Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 54 of 120
Found at i:6196891 original size:26 final size:26
Alignment explanation
Indices: 6196862--6196914 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6196852 GTTAACTTAG
6196862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6196888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6196914 G
1 G
6196915 ATCGAATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6198207 original size:905 final size:893
Alignment explanation
Indices: 6195802--6198885 Score: 3948
Period size: 905 Copynumber: 3.4 Consensus size: 893
6195792 TCTACCAAGT
* * * *
6195802 TTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGAT-TGAACCGGACTGAGGGTTAC-G-ATA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCAGCA-A
* ** ** * **
6195864 GCAGGATCGACAGCACGCAGAAAGGGACTTGGCCGATCCCTAGCTTGCGCATCCC-CCCCTCTAA
64 -TAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
** * *
6195928 CCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAATCT
128 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *** *
6195993 AAGCATATGGAGGTCATTCCCAGTTTAAGATCGGATCGAA-TCGAAGGTTGTAGCAGTACATGCT
193 AAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGAACT-GAGGGTTACGGCAGCACATGCT
* * * * *
6196057 GGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCG-TCGA-AGAACCTGA
257 GGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTCGAGAGAACCTGA
* * * * * *
6196120 CCGGCGACATTGGGGATCCGACAATCGAGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGG
322 CCGACGACATTAGGGTTCCGACGATCGAGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGATGG
* **
6196185 GTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCC
387 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCC
6196250 TTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
452 TT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * ** * *
6196315 AGTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTGAAGATGAATTTTTTTTTGCATG
516 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * * *
6196380 CCAACAAAAAGACAGGGATCATGTCTATCGAGTTTGGGTCCAAATCCCCTTCTGAAAAAA-TTTA
581 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTA
* *
6196444 GAAAAATCCCGAATCGT-AAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCAT
646 -AAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
6196508 GAAACTTCACGTAAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
709 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
6196573 ATGCAGAAATGTGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTGCGC-GTC
774 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATTC
* * * * *
6196637 CTGTCTCTCCGACCGTCGTAGTGCCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
839 C-GTCTCTCTGGCCGACGTAGTG-CCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
* * *
6196694 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAT-A-GGTTGCAGCAG
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-C-TGAGGGTTGCAGCAA
* * * ** * *
6196757 TAGCAT-TAGCAGCACGCGGAGGGGGACCCAACCGATCCCCAGCTTGCACATCCCGCTCCTCTGG
64 TAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
** * * *
6196821 CCAACTGAGCGCCCGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT
128 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
6196886 AAGCATACGGAGTTCATTCCCAGTCTAAGAT-CGAATC-AGACCGAGGGTTGCGACAGCACATGC
193 AAGCATACGGAGTTCATTCCCAGTCTAAGATCCG-ATCGA-ACTGAGGGTTACGGCAGCACATGC
** * * *
6196949 TGGGCTTGAGCATGCGCTGGTGCCGCATTTTTCTTCGAT-GGGGCACCATCGC-CG-GAGAACTT
256 TGGGCCCGGGCATGCGCTGGTGCCACATTTTTCTTC-ATCGGGGCACCATCGCTCGAGAGAACCT
* * * * *
6197011 GACCGGCGACATTAAGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTCCGCACATGATGTGCGAT
320 GACCGACGACATTAGGGTTCCGACGATCGAGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGAT
* ** * *
6197075 GGGTGGTACTACTTGGCTCTTATATTGGCCCCCTATCTCTCATCAAACCTCCAGAACTCACACCC
385 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCC
* *
6197140 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGAAATGGGG
450 CCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
6197205 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCA
514 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
6197270 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTT
579 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTT
* * *
6197335 TAAAAAATCTCGAACGGTAAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTCATCTTGCCA
644 TAAAAAATCCCGAAC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
* * *
6197400 TGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTGCAAGCCATTAAAATGGCATTGG
708 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
6197465 CAGGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCGCATT
773 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATT
* * * * * *
6197530 CCGTCTCTCTGGCTGGCATAGTGACCGCCCGCCCGCCCGTCTACTTATTTCGTCGG
838 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
* * * * * * *
6197586 TTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATTAGACCAGATTGAGGGTTGTAGGAATA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAATA
* * * * **
6197651 GGATCGACAGCATGCAGAGGGGGACCCGGCCGAGCCCCGGCTTGCGCATCCCACCCCTCTGGTTG
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* *
6197716 GCTGAGCGCCCGCACGCTCGTTTAATGGTTTGACTTAGGCATACGGAGTTCATTCCCAG-CATAA
131 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TAA
* *
6197780 GCATGCAGAGTTCATTCCCAGTCTAAGATCCGA-CTGAACTGAGGGTTACGGCAGCACATGCTGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCCGATC-GAACTGAGGGTTACGGCAGCACATGCTGG
* **
6197844 GCCCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAGAG
259 GCCCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCAT---C---GC-TCG--AGAG
* *
6197909 AACCTGACCGACGACATTAGGGTTTCAACGATCG-GAGGGGCTAGGGGGGGTGTGCGCACATGAT
315 AACCTGACCGACGACATTAGGGTTCCGACGATCGAG-GGGGC-AGGGGGGGTGTGCGCACATGAT
* *
6197973 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
378 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACT
* * *
6198038 CACACCCCCTTAAGGAGCGTTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAA
443 CACACCCCCTTAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
6198103 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
507 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
6198168 TTGTGCATGCCAAGAAAAATTCAAGGATCGTGTCTACCAAATTTGGGGCCAAAACCCCTTCTGAA
572 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAA
**
6198233 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
637 AAAATTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* * *
6198298 CTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACATGCCATGAAAATG
701 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
6198363 GCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
766 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* *
6198428 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTTGTCGG
831 GCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
* * *
6198491 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAGTA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAATA
* * * * *
6198556 GGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
6198621 GCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAAG
131 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
6198686 CATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGC
196 CATACGGAGTTCATTCCCAGTCTAAGATCCGATCGAACTGAGGGTTACGGCAGCACATGCTGGGC
* *
6198751 CCGGGCATACGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTTGGAGCATC-ACCGGAGA
261 CCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC------GC-TCGA---GAGA
* * * * *
6198815 ACCTGACCGATGACATTAGGGTTCTGGCGATCAAGGGGGCTA-GGGGGGTGTGCTCACATGATGT
316 ACCTGACCGACGACATTAGGGTTCCGACGATCGAGGGGGC-AGGGGGGGTGTGCGCACATGATGT
*
6198879 GTGATGG
380 GCGATGG
6198886 AAGGGGACCC
Statistics
Matches: 1904, Mismatches: 238, Indels: 88
0.85 0.11 0.04
Matches are distributed among these distances:
890 1 0.00
891 6 0.00
892 628 0.33
893 380 0.20
894 6 0.00
895 1 0.00
898 2 0.00
900 2 0.00
902 3 0.00
903 37 0.02
904 30 0.02
905 804 0.42
906 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (893 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAATA
GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCCGATCGAACTGAGGGTTACGGCAGCACATGCTGGGC
CCGGGCATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTCGAGAGAACCTGACCGA
CGACATTAGGGTTCCGACGATCGAGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAA
TCCCGAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATTCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTCGTCGG
Found at i:6200802 original size:24 final size:25
Alignment explanation
Indices: 6200775--6200822 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
6200765 GTTGACTTAG
6200775 GCATACGAGTTCATT-CCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
* *
6200799 GCATATGGGTTCATTCCCAGTCTA
1 GCATACGAGTTCATTCCCAGTCTA
6200823 TAGATCGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:6200856 original size:900 final size:902
Alignment explanation
Indices: 6198907--6203321 Score: 5906
Period size: 900 Copynumber: 4.9 Consensus size: 902
6198897 GCCAATTTTC
** * * *
6198907 GGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAG
1 GGCTTGCGCAT-CCTGCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
6198972 GGATACAGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCCAAGATCAGATCAGAT
64 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * *
6199037 CGAGGGTTCCGGCAGCACATACTGGGC-CTGGGCATGTGCTGGTGCGGCATTTTTCTTCGCTGAG
129 CGAGGGTTACGACAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* *
6199101 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGG
193 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* *
6199166 GCCAGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTA
258 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
6199231 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
323 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
6199296 CCAATAAG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
388 CCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
6199360 CTTTGAGTTTTTGGCTGAACTTTTTTGTGCACGCCAACAAAAAA-ACAAGGATCATGTCTACCAA
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAA
* * **
6199424 GTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACC-TAAAAAGTTTCAAAAA
516 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
6199488 TCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTG
581 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
6199553 TATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCAC
646 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
* * *
6199618 CTACCACCCTATCGATCCATGGCTTGGGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCT
711 CTACCACCCTATCGATCC-TGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
6199683 CGCCCGCCCG-CTCT--TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
775 CGCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
* ** * *
6199745 AGATGAGACTGAGGGTTGCG--GCACAGGATTGGTAGCTTGCAGAGGGGGA-CCCAGCCAATCCC
840 AAACCAGACTGAGGGTTGCGTAGCA-A-GATCGGTAGCATGCAGAGGGGGACCCCA-CCAATCCC
6199807 T
902 T
** * *
6199808 AACTTGCGCAT-CTCGCCCGTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
1 GGCTTGCGCATCCT-GCCC-TCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTA
* *
6199872 GGCATACAGAGTTCATTCCTAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
63 GGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
6199937 CCGAGGGTTGCTG-CAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCACCGG
128 CCGAGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
** * * * *
6200001 GGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGG
192 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
* *
6200065 GGCTAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
257 GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
6200130 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
322 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
6200195 GCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
387 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
6200260 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAA
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
* **
6200325 TTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
517 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
6200390 CGTGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
582 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
6200455 TTTAATTTACAAGTCACAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
647 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * *
6200520 TACCACCCTATCAATCCTCGGCTTGCGAATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCC
712 TACCACCCTATCGATCCT-GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * *
6200585 GCCCGCCCGCCTGCTCGTTTTGTCGGTTTGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC
776 GCCCGCCCGCCT-CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
** * * * * * * * *
6200650 AAACCAGACCAAGGCTTGCGTAGTAATATCGGTGGCATGCAG-CGGGGACTCGACCGATCCCT
840 AAACCAGACTGAGGGTTGCGTAGCAAGATCGGTAGCATGCAGAGGGGGACCCCACCAATCCCT
*
6200712 GGCTTGC-CATCCTGCCCTCTGGCCGGCTGAGCGCACGCATGCTCGTTTCGTGGGTTGACTTAGG
1 GGCTTGCGCATCCTGCCCTCTGGCCGGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
6200776 CATAC-GAGTTCATT-CCAGTCTAAGCATATGG-GTTCATTCCCAGTCTATAGATCGGACCGGGC
65 CATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA-AGATCGGACCAGAC
* *
6200838 CGAGCGTTACGACAGCACATGCTGGGCTCGGGCATGTTGTTGGTG-C-CATTTTTTCTTCACCGG
129 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG-TGCTGGTGCCGCA-TTTTTCTTCACCGG
*
6200901 GGCACCATCG-CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGG
192 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
* * **
6200964 GGCCGGGGGGTTTGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGATCTTATATTGGCCCCC
257 GGCCAGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
6201029 TATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTCACAGