Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 53 of 120
Found at i:6101284 original size:883 final size:879
Alignment explanation
Indices: 6099520--6102463 Score: 3524
Period size: 883 Copynumber: 3.3 Consensus size: 879
6099510 TCTACCAAGT
* * * * * *
6099520 TTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGAT-TGAACCGGACTGAGGGTTAC-GATAG
1 TTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCAG-CAG
* * * ** ** * * **
6099583 CAGGATCGACAGCACGCAGAAAGGGACTTGGCCGATCCCTAGCTTGCGCATCCCCCCCTCTAACC
63 TAGGATAG-CAGCATGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCC
* *
6099648 GGCTGAGCGCCCGCACGCTCGTTT-TGTGGTTGACTTAGGCATACGGAGTTCATTGCCAATCTAA
127 GGCTGAGCGCCCGCACGCTCGTTTATG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
6099712 GCATATGGAGGTCATTCCCAGT-TTAGATCGGATC-GAATCGAAGGTT--GTAGCAGTACATGCT
191 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTACG-A-CAGCACATGCT
* * * * * *
6099773 GGGCTCGGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGAACCTGAC
253 GGGC-CCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGAC
* * *
6099838 CGGCGACATTGGGGATCCGAC-ATCGAGGGGG-CGGTGGGGTGTGCGCACATGATGTGCGATGGG
317 CGGCGACATTAGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGG
* **
6099901 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCT
381 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCT
*
6099966 TCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACA
446 TAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * ** * * *
6100030 GTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTGAAGATGAATTTTTTTTGCATGCC
510 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCC
* * * * * * * * *
6100095 AACAAAAAGACAGGGATCATGTCTATCGAGTTTGGGTCCAAATCCCCTTCTGAAAAA-ATTAGAA
574 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAATTTTA-AA
* *
6100159 AAATCCCGAATCGTAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
638 AAATCCCGAA-CGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* *
6100224 CTTCACGTAAAGGCTTAA-GGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
702 CTTCACGTGAAGGCTTAAGGGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
6100288 GAAATGTGAAGATGTGCCTAAAGCCACCTACCACCCT-TCGATCCACGACTTGCGCGTCCTGTCT
767 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC-GTCT
* * * * *
6100352 CTCCGACCGTCGTAGTGCCCCGCCCGCCCGCCCGCCCGCTCATTTTCGTCGG
831 CTCTGGCCGACGTAGTG--CCGCCCGCCCGCCCGCCTGCTTA-TTTCGTCGG
* *
6100404 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAT-A-GGTTGCAGCAG
1 TTGGCTTAGGCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAGA-C-TGAGGGTTGCAGCAG
* * ** * *
6100467 TAGCATAGCAGCATGCGGAGGGGG-CACCAACCGATCCCCAGCTTGCACATCCCGCTCTCTGGCC
63 TAGGATAGCAGCATGCAGAGGGGGAC-CCGGCCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCC
** * *
6100531 AACTGAGCG-CCGCATGCTCGTTTCAGTGGGTTAACTTA-GCATACGGAGTTCATTCCCAGTCTA
127 GGCTGAGCGCCCGCACGCTCGTTT-A-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
6100594 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCACATGCTGG
190 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGG
** * * *
6100659 GCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGAT-GGGGCACCATCGCCGGAGAACTTGACCG
255 GCCCGGGCATGTGCTGGTGCCACATTTTTCTTC-ATCGGGGCACCATCGCCGGAGAACCTGACCG
* * *
6100723 GCGACATTAAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCGAT-GGTGG
319 GCGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** * *
6100787 TACTACTTGGCTCTTATATTGGCCCCCTATCTCTCATCAAACCTCCAGAACTCACACCCCCTTAA
384 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAA
* *
6100852 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
6100917 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAA
513 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAA
* *
6100982 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAATTTTAAAAAATC
578 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAATTTTAAAAAATC
* * *
6101047 TCGAACGGGTAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTC
643 CCGAAC--GTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* * * *
6101112 ACGTGAAGGCTTAAGGGACCATGGTATGAATTTGCAAGCCATTAAAATGGCATTGGCAGGTAGAA
706 ACGTGAAGGCTTAAGGGACCAT-GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
6101177 ATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTCT
770 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCGTCTCTCT
* * * * *
6101242 GGCTGGCATAGTGCCGCCCGCCCGCCCGTCTACTTATTTCGTCGG
835 GGCCGACGTAGTGCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
* * * * * *
6101287 TTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATTAGACCAGATTGAGGGTTGTAGGAATA
1 TTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTA
* * * * **
6101352 GGATCGACAGCATGCAGAGGGGGACCCGGCCGAGCCCCGGCTTGCGCATCCCACCCTCTGGTTGG
65 GGATAG-CAGCATGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCCGG
* *
6101417 CTGAGCGCCCGCACGCTCGTTTATGGTTTGACTTAGGCATACGGAGTTCATTCCCAG-C--ATC-
129 CTGAGCGCCCGCACGCTCGTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
6101478 TA---AG---A-----A-TC--CGA-C-G---A-ACTGAGGGTTACG-CAGCACATGCTGGGCCC
194 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGGCCC
**
6101522 GGGCATGTGCTGGTGCCACATTTTCTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAGAGAA
259 GGGCATGTGCTGGTGCCACA-TTT-TTCTTCATCGGGGCACCAT---C---GC--CG---GAGAA
* * * * * *
6101587 CCTGACCGACGACATTAGGGTTTCAACGATCGGAGGGGCTAGGGGGGTGTGCGCACATGATGTGT
311 CCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
*
6101652 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
375 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
* * *
6101717 -CCCCTTAAGGAGCGTTTGAGATTTTACAGGTTTGCTCCAGTAGCCATTAAAGTGTCTAAAATGG
440 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCAGTAGCCATTAAAGTGTCTGAAATGG
*
6101781 GGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
505 GGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTGC
* * * * *
6101846 ATGCCAAGAAAAATTCAAGGATCGTGTCTACCAAATTT-GGGCCAAAACTCCTTCTGAAAAAATT
569 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTG-AAAAATT
**
6101910 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
633 TTAAAAAATCCCGAA-C-GTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* * *
6101975 ATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACATGCCATGAAAATGGCATTG
696 ATGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
6102040 GCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
760 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
*
6102105 CCCGTCTCTCTGGCCGACGTAGTGCC-CGCCGCCCGCCCGCCTGCTTATTTTGTC-G
825 -CCGTCTCTCTGGCCGACGTAGTGCCGC-CCGCCCGCCCGCCTGCTTATTTCGTCGG
*
6102160 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAGTA
1 TTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTA
* * * * *
6102225 GGATTGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTG
65 GGA-TAGCAGCATGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCG-CCCTCTGGCCG
* * *
6102289 GCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAAG
128 GCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
6102354 CATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGACA-CACATGCTGGGC
192 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGGC
** *
6102418 CCGGGCATACGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCG
257 CCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
6102464 TTGGAGCATC
Statistics
Matches: 1766, Mismatches: 214, Indels: 154
0.83 0.10 0.07
Matches are distributed among these distances:
859 33 0.02
860 15 0.01
861 16 0.01
864 1 0.00
865 1 0.00
866 2 0.00
867 2 0.00
868 2 0.00
869 3 0.00
872 147 0.08
873 404 0.23
874 137 0.08
875 1 0.00
877 4 0.00
878 1 0.00
880 2 0.00
881 5 0.00
882 16 0.01
883 463 0.26
884 297 0.17
885 32 0.02
886 87 0.05
887 20 0.01
889 1 0.00
890 3 0.00
892 2 0.00
893 2 0.00
894 1 0.00
896 16 0.01
897 3 0.00
898 45 0.03
899 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (879 bp):
TTGGCTTAGGCATATGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAG
GATAGCAGCATGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGGCCCGG
GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCGACAT
TAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAAAAAATACA
AGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAATTTTAAAAAATCCCGAACGT
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCGTCTCTCTGGCCGACGTAG
TGCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
Found at i:6101948 original size:873 final size:873
Alignment explanation
Indices: 6099819--6102347 Score: 2922
Period size: 873 Copynumber: 2.9 Consensus size: 873
6099809 ACCGGGGCAC
* ** * *
6099819 CATCGTC-GAAGAACCTGACCGGCGACATTGGGGATCCGAC-ATC-GAGGGGGC-GGTGGGGTGT
1 CATCGTCAG-AGAACCTGACCGACGACATTAAGGTTCCAACGATCGGA-GGGGCAGG-GGGGTGT
* ** *
6099880 GCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAA
63 CCGCACATGATGTGCGAT-GGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
** * *
6099945 CCTGGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
127 CCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
* * * * **
6100010 AAAGTGTCTGAAAT-GGGACAGTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTGAA
192 AAAGTGTCTAAAATGGGGACA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * * * * * * * *
6100074 GATGAATTTTTTTTGCATGCCAACAAAAAGACAGGGATCATGTCTATCGAGTTTGGGTCCAAATC
256 GCTAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAAC
* * * * ** * *
6100139 CCCTTCTGAAAAA-ATTAGAAAAATCCCGAATC-GTAAAAGTTTCAAAAATCGTCAAAAATAGAA
321 ACCTTCCGAAAAATTTTA-AAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAACAGAA
* * *
6100202 AACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAA-GGACCAT-GTATGAATTTACAAGC
385 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGC
* ** * * *
6100265 CATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAAGCCACCTACCACCCT-TCGA
450 CATGAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * ** *
6100329 TCCACGACTTGCGCGTCCTGTCTCTCCGACCGTCGTAGTGCCCCGCCCGCCCGCCCGCCCGCTCA
515 TCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTG-CCCG-CCGCCCGCCCGCCTACTTA
* * *
6100394 TTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCAGACCGGACCAT-A-
578 -TTTCGTC-GTTGGCTTAGGCACATGGAGTTCATTACC-AGTCTAAGATCAGACCAGA-C-TGAG
* * * * * ** * *
6100456 GGTTGCAGCAGTAGCATAG-CAGCATGCGGAGGGGG-CACCAACCGATCCCCAGCTTGCACATCC
638 GGTTGCAGCAATAGGATCGACAGCACGCAGAGGGGGAC-CCGGCCGA-CCCCGGCTTGCGCATCC
* *** * * * * *
6100519 CG-CTCTCTGGCCAACTGAGCG-CCGCATGCTCGTTTCAGTGGGTTAACTTA-GCATACGGAGTT
701 CGACCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACAGAATT
* * * *
6100581 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGA
765 CATTCCCAG-C--ATC-TA---AG---A-----A-TC--CGA-CG----A-ACTGAGGGTTACG-
** * * *
6100646 CAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCA-TTT-TTCTTCGAT-GGGGCACCAT---
805 CAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCACATTTTCTTCTTTG-TCGGGGCACCATCAC
6100705 C---G
869 CGGAG
* * * * *
6100707 C--CG---GAGAACTTGACCGGCGACATTAAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTCCG
1 CATCGTCAGAGAACCTGACCGACGACATTAAGGTTCCAACGATCGGAGGGGCAGGGGGGTGTCCG
* * *
6100767 CACATGATGTGCGATGGTGGTACTACTTGGCTCTTATATTGGCCCCCTATCTCTCATCAAACCTC
66 CACATGATGTGCGATGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
6100832 CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAG
131 CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
*
6100897 TGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
196 TGTCTAAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
*
6100962 ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTT
261 ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACACCTT
* **** *
6101027 CCGAAAAATTTTAAAAAATCTCGAACGGGTAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAG
326 CCGAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAG
* * *
6101092 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTGCAAGCCATTAA
391 TCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCATGAA
*** **
6101157 AATGGCATTGGCAGGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
456 AATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
6101222 GCTTGCGCAT-CCGTCTCTCTGGCTGGCATAGTG-CCGCCCGCCCGCCCGTCTACTTATTTCGTC
521 ACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG-CCGCCCGCCCGCCTACTTATTTCGTC
* * * *
6101285 GGTTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATTAGACCAGATTGAGGGTTGTAGGAA
585 -GTTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAA
* *
6101350 TAGGATCGACAGCATGCAGAGGGGGACCCGGCCGAGCCCCGGCTTGCGCATCCC-ACCCTCTGGT
649 TAGGATCGACAGCACGCAGAGGGGGACCCGGCCGA-CCCCGGCTTGCGCATCCCGACCCTCTGGC
* * * *
6101414 TGGCTGAGCGCCCGCACGCTCGTTT-ATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGCATC
713 TGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGCATC
6101478 TAAGAATCCGACGAACTGAGGGTTACGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCACAT
778 TAAGAATCCGACGAACTGAGGGTTACGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCACAT
6101543 TTTCTTCTTTGTCGGGGCACCATCACCGGAG
843 TTTCTTCTTTGTCGGGGCACCATCACCGGAG
* * *
6101574 CATCGTCAGAGAACCTGACCGACGACATTAGGGTTTCAACGATCGGAGGGGCTAGGGGGGTGTGC
1 CATCGTCAGAGAACCTGACCGACGACATTAAGGTTCCAACGATCGGAGGGGC-AGGGGGGTGTCC
* **
6101639 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGAT-GGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
6101704 TCTAGAACTCACA-CCCCTTAAGGAGCGTTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAA
129 TCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
*
6101767 AGTGTCTAAAATGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
194 AGTGTCTAAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * ** *
6101832 GAATTTTTTTGTGCATGCCAAGAAAAATTCAAGGATCGTGTCTACCAAATTT-GGGCCAAAACTC
259 -AAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACAC
* *
6101896 CTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
323 CTTCCG-AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAACAGAAAA
* *
6101961 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACATGCCA
387 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCA
6102026 TGAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
452 TGAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
6102091 CACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCTGCTTATTTT
517 CACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCGCCCGCCCGCCTACTTATTTC
* * *
6102156 GTCGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGC
582 GTCGTTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGC
* * * * * *
6102221 AGTAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCGGCTTGCGCATCCCGCCCCTCTGG
647 AATAGGATCGACAGCACGCAGAGGGGGACCCGGCCGACCCCGGCTTGCGCATCCCGACCCTCTGG
6102286 CTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAG
712 CTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAG
6102348 TCTAAGCATG
Statistics
Matches: 1435, Mismatches: 167, Indels: 92
0.85 0.10 0.05
Matches are distributed among these distances:
859 33 0.02
860 15 0.01
861 17 0.01
864 1 0.00
865 2 0.00
866 2 0.00
867 2 0.00
868 2 0.00
869 3 0.00
872 147 0.10
873 407 0.28
874 131 0.09
875 3 0.00
877 2 0.00
880 2 0.00
881 3 0.00
882 1 0.00
883 329 0.23
884 202 0.14
885 24 0.02
886 88 0.06
887 18 0.01
888 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
CATCGTCAGAGAACCTGACCGACGACATTAAGGTTCCAACGATCGGAGGGGCAGGGGGGTGTCCG
CACATGATGTGCGATGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
TGTCTAAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACACCTT
CCGAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAG
TCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATGGTATGAATTTACAAGCCATGAA
AATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
ACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCGCCCGCCCGCCTACTTATTTCGTCG
TTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAATA
GGATCGACAGCACGCAGAGGGGGACCCGGCCGACCCCGGCTTGCGCATCCCGACCCTCTGGCTGG
CTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGCATCTAA
GAATCCGACGAACTGAGGGTTACGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCACATTTT
CTTCTTTGTCGGGGCACCATCACCGGAG
Found at i:6102824 original size:310 final size:310
Alignment explanation
Indices: 6102261--6102860 Score: 816
Period size: 310 Copynumber: 1.9 Consensus size: 310
6102251 CGGTCGATCC
*
6102261 CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
6102326 GGCATACAGAATTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
66 GGCATACAGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGATCAGA
*
6102391 CTGAGGGTTACGACACACATGCTGGGCCCGGGCATACGCTGGTGCCACATTTTTCTTCATCGAGG
131 CTGAGGGTTACGACACACATACTGGGCCCGGGCATACGCTGGTGCCACATTTTTCTTCATCGAGG
* **
6102456 CACCATCGTTGGAGCATCACCGGAGAACCTGACCGATGACATTAGGGTTCTGGCGATC-GAGGGG
196 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGATGACATTAGGGTTCCAGCGATCGGAGGGG
* * *
6102520 CTAGGGGGTGTGCTCACATGATGTGTGATGGAAGGGGACCCGGCCAATTTT
261 CCA-GGGGTGTGCGCACATGATGTGCGATGGAAGGGGACCCGGCCAATTTT
* * **
6102571 CGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTA
1 CGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
6102636 GGGATACAGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCCAAGATCAGATCAGA
66 GGCATACAGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGATCAGA
* * * ** ** *
6102701 -TCGAGGGTTTCGGCAGCACATACTGGGCCTGGGCATGTGCTGGTGCGGCATTTTT-TTC-GCTG
131 CT-GAGGGTTACGACA-CACATACTGGGCCCGGGCATACGCTGGTGCCACATTTTTCTTCATC-G
** *
6102763 AGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG--GCAGCATTGGGGTTCCAGCGATCGG
193 AGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGATG-A-CATTAGGGTTCCAGCGATCGG
*
6102826 GGGGGCCAGGGGTGTGCGCACATGATGTGCGATGG
256 AGGGGCCAGGGGTGTGCGCACATGATGTGCGATGG
6102861 GTGCTGGTAC
Statistics
Matches: 252, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
308 1 0.00
309 3 0.01
310 208 0.83
311 40 0.16
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (310 bp):
CGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATACAGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGATCAGA
CTGAGGGTTACGACACACATACTGGGCCCGGGCATACGCTGGTGCCACATTTTTCTTCATCGAGG
CACCATCGTCGGAGCATCACCGGAGAACCTGACCGATGACATTAGGGTTCCAGCGATCGGAGGGG
CCAGGGGTGTGCGCACATGATGTGCGATGGAAGGGGACCCGGCCAATTTT
Found at i:6103152 original size:24 final size:23
Alignment explanation
Indices: 6103108--6103152 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
6103098 ATCCTTCCGA
* *
6103108 AAAAATTTTAAAAAATTTGAACC
1 AAAAAGTTTAAAAAATATGAACC
*
6103131 AAAAAGTTTCAAAAATCATGAA
1 AAAAAGTTTAAAAAAT-ATGAA
6103153 AAATAGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.27
Consensus pattern (23 bp):
AAAAAGTTTAAAAAATATGAACC
Found at i:6103566 original size:26 final size:26
Alignment explanation
Indices: 6103537--6103586 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6103527 TTGACTTAGG
*
6103537 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
6103563 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
6103587 TGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:6104453 original size:26 final size:26
Alignment explanation
Indices: 6104424--6104476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6104414 GTTGACTTAG
6104424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6104450 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6104476 G
1 G
6104477 ATCGGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6107109 original size:26 final size:26
Alignment explanation
Indices: 6107080--6107132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6107070 GTTGACTTAG
* *
6107080 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6107106 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6107132 G
1 G
6107133 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6108564 original size:894 final size:900
Alignment explanation
Indices: 6104495--6109911 Score: 7251
Period size: 896 Copynumber: 6.1 Consensus size: 900
6104485 GGCCGAGTGT
**
6104495 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGACCGG
1 TGCTGGTGCC-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
*
6104559 CGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGC
65 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
** *
6104623 TGGTACTTGGATCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAA
129 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
6104688 AGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCTTTTAAAGTGTCTGAAATGGGGACAC
194 AGAGCATTTGAGATTTTACAGG-TTTGCTGCCAATAGCC-ATTAAAGTGTCTGAAATGGGGACAC
*
6104753 TTTTTTCAAATGGTTACAAAATCTTGTACACTTTG-G-TTTTAGCTGAATTTTTTTTGTGCATGC
257 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * *
6104816 CAAAAAAAATACAAGGATAACGTCTACC-AGTTTTGGGGCCAAAAGTGCTTCCGAAAAAATTTT-
321 CAAAAAAAA-ACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * *
6104879 AAAAATTCCGAACCGCAAAAACTTTCCAAAATCATGAAAAAATAGAAAACGAGTCGTCTTGCCAT
384 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
6104944 GAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAATTGGCATTGGC
448 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * ** *
6105009 ATGTGGAAATGTGAAGATGTGTATAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCC
513 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * ** * *
6105074 CATGTCTC-GGCCAGCGTAGTGCC-CGCCCGTACGCCCGCCCGCTTGTTTCGTCGGTTGGCTTTG
578 CGTCTCTCTGGCCGGCGTAGTGCCTC-CACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
6105137 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGAACTGAGGGTTACAGCAGCAGGATTGGC
642 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAG-AGGATCGGC
* * * * *
6105201 AGCACACAAAGGGGGACCCGATCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
705 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * **
6105266 -CCACACGC-CGTTTCGTAGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGCATAC-GA
770 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
6105328 GTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
835 GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
6105392 G
900 G
** * *
6105393 TGCTGGTGTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GC
1 TGCTGGTGCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
* *
6105457 GG-ATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
66 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
6105519 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAG
131 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
6105583 AGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTTTGAAATGGGGATACTTTT
196 AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC-TTT
* **
6105647 TTTCAAATGGCCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
260 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* ** *
6105712 AAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACGCCTT-CGTAAAAAATTTTAAATA
325 AAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAAAAATTTTAAAAA
* * * *
6105776 TTCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTCGTTTTGCCATGAAAC
388 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
6105840 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
6105905 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCT
518 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
6105970 CTCTGG-C--CG--GTG--T--A-G--TGCCCGCCCGCTCATTT-GATCGGTTGGTTTAGGCATA
583 CTCTGGCCGGCGTAGTGCCTCCACGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATA
* * * * * *
6106022 CGGAGTTCATTCCTAGTCCAAGATCGGACCAGACTGAGGGTTGTGGTAGTAGGATCGGGAGCACA
647 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG-AGGATCGGCAGCACA
* *** *
6106087 TAGAGGGGGACCCTACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGACCGCCCGCA
711 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
6106151 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGCATACGGAGTTCAT
776 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
6106216 TCCCAGTCCAAGATCAGACCAGACTGAGGGTTATGACAGCACATGCTGGGCTCGGGCATG
841 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * *
6106276 TCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATTGCCGGAGAACCTGACCGG
1 TGCTGGTGCC-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
*
6106341 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGTGATGGGTG
65 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * *
6106406 CTGGTATTTTGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCAAGAACTCACACCCCCTTA
128 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
6106471 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCTATTAAAGTGTCTGAAATGGGGACACT
193 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * *
6106536 TTTTTCAAACGGTCACAAAATATTGTAGACTTCGAGTTTTTGGCTGAATTTTTTTTTGCATGCCA
258 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
6106601 ACAAAAAAACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAATCCATCCGAAAAAATTTTTAAA
323 A-AAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * *
6106666 AATCCCGAATCGTAAAAACTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
387 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ** * **
6106731 ATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTACTTTGGCACAC
452 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
6106796 AAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCACATCGCGTC
517 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
6106861 TCTCTGGCCGACGTAGTG-C-CCACCCACTCGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCA
582 TCTCTGGCCGGCGTAGTGCCTCCACGC-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
6106924 TATGGAGTTCATTCCCAGTCTAAGATCAGACCTGA-TCGAGGGTTGTGGCAGCAGGATCGACAGC
645 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAG-AGGATCGGCAGC
** * * *
6106988 ATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCGCCC
708 ACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
6107053 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTT
773 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
6107118 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTTCGGCAGCACATGCTAGGCTCGGGCATG
838 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* *
6107181 TAG-TGGTGCCGTATTTTTCTTTGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCG
1 T-GCTGGTGCC-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
*
6107234 GCGGCATTGGGGTTCCGACGATCGGGTGGGCCGGAGGGTGGTGTGCGCACATGATGTGCGATGGG
64 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGG-GGTGTGCGCACATGATGTGCGATGGG
** * *
6107299 TGCTGGTACTTGGCCCTTATATTGGCTGCCTATCTCTCATCAAACCTTTGAGAACTCACACCCCC
126 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCC
* * *
6107364 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAAC
190 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
*
6107429 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
255 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
6107494 CCAACAAAAATACAAGGATCTCGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTTC
320 CCAA-AAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * ** *
6107559 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTAGCCATG
384 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
6107624 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCA
449 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
6107689 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
514 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
6107754 GTCTCTCTGGCCGGCGTAGTGCCTCCATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
579 GTCTCTCTGGCCGGCGTAGTGCCTCCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
6107819 ATAC-GAGTTCATTCCCAGTCTAAGATC-GA-CGGACTGA-GGTTACGGCA-AGGATTGGCAGCA
644 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGAGGATCGGCAGCA
* * *
6107879 CGCAGA-GGGGACCCGGTCGATCCCCGGCTTGTGCATCCC-CCCCTCTGGCTGGCTGAGCGCCCG
709 CACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
6107942 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
774 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
6108007 ATTCCCAGTCCAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATG
839 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * *
6108068 T-CTGGTGCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGATCCAGACCGGC
1 TGCTGGTGCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
*
6108132 GGCATT-GGGTTCCGGCGATCGGGGGGGCCGGAGAGGGTGTGCGCACATGATGTGCGATGGGTGC
66 GGCATTGGGGTTCCGACGATCGGGGGGGCCGG-G-GGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
6108196 TGGTACTTGGCCCTTATATTGACCCCCTATCACTTATCAAACCTCGAGAACTCACACCCCCTTAA
129 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
6108261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTGTTTGAAATGGGGACACTT
194 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * * * *
6108326 TTTTCAAACGGTCACAAAATATTGTAGACTTCGATTTTTTGGCTGAATTTTTTTCTCCATGCCAA
259 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
6108391 CAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAA
324 -AAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAA
* *
6108456 AATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAA
387 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
6108521 ATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTTTGGCACAC
452 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
**
6108586 AAAAATATGAAGATGTGCCTAAACCCACCTATTACCCTATCGATCCACGGCTTGCGCATCCCGTC
517 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
6108651 TCTCTGGCAGACGTAGTGCC-CACCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCAT
582 TCTCTGGCCGGCGTAGTGCCTC-CACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
6108715 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCA-ACTGAGAGTTGTGGCAGTAGGATCGGCAGCA
646 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGCGGCAG-AGGATCGGCAGCA
* * * * *
6108779 CGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
709 CACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* *
6108844 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTTC
774 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
6108909 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTTCGGCAGCACATGCTAGGCTCGGGCATG
839 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * *
6108971 TAG-TGGTGCCGTATTTTTCTTTGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCT
1 T-GCTGGTGCC-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * *
6109024 GCGGCATTGGGGTTCCGACGATCGGGTGGGCCGGAGGGTGGTGTGCACACATAATGTGCGATGGG
64 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGG-GGTGTGCGCACATGATGTGCGATGGG
* ** ** * *
6109089 TGCTAGTACTTGGCCCTTATATTGGCTGCCTATCTTTCATCAAACCTCAAGAACTCACACCCCTT
126 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
6109154 TAAAGAGCATTTGAGATTTTAC-GAGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
191 TAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
6109218 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
255 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
6109283 TCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTC
320 CCAAAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * *
6109348 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTAGCCATG
384 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
6109413 AAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
449 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
6109478 TGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
514 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
6109543 GTCTCTCTGGTCGGCGTAGTGCCTGCACGCCCGCCCGCCCGCTCATTTTGTCGATTGGCTTTGGC
579 GTCTCTCTGGCCGGCGTAGTGCCTCCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
6109608 ATACAGAGTTCATTCCTAATCTAAGATTAGACCAGA-TCAAGGGTTGCAGCAGCATGATCGACAG
644 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAG-AGGATCGGCAG
* * * * * * * * *
6109672 TACACAGAGAGGGACCCGGTCGATCCACAGCTTGTGCATCCCGCCCCTCTGGCAGGTTGAGTGCC
707 CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
* * * *
6109737 CGCACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGCTCATTCCCAATCTAAGCATACAGAGT
772 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
6109802 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGGATCGGGCATG
837 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
*
6109866 TGCTGGTGCCGATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
1 TGCTGGTGCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
6109912 ATTAAGAACC
Statistics
Matches: 3998, Mismatches: 423, Indels: 191
0.87 0.09 0.04
Matches are distributed among these distances:
879 36 0.01
880 101 0.03
881 52 0.01
882 23 0.01
883 46 0.01
884 48 0.01
885 25 0.01
886 24 0.01
887 18 0.00
888 136 0.03
889 34 0.01
890 89 0.02
891 391 0.10
892 276 0.07
893 305 0.08
894 452 0.11
895 628 0.16
896 718 0.18
897 44 0.01
898 44 0.01
899 3 0.00
900 19 0.00
901 30 0.01
902 139 0.03
903 8 0.00
904 105 0.03
905 204 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TGCTGGTGCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCTCCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGAGGATCGGCAGCACACAGAG
GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
Found at i:6108899 original size:26 final size:26
Alignment explanation
Indices: 6108870--6108922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6108860 GTTGACTTAG
* *
6108870 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6108896 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6108922 G
1 G
6108923 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6109805 original size:26 final size:26
Alignment explanation
Indices: 6109765--6109817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6109755 GTTGACTCAG
*
6109765 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
* *
6109791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
6109817 G
1 G
6109818 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:6110567 original size:117 final size:116
Alignment explanation
Indices: 6110411--6110703 Score: 380
Period size: 117 Copynumber: 2.5 Consensus size: 116
6110401 TTATGTAGGG
*
6110411 AAAATTGATACTTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGGAAAA
1 AAAATTGATAC-TTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTTTAAGG-AAA
* *
6110475 ATTGATACTTTTCAAC-TTCC-CAAAAA-ATATTTTTTTGGAAATTTATTTTTAAGA
63 ATTGATAC-TTTCAACTTTCCTCAAAAACACA--TTTTTGAAAATTTATTTTTAAGA
* **
6110529 AAAATTGATACTTTCAAC-TTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTAAGGAAAAT
* *
6110593 TGATACTTTCAACTTTTCCTCAAAAACCCATTTTTGAAAATTTATTTTTAAGG
65 TGATACTTTCAAC-TTTCCTCAAAAACACATTTTTGAAAATTTATTTTTAAGA
*
6110646 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
6110704 TTTAAAGAAA
Statistics
Matches: 155, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
115 9 0.06
116 36 0.23
117 59 0.38
118 37 0.24
119 14 0.09
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTAAGGAAAATT
GATACTTTCAACTTTCCTCAAAAACACATTTTTGAAAATTTATTTTTAAGA
Found at i:6110599 original size:59 final size:58
Alignment explanation
Indices: 6110409--6110703 Score: 357
Period size: 58 Copynumber: 5.0 Consensus size: 58
6110399 TCTTATGTAG
*
6110409 GGAAAATTGATACTTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATAC-TTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
6110469 GGAAAAATTGATACTTTTCAAC--TTCCCAAAAA-ATATTTTTTTGGAAATTTATTTTTAA
1 GG-AAAATTGATAC-TTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAA
* * **
6110527 GAAAAATTGATACTTTCAAC-TTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
****
6110586 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCATTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
6110644 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTT-ATTTTTA
6110704 TTTAAAGAAA
Statistics
Matches: 204, Mismatches: 20, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
56 7 0.03
57 17 0.08
58 87 0.43
59 46 0.23
60 21 0.10
61 26 0.13
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:6110730 original size:14 final size:14
Alignment explanation
Indices: 6110711--6110767 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
6110701 TTATTTAAAG
*
6110711 AAAATAGAATAATA
1 AAAATAGAAAAATA
6110725 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* *
6110739 AAGAACAGTAAAA-A
1 AA-AATAGAAAAATA
6110753 AAAAT--AAAAATA
1 AAAATAGAAAAATA
6110765 AAA
1 AAA
6110768 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
11 4 0.11
12 4 0.11
13 2 0.06
14 18 0.50
15 8 0.22
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:6110778 original size:17 final size:16
Alignment explanation
Indices: 6110754--6110793 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6110744 CAGTAAAAAA
*
6110754 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
6110770 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
6110787 AAATAAA
1 AAATAAA
6110794 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:6111222 original size:20 final size:20
Alignment explanation
Indices: 6111184--6111223 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6111174 TTCACCAGAT
**
6111184 TCTGGGTTTTGTCGTCGAAA
1 TCTGGGTTTTGTCACCGAAA
*
6111204 TCTGGGTTTTTTCACCGAAA
1 TCTGGGTTTTGTCACCGAAA
6111224 AATTCAAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.40
Consensus pattern (20 bp):
TCTGGGTTTTGTCACCGAAA
Found at i:6111733 original size:9 final size:9
Alignment explanation
Indices: 6111719--6111748 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
6111709 TATTACAAGA
6111719 AAAAATAAT
1 AAAAATAAT
6111728 AAAAATAAT
1 AAAAATAAT
*
6111737 AATAATAAT
1 AAAAATAAT
6111746 AAA
1 AAA
6111749 TAAATTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATAAT
Found at i:6111760 original size:17 final size:17
Alignment explanation
Indices: 6111722--6111771 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
6111712 TACAAGAAAA
6111722 AATAATAA-AAAT-AAT
1 AATAATAATAAATAAAT
6111737 AATAATAATAAATAAAT
1 AATAATAATAAATAAAT
*
6111754 TATAAT-ATATAATAAAT
1 AATAATAATA-AATAAAT
6111771 A
1 A
6111772 TAGAAACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 15 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAATAATAAATAAAT
Found at i:6111765 original size:21 final size:20
Alignment explanation
Indices: 6111722--6111771 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
6111712 TACAAGAAAA
6111722 AATAAT-AA-AAATAATAAT
1 AATAATAAATAAATAATAAT
*
6111740 AATAATAAATAAATTATAAT
1 AATAATAAATAAATAATAAT
6111760 ATATAATAAATA
1 A-ATAATAAATA
6111772 TAGAAACTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 6 0.21
19 2 0.07
20 10 0.36
21 10 0.36
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATAATAAATAAATAATAAT
Found at i:6111817 original size:4 final size:4
Alignment explanation
Indices: 6111808--6111863 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
6111798 AATATTGAAC
* *
6111808 AAAT AAAT AAAT AAAT AAAT AAGT AAA- AATAT ACAT ATAAT AAAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT -AAAT AAAT
6111858 -AAT AAA
1 AAAT AAA
6111864 ATACATAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
3 5 0.12
4 31 0.72
5 6 0.14
6 1 0.02
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:6111847 original size:26 final size:26
Alignment explanation
Indices: 6111818--6111875 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
6111808 AAATAAATAA
*
6111818 ATAAATAAATAAGTAA-AAATATACAT
1 ATAAATAAATAAATAATAAA-ATACAT
6111844 AT-AATAAAATAAATAATAAAATACAT
1 ATAAAT-AAATAAATAATAAAATACAT
6111870 A-AAATA
1 ATAAATA
6111876 CAAAGAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 4 0.14
26 21 0.75
27 3 0.11
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (26 bp):
ATAAATAAATAAATAATAAAATACAT
Found at i:6111864 original size:12 final size:11
Alignment explanation
Indices: 6111812--6111873 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 11
6111802 TTGAACAAAT
6111812 AAATAAATAAA
1 AAATAAATAAA
*
6111823 TAAATAAGTAAA
1 -AAATAAATAAA
6111835 AATATACATATAATA
1 AA-ATA-A-ATAA-A
6111850 AAATAAATAATA
1 AAATAAATAA-A
*
6111862 AAATACATAAA
1 AAATAAATAAA
6111873 A
1 A
6111874 TACAAAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
11 4 0.09
12 28 0.65
13 2 0.05
14 6 0.14
15 3 0.07
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (11 bp):
AAATAAATAAA
Found at i:6111912 original size:20 final size:22
Alignment explanation
Indices: 6111861--6111913 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
6111851 AATAAATAAT
6111861 AAAATACATAAAATACAAAGAAA
1 AAAATACA-AAAATACAAAGAAA
*
6111884 AGGAA-ACAAAAA-A-AAAGAAA
1 A-AAATACAAAAATACAAAGAAA
6111904 AAAATACAAA
1 AAAATACAAA
6111914 GTAAAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
19 2 0.08
20 13 0.50
21 1 0.04
22 4 0.15
23 4 0.15
24 2 0.08
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (22 bp):
AAAATACAAAAATACAAAGAAA
Found at i:6112090 original size:9 final size:9
Alignment explanation
Indices: 6112076--6112118 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
6112066 AACATTGTCA
6112076 TTTTTTTGT
1 TTTTTTTGT
6112085 TTTTTTTGT
1 TTTTTTTGT
** *
6112094 GCTTTGTGT
1 TTTTTTTGT
6112103 TTTTTTTGT
1 TTTTTTTGT
6112112 TTTTTTT
1 TTTTTTT
6112119 TTTCACCAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:6112317 original size:43 final size:42
Alignment explanation
Indices: 6112129--6112414 Score: 284
Period size: 43 Copynumber: 6.7 Consensus size: 42
6112119 TTTCACCAAA
* * *
6112129 GCTCCTCTAAACAGAGGC-TCACGACTTGGATAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAAGTAAATT
* * *
6112170 GCTCCCCTTTAAACAGAGGCACCACGACTTTG-AAAA-CAATTT
1 GCT--CCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
6112212 G-TCCTCTAAACAGAGGCACCACGACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
6112252 GCTTCCTCCT-AACAGAGGCACCACGAC-TTGAAAAAGTTAAATT
1 GC-TCCT-CTAAACAGAGGCACCACGACTTTGAAAAAG-TAAATT
* *
6112295 GCTCCATCTAAAC-GGGGCCACCACGACTTTGAGAAAGTAAATT
1 GCTCC-TCTAAACAGAGG-CACCACGACTTTGAAAAAGTAAATT
*
6112338 GCTCCTCTAACAGCAGGAGGCACCACGACTTTTGAGAAAGGTAAATT
1 GCTCCTCTAA-A-CA-GAGGCACCACGAC-TTTGA-AAAAGTAAATT
* *
6112385 ACTCCTCTAAACAGAGGCCACTACGACTTT
1 GCTCCTCTAAACAGAGG-CACCACGACTTT
6112415 TGGAAAAATG
Statistics
Matches: 209, Mismatches: 16, Indels: 37
0.80 0.06 0.14
Matches are distributed among these distances:
39 26 0.12
40 9 0.04
41 12 0.06
42 42 0.20
43 49 0.23
44 25 0.12
45 19 0.09
46 9 0.04
47 18 0.09
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:6113738 original size:11 final size:11
Alignment explanation
Indices: 6113724--6113753 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6113714 CATTTCTTTC
6113724 TCTTTTTTTTT
1 TCTTTTTTTTT
6113735 TCTTTTTTTTT
1 TCTTTTTTTTT
*
6113746 CCTTTTTT
1 TCTTTTTT
6113754 CATCATCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:6113764 original size:21 final size:19
Alignment explanation
Indices: 6113739--6113783 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
6113729 TTTTTTTCTT
*
6113739 TTTTTTTCCTTTTTTCATCA
1 TTTTTTTCCTCTTTTC-TCA
*
6113759 TCTTTTTTTCTCTTTTCTCA
1 T-TTTTTTCCTCTTTTCTCA
6113779 TTTTT
1 TTTTT
6113784 CATCCATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 5 0.23
21 13 0.59
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTTTCCTCTTTTCTCA
Found at i:6113765 original size:30 final size:30
Alignment explanation
Indices: 6113697--6113787 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 30
6113687 AATTTGAATC
* *
6113697 TCTTTTTTTC-ATTTTCTCATTTCTTTC-TCT
1 TCTTTTTTTCTCTTTTCTCA-TT-TTTCATCA
* * * *
6113727 TTTTTTTTTCTTTTTTTTTCCTTTTTTCATCA
1 TCTTTTTTTC-TCTTTTCT-CATTTTTCATCA
6113759 TCTTTTTTTCTCTTTTCTCATTTTTCATC
1 TCTTTTTTTCTCTTTTCTCATTTTTCATC
6113788 CATTGTTGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
30 19 0.40
31 10 0.21
32 18 0.38
33 1 0.02
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.73
Consensus pattern (30 bp):
TCTTTTTTTCTCTTTTCTCATTTTTCATCA
Found at i:6117837 original size:14 final size:14
Alignment explanation
Indices: 6117818--6117875 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
6117808 TTATTTAAAG
*
6117818 AAAATAGAATAATA
1 AAAATAGAAAAATA
6117832 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* *
6117846 AAGAAAAGAAAAACA
1 AA-AATAGAAAAATA
6117861 AAAAT--AAAAATA
1 AAAATAGAAAAATA
6117873 AAA
1 AAA
6117876 TTAAGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
12 9 0.24
14 17 0.45
15 12 0.32
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.12
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:6117884 original size:17 final size:16
Alignment explanation
Indices: 6117862--6117901 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6117852 AGAAAAACAA
*
6117862 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
6117878 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
6117895 AAATAAA
1 AAATAAA
6117902 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:6118921 original size:3 final size:3
Alignment explanation
Indices: 6118915--6118962 Score: 51
Period size: 3 Copynumber: 14.7 Consensus size: 3
6118905 TTACAAGAAA
*
6118915 AAT AAT AAT AAT AAAT AAT AAT AAT AAAT AAAT TAT AAT ATAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AAT -AAT -AAT AAT AAT A-AT AAT AA
6118963 ATATAGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
3 27 0.68
4 13 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6118933 original size:10 final size:10
Alignment explanation
Indices: 6118918--6119060 Score: 75
Period size: 10 Copynumber: 13.8 Consensus size: 10
6118908 CAAGAAAAAT
6118918 AATAATAATA
1 AATAATAATA
6118928 AATAATAAT-
1 AATAATAATA
6118937 AAT-A-AATA
1 AATAATAATA
*
6118945 AATTATAATA
1 AATAATAATA
*
6118955 TATAATAAATA
1 AATAAT-AATA
* *
6118966 TAGAACTATATA
1 AATAA-TA-ATA
6118978 AATAA-AATA
1 AATAATAATA
*
6118987 CATATAAATATTA
1 -A-AT-AATAATA
*
6119000 ACA-AAAAATA
1 A-ATAATAATA
6119010 AATAAATAAATA
1 AAT-AAT-AATA
6119022 AATAAGTAA-A
1 AATAA-TAATA
6119032 AAT-ATACATA
1 AATAATA-ATA
6119042 TAATAATAATA
1 -AATAATAATA
6119053 AATAATAA
1 AATAATAA
6119061 AATACATAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 36
0.70 0.07 0.24
Matches are distributed among these distances:
7 3 0.03
8 6 0.06
9 10 0.10
10 38 0.36
11 23 0.22
12 22 0.21
13 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.29
Consensus pattern (10 bp):
AATAATAATA
Found at i:6118934 original size:16 final size:16
Alignment explanation
Indices: 6118915--6119070 Score: 100
Period size: 16 Copynumber: 9.9 Consensus size: 16
6118905 TTACAAGAAA
6118915 AATAATAATAATAAAT
1 AATAATAATAATAAAT
6118931 AATAATAATAAATAAAT
1 AATAATAAT-AATAAAT
*
6118948 TATAATATATAATAAAT
1 AATAATA-ATAATAAAT
*
6118965 -ATAGA-ACTATATAAAT
1 AATA-ATAATA-ATAAAT
6118981 AA-AATACAT-ATAAAT
1 AATAATA-ATAATAAAT
* * *
6118996 ATTAACAAAAAATAAAT
1 AATAA-TAATAATAAAT
6119013 -A-AAT-A-AATAAAT
1 AATAATAATAATAAAT
* *
6119025 AAGTAAAAAT-ATACAT
1 AA-TAATAATAATAAAT
6119041 -ATAATAATAATAAAT
1 AATAATAATAATAAAT
6119056 AATAA-AATACATAAA
1 AATAATAATA-ATAAA
6119071 ATACAAAAGA
Statistics
Matches: 110, Mismatches: 12, Indels: 36
0.70 0.08 0.23
Matches are distributed among these distances:
12 7 0.06
13 2 0.02
14 6 0.05
15 24 0.22
16 39 0.35
17 30 0.27
18 2 0.02
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (16 bp):
AATAATAATAATAAAT
Found at i:6118944 original size:4 final size:4
Alignment explanation
Indices: 6118924--6119061 Score: 60
Period size: 4 Copynumber: 34.5 Consensus size: 4
6118914 AAATAATAAT
* * *
6118924 AATA AAT- AAT- AAT- AATA AATA AAT- TATA ATATA TAATA AATA TAGA
1 AATA AATA AATA AATA AATA AATA AATA AATA A-ATA -AATA AATA AATA
* * *
6118970 ACTA TATA AATAA AATA CATATA AATA TTAACA AA-A AATA AATA AATA
1 AATA AATA AAT-A AATA -A-ATA AATA --AATA AATA AATA AATA AATA
* *
6119018 AATA AATA AGTA AA-A ATATA CATA TAAT- AAT- AATA AAT- AATA AA
1 AATA AATA AATA AATA A-ATA AATA -AATA AATA AATA AATA AATA AA
6119062 ATACATAAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
3 25 0.24
4 57 0.55
5 15 0.14
6 7 0.07
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (4 bp):
AATA
Found at i:6118952 original size:27 final size:27
Alignment explanation
Indices: 6118914--6119070 Score: 76
Period size: 25 Copynumber: 6.3 Consensus size: 27
6118904 ATTACAAGAA
*
6118914 AAAT-AATAATAATAAATAATAATAAT
1 AAATAAATTATAATAAATAATAATAAT
6118940 AAATAAATTATAAT--AT-ATAATAA-
1 AAATAAATTATAATAAATAATAATAAT
* *
6118963 ATATAGAACTAT-ATAAATAA-AATACAT
1 AAATA-AATTATAATAAATAATAATA-AT
* *
6118990 --ATAAA-TATTAACAAAAAAT-A-AAT
1 AAATAAATTA-TAATAAATAATAATAAT
* *
6119013 AAATAAA-TA-AATAAGTAAAAAT-AT
1 AAATAAATTATAATAAATAATAATAAT
* *
6119037 ACATATAATAATAATAAATAATAA-AAT
1 AAATA-AATTATAATAAATAATAATAAT
*
6119064 ACATAAA
1 AAATAAA
6119071 ATACAAAAGA
Statistics
Matches: 100, Mismatches: 13, Indels: 36
0.67 0.09 0.24
Matches are distributed among these distances:
23 16 0.16
24 23 0.23
25 27 0.27
26 9 0.09
27 25 0.25
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (27 bp):
AAATAAATTATAATAAATAATAATAAT
Found at i:6119071 original size:39 final size:39
Alignment explanation
Indices: 6118978--6119071 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 39
6118968 GAACTATATA
*
6118978 AATAAAATACATATAAATATTAACAAAAAATAAATAAAT
1 AATAAAATACATAAAAATATTAACAAAAAATAAATAAAT
6119017 AA-ATAAATA-AGTAAAAATA-T-ACATATAATAAT-AATAAAT
1 AATA-AAATACA-TAAAAATATTAACA-A-AA-AATAAATAAAT
6119056 AATAAAATACATAAAA
1 AATAAAATACATAAAA
6119072 TACAAAAGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
37 3 0.06
38 4 0.09
39 35 0.74
40 5 0.11
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (39 bp):
AATAAAATACATAAAAATATTAACAAAAAATAAATAAAT
Found at i:6119073 original size:27 final size:27
Alignment explanation
Indices: 6118914--6119073 Score: 91
Period size: 27 Copynumber: 5.8 Consensus size: 27
6118904 ATTACAAGAA
*
6118914 AAATAATAATAATAAATAATAATAATAAAT
1 AAATAATAA-AATACATAA-AATAAT-AAT
* *
6118944 AAATTATAATATATA-ATAAATATAGA-ACT
1 AAATAATAA-A-ATACATAAA-ATA-ATAAT
* * *
6118973 ATATAAATAAAATACATATAAATATTAAC
1 AAAT-AATAAAATACATA-AAATAATAAT
* *
6119002 AAAAAAT-AAATAAAT-AAAT-A-AAT
1 AAATAATAAAATACATAAAATAATAAT
* *
6119025 AAGTAA-AAATATACATATAATAATAAT
1 AAATAATAAA-ATACATAAAATAATAAT
6119052 AAATAATAAAATACATAAAATA
1 AAATAATAAAATACATAAAATA
6119074 CAAAAGAAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
23 8 0.08
24 5 0.05
25 7 0.07
26 1 0.01
27 26 0.26
28 9 0.09
29 16 0.16
30 23 0.23
31 4 0.04
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (27 bp):
AAATAATAAAATACATAAAATAATAAT
Found at i:6119962 original size:26 final size:26
Alignment explanation
Indices: 6119926--6119978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6119916 GTTGACTTAG
6119926 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
6119952 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6119978 G
1 G
6119979 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6122296 original size:901 final size:899
Alignment explanation
Indices: 6119199--6131993 Score: 14652
Period size: 902 Copynumber: 14.4 Consensus size: 899
6119189 GGTAGGATTA
* *
6119199 GGGTTCC-AGCGATCGGAGGGGCCGGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGGTACTT
1 GGGTTCCGA-CGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6119263 GGCCCTTATGTT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6119327 TGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGT-TAGAAATAGGGACACTTTTTTCAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAA
*
6119391 ATGGTCACAAAATCTTGTACGC-TCTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
193 ATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * *
6119455 TACAAGGATCACGTCTACAAATTTTGGGGCCAAAACACCTTCCGAAAATATTTTAAAAAATCCTG
257 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
** * * * *
6119520 AACCGCAAAAAGTTTCAAAAATTGTGAAAAATTGAAAACGATTCATCTTGCCATGAAACTTCATG
322 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* **
6119585 TGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAACAGAAATA
387 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
6119650 TGAAGATTTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGG
452 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
6119715 TCGACGTAGTGACCGCCCGCCCGCCCGCCCACTCGTTTTGTCGGTTGGTTTAGGCATACAGAGTT
517 CCGACGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * **
6119780 CATTCCTAGTATAAGATCGCACCAGACCGAGGGTTACGGCAGCAAGATCAACAGCACGCAGAGGG
580 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGG
* ** *
6119845 GGACCC-AGTTGATCCCCGGCTTATGCATCCCGCCCCTC-GGCTGGCTGAGCGCCCGCACGCTCG
645 GGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
6119908 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG
709 TTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
6119973 TCTAAGATCGGACCGGACCGAGGGTTACGACAGCACAAGATGGGCTCGGGCATGTGCTGGTGTCG
773 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
6120038 TATTTTTCTTCTTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGATCGGCGGCATTG
838 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
6120100 GGGTTCC-AGCGATCGGGGTGGCCGGGGGGTGTGCGTAGATGATGTACGATGGGTGCTGGTACTT
1 GGGTTCCGA-CGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
6120164 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
6120229 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
6120294 TGATCCCAAAATCTTGTACACATCGAGTTTTTAGCTGAGTTTTTTTGTACATGCCAATAAAAATA
194 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
6120359 CATGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTTAAAAATCCCGAA
259 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAA
* * * * *
6120424 CCGCAAAAAGTTTTAAAAATCATAAAAAATAAAAAACGAGTCTTCTTGCCATGAAACTTGACGTG
324 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
6120489 AAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATG
389 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
6120554 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
454 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
6120619 GGCGTAGTGCCCTCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
519 GACGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * **
6120684 TTCCCAGTATAAGATCGCACCAGACCGAGGATTGCTGCAGCAAGATCATCAGCACGCAGAGGGGG
582 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGG
* * * * *
6120749 AGCCGACCAATCCCCGG-TTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACG-TTGTTT
647 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
6120812 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCTTATGGAGTTCATTCCCAGTCG
712 CGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * ** * * *
6120877 AAGATCAGATCAGACTAAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
776 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * * *
6120942 TTTTCTTTGCCGAGGCACCATCGACGGAGCATCGTCGGAGAACCTGACCGACAGG-AATG
841 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC-GGCATTG
****
6121001 GGGTTTTTTCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
1 GGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6121066 GGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6121131 TGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
6121196 TGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGGTGAATTGTTTTGTTCATGTCAACAAAAATA
194 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
6121261 CAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAA
259 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAA
* ** * * *
6121326 CCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
324 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
6121391 AAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGTAGGAATATG
389 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
6121456 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCTGTCTCTCTGGCC
454 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
6121521 GACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
519 GACGTAGTGCCCGCCCGCCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** *
6121586 TTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAACATCGGTGGCACGCAGA-GGGC
582 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGG
* * * *
6121650 AGCCCGATCGATCCTCGACTTGCGCATCACGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
647 A-CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * **
6121715 TCGTGGTTGACTTAGG-ATACAGAGTTGATTCCCAGTTTAAGCATACGGAGTTCATTCCCAACCT
711 TCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
6121779 AAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGGTGTCGTA
776 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCA
** * **
6121844 TTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCGCTAGAGAACCTGACTGGCTACATTG
840 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
6121903 GGGTTCCGACGATCGGGGGGCCGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
1 GGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
6121968 GCCCTCATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTGAAGAGCATTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
6122033 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
6122098 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCGTACCAAAAAAAATAC
195 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
6122163 AAGGATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTTCAAAAAAATTTTAGAAAATCCCAAAC
260 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAAC
* * *
6122228 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTGACGTGA
325 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** *
6122293 AGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCACGTAGAAATATGA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * *
6122358 AGATGTGGCTAAACCCACCTACCACGCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGACCG
455 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
6122423 ACGTAGTGCCCGCCCGCCTGGCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
520 ACGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * * *
6122488 TCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCATGATCGGTAGCACGCAAAGGGGGA
583 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGA
** * * *
6122553 CCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCGGGCCGGCTGAGCGCCCGCACACTCGTTTT
648 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTT
** * *
6122618 ATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAA
712 CGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
6122683 AGATCGGACCGGACCGAGGGTTGCGGCACCACATGCTGGGCTCGGGCATGTGCTGGT-CTGCATT
777 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * ** * *
6122747 TTTCTTCATCGGGGCACCATCGTTGGAGCATCATCGAAGAACCTGAATGACGGTATTG
842 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * * *
6122805 GGGTTCCGGCGATCGGGAGGGCCAGGGGGTGTGCGCACATGATGTACGATGGATGCTAGTACTTG
1 GGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * * *
6122870 GCCCTTACATTCGCTCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCCTTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
6122935 GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
6123000 GGTC-CGAAAATTTTGTATACTTCGAGTTTTTAGCTAAATTTTTTTGTACATGCCAACAAAAATA
195 GGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
6123064 CAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTCC-TTCTGAAAAAACTCTAAAAAATCTCGA
259 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGA
* ** * * *
6123128 ACCGTAAAAAGTTTTTAAATTCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGT
323 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
6123193 GAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
388 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
6123258 GAAGATGTTCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTAGC
453 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
6123323 CGACGTATTGCCCGCCCGCCCATCCGCACACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
518 CGACGTAGTGCCCGCCCGCCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
6123388 ATTCCTAGTATAAGATTGGACCGGACCGAGGGTTGCGGCAGC---AT---------GCAGAGGGG
581 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGG
* * * * * *
6123441 GACCCGGTCGATCCCTGGCTTGTGCATCTCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTAGTT
646 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
6123506 TCGTGG--G---T-----T---GA---C-TT---AG-----GCATATGGAGTTCATTCCTAGTCT
711 TCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * ** ** * *
6123546 AAGATCGGACCAGACTGAGGGTTGCGATAGCACATGCTGGGCTCTAGAATGTGCTGGTGCCACAT
776 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* ** *
6123611 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTACGGAGAACCTGACCGGTGGCATTG
841 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * **
6123670 GGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGAAATGGGTGCTGGTACTTG
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
6123735 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * *
6123800 AAGATTTTGCAGGTATGCTACCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* **
6123865 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTACGCATGCCAACAAAAATAC
195 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
6123930 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAAC
260 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAAC
* ** ** * * * *
6123995 TGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGACTCGTCTTGCCATGAAAGTTCACATGA
325 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
6124060 AGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACACA-AAACTATG
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-TATG
* * * *
6124124 AAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTCGTC
454 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
6124189 GACGTAGTGCCCGCCCG-----G-CCACTCGTTTTGTCAGTTGGCTTAGGCATACGAAGTTCATT
519 GACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
6124248 CCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-AGGGGGTG
584 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGG-A
* * ** * * * *
6124312 CCCGACCGATCCGCGGCTTGCGCATCCCGCTTCTCTAGCCAGCTGAGCTCCCGTACGCTCGTTTC
648 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
6124377 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A----C---C--
713 GT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
6124426 --A----A----ACCGAGGTTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
777 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** * * ** * * *
6124481 TTTCCCCGTTGGGGCACCAACACCAGAGCATCGCCGGAGAACTTGACCGACGGCATTG
842 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
6124539 TGGCTCCGACGGTCGGGGGGTC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
6124603 CCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
6124668 AGATTTTACAGGTATGCTACCAGCAGCCATTAAAGTGTCTAAAATGGGGACACTTTATTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
6124733 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCGTGCCAAGAAAAATAGA
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
6124798 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCTCGAACC
261 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACC
* * **
6124863 GTAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
326 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
6124928 GGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAA
391 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * *
6124993 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCACACCCCGTCTCTCTGGCCGG
456 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
6125058 CGTAGTGCCCGCCCG--CCCGCCCGCTCGTTTTGTCGGTTGGCTTATGCATACAGAGTTCATTCC
521 CGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
6125121 CAGTCTAAGATCAGACCTGACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAGAGGGGGAACC
586 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCC
* * *
6125186 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGATGAGCGCCCGCACGCTCGTTTCATG
651 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-
*
6125251 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
715 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
6125316 TCGGACCAGACCGAGGGTTACGACAACACATGCTGGGCTCTGGCATGTGCTGGTGCCGTATTTTT
780 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** ** *
6125381 CTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGCCCCTGACCGGTGGCATTG
845 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** *
6125436 GGGTTCCGGCGATCGGGGGTGCCGGGGTGGGTGTGCGCACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGACGATCGGGGG-GCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
6125501 TGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
63 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
6125566 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAA
128 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
6125631 ATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAAT
193 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
6125696 ACAAGGATCACGTCTACCAATTTTAGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCTA
258 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGA
* *
6125761 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
323 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
6125826 GAAGGGTTAAGGGACCATTTTATGAATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATAT
388 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* *
6125891 GAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGC
453 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * ** * * * * * *
6125956 CGGCGTAGTGTCCATCCGCCTGCCCGACCGCTCATTTCATTGGTTGGCTTAGGCATACAGTAATT
518 CGACGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTT
* * * * * **
6126021 CATTTCCAGTCTAAAATTGGACCAGACCGAGGGTTGCGGCGGCAGGA-CTGGCAGCACATAGAGG
580 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATC-GGCAGCACGCAGAGG
* * *
6126085 GGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCG
644 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
6126150 TTTCGTTGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
709 TTTCG-TGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * **
6126215 TCGAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG-TTGGGCATGTGCTGGTGATG
773 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** *
6126279 CATTTTTCTTCGTC-AGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
838 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
6126340 GGGTTCTGACGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGTTACTT
1 GGGTTCCGACGATC--GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
6126405 GGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
6126470 TGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAA
* *
6126534 ATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAAT
193 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * ** * * *
6126599 ACAAGGATCTCGTCTACCAAGCTTGCAGCAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCGA
258 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGA
** *
6126664 ACCGCAAAATTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGT
323 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
6126729 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATAT
388 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * * * * * *
6126794 GAAGATATGCCTGAACCAACCTACCACCTTATCGATCAACGGCTTGGGCATACCGTCTCTCTGGT
453 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
6126859 AGGCGTAGTGCTCGCCCG--CCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GACGTTCA
518 CGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCA
* * * *
6126921 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGG
582 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGG
* * * * ** * * *
6126986 ACCCGACCTATCCTCGGCTTGTGCATCCCGCCCCTCTGGTTGGCTGATCACCCGAACGCTCGTTT
647 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
6127051 CGTGGGCTGACTTAGGCATACAGAGTTTATTCGCTGTCTAAGCATACGGATTTCATTCCCAGTCT
712 CGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
6127116 AAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
776 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * * * *
6127181 TTTTCTTCGTCGGGGCACCATTGCCAGAGCATCGCTGGAGAACCTAATCGACAGCATTG
841 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
** * ** *
6127240 GGGTTCCGGTGATCGGGGGGGCCGGGGTGGGTGTGCACACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGACGATC-GGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
6127305 TGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
63 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
6127370 TTAAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
128 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
6127435 ATGGTCACAAAATGTTGTACACTTCGAGTTCTTT-GATGAATTTTGTTGTGCATGGCAACAAAAA
193 ATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
6127499 TACAAGGATCTCGTCTACCAACTTTGCGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATCTCG
257 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* ** * *
6127564 AACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCATG
322 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
6127629 TGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATA
387 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
6127694 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTTTGG
452 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
6127759 CTGGCGTAGTGCCCGCCCG--CCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAGACGGAGTTCA
517 CCGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * ** * * * * * * *
6127822 TTCCTAGGCTAAGATTGGAACGGATTGAAGGTTGCGGTAGTAGGACCGGTAGCATGCAGAAGGGG
582 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAG-AGGGG
* * * * * * * * *
6127887 GACCCAATCGATCCCCGGCTTGTGCATCCCGCCCTTTTGGCTGGCTGAGCACCAGCACACTCATT
646 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
6127952 TCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCACAGTC
711 TCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** ** *
6128017 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTACGCTCGGGCATGTGCTGGTGATGCT
775 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
6128082 TTTTTCTTCATCGGGG---CA----C----CATCGCCGGAGAACCTGACCGGCGGCATTG
840 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * ** * * *
6128131 AGGTTTCGGTGATCGGGGGGGCTGTGGGGGTGTGCGCACATGATGTGCAATGGGAGCTGGTACTT
1 GGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
6128196 GGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTGACACCCCCTTAAAGGGCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
6128261 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
6128325 TGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATA
194 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * **
6128390 CAAGGATCACCTCTACCAAGTTTGGGGCCAAAACT-CTTTCTGAAAAAATTTTAAAAAATCTTGA
259 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGA
** * *
6128454 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACCTCACGT
323 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
6128519 GAAGGCTTTAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
388 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * *
6128584 GAAGATGTGCCTAAACCCACATACCACCCTATCGATCAACGGCTTGCGCATCTCGTCTCTCTGGC
453 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
6128649 CGCACGTAGT-CCACGCCCGCCCACCTGCCCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGT
518 CG-ACGTAGTGCC-CGCCCGCCC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * *
6128713 TCATTCCCACTCTAAGATCGGACCCGATTGAGGGTTACGGCAGCAAGATCGGCAGCACACAGAGG
579 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGG
* * ** *
6128778 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACATTCA
644 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
6128843 TTTCAAG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
709 TTTC--GTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
6128907 GTCTAAGATCGGACCGGACCGAGGGTTACGACAACACATGCTGGGCTCTGGTATGTGCTGGTGCC
772 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
6128972 GTATTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTG
837 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** *
6129035 GGGTTCCGACGATCGGGGGGGCCAGGGTGGGTGTGTGCACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGACGATC-GGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
6129100 TGGCCCTTATATTGGCCCCCTATCACTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
63 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
6129165 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACATTTTTTTCAA
128 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
6129230 ATGGTCAC--AATGTTGTACACTTCGAATTCTTAGATGAATTTTTTTGTGCATGGCAACAAAAAT
193 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
6129293 ACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATCTCGA
258 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGA
* ** * *
6129358 ACCACAAAAAGTTGTTTGAAAATCTGTGAAAAATA-AGAAACGAGTCCTCTTGCCATGAAACTTC
323 ACCGCAAAAAG-T-TTCAAAAATC-ATGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTC
* * * *
6129422 ACGTGAAGGCTTAAGGGACCATTGTTTG-ATTTACAAGCCATAAAAAATGGCATTGTCATGCAAA
384 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGA
* *
6129486 AATATG-AGAAGTGCCTAAATCCCACCTACCACCCCTATAGATCACCACGGCGTTGCGCATCCCG
448 AATATGAAGATGTGCCTAAA-CCCACCTACCA-CCCTATCGAT--CCACGGC-TTGCGCATCCCG
* * * *
6129550 TCTCT-TTGCCAAAGCGCTAG-G--CGCCCGCCCACCCGCCCGCTCGCGTTGTTGTCGGTTGGCC
508 TCTCTCTGGCC-GA-CG-TAGTGCCCGCCCG-CC-CCCGCCCGCT--CGTT-TCGTCGGTTGGCT
* * * * * * *
6129611 TAGGCTTACGGAAGTTCTTTCCCAGTCTAAGAACAGGACCCGGATCAAGGGTTGC-GTAGC-AGA
565 TAGGCATACGG-AGTTCATTCCCAGTCTAAGATC-GGA-CCAGACCGAGGGTTGCGGCAGCAAGA
* * ** * ** ** *
6129674 TCTGGCAGCACACA-AGAGGGGACCTTGAGTATTATCCTCTGATTTGCGCATTTTTCACCCCTCT
627 TC-GGCAGCACGCAGAG-GGGGACC-CGA-T-CGATCC-CCGGCTTGCGCA--TCCCGCCCCTCT
* * * * * *
6129738 GGCCGGCTGAGCACCAGCACGCTCGTTTCATGGTTTGAATTACGCATACGGAGTTCATTCCTAGT
684 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG-TTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
6129803 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGC
748 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** ** **
6129868 TGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCG
813 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCG
* *
6129933 GAGAACCTAACCAGCGGCATTG
878 GAGAACCTGACCGGCGGCATTG
* ** * *
6129955 GGGTTCTGGTGATC-----G--GGGGGGTTTACGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
6130013 CCCTTACATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
6130078 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
** * * *** ** ** ** *
6130143 GTCACAAAATCACGTATAC--CAAGTTTGGGGCCAAAACTCCTT-T-C--G--AA-AAAATTTTA
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA--ATA
** * ** ** * * * *
6130199 -AAAAATCCCAAACTGCAAAAAGTTT-----CAAAAATCAC--T---GAAAA-TATAAAACGCAG
259 CAAGGATCAC-GTCT--ACCAAGTTTGGGGCCAAAACTC-CTTTCAAAAAAATTTTAAAA---AA
* * * * * *** * * * * *
6130252 T-CCG-TCTTGCATGAAA-CTTC----A-CGTGAAGGCT---TAAGGGGAC--CATTG-TATG-A
317 TCCCGAAC-CGCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TTGCCATGAA
* * * * * ** * * * * *
6130302 ATTT----TCAAGCCATTAA---A--AATG---GCATTGGCACG-CAGAAATATGAAGTATGTGC
379 ACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG--GCAT-TGG
** ** ** ** *** * * * ** * ** ** * *
6130354 CTAAAACCCACCTACCACCCTAT--C-GATCCCACGCTTGCGCATTCCCGCCTCC-CTGG-TCGC
440 C--ACGCAGAAATATGAAGATGTGCCTAAACCCAC-CTACCACCCTATCG-ATCCAC-GGCTTGC
* * * * ** * *
6130414 GTAGGCCCG-C-C-C-GCCCGTCTC------------------CCC-CTCATTTTGTCGGTTGGC
500 GCA-TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
6130456 TTAGGCATACGGAGTTCAGTCCCAGTCTAAGATTTGACCAGACCGA-GATTGCGGC-GC---A-C
564 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATC
* * * * * * * *
6130515 --TAG-A-G--GA-----ACCC-AGTTGATCCTCGGCATACGCATCCCGCCCTTCTGGTCGACTG
629 GGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
6130568 A-CGCCCGCCACGCTCG-TT-ATGG-TGACAATAGCCATACAGA-TTCATTCCCAGTTTAAGCAA
693 AGCGCCCG-CACGCTCGTTTCGTGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGC-A
* * * ** * *
6130628 TA-GAAAG-TCATTCTCA-TCTAAGATC-AACCAAACCGA-GGTTACGGCAAGCACCATGCCGGG
755 TACG-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC-AGCA-CATGCTGGG
** *
6130688 CTCGGGCAACTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
817 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
**
6130753 ACCTGACCGATGGCATT-
882 ACCTGACCGGCGGCATTG
* **
6130770 GGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGG
1 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* ** *
6130835 CCCTTATATTGGCCCTCTATCCCTCATCAAACCTTAAAAACTCACACCCCCTTAAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
6130900 AAATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
6130965 GTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACTAAAATACA
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
6131030 AGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTCTGAAAAAATTTTAAAAAATCCCAAAC
261 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAAC
** * * * *
6131094 CGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTCATCTTGCCTTGAAGCTTCACGTGA
325 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
6131159 AGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * *
6131224 AGATGTACCTAACCCCACATACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCG
455 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
6131289 GCGTAGTGCCCGCCCG--CCTGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTA
520 ACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
6131352 CCAGTCTAAGACCGGACCGGACTGAGGGCTGCAGCAGTC-GGATTGGCAACACAG-AGAAGGTGA
585 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-CAAGATCGGCAGCAC-GCAGAGGGGGA
* * * *
6131415 CCCGATCGATCCCCGGCTTGCGCATCCCACCCCTTTGGACGGCTGAGCGCCCGTACGCTCGTTTC
648 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
6131480 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAGGCATACGGAGATCATTGCCAGTCTA
713 GT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
6131545 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATG
777 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
6131610 TTTCTTC-ACGAGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGTATTG
842 TTTCTTCGTCG-GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* *
6131668 GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTAGTTG
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
6131733 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT
* * * * **
6131798 TTAAATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATACGGACACTTTTTTCAAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
6131863 TGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATA
194 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
6131928 CAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCATTCAAAAAAATTTTAAAAAATCCTGAA
259 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAA
6131993 C
324 C
6131994 TTGCTATGAA
Statistics
Matches: 10113, Mismatches: 1441, Indels: 681
0.83 0.12 0.06
Matches are distributed among these distances:
814 8 0.00
815 21 0.00
816 88 0.01
817 27 0.00
818 14 0.00
819 4 0.00
820 7 0.00
821 24 0.00
822 175 0.02
823 6 0.00
824 18 0.00
825 4 0.00
826 1 0.00
827 10 0.00
828 1 0.00
829 4 0.00
830 8 0.00
831 3 0.00
832 7 0.00
833 1 0.00
834 5 0.00
835 8 0.00
836 7 0.00
837 6 0.00
839 2 0.00
840 7 0.00
842 7 0.00
843 12 0.00
844 5 0.00
845 21 0.00
846 25 0.00
847 3 0.00
849 6 0.00
850 8 0.00
852 1 0.00
853 8 0.00
854 12 0.00
855 15 0.00
856 10 0.00
857 78 0.01
858 14 0.00
860 2 0.00
864 73 0.01
865 517 0.05
866 7 0.00
867 467 0.05
868 18 0.00
869 162 0.02
870 5 0.00
871 182 0.02
872 17 0.00
873 14 0.00
874 11 0.00
875 72 0.01
876 16 0.00
877 6 0.00
878 7 0.00
879 3 0.00
880 2 0.00
881 6 0.00
882 5 0.00
883 3 0.00
884 2 0.00
885 5 0.00
886 6 0.00
887 8 0.00
888 13 0.00
889 300 0.03
890 220 0.02
891 53 0.01
892 47 0.00
893 200 0.02
894 83 0.01
895 18 0.00
896 32 0.00
897 203 0.02
898 238 0.02
899 192 0.02
900 247 0.02
901 1900 0.19
902 2062 0.20
903 633 0.06
904 225 0.02
905 215 0.02
906 268 0.03
907 103 0.01
908 10 0.00
909 14 0.00
910 186 0.02
911 25 0.00
912 31 0.00
913 26 0.00
914 26 0.00
915 13 0.00
916 1 0.00
917 4 0.00
918 9 0.00
919 2 0.00
920 207 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCC
GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
Found at i:6125292 original size:26 final size:26
Alignment explanation
Indices: 6125262--6125314 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6125252 GTTGACTTAG
*
6125262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6125288 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6125314 G
1 G
6125315 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6126205 original size:26 final size:26
Alignment explanation
Indices: 6126165--6126216 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6126155 TTGGTTGACT
*
6126165 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
6126191 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
6126217 GAAGATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:6126868 original size:903 final size:899
Alignment explanation
Indices: 6124391--6130153 Score: 7253
Period size: 901 Copynumber: 6.4 Consensus size: 899
6124381 GTTGACTTAG
* * * *
6124391 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCGAGGTTTGTGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * *
6124455 GCTCGGGCATGTGCTGGTGCCGCATTTTTCCCCGTTGGGGCACCAACACCAGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
6124520 AACTTGACCGACGGCATTGTGGCTCCGACGGTC-GGGGGGTC-GGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
6124583 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
6124648 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTATGCTACCAGCAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
6124713 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
6124778 TGCGTGCCAAGAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * **
6124843 AGTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
6124908 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
6124973 TTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCA
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
6125038 CACCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * *
6125103 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGTAGTAGGATTGGCA
715 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGACTGGCA
* * * * *
6125168 GCACGCAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGATGAGCGC
780 GCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
6125233 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
6125288 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAACACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
6125352 GCTCTGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
** ** * * **
6125417 CCCCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGGTGGGTGTGCGCACAAAATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
* *
6125482 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
6125547 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
6125612 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
6125677 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTAGGGCCAAAAATCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
6125742 AAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
6125807 TTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTTTATGAATTTACATGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
6125872 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
6125937 CGTATCCCGTCTCTCTGGCCGGCGTAGTGTCCATCCGCCTGCCCGACCGCTCATTTCATTGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
6126002 GCTTAGGCATACAGTAATTCATTTCCAGTCTAAAATTGGACCAGACCGAGGGTTGCGGCGGCAGG
709 GCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGG
* *
6126067 ACTGGCAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGC
773 ACTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * *
6126132 TGAGCGCCCGCACACTCGTTTCGTTGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
6126194 GCATACGAAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
6126259 -TTGGGCATGTGCTGGTGATGCATTTTTCTTCGTC-AGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
6126322 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
6126387 TGATGGGTGTTGTTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
6126452 ACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT-AAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-
* *
6126516 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * *
6126581 GTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGCTTGCAGCAAAAAGTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
6126646 AATTTTAAAAAATCCCGAACCGCAAAATTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTT
454 AATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
6126711 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * * *
6126776 ATTGGCATGCATAAATATGAAGATATGCCTGAACCAACCTACCACCTTATCGATCAACGGCTTGG
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
6126841 GCATACCGTCTCTCTGGTAGGCGTAGTGCTCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
*
6126906 GGCATAC-GACGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGA-TCG
714 GGCATACGGA-GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGACT-G
** * * * * * ** *
6126969 GCAGCACGTAGAGGGGGACCCGACCTATCCTCGGCTTGTGCATCCCGCCCCTCTGGTTGGCTGAT
777 GCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * * * * * *
6127034 CACCCGAACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTTATTCGCTGTCTAA
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
6127092 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
6127157 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * ** * **
6127222 ACCTAATCGACAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGTGGGTGTGCACACAAAATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGT
* *
6127287 GGGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
6127352 CACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
6127417 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTCTTT-GATGAATTTTGT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTT
* * * *
6127481 TGTGCATGGCAACAAAAATACAAGGATCTCGTCTACCAACTTTGCGGCCAAAACTCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
6127546 AAACTTTAAAAAATCTCGAACCACAAAAAGTTTT-GAAAATCATGAAAAATAGAAAACGAGCCGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAA-TTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
6127610 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
6127675 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
6127740 GCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * ** * * * *
6127805 TAGGCAGACGGAGTTCATTCCTAGGCTAAGATTGGAACGGATTGAAGGTTGCGGTAGTAGGACCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGACTG
* ** * * * * * *
6127870 GTAGCATGCAGAAGGGGGACCCAATCGATCCCCGGCTTGTGCATCCCGCCCTTTTGGCTGGCTGA
777 GCAGCACACAG-AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * * * *
6127935 GCACCAGCACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
6127994 GCATAC-AGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
** * *
6128058 GCTCGGGCATGTGCTGGTGATGCTTTTTTCTTCATCGGGG---CA----C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** *
6128112 AACCTGACCGGCGGCATTGAGGTTTCGGTGATCGGGGGGGCTGTGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * * * *
6128177 GCAATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTGA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
6128242 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
6128307 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
6128371 TTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** ** * *
6128436 AATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
6128501 TGCCATGAAACCTCACGTGAAGGCTTTAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
6128566 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
6128631 GCATCTCGTCTCTCTGGCCGCACGTAGT-CCACGCCCGCCCACCTGCCCGCTTGTTTCGTCGATT
