTGTCGGA
561 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGA
* * ** * * *
5948386 GAACCTGACCGGCAGCATTGGGGTTCCGAAGAT---GGGTCGGGGGGGTGTGCGCACATCATGTG
625 GAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
5948448 CGATGGGTGCTGGTACTTGGGCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTA-
690 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5948512 AACCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
5948577 GGGGACA-TTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
820 GGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
5948637 TTTTTTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * ** * ** ** * *
5948702 AAAAAATTTTAAAAAA-CCC-AAACTTGCACA-TCCCGACACCATTGTATGAATTTACA-AGCCA
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-A-AAAATCG--TGAA---AAATAG--A
* * * * * ** *** **
5948763 TAAA--AAT-GGCATTGGCATACAGAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCT
122 -AAACGAGTCGTC-TTGCCAT---GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * ** * * ** * ** * *
5948813 ACCA-CCCTATCAATCCGAGGC-TTGCGCATCCCG-TCTCCCTGGCCGGCGTGGTGCCT--GCCC
182 ACAAGCCATAAAAAT----GGCATTG-GCATGCAGAAAT--AT-G-AAG-AT-GTGCCTAAACCC
* * * ** * * * * *
5948873 ACTCGT-CCGCCCGT-TTGTTTCGTCGG-TTG-GCAT--AGGCAT-AC-GG--AG-GTCA-TTCC
236 AC-C-TACCACCC-TATCG-ATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGT-AGTGCC
** * * * * * * * * * * ***
5948926 CAGTCTAAGATCGGACCAGACCG-TGGGTT-GT-GGTAGTAGGATCA-ACAATAAGTAGAGGGGG
295 C-G-C-CCG-CCCG-CCCGCCCGCTCGTTTCGTCGGT--T-GGCTTAGGC-ATACG--GA-GTTC
* * * * ** * ** *
5948987 A--CCCGGTC---GATC--CCCA-A-C-----TTGC-ACATCCCGACCCTCTGGTCA-GCTA-A-
348 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC-AG-CACGC-AGAG
* ** * *** * **** ** * ***** * *
5949034 --TGACCCGCACGTTCATTTCGTGGGTTGA-CTTAGGCATACG-AAG-TTCATTCCCAGTC-TAA
410 GGGGACCCG-ACGCGCA-TCCCCCGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAG
* * *
5949093 GCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCGTTCACAGTCTAAGAGT-GGACCGGA
471 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGA
* * * * **
5949157 TCGAGGGTTGCGGTAGCACATGCTGGGCT-CGAGCATGTGCTGGTGTCACATTTTTCTT-TGTCG
535 CCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACT-G
* * * * * **
5949220 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGGCCGGCAGCATTGGGGATCCGGTAATC-GGG
598 GGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGG
* * *
5949284 GGCCGGGGGGTGTGCACACATGATGTGCGATGGGAGCCGGTACTTGGCCCTTATATTGGCCCCCT
663 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
5949349 ATCCCTCATCAAACCTTGCGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
728 ATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
5949413 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGTTCA-AAGAATCCTGTGA
793 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGT-A
* * *
5949477 -AGTTTGAGTTTTTAGCTGAAATT
856 CACTTCGAGTTTTTAGCTGAATTT
* * *
5949500 TTTTATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
1 TTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * ** *
5949564 AAAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * * *
5949629 CGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGTCATAAGA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
5949694 ATGGCATTGGCATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
195 ATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5949758 GCTTGCGCATCCCGTATCTCTGGCC-G-GTA-T---AG--TGCCCGCCCGCCCGCTCGTTTTGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * ***
5949815 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATTTAACC-GAACCGAGGGTTGCGGCA
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCA
* * ** * *
5949879 GTAGGATTGGCAGCACATAGAGGGGGACCC-ATC-CG-AT-CCCCGGCTTGCGCATCCCGC-C-C
388 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGCGCATCCCCCGGC-TGAGC-GCCCGCACGC
** * * * * *** * *
5949938 -C---TC-T-GGCCGGCTGAGCGC--CCGCACGTTCATTTCGTGGGTTGACTTAGGGATACGGAG
450 TCGTTTCGTGGGTTGACTTAG-GCATACGGA-GTTCA-TTC-CCAG-T--C-TAAGCATACGGAG
* * * * * *
5949995 TTCATTCCTAGTCTAAGATAGGATCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
507 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
* * * *
5950060 TTCTGGTGCCACATTTTTCTTCA-TCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCG
572 TGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
* ** **
5950124 GAGGCATTGGCATT-TCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGACAGGTGC
636 GCGGCATTGGGGTTCT-GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
5950188 TGGTACTTGGCCATTATTTTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC-ACCCCTTTA
700 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCC-TTA
* * * * * * *
5950252 AAAAGCAATTGACATTTTATAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGAACACT
764 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
5950317 CTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
829 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
5950368 TTTT-TGCATACCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
5950432 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTCTCAAAAATTGTGAAAAATAAAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5950497 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5950562 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACTGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
5950627 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTTGTCAG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * ** *
5950692 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCCACAGGA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * *
5950757 AGATCGACAGCACACAGAAGGGAGCCGATCGATCCTACACTTGCGCATCCCGCCCCTCTAGCCAG
391 GGATCGGCAGCACGCAG-AGGG-G--GA-C---CC--GAC--GCGCAT----CCCC-C--G---G
*
5950822 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
434 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *** * * *
5950887 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAAAAGCAGGATTGAT-AG
499 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CA-TGCTGGG
* * * * * ** * * *
5950951 CACGCAG-AGGGGGACCTGGTCGATCCCCGGC-TTGAGCATCTCGCCCCTCTGGTCGG-TCGAGT
562 CTC-CGGCA-TGTG--CTGGT-G----CC-GCATT-----T-T-TCTTCACTGG--GGCACCA-T
* * * * *** ** * ** * ** *
5951013 GCCT-GTACGC-TCGTTTC-GTG--CGTTGA-CTTAGGCAAACGGAGTTCATTCCCAGTCTAAGA
607 -CATCGGA-GCATCG--TCGGAGAAC-CTGACCGGCGGC-ATTGGGGTTC-TGGCGA-TC-GGGG
*** ** * * * * * * * * *
5951072 ATAC-GAAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGCAGCACTTGCTGGG
663 GGCCGGGGGGT-GTGCGCA--C-ATGAT-GTG--C-GA---TGGG-TGCTG--GTAC-T--TGGC
* * ** * * * ** * * *
5951135 CTTTGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGAACCATCGCCGGAGAACCTGACCAGC
711 CCTT---ATAT--T-G-GCC-CCCTATCCCTCATC---AAACC-T---C-GAGAA-CTCA-CAAC
* * *** * ** * **** ** * * * ****
5951200 GGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGC-GCACAGGATGTGCGATGGGTGCT
758 -CCCTTAAAG----AGC-ATTTGAGATTTTA-CAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T
* * ** * ** **** **
5951264 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
811 -GT-C-T-G-----AAATGGGGACACT-T---TTTTCAAA---TG-G---TCACAAAATCTTGTA
* * *
5951329 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
856 CA-C-TTCGAG--TTT-----TTAGCT----G-A---ATT----T
* ***** ** * ** * *** *
5951374 GTGTTAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGTAC-ACTTCGAGTTTTTAGCT
1 -T-TT---T-GTG-CA-TGCCAACAAA-AAT-ACAAGGATCACGT-CTAC--CAAGTTTGGGGCC
* ** ** * ** * * ** ** **
5951437 GAAGTTTTTTGTGCATGCCAACAAAA--ATACAAGGATCACGTCTACCACGTTTAGGGCTAAAAC
53 AAAACTCCTT-T-C--G--AA-AAAATTTTA-AAAAATC-C--CGAAC-CGTAAAAAG-T--TTC
5951500 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATTGTGAAAAATAGAA
103 -------------------AAAAA--TCG-----T-----G----AAAAA---T--A-----GAA
*
5951565 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
123 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
5951630 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
188 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
5951695 TCCACGGCTTGCGCATCCCGTATCTCTGGCC-G-GTA-T---AG--TGCCCGCCCGCCCGCTCGT
253 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGT
* * * ***
5951752 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATTTAACC-GAACCGAGGGTT
318 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTT
* * ** * *
5951816 GCGGCAGTAGGATTGGCAGCACATAGAGGGGGACCC-ATC-CG-AT-CCCCGGCTTGCGCATCCC
382 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGCGCATCCCCCGGC-TGAGC-GCCC
** * * * * *** * *
5951877 GC-C-C-C---TC-T-GGCCGGCTGAGCGC--CCGCACGTTCATTTCGTGGGTTGACTTAGGGAT
444 GCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGGA-GTTCA-TTC-CCAG-T--C-TAAGCAT
* * * * * *
5951932 ACGGAGTTCATTCCTAGTCTAAGATAGGATCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCG
501 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCC
* * * **
5951997 GGCATGTTCTGGTGCCACATTTTTCTTCA-TCGGGGCACCATCACCGGAGCATCACCGGAGAACC
566 GGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACC
* ** *
5952061 TGACCGGAGGCATTGGCATT-TCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAC
630 TGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
5952125 AGGTGCTGGTACTTGGCCATTATTTTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC-ACC
694 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACC
* * * * * *
5952189 CCTTTAAAAAGCAATTGACATTTTATAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGG
759 CC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5952254 AACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
823 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * * *
5952312 TTTTTTGCATACCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
5952377 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTCTCAAAAATTGTGAAAAATAAAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5952442 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5952507 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACTGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5952572 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTTGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * ** *
5952637 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCCACAGGA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * *
5952702 AGATCGACAGCACACAGAAGGGAGCCGATCGATCCTACACTTGCGCATCCCGCCCCTCTAGCCAG
391 GGATCGGCAGCACGCAG-AGGG-G--GA-C---CC--GAC--GCGCAT----CCCC-C--G---G
*
5952767 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
434 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *** * * *
5952832 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAAAAGCAGGATTGAT-AG
499 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CA-TGCTGGG
* * * * * ** * *
5952896 CACGCAG-AGGGGGACCTGGTCGATCCCCGGC-TTGAGCATCTCGCCCCTCTGGTCGGTCGAGC-
562 CTC-CGGCA-TGTG--CTGGT-G----CC-GCATT-----T-T-TCTTCACTGG--GG-C-ACCA
* * * * * *** ** * ** * ** *
5952958 GCCT-GTACGC-TCGTTTC-GTG--CGTTGA-CTTAGGCAAACGGAGTTCATTCCCAGTCTAAGA
606 TCATCGGA-GCATCG--TCGGAGAAC-CTGACCGGCGGC-ATTGGGGTTC-TGGCGA-TC-GGGG
*** ** * * * * * * * * *
5953017 ATAC-GAAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGCAGCACTTGCTGGG
663 GGCCGGGGGGT-GTGCGCA--C-ATGAT-GTG--C-GA---TGGG-TGCTG--GTAC-T--TGGC
* * ** * * * ** * * *
5953080 CTTTGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGAACCATCGCCGGAGAACCTGACCAGC
711 CCTT---ATAT--T-G-GCC-CCCTATCCCTCATC---AAACC-T---C-GAGAA-CTCA-CAAC
* * *** * ** * **** ** * * * **
5953145 GGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGC-GCACAGGATGTGCGA-T-GGGTG
758 -CCCTTAAAG----AGC-ATTTGAGATTTTA-CAGGTTTGCTGC-CA-G-T-AGCCATTAAAGTG
* * * * * ** ** * * ** **
5953207 -CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTTGAGAACTCACACCCC
812 TCT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTT--GTA--CACTTCGA
* ***
5953268 CTTAAAGAGCATTTGAGATTT
864 GTT-TTTAGC---TGA-ATTT
** ** * * ** *
5953289 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTTA-AATGGGGA-CACTTTTTTCAA--AT-GG
1 T-----TTTG-TG-CA-T-GCCAACAAA----AATACAA---GGATCACGTCTACCAAGTTTGGG
* * *
5953349 TCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATAGTTTGTGCATGCCAAAAAAAATACAA
50 GC-CAAAA-C---T-C-CTTTCGA------A----AA-A-ATT-T---T-----AAAAAAT-C-C
* * * * * *
5953413 GGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
85 CGAAC-CGT-AA-AAAGTTT-----CAAAAAT-CGT--G-AAAAA---TAGAAAA--C-G-A--G
* *
5953478 -CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAA
129 TC-----GTCTTG-----C------CAT-G-AAA--------C-T----T-------CACGTGAA
5953542 GGCTTCAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
156 GGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
5953606 AGATGCGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCA
220 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
5953671 ACGTAGTGCCCGCCCGCCTGGCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCAT
285 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * *
5953736 TCTCAGTCTAAGATCGGGTCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGAGGGA
350 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
*
5953801 CCCTCCCTATCCCCAGCTTGCACATCTCGCCCCTCTGGTGGGCTGAGCGCCCGCACGCTCGTTTC
415 ----CCCGA----C-GC--G--CA--T--CCCC-C-----GGCTGAGCGCCCGCACGCTCGTTTC
* * * * * *
5953866 GTGGGTTAACTTAGGCATACAGAGTTCATTCCCGGTCTGAGCAAACAGAGTTCATTCCCAGTCTA
457 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * * *
5953931 AGATTGAATCAGACCGAGGGTTGCGGTAGCAAATGCTTGGCTCGGGCATGTGCTAGAGCCGCATT
522 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATT
* * ** *
5953996 TTTCTTC-GTCGGGGCACCACCGCCAGAGCAT--TACTGGAGAACCTGACCGGCGGCATTGGGGT
587 TTTCTTCACT-GGGGCACCATCATCGGAGCATCGT-C-GGAGAACCTGACCGGCGGCATTGGGGT
* * *
5954058 TCTGGCGATCGGGGGGTCGGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTAGTTGGCC
649 TCTGGCGATCGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
5954123 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
712 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAG
* * *
5954188 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGA
777 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
5954253 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTT
842 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5954291 TTTTGTGCATGGCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCC-TTCT
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * ** * * *
5954355 GAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATATATAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
5954420 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAGTTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5954485 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5954550 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG-TCGCCCACTTGTTTTGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * *
5954614 ATTGGCTTAGGCATACGAAGTTGATTCCCAGTCTAAGATCGGACCAAACCAAAGGTTGCGGCAGT
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* ** * *
5954679 TGGATCGATAGCACG-TGAGGTGGACCCGACCGATCCTCAGCTTGCACATCCCGCCCCTCTGGCC
390 AGGATCGGCAGCACGCAGAGGGGGA--C--CCGA----C-GC--G--CAT------CC-C---CC
* * * *
5954743 GGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCTCAGTCTAA
432 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5954808 GCATATGTAGTTCATTCCCAGTCTAGGATCGGACCTGACCGAGGGTTGCGGCAGCACATGCTGGG
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5954873 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-GTCGGGG---CA-C--C--A-C-T-GTCGGAG
562 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAG
* * * * * *
5954926 AACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCAAATGATGTGT
626 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5954991 GATGGGTGCTGGTTCTTGGCCCTTATTTTGGCCTCCC-ATCCCTCATAAAACCTCGAGAACTCAC
691 GATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5955055 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5955120 GGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACAGTTCGA-TTTTCTAGCTGAA-AT
820 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTT
* * * * * * * *
5955179 TTTTG-GCATGGGCAAC------CCCAGGTTCACATCTACCAAGTTT-GGG-CAAGAGT-CTTCC
1 TTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
*** *** *
5955234 TTTAAAATGGGAAAAAAATCCCAAACC-TCGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAC
65 GAAAAAAT-TTTAAAAAATCCCGAACCGT--AAAAAGTTTCAAAAATCGTGAAAAATAG-AAAAC
* * *
5955298 G-GTCGTCTTGCCATGAAACTTCATCATGAAGGCTT-A-GGAACATTGTATGAATTTAGAAGCCA
126 GAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * * *
5955360 T-AAAATCCGTATT-GCATGCA-AGAATATGAAAATAATGCCAAAACCCACCTACCACCCTACCG
190 TAAAAAT-GGCATTGGCATGCAGA-AATATGAAGAT-GTGCCTAAACCCACCTACCACCCTATCG
* ** * * *
5955422 AT-CACGGCTTGTGCA-AACGTCTCTC-GGTC-G-TTAGT--------GCCC-CCCGCCCGTTCG
252 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCG
* * *
5955473 TTTCGTC-G-T---TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGTACC-G-CACTA--TT
317 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-CGAGGGT
* * * * * *
5955529 TGTGGTAGC-TG-TCGGCAAACACACAGAGGGTGGCCATCCCGGCTTGCGCATCCCGCCCCTCTG
381 TGCGGCAGCAGGATCGGC-AGCACGCAGAGGG-GG--A-CCCGAC--GCGCAT----CCCC-C-G
*
5955592 GCTG-GCTGATGACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
433 GCTGAGC----G-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
5955656 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGGAGCACATGC
493 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
5955721 TGGGCT-CGAGCATGTGCTGGTGCCACATTGTTCTTCACCGGGGCACCATC-GCAAGAGCATCGT
558 TGGGCTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATC-GGAGCATCGT
* * * * *
5955784 CAGAGAACCTGACCGACGGCATTGGGGTT-TCGACGATCGGGGGGGGCGGGGGGTGTGCGCAGAT
621 CGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATC-GGGGGGCCGGGGGGTGTGCGCACAT
* * *
5955848 GATATGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCTCCTATCCCTCATCAAACCTCGAGA
684 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
5955913 ACTCAC-ACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGCGT
749 ACTCACAACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
5955977 CTGAAATGGGGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
813 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
5956042 TT
878 TT
* * * *
5956044 TTTTGTGCATGCCAAGAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * *
5956109 AAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5956174 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGTCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5956239 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5956304 TTGCGCATCCCGTTTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* *** * * ** * * *
5956369 TTGGCTTAGGCATATGGAGTTCATTTTGAATCTAAGATTGGACTGGATCAAGGGTTGTGGCAGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
5956434 GGATCGGCAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
391 GGATCGGCAGCACGCAGAGGGGGACCC-G---A----C-GC----GCAT----CCCC-C-GG-C-
* * * *
5956499 GTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTACTCTAAG
435 --TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** *
5956564 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGGTCGAGGGTTGCGGCAGCACATGATGGGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * **
5956629 TCGGGCATGTGCTGGTGCCACATTTTTCTTC-GTCGGGGCACCATCATTGGAGCATCACCGGAGA
563 TCCGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGA
* * *
5956693 ACCTGACCAGG-GACATTGGGGTTCCGACGATC----GG--GGGGGGTGTGCGCACATGATGTGC
627 ACCTGACC-GGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * **
5956751 GATGGGTGCTGGTACTTGGCCCTTATATTCTCCCCTTATCCCTCATCAAACCTAAAGAACTCACA
691 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
5956816 CCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTGAAATG
756 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5956881 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
821 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5956940 TTTTGCGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGTGCCAAAAATCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * ** * *
5957005 AAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACAAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
5957070 GTCTTGCCATGAAACTTCACGT----G---AA-GG--C--T-TATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5957122 TTGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * **
5957187 TTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTTGTTTCGTTAG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
5957251 TTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGAACTGGACCAAGGGTTGCGGTAGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * *
5957316 AGATTGGCAGCTCGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGTCG
391 GGATCGGCAGCACGCAGAGGGGGA--C--CCGA-------C--GCGCAT----CCCC-C-GG-C-
* * *
5957381 GTTGAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAG
435 --TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
5957446 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTGTACCGAGGGTTGCGGTAGCACGTGCTAGGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** * * * * **
5957511 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGAGTACCTTCACCGGAGCATCACCGGAGAA
563 TCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAA
* * * * * *
5957576 CCTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATCATGTGC
628 CCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * * *
5957641 AATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTTAATCCCTTATCAAACCTCGAGAACTCAC
691 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCAC
* * *
5957706 ACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5957771 GAGGACACTTTTTTCAAATGGTCACAAGATCTTGTACACTTCGAGTTTTTAGCTGAATTT
820 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
5957831 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-C
* * * * * * * *
5957895 AAAAAAATTTT-AAAAATCCTGAACTGCAAAAAGTTTCCAAAATCATGAAAAATAAAAAATGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
5957959 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
5958024 ATGGCATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCGCGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
5958089 CTTGCGCATCCCGTCTCTGTGGCAGGCGTAGT----GCCCGCCTGCCCGCCCGCTTG-TTCGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
** * ** * * *
5958149 GTTGGCTTAGGCATACGGAGTTCATTATCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGTAGT
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* *
5958214 AGGATCGGTAGCACGCAAAGGGGGACCCGACCTTCCCCGACTTGTGCATCCTGCCCCTCTGGTCG
390 AGGATCGGCAGCACGCAGAGGGGGACCCGA-------CG-C----GCA---T-CCCC-C--G--G
** ** * ** * *
5958279 ACTGAGCAACCGCACGCTCGTTTTATGGGTCGACAAAGGCATACGGAGTTCATTCCCTGTCTAAC
434 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* **
5958344 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * *** * * ** *
5958409 TTAGGCATGTGCTGGTGCCGTATTTTTCTTTGTTGGGGCACCATAACCGGAGCATCACCGAAGAA
563 TCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAA
*
5958474 CCTGACCGGCGGCATTGGGGTT-TCGGTGATCGGGGGGACCGGGGCGGGTGTGCGCACATGATGT
628 CCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGG-CC-GGG-GGGTGTGCGCACATGATGT
* * * * *
5958538 GTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTCTCTCTCATCAAACCTTGAGAACTCA
689 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5958603 C-ACCCCATTGAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAA
754 CAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5958667 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTG
818 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5958729 TTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * ** *
5958794 AAAAAATTTTAAAAAATCTCGAATCACAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5958859 GTGTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
5958924 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * *
5958989 TTGCGCATCCCGTCTCTCTGGCCGACGTA----AAGCCTGCCCGCCCGCTCGCTCGTTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * ** **
5959050 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGAATGAGGGTTGCGGCAGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * * ** * *
5959115 TGATCGGTAGCAGGCAAAGGGGGACCCGA-TCG-AT-CCCCGG-TTTGCGCATC-C-CGC-C-CT
391 GGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGCTGAGCGC-CCGCACGCTCGTT
** * * * ** * *****
5959172 TC-T-GGCCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGATCTAAGCATACGGAGTTCATTC
455 TCGTGGGTTGACTTAG-G--CATACG-GAG-TTCATTCCCAG-TCTAAGCATACGGAGTTCATTC
** * * *
5959235 CCAGTCTAAGATCGGAATGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGGATGTGCTGGT
514 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGT
* ** * * * *
5959300 GCCACATTTTTCTTTGCCGGGGCA-C--CAT-----CA-C--CGAAGAACCTAACCGACGGCATT
579 GCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* *
5959354 GGGGTTCTGGCGATCAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
644 GGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
5959419 GCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
709 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTT
5959484 GAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCAAAT
774 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
5959547 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT
839 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * * * *
5959588 TTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTGCCAATTTTAGGGCCAAAAATTCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * *
5959653 AAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5959717 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
5959782 TGGCATTGCCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCTATGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * **
5959847 TTGCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCTCCCGCTCATTTAATCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * *
5959912 TTGGCTTAGGCATACGGTGTTCAATCCCAGTGTAAGATTGAACCAGATCGAGGGTTGCGGCAGTA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * *
5959977 GGATCGGCAGCACGCAGAGGGGGACCCGA-TCG-AT-CTCCTGCT-TGCGCATCTCGC-CCCTC-
391 GGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGCTGAGCGC--C-CGCACGCTCG
** * * *
5960036 TGGCCGGTTGAGCGCTTGCACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCTTATGGAGTTCA
453 T-TTC-G-TG-G-G-TTG-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * ** *
5960101 TTCCCAGTCTAAGATCGGACCGGAACGAGGGTTCCGGCAGCACATGTTGGGCTTGGGCATGTTCT
511 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCT
* * * *
5960166 GGTACCGCATTTTTCTTCAC-CGGG------CA-C----CATCGTCGGAGAACCTGACCGACGGT
576 GGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGC
** * * *
5960219 ATTGGGGTTAC-GATGATCGAGGGTGTCGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGT
641 ATTGGGGTT-CTGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
5960283 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAG
704 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAG
*
5960348 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG--A-TTTTTT
769 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
5960410 GCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
834 -CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5960457 TTTTGTGCATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAAATCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** * * *
5960522 AAAAAATTTTAAAAAATCCCGAATTGAAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTT
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5960587 GTCTTGCCTTGAAACTTCACGTGAATGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
5960652 TTTCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
5960717 TTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCTG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
5960782 TTGGCTCAGGCATACAGAGTTCATTCCCCGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGTA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * * * *
5960847 GGAACAGAATCAAGCAAAGGGGGCCCCAGCCAATCCCCGACTTACGCATCCCGCCCTTCTGGCCA
391 GGATCGGCAGCACGCAGA-GGGG-----G---A--CCCGAC--GCGCAT--C-CCC--C-GG---
* * * * * * * *
5960912 ACTGAGCGCTCGCACGCTTGTTTCATGGGTTGACTTACGCACACGGAGCTCATTCCTAGTCCAAG
434 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*** * **
5960977 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAAACAGAGGGTAACGGCAGCACATGCTGGGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * *
5961042 TCGGGCATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGTCGGAGAA
563 TCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAA
* *
5961107 CCTGACCGACGGCATTGGGGTTCTGGCGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
628 CCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
5961172 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCAATCCCTCATCAAACCTCGAAAACTCATAA
692 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
* * *
5961237 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATCG
757 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
5961302 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGGGTTTTTAGCTGAATTT
822 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5961360 TTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCATGTTTGGGGCCAAAACTCCTCTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
5961425 AAAAAATTTTAAAAAATCCCAAACCGGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5961490 GTCTTGCCATGAAACTTCACATGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
5961555 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCATGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * * * ** * *
5961620 TTGCGCATCCCATCTCTCTGGCCAACATTGTGCCTGTCGGCCCATCCGCCCGCTCGTTTTGTCGA
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * * *
5961685 TTGGGTTAGACATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGGGGGTTGTGGCAGTA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * ** * ** ** ** * * * ** *
5961750 GGATCGACAACAGGTA-TTGAGGTTCCGACGATCGGGGT-GGCCGG-GGGGTGTACGCACAGAT-
391 GGATCGGCAGCACGCAGAGGGGGACCCGACG--C-GCATCCCCCGGCTGAGCGCCCGCAC-GCTC
* * * **** * * *
5961811 G-TGCGATGTGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCA-TC-AAACCT-CGA
452 GTTTCG-TG-G-G-TTG-ACTTAGG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGCATACG-
* * * ** ** * **** * * *
5961871 GAACTCGCA-CCCCCTTAAAGAGCATTTGAGATTTTA-C-A-AGTT--GGCTGC-CA-G-T-AGC
504 G-AGT-TCATTCCCAGTCTA-AG-A-TCG-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * * * * * * * * *
5961926 -CAGTAAAGTGTCTGAAATGCGGACACTTTT-TTCAAAT-GGTCACAAAATC-TTGTA-CA-CTT
563 TCCGGCATGTG-CTG--GTGCCG-CATTTTTCTTC-ACTGGGGCAC--CATCATCGGAGCATCGT
*** * * * * * ******** * *
5961985 C-GAG-TTTTTA---GCTG-AAT--GTTTTTGTGC-AT------GCCAACAAAAAT--ACA-AGG
621 CGGAGAACCTGACCGGCGGCATTGGGGTTCTG-GCGATCGGGGGGCCGGGGGGTGTGCGCACATG
* ** * ** ** * * * ** **** ** * ** **
5962032 A--T-C-ACGTCTACCAAGT--TTGGGAC-AAAAAT-GCCTTCTGGAAAAATTTTAAAAAATCCC
685 ATGTGCGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCT--ATCCCTCATCAAACCTCGA
* **** * *** * *** * * * *
5962089 GAACTGCAAAAAGTTTTGAAA-ATCATGAAAAATAAAAAACGAG-TCGTCTTGCCATGAAACTTC
747 GAACT-CACAACCCCTT-AAAGAGCATTTGAGATTTTACA-G-GTTTG-C-TGCCA-GTAGC--C
* * * * * *
5962152 ACGTGAAG-G-CT-TAA--GGGAC-CATTGTATGAGTTTACAA--GCCATAAAAATGGCATTGGT
803 A-TTAAAGTGTCTGAAATGGGGACAC-TT-T-T---TTCA-AATGGTCA-CAAAAT--C-TT-GT
* * * * ** * * **
5962209 ACGC--AGAAATATGAAGATGTACCT
855 ACACTTCG-AGTTTTTAGCTGAATTT
******* * * * *** ** * * * * *
5962233 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGGGTAGTGCC
1 TTTTGTGCATGCCA-AC-AAAAAT--A---CAAG-G-ATCACG----TCT-ACCA-AGT-TTG-G
* * * ** * *** * **
5962298 TGCC-CACCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCC-AGTC-TAA
49 GGCCAAAACT--CCTTTCG---AAAAAATT---TTA---A-A---A----AATCCCGAACCGTAA
* ** * * * * ** * **
5962360 GATCAG-ACCAAACTGAGGGTTGTAGCAGCAGGATCAACAGCACACAAAG-GGGGACCCGACCGA
95 -A-AAGTTTCAAA---A--ATCGT-G-A--A--A--AATAG-A-A-AACGAGTCGTCTTG-CC-A
*** ** * * ** * * * * ** * * * ***
5962423 T-CCCCGCCCCTCTGGCCGGC-TGAGTGCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGG
140 TGAAACTTCAC-GT-GAAGGCTTAAGGGAC-CA--TT-G--T-ATGAATTTAC-AAGCCATAAAA
* ** * ** * ** * ** * ** * *
5962486 A-GTTCATTCCCA-GTC-TAAGCAT-ACAGA-GT-TC-ATTCCCAGTCTAAGATCAGACCGAACC
195 ATG-GCATTGGCATG-CAGAAATATGA-AGATGTGCCTAAACCCA-CCTACCACCCTATCGATCC
* * * * * * * * ** * * **** *
5962544 GA-GGGTTGCGGAAGCACATGT-T-AGGCTCGG-GCATGTGCTGGTGCTGTATTTTTCTTCGTCG
256 -ACGGCTTGC-GCATCCCGTCTCTCTGGC-CGGCGTA-GTGCCCG-CCCG---CCCGC-CCG-C-
** * ** * * * * * * *
5962605 GGGCAC-CATCGTCGG--GAGCATCATCGG-AGAACCTGACCGATGGCATT--GAGGTTTCGACG
310 CCGCTCGTTTCGTCGGTTG-GC-T--TAGGCA-TA-CGGA--G-T-TCATTCCCA-G--TCTAAG
* **** * * * * * * *
5962664 ATTGGGGGGGTCGGGGGGTTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGC-CCCTTATA
362 ATCGGACCAGACCGAGGG-T-TGCG-GC---A---GC-A-GGAT-C-GGCA---GCACGC--AGA
** ** * * * * ** * * * ** * * **
5962728 TTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCA-CACCAC-CTTAAAGAGCATTT-GAGATT
409 GGGGGACCCGA-CGCGCATC---CC-C-CG-GCTGAGCGCC-CGC---ACGCTCGTTTCGTGGGT
* ** * * * ** * ** * ** * ** **
5962790 TTAC--AGGTTTGCTGTCAGTAGCCATT-AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
463 TGACTTAGGCATAC-G-GAGT--TCATTCCCAGTCTAAG-CATACGG--AGTTCATTCCCA--GT
* * * ** * ** * * ** ** * ** ** *
5962852 CAGAAAATCTTGTACAC-TTCC-A-GTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
519 C-TAAGATC--GGAC-CGGACCGAGGGTTGCGGCAGCA-CATGCTGGGC-T-CCGGC--ATGTGC
** ** * * * * ** * ** * *** * *
5962914 AAG-G-ATCATGTCTACCT-AGTTTGGGGCCAAAACTCATTCCGAAAAAAT-TTTAAAAAATCCC
575 TGGTGCCGCAT-TTTTCTTCA--CTGGGG-CACCA-TCA-T-CG-GAGCATCGTCGGAGAA-CCT
*** ** **** *** * * ** * ** * *
5962975 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT--AGAGAACGAGTCGTCT-TGC-CATGAAACT
631 G-ACCG---GCGGCATTGGGGTTC-TG-GCGATCGGGGGGCCGGGGGGTGTGCGCACATG--A-T
* * ** * * **** **
5963036 -TCTCG-TGAAG-GCT--TA-AAGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
687 GT-GCGATG-GGTGCTGGTACTTGG-CC-CT-TAT--A-TT---GGCC--CCCTAT--CCCT--C
* * ** * ** * * ***
5963095 ATGCAGAA-ATATGAAGATGTGC-CTAAACCCACCT-ACCACCCTATTGAGCCACGGCCTGCGCA
735 AT-CA-AACCT-CG-AGAACT-CAC--AACCC-CTTAAAGAGCAT-TTGAG--A-----T-TTTA
** * * *** * ** * * *
5963157 TCCCGTCTCT-CTGGCCGGCGTAGTGCC-CTCCCGCCCGTCTGCCGGGCATGTGCTGGTGCCGCA
783 -CAGGT-T-TGCT-GCC--AGTA--GCCATTAAAG--TGTCT-----G-AAATG--GG-GACACT
* * ** * * * ** *** * * *
5963220 TTTTTC--TTCGTCGGGGAACCATCATCGGTGCATCACCGGAGAACCTGACTGGCGGCATTGT
829 TTTTTCAAATGGTC--ACAA-AATC-T-TGTACA-CTTC-GAG----TTTTTAGCTGAATT-T
** * * * * * **
5963281 GGTTCCG-GCGATCGGGGGGCCGGGGGAGTGTGCGCATAAGATGTGCGATGGGTGCTGGTACTTG
1 --TTTTGTGC-AT------GCC-----A------ACA-AA-A-ATAC-AAGGAT-CACGT-C-T-
* * * *** * ** ** ** * * ** *
5963345 GCCCTTA-TATT-GGCCCCCTA-TCC-CTC-ATCAAACCTCGAGAACTCACAC-CCCCTTAAAAA
38 -ACC-AAGT-TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAA
* * * ** * ** ** *
5963404 GCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTA-GAGT-GTC-TGAAATGGGGACACT
98 G--TTTCA-A----A-A--ATCG-TGAAAAATAG--AAAACGAGTCGTCTTGCCAT---GAAACT
*** * * ** * * * *** ** ****
5963465 T-TTTTCAAATGG-TCACA-AAATC-TTGTA-CACTTT--AAGTTTTTAGCTGAATTTTTTTGTG
147 TCACGT-GAA-GGCTTA-AGGGACCATTGTATGAATTTACAAG-CCATA--AAAATGGCATTG-G
* * * * *** * ** * ***
5963523 CATGCCAACAAAAATACAAGGATCATGTCC-ACCAAGTTTGGGACCAAAAATCCT-TCCGAAAAA
205 CATG-C-AGAAATAT-GAA-GAT-GTG-CCTA--AA----CCCACCTACCACCCTAT-CGATCCA
**** *** * * * ***** * **** ** * ** **
5963586 ATTTTTAAACATCCCGAACCACGAAAAGTTTTGAAAATCGTGAAAATAGAAAACGAGTCATCTTG
257 CGGCTTGCGCATCCCG--TCTC-------TCTGGCCGGCGT---AGT-GCCCGCCCGCCCGCCCG
* ** * ** * * ** * * * *
5963651 CCATGAAAC-TTAACGT--GAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAAT
309 CC-CG-CTCGTT-TCGTCGGTTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGAT
** ** * * ** * * ** ** * *
5963711 -GG--C--A--TTGGCATGCAGAAATATGAAGAT-GTGCCTAAACACACCTA---CCACCCTA-T
364 CGGACCAGACCGAGGGTTGCGGCAGCA-G--GATCG-G-C--AGCACGCAGAGGGGGACCCGACG
* * * * * * *** *** * **** ** **
5963764 CG-AT-CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAC-CC
422 CGCATCCCCCGGC-TGAGC-GCCCG-CACGCTCG-TTTCGT-G-GGTTG-ACTTAGGCATACGGA
* * * * * * *
5963826 GTTCATTTCGTCGGT-TGGATTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
480 GTTCA-TTC-CCAGTCT--A--A-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * **
5963890 AGGGTTGCGGCAACAGGATCCACAGCAGACAGAGGGGGAC-CCGGCCGATCTGC-GGCTTACGCA
538 AGGGTTGCGG---CA-G---CACA--TG-C----TGGG-CTCCGG-C-ATGTGCTGG-TGCCGCA
*** * * * * * *
5963953 TCCTGCCCCTCTAGCTAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
585 T--TTTTCTTC-A-CT-G--GGGCA--C-CA---TC--ATC---GG-AG-C--A-TCGT-CGGAG
** * ** * * * * ** * ***** *
5964018 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAAACCGGATTACGGGT-TG
626 AACCTGACC-GGC--GGCAT-TGGGGTTC--TGGC-GA-T-CG-GGGGGCCGG----GGGGTGTG
* * * * * * ** * ***
5964082 CGGCAGCA-CATGCTGGGCTCGG-GCAT-GTGCTGGTGCCGCATT-T-TT---CTTC-GTCGGGG
677 C-GCA-CATGATG-TGCGATGGGTGC-TGGTACTTG-GCC-C-TTATATTGGCCCCCTATC-CCT
* * * ** * * * * ** * *
5964138 CA-CCATCGTCGGAGCATTGTCGGAGAA--CC-TAATCGA-CGATATTGGGGTTCCGAC-GATCG
734 CATCAAACCTC-GAG-A-ACTC--ACAACCCCTTAA-AGAGC-AT-TTGAGATT-TTACAGGT-T
* ** * ** * * ** * *
5964197 GGGGGCCAGGAGCGGTGTGCGCACATGATGTGTGAGGGGTGCTGGTACTTGGCCCTTATATTGGC
789 TGCTGCCAGTAGCCAT-T----A-AAG-TGTCTGA--AATG--GG-----GACACTT-T-TT---
* ** ** * ** * ** *** ***
5964262 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTT
833 -TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTT
* ** ** * * ** *
5964320 TACAGGTTTGCTACCAGTAGCCATTAAAGTTTCTGAAATGGGGA-CA-GTTTTTTCAA--ATGGG
1 T-----TTTG-T-GCA-T-GCCAACAAAAATAC---AA---GGATCACG-TCTACCAAGTTTGGG
* ** *
5964381 GACAAAATCTTATACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAA
50 GCCAAAA-C---T-C-CTTTCGA------A----AA---AATT-T---T---AA-AAAATC-C--
* * * ** * * * **
5964445 GGATCTTGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACCG
85 CGAAC-CG--TAAAAAGTTT-----CAAAAATC--GT-G-AAAAA---TAGAAAA---CGAGTCG
*** *** * *** * * * * *
5964510 TAAAAAGTTTTGAAAATT-A--TGAAAAATAGAAAATGAGTCGTC-TTGCCATGAAACTTCACGT
132 T--CTTGCCATGAAACTTCACGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AA-TTTAC--
* * * * * * * * * **** *
5964571 GAAGGC-T--TAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATG-G-C-ATTGGCACGTA
184 -AAGCCATAAAAATGG--CATTGGCATGCA--GA-AA--TATGAAGATGTGCCTAAACCCACCTA
* ** * ** * * ** * * * *
5964629 -GA-AATAT-GA---A--GATGTGC-CTAAACC--CAC-CT-ACCACCCTA-TCGATCC-ACGGC
241 CCACCCTATCGATCCACGGCT-TGCGC-ATCCCGTCTCTCTGGCCGGCGTAGT-G-CCCGCCCGC
** ** * * ** * *** ** * *
5964679 TTGCGCATCCCGTCTC-TTTGGCCGACGTAGTGCCCGC-CCGCCCGCCCGCCCGCTCGTT-CC-G
302 CCGC-CCGCCCG-CTCGTTTCGTCG--GT--TG---GCTTAG-GCATACG-GAGTTCATTCCCAG
* * * * ** ** * *
5964740 TC---GGTTGG-CTTAGGCATATGGAGTT-CATTCCCAGTCTAAGATCAGACCAG-AC-C-GAGG
356 TCTAAGATCGGAC-CAGACCGA-GG-GTTGC---GGCAG-C-AGGATC-G-GCAGCACGCAGA-G
** *
5964797 GTTGCGGTAGCAGGATCAGCAGCA-CACAGAGGGGGACCCGG-TCGATC-CCCGGCTTACGCATC
410 G--G-GG-A-CCCGA-C-GC-GCATC-C---------CCCGGCT-GAGCGCCC-GC--ACG---C
** ** * * * ** * ***** * * *
5964859 TCGACCCTC-T-GGCCGACTGAATGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAG
450 TCG--TTTCGTGGGTTGACT-TA-G-GCATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAG
* * *** *
5964922 TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCACATGCTCACCTCTGGCATG
507 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
* ** ** * * * * * *
5964987 TG-TTGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCGTCGACGAAGAACCTAACTGA
572 TGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
** * * *
5965051 CGGCATTGCTGTTCCGACGATCGGGGGGCCGGGGGGGGGTGTGCGCACATGATGTACGATGGGTG
637 CGGCATTGGGGTTCTGGCGATCGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTG
** ** * *
5965116 CTGGTACTTGGCCCTTATATTGGCCCCCTATCGATCATCAAAAATTGAGAACTCAC-ACCTTCTT
699 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACC-CCTT
* **
5965180 AAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCAACAC
763 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
5965245 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATGT
828 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5965297 TTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
5965362 AAAAAAGTTTAAAAAATCTCGAACCGCT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
66 AAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
5965426 CGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* **
5965491 ATGGCATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * *
5965556 CTTGCGCATCCCATCTTTCTGGCCGATGTAGTGCCAGCCCGCCCGCCCACCGGCCCGCTCGTTTT
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC-GCCCGCTCGTTTC
** * *
5965621 GTTAGTTGGTTTAGGCATACGGAGTTCATTCCCAG-C-AGCAGGATTGG--CAG-CACGTAGAGG
321 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA--A-GATCGGACCAGAC-CG-AG-GG
** ** * * * ** * * * **
5965681 GGGCCCCGACCA--ATC-CCCGTCTTGCACA-----TCCC-AC-C-CCTCTGGCCGGCTGAGCGC
380 TTGCGGC-AGCAGGATCGGCAG-CACGCAGAGGGGGACCCGACGCGCATC-CCCCGGCTGAGCGC
* * * *
5965735 ACGCACGCTTGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCA-TCTAAGCATACGGAG
442 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * * ** * *
5965799 TTCATTTCCAGTCTAAGATCGGATCGAACCGAGGGCTACAGTAGCACATAATAGGCT-CGAACAT
507 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCAT
* * * * * *
5965863 ATGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACTTGATC
571 GTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
* * * * * *
5965927 GACGGTATTTGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTG
635 GGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
5965992 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCGTA
699 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTA
* * * * *
5966057 AAGAGCATTTGAGATTGTACAGGTTTCCTGCTAGTAGCCATTAAAGTATCTGAAATAGGGACACT
764 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
5966122 CTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
829 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
5966173 TTTTATGCATGCCAAGAAAAA-AAAAGGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCC
1 TTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * *
5966237 GAAAAAATTTTAAAAATTCCCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
5966302 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
5966367 ATGGCATTGGCATGCAGAAATATGAATATGTGCC-AAAGCCCACCTACCACCCTATTGATCCATG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACG
* *
5966431 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCTCGCTCGTTTCGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
5966488 AGTTGGCTTAGGCATATGGAGTACATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAA
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* *
5966553 CAGGATCGGCAGCACACAGAGGGTGACCCGACCAGTCCCCGGCTTGCGCATCCCGCCCCTCTGGC
389 CAGGATCGGCAGCACGCAGAGGG-G----G---A---CCCGAC--GCGCAT------CC-C---C
* * *
5966618 CGGCTGAGCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
431 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
5966683 AGC-TATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGA-GGTTAACGACAGCACATGCTG
496 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GCGGCAGCACATGCTG
* * * * * * * **
5966746 GGCTCGGGAATGTGCTGCTGCCGTATTTTTCTTCACCGGGGCACCATC-GCGGGACCATCACCGG
560 GGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATC-GGAGCATCGTCGG
* ** * * *
5966810 AGAACCTGACCAGCGGCATTGAAGTT-TCGACGATCGGGGGGCCGGTGGGTGTACGCACATGATG
624 AGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
5966874 TGCGGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCTTCATCAAACCTCGAGAACT
688 TGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5966939 CAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGA
752 CACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
**
5967003 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTT
817 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5967066 TTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCT---AAGTTTGGGGCCAAAACTCCTTTCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
*
5967128 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5967193 ATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
5967258 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
5967323 TTGCGCATCCCGTCTCTCTGGCCGAAGTAGT----GCCCGCCCGCCCACCCACTCGTTTTGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** * * * *
5967384 TTGGCTTAGGCATACGGAGTTCATTTCTTGTCTAAGATCAGACCATACCGAGGGTTGCGACAGTA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * *
5967449 GGGTCGGCAGCACGTAGAGGGGGACCCGAC-CG-AT-CCCCGACTTGTACATCCCACCCCGC-CG
391 GGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGC-TG---A--GC-GCCCGCACG
** * * * *
5967510 AC-CGACT-GAGGGTTG---T-GGCA-ACAG-GTTCA---GCAG--T-A-CATA--GAGTTGGA-
449 -CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-CAT
* * * * * ** *
5967557 --CCGGGC-CA-ATC---CTCGG--C-----TTGC-GCATC-C-CGC--CCCTCTGGCCA----C
512 TCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGG-CATGTGC
* * *** * ** * * * *
5967599 TGAGCGCC-CGTTCGTGGGTTGACTTAGG---CGT-A-CGGAGTTCATTCCCAGTC-TA-AGCAT
575 TG-GTGCCGCATT--TTTCTTCACTGGGGCACCATCATCGGAG--CA-T--C-GTCGGAGAACCT
* * *** ** * * * *
5967656 -A-CGGAGTTCATTCCCAG-TCT-AAGATCGGACTGGACCGAGGGTTGCTGCAGCACATG-T-TG
631 GACCGGCG-GCATT-GGGGTTCTGGCGATCGG--GGGGCCGGGGGGTG-TGC-GCACATGATGTG
* * * * * * * * * * * *
5967715 GGCTCGG-GCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-AT-CGTCGGAGC-ATCA
690 CGATGGGTGC-TGGTACTTG-GCC-C--TTAT-AT--T--GGCCCCCTATCCCTC--ATCAAAC-
* * ** * * *** * ** * ******** *
5967775 CTGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC-GCACA
742 CTCGAGAA-CTCAC-AAC-CCCTTAAAG---AG-C-AT-TTGAGATTTTACAGGTTTGCTGC-CA
* ** *** * * ** * **
5967839 TGATGTGTGATTGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
797 -G-T-AGCCATTAAAG-T-GT-C--TG-----AAATGGGGACACT-T---TTTTCAAA--T-G-G
** ** * * * *
5967904 AACTCACACCCA-CTTAAAGAGCATTTGAGATTTTA-C--AAGTT
841 ---TCACA-AAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTT
** * ** * * * * ** * * *
5967945 TGCTGCTAGTA-GCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCAGAAA
1 TTTTG-T-GCATGCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAA
** *
5968004 ATCTTGTACAC-TTCGAGTATTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
56 A-C---T-C-CTTTCGA--A---A---AAA-----TT-T---T----A-AAAAAT-C-CCGAAC-
** ** *
5968068 CGTCTACCAAGTTTGGGGCCAAAAAAGGATTTTTGAAAAAATTTCAAAAATCCCGAACCGCAAAA
90 CG--TAAAAAGTTT-----C--AAAA--A-TCGTG-AAAAA--T--AGAA-----AA-CG-----
* * ** *
5968133 AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGTCATGAAACTTAACGTGAAGGCTTA
127 AG--TC----GTCTTG--CCAT---GAA--A-----C---T--T----C---ACGTGAAGGCTTA
* ***
5968198 AGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACATAGAAATATGAAGATGTG
162 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * *
5968263 CCTAAACCAACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
227 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
5968328 --------GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTTATTCCCAGT
292 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * ** ** *
5968385 CTAAGATCGAACTGGACTGAGGGTTATGGCAGCAAAATTGGCAGCACGCAGAGGGGGACCCGACC
357 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-C
* * * ** *
5968450 GATCCCGC-CCCTCTGGCCGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGGTTTAGGCATACA
421 G----CGCATCC-C---CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
5968514 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
478 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
5968579 TGCGGCAGCGCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACTAT
543 TGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCAT
* * ** * * *
5968643 CGTCGGAGCATCGCCGTTGAACCTGACCGGCGGCATTGGGGTTCCGGTGAGCGGGGGGGCCGGGG
607 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGG
* * *
5968708 GAGCGTGCGTACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
671 G-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5968773 ATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
735 ATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
5968838 GCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
800 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
5968903 ATTTTAGCTGAATTT
865 TTTTTAGCTGAATTT
* * * * * *
5968918 TTTTGTGCATCCCAACAAAAATACAAGCATTACGTATACCAAGTTTGGGGCCAAAACTGCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** * *
5968983 AAGTAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGACTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5969048 ATCCTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5969113 TGGCATTGACA-GACAGAAATACGAGGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
196 TGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
5969177 CTTGTGCATCTCGTCTCTCTAGCTGACGTA--G--CACCCGCCCGCCCGCCCACTCGTTTCATCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* ** * * * *
5969238 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGGTAGC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
*
5969303 AGGATCGGCAGCACGCAGCGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTAGCCG
390 AGGATCGGCAGCACGCAGAGGGGGA--C--CCGA-------C--GCGCAT-----CC-C---CCG
* * * *
5969368 GCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTACG
433 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** ** *
5969433 CATATGGAGTTCATTCTCAGTCTAAGATCAGACTAGATTGAGGGTTGTGGCAGCACATGCT-GGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * ** * **
5969497 TCGGGCATGTGC-GGCTGTCGCA-TTTTCTTTGCCGGGGCACCATCGCCGAAGCATCACCGGAGA
563 TCCGGCATGTGCTGG-TGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGA
* * *
5969560 ACCTGACCGGCGGCATTGGGGTTCAGACGATC-GGGGGCCGGGGGGTGTGTGC-CTATGATGTGC
627 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTGC
* *
5969623 GATTGGTGCTGGTACTTGG-CCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACA
691 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
5969686 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATA
756 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5969751 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
821 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
5969809 TTTTGTGCATCCCAACAAAAATACAAGCATTACGTATACCAAGTTTGGGGCCAAAACTGCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** * *
5969874 AAGTAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGACTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5969939 ATCCTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5970004 TGGCATTGACA-GACAGAAATACGAGGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
196 TGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
5970068 CTTGTGCATCTCGTCTCTCTAGCTGACGTA--G--CACCCGCCCGCCCGCCCACTCGTTTCATCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* ** * * * *
5970129 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGGTAGC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
*
5970194 AGGATCGGCAGCACGCAGCGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCC
390 AGGATCGGCAGCACGCAGAGGGGGA--C--CCGA-------C--GCGCAT------CC-C---CC
* * * *
5970259 GGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
432 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** *
5970324 GCATATGGAGTTCATTCTCAGTCTAAGATCAGACTAGATTGAGGGTTGTGGCAGCACATGCTGGG
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *** * **
5970389 CTCGGGCATGTGC-GGCTGTCGCATTTTTCTTTGCCGGGGCACCATGGCCGAAGCATCACCGGAG
562 CTCCGGCATGTGCTGG-TGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAG
* * *
5970453 AACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGCCGGGGGGTGTGTGC-CTATGATGTG
626 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTG
* *
5970517 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
690 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5970582 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
755 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5970647 AGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
820 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5970706 TTTTGTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCC-TTCT
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * *
5970770 GAAAAAATGTAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTCAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
5970835 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
5970900 ATGGCATTGCCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGA
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
5970965 CTTACGCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCACCCGCCCGCTCGTTTCGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
5971026 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGA
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * *
5971091 AGGATTGCCAGCACACAGAGGGGGATCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCC
390 AGGATCGGCAGCACGCAGAGGGGGA--C--CCGA-------C--GCGCA--T----CC-C---CC
* * * * *
5971156 GGCTGAGCACCCGCCCGCTCGTTTCGTGGGTTGGCTTCGACATACGGAGTTCATTCCCAGTCTAA
432 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
5971221 GCATACGGAGCTCATTCACAGTCTAAGATCGGATTGGATCGACGGTTACGGCAGCACATGCTAGG
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5971286 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATTGTCAGAG
562 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAG
* * * * *
5971350 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGAGTGTGCACATAAGATGT
626 AACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGG-GTGTGCGCACATGATGT
*
5971415 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
689 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5971480 C-ACCCCCTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
754 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * *** * **
5971544 TGGGGAAACTTTTTTCAAATGGTCACAAAATCACGT-CTA-AT--ATGTTTGGGGC-CAA-AA
819 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGA-GTTTTTAGCTGAATTT
* * * * * * * * ** *
5971601 CTCT-TGC---CGAA-AAAATTTTAAAAAG-TCTCGAATCGCAAAAAGTTT--AG--AAAA-T-C
1 TTTTGTGCATGCCAACAAAA--ATACAAGGATCACG--TC-TACCAAGTTTGGGGCCAAAACTCC
* ** * * *** * * * *** *
5971654 -GT-G-AAAAA-TAGAAAACGAGTCATCTTGCCAT-GAAA-CTTC----A-CGTGAAGGCT---T
61 TTTCGAAAAAATTTTAAAA--AATC-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * * * * * *
5971705 AACGA-AC--CATTG-TATG-AA-TTTAC---AAGCCATAAAAAGGG--CATTG---GCATGTAG
123 AACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGC-T--TAAGGGACCATTGTATGAATTTAC
** * **** * * *
5971756 AA---ATATGAA--G-A-T-G--TGC------CT-AA-ACCCACCTACCACCCTATCGATCCACG
184 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA-AACCC-ACCTA-CCAC-
* * * * * * * ** *** *
5971803 GCT-TGCGCATCC-TGTC-T-CTC-TAGCCGGCGCAGT-GCC--CG-CCCGCCCGCCCGCCCGCT
245 CCTAT-CG-ATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
** * * * * * * * ** * *
5971859 CGTTTCG-TCG-GTCG--GCTTAGGCATACGG-AGTTC--ATTCCCAGTCTAAGATC--GGACCG
307 CG-CCCGCTCGTTTCGTCGGTT-GGCTTA-GGCA-TACGGAGT-TCATTCCCAG-TCTAAGATCG
* * * * * * ** * * **
5971915 GACCGAGGGTTGCGGTAGCAAGAT-CGGCAACACGCAGAGG-AGGAC-C--CGGTTGATCCCCGA
366 GACC-A--G--ACCG-AG--GGTTGCGGCAGCA-GGATCGGCAGCACGCAGAGGGGGA--CCCGA
* * *
5971975 CTTGCGCATCCGCCTCTCTGGTTGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCA
420 C--GCGCAT-C-CC-C-C-----GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * * * *
5972040 TACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCTCAGTCTAAGATCGGATCAGACAGT
474 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * *
5972105 GGGTTGCGGCAGCACATGCTAGGCT-CGAGAATATGGTGGTGCCGCATTTCTCTTC-GTCGGGGC
539 GGGTTGCGGCAGCACATGCTGGGCTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGC
* * *
5972168 A-C--CATC---G---C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGAGGGGC
602 ACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGG-GGGGC
*
5972222 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATC
666 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
5972287 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTACT
731 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5972352 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
796 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
5972417 CGAGTTTTTAGCTGAATTT
861 CGAGTTTTTAGCTGAATTT
* * ** *
5972436 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGTGAAAACGCC-TTCT
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * *
5972500 GAAATAATTTTAAAAAATCCTGAACCATAAAACA-TTTCAAAAAACGTGAAAAATAGAAAATGAG
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
5972564 TCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGAGACCATTGTATGAATTTACAAGCCATAAA
129 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*** *
5972629 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
194 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5972694 GTTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGTCC-CTCGTTTCGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * *
5972758 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATC-GACCGGA-CGAGGGTTGCAGCAG
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* * **
5972821 -AAGATCGGCAACACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCACCTCTGGCCTA
389 CAGGATCGGCAGCACGCAGAGGGGGA-CC---CGA-------C--GCGCATCC-CC-C-GG----
* * * *
5972885 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCTTTCCCAGTCTAAGC
434 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
5972950 ATACGGAGTTCATTCACAGTCTAAGATC-GA-CAGA-CGAGGGGTTGCGACAGCACATGCT-GGC
499 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGGGC
* * * *
5973011 T-CGAGAATGTGGTGGTGCCGCA-TTTTCTTC-GTCGGGGCA-CATCAT---AG---CG-CCGAG
563 TCCG-GCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAG
*** *
5973065 AACCTGACCGTTAGCATT--GGTTCCGGTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
626 AACCTGACCGGCGGCATTGGGGTT-C--TGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
5973128 TGTGAT-TGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCAAGAACTC
688 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5973192 AC-ACCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAA
753 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5973256 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATGT
818 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5973317 TTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
5973382 AAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTT-TAAAATCATGAAAAATAGAAAAGGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5973446 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5973511 TGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
5973576 TTGCGCATCCCGTATCTCTGG-CGGACGTAGT--------GCCCGCCCGTCCGCTCGTTTCGTCG
261 TTGCGCATCCCGTCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * ** * ** * * * *
5973632 GTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGTTTACAGTAGC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* *
5973697 AGGATTGGCAGCATC-CAGAGGGGG-CCTTGGTCGATCCCCGGTTGTGCATCCCGCCCCTCTGCC
390 AGGATCGGCAGCA-CGCAGAGGGGGACC-----CGA----C----GCGCAT------CC-C--CC
* ** *
5973760 TGGTTGAGTACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
432 -GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
5973825 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTACATGCTGG
496 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** ** * * *
5973890 GCTTGGGCATGTGCTGGTGCCATATTTTTCTT--C----G------C--CGAAGCATCGCCAGAG
561 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAG
*
5973941 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
626 AACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
5974006 GCAATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACGTCCAGAACTCA
689 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
5974071 CACCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGCAGCCAGTAGCCATCAAAGTGTCTGAAA
754 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5974136 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCTAGTTTTTAGCTGAATTT
819 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5974197 TTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACACCTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTTC
* * * * * *
5974262 AAAAAAATTTTAAAAAATTCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
65 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
5974327 CGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * *
5974392 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGG
195 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * * *
5974457 CTTGCGCATCCTGTCTCTCTGGCCGACGTAGCACCCGCACGTCCGCCTGCCCGCTCATTTCGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * ** * *
5974522 GTTGGCTTAGGCCTACGGAGTTTATTCCTAGACCAAGAT-GGACTGGACCGAGGGCTGCTGCAGC
325 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* *
5974586 AGGATCGGCAGCATGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
390 AGGATCGGCAGCACGCAGA--GGG----G---GA--CCCGAC--GCGCAT----CCCC-C--G--
* * * *
5974651 AGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
433 -GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5974716 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGCAGCAACACATGCTGGG
497 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5974781 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCTGAGA
562 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGA
*** * *
5974846 ACCTGACCGGCGGCATTGGGGTTC---C-A-----GGG--ATTGGGTGTACGCCCATGATGTGCG
627 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
5974900 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-A
692 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
* * * * *
5974964 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTCAAAGTATCCGAAATGG
757 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
5975029 GGTCAC-TTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTTGCTGAATTT
822 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
5975086 TTTTATGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCGTCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
5975151 AAAAAATTTGAAAAAATCCCGAACCGCAAAAAG-TTAAAAAATCATAAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * * *
5975215 ATCCTGCCATGAAACTTCACGTAAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
5975280 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATTCATGGC
196 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** *
5975345 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCTTCTCATTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
5975410 TTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGGCGGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * *
5975475 AGATCGACAGCATGCGGAGGTGGACCCGATCGATCCCCATCTTGCACATCCCGCCCCTCTGGTCG
391 GGATCGGCAGCACGCAGAGGGGGACCCGA-CG--------C--G--CAT----CCCC-C-GG-C-
* *
5975540 GTTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
435 --TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
5975605 CATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGATTACGGCAGCACATGCTGGGC
498 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
5975670 -CCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCT-GGGCATCATC-GCTGGAGCAACG-CTGA
563 TCC-GGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCATC-GGAGCATCGTC-GG
* *
5975731 AAAACCTGACCGGCGGCATTGGGGTTCCGCGAGGTCGGATCGGGGGGGCCACGGGGGGTGTAGCG
624 AGAACCTGACCGGCGGCATTGGGGTT---C-TGG-C-GATC-GGGGGG-C-CGGGGGGTGT-GC-
*
5975796 GCACATTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTATGGGCCCCCTATCCCCTCATCAA
678 GCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGCCCCCTAT-CCCTCATCAA
* * *
5975861 ACCTCGAGAACTCGC-ACCTCCTTAAAGTGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCA
740 ACCTCGAGAACTCACAACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
5975925 TT-AAGTGTCTGGAAGATTGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
804 TTAAAGTGTCT-GAA-A-TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
5975989 TTTTTAGCTAAATTT
865 TTTTTAGCTGAATTT
* * *
5976004 TTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * * *
5976068 AAAAAATTTTTTGAAAAATCCGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAC
66 AAAAAA--TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
5976133 TCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
129 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
5976198 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
194 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** * *
5976263 GCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTTGCCCGCTCATTTCATC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC
** * *
5976328 GGTTGGCTTAGGCATACGGAGTTCATTCCC-GATCTAAGATAAGATCAAACCGAGGGTTGCGGCA
324 GGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGCGGCA
** * * * * *
5976392 GCAGGATCGATAGCATGCAGAGGGGGACTCGA-TCG-AT-CCCCTGCT-TGCGCATCC-CAC-C-
388 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGCTGAGCGC--CCGCACGCT
* ** * ** * ***** * *
5976450 C--CTC-T-GGCCGACTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
451 CGTTTCGTGGGTTGACTTAG-G--CATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTC
* ** * * ** *
5976511 ATTCCCAATCTAAGATCGGACCAAACTGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGC
510 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGC
* ** *
5976576 TGGTGCCACATTTTTCTTCA-TCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGGCG
575 TGGTGCCGCATTTTTCTTCACT-GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * * *
5976640 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGCTGG
639 GCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
5976705 TACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTAC-A-CCCTTAAAGA
703 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGA
5976768 GCATTTGAGATTTTA
768 GCATTTGAGATTTTA
5976783 AGGGACCATG
Statistics
Matches: 28559, Mismatches: 5495, Indels: 5773
0.72 0.14 0.14
Matches are distributed among these distances:
830 79 0.00
831 138 0.00
832 2 0.00
833 6 0.00
834 6 0.00
835 16 0.00
836 18 0.00
837 28 0.00
838 30 0.00
839 32 0.00
840 22 0.00
841 80 0.00
842 202 0.01
843 161 0.01
844 181 0.01
845 24 0.00
846 26 0.00
847 10 0.00
848 20 0.00
849 22 0.00
850 41 0.00
851 33 0.00
852 162 0.01
853 19 0.00
854 19 0.00
855 37 0.00
856 34 0.00
857 25 0.00
858 185 0.01
859 198 0.01
860 98 0.00
861 587 0.02
862 394 0.01
863 346 0.01
864 340 0.01
865 79 0.00
866 288 0.01
867 650 0.02
868 272 0.01
869 1136 0.04
870 883 0.03
871 367 0.01
872 312 0.01
873 278 0.01
874 347 0.01
875 469 0.02
876 632 0.02
877 227 0.01
878 669 0.02
879 224 0.01
880 391 0.01
881 438 0.02
882 695 0.02
883 302 0.01
884 172 0.01
885 259 0.01
886 131 0.00
887 418 0.01
888 599 0.02
889 1085 0.04
890 681 0.02
891 872 0.03
892 477 0.02
893 460 0.02
894 771 0.03
895 260 0.01
896 784 0.03
897 962 0.03
898 786 0.03
899 760 0.03
900 232 0.01
901 218 0.01
902 283 0.01
903 877 0.03
904 218 0.01
905 71 0.00
906 45 0.00
907 106 0.00
908 145 0.01
909 26 0.00
910 23 0.00
911 50 0.00
912 22 0.00
913 49 0.00
914 60 0.00
915 23 0.00
916 39 0.00
917 30 0.00
918 148 0.01
919 55 0.00
920 320 0.01
921 33 0.00
922 26 0.00
923 17 0.00
924 22 0.00
925 14 0.00
926 14 0.00
927 22 0.00
928 26 0.00
929 40 0.00
930 25 0.00
931 21 0.00
932 18 0.00
933 18 0.00
934 6 0.00
935 11 0.00
936 16 0.00
937 17 0.00
938 11 0.00
939 11 0.00
940 7 0.00
941 9 0.00
942 14 0.00
943 21 0.00
944 12 0.00
945 8 0.00
946 10 0.00
947 11 0.00
948 1 0.00
949 10 0.00
950 14 0.00
951 4 0.00
952 6 0.00
953 7 0.00
954 18 0.00
955 9 0.00
956 13 0.00
957 5 0.00
958 11 0.00
959 14 0.00
960 16 0.00
961 20 0.00
962 23 0.00
963 30 0.00
964 30 0.00
965 32 0.00
966 9 0.00
967 14 0.00
968 16 0.00
969 28 0.00
970 114 0.00
971 14 0.00
972 23 0.00
973 24 0.00
974 157 0.01
975 12 0.00
976 13 0.00
977 20 0.00
978 13 0.00
979 15 0.00
980 8 0.00
981 13 0.00
982 23 0.00
983 17 0.00
984 12 0.00
985 21 0.00
986 11 0.00
987 14 0.00
988 16 0.00
989 19 0.00
990 17 0.00
991 20 0.00
992 7 0.00
993 22 0.00
994 15 0.00
995 8 0.00
996 16 0.00
997 10 0.00
998 7 0.00
999 12 0.00
1000 6 0.00
1001 2 0.00
1002 19 0.00
1003 9 0.00
1004 15 0.00
1005 21 0.00
1006 11 0.00
1007 21 0.00
1008 8 0.00
1009 28 0.00
1010 35 0.00
1011 47 0.00
1012 44 0.00
1013 32 0.00
1014 24 0.00
1015 26 0.00
1016 29 0.00
1017 30 0.00
1018 49 0.00
1019 23 0.00
1020 12 0.00
1021 18 0.00
1022 24 0.00
1023 23 0.00
1024 405 0.01
1025 371 0.01
1026 348 0.01
1027 352 0.01
1028 312 0.01
1029 260 0.01
1030 301 0.01
1031 387 0.01
1032 318 0.01
1033 323 0.01
1034 293 0.01
1035 300 0.01
1036 878 0.03
1037 247 0.01
1038 241 0.01
1039 315 0.01
1040 283 0.01
1041 262 0.01
1042 315 0.01
1043 329 0.01
1044 316 0.01
1045 406 0.01
1046 723 0.03
1047 268 0.01
1048 178 0.01
1049 131 0.00
1050 127 0.00
1051 139 0.00
1052 115 0.00
1053 417 0.01
1054 266 0.01
1055 134 0.00
1056 244 0.01
1057 250 0.01
1058 299 0.01
1059 403 0.01
1060 261 0.01
1061 186 0.01
1062 160 0.01
1063 206 0.01
1064 133 0.00
1065 135 0.00
1066 223 0.01
1067 198 0.01
1068 542 0.02
1069 212 0.01
1070 143 0.01
1071 126 0.00
1072 143 0.01
1073 138 0.00
1074 575 0.02
1075 328 0.01
1076 333 0.01
1077 669 0.02
1078 65 0.00
1079 46 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACGCGCATCCCCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCAT
TTTTCTTCACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
TGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
Found at i:5944791 original size:26 final size:26
Alignment explanation
Indices: 5944761--5944812 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5944751 TTGACATAGT
5944761 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
5944787 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5944813 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5946498 original size:26 final size:26
Alignment explanation
Indices: 5946462--5946514 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5946452 GTTGACTTGG
5946462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5946488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5946514 G
1 G
5946515 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5947645 original size:869 final size:862
Alignment explanation
Indices: 5938964--5950885 Score: 10926
Period size: 867 Copynumber: 13.6 Consensus size: 862
5938954 ACACTTCGAG
* * * *
5938964 TTTTGTGCATGCCAATAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTTCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** *
5939029 AAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5939094 GTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
5939159 TGCCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * **
5939224 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCTCCCGCCCGTTCGTTTTATCGG
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
5939289 TTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGAGCGGACCAAGGGTT------G-
325 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCAAGGGTTGCGGCAGC
* * * * ** * *** * * **
5939346 -TGAT----TGCACGTAGAGGGGGACCCAGTTGATCCCCGGCTTACGCATCGTACCCTTCTAGTT
389 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
5939406 GGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTGATTCCCAGTCTAA
454 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
5939471 GCATACGGAGTTCATTCCCAGTGTAAGATGGGACTGGATCGAGGGTTGCGACAGCACATGCTGGG
519 G-AT-C-G-G---A---CC-----------GGAC-----CGAGGGTTGCGACAGCACATGCTGGG
* *
5939536 CTTGAG-ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCTGAGCATCGTCGGAGA
558 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGA
* * **
5939600 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
612 ACCTGACCGACGGCATT-GGGTTTCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
5939665 CGATGGGTGCTGGTA-------C-----TTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCGC
674 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5939718 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
739 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5939783 GGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTTCACCTCGAGATTTTT-GCTGAATGT
803 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTT
* *
5939842 TTTTGTGCATGACAAAAAAAATGA-AAGGATC-CTGTCTACCAAGTTTGGGGCCAAAACTCCTTT
1 TTTTGTGCATGCCAACAAAAAT-ACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * * * **
5939905 CCAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAG
63 CCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * * *
5939970 TTGTCTTGCCTTGAAACTTCATGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAA
128 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
5940035 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
193 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
5940100 GCTTGCGCATCCCGTCTCTCTAGCCAGC---GT--CCGCCCGCCCGTCGGCCCGCTCATTTCATC
258 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * ***
5940160 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAAACCGGATTGAGGGTTGCGGCAG
323 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAG
* * **
5940225 CAGGATCAGCAGCACGTAGA-GGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
388 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
5940289 CGACTGAGCGCCCGCTCGCATGCTCGTTTCGTTGGTTGACTGAGGCATACAAAGTTCATTCCCAG
453 CGACTGAGCG--C-C-CGCACGCTCGTTTCG-TGG--G--T------T-----G-AC-TT---AG
* *
5940354 CTAAGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCCACAGCACATGC
493 ----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
* * *
5940418 TGGGCTTGATCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCG
554 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CG
* * * *
5940483 GAGAACCTGACCGACGGCATTGAAGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCACACATGATG
608 GAGAACCTGACCGACGGCATTG-GGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
*
5940547 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
672 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5940612 ACACCCCTTTAAAGTGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
737 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5940677 TTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTAAATTT
801 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5940739 TTTTGTGCATG-CAAAACAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
1 TTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
5940803 AAAAAATTTTAAAAAATCCAGAACTGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGACTC
65 GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5940868 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** ** * * *
5940933 TTGCATTGAAACATAGAAATATAAAGATGTGCCTAAA-CAACCTACCACCCTATCGATCTACGGC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
5940997 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTACCCGCCCGCCCGCCCTCCCGCTCGT
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-ACCCGCCCGCCCG----CCCGCTCGT
** * * * *
5941062 TTCGTCAATTAGCTTAGGCATACGAAGTTCAATCCCAGTGTAAGATCAGACCAGACCGAA-GGTT
317 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTT
* * * ** * * *
5941126 GCGGCAACAGGATCGGCAACACGCAGTGGGGGACCCGATCGATCTCGGGCTTGCACATCCCGCCC
381 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
5941191 CTCTGGCTGGCTGAGCGCTCACACGCTTGTTTCATGGGTTGACTTAGGAATACGGAGTTCATTCC
446 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------
* * *
5941256 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCCC
494 CA---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAC
** * * ** *
5941321 ATATTGGGCTCGACCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGAACC
550 ATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACC
* * * *
5941386 TGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGCGCGAT
615 TGACCGACGGCATT-GGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
5941451 GGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
678 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
* * *
5941516 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGAG
742 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** * *
5941581 ACTTTTTTTTCAAATGTTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTT
807 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5941637 TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
5941702 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5941767 GTCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
5941831 ATGGCATTGACACACAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGG
194 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** *
5941896 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG----CCCGCCCGCTTGCCCGCTCGTTTCGTCT
259 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * **
5941957 GTTGGCTCAGGCATACGGAGTTCATTCCCCA-TCTAAGATCGGTCCAGAGCAAGGGTTATGGCAG
324 GTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAG
* * * * *
5942021 TAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGC-TGAGC-GCCCGCACGCTCGTT
388 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC-C-C-C---
** * ** * * * *** **
5942084 TCATGGGTTGACTTAG-GTATACGGA-GTTC-ATTC-CCAG-T--C-TAATCATACGGAGTTCAT
447 TC-T-GGCCGACTGAGCG--CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
5942141 TCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGGCCCG-GCATTTGCTG
508 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
** * **
5942205 GTGTTG-AGTTTTTCTTC-ACTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGTGG
573 GTGCCGCA-TTTTTCTTCGTC-GGGGCA-C--CATC---G---C--CGGAGAACCTGACCGACGG
* * * * *
5942268 CATTGGGATTCTAGCGATCGGGGGGGTCGAGGGG-GTGCACACATGATGTGCGATGGGTGCTGGT
625 CATTGGGTTTCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5942332 ACTTGGCCCTTATATTCG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAG
688 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTTAAAGAG
*
5942396 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
752 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5942461 CAAATGGTCA-AAAAACTTGTACAGTTCGAG-TTTTAGCTGAATTT
817 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
5942505 TTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCAGGCCAAAACTCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
5942570 AAAAAATTTAAAAAATCTCAAACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
66 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
5942635 TCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 TCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
5942699 TGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATTGATTCACGAC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5942764 TTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGCCCGCCCGTTCGTTTCGTCGG
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
** * * * * *
5942828 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGACAACA
325 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* * * * * * *
5942893 AGATCGGCAACACGCAGAGGGGGACCCGGTCGATGCCCGGCTTACGCATCCCACCCTTCTGGCCG
390 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
5942958 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCATTCCCAATCTAAG
455 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
5943023 ATTGGATCGGACCGAGGGTTG-GGCAGCACATGCTGGTCTCGGGCATGTGCTGGGGCCGCATTTC
520 ATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
* * *
5943087 TCTTCGCCGGGGCACCATCGCTGGATCATCACCGGAGAACCTGACCGACGACATTGAGGTTCCGA
585 TCTTCGTCGGGGCACCAT--C--G-------CCGGAGAACCTGACCGACGGCATTG-GGTTTCGA
* * *
5943152 CGATCGGGGGGGCCGAGGGGTGTGCACACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
638 CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
5943217 TTGGCCCCCTATCCCTCATCAAACCTGGAGAACCCACACCCCCTGAAAGAGCATTTGAGATTTTA
702 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* *
5943282 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAA
766 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5943347 ATCTTGTACATTTCGAGTTTTTAGCTAAATTG
831 ATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * ** * *
5943379 TTTTATGCAAGCCAATAAAAATACAAGGATCACGTCAACCATGTTTGAAGCCAAAAATCCTTCTG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * **
5943444 AAAAAATTTAAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
**
5943509 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGGCATTGTATGAATTTACAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5943574 TGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
5943639 TTGCGCATCCCGTCTCTCTGGCCGGCATAGCGCCCGCCCGCCCGCCCGTCCGCTCATTTTGTCGG
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * ** * * * *
5943704 TTGGCTTAGGCATATGAATTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAACA
325 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* * * * * *
5943769 GGATCAGCAACACACAGAGGGGGACCCGGCCGATCCCTGGCTTGGGCATCCTGCCCCTCTGGCCG
390 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
5943834 ACTGAGTGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
455 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A--C---G
* * * *
5943899 CATTTGAAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTTCAACAGCACATGCTGGGG
500 -----G-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * * * *
5943964 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGAGTA--A-CGTCTGAGAACCTGACCGACA
559 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACG
* **
5944026 GCATTAGGG-TTCTGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTATGATGGGTGCTG
624 GCATT-GGGTTTC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
5944090 GTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
686 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAG
*
5944155 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTT
750 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
5944220 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
815 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
5944268 TTTTGTGCATGCCAAAAAAAATACAATGATCACGTCCACCAAGGTTGGGGCCAAAAATCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** ** * * ** *
5944333 AAAAAAGGTTAAAAAATCCTAAACCGTAAAAAGCTTT-GAAAATTGCAAAAAATAGAAAACGGGT
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
5944397 CGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTAAAAGCTATAAAA
129 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
5944462 ATGGCATTGGCACTCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTACCAATCCACGG
194 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
5944527 CTTACACATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGTCCGCTCATTTTGTCG
259 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
5944592 GATGGATTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGACCTAA-GGTTGCGGTAG
324 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCGGCAG
* * ** *
5944656 CAGGATTGGCAGCACGCAGAGGGGGAGCCGATCGATCCCCGGCTTGCGCATCCTG-CCCTCTGGC
388 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
5944720 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGTCATACGGAGTTCATTCCCAGTCTA
453 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *** * ** * * * **
5944785 AGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAG-ACA-G-AGGGTTGCG-GCA-GCACAT
518 AG-AT-CGGA--CCGGACCGAGGGT-TG--C-GA-CAGCACATGCTGGGCT-CGAGCATGTGC-T
* * * * * * * *
5944845 GCTGCCGTATTTTTCTTTGTCGGGGCACGATCGTCAGAGAACCTGATCGACGGCATTAGGGTTCC
572 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTTC
* *
5944910 GACGATCGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCCATGGAG-GCTGGTACTTGGCCCTT
636 GACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG-GTGCTGGTACTTGGCCCTT
* *
5944974 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCACTTGAGATT
699 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
*
5945039 TTACAAGTTTGCTGCCAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
763 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
5945103 AAAATCTTGTATACTTC-ATGTTTTTAGCTGAATTTT
828 AAAATCTTGTACACTTCGA-GTTTTTAGCTGAA-TTT
* * *
5945139 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT-C-TGCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
5945202 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5945267 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5945331 TTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCCTATCGATCCACG
195 -TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG
* *
5945396 GCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCA----CCCGCCCGCCCGCTCGTTTCATC
258 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * **
5945457 GGTTGGCTTAAGG-ATACGGAGTTAATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAACA
323 GGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCA
* * * * *
5945521 GCAGGATTGACAGCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTGTGCATCCCGCCCCTCTGG
387 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
5945586 CCGACTGAGCGCCCGCACGCTCGTCTCATGAGTTGACTTAGGTATACGGAGTTCATTCCCAGTCT
452 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * * * *
5945651 AAGATCAGACTGGACCGAGGGTTGCGGTAGCATATGCTGGGCTCGAGCACGTGCTGGTGTCGTAT
517 AAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
* * * * *
5945716 TTTTCATT-GCCGGGGCATCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTTCGACGATCAA
582 TTTTC-TTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTTCGACGATC-G
* * * * *
5945780 GGGGGCTGGGGGGTGTGTGCACAGGATGTGCGATAGGTGCTGGTACTTAGCCCTTATATTGGCCC
644 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
5945845 CCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTT
709 CCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
*
5945910 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
773 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
5945975 ACA-----A----TT--C-G-A--G
838 ACACTTCGAGTTTTTAGCTGAATTT
**
5945985 TTTT-T--A-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
5946046 AAAAAATTTTAAGAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5946111 GTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5946176 TGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5946241 TTGCGCATCCTGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGTCCGCCCACTCGTTTCGTCGG
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** ***
5946302 TTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGGCCAGACTGAGGGTTGCAATAGCA
325 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* * * *
5946367 GGATCGGCAGCACGTAGAGGTGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCG
390 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** * * * *
5946432 CCTGCA-CGCTCGTTTCG-TGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
455 ACTG-AGCGCCCG-CACGCT-CG-T---TT---CGT--GG-GTTGA----C--T-TAGGCATACG
** * * *
5946495 GAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGTACATGCTGGGCTCGAGC
500 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* * * * * *
5946560 ATGTGCTGGGGCCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCACCGGAGAATTTGAC
565 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--ACC--------TGAC
* * * * *
5946625 CGGCGGCATTATGGTTTCGACGATCTGGGGGGTCGGGGTGGGTGTGCGCACTTGACGTGCGATGG
619 CGACGGCATT-GGGTTTCGACGATC-GGGGGG-CCGGG-GGGTGTGCGCACATGATGTGCGATGG
5946690 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
680 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-
* *
5946755 TTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
744 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
5946820 ACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTT
809 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5946874 TTTTGTGCATGCTAACAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGGCCAAAAATCCTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCC
* ** * *
5946938 GAAAAATTTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATGGAAAACGAGT
65 GAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* ** **
5947003 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAATGATTGTACAAATTTACAAGCCATAAAA
129 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5947068 ATGGCATTGGCAGGCAGAAATATGAAAATGTGCCT-AACCCACCTACCACCCTATCGATCCACGG
194 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * * * *
5947132 CTTGCGCATCTCGTCTCTCTAGTCGACGTAGTGCCTATCTGCCCGTCCGCCCGCTCATTTCGTCA
259 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
5947197 GTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGATCAAGGGTTGCTGCAGC
324 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGC
* * * * * *
5947262 AGGATCGGTAGCACGCAGAGGGGGACCTGGCTGATCCCCGGCTTGCGCTTCCCACCCCTTTGGCC
389 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * **
5947327 GAATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTGTTCCCAGTCTAA
454 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
5947392 GATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
519 GATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* ** *
5947457 TTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTTCGGTGATCGGGCA
584 TTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTTCGACGATCGGG-G
*
5947522 GGCCAGGGGGGGTGTGTGCGCACATGAGGTGCGATGGGTGCTGGTACTTGG-CCTTCATATTGGC
647 GGCC---GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-ATATTGGC
* *
5947586 CCCCTATCCCTCATCAAACCTTGAGAACTCAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGT
707 CCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
5947651 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGTTCA-AAGAATCC
771 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCT
* * *
5947715 TGTGA-AGTTTGAGTTTTTAGCTGAAATT
835 TGT-ACACTTCGAGTTTTTAGCTGAATTT
* *
5947743 TTTTATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
1 TTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
5947807 AAAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
65 -GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * * *
5947872 CGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGTCATAAGA
129 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5947937 ATGGCATTGGCATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
194 ATGGCATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5948001 GCTTGCGCATCCCATCTCTCTAGCCGACGTAGTGTCAGCCCGCCCGCCCGCCCGTCCGCTCGCTC
258 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCACCCGCCCGCCCG--C-C-CGCTC
* * * * * * * * * * * *
5948066 ATTTCATCAGTTGGGTTAGGCATATGGAGTTGACTCCCAATCTAAGATCGGATCGGACCGA-GG-
315 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
*
5948129 -GC--C-GC--GA----CAGCACGCAGAGGGGGACCCGGCCGA-CCCTCGGCTTGTGCATCCCGC
380 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-CGGCTTGCGCATCCCGC
* *
5948183 CCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATT
444 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
5948248 CCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATTGGACCGAACTGAGCGTTGCGACAGC
509 CCCAGTCTAAG-AT-C-G-G---A---C----C-------GGACCG-A--G-G-GTTGCGACAGC
* * * * *
5948313 ACATGCTTGGCTTCG-GCATGCGCTGGTGCTGCATTTTTCTTTGTCGGGGCCCCATCGCCGGAGC
548 ACATGCTGGGC-TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---GC
* * * * * *
5948377 ATTGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGAAGAT---GGGTCGGGGGGGTGTGCGCA
606 -----CGGAGAACCTGACCGACGGCATT-GGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCA
* * *
5948439 CATCATGTGCGATGGGTGCTGGTACTTGGGCCTTATACTGGCCCCCTATCCCTCATCAAACCTCG
665 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
5948504 AGAACTTAAACCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
730 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
5948569 TCTGAAATGGGGACA-TTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
795 TCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
5948633 ATTT
859 ATTT
* * *
5948637 TTTTTTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-
* * * ** * ** ** * *
5948702 AAAAAATTTTAAAAAA-CCC-AAACTTGCACA-TCCCGACACCATTGTATGAATTTACA-AGCCA
65 GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-A-AAAATCG--TGAA---AAATAG--A
* * * * * * * ** ** *
5948763 TAAA--AAT-GGCATTGGCATACAGAAA-TATGAAGATG--TGCCTAA---ACCCA-CCTACCAC
121 -AAACGAGTCGTC-TTGCCAT---GAAACT-TCACG-TGAAGGCTTAAGGGA-CCATTGTATGAA
** * * **** * * * * * *** ** *
5948818 CCTATCAATCC-GAGGCTTGCGCATCCCGTCTCCCTG---GCCGGCG-TGGTGCCT--GCCCACT
178 TTTA-CAAGCCATAAAAATG-GCAT--TGGCACGCAGAAATATGAAGAT-GTGCCTAAACCCAC-
* * * ** * * * * *
5948876 CGT-CCGCCCGT-TTGTTTCGTCGG-TTG-GCAT--AGGCAT-AC-GG--AG-GTCA-TTCCCAG
237 C-TACCACCC-TATCG-ATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGT-AGTGCCCA-
** * * * * * * * * * * ***
5948929 TCTAAGATCGGACCAGACCG-TGGGTT-GT-GGTAGTAGGATCA-ACAATAAGTAGAGGGGGA--
296 -C-CCG-CCCG-CCCGCCCGCTCGTTTCGTCGGT--T-GGCTTAGGC-ATACG--GA-GTTCATT
* * * * ** * ** * *
5948988 CCCGGTC---GAT----CC---CCAA--CTTGC-ACATCCCGACCCTCTGGTCA-GCTA-A---T
350 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGC-AG-CACGC-AGAGGGG
* ** * * **** ** * * ***
5949035 GACCC-GCACGTTCATTTCGTGGGTTGACTTAGGCAT-ACGAAGTTCATTCCCAGTCTAAGCATA
412 GACCCGGC-CG---A-TCCCCGGCTTG-C----GCATCCCGCCCCTC-TGGCC-GACTGAGCGCC
* * * *** * * *
5949098 CGGA-GTTC-ATTC-ACAG-T--C-TAAGCATACGGAGTTCGTTCACAGTCTAAGAGT-GGACCG
465 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCG
* ** * * *
5949155 GATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTGTCG
529 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ***
5949220 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGGCCGGCAGCATTGGGGATCCGGTAATC-GGG
594 GGG------CA-C----CATCGCCGGAGAACCTGACCGACGGCATT-GGGTTTCGACGATCGGGG
* * *
5949284 GGCCGGGGGGTGTGCACACATGATGTGCGATGGGAGCCGGTACTTGGCCCTTATATTGGCCCCCT
647 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
5949349 ATCCCTCATCAAACCTTGCGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
712 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
5949414 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGTTCA-AAGAATCCTGTGA-
777 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGT-AC
* * *
5949477 AGTTTGAGTTTTTAGCTGAAATT
840 ACTTCGAGTTTTTAGCTGAATTT
* *
5949500 TTTTATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
1 TTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
5949564 AAAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
65 -GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * * *
5949629 CGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGTCATAAGA
129 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
5949694 ATGGCATTGGCATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
194 ATGGCATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** *
5949758 GCTTGCGCATCCCGTATCTCTGGCC-G-GTA-T----A-GTGCCCGCCCGCCCGCTCGTTTTGTC
258 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
5949815 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATTTA-ACC-GAACCGAGGGTTGCGGC
323 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAG-ACCAAGGGTTGCGGC
* * ** **
5949878 AGTAGGATTGGCAGCACATAGAGGGGGACCCATCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
386 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
5949943 GCCGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCTAGTC
451 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
5950008 TAAGATAGGATCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTTCTGGTGCCACA
516 TAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
* *
5950073 TTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGA-GGCATTGGCAT
581 TTTTTCTTCGTCGGGG------CA-C----CATCGCCGGAGAACCTGACC-GACGGCATTGG-GT
* ** *
5950137 TTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGACAGGTGCTGGTACTTGGCCAT
633 TTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * * * *
5950202 TATTTTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCTTTAAAAAGCAATTGACAT
698 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGAT
* * * * *
5950267 TTTATAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGAACACTCTTTTCAAATGGTCA
762 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
5950332 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
827 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5950368 TTTT-TGCATACCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
5950432 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTCTCAAAAATTGTGAAAAATAAAAAACGAGTC
66 -AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5950497 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAA
130 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
5950562 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACTGC
195 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
5950627 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTTGTCAG
260 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * ** *
5950692 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCCACAGGA
325 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* * * * * ** * * *
5950757 AGATCGACAGCACACAGA-AGGGAGCCGATCGATCCTAC-ACTTGCGCATCCCGCCCCTCTAGCC
390 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCC
*
5950820 -AGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
454 GA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5950884 AG
518 AG
5950886 CATACGGAGT
Statistics
Matches: 9205, Mismatches: 1289, Indels: 1104
0.79 0.11 0.10
Matches are distributed among these distances:
842 49 0.01
843 192 0.02
844 169 0.02
845 7 0.00
846 4 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 4 0.00
852 2 0.00
853 5 0.00
854 9 0.00
855 16 0.00
856 15 0.00
857 15 0.00
858 9 0.00
859 32 0.00
860 55 0.01
861 419 0.05
862 157 0.02
863 274 0.03
864 41 0.00
865 37 0.00
866 392 0.04
867 665 0.07
868 229 0.02
869 589 0.06
870 547 0.06
871 326 0.04
872 197 0.02
873 99 0.01
874 350 0.04
875 304 0.03
876 171 0.02
877 12 0.00
878 419 0.05
879 9 0.00
880 5 0.00
881 4 0.00
882 8 0.00
883 7 0.00
884 91 0.01
885 23 0.00
886 59 0.01
887 136 0.01
888 170 0.02
889 632 0.07
890 14 0.00
891 14 0.00
892 148 0.02
893 222 0.02
894 198 0.02
895 149 0.02
896 457 0.05
897 129 0.01
898 271 0.03
899 163 0.02
900 70 0.01
901 9 0.00
902 41 0.00
903 80 0.01
904 16 0.00
905 13 0.00
906 12 0.00
907 84 0.01
908 80 0.01
909 49 0.01
910 1 0.00
911 2 0.00
912 10 0.00
913 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (862 bp):
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAG
GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGTTTCGACGATCGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTT
Found at i:5948268 original size:26 final size:26
Alignment explanation
Indices: 5948232--5948284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5948222 GTTTACTTAG
*
5948232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5948258 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5948284 G
1 G
5948285 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5949104 original size:26 final size:26
Alignment explanation
Indices: 5949067--5949145 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5949057 GTTGACTTAG
* *
5949067 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5949093 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
5949119 GCATACGGAGTTCGTTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5949145 G
1 G
5949146 AGTGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5950393 original size:867 final size:869
Alignment explanation
Indices: 5942127--5950885 Score: 5016
Period size: 889 Copynumber: 10.0 Consensus size: 869
5942117 CCAGTCTAAT
* * * * *
5942127 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGGC
1 CATACGGAGTTCATT-CCAGTCTAAGAGTGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGC
* * ** * * *
5942192 CCG-GCATTTGCTGGTGTTGA-GTTTTTCTTCA-CTGGGGCACCATCATCGGAGCATCGTCGGAG
65 TCGAGCATGTGCTGGTG-CCACATTTTTCTTCATC-GGGGCACCATCACCGGAGCATCGCCGGAG
** ** * * *
5942254 AACCTGACCGGTGGCATTGGG-ATTCTAGCGATCGGGGGGGTCGAGGGG-GTGCACACATGATGT
128 AACCTGACCGGCAGCATTGGGCA-TCCGGCAATC--GGGGGCCGGGGGGTGTGCACACATGATGT
** * * * * * *
5942317 GCGATGGGTGCTGGTACTTGGCCCTTATATTCG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCA
* * * * * *
5942381 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 C-ACCCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAA
* * * * * * * *
5942446 TGGGGACATTTTTTTCAAATGGTCAAA-AAACTTGT-ACAGTTCGAG-TTTTAGCTGAATTTTTT
319 TGGGAACACTCTTTTCAAATGGTCAAAGAATCCTGTGA-ACTTTGAGTTTTTAGCTGAAATTTTT
* ** * *
5942508 TGTGCA-AGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTCAGGCCAAAACTCCTTTCGA
383 TATGCATA-CCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * ** * * * * *
5942571 AAAAATTT-AAAAAATCTCAAACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
446 AAAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
5942635 TCTTCCCATGAAACTTCACGTG-AGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
511 TCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAA
* * * * * *
5942699 TGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATTGATTCACGAC
575 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * * * *
5942764 TTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGCCCGCCCGTTCGTTTCGTCGGT
640 TTGCGCATCCCGTATCTCTGGCCGGCGTAGT--CAGCTGCCCGCCCGCCCGCTCGTTTTGTCAGT
* * * * * * * * **
5942829 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGACAACAA
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGCCACAGGAA
* * * * * * * * * *
5942894 GATCGGCAACACGCAG-AGGGGGACCCGGTCGATGCC--CGGCTTACGCATCCCACCCTTCTGGC
768 GATCGACAGCACACAGAAGGGAG-CCC-ATCGAT-CCTAC-ACTTGCGCATCCCGCCCCTCTAGC
* ** *
5942956 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
829 CAGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
* * * * * * *
5942997 CATACGCAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGTTG-GGCAGCACATGCTGGTC
1 CATACGGAGTTCATT-CCAGTCTAAGAGTGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * ** * * * *
5943061 TCGGGCATGTGCTGGGGCCGCATTTCTCTTCGCCGGGGCACCATCGCTGGATCATCACCGGAGAA
65 TCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAA
* * * * * *
5943126 CCTGACCGAC-GACATTGAGG-TTCCGACGATCGGGGGGGCCGAGGGGTGTGCACACACGATGTG
130 CCTGACCGGCAG-CATTG-GGCATCCGGCAATC--GGGGGCCGGGGGGTGTGCACACATGATGTG
** * * * * ** *
5943189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACCCAC
191 CGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC
* * * * * * *
5943254 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC-AGAAA
256 A-CCCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTA-AAA
* * *
5943318 TGGGGACACTTTTTTCAAATGGTCACAA-AAT-CT-TGTACATTTCGAGTTTTTAGCT-AAATTG
319 TGGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGAAC-TTT-GAGTTTTTAGCTGAAATT-
* * * ** * *
5943379 TTTTATGCA-AGCCAATAAAAATACAAGGATCACGTCAACCATGTTTGAAGCCAAAAATCCTTCT
380 TTTTATGCATA-CCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * ** * *
5943443 GAAAAAATTTAAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
444 AAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGT
** *
5943508 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGGCATTGTATGAATTTACAAGCCATAAAA
509 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAA
* * * * *
5943573 ATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGG
574 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
5943638 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGCGCCCGCCCGCCCGCCCGTCCGCTCATTTTGTCG
639 CTTGCGCATCCCGTATCTCTGGCCGGCGTA--GTCAG-CTGCCCGCCCGCCCGCTCGTTTTGTCA
* * * * * * * ** * * ** **
5943703 GTTGGCTTAGGCATATGAATTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAAC
701 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGCCACAGG
* * * ** ** * * *
5943768 AGGATC-AGCAACACACAG-AGGGGGACCCGGCCGATCCCT-GGCTTGGGCATCCTGCCCCTCTG
766 AAGATCGA-CAGCACACAGAAGGGAG-CCC-ATCGAT-CCTACACTTGCGCATCCCGCCCCTCTA
* * * *
5943830 GCC-GACTGAGTGCCCGCACGCTCATTTTGTAGGTTGACTTAGG
827 GCCAG-CTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
*
5943873 CATACGGAGTTCATTCCCAGTCTAAGCATTTGAAGTTCATTCCCAGTCTAAGATCGGACCTGACC
1 CATACGGAGTTCATT-CCAGTCT-A--A---G-AG-----T----G-----GA-CCGA----ACC
* * * *
5943938 GAGGGTTTCAACAGCACATGCTGGGGTCGAGCATGTGCTGGTGCCGCATTTTTC-T--TC---G-
39 GAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
* * * * * * * * *
5943996 --C--CA---GAGTAACGTCTGAGAACCTGACCGACAGCATTAGGG-TTCTGACGATCGGGGGGG
104 ACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCAGCATT-GGGCATCCGGCAATC--GGGGG
* * ** ** * * * *
5944053 CCGGGAGGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAAT
166 CCGGGGGGTGTGCACACATGATGTGCGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTAT
* ** * * *
5944118 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
231 CCCCCATCAAACCTCAAGAACTCACA-CCCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGC
* * * * * * *
5944183 CAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGT-ACA
295 CAATAGCCATTAAAATGTCTAAAATGGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGA-A
* * * * ** * *
5944246 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGATCACGTCCACCAAG
358 CTTTGAGTTTTTAGCTGAAATTTTTTATGCATACCAATCAAAATACAAGGATCACGTCTACCAAG
* * * ** ** ** * *
5944311 GTTGGGGCCAAAAATCCTTTCGAAAAAAGGTT-AAAAAATCCTAAACCGTAAAAAGCTTTGAAAA
423 TTTGGGGCCAAAACTCC-TTCCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAG-TCTCAAAA
* * * *
5944375 TTGCA--AAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCAT
486 AT-CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
5944438 TGTATGAATTTAAAAGCTATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTACCTAAACC
550 TGTATGAATTTACAAGCTATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACC
* * * * * * * *
5944502 CACCTACCACCCTACCAATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCC
614 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGT-A-GTCAG-CT
* * * * * *
5944567 GCCCGCCCGTCCGCTCATTTTGTCGGATGGATTAGGCATACGGAGTTCATTCCCAGTCTAATATC
676 GCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATC
* ** *** * * * * * * *
5944632 -AGATCGGACCTAA-GGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGAGCCGATCGATCC-
741 GA-ACCAAACC-AAGGGTTGCCACAGGAAGATCGACAGCACACAGA-AGGGAGCCCATCGATCCT
* * * * * * * *
5944694 CCGGCTTGCGCATCCTG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACAT
803 AC-ACTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTT
*
5944758 AGT
867 AGG
* * * ** *
5944761 CATACGGAGTTCATTCCCAGTCTAAGCA-TACGGAGTTC-ATTCCTAGTCTAAGATCGGACCAG-
1 CATACGGAGTTCATT-CCAGTCTAAG-AGT--GGA--CCGA-ACCGAGGGT-TG--C-GA-CAGC
* * ** * ** **
5944823 ACA-G-AGGGTTGCG-GCA-GCACATGCTGCCGTATTTTTCTTTGTCGGGG------CA-C---G
54 ACATGCTGGGCT-CGAGCATGTGC-TGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAG
* * * * * * * * *
5944874 -ATCGTCAGAGAACCTGATCGACGGCATTAGGG-TTCCGACGATCGGGGGGCCGGGGGGGTGTCC
117 CATCGCCGGAGAACCTGACCGGCAGCATT-GGGCATCCGGCAATC-GGGGGCC-GGGGGGTGTGC
* * * *
5944937 GCACATGATGTGC--CATGGAGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
179 ACACATGATGTGCGACA-GGA-GCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAA
* * * * *
5945000 CCTCAAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAGTA-CCATT
242 CCTCAAGAACTCACA-CCCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATT
* * * * * *
5945064 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGT-ATAC-TTCATGTTT
306 AAAATGTCTAAAATGGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGA-ACTTTGA-GTTT
* * * ** *
5945126 TTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACC
368 TTAGCTGAA-ATTTTTTATGCATACCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * ** *
5945191 AAAACT-C-TGCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
432 AAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAA
* *
5945254 TAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
497 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
5945319 CAAGCCA-AAAAATTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCC
562 CAAGCTATAAAAA-TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CC
* * **
5945383 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT--GCCCACCCGCCCGCCCG
625 CTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGTCAG-CTGCCCGCCCGCCCG
** * * * * * *
5945446 CTCGTTTCATCGGTTGGCTTAAGG-ATACGGAGTTAATTCCCAGTCTAAGAT-TAGACCAGACCG
689 CTCGTTTTGTCAGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAAATCGA-ACCAAACCA
* * * * * * ** * * *
5945509 AGGGTTGCAACAGCAGGATTGACAGCACGCAG-AGGGGGACCCGGCCAATCC-CCAGCTTGTGCA
752 AGGGTTGCCACAGGAAGATCGACAGCACACAGAAGGGAG-CCC-ATCGATCCTACA-CTTGCGCA
* ** * * *
5945572 TCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTCTCATGAGTTGACTTAGG
814 TCCCGCCCCTCTAGCCAG-CTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
* * * * ** *
5945628 TATACGGAGTTCATTCCCAGTCTAAGA-TCAGACTGGACCGAGGGTTGCGGTAGCATATGCTGGG
1 CATACGGAGTTCATT-CCAGTCTAAGAGT-GGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
5945692 CTCGAGCACGTGCTGGTGTCGTATTTTTCATTGC--CGGGG---CAT--------CATCGTCGGA
64 CTCGAGCATGTGCTGGTGCCACATTTTTC-TT-CATCGGGGCACCATCACCGGAGCATCGCCGGA
* * * ** * * * * ** *
5945744 GAACCTGACCGACGGTATTGGGGTTTCGACGATCAAGGGGGCTGGGGGGTGTGTGCACAGGATGT
127 GAACCTGACCGGCAGCATTGGGCATCCGGCAATC--GGGGGCCGGGGGGTGTGCACACATGATGT