649 GCATCCCGTCTCTCTGGCCG-GCGTAGTGCC-CGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTT
* * * ** * *
6128695 GGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGACCCGATTGAGGGTTACGGCAGCAAG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGG
*
6128760 A-TCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
773 ACT-GGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
** * *
6128824 CTGAGCGCCCGCACATTCATTTCAAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
6128887 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAACACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
6128951 GCTCTGGTATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATCACCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * **
6129016 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGTGGGTGTGTGCACAAAATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
* * *
6129081 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCACCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
6129146 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
6129211 ATGGGGACATTTTTTTCAAATGGTCAC--AATGTTGTACACTTCGAATTCTTAGATGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
6129274 TGTGCATGGCAACAAAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * ** *
6129339 AAACTTTAAAAAATCTCGAACCACAAAAAGTTGTTTGAAAATCTGTGAAAAATA-AGAAACGAGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAA-TT-TTCAAAAATC-ATGAAAAATAGA-AAACGAGT
* *
6129403 CCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTG-ATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAA
* * * * *
6129467 AATGGCATTGTCATGCAAAAATATG-AGAAGTGCCTAAATCCCACCTACCACCCCTATAGATCAC
578 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCA-CCCTATCGAT--C
* * * *
6129531 CACGGCGTTGCGCATCCCGTCTCT-TTGCCAAAGCGCTAGGCGCCCGCCCACCCGCCCGCTCGCG
639 CACGGC-TTGCGCATCCCGTCTCTCTGGCC--GGCG-TA-GTGCCCGCCCGCCCGCCCGCT--CG
* * * * ** * * *
6129595 TTGTTGTCGGTTGGCCTAGGCTTACGGAAGTTCTTTCCCAGTCTAAGAACAGGACCCGGATCAAG
697 TT-TCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAG-ATTGGA-CCAGACCGAG
* * ** * **
6129660 GGTTGC-GTAGCA-GATCTGGCAGCACACA-AGAGGGGACCTTGAGTATTATCCTCTGATTTGCG
758 GGTTGCGGCAGCAGGA-CTGGCAGCACACAGAG-GGGGACC-CGA-T-CGATCC-CCGGCTTGCG
** * * * * *
6129722 CATTTTTCACCCCTCTGGCCGGCTGAGCACCAGCACGCTCGTTTCATGGTTTGAATTACGCATAC
817 CA--TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
6129787 GGAGTTCATTCCTAGTCTAA
880 GGAGTTCATTCCCAGTCTAA
* * *
6129807 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
** ** *
6129871 GCTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * ** * *
6129936 AACCTAACC-AGCGGCATTGGGGTTCTGGTGATC------G--GGGGGGTTTACGCACATGATGT
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
6129992 GCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
6130057 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
6130122 TGGGGACACTTTTTTCAAATGGTCACAAAATC
324 TGGGGACACTTTTTTCAAATGGTCACAAAATC
6130154 ACGTATACCA
Statistics
Matches: 4221, Mismatches: 561, Indels: 153
0.86 0.11 0.03
Matches are distributed among these distances:
888 6 0.00
889 293 0.07
890 156 0.04
891 47 0.01
892 1 0.00
893 191 0.05
894 79 0.02
895 1 0.00
896 2 0.00
897 134 0.03
898 214 0.05
899 77 0.02
900 56 0.01
901 993 0.24
902 197 0.05
903 450 0.11
904 214 0.05
905 217 0.05
906 264 0.06
907 96 0.02
908 9 0.00
909 7 0.00
910 173 0.04
911 25 0.01
912 25 0.01
913 27 0.01
914 30 0.01
915 14 0.00
916 1 0.00
917 4 0.00
918 9 0.00
920 209 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGACTGGCAG
CACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:6127108 original size:26 final size:26
Alignment explanation
Indices: 6127066--6127118 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
6127056 GCTGACTTAG
* *
6127066 GCATACAGAGTTTATTCGCTGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
*
6127092 GCATACGGA-TTTCATTCCCAGTCTAA
1 GCATACAGAGTTT-ATTCCCAGTCTAA
6127118 G
1 G
6127119 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:6128890 original size:26 final size:26
Alignment explanation
Indices: 6128861--6128913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6128851 GTTGACTTAG
*
6128861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6128887 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6128913 G
1 G
6128914 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6129811 original size:26 final size:26
Alignment explanation
Indices: 6129781--6129833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6129771 TTTGAATTAC
* *
6129781 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6129807 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6129833 G
1 G
6129834 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6131529 original size:26 final size:26
Alignment explanation
Indices: 6131491--6131544 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
6131481 TGGGTTGACT
* *
6131491 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGATCATTCCCAGTC
*
6131517 TAGGCATACGGAGATCATTGCCAGTC
1 TAGGCATACGGAGATCATTCCCAGTC
6131543 TA
1 TA
6131545 AGATCGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGATCATTCCCAGTC
Found at i:6134136 original size:26 final size:26
Alignment explanation
Indices: 6134096--6134145 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6134086 TGACTTAGGT
*
6134096 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
* *
6134122 ATACGGAGTTTATTCCCAATCTAA
1 ATACAGAGTTCATTCCCAATCTAA
6134146 AATCAGACCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:6135035 original size:26 final size:26
Alignment explanation
Indices: 6134998--6135050 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
6134988 GTTGACTTAG
6134998 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6135024 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
6135050 G
1 G
6135051 ATCAGACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6135067 original size:904 final size:902
Alignment explanation
Indices: 6133222--6137460 Score: 5897
Period size: 904 Copynumber: 4.7 Consensus size: 902
6133212 GTTGACTTAG
* * ** * * **
6133222 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTACGATAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCCAACCGAGGGTTGCGGCAGCACATGCTAG
* * * *
6133286 GCTCGGGCATGTGCTGGTGCTGCA-----CAT-GTCGGGGCACCATCGCC-AGAGCATCACCGGA
65 GCTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGA-AGCATCACCGGA
* * * * *
6133344 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGTGGTCGGGGGGGTGTGCGCACGTGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATG
* * * *
6133409 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTAAAACCTCGAGAACTC
194 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
6133474 ACACACCCTTAAAGAGAATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATT-AATTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
6133538 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTATTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
6133603 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTTCGAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
6133668 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGT-AAAATATAGAAAACGAGTCCT
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA-ATAGAAAACGAGTCGT
6133732 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
6133797 GCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACTACCCTATCAATCCAGGGGCT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCT
* *
6133862 TGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTG--CGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
6133927 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGTAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAG
** * ** * * * *
6133992 GATTTGCAGTGCACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTGGTCGG
775 GATCGGCAGAGCATGGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
6134057 CTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
6134120 GCATACGGAGTTTATTCCCAATCTAAAATCAGACCCGACCGAGGGTTGTGGCAGCACATGGTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
* * * *
6134185 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCACCGGAGA
* * * * *
6134250 ACCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGTACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
6134315 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATGAAACCTCGAGAACTCAC
196 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
6134380 ACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTACTGCCAGTAGTCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
6134445 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * **
6134510 -TGCATACCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
6134574 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGACTCCTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
6134639 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGT
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
6134704 ATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCCACTACCCAATCGATCCAGGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
6134769 GCATCCCATCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCATAGTGCCTG--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
6134834 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGTAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGAT
* * * *
6134899 CGACAGAGAATGGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGGCTG
778 CGGCAGAGCATGGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
6134964 CGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
6135024 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * **
6135089 CTCGGGCATGCGCTGGTGCTGCATTTTTCTTCGCTGAGGCACAATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCACCGGAGA
* ** ** *
6135154 GCCTGACCGACGGCATTGGGGTTCCGGTGATCGGAAGGGCCAGGAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
6135219 TGATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCAC
196 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
6135284 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTTCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
6135349 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACAGTTCGAATTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
6135414 TGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
6135479 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATAGTGAAAGATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
6135544 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAACTTGCAAGCCATAAAAATGGCG
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
6135609 TTGGCATGGAGAAATATAAAGATGTGCCTAACCCCACCTACCACCCTATCGATCCATAGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
6135674 CATCCCGTCACTCTGGCCGGCGTAGTGCCT------GCCCG---AAT-GTTTCGTCGGTTGGCTT
651 CATCCCGTCTCTCTGGCCGGCATAGTGCCTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** *
6135729 AGGCATACGGAGTTCATTCACAGTCTAAGATC-GAACTAGACTGAGGGTTGCAGTTGCAAGATCG
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCAGCAGCAGGATCG
* * * * *
6135793 GCAGCACGCCA--GAGGTGGACCTGGCTGATCTCCGGCTTGCGCATCCCGCCACTCTGGCCGGCT
780 GCAG-A-G-CATGGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
6135856 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
6135917 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * **
6135982 CTCGGGCATGCGCTGGTGCTGCATTTTTCTTCGCTGAGGCACAATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCACCGGAGA
* ** ** *
6136047 GCCTGACCGACGGCATTGGGGTTCCGGTGATCGGAAGGGCCAGGAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
6136112 TGATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCAC
196 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
6136177 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTTCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
6136242 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
6136307 TGCATACCAAAAAAAATACAAGGATCATGT-TCAATAAGTTTGGGGCCAAAACTCCTCCCGAAAA
391 TGCATGCCAACAAAAATACAAGGATCATGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
6136371 AATTTTAAAAAATCCCAAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
6136436 CGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
6136501 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
6136566 GCATCCCGTCTCTCTAGTCGACATA------GAGCCCGCCAGCCCGCTCGTTTCATCGGTTGGCT
650 GCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
6136625 TAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGCAGTAGCAGGATTG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCG
* * *
6136690 GC--AGCATGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCACCCCGTCCCTCTGGCCGGCTG
780 GCAGAGCATG--GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
6136753 AGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCTCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
6136813 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCA-ACCGAGGGTTGCGGCAGCACATGCTAG
* * * *
6136877 GCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAG
65 GCTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCACCGGAG
* * *
6136931 AACCTGATCGACGGCATTGGGGTTCC-AGCGATCGGGGGGCCCAGGGGGGTGTGCACACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATG
* *
6136995 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTC
194 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
6137060 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
6137125 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * *
6137190 TATGCATGCCAACAAAAATACACGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
6137255 AAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
6137320 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTGAAAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
6137385 CATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
6137450 CGCATCCCGTC
649 CGCATCCCGTC
6137461 CCGTCCGCCC
Statistics
Matches: 3030, Mismatches: 276, Indels: 83
0.89 0.08 0.02
Matches are distributed among these distances:
885 494 0.16
886 1 0.00
888 1 0.00
890 1 0.00
891 1 0.00
892 76 0.03
893 751 0.25
894 2 0.00
895 4 0.00
896 202 0.07
897 72 0.02
898 73 0.02
899 1 0.00
903 7 0.00
904 1033 0.34
905 303 0.10
906 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCATAGTGCCTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGG
CAGAGCATGGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:6135928 original size:26 final size:26
Alignment explanation
Indices: 6135891--6135943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6135881 GTTGACTTAG
*
6135891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6135917 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6135943 G
1 G
6135944 ATCAGACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6136826 original size:26 final size:26
Alignment explanation
Indices: 6136787--6136846 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
6136777 GTTGACTTAG
*
6136787 GCATACGGACTTCATTCTCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
6136813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
6136839 G-AT-CGGAC
1 GCATACGGAC
6136847 CAGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:6137530 original size:26 final size:26
Alignment explanation
Indices: 6137494--6137546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6137484 GTTAGCCTAG
*
6137494 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6137520 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6137546 G
1 G
6137547 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6139286 original size:26 final size:26
Alignment explanation
Indices: 6139256--6139306 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6139246 TCACTTAGGC
*
6139256 ATACGGAGTTCATTCCTAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
6139282 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
6139307 ATGAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:6140182 original size:26 final size:26
Alignment explanation
Indices: 6140146--6140198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6140136 GTTGACTTAG
6140146 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
6140172 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
6140198 G
1 G
6140199 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:6140924 original size:27 final size:26
Alignment explanation
Indices: 6140886--6140939 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
6140876 GTTAGCCTAG
6140886 GCATACGGAGTTCATTCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
6140913 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6140939 G
1 G
6140940 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6142565 original size:26 final size:26
Alignment explanation
Indices: 6142515--6142566 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6142505 GTTGACTTAG
*
6142515 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
6142541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
6142567 AATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:6143192 original size:891 final size:881
Alignment explanation
Indices: 6141029--6143886 Score: 3796
Period size: 895 Copynumber: 3.2 Consensus size: 881
6141019 TCATCGTCGG
* *
6141029 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACGATTAAAGTGTCTGAAATGGGGACACTTTT
1 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
6141094 TGCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA-A
66 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
6141158 AAATATACAAGGATCACATTTACCAAGTTTGGGGCCAAAACTCCTCCCAAAAAAATTTTAAAAAA
131 AAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT-AAAAA
**
6141223 ATCCCAAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
194 ATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
6141288 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGC
259 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAT--
* * * * ** *
6141352 AGAAATATGAAGATATGCCAAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATAACGTC
322 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTT
* *
6141417 TCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
387 TCTCTGGCCGGCGTAGT----G-CC-CAC--TCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
** * * * * * *
6141482 ATTCCCAGTCTAAGATCAGACCACGCT-GTGGGTTCTGGTAGCAGGATCGGCA-ACACACAGAGG
444 ATTCCCAGTCTAAGATTGGACC-GGATCGAGGGTTC-GGTAGCAGGATTGACAGA-ACGCAGAGG
* * ** **
6141545 GGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCTAGCTGATGAC-CTGTACACTC
506 GGGACCC-GCCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA-G-CGC-CCACACTC
* *
6141609 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCA
567 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCA
** * *
6141674 GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCC
632 GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * * *
6141739 GTATTTTTCTTCACCGGGGCACCATC-GCAAGAGCATTGTCGAAGAACCTGACCGGCGGCATTGG
697 GTATTTTTCTTCACCGGGGCACCATCATCTGGAGCATCGCCGGAGAACCTGACC-GCGGCATTGG
*
6141803 GGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGG
761 GGTTCCGA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
6141868 CCCTTATTTTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
825 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
* * *
6141925 AGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTAAAATGGCGACACTTTT
1 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
* *
6141989 TACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGA
66 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
**
6142054 AAAATACAAGGATCACGTCTACTTAGTTTGGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
131 AAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
6142119 TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
195 TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
6142184 TCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-AATGCA
260 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAT--A
6142248 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTT
* * *
6142313 CTCTGGCCGGCGTAGTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTTCGAAT
388 CTCTGGCCGGCGTAGTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
*
6142378 CTAAGATTGGACCGGATCGAGGGTTACGGTAGCAGGATTGACAGAACGCAGAGGGGGACCCAGCT
453 CTAAGATTGGACCGGATCGAGGGTT-CGGTAGCAGGATTGACAGAACGCAGAGGGGGACCC-GCC
* * *
6142443 AATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCACACGTTCGTTTCGTGGGTT
516 AATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACAC--TCGTTTCGTGGGTT
* * *
6142508 GACTTAGGCATACGGAGTTCATTCCTACTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGG
579 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
** * * **
6142573 ACCGGGTCGAGGGTTGTGGTAGCACATGATGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
644 ACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC
*
6142638 ACCGGGGCACCATCATC-GGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCAGCGAT
709 ACCGGGGCACCATCATCTGGAGCATCGCCGGAGAACCTGACC-GCGGCATTGGGGTTCC-GAGAT
* *
6142702 CGGGGGGGCCGGGGGGTGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTCGCCCTTATAT
772 CGGGGGGGCC-GGGGG-G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
6142767 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAC
834 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
* *
6142815 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGACACTTTT
1 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
* **
6142880 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTGTGCACACCAAC
66 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC
* * *
6142945 AAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAA
130 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
* * * * *
6143010 TCCC-GACCAGCAAAAAGTTTCAAATATCATTAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
195 TCCCAAACC-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
6143074 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACATA
259 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-ATA
6143139 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
323 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT-T
** * ** * * *
6143204 CTCTTACCGACGTAGCGCCCGCCCGCCCGCCCGCACGCCCGTTCGTTTCATCAGTTGGCTTAAGC
387 -TC-T-----C-T-G-G-CCG---G--CG-TAG--TGCCCACTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
6143269 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTCCGGCAGTAGGATTGACAGC
433 ATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTT-CGGTAGCAGGATTGACAGA
* * *
6143334 ACGCAGAGGGGGACCCGACCAATCTCCGGCTTGCGCATCCCACCCCTCTAGTCGGCTGAGCGCCC
497 ACGCAGAGGGGGACCCG-CCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG-CC
*
6143399 GCACACTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTT
560 -CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTT
* *
6143464 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
624 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** *
6143529 TTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTTGGAGCATCACCGGAGAA
689 CTGGTGCCGTATTTTTCTTCACCGGGGCACCAT--------CATC--TGGAGCATCGCCGGAGAA
* * *
6143594 CCTGACCGACGGCATTGGGGTTTCGGAGATTGGGGGGGCCGGGGGG-GTGCGCACATGATGTGTG
744 CCTGACCG-CGGCATTGGGG-TTCCGAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
6143658 ATGGGTGCTAGTACTAGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGGGAACTCACAC
807 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
6143722 CCCCTTAAAA
872 CCCCTTAAAA
* * * *
6143732 AGCATTTGAGATTTTACAGGTTTGTTGCCTGTAGCAATTAAAGTTTTTGAAATGGGGACACTTTT
1 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
6143797 TTCACATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
66 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
6143862 AAAATAAAAGGATCACGTCTACCAA
131 AAAATACAAGGATCACGTCTACCAA
6143887 AAGTTTCAAA
Statistics
Matches: 1743, Mismatches: 164, Indels: 90
0.87 0.08 0.05
Matches are distributed among these distances:
885 5 0.00
886 4 0.00
887 312 0.18
888 9 0.01
889 3 0.00
890 118 0.07
891 285 0.16
892 45 0.03
893 4 0.00
894 1 0.00
895 318 0.18
896 58 0.03
899 1 0.00
900 1 0.00
901 1 0.00
902 1 0.00
903 3 0.00
906 1 0.00
908 2 0.00
909 1 0.00
910 1 0.00
911 274 0.16
912 2 0.00
913 5 0.00
916 40 0.02
917 144 0.08
918 43 0.02
919 4 0.00
920 1 0.00
921 6 0.00
922 47 0.03
923 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
CCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAATAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTC
TGGCCGGCGTAGTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
AGATTGGACCGGATCGAGGGTTCGGTAGCAGGATTGACAGAACGCAGAGGGGGACCCGCCAATCC
CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG
CACCATCATCTGGAGCATCGCCGGAGAACCTGACCGCGGCATTGGGGTTCCGAGATCGGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
Found at i:6143455 original size:26 final size:26
Alignment explanation
Indices: 6143426--6143478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6143416 GTTGACTTAG
*
6143426 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6143452 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6143478 G
1 G
6143479 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6144271 original size:26 final size:26
Alignment explanation
Indices: 6144242--6144294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6144232 GTTGACTTAG
* *
6144242 GCATATGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGACTAA
*
6144268 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCAATCCCAGACTAA
6144294 G
1 G
6144295 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGACTAA
Found at i:6145982 original size:25 final size:26
Alignment explanation
Indices: 6145943--6145994 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
6145933 GTTGACTTAG
6145943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6145969 GCATATGGA-TTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6145994 G
1 G
6145995 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6146166 original size:26 final size:26
Alignment explanation
Indices: 6146130--6146179 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6146120 GACTTAGGCA
*
6146130 TACGAAGTTCATTCATAGTCTAAGCG
1 TACGAAGTTCATTCACAGTCTAAGCG
* *
6146156 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCACAGTCTAAG
6146180 ATCGGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCACAGTCTAAGCG
Found at i:6147247 original size:437 final size:436
Alignment explanation
Indices: 6146432--6147270 Score: 1308
Period size: 437 Copynumber: 1.9 Consensus size: 436
6146422 AGAGCGTTTC
* * * * *
6146432 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCCATTTTTTTTTTAAA
1 AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACA-TCTTTTTTCAAA
*
6146497 TGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATAC
65 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATAC
* ** * * *
6146562 AAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAAAAAGTTAAAAAAATCTCGAAC
130 AAGGATCACATCTAAAAAGTTTGTGGCCAAAACTCCTTCCAAAAAAAGTTAAAAAAATCCCGAAC
* ** *
6146627 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGA
195 CCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
6146692 AGGATTAAGGGACCATTGTATGAATTTACAAGCCAAGAAAATGGCATTGGCACGCAGAAATATGA
260 AGGATTAAGGGACCATTGTATGAATTTACAAGCCAAGAAAATGGCATTGGCACGCAAAAATATGA
*
6146757 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTGGCCG
325 AGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCG
*
6146822 GCGTAGTGCCCGCCCGCCCTCCTGCCCGTTTATTTCGTCGGTTGGCG
390 ACGTAGTGCCCGCCCGCCCTCCTGCCCGTTTATTTCGTCGGTTGGCG
6146869 AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACA-CTTTTTTCAAAT
1 AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACATCTTTTTTCAAAT
**
6146933 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTTCATGGGAACAAAAATA
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATG--CATGCCAACAAAAATA
* *
6146997 CAAGGATCACATCTAAAAAAGTTTCG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
129 CAAGGATCACATCT-AAAAAGTTT-GTGGCCAAAACTCCTTCCAAAAAAAGTTAAAAAAATCCCG
*
6147061 AACCCTAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
192 AACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
6147126 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAAAAAT
257 TGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCA-AGAAAATGGCATTGGCACGCAAAAAT
* * * *
6147190 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTACGGCTTGCGTATCCCGTCTCTTTG
321 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTG
**
6147255 GTTGACGTAGTGCCCG
386 GCCGACGTAGTGCCCG
6147271 TCAGCCCGCC
Statistics
Matches: 365, Mismatches: 32, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
434 2 0.01
435 53 0.15
436 27 0.07
437 281 0.77
438 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (436 bp):
AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACATCTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACA
AGGATCACATCTAAAAAGTTTGTGGCCAAAACTCCTTCCAAAAAAAGTTAAAAAAATCCCGAACC
CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGATTAAGGGACCATTGTATGAATTTACAAGCCAAGAAAATGGCATTGGCACGCAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCCTCCTGCCCGTTTATTTCGTCGGTTGGCG
Found at i:6147509 original size:26 final size:26
Alignment explanation
Indices: 6147480--6147532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6147470 GTTGACTTAG
6147480 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
6147506 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
6147532 G
1 G
6147533 ATCCGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:6149295 original size:26 final size:26
Alignment explanation
Indices: 6149259--6149314 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6149249 TGGGTTGACT
*
6149259 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6149285 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6149311 TAAG
1 TAAG
6149315 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6150193 original size:26 final size:26
Alignment explanation
Indices: 6150163--6150214 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6150153 GGTTGACTTC
6150163 GGCATACGGAGTTCATTCCCAATCTA
1 GGCATACGGAGTTCATTCCCAATCTA
*
6150189 GGCATACGGAGTTCATTCCCAGTCTA
1 GGCATACGGAGTTCATTCCCAATCTA
6150215 AGATCAGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GGCATACGGAGTTCATTCCCAATCTA
Found at i:6150666 original size:24 final size:24
Alignment explanation
Indices: 6150639--6150684 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6150629 CTCCTTTCGA
* *
6150639 AAAAATTTTCAAAAATCCTGAACC
1 AAAAAGTTTCAAAAATCATGAACC
6150663 AAAAAGTTTCAAAAATCATGAA
1 AAAAAGTTTCAAAAATCATGAA
6150685 AAATAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (24 bp):
AAAAAGTTTCAAAAATCATGAACC
Found at i:6151100 original size:26 final size:26
Alignment explanation
Indices: 6151064--6151116 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6151054 GTTGACTTAG
*
6151064 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6151090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6151116 G
1 G
6151117 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6151130 original size:900 final size:901
Alignment explanation
Indices: 6146868--6152244 Score: 6541
Period size: 902 Copynumber: 6.0 Consensus size: 901
6146858 GTCGGTTGGC
* *
6146868 GAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * **
6146933 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGGGAACAAAAATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* ** *
6146998 AAGGATCACATCTAAAAAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
131 AAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
*
6147063 CCCTAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
195 CCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
6147128 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATG
260 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * * **
6147193 AAGATGTGCCTAAACCCACCTACCACCCTATCAATCTACGGCTTGCGTATCCCGTCTCTTTGGTT
325 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCC
*
6147258 GACGTAGTGCCCGTCAGCCCGCCCGCCGGTCCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGC
390 GACGTAGTG-CC--CA-CCCG--C-CC--TCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** **
6147323 ATACGGAGTTCATTCCTAGTGTAAGATCAGATAGGGCCAAGGGTTGCGGCAGCAGGATCGGCAGC
442 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
6147388 ACGCACAGGTGGACGCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGGCT
507 ACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
6147453 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTT
572 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** * * **
6147518 CATTCTCAGTCTAAGATCCGACTAGATCGAGGGTTGCAGCAGCA-ATTGCTGGGCTCAAGCATGT
637 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA-TGCTGGGCTCGGGCATGT
* * * ** *
6147582 GCTGGGGCCACATTTTTCTTCGTC-GAGGTACCACCGTCGGAGCATCGTCGGAGAACCTGACTGG
701 GCTGGTGCCACATTTTTCTTCGTCAG-GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* * * * *
6147646 CGGTATTGGGGTTCCGACGATCGGGGGGGCCGAGGCAGGAT-TGCACACTTGATGTACGATGGGT
765 CGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GG--GGGTGTGCGCACATGATGTGCGATGGGT
* ** *
6147710 GCTGGTACTTGGCCCTTATATTGGCTCTTTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTT
826 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-T
6147775 TAAAGAGCATTT
890 TAAAGAGCATTT
6147787 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
6147852 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGGCAACAAAAATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * **
6147917 AAGGATCACATCTACCAGGTTTTGGGCCAAAACT-CTTTAAGAAAAAATTTTAAAAAATCCCGAA
131 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCCGAA
* * *
6147981 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCACGAAACTTCACGTG
195 CCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
6148046 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGAAATATG
260 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
6148111 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTGTCTGGTC
325 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCC
* * * ** *
6148176 GACGTAATACCCA-CCGCCGGC-CCGCCCGCTCGTTTCATCATTTGGCTTAGGCATACGAAGTTC
390 GACGTAGTGCCCACCCGCC--CTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * *
6148239 TTTCCCAGTCTAAGATTGCATC-AGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTAAAGGG
453 ATTCCCAGTCTAAGATCGGACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
6148303 GGACTCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCATGCTCGT
517 GGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
*
6148368 TTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-
582 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
6148421 ----GAT----------TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAC
647 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* * ** * *
6148472 CTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTAGAGAACCTGATCGGCGGTATTGGGGT
712 ATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* *
6148537 TCCGGCGATCGGGGTGGCTGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
777 TCCGACGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
6148602 CTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
840 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
6148663 GAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAA
1 GAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6148727 TGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATA
65 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
** * * ** *
6148792 CATCGATCATGGCTACCAAGTTTGGGGTTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAA
130 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * * *
6148857 CCAC-AAAAAGTTTCAAAAATTGTCAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGT
195 CC-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ***
6148921 GAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACATAGAAATAT
259 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
6148986 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGC
324 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGC
* * * *
6149051 CGGCGTAATGCACACCCGCCCGTCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTC
389 CGACGTAGTGCCCACCCGCCC-TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** * *
6149116 ATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGACAGCAGGATCGGTTGTACACAGAGGG
453 ATTCCCAGTCTAAGATCGGACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * *
6149180 GGACTCGATCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGGTTGAGCGCCTGCACGCTCAT
517 GGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
* *
6149245 TTCGTGGGTTGACTTAAGTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
582 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
6149310 CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGC
647 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* * * ** * *
6149375 ATTTTTCTTCGCCGGGGCACCATCGTCGAAATATCGCCGGAGAACCTGACCGGCGGTATTGGGGT
712 ATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * **
6149440 TCTGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATATGTGATGGGTCCTCATACTTGGCCC
777 TCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
6149505 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCATTT
841 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
6149566 GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCGTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
6149631 GGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * * * *
6149696 AATGATCATGTCTACCAAGTTTGGGGCTAGAACTCCTTCCAAAAAAATTTTACAAAATCCAGAAC
131 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * *
6149761 CGC-AAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTG-CATAAAACTTCACGTG
196 C-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
6149824 TAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGGCATGCAGAAATAT
260 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGCAGAAATAT
*
6149889 GAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
324 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGC
* * * * * * *
6149953 TGATGTAGTG-CCAGCGCGCCCGCCCGCCCGCTCGTTTTGTCGGTTCGCTTAGGCATACGAAGTT
389 CGACGTAGTGCCCA-CCCGCCC-TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
6150017 CATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGCAAGATCGGCAGCATGCAGAGGG
452 CATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
6150082 GGACCCGACCGATCCCCAGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
517 GGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
* * * *
6150147 TTCATGGGTTGACTTCGGCATACGGAGTTCATTCCCAATCTAGGCATACGGAGTTCATTCCCAGT
582 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
6150212 CTAAGATCAGATCGGACCGAGGGTTGCAGTAGAACATGCTGGGCTCGGGCATGTGCTGGTGTCAC
647 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* * * * *
6150277 AATTCTCTTCGTCAGGGCACCATCG-CGAAGCATCACCGGAGAACCTGACCGACGGCATTAGGGT
712 ATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
6150341 TTCGGCGATCAGGGGGGCCGGGGCGGTGTGTGCACTTGATGTGTGATGGGTGCTGGTACTTGGCC
777 TCCGACGATC-GGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * * *
6150406 CTTATCTTGGCCCCCTATCCCTCATCATACCTCGATAACTCGCACCGCCTTAAAGAGCATTT
840 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
6150468 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
6150533 GGTCACAAAATCTTGTACAGTTAGAGTTTTTAGCTGAATTTTTTTATGCATACCAACCAAAATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
** * * * *
6150598 AAGGATCACGT-TACCAAGTTTGGGGTGAAAACTCCTTTCGAAAAAATTTTCAAAAATCCTGAA-
131 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* *
6150661 CC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGA
196 CCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
6150725 AGGCTTAAGGAACCATTCTTTGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
261 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
6150790 AGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTTTCTAGCCG
326 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCG
* * * *
6150855 GCGTAGTGCCCACCCACCCTCCAGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGAT
391 ACGTAGTGCCCACCCGCCCTCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
6150920 TCCCAGTCTAAGATCGGACCGAACCAAGAGTTGGGGCAGCAGGATCAGCAGTACGTAGAGGGGGA
455 TCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
** * ** * *
6150985 CTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTTGGCTGAGCGCCCACACGCTCGTTTC
520 CTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
*
6151050 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
585 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * **
6151115 AGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCGTATT
650 AGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
* * *
6151180 TTTCTTC-ACCGGAGCA-CATC-ACTGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
715 TTTCTTCGTCAGG-GCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* *** * * *
6151242 CCGGCGATCGGGGGGGTTAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCACT
778 CCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * * *
6151307 TATACTGGCCTCCTATCCCTCATCAAACCTTGAGAACCCTCACCCCCTTAAAGAGCATTT
842 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
6151367 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAAT
1 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
6151431 GGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAATATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * *
6151496 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCAAAC
131 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
6151561 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCATCTTGCCATGAAACTTCACGTGA
196 CCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
6151625 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATATAGAAATATGA
261 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * * * *
6151690 AGATGTGCCTAAACTCAGCTACCACCCTATCAATCCACAGCTTGCGTATCCCGTC--TCT--CTG
326 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCG
* * * * * ** *
6151751 --GTCG-G----CCTG--C-CCGTCCGTTTGTTTCGTCGGTTGGCTTAGTTATACGGTGTTCATT
391 ACGTAGTGCCCACCCGCCCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * * *
6151806 CCCAGTCTAAGATCGGACCGGACCTTGGGTTGTGGCAGCAAGG-TCAGTAACACGTAGAGGGGGA
456 CCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGGCAGC-AGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * *
6151870 CCCGACCGATCCTCGACTTGTGCATCCCGCCTCTCTGGCCGACTGATG-ACCCGCACACTCATTT
520 CTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCATTT
*
6151934 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTTTAAGCATACAGAGTTCATTCCCAGCCT
584 CGTGGGTTGACTTAGG----C--A--T-A---C--------G------GAGTTCATTCCCAGTCT
** *
6151999 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCACATGCTG
623 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * *** ** * *
6152064 GGCTCGAGCATGTCCTGGTGCTGTATTTTTCTTCGTCAGGGCACCATCCCCGGAGCATTACCGAA
688 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGA
* * * *
6152129 GAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGCTGCAGGGGTGTGCGCACATGATGT
753 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGT
** *
6152194 GCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCTTATCCC-CATCAAA
817 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
6152245 GTGTCTGAAA
Statistics
Matches: 3899, Mismatches: 470, Indels: 186
0.86 0.10 0.04
Matches are distributed among these distances:
875 1 0.00
876 370 0.09
877 204 0.05
878 81 0.02
879 109 0.03
880 3 0.00
881 1 0.00
884 1 0.00
885 152 0.04
886 6 0.00
887 3 0.00
888 1 0.00
889 6 0.00
891 1 0.00
893 5 0.00
894 5 0.00
895 1 0.00
896 2 0.00
898 82 0.02
899 264 0.07
900 575 0.15
901 130 0.03
902 717 0.18
903 379 0.10
904 2 0.00
905 179 0.05
907 1 0.00
909 3 0.00
910 1 0.00
911 127 0.03
912 109 0.03
913 4 0.00
915 2 0.00
917 6 0.00
918 228 0.06
919 138 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCG
ACGTAGTGCCCACCCGCCCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
TCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
TTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
Found at i:6151985 original size:26 final size:26
Alignment explanation
Indices: 6151949--6152027 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
6151939 GTTGACTTAG
* *
6151949 GCATACAGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6151975 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6152001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6152027 G
1 G
6152028 ATTGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6152834 original size:26 final size:26
Alignment explanation
Indices: 6152805--6152857 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6152795 GTTGACTTAG
6152805 GCATACGGAGTTCATTCCTC-GTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
6152831 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6152857 G
1 G
6152858 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6153721 original size:26 final size:26
Alignment explanation
Indices: 6153692--6153744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6153682 ATTGACTTAG
*
6153692 GCATACGTAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
6153718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
6153744 G
1 G
6153745 ATTCGATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:6154623 original size:26 final size:26
Alignment explanation
Indices: 6154593--6154645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6154583 GTTGACTTAG
*
6154593 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
*
6154619 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
6154645 G
1 G
6154646 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAATCTAA
Found at i:6154894 original size:901 final size:898
Alignment explanation
Indices: 6152237--6158056 Score: 8108
Period size: 901 Copynumber: 6.5 Consensus size: 898
6152227 CCCCTTATCC
* *
6152237 CCATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
6152302 TTTTACCTAAATTTTTTTGTGCATACCCAA-AAAAATACAAGGATCACATCTACCAATTTTGGGG
66 TTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
6152366 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAA
130 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAA
* * * *
6152431 AATAAAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGAATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** * *
6152496 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGTTGATGTGCCAAAACCCACGTACCACC
260 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
6152561 CTATCGATCCACGCCTTGCGCATCCCGTTTCTCTGGCCAGCTTAGTGCCCGTCCGCCTGCCCGCT
325 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCT
* * * *
6152626 CATTTCGTCGGTTAGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACC-GAACTGAGG
390 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGG
* * * * * * * ** * * *
6152690 GTTATGCCAGCAGTATCGGCAGCACGTAAAGGGGGACTTGGTTGATCCTCGACTTGCGCATCTCG
454 GTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCG
* *
6152755 CCCCTCTGGCCGGCTGAGCGCCCGTACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
519 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
6152820 TCCTC-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGACA
584 TCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
*
6152884 GCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T-----
648 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * **
6152941 C--C-CCGTAGAACCTGATCGGTGGCATTGGTGTTCC-AGTGAT-TAGGGGCTCGGGGGGGTGTG
713 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGC-C-GGGGGGTGTG
* * * *
6153001 CGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCACTATCCTTCATCAAAC
775 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
6153066 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
840 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
6153125 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
6153190 TTTTAGCTGAATTTCTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * * *
6153255 CAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACTGTAAAAAGTTTTGAAAATCGTGAGAA
131 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
* * * *
6153320 ATAGAAAACAAGCCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
6153385 ACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
6153449 TATTGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGACC-GCT
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTGCT
* * * * *
6153513 CGTTTCATCGGTTGGCTTACGCATACTGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
390 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * ***
6153578 TTGTGGTAGTAGGATCGACAGCATGCAGAGGGGGACCCTATCGATCCCCGGCTTGCGCATCCCGC
455 TTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGC
* * * * ** *
6153643 CCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTTGAGCATTGACTTAGGCATACGTAGTTCATT
520 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
6153708 CCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTC-GA-TGAGACCGATGGTTGTGGCA
585 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACTG-GACCGAGGGTTGCGGCA
* * * *
6153771 ACACATACTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTCG-CTGGGGCACCATCGTCGGA
648 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGA
* * * * ** *
6153835 GCATCACCGGAGAACCGGACCGGCGGCATTAGGGTTCCAACGATCAAAGGGGCC-GGGGGTGTTC
712 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC
* * *
6153899 ACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACC
776 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
6153964 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAG
841 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
6154022 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
6154087 TTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGCC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
6154152 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
131 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
*
6154217 ATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
6154282 ACAAGCCATGAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
6154347 TATCGATCCACGGTTTGCGCACCCCGTCTCTCTGGTCGACGTAGTGCCGCCCGCCCGCCCGCCTG
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCGCCCGCCTG
* * *
6154412 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATTAGACCAAACTGAG
388 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * *
6154477 GGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCC
453 GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCC
* * *
6154542 GCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCA
518 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
6154607 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGACA
583 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
* ** * *
6154672 GCACATGCTGGGCTCGGGAATGTGCTGGTGCTGCATTTTTGTTCATCGGGGCACCATCGTCGGAG
648 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * *
6154737 CATCGCTGAAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGGTGCG
713 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
* * * *
6154802 CACATGATATGGGATGGGTGCTGGTACTTGGGCTTTATATTGGCCCCCTATCCCTCATCAAA-CT
777 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * ** *
6154866 CAAGAACTCACACCCCCTTAAAGAGCATTGGAGATGCTACAGGTTTGCTGCAAGTAG
842 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
6154923 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
6154988 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGTGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** * *
6155053 CAAAAATCCTTTCGAAAAAATTTTAAAAAATCTTGGACCGCAAAAAGTTTCAAAAATCGTGAAAA
131 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
* * * *
6155118 GTAAAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
6155183 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGGGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
6155248 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTC
* * ** * *
6155313 ATTCCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGA-TCGAGGG
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGG
* * * * * *
6155377 TTGCGGCCA-CAGGATCGATAGCACGTAGAGGGGGACCCGGCCGAACCCTGGCTTGCGCATCCCG
455 TTGTGG-CAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCG
* * * * *
6155441 CCCTTCTGGCCGACTGAGTGCCCGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
519 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** *
6155506 TCCCAGTCTAAGCATTTGGAGTTCATTCCCAGTCTAAGAGCGGACTGGACCGAGGGTTGCGGCAG
584 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
* * *
6155571 CACATGCTGGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCATTGGGGCACCATCGTCGGAGC
649 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * * * * *
6155636 ATTGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCGCGGGGTTATGTGC
714 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGC
* * *
6155701 AGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTT
778 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
6155766 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAG
843 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
6155822 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
6155887 TTTTAGTTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
6155952 CAAAA-TACCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAA
131 CAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAA
* *
6156016 AATAGAAAACGAGTCGTCTTACCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
6156081 TTCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
260 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
6156146 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCACC
325 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCC-GC
* * * *
6156211 CGTCCGCTCGTTCCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGG
385 C-T--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * * *
6156276 ACTGAGGGTTACGGCCGTAGGATCGACAGCACGCAGAAGGGGACTCGACCGATCCCTGGCTTGCG
447 ACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCG
* * *
6156341 -ATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
512 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * **
6156405 AGTTCATTCCCTGTCTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGAATGAGGGTT
577 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
* * * * * *
6156470 -CGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTATCCGTCGTGGCATCATCG
642 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
* * * * * *
6156534 CCGGAGCAACGCCGGAGAACCTGAACGACGGCATTGGGGTTCCGGCGATCGGGGGTCCGGGGGGT
707 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
* * *
6156599 GT-CGCGCATGATGTGCGATTGGCT-CTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
772 GTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
6156662 AAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
836 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
**
6156725 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTATAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * ***
6156790 TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGTTCC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * *
6156855 CAAAAATCCTTTTGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG-AAA
131 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
6156919 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATT
* *
6156984 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACC
260 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
6157049 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCC-CCTCCT
325 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCT
* **
6157113 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
390 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
** * * * * * *
6157178 TTGTGGTGGCAGGATCGATAGCACGTAAAGGGGGACTCGGCCGATCCCCGGCTTGTGTATCTCGC
455 TTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGC
* *
6157243 CCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
520 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
6157308 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGTGTTGCGGCAAC
585 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGC
* * * * * * *
6157373 ACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGAA
650 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
6157438 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGCTGGGGGGTATGCGCAC
715 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
* ** *
6157502 ATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTTGA
780 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
6157567 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAG
845 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
6157621 CCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * ** *
6157686 TTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACTAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
6157751 CAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTTTGAAAACCTTGAAAA
131 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
* * *
6157816 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATCT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
6157881 ACAAGCCATAAAAAAGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * **
6157946 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCATCCCGCCCGTCC-GCT
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTGCT
* *
6158010 CGTTCCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
390 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
6158057 CATACGAAGT
Statistics
Matches: 4385, Mismatches: 492, Indels: 101
0.88 0.10 0.02
Matches are distributed among these distances:
886 4 0.00
887 361 0.08
888 245 0.06
890 1 0.00
894 105 0.02
895 134 0.03
896 511 0.12
897 477 0.11
898 523 0.12
899 411 0.09
900 11 0.00
901 734 0.17
902 115 0.03
903 415 0.09
904 13 0.00
905 106 0.02
906 114 0.03
907 104 0.02
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
Found at i:6156433 original size:26 final size:26
Alignment explanation
Indices: 6156397--6156447 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6156387 GTTGACTTAG
* *
6156397 GCATATGGAGTTCATTCCCTGTCTAC
1 GCATACGGAGTTCATTCCCAGTCTAC
6156423 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
6156448 AGATCAGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAC
Found at i:6157329 original size:26 final size:26