* * * * * *
5945809 GCGATAGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
190 GCGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCA
* * * * * * *
5945874 CACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCC-CTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAA
* * * *
5945939 TAGGG-ACACTTTTTTCAAATGGTCACAA-AAT-CT-TGTAC----A---ATT--C-G--AGTTT
319 T-GGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGAACTTTGAGTTTTTAGCTGAAATTTT
** *
5945988 TTA-G----CCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGA
382 TTATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * ** * *
5946047 AAAAATTTTAAGAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
446 AAAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
5946112 TCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAAT
* *
5946177 GTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
576 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
5946242 TGCGCATCCTGTCTCTCTGGCCGGCGTAGT--GCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTG
641 TGCGCATCCCGTATCTCTGGCCGGCGTAGTCAG-CTGCCCGCCCGCCCGCTCGTTTTGTCAGTTG
* * * * * ** * * * *
5946305 GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGAT-TAGGCCAGACTGAGGGTTGCAATAGCAGG
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGA-ACCAAACCAAGGGTTGCCACAGGAAG
* ** * * * * * *
5946369 ATCGGCAGCACGTAGAGGTGGA-CCCAGCCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGTC-
769 ATCGACAGCACACAGAAG-GGAGCCCA-TCGATCCTAC-ACTTGCGCATCCCGCCCCTCTAGCCA
* ** * * * * *
5946431 GCCTGCA-CGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAG
831 G-CTG-AGCGCCCG---C-ACGCTT-A-TT--TCGT--GG-GTTGA----C--T-TAGG
** * * * *
5946489 CATACGGAGTTCATTCCCAGTCTAAGA-TCGGATTGGACTGAGGGTTGCGGCAGTACATGCTGGG
1 CATACGGAGTTCATT-CCAGTCTAAGAGT-GGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
* ** *** * ** *
5946553 CTCGAGCATGTGCTGGGGCCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCACCGGAGA
64 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
** * * * * * * * * * *
5946618 ATTTGACCGGCGGCATTATGG-TTTCGACGATCTGGGGGGTCGGGGTGGGTGTGCGCACTTGACG
129 ACCTGACCGGCAGCATT-GGGCATCCGGCAATC--GGGGG-CCGGG-GGGTGTGCACACATGATG
** * * * * *
5946682 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
189 TGCGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTC
* * * * * *
5946747 ACACCCCTTTAAAGAGC-ATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
254 ACACCCC-TTAAAAAGCAAT-TGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAA
* * * * ** *
5946811 AATGGGGACACTTTTTTCCAATGGTCACAA-AATCTTGT-ACACTTCAAGTTTTTAGCTGAAGTT
317 AATGGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGA-ACTTTGAGTTTTTAGCTGAAATT
* * * *
5946874 TTTTGTGCATGCTAA-CAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGGCCAAAAATCCTTC
380 TTTTATGCATACCAATC-AAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTC
* * * ** **
5946937 CGAAAAATTTTAAAAAAATCCCGAACCGA-AAAAAGTTTTGAAAATCATGAAAAATGGAAAACGA
443 CAAAAAAATTTAAAAAAATCCCGAACC-ACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGA
* ** ** *
5947001 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAATGATTGTACAAATTTACAAGCCATAA
507 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAA
* * *
5947066 AAATGGCATTGGCAGGCAGAAATATGAAAATGTGCCT-AACCCACCTACCACCCTATCGATCCAC
572 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * * *
5947130 GGCTTGCGCATCTCGTCTCTCTAGTCGACGTAGTGCCTATCTGCCCGTCCGCCCGCTCATTTCGT
637 GGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGT--C-AGCTGCCCGCCCGCCCGCTCGTTTTGT
* * * * **
5947195 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC-AGACCAGATCAAGGGTTGCTGC
699 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGA-ACCAAACCAAGGGTTGCCAC
* * ** * * * * * * *
5947259 AGCAGGATCGGTAGCACGCAG-AGGGGGACC-TGGCTGATCC-CCGGCTTGCGCTTCCCACCCCT
763 AGGAAGATCGACAGCACACAGAAGGGAGCCCAT--C-GATCCTAC-ACTTGCGCATCCCGCCCCT
* * * * **
5947321 TTGGCC-GAATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
824 CTAGCCAG-CTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
** * * **
5947367 CATACGGAGTTTGTTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 CATACGGAGTTCATT-CCAGTCTAAGAGT-GGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
* **
5947431 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG------CA-C----CATCGCCGGAGA
64 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * ** *
5947485 ACCTGACCGACGGCATTAGGG-TTTCGGTGATCGGGCAGGCCAGGGGGGGTGTGTGCGCACATGA
129 ACCTGACCGGCAGCATT-GGGCATCCGGCAATCGGG--GGCC---GGGGG-GTGTGCACACATGA
* ** * * * **
5947549 GGTGCGATGGGTGCTGGTACTTGGCC-TTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
187 TGTGCGACAGGAGCCGGTACTTGGCCATT-ATATTGGCCCCCTATCCCCCATCAAACCTCAAGAA
* * * * * *
5947613 CTCAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
251 CTCACAC-CCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCT
* * * *
5947678 AAAATGGGGACACTTTTTTCAAATGTTCAAAGAATCCTGTGAAGTTTGAGTTTTTAGCTGAAATT
315 AAAATGGGAACACTCTTTTCAAATGGTCAAAGAATCCTGTGAACTTTGAGTTTTTAGCTGAAATT
5947743 TTTTATGCATACCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
380 TTTTATGCATACCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
** * *
5947808 AAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
445 AAAAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTC
* * * *
5947873 GTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAG-TCATAAGA
510 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCT-ATAAAA
*
5947937 ATGGCATTGGCATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
574 ATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
5948001 GCTTGCGCATCCCATCTCTCTAGCCGACGTAGTGTCAGCCCGCCCGCCCGCCCGTCCGCTCGCTC
638 GCTTGCGCATCCCGTATCTCTGGCCGGCGTA--GTCAG-CTGCCCGCCCG--C--CCGCTCG-T-
* * * * * * * * * ** *
5948066 ATTTCATCAGTTGGGTTAGGCATATGGAGTTGACTCCCAATCTAAGATCGGATCGGACCGA-GG-
694 -TTT-GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGT
* * ** * * *
5948129 -G-C-C-----G--CGACAGCACGCAG-AGGGGGACCCGGCCGACCCT-CGGCTTGTGCATCCCG
757 TGCCACAGGAAGATCGACAGCACACAGAAGGGAG-CCC-ATCGATCCTAC-ACTTGCGCATCCCG
* * ** *
5948182 CCCCTCTGGCC-GACTGAGCGCCCGCACACTCGTTTCGTGGGTTTACTTAGG
819 CCCCTCTAGCCAG-CTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
5948233 CATACGGAGTTCATTCCCAGTCTAAGCA-TACGGAGTTCATTCCAAGTCTAAGATTGGACCGAAC
1 CATACGGAGTTCATT-CCAGTCTAAG-AGT---G-G---A---C----C---GA----ACCG-A-
* * ** **
5948297 TGAGCGTTGCGACAGCACATGCTTGGCTTCG-GCATGCGCTGGTGCTGCATTTTTCTTTGTCGGG
41 -G-G-GTTGCGACAGCACATGCTGGGC-TCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGG
* * * * ** * *
5948361 GCCCCATCGCCGGAGCATTGTCGGAGAACCTGACCGGCAGCATTGGGGTTCC-GAAGAT--GGGT
102 GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGCATCCGGCA-ATCGGGGG
* * * ** * * *
5948423 CGGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGGCC-TTATACTGGCCCCCTA
166 CCGGGGGGTGTGCACACATGATGTGCGACAGGAGCCGGTACTT-GGCCATTATATTGGCCCCCTA
* * * * * * * * *
5948487 TCCCTCATCAAACCTCGAGAACTTAAACCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTGC
230 TCCCCCATCAAACCTCAAGAACTCACACCCCTTAAAAAGCAATTGACATTTTACAGGTTTGCTGC
* * * * * *
5948552 CAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTGCAAATGGTCACAA-AATCTTGT-AC
295 CAATAGCCATTAAAATGTCTAAAATGGGAACACTCTTTT-CAAATGGTCA-AAGAATCCTGTGA-
* * * *
5948614 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-CAAATATACAAGGATCACGTCTACCA
357 ACTTTGAGTTTTTAGCTGAAATTTTTTATGCATACCAATCAAA-ATACAAGGATCACGTCTACCA
* * * **** * * *
5948678 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA-CCCAAACTTGCACATCCCGACACC
421 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAAC---CACAAAAAGTCTCA
*** * * * *
5948742 ATTGT-ATGAATTTACAAGCCATAAAAATG-G-C--ATTGGCATACAGAAA--T-A--TGAA-G-
483 AAAATCATGAA---A-AA--TA-AAAAACGAGTCGTCTTGCCAT---GAAACTTCACGTGAAGGC
* * ** *** ** ** ** *****
5948795 --ATGTG-CC--TAAACCCACCTACCACCCTATCAATCCGA-GGC-TTGCGCATCCCGTCTCCCT
538 TTAAGGGACCATTGTATGAATTTA-CAAGCTAT-AA--AAATGGCATTG-GCA---CGTAGAAAT
* ** * * * * * ** ** *
5948853 -GGCCGGCGTGGTGCCT--GCCCACTCGT-CCGCCCGT-TTGTTTCGTCGG-TTG-GCAT-AGGC
595 ATG-AAG-AT-GTGCCTAAACCCAC-C-TACCACCC-TATCG-ATCCACGGCTTGCGCATCCCGT
* * * *** * * * * * * * * *
5948910 AT-AC-GG-AGGTCATTCCCAGTCTAAGATCGGACCAGACCG-TGGGTTGTGGT-AGTAGGATCA
653 ATCTCTGGCCGG-CGTAGTCAG-CT--G-CCCG-CCCGCCCGCT-CGTT-TTGTCAGTTGGCTTA
* * *** * * * ** **
5948970 -ACAATAAGTAGAGGGGGA--CCC-G------GTCGATCC---CCAA--CTTGCACATCCCGACC
710 GGC-ATACG--GA-GTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGC-CA-CAGGAAG
* * * ** * ** ** ** * ****
5949020 CTCTGGTCAGCTA-A-TGACCCGCACGTTCATTTCG-TGGGTTGACTTAG-GCAT-ACGAAGTTC
769 ATC--GACAGC-ACACAGA-AGGGA-GCCCA--TCGAT-CCTACACTT-GCGCATCCCGCCCCTC
** * *** * *** *
5949080 ATTCCCAGTCTAAGCATACGGA-G-TTCA-TTC-ACAG-T--C-TAAG
825 -TAGCCAG-CTGAGCGCCCGCACGCTT-ATTTCGTGGGTTGACTTAGG
* * * **
5949120 CATACGGAGTTCGTTCACAGTCTAAGAGTGGACCGGATCGAGGGTTGCGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTC-CAGTCTAAGAGTGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGC
* ** *
5949185 TCGAGCATGTGCTGGTGTCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCGCCGGAGAA
65 TCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAA
* * * *
5949250 CCTGGCCGGCAGCATTGGGGATCCGGTAATCGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
130 CCTGACCGGCAGCATTGGGCATCCGGCAATCGGGGGCCGGGGGGTGTGCACACATGATGTGCGAC
* * * ***
5949315 GGGAGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGCGAACTCACACCC
195 AGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCC
* * * * * *
5949380 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
260 CTTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGAA
* * *
5949445 CACTTTTTTCAAATGTTCAAAGAATCCTGTGAAGTTTGAGTTTTTAGCTGAAATTTTTTATGCAT
325 CACTCTTTTCAAATGGTCAAAGAATCCTGTGAACTTTGAGTTTTTAGCTGAAATTTTTTATGCAT
*
5949510 ACCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
390 ACCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
* * * *
5949575 CAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCT
455 AAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
* * *
5949640 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAG-TCATAAGAATGGCATTGG
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCT-ATAAAAATGGCATTGG
*
5949704 CATGTTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 CACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
5949768 CCCGTATCTCTGGCC-G-GTA-T-AG-TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
648 CCCGTATCTCTGGCCGGCGTAGTCAGCTGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGC
* ** * * ** * * * *
5949828 ATACGGAGTTCATTCCTAGTCTAAAATTTAACCGAACCGAGGGTTGCGGCAGTAGGATTGGCAGC
713 ATACGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGCCACAGGAAGATCGACAGC
* * * * * *
5949893 ACATAG-AGGGGGACCCATCCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
778 ACACAGAAGGGAG-CCCAT-CGATCCTAC-ACTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGC
5949956 CCGCACG-TTCATTTCGTGGGTTGACTTAGG
840 CCGCACGCTT-ATTTCGTGGGTTGACTTAGG
* *
5949986 GATACGGAGTTCATTCCTAGTCTAAGA-TAGGATCGAACCGAGGGTTGCGACAGCACATGCTGGG
1 CATACGGAGTTCATTCC-AGTCTAAGAGT-GGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
* *
5950050 CTCGGGCATGTTCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
64 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
5950115 ACCTGACCGG-AGGCATT-GGCATTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCA-GCATTGGGCA-TCCGGCAATC-GGGGGCCGGGGGGTGTGCACACATGATGTG
* * *
5950178 CGACAGGTGCTGGTACTTGGCCATTATTTTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC
191 CGACAGGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC
* *
5950243 ACCCCTTTAAAAAGCAATTGACATTTTATAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAAT
256 ACCCC-TTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAAT
*
5950308 GGGAACACTCTTTTCAAATGGTCACAA-AATCTTGT-ACACTTTGAGTTTTTAGCTG-AATTTTT
320 GGGAACACTCTTTTCAAATGGTCA-AAGAATCCTGTGA-ACTTTGAGTTTTTAGCTGAAATTTTT
* * * * *
5950370 TTTGCATACCAA-CAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTCCGAA
383 TATGCATACCAATC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** **
5950434 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTCTCAAAAATTGTGAAAAATAAAAAACGAGTCGT
447 AAAATTTAAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTCGT
5950499 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
* *
5950564 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACTGCTT
577 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5950629 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTTGTCAGTT
642 GCGCATCCCGTATCTCTGGCCGGCGTAGT--CAG-CTGCCCGCCCGCCCGCTCGTTTTGTCAGTT
* *
5950694 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCCACAGGAAG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGCCACAGGAAG
*
5950759 ATCGACAGCACACAGAAGGGAGCCGATCGATCCTACACTTGCGCATCCCGCCCCTCTAGCCAGCT
769 ATCGACAGCACACAGAAGGGAGCCCATCGATCCTACACTTGCGCATCCCGCCCCTCTAGCCAGCT
*
5950824 GAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGG
834 GAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
5950860 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATT-CCAGTCTAAG
5950886 CATACGGAGT
Statistics
Matches: 6439, Mismatches: 999, Indels: 898
0.77 0.12 0.11
Matches are distributed among these distances:
842 47 0.01
843 185 0.03
844 167 0.03
845 7 0.00
846 2 0.00
847 7 0.00
849 1 0.00
850 1 0.00
851 4 0.00
852 2 0.00
853 5 0.00
854 9 0.00
855 25 0.00
856 10 0.00
857 3 0.00
858 6 0.00
859 21 0.00
860 51 0.01
861 404 0.06
862 92 0.01
863 272 0.04
864 32 0.00
865 29 0.00
866 374 0.06
867 472 0.07
868 153 0.02
869 553 0.09
870 323 0.05
871 269 0.04
872 159 0.02
873 28 0.00
874 327 0.05
875 300 0.05
876 200 0.03
877 10 0.00
878 136 0.02
879 2 0.00
880 8 0.00
881 1 0.00
882 4 0.00
883 5 0.00
884 1 0.00
885 7 0.00
886 16 0.00
887 37 0.01
888 80 0.01
889 574 0.09
890 47 0.01
891 24 0.00
892 132 0.02
893 231 0.04
894 193 0.03
895 97 0.02
896 165 0.03
897 16 0.00
898 9 0.00
899 6 0.00
900 2 0.00
901 8 0.00
902 20 0.00
903 68 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
CATACGGAGTTCATTCCAGTCTAAGAGTGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
CTGACCGGCAGCATTGGGCATCCGGCAATCGGGGGCCGGGGGGTGTGCACACATGATGTGCGACA
GGAGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCC
TTAAAAAGCAATTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGGGAAC
ACTCTTTTCAAATGGTCAAAGAATCCTGTGAACTTTGAGTTTTTAGCTGAAATTTTTTATGCATA
CCAATCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAA
AAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCA
CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTATCTCTGGCCGGCGTAGTCAGCTGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAAATCGAACCAAACCAAGGGTTGCCACAGGAAGATCGACAGCACA
CAGAAGGGAGCCCATCGATCCTACACTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCAC
GCTTATTTCGTGGGTTGACTTAGG
Found at i:5950895 original size:26 final size:26
Alignment explanation
Indices: 5950859--5950911 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5950849 GTTGACTTAG
5950859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5950885 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5950911 G
1 G
5950912 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5952840 original size:26 final size:26
Alignment explanation
Indices: 5952804--5952856 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5952794 GTTGACTTAG
5952804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5952830 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5952856 G
1 G
5952857 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.