Alignment explanation
Indices: 6157292--6157344 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6157282 GTTGACTTAG
*
6157292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6157318 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6157344 G
1 G
6157345 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6158059 original size:26 final size:26
Alignment explanation
Indices: 6158030--6158082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6158020 GTTGGCTTAG
*
6158030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6158056 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6158082 G
1 G
6158083 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6158685 original size:738 final size:740
Alignment explanation
Indices: 6157281--6158798 Score: 2790
Period size: 738 Copynumber: 2.1 Consensus size: 740
6157271 TCGTTTCGTG
*
6157281 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
*
6157346 TCGGACTGGACTGAGTGTTGCGGCAACACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTT
66 TCGGACTGGACTGAGGGTTGCGGCAACACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTT
6157411 CTTCGCCGAGGCACCATCGTCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
131 CTTCGCCGAGGCACCATCGTCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
6157476 GATCGGGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTC
196 GATCGGGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTC
6157541 ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
261 ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
6157606 GTTTGCGGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
326 GTTTGCGGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
6157671 TTGTACACTTCGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTC
391 TTGTACACTTCGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTC
*
6157736 TACTAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTT
456 TACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTT
* *
6157801 TGAAAACCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
521 TGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
*
6157866 CCATTGTATGAATCTACAAGCCATAAAAAAGGAATTGGCACGTAGAAATATGAAGATGTGCCTAA
586 CCATTGTATGAATCTACAAGCCATAAAAAAGGAATTGGCACGCAGAAATATGAAGATGTGCCTAA
*
6157931 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTG-GCA
651 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCA
* *
6157995 TCCCGCCCG-TCC-GCTCGTTCCATC
716 -CCCACCCGCACCTGCTCGTTCCATC
6158019 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
*
6158084 TCGGACTGGACTGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTT
66 TCGGACTGGACTGAGGGTTGCGGCAACACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTT
* * *
6158149 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
131 CTTCGCCGAGGCACCATCGTCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
6158214 GATTGGGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTC
196 GATCGGGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTC
6158279 ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
261 ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
6158344 GTTTGTGGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
326 GTTTGCGGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
6158409 TTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTC
391 TTGTACACTTCGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTC
*
6158474 TACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGTAAAAAGTTT
456 TACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTT
*
6158539 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
521 TGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
6158604 CCATTGTATGAATCTACAAGCCATAAAAAAGGAATTGGCACGCAGAAATATGAAGATGTGCCTAA
586 CCATTGTATGAATCTACAAGCCATAAAAAAGGAATTGGCACGCAGAAATATGAAGATGTGCCTAA
*
6158669 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCA
651 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCA
*
6158734 CCCACCCGCCCACCTGCTCGTTTCATC
716 CCCACCCG--CACCTGCTCGTTCCATC
* *
6158761 GGTTGGCTTATGCATACGGAGTTCATTCCCAATCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
6158799 ATCAGATCAA
Statistics
Matches: 753, Mismatches: 22, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
738 702 0.93
739 2 0.00
741 2 0.00
742 47 0.06
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (740 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCGGACTGGACTGAGGGTTGCGGCAACACATACTGGGCTCGGGCATTTACTGGTGCCGCATTTTT
CTTCGCCGAGGCACCATCGTCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
GATCGGGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTC
ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCGGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTC
TACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTT
TGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
CCATTGTATGAATCTACAAGCCATAAAAAAGGAATTGGCACGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCA
CCCACCCGCACCTGCTCGTTCCATC
Found at i:6158961 original size:26 final size:26
Alignment explanation
Indices: 6158931--6158983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6158921 GTTGACATAG
*
6158931 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6158957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6158983 G
1 G
6158984 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6159700 original size:26 final size:26
Alignment explanation
Indices: 6159671--6159723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6159661 GTTGGCTTAG
*
6159671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6159697 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6159723 G
1 G
6159724 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6161010 original size:739 final size:738
Alignment explanation
Indices: 6158928--6161177 Score: 3962
Period size: 738 Copynumber: 3.0 Consensus size: 738
6158918 TGTGTTGACA
* *
6158928 TAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTG
* * * * ** * *
6158993 GACCGAGGGTTACGACAGCACAGGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGCAG
66 GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCG
* ** *
6159058 GGGCACCATCGCCGGAGCATCCCCGGAGAACCTGACC-AGTGGCATTGGGGTTTCGACGATCGGG
131 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-TGGCATTGGGGTTCCGACGATC--G
* * * * * **
6159122 GGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGTTGCTGGTACCTGGCCCTTATATTGGCCCC
193 GGGGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCC
* *
6159187 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTG
258 CTATCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTG
6159252 CTGGAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTA
323 CTGGAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTA
*
6159317 CACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
388 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
*
6159382 AGTTTCGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAA
453 AGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAA
6159447 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
518 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
6159512 GTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
583 GTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
6159577 CCTACCACCCTATCGATGCACAGCTTTCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCCGCCCGC
648 CCTACCACCCTATCGATGCACAGCTTCCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCCACCCGC
6159642 CCGCCCGCTCGTTCCGTCGGTTGGCT
713 CCGCCCGCTCGTTCCGTCGGTTGGCT
6159668 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTG
*
6159733 GACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATTTACTGGTGCCGCATTTTTCTTCGCCG
66 GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCG
* * *
6159798 GGGCACCATCGTCGGAGCATCGTCGCAAAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
131 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGG
6159863 GCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTA
196 GCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTA
6159928 TCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
261 TCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
6159993 GAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
326 GAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
6160058 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
391 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
6160123 TTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATC
456 TTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATC
6160188 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
521 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
6160253 TGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
586 TGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
6160318 ACCACCCTATCGATGCACAGCTTCCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCTACCCGCCCG
651 ACCACCCTATCGATGCACAGCTTCCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCCACCCGCCCG
6160383 CCCGCTCGTTCCGTCGGTTGGCT
716 CCCGCTCGTTCCGTCGGTTGGCT
* * * *
6160406 TAGGCATACGGAGTTCATTCCCATTCTAAGCATACGAAGTTCATTCACAGTCTTAGATCGGACTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTG
*
6160471 GACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCG
66 GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCG
6160536 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGGTTCCGACGATCGGG
131 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATT-GGGGTTCCGACGATCGGG
6160601 GGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCT
195 GGCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCT
6160666 ATCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCT
260 ATCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCT
6160731 GGAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
325 GGAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
* *
6160796 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCATGTCTACCAAG
390 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
*
6160861 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAAT
455 TTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAAT
6160926 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
520 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
6160991 ATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
585 ATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
6161056 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACTC
650 TACCACCCTATCGATGCACAGCTTCCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCCA--C-C-C
* * * *
6161121 GCCCACCTGCTCGTTTCATCGGTTGGCT
711 GCCCGCCCGCTCGTTCCGTCGGTTGGCT
* *
6161149 TAGGCGTACGGAGTTCATTCCCAATCTAA
1 TAGGCATACGGAGTTCATTCCCAGTCTAA
6161178 TATCGGATCG
Statistics
Matches: 1448, Mismatches: 56, Indels: 9
0.96 0.04 0.01
Matches are distributed among these distances:
738 700 0.48
739 522 0.36
740 171 0.12
741 2 0.00
742 1 0.00
743 52 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (738 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTG
GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTACTGGTGCCGCATTTTTCTTCGCCG
GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGG
GCTGGGGGGTATGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTA
TCCCTCATCAAACCTCGATAACTCACACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
GAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
TTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATGCACAGCTTCCGCATCCCGTCTCTCTGCCCGGCGTAGTGGCCACCCGCCCG
CCCGCTCGTTCCGTCGGTTGGCT
Found at i:6164787 original size:21 final size:21
Alignment explanation
Indices: 6164758--6164833 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 21
6164748 TGAAAATGAG
*
6164758 AAAGAGAAAAAAAATG-ATGAAA
1 AAAG-GAAAAAAAA-GAAAGAAA
6164780 AAAGGAAAAAAAAGAAAGAAA
1 AAAGGAAAAAAAAGAAAGAAA
*
6164801 AAA-GAAAAAGAAAGAAATGAGA
1 AAAGGAAAAA-AAAGAAA-GAAA
*
6164823 AAATGAAAAAA
1 AAAGGAAAAAA
6164834 GGAGATTCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.15
21 24 0.50
22 11 0.23
23 6 0.12
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (21 bp):
AAAGGAAAAAAAAGAAAGAAA
Found at i:6164796 original size:17 final size:18
Alignment explanation
Indices: 6164756--6164817 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 18
6164746 GATGAAAATG
6164756 AGAAAGAGAAAAAAAATGATGA
1 AGAAAG-GAAAAAAAA-GA--A
*
6164778 AAAAAGGAAAAAAAAGAA
1 AGAAAGGAAAAAAAAGAA
6164796 AGAAA--AAAGAAAAAGAA
1 AGAAAGGAAA-AAAAAGAA
6164813 AGAAA
1 AGAAA
6164818 TGAGAAAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
16 3 0.08
17 13 0.35
18 5 0.14
20 2 0.05
21 9 0.24
22 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (18 bp):
AGAAAGGAAAAAAAAGAA
Found at i:6164800 original size:13 final size:13
Alignment explanation
Indices: 6164778--6164834 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
6164768 AAAATGATGA
6164778 AAAAAGGAAAAAA-
1 AAAAA-GAAAAAAG
6164791 AAGAAAGAAAAAAG
1 AA-AAAGAAAAAAG
6164805 AAAAAGAAAGAAATG
1 AAAAAGAAA-AAA-G
6164820 AGAAAATGAAAAAAG
1 A-AAAA-GAAAAAAG
6164835 GAGATTCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
13 16 0.42
14 8 0.21
15 3 0.08
16 7 0.18
17 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:6166154 original size:41 final size:41
Alignment explanation
Indices: 6166078--6166375 Score: 438
Period size: 41 Copynumber: 7.1 Consensus size: 41
6166068 ATGATTGTAA
*
6166078 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
6166120 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
6166161 AGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
6166203 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
6166244 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
6166285 A-GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
6166325 AGGAGCAGTTTAAATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTT--AT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
6166370 AGGAGC
1 AGGAGC
6166376 TTTGGTAAAA
Statistics
Matches: 238, Mismatches: 10, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
40 35 0.15
41 116 0.49
42 56 0.24
43 4 0.02
45 27 0.11
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:6166217 original size:83 final size:82
Alignment explanation
Indices: 6166078--6166336 Score: 441
Period size: 83 Copynumber: 3.1 Consensus size: 82
6166068 ATGATTGTAA
6166078 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTT-CAAAGT
6166143 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
*
6166161 AGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAGT
6166226 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
6166244 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGA-GAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAGT
6166307 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
*
6166325 AGGAGCAGTTTA
1 AGGAGCAATTTA
6166337 AATGTTTCTC
Statistics
Matches: 169, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
81 49 0.29
82 23 0.14
83 93 0.55
84 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:6166388 original size:1 final size:1
Alignment explanation
Indices: 6166382--6166430 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
6166372 GAGCTTTGGT
* * * * *
6166382 AAAAAAAAAAAAAAAACAAAAAACAAAAAAACACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6166431 TGACAATGTT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6166419 original size:26 final size:24
Alignment explanation
Indices: 6166383--6166430 Score: 78
Period size: 26 Copynumber: 1.9 Consensus size: 24
6166373 AGCTTTGGTA
6166383 AAAAAAAAAAAAAAACAAAAAACA
1 AAAAAAAAAAAAAAACAAAAAACA
6166407 AAAAAACACAAAAAAAACAAAAAA
1 AAAAAA-A-AAAAAAAACAAAAAA
6166431 TGACAATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
26 15 0.68
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAAAAAACAAAAAACA
Found at i:6166436 original size:10 final size:9
Alignment explanation
Indices: 6166382--6166430 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
6166372 GAGCTTTGGT
6166382 AAAAAAAA-
1 AAAAAAAAC
6166390 AAAAAAAAC
1 AAAAAAAAC
6166399 --AAAAAAC
1 AAAAAAAAC
6166406 AAAAAAACAC
1 AAAAAAA-AC
6166416 AAAAAAAAC
1 AAAAAAAAC
6166425 AAAAAA
1 AAAAAA
6166431 TGACAATGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.19
8 8 0.22
9 13 0.35
10 9 0.24
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:6166436 original size:19 final size:19
Alignment explanation
Indices: 6166382--6166430 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
6166372 GAGCTTTGGT
6166382 AAAAAAAA-AAAAAAA-AC
1 AAAAAAAACAAAAAAACAC
6166399 --AAAAAACAAAAAAACAC
1 AAAAAAAACAAAAAAACAC
6166416 AAAAAAAACAAAAAA
1 AAAAAAAACAAAAAA
6166431 TGACAATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 6 0.21
16 7 0.25
17 2 0.07
19 13 0.46
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAAACAAAAAAACAC
Found at i:6166678 original size:4 final size:4
Alignment explanation
Indices: 6166664--6166694 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
6166654 ATATGTATAT
*
6166664 TTTA CTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
6166695 TCTGTTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:6166726 original size:21 final size:19
Alignment explanation
Indices: 6166649--6166784 Score: 55
Period size: 20 Copynumber: 6.6 Consensus size: 19
6166639 ATGATTATTA
* * *
6166649 TTATTATATGTATATTTTAC
1 TTATTTTATTTATA-TTTAT
6166669 TTA-TTTATTTATTTATTTAT
1 TTATTTTATTTA--TATTTAT
*
6166689 TTATTTTCTGTTAATATTTAT
1 TTATTTTAT-TT-ATATTTAT
*
6166710 ATGTATTTTATTTATA-TAAT
1 -T-TATTTTATTTATATTTAT
*
6166730 TCTATATTTATTATATATTATAA
1 T-TAT-TTTATT-TATATT-TAT
6166753 TTA-TTTA-TTATTATTATTAT
1 TTATTTTATTTA-TA-T-TTAT
6166773 TTATTATTATTT
1 TTATT-TTATTT
6166785 TCTTGTAATA
Statistics
Matches: 89, Mismatches: 10, Indels: 31
0.68 0.08 0.24
Matches are distributed among these distances:
18 2 0.02
19 13 0.15
20 29 0.33
21 22 0.25
22 11 0.12
23 12 0.13
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TTATTTTATTTATATTTAT
Found at i:6166751 original size:16 final size:16
Alignment explanation
Indices: 6166670--6166783 Score: 58
Period size: 16 Copynumber: 6.9 Consensus size: 16
6166660 ATATTTTACT
*
6166670 TATTTATTTATTTATT-
1 TATTTA-TTATATATTA
* * *
6166686 TATTTATTTTCTGTTAA
1 TATTTATTATATATT-A
* *
6166703 TATTTA-TATGTATTT
1 TATTTATTATATATTA
6166718 TATTTA-TATA-ATTCTA
1 TATTTATTATATA-T-TA
6166734 TATTTATTATATATTA
1 TATTTATTATATATTA
*
6166750 TAATTATTTATTATTATTA
1 TATTTA-TTA-TA-TATTA
6166769 TTATTTATTAT-TATT
1 -TATTTATTATATATT
6166784 TTCTTGTAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
14 1 0.01
15 16 0.21
16 29 0.38
17 14 0.18
18 4 0.05
19 8 0.10
20 5 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TATTTATTATATATTA
Found at i:6166765 original size:3 final size:3
Alignment explanation
Indices: 6166737--6166783 Score: 58
Period size: 3 Copynumber: 14.7 Consensus size: 3
6166727 AATTCTATAT
*
6166737 TTA TTA TATA TTA TAA TTA TTTA TTA TTA TTA TTA TTTA TTA TTA TT
1 TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TT
6166784 TTCTTGTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 30 0.77
4 9 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:6167730 original size:17 final size:16
Alignment explanation
Indices: 6167696--6167736 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
6167686 TTAGATTAGG
*
6167696 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
6167712 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
6167729 TTTATTTA
1 TTTATTTA
6167737 TTTTTTACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:6167742 original size:17 final size:17
Alignment explanation
Indices: 6167722--6167769 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
6167712 TTTATCTTAA
6167722 TTTTATTTTTATTTATT
1 TTTTATTTTTATTTATT
* * *
6167739 TTTTACTGTTCTTTATT
1 TTTTATTTTTATTTATT
6167756 TTTCTATTTTTATT
1 TTT-TATTTTTATT
6167770 ATTCTATTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 17 0.71
18 7 0.29
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:6167769 original size:14 final size:14
Alignment explanation
Indices: 6167750--6167779 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6167740 TTTACTGTTC
*
6167750 TTTATTTTTCTATT
1 TTTATTATTCTATT
6167764 TTTATTATTCTATT
1 TTTATTATTCTATT
6167778 TT
1 TT
6167780 CTTTAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTATTCTATT
Found at i:6167952 original size:60 final size:59
Alignment explanation
Indices: 6167787--6168082 Score: 418
Period size: 59 Copynumber: 5.0 Consensus size: 59
6167777 TTTCTTTAAA
*
6167787 TAAAAATAAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
***
6167848 TAAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
6167907 TGGAAATAAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
6167967 TAAAAATAAA-TTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
6168025 TAAAAATAAATTTTCAGAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
6168083 CTACACAAGA
Statistics
Matches: 212, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
58 55 0.26
59 97 0.46
60 53 0.25
61 7 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.34
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:6167964 original size:28 final size:28
Alignment explanation
Indices: 6167873--6167964 Score: 71
Period size: 28 Copynumber: 3.1 Consensus size: 28
6167863 AAAAAAAGGG
6167873 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
** * **
6167901 TTTCCTTGGAAATAAAAGTTTCAAA--AAAAAT
1 TTT--TT-G-AGGAAAAG-TTGAAAGTATCAAT
6167932 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
6167961 TTTT
1 TTTT
6167965 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
27 5 0.11
28 13 0.28
29 5 0.11
30 4 0.09
31 5 0.11
32 9 0.20
33 5 0.11
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:6168711 original size:26 final size:26
Alignment explanation
Indices: 6168675--6168727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6168665 CCGATCCGAT
*
6168675 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6168701 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6168727 C
1 C
6168728 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6170925 original size:904 final size:904
Alignment explanation
Indices: 6168579--6175968 Score: 9600
Period size: 904 Copynumber: 8.2 Consensus size: 904
6168569 AGGTTCTTAA
* * * *
6168579 CGATGCTCTGACGATGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCCCGATCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
6168644 TGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATT
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
6168709 GGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * ** * **
6168774 GGGGCGAGATGCACAAGCCGTGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCATGCTGCTA
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
* * * * * * * * * *
6168839 CAACCTTCGGTCTGGTCTAATCTTAGATTAGGAATGAACTCTGTATGCCAAAGCCAATCGACAAA
261 CAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ** * * *
6168904 ATGAGCGGGCGGGCAGGCATGCAGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGCCGTGGA
326 ACGAACGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
6168969 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATG
390 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
*
6169034 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCGTT
455 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * * *
6169099 TTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTAAAAAATTTTTCGGAAGGA
520 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* ** *
6169164 GTTTTGGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
585 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAG
*
6169229 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
650 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
6169294 TAATGGCTACTAGCAGCAAACCCGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
715 TAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* **
6169359 GTTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
780 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
6169424 CACACCACC-CTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG---T----
845 CACACC-CCTC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * ** *
6169478 ---T-CTCCGACGATGGTGCCCCGGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
6169539 TGTGCTGCCGAAACCCTCGGTCTGATCTGATCTTAGACT-GG---G-A------ATG---A-AC-
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
6169588 -----T----TC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
6169642 GGGGCGGGATGCCCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
* *
6169707 CAACCCTCAGTCGGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAA
261 CAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
6169772 ACGAACGGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGA
326 ACGAACGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** * * *
6169837 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAAAGCAAATTTTATG
390 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
* * * *
6169902 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCATGAATTTTAATGGCAAGACGACTCGTT
455 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** * *
6169967 TTCTATTTTTCATGATTTCTGAAAGTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGATGGA
520 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
6170032 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCAAAAAAAAATTCAG
585 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
6170097 CCAAAAACTCGAAGTCTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
650 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
6170162 TAATAGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAG
715 TAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
6170227 GTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
780 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
6170292 CACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCTGGATCTCCGG
845 CACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* *
6170352 CAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
6170417 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTGGACTGAGAATGAACTCCGTATGCTTAGACT
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
6170482 GGGAATGCACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * * * *
6170547 GGGGTGGGATGCACAAGCTGGGGATCGACCGGGTCTCCCTCTATGTGCTGCCAATCCAGTTGCCG
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
* * * * * * *
6170612 CAACCGTCAGTCCGATCGGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAATCGACGAA
261 CAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** * * * **
6170677 ACGAATGGGCGACGGGCATGCAGGCACTACGCCGACCAGAGAGACATGATGCGCAAGCCGTGGAT
326 ACGAACGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
6170742 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
391 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
*
6170807 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCGTTT
456 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * * * *
6170872 TCTATTTTTCACAATTTTTGAAACTTTTTACGATTTGGGATTTTTGAAAATTTTTTTGGAAGGAC
521 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
* * * * *
6170937 TTTTGGCTCCGAACGTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
586 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGC
*
6171002 TAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
651 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
6171067 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTTAGTTCTCGAGG
716 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* ** * *
6171132 TTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGACGTGCGC
781 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
6171197 ACACCACC-CTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGG---T----
846 ACACC-CCTC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
6171250 ---T-CTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
6171311 TGTGCTGTCGAAACCCTCGGTCCGATCCGATCGTAGACTGGGAATCG-ACTCCGTATGCTTAGAC
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAAT-GAACTCCGTATGCTTAGAC
* * * *
6171375 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCCAG
130 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *
6171440 AGGGGCGAGATGCGCAAGCTGGGGATCGATCAGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCC
195 AGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* ** * *
6171505 ACAACCCTCAGTCGGGTCCAATCTTCGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
260 GCAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
6171570 AACAAACGGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
325 AACGAACGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** * *
6171635 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCCAAAGCAATTTTTA
389 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCAT-GCCAATGCCATTTTTA
* *
6171700 TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCG
453 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
6171765 TTTTCTATTTTTCATGATTTTCGAAAGTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGACG
518 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
6171829 GATTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCAGAAAAACATTC
583 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTC
* * * * * *
6171894 AGCCAAAAACTCGAAGTCTACAACATTTTGTGATCGTTTGAAAAAAGTGTCCCAATTTCAGACAC
648 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
6171959 TTTAATAGCTATTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGCG
713 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
6172024 AGGTTTGATAAGTGATAGGGGACCATTATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTG
778 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * *
6172089 CGCACAACCCCTCCTAGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
843 CGCAC-ACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* *
6172152 CAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
6172217 TGTGCTGTCGTAACCCTCGGTCTGTTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACT
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
6172282 GGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * *
6172347 GGGGTGGGATGCGCAAGC-CGGGATCGGTGGGGTCCCCCTCTATGTGCT-CCTGATCCTACTACC
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACC-GATCCTGCTGCC
* * *
6172410 ACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
260 GCAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * ** * * * *
6172475 AATG-A----------GTGGGCGGGCACTACACCGGCCAGAGAGATGGGATACGCAAGCCATGTA
325 AACGAACGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
6172529 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATG
390 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
* *
6172594 GCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTT
455 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
6172659 TTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTAC-GAAGG
520 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-CGGAAGG
** * *
6172723 CGTTTTGGCCCCAAACATGGTAGACGTGATCTTTGTATTTTTT-TTGGCATGCACAAAAAAATTC
584 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAAATTC
* * *
6172787 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTATCCCCATTTCAGACAC
648 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
6172852 TTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCA
713 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
6172917 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
778 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
6172981 CGCACA--CC-CCCGGCCCCCCCGATCGCCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGA
843 CGCACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * **
6173040 CGATGCTCCGACGATGGTGCCCCGATGAAGTAAAATGCAACACCAGCACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
6173105 TGTGCTGCTGTAACTCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
6173170 GGGAATGAACTATGTATGCCTAAGTCAACCTACGAAACGGGCGTGTGGGCACTCAGCCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * *
6173235 GGGGCGGGATGCGTAAGCCGGGGATTGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACTG
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
* * * * *
6173300 TAACCCTCAGGTTGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGA
261 CAACCCTCA-GTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * ** * * *
6173364 AACGAGCGGGGGGGCGTACGGGCGGGCACTACGTCGACCAGAGACATGGGATGCGCAAGCCGTGG
325 AACGAAC-GGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** *** * *
6173429 ATCGATAGGGTGGTAGGTGGGTTTATACACATCTTCATATTTCCACGTGCCAATGCCAATTTTAT
389 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
* *
6173494 GGCCTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGT
454 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
6173559 TTTCTATTTTTCATGATTTTGGAAAGTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGG
519 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
6173624 CA-TTTTGACCCCAAACTTGGTAGACGTTATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATT
584 -ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAAATT
* *
6173687 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACA
647 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
6173752 CTTTAA-AGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCT
712 CTTTAATA-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
**
6173816 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGATCCAAGTACCAGCACCCATCGCACATCATG
776 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
6173881 TGCGCACAACCC-CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
841 TGCGCACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
** *
6173943 CGATGCTCCG-CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
6174007 TGTGCTGTCGTAACGCTTGGCCCGGTCCTATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
66 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
6174072 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCATGCGTGCGCTCAGCCGGCCAGA
131 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * * * * ** * *
6174137 GGGGCAGGATG-GCAAGCCAGGGATCGGTCGAGTCCCCCGCTGCATGCCACCGATATTACTACCG
196 GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
** * * * * * *
6174201 CAACCCTTGGTCTGGTTTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCAAACCGACAAA
261 CAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
6174266 ACGAGCAGGCGGGCGGGCGGGCGGGCGGGAACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCG
326 ACGA--A--CGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
6174331 AGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
386 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
* * * * * *
6174396 TGTGACTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
451 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
6174461 CGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTCGG
516 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGG
* *
6174526 AAGGATTTTTGGTCCCAAATTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAA
580 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAA
*
6174590 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
644 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
6174655 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
709 ACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
6174720 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
774 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** *
6174785 TGTACGCACACCCCT---AG-CCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCTG
839 TGTGCGCACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
6174846 G
904 G
** ** * *
6174847 CGATGCTCCGGTGATGGTGCCCCCGGTGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCCAG
1 CGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCCAG
* * * * *
6174912 CTATGTGCTGCAAGCAACCCTCGGTCTGGTCCGATCTCTAGACTGGGAATGAACTCCATATGGTT
64 C-ATGTGCTGC-CGTAACCCTCGGTCTGATCCGATCT-TAGACTGGGAATGAACTCCGTATGCTT
*
6174977 AGACTAGGAATGAACTCATGTATGCCTAAGTCAACCCAC-AAACGAGCGTCGCGGGCCGCTCAGT
126 AGACTGGGAATGAACTC-TGTATGCCTAAGTCAACCCACGAAACGAGCGT-GCGGG-CGCTCAG-
** * * * * * ** *
6175041 CAAGCCAGACGGGCGAGATGCGCAAG-TAGGGATTG-GCTGGG-CCCCCTCTGCAAGCTACCAAT
187 CCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATC-GGGTCCCCCTCTGCGTGCTACCGAT
***
6175103 CCTGCTGCCGCCAACCCTCAGTCTCATCTGCATCTTAGACTGGGAATGCAAC-CACGTATGCCTA
251 CCTGCTGCCG-CAACCCTCAGTCGGGTCTG-ATCTTAGACTGGGAATG-AACTC-CGTATGCCTA
* * * * *
6175167 AGCCAACCAATGAAA-GAGCGGGCGGGGCGAGCGGG-GGGCACTACGGTCGGCCAGAGATACGGG
312 AGCCAACCGACGAAACGAACGGGC--GGCGGGCGGGCGGGCACTAC-GTCGGCCAGAGAGACGGG
* * * *
6175230 ATGCCCAAGCCAT-GATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTTATATTTTTGCATG-
374 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGC
* *
6175293 CAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCAT
439 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * **
6175358 GGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GGGTTCAAGATTTTTTAA
504 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
6175422 AATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCGT
569 AATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCAT
* * *
6175487 GCACAAAAAAGTTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
634 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
6175552 CCCATTTCAGACACTTTAAT-GCTTATTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGG
699 CCCATTTCAGACACTTTAATAGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
6175616 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCC
763 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
6175681 ATCGCACATCATGTGCGCACACACCCT---GGCCCCCCCGATCGCTGGAACCCCAATGCTGCCGG
828 ATCGCACATCATGTGCGCACAC-CCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
*
6175743 TCAGGTTCTCCGA
892 TCAGGTTCTCCGG
* *
6175756 CGATGCTCCGACGATGGTGCCTC-AGCGAAGAAAAATGCCGCACCAGCACATGCCC-AGGCCCAG
1 CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAG
* * * * * *
6175819 TATGTGCTGCCGAAACCCTCGATCTGATCTGATCTTGGACTGGGAATGAACTCCATATGCTTAGA
64 CATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
6175884 ATGGGAATGAACTCTGTATCCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCCA
129 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
*
6175949 GAGGGGTGGGATGCGCAAGC
194 GAGGGGCGGGATGCGCAAGC
6175969 CGAAAATTGG
Statistics
Matches: 5684, Mismatches: 688, Indels: 235
0.86 0.10 0.04
Matches are distributed among these distances:
867 40 0.01
868 602 0.11
869 32 0.01
870 3 0.00
874 1 0.00
877 1 0.00
878 88 0.02
879 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 3 0.00
888 236 0.04
889 94 0.02
890 8 0.00
891 2 0.00
892 162 0.03
893 284 0.05
894 296 0.05
895 466 0.08
896 118 0.02
898 1 0.00
899 1 0.00
900 5 0.00
901 521 0.09
902 228 0.04
903 80 0.01
904 605 0.11
905 508 0.09
906 507 0.09
907 267 0.05
908 60 0.01
909 175 0.03
910 110 0.02
911 59 0.01
912 31 0.01
913 38 0.01
914 23 0.00
915 24 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (904 bp):
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
CAACCCTCAGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAACGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
Found at i:6171373 original size:26 final size:26
Alignment explanation
Indices: 6171344--6171394 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6171334 GATCCGATCG
6171344 TAGACTGGGAATCG-ACTCCGTATGCT
1 TAGACTGGGAAT-GAACTCCGTATGCT
6171370 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
6171395 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:6172284 original size:26 final size:26
Alignment explanation
Indices: 6172248--6172300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6172238 CTGTTCTGAT
*
6172248 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6172274 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6172300 C
1 C
6172301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6173165 original size:26 final size:26
Alignment explanation
Indices: 6173136--6173188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6173126 CTGATCCGAT
*
6173136 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
6173162 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
6173188 C
1 C
6173189 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:6174074 original size:26 final size:26
Alignment explanation
Indices: 6174038--6174090 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6174028 CCGGTCCTAT
6174038 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
6174064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
6174090 C
1 C
6174091 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:6177997 original size:26 final size:26
Alignment explanation
Indices: 6177961--6178010 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
6177951 CTGATTCGAT
6177961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6177987 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
6178011 ATGCCTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6178884 original size:26 final size:26
Alignment explanation
Indices: 6178855--6178907 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
6178845 TCGGTCCGAT
* *
6178855 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGCAATGAACTCCGTATG
* *
6178881 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAAACTGGCAATGAACTCCGTATG
6178907 C
1 C
6178908 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGCAATGAACTCCGTATG
Found at i:6178898 original size:894 final size:887
Alignment explanation
Indices: 6176079--6179074 Score: 3790
Period size: 903 Copynumber: 3.3 Consensus size: 887
6176069 TGATGCTCCA
* * ** * *
6176079 ACGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCGTATGCCCGGGCCCAGCATGTGCTACCG
1 ACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
6176144 TAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAAT
66 CAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAAC
* * * *
6176209 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGGGGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * *
6176274 GCGCAAGCCGGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCTGCAACCCTCA
196 GCGCAAGCC-GGGGATCGGCCGGGTCCCCCTCTGCATGCTGCTAATCCTACTGCTGCAACCCTCA
* *
6176339 GTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATAAGCAGG
260 GTCTGGTCTGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGAAATAAGCAGG
*
6176404 CGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGG
324 CGGGCGGGCGGGCGGGCACTACGACGGC-AGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGG
* ** * *
6176469 TGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTCATGGCATGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAA
*
6176534 TTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
**
6176599 TCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
518 TCACGATTTTTGAAACTTTTT-ACGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * *
6176664 CCAAATTTGGTAGACACGATCCTTGAATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACT
582 CCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
6176729 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTA
647 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
* * *
6176794 TTGGCAGTAAACCTGTAAAATCTCAAACGCTCCTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
712 CTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
*
6176859 GGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCATCACACATCAT-TGCGCACACCCCCC
776 GGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
6176923 TAG-ACCCTCCGATTGTTGAAACCCTAATGTCGTC-GTCAGGTTCTCTGACG
841 -GGCCCCCT-CGATTGTCGGAACCCTAATGTCGCCGGTCAGGTTCT-T--CG
** * *
6176973 ATGCTCCGGTGATGGTGCCCCGACAAAG-AAAATGTGGCACCAGCACATGCTCG-GCCCAGCATG
1 A-----C---GATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
6177036 TGCTGCCGTAACCCTCAGTTCAATCGGATCTTAGACTGGGAAATGAACTCTGCATGCTTATG-CT
58 TGCTGCCGCAACCCTCAGTTCGATCCGATCTTAGACTGGG-AATGAACTCCGCATGCTTA-GACT
* * * **
6177100 GGGAATGAACTCCGTATGCCCTAAGTCAAACCA-TAACAGGAGCGTGCGGGCGCTCAGCCCACCA
121 GGGAATGAACTCCGTATG-CCTAAGTCAACCCACGAA-ACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
6177164 GAGGGGTGGGATGCGC-AGCCCGGGGCTCGGCCCGGGTCCCCCTCTGCATGCTG-TCGATCCTAT
184 GAGGGGCGGGATGCGCAAG-CCGGGGATCGG-CCGGGTCCCCCTCTGCATGCTGCT-AATCCTA-
* * * * *
6177227 TTCCTGCAACCCTCAATCTGGTCTAATCTTAGACTGGTAATG-ACTCCATGTGCCTAAGCCAACC
245 CTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGG-AATGAACTCCATATGCCTAAGCCAACC
* * * * * *
6177291 GACAGAAATAAGTAGACGGGCGGGCGGGCGGTCACTATGCCAGCCAGAGAGACGGGATGCGCAAG
309 GAC-GAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGAC-GGCAGAGAGACGGGATGCGCAAG
* * * *
6177356 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACCTGCCAATGCCAT
372 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
6177421 TTTAATGGCTTGCAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
437 TTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
* * *
6177486 ACTCGTTTTCTGTTTTTCACGATTTTTAAAACTTTTTACCGTTCGAGATTTTTTAAAATTTTTTC
502 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGTTCGGGATTTTTTAAAATTTTTTC
* * * *
6177551 GGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
566 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAA
* *
6177616 AATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
631 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
* *
6177681 GACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
696 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGT
* * * * *
6177746 TCTGGAGGTTTGATGAGAGATAGGGGGCCAATATAAGAGCCAAGTAGTACCACCCATCGCACATC
760 TCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATC
* * * * * *
6177811 ATGTGCGGACACCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGTCGCCGGTCAAGTTCTCCG
824 ATGTGCGCACACCCCCCGGCCCCCTCGATTGTCGGAACCCTAATGTCGCCGGTCAGGTTCTTCG
* * * *
6177875 GCGATGGTGCCCC-ATCGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGTC
1 ACGATGGTGCCCCGAT-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
6177939 GCAACCCTC-GGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
65 GCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGA
* ** *
6178003 ACTCCGTAATGCCTAAGTTAACCCACGAAACGAGCGTGCGGCGGCGCTCAGTTGGCCAGAGGAGC
129 ACTCCGT-ATGCCTAAGTCAACCCACGAAACGAGCGTGC-G-GGCGCTCAGCCGGCCAGAGGGGC
* * ** * *
6178068 GGGATGTGCAAG-CTGGGATCGGTTGGGTCCCCCTCCGCATGCTGCTAATGCTACTGCTGCAA-C
191 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCTAATCCTACTGCTGCAACC
* *
6178131 CT-ATGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAAGCCAACCGACGAAAT
256 CTCA--GTCTGGTCTGATCTTAGACT-GGAATGAACTCCATATGCCT-AAGCCAACCGACGAAAT
* * * * *
6178195 GAGCGGGCGGGCGGGCGGGCGGGGCACTACGACGGTCGGAGAGACAGGACGCGCAAGTCGTGGAT
317 AAGCAGGCGGGCGGGCGGGC-GGGCACTACGACGG-CAGAGAGACGGGATGCGCAAGTCGTGGAT
* *
6178260 CGATAGGGTGGTAGGTGGCTTTA-GCACATCTTCACATTTCTGCATGCCAATGCCATTTT-ATGG
380 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGG
* *
6178323 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTT
445 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* *
6178388 TCTATTTTTGACGATTTTTGAAAC-TTTTACGATTCGGGATTTTTCT-AAATTTTTTCAGAAGGG
510 TCTATTTTTCACGATTTTTGAAACTTTTTACG-TTCGGGATTTTT-TAAAATTTTTTCAGAAGGA
* * * * * * * * *
6178451 GATTTGGACCCAAACTCGATAGACATGATCCCTGTCTTTTTGTTGGCATGCAAAAAAAAATTCAT
573 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAG
** * *
6178516 CTTCAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTT
638 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
**
6178581 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAG
703 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-AAGGGGGTGTGAGTTCTAGAG
*
6178646 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCG
767 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCG
* *
6178711 CACACCCCACCGGCCCCCTCGATTGTCGGATCCCCAATGTCGCCGGTCAGGTTCTTCG
831 CACACCCC-CCGGCCCCCTCGATTGTCGGAACCCTAATGTCGCCGGTCAGGTTCTTCG
* * * **
6178769 ACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCTA
1 ACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * * *
6178834 CAACCTTC-GATTCGGTCCGATCTTAAACTGGGAATGACCTCCGTATGCTTAGATTGGCAATGAA
66 CAACCCTCAG-TTCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAA
* **
6178898 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGTTAGAGGGG-GGGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** ** * * * * *
6178962 TGCGCAAGCTGGGGATCGGCCAAGTCCCTTTCTGCGTGCTG-TCGATCCTGCT-ATCGTAACCCT
195 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCT-AATCCTACTGCT-GCAACCCT
* * * * *
6179025 CAGTCCGGT-TCAATCTTATACCGGGAATGAACTCCGTATGCCTAAGCCAA
258 CAGTCTGGTCT-GATCTTAGA-CTGGAATGAACTCCATATGCCTAAGCCAA
6179075 ACTTGGTAGA
Statistics
Matches: 1819, Mismatches: 227, Indels: 116
0.84 0.10 0.05
Matches are distributed among these distances:
890 21 0.01
891 82 0.05
892 10 0.01
893 304 0.17
894 286 0.16
895 175 0.10
896 123 0.07
897 26 0.01
898 2 0.00
899 1 0.00
900 46 0.03
901 69 0.04
902 125 0.07
903 484 0.27
904 40 0.02
905 25 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
ACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCTAATCCTACTGCTGCAACCCTCAG
TCTGGTCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATAAGCAGGCG
GGCGGGCGGGCGGGCACTACGACGGCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
CGATTTTTGAAACTTTTTACGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCTCGATTGTCGGAACCCTAATGTCGCCGGTCAGGTTCTTCG
Found at i:6179496 original size:26 final size:26
Alignment explanation
Indices: 6179467--6179516 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
6179457 CCGGTTCGAT
6179467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6179493 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
6179517 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6180383 original size:26 final size:26
Alignment explanation
Indices: 6180354--6180405 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6180344 TGGTCCGATA
* *
6180354 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
6180380 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
6180406 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:6180886 original size:889 final size:886
Alignment explanation
Indices: 6179071--6181281 Score: 2859
Period size: 886 Copynumber: 2.5 Consensus size: 886
6179061 TATGCCTAAG
* *
6179071 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAA-CTAAAAAC
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT-AAGCTAAAAAC
* * *
6179135 TCGAAGTGTAAAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
65 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCT
6179200 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-A
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATA
*
6179264 GAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGGACCCATCGCACATCATGTACGCATAC-C
195 -AGGGATAGGGGGCCAATATAA-GG---------AGGACCCATCGCACATCATGT--GCGTACAC
* * * * * * * *
6179328 CTCCTCGGGCCCCCAGATCGTCGGAACCCTAATGCCGTTGGTCAGGTTCTCAGGTGATGGT--G-
247 C-CC-CAGCCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA
* * * *
6179390 C-C----CCAG-TGAAGAAAAATACGACACCAGTACATGCCCGAGCCTAGCATGTGTTGCCGCAA
310 CACGGTGCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA
* * * *
6179449 CCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC
375 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCC
* * *
6179514 GTAAGCCTAAGTCAACCCATAAAATGTGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCG
440 GTAAGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCG
* * * *
6179579 CAAGCCAGGGATAGCTCGGGTCTACCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAATCC
505 CAAGCCAGGGATAGCTCGGATCCACCTCTACATGCTGCCGATCCTACTACCACAACCCTCAATCC
*
6179644 TGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGG
570 TGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGG
*
6179709 CGGGCGGGTACTACATCGGCAAGAAAGACGGGATGCGCAAGCCATGGATCGATAGAGTGATAGGT
635 CGGGCGGGCACTACATCGGCAAGAAAGACGGGATGCGCAAGCCATGGATCGATAGAGTGATAGGT
*
6179774 GTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
700 GGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
6179839 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTTCATGAT
764 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTCACGAC
* ** *
6179904 TTTTAAAACTTTTTACGGTTCGGGATTTTTTTTAATTTTTTTGGAAAGATTTTTGGCC
829 CTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCC
* *
6179962 CCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAAGT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACT
*
6180027 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACGCTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
* * *
6180092 CTGGCAGCAAACTTGTAAAATCTCAAATGTTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATAA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAA
6180157 GGGATAGGGGGCCAATATAA-G-GG-CCCATCGCACATCATGTGCGTACACCCCCAGCCCCCCCG
196 GGGATAGGGGGCCAATATAAGGAGGACCCATCGCACATCATGTGCGTACACCCCCAGCCCCCCCG
** *
6180219 ATCGTTTAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGACGGTGACCCGATG
261 ATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC-ACGGTG-CCCGATG
* * ** **
6180284 AAGAAAAATGCGACACCTGCAAATGCTTGAGCCTAGCATGTGCTGCCGCAACCCTCAATCTGGTC
324 AAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * * *
6180349 CGATATTAGACTGGGAATTAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAATTCA
389 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTAAGCCTAAGTCA
* * * * *
6180414 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATTG
454 ACCCACAAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATAG
* * * ** * * * *
6180479 GTCGGATCCCCCTCTGCATGCTGTTGATCTTGCTGCCATAACCCTCAAT-CTGGTCTGATCTTAG
519 CTCGGATCCACCTCTACATGCTGCCGATCCTACTACCACAACCCTCAATCCT-GTCTGATCTTAG
* * * *
6180543 ACTGGGAGTGAACT-TCGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGAGTAGGGGGCGGGC
583 ACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCAGGCG-G--GCGGGCGGGC
* * * * * * *
6180607 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
644 ACTACATCGGCAAGAAAGACGGGATGCGCAAGCCATGGATCGATAGAGTGATAGGTGGGTTTAGG
* *
6180672 CACATCTTCATATTTCAATG-TGCCAATGCCATTTTTGTGGCTTTTAAATTCATACAATGGTCCC
709 CACATCTTCATATTTC--TGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
6180736 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTCACGACCTTTGAAA
772 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTCACGACCTTTAAAA
* *
6180801 CTTTTTACGGTTTCGTGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTGG-C
837 CTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAAG-ATTTTTGGCC
* *
6180851 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCT-AAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACT
*
6180915 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-TCCCATTTCAGACACTTCGAA-GGC
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCT-CCATTTCAGACACTT-TAATGGC
*
6180978 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
6181043 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC
194 AAGGGATAGGGGGCCAATATAA-GG---AG-----G-ACCCATCGCACATCATGTGCGTACA-CC
* * * * * *
6181108 CCCAGCCCCCCCGATCGCCGAAACCCCATTGCCGTCGGTCTGGTTCTCCGACAATGCTCCGACAA
248 CCCAGCCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC-A
* ** * * * *
6181173 TGGTGCCCCGACAAAGAAATATGC-AGCACCAGCACATGCCCGAGCCCAGCATCTGCTGCCACAA
312 CGGTG-CCCGATGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA
* *
6181237 CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
375 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
6181282 CTAAGCCAAC
Statistics
Matches: 1150, Mismatches: 130, Indels: 69
0.85 0.10 0.05
Matches are distributed among these distances:
875 45 0.04
876 7 0.01
877 3 0.00
878 18 0.02
879 2 0.00
880 1 0.00
885 6 0.01
886 264 0.23
887 2 0.00
888 143 0.12
889 251 0.22
890 34 0.03
891 202 0.18
892 1 0.00
894 1 0.00
899 1 0.00
901 23 0.02
902 146 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAA
GGGATAGGGGGCCAATATAAGGAGGACCCATCGCACATCATGTGCGTACACCCCCAGCCCCCCCG
ATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACACGGTGCCCGATGAA
GAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTAAGCCTAAGTCAAC
CCACAAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATAGCT
CGGATCCACCTCTACATGCTGCCGATCCTACTACCACAACCCTCAATCCTGTCTGATCTTAGACT
GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACAT
CGGCAAGAAAGACGGGATGCGCAAGCCATGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCT
TCATATTTCTGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTCACGACCTTTAAAACTTTTTACG
GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCC
Found at i:6182007 original size:26 final size:26
Alignment explanation
Indices: 6181978--6182033 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6181968 CCAGTCCGAT
6181978 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
6182004 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
6182030 CTTA
1 CTTA
6182034 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:6184181 original size:911 final size:899
Alignment explanation
Indices: 6181225--6184787 Score: 3394
Period size: 911 Copynumber: 3.9 Consensus size: 899
6181215 AGCCCAGCAT
* * * * * * * *
6181225 CTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
1 CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
* * * *
6181290 ACTGATGAAAA-GA--A--CGGACGGGCGGGCACTACGCCGACCAGAGAGACGGGATG-CGCAAG
66 ACCGA-CAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA-GACGCAAG
* * * * * * *
6181349 CCGTGGATCGATAGAGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCAT
129 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACCTGCCAATGCCAT
* * * *
6181414 TTTTATGGCTTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAATTTCA-AGCAAGAC
194 TTTTATGGC-TTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** * * * * * *
6181478 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTGCAG-TTCGGAATTTTTAAAATTTTT
258 GACTCATTTTCCATTTTTCACGATTTTCAAAAC-TTCTTACGGTTTGGGATTTTTTAAAA-TTCT
* * * * * * ** *
6181542 TTCGAAATGAGTGTTGGCCCCCAAACTTGGTAGATAGGATCCTTTTATTTTTGTTGGCATGCACA
321 TTCGGAAGGAGTTTTGG-CACCAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCAAA
* * * * * *
6181607 AAAAAATTCAGCAAAAATCTCGAAGCGAACAAGATTTTGTGACCATATTGAAAAAAATTGTC-CC
385 AAAAAAGTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCAT-TT-CAAAAAAGTGTCACC
* ** * * *
6181671 ATTTCAGACACTTTAATGGCTATTGGCAAGCACGGCGTGTAAAAATCTCCAATGCTCTTT-A-GG
448 ATTTCAGACACTTTAATGGCTACTGGC-AGCA-AACCTG-AAAAATCTCAAATGCTATTTAAGGG
* * *
6181734 GGGTGTGAGTTCTCGAGGTTTGGATGAGGGATAGGCGGGCCAATATAAGGGCCAAGTACCAGCAC
510 GGGTGTGAGTTCTCAAGGTTT-GATGAGGGATAGG-GGGCCAATATAAAGGACAAGTACCAGCAC
* ** * * * * *
6181799 CCATCGGCACATCATGTGCGCACAACCCCCTAGGCCCCCCGATCGGCCGGAACCCTAAATGGC-T
573 CCATC-ACACATCATGTGCGCAC-ACCCCCCCGGCCCCCCAATC-GTCAGAACCC-CAATGCCAT
** * * ** **
6181863 GCCAATCAGGTTCT-TGCACGATGCTCCGGCGATGGGTGCCCCGGTGAAGAAAAATATGGCACCA
634 --CGGTCAGGTTCTCCG-ACGATGCTCCGACGAT-GGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * * *
6181927 GCACGTGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
695 GCACATGACCGACCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAT
* * * * * * *
6181992 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGTGTG
760 GAACTTCGTATGCTTAGACTGGGAACGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTG
* ** * * * ** **
6182057 CGGGCGTTCAGTTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCG
825 -GGGCGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGACGGGGATCAACCGGGTCCCCCTCTATG
**
6182122 TGCTGTCGATC
889 TGCTACCGATC
* * * * * *
6182133 CTACTGCCACAACCCTCAGTCTGATCCCATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
1 CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
* ** * * *** * *
6182198 ATCGATGAAACGAGCAGACGGGCGGACGGACGGGTGGGCATTATATCGGCTAGAGAGACGGCATG
66 ACCGACAAAACGAGC--A--GGC-G--GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGA-G
* * * ***
6182263 -CACAAGCC-TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
122 ACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACCTGCCA
* *
6182326 ATGCGATTTTTATGGCTTGTAAAA-TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
187 ATGCCATTTTTATGGCTTG-AAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** ** * * * **
6182390 GCAAGACAACTCGTTTTCTATTGCTCACGATTTTTGAAACTTTTTTATGGTGTCAGATTTTTTTA
251 GCAAGACGACTCATTTTCCATTTTTCACGATTTTCAAAAC-TTCTTACGGTTTGGGA-TTTTTTA
* * * * * *
6182455 AAATTTTTTTGGAAGGATTTTTGGTC-CCAAACTTGGTAGGACGTGATCCTTGTATTTTTTTTGG
314 AAATTCTTTCGGAAGGAGTTTTGG-CACCAAACTTGGTA-GACATGATCCTTGAATTTTTGTTGG
* * *** *
6182519 TATGC---AAAAAATTCAGGCCTGAAACTCGAAGTGGTACAAGATTTTGTGA-CATTTTGAAAAA
377 CATGCAAAAAAAAAGTCA-GCAAAAAACTCGAAGT-GTACAAGATTTTGTGACCA-TTTCAAAAA
* * * * *
6182580 AGTATCCCCCCATTTCAGACAGTTTAAGTGGCTACTGGCCAAGC-AACCTGTAAAATCTTCAAAA
439 AGTGT--CACCATTTCAGACACTTTAA-TGGCTACTGG-C-AGCAAACCTGAAAAATC-TCAAAT
* * * *
6182644 GCTTCTTTAAGGGGGG-GTGAGTTTTTGAAGG-TTGA-GCACGGGATAGGGGGGCCAATATAAGG
498 GC-TATTTAAGGGGGGTGTGAG-TTCTCAAGGTTTGATG-A-GGGATA-GGGGGCCAATATAAAG
* * *
6182706 GCCAAGGTACCA-CACCCCATCTGCATATCAATCGTTGCGCACACCCCCCC-G-------ATCGT
558 GACAA-GTACCAGCA-CCCATC-ACACATC-AT-G-TGCGCACACCCCCCCGGCCCCCCAATCGT
* * * *
6182762 C-GGA-CCCAATGCC-GC-GTCAGAG-TCTCTG--G-T--T-----GATGGTGCCCC-AGCAAAG
617 CAGAACCCCAATGCCATCGGTCAG-GTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAG
* * * * **
6182811 AAAAATGAGGCA-CAGCACATGCCCGAGCCCAGCATGTGCCTTGCCGGCAACCCCCCCTCCGGTT
680 AAAAATGCGGCACCAGCACATGACCGACCCCAGCATGTG-C-TGCC-GCAACCCTCAGTCCGG-T
* * * * * *
6182875 CCGTTTGATCTTAGACACTGGCCAATGAACTCCAATACT-CTTAGATTGGGAATGAACT-CTTA-
741 CC----GATCTTAG--ACTGG-GAATGAACTTC-GTA-TGCTTAGACTGGGAACGAACTCCGTAC
* *
6182937 GCCCTAAGCAGGAAACTCACGTCGGACCCGCAGAACGAGCGTGGGGCGCTCAGCTGACCAGAGGG
797 G-CCTAAGC---CAA--C-C--C--A--CG-A-AACGAGCGTGGGGCGCTCAGCCGACCAGAGGG
* * * *
6183002 GCGGGATGCGTAAGACGGGGATCAACCGGGTCCCCCTCTATGTGTTGCCGATC
847 GCGAGATGCGCAAGACGGGGATCAACCGGGTCCCCCTCTATGTGCTACCGATC
* * ** *
6183055 CTGCTATCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
1 CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
* * ** *
6183120 ACCGACGAAATGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCC
66 ACCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAGACGCAAGCC
* * *
6183185 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAGTGCCATTT
131 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACCTGCCAATGCCATTT
* *
6183250 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
196 TTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
**
6183315 TCATTTTCTGTTTTTCACGATTTTCAAAACTT-TCTACGGTTTGGGATTTTTTAAAATTCTTTCG
261 TCATTTTCCATTTTTCACGATTTTCAAAACTTCT-TACGGTTTGGGATTTTTTAAAATTCTTTCG
* * * *
6183379 GAAGGATTTTTGGC-CCTAATCTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAAA
325 GAAGGAGTTTTGGCACC-AAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCAAAAAAA
* * * *
6183443 AATTCCGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTCGAAAAAGGTGTCCCCATTTC
389 AAGTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTC-AAAAAAGTGTCACCATTTC
* *
6183507 AGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAA-GGGGGTGTGT
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTATTTAAGGGGGGTGTGA
* *
6183571 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTATCAGCACCCATCACACA
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGACAAGTACCAGCACCCATCACACA
* * *
6183636 TCATGTGCGCACACACCCCCCCGGCCCCCCAATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTT
583 TCATGTGCG--CACACCCCCCCGGCCCCCCAATCGTC-AGAACCCCAATGCCATCGGTCAGGTTC
* * *
6183700 TCCGATGATGCTCCAGCTCTAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
645 TCCGACGATGCTCC-G----A-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGAC
* * * *
6183765 CGACCCCAGGATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGT
704 CGACCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* * *
6183830 ATGCTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
769 ATGCTTAGACTGGGAACGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCGCTC
* * * * * *
6183895 AGCCGGCCAGTGGGGCGAGATGTGCAAGCCGGGGATCGACTGGGTCCCCCTC-AGTGTGCTACCG
833 AGCCGACCAGAGGGGCGAGATGCGCAAGACGGGGATCAACCGGGTCCCCCTCTA-TGTGCTACCG
6183959 ATC
897 ATC
*
6183962 CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
1 CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
* * *
6184027 ACCGACAAAACGAGCAGGCGGGCGAACGGGCGGGCACTATGTCGGCCAGAGAGACGGGAGGCGCA
66 ACCGACAAAACGAGCAGGC-GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGAGACGCA
* * *
6184092 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCC
127 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACCTGCCAATGCC
*
6184157 ATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
6184222 CGACTCGTTTTCCATTTTTCATGATTTTCGAAACTTCTTGTGGTTTGGGATTTTTTAAAATTTTT
257 CGACTCATTTTCCATTTTTCACGATTTTCAAAACTTCTTACGGTTTGGGATTTTTTAAAATTCTT
* *
6184287 TCGGATGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAA
322 TCGGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCAAAAA
* * * *
6184352 AAAAGTCAGCTAAAAACTCGTAGTGTATAAGATTTTGTGAGCATTTCAAAAAAGTGTCACCATTT
387 AAAAGTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCACCATTT
* *
6184417 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTATTTAAGGGGGGTGTG
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTATTTAAGGGGGGTGTG
** * *
6184482 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCAC
517 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGACAAGTACCAGCACCCATCACAC
* * *
6184547 ATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCAGAACCTCAATGCCATCGGTCAGGTTCTC
582 ATCATGTGCGCACACCCCCCCGGCCCCCCAATCGTCAGAACCCCAATGCCATCGGTCAGGTTCTC
* * *
6184612 CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGACCGAGCCCA
647 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGACCGACCCCA
*
6184677 GCATGTGCTGCCGCATCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
712 GCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* *
6184742 ACTGGGAACGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
777 ACTGGGAACGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCG
6184788 GGTAGGTGGG
Statistics
Matches: 2239, Mismatches: 283, Indels: 270
0.80 0.10 0.10
Matches are distributed among these distances:
898 25 0.01
899 22 0.01
900 11 0.00
901 12 0.01
902 16 0.01
903 6 0.00
904 159 0.07
905 24 0.01
906 37 0.02
907 157 0.07
908 86 0.04
909 34 0.02
910 100 0.04
911 399 0.18
912 128 0.06
913 70 0.03
914 74 0.03
915 155 0.07
916 4 0.00
917 27 0.01
918 57 0.03
919 172 0.08
920 123 0.05
921 34 0.02
922 172 0.08
923 48 0.02
924 3 0.00
925 7 0.00
926 7 0.00
927 3 0.00
928 11 0.00
929 4 0.00
930 27 0.01
931 25 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTGCTACCGCAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
ACCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAGACGCAAGCC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACCTGCCAATGCCATTT
TTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCATTTTCCATTTTTCACGATTTTCAAAACTTCTTACGGTTTGGGATTTTTTAAAATTCTTTCGG
AAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCAAAAAAAAA
GTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCACCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTATTTAAGGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGACAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCCCGGCCCCCCAATCGTCAGAACCCCAATGCCATCGGTCAGGTTCTCCGAC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGACCGACCCCAGCAT
GTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
GGAACGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGGGGCGCTCAGCCGACCAGAGG
GGCGAGATGCGCAAGACGGGGATCAACCGGGTCCCCCTCTATGTGCTACCGATC
Found at i:6184747 original size:26 final size:26
Alignment explanation
Indices: 6184711--6184763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6184701 CCGGTCCGAT
* *
6184711 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
6184737 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
6184763 C
1 C
6184764 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:6186200 original size:26 final size:26
Alignment explanation
Indices: 6186163--6186218 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6186153 CTGGTCCGAT
6186163 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
6186189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
6186215 CTTA
1 CTTA
6186219 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:6188762 original size:26 final size:26
Alignment explanation
Indices: 6188724--6188779 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6188714 TGGGTTGACT
6188724 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
6188750 TAAGCATATGGAGTTCATTCCCTGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6188776 TAAG
1 TAAG
6188780 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6190116 original size:708 final size:711
Alignment explanation
Indices: 6188753--6190978 Score: 3127
Period size: 708 Copynumber: 3.1 Consensus size: 711
6188743 CCCAGTCTAA
* *
6188753 GCATATGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * *
6188818 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
6188883 ACCTGACTGGCAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
6188947 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAAAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
6189012 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* *
6189077 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCCCTTTGAGATTTTTGCTGAATTTTTTTGT
326 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTGCTGAA-TTTTTTGT
*
6189142 GCATGCCAACAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTTGAAAAAA
390 GCATGCCAACAAAAAT-AAAGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAA
6189207 TTTTAAAAAATT-TCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
454 TTTTAAAAAATTCT-GAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
6189271 GCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
6189336 TTGGAATGCAGTAATATGAAGATGTGCCTAAACCCTCCTACCACTCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
6189401 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-CCCGCCCG-CTCT-TTTTATCGGTTGCCTTAG
648 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCGCCCGCCTCTGTTTTATCGGTTGCCTTAG
* * *
6189462 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
6189527 CTCGGGCATGTGCT-GTGTCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
6189591 ACCAGACCGACGGCATTGGGGTTTCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGG-TTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
6189655 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
6189720 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
6189785 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTGCTGAATTTTTTGT
325 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTGCTGAATTTTTTGT
6189850 GCATGCCAACAAAAATAAGAGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATAA-AGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAA
* *
6189915 TTTTAAAAAATTCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTA
454 TTTTAAAAAATTCTGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
*
6189980 CCTTGAAATTTCACGTGAAGGCTTAACGGAACATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
6190045 TGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
6190110 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCCGCCCCACCTACCCGCTCGTTTCGTCGGTTGGC
649 ATCCCGTCTCTCTGGTCGACGTAGTG--C--CCG--CC-CC-GCCCGC-C---TC-T--GTT---
*
6190175 TTAGGCATACGGAGTTCGTTCCCAGTCTAA
696 TT----AT-C-G-GTT-G---CC--T-TAG
* * * *
6190205 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
6190270 CTCGGTCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
6190335 ACCTGACCGATGGCATTGAGGTTCTGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
6190400 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
6190465 CCCCCTTAAATAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* * * * * * * *
6190530 GCGACACTTTTTTGAAATGCTCACAAAATCTTATACACTTCGAG-TTTTTAGCTGACTTTTTTTT
326 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTT-GCTGA-ATTTTTTG
* * * * * * *
6190594 TGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCATCCGAAAAA
389 TGCATGCCAACAAAAA-TAAAGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAA
* ** * * * * * *
6190659 ATTTTAAAAAATCCCAAACCACAAGAAGTTTCGAAAATCATGAAAAATGGAAAACGAGTCGTCTT
453 ATTTTAAAAAATTCTGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
* * * * *
6190724 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCA
518 GCCTTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
6190789 TTGGCACGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
6190854 CCTCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTTCGCCCGCCTGCTCGTTTTGTCGGTTGGC
648 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC---CGCCCGCCT-CT-GTTTTATCGGTTGCC
6190919 TTAG
708 TTAG
* * * * *
6190923 GCATATGGAGTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
6190979 GGATCGGTAG
Statistics
Matches: 1356, Mismatches: 113, Indels: 87
0.87 0.07 0.06
Matches are distributed among these distances:
707 2 0.00
708 342 0.25
709 291 0.21
710 1 0.00
712 3 0.00
715 1 0.00
716 2 0.00
717 4 0.00
718 51 0.04
719 2 0.00
721 1 0.00
722 2 0.00
723 1 0.00
724 1 0.00
725 3 0.00
726 3 0.00
727 1 0.00
728 1 0.00
729 2 0.00
732 2 0.00
733 2 0.00
734 1 0.00
735 4 0.00
736 5 0.00
737 2 0.00
738 1 0.00
739 3 0.00
740 7 0.01
741 4 0.00
742 1 0.00
743 83 0.06
744 267 0.20
745 258 0.19
746 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
GGGACATTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGATTTTTGCTGAATTTTTTGTG
CATGCCAACAAAAATAAAGGATCCTATCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAATT
TTAAAAAATTCTGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
TTGAAATTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCGCCCGCCTCTGTTTTATCGGTTGCCTTAG
Found at i:6190209 original size:26 final size:26
Alignment explanation
Indices: 6190179--6190231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6190169 GTTGGCTTAG
* *
6190179 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6190205 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6190231 G
1 G
6190232 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6192911 original size:26 final size:26
Alignment explanation
Indices: 6192873--6192928 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6192863 TGGGTTGACT
6192873 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
6192899 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6192925 TAAG
1 TAAG
6192929 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6193529 original size:905 final size:902
Alignment explanation
Indices: 6190155--6193667 Score: 4669
Period size: 911 Copynumber: 3.9 Consensus size: 902
6190145 CCCACCTACC
* * * *
6190155 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * *
6190220 TCCCAGTCTAAGATCGGACCGGACTGAGGGATGCGGCAGCACATGCTGGGCTCGGTCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * * *
6190285 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGATGGCA
131 GTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCA
* *
6190350 TTGAGGTTCTGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
196 TTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
6190415 TTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCA
260 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * *
6190480 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTGA
325 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
6190545 AATGCTCACAAAATCTTATACACTTCGAGTTTTTAGCTGACTTTTTTTTTGCATGCCAACAAAAA
390 AATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
6190610 TTCAAGGATCATGTCTACCAAGTTTGGTGCCAAAACTCCA-TCCGAAAAAATTTTAAAAAATCCC
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CATTCCAAAAAAATTTTAAAAAATCCC
* * * *
6190674 AAACCACAAGAAGTTTCGAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCAC
518 AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
6190739 CTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGTAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
6190804 ATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCCTCCCGTCTCTCTG
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
6190869 GCCGACATAGTGCCCGCCCGT-T-CGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATATGGA
713 GCCGACATAGTGCCCGCCCGTCTCCGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* *
6190932 GTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACACTGA
777 GTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGA
* * * * *
6190997 GGGGGACCCAGTCGATCCCCGGCTTGCACATCTCGCCCCACTGGCCGGCTGAGCGCCCGCA
842 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA
*
6191058 CGCTCGTTTCGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * *
6191123 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATCCTGGGGTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *
6191188 GTGCCACATTTTTCTTCGTCGGGGCACCATCGCTAGAGCTGGAGCATCATCGGAA-AACCTGACC
131 GTGCCACATTTTTCTTCGCCGGGGCACCATCGC-----C-GGAGCATCGTC-GAAGAACCTGACC
* *
6191252 GACGGCATTGGGGTTCC-AGCGATTGGGGGGCCGGGGGGGTGTGTGCGCACATGATGTGTGATGG
189 GACGGCATTGGGGTTCCGA-CGATCGGGGGGCC--GGGGG-GTGTGCGCACATGATGTGCGATGG
* * ** *
6191316 GTGCTGATACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCC
250 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
*
6191381 TTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
315 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
6191446 ACCTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCGGAATTTTTTTGTGCATG
380 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTGCTGAATTTTTTTGTGCATG
* * * * * * *
6191511 CCAACAAAAATTCAAGGATCACGTCTACCAAGATTAGGGCCAAAAATCCTTCCGAAAGAATTTTA
444 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTA
** * ** * * *
6191576 AAAAATCCCAAACCGTAGAAAGTTTTGAAAATCGTGAAAAACAGAAAATGAGTCATCTTGCCATG
509 AAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
6191641 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCA
574 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
6191706 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCC
639 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
6191771 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-CCG-CC-C-ACTCATTTCGTCGGTTGGCTTAGG
704 GTCTCTCTGGCCGACATAGTGCCCGCCCGTCTCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * *
6191831 TATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGGCAA
769 CATACGGAGTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * *
6191896 CACATAGAGGGGGACCCGGTTGATCCCCGTCTTACGCATCCCGCCCCTCTGGTCAGCTGAGCGCC
834 CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
*
6191961 CCCA
899 CGCA
* * * * *
6191965 CGCTCG-TTCTGCGGGTTGACTTAGGCTTACAGAGTTCATTCCCAATCTAAG-AGTATGGAGTTC
1 CGCTCGTTTC-GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA-TACGAAGTTC
** *
6192028 ATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
64 ATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
6192093 TGGTGCCGCATTTTTCTTTGCTGGGGCACCAT---C--A-C--C--AG-AGAACCTGACCGGCGG
129 TGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGG
*
6192147 CATTGGGGTTCCGACGATC-----G--GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTA
194 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
6192205 CTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAAAACTCACACCCCCTTAAAGAGC
259 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * *
6192270 TTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGATACTTTTTTC
324 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
6192335 AAATTGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATACCAAAAAAA
389 AAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
6192400 ATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCCC
* * ** *
6192465 GAACCATAAAAAGTTTCAAAAATCGTGAGCAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAC
518 AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
6192530 ATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATCGCATTGGCACACAGAAAT
583 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * * *
6192595 ATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCA-GGCTTGTGCATGCCGTCTCTCTA
648 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
6192659 GCCGATATAATGCCCACCCGTCCGTCCGCCCGTCTGCTCGTTTCATCGATTGGCTTAGGCATACG
713 GCCGACATAGTGCCCGCCCGT-C-TCCGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
6192724 GAGTTCATTCCCAGCCTAAGATGGGATCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
775 GAGTTCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACACA
* * *
6192789 GAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAACGCCCGCA
840 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA
* * * * *
6192852 CACTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * *
6192917 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCACGTGCTG
66 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * *
6192982 GTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGATTGGCAGCA
131 GTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCA
* * *
6193047 TTAGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
196 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
6193112 TGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
261 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* *
6193177 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAA
326 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
6193242 ATGGTCACAAAATCTTGTTCGCTTCGAGATTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAAT
391 ATGGTCACAAAATCTTGTACACTTCGAG-TTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * *
6193307 AAAAGGATC-CTATCTACCAAGTTTGGGGCCAACACTCATTTCAAAAAAATTTTAAAAAATTCCG
455 ACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCCCA
** * * *
6193371 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAATTTCACG
519 AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
6193436 TGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGTAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
6193501 TGAAGATGTGCCTAAACCCTCCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
6193566 TCGGCGTAGTGCCCGCCCG--T----CCG-T--TCTTTTCATCAGTTGGCTTAGGCATACGAAGT
714 CCGACATAGTGCCCGCCCGTCTCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
6193622 TCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAG
779 TCATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAG
6193668 ATGCTGGGCT
Statistics
Matches: 2288, Mismatches: 271, Indels: 111
0.86 0.10 0.04
Matches are distributed among these distances:
879 38 0.02
880 413 0.18
881 6 0.00
883 3 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 271 0.12
888 4 0.00
889 1 0.00
890 31 0.01
891 1 0.00
892 1 0.00
893 2 0.00
894 69 0.03
895 2 0.00
896 2 0.00
897 1 0.00
898 33 0.01
899 1 0.00
902 1 0.00
903 149 0.07
904 1 0.00
905 422 0.18
906 42 0.02
907 274 0.12
908 5 0.00
909 42 0.02
910 10 0.00
911 454 0.20
912 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCCCAAA
CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACATAGTGCCCGCCCGTCTCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATGGGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGG
GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA
Found at i:6194268 original size:710 final size:710
Alignment explanation
Indices: 6192910--6194383 Score: 2124
Period size: 710 Copynumber: 2.1 Consensus size: 710
6192900 AAGCATATGG
**
6192910 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* **
6192975 CGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGATT
66 CGTGCTGGTGCCATA-TTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCAGACC
* * *
6193040 GGCAGCATTAGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GACAGCAATAGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGC
*
6193105 TGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
6193170 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGAACACTT
* *
6193235 TTTTCAAATGGTCACAAAATCTTGTTCGCTTCGAGATTTTTGCTGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTTGCTGAATTTTTTTGTGCATGCCAA
* * *
6193300 CAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAACACTCATTTCAAAAAAATTTTAAAAA
390 AAAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAACAATCATTCCAAAAAAATTTTAAAAA
* * * *
6193365 ATTCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAAT
455 ATTCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
6193430 TTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
520 TTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCA-GCA
* * * *
6193495 GTAATATGAAGATGTGCCTAAACCCTCCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
* * * * * *
6193560 CTCTGGTCGGCGTAGTGCCCG-C-C-CGTCCGTTCTTTTCATCAGTTGGCTTAGGCATACGA
649 CTCTGGCCGACGTAGTGCCCGCCACTCGCCCGCTCGTTTCATCAGTCGGCTTAGGCATACGA
* *
6193619 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* *** * * * *
6193684 TGTGCTGGTGCTGCATA-TTTCTTTGTCGGGGCACCATTGTCGGAGCATTGTCGGAGAACCAGAC
66 CGTGCTGGTGC--CATATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCAGAC
* * * **
6193748 CGACGGCAATGGGGTTTCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGT
129 CGACAGCAATAGGGTTCCGGCGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGT
*
6193813 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
6193878 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-TTCGAAGTGTCTGAAATGGGAACA
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT-AAAGTGTCTGAAATGGGAACA
6193942 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATG
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTT-GCTGAATTTTTTTGTGCATG
* * * *
6194006 CCAAAAAAAAATACAAGGATCAC-GTCTACCAAGTTT-GGGCCAA-AATGCCTTCCGAAAAAATT
386 CC-AAAAAAAATAAAAGGATC-CTATCTACCAAGTTTGGGGCCAACAAT-CATTCCAAAAAAATT
* ** *
6194068 TTAAAAAA-TCACGAACCGTAAAAAGTTTCAAAGGTCGTGAAAAATAGAAAATGAGTCGTCTTGC
448 TTAAAAAATTC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
6194132 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATT
512 CATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTAAAAGCCACAAAAATGGCATT
6194197 GGCA-CATTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
577 GGCAGCA--GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
* *
6194261 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCTACTCGCCCGCTCGTTTCGTCGGTCGGCTT
640 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG---CC-ACTCGCCCGCTCGTTTCATCAGTCGGCTT
6194326 AGGCATACGA
701 AGGCATACGA
* * ** *
6194336 AGTTCACTCCCAGTCTAAGATCAGACCAGATTGAGGGTTATGGCAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCA
6194384 AGATCAACAG
Statistics
Matches: 680, Mismatches: 67, Indels: 28
0.88 0.09 0.04
Matches are distributed among these distances:
708 2 0.00
709 139 0.20
710 432 0.64
711 32 0.05
712 1 0.00
714 1 0.00
716 1 0.00
717 72 0.11
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (710 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
CGTGCTGGTGCCATATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCAGACCG
ACAGCAATAGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGAACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTTGCTGAATTTTTTTGTGCATGCCAAA
AAAAATAAAAGGATCCTATCTACCAAGTTTGGGGCCAACAATCATTCCAAAAAAATTTTAAAAAA
TTCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGAACATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCAGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCACTCGCCCGCTCGTTTCATCAGTCGGCTTAGGCATACGA
Found at i:6194533 original size:25 final size:26
Alignment explanation
Indices: 6194486--6194536 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
6194476 GTTGACTTAG
*
6194486 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6194512 GCATACGGAGTT-ATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6194537 TATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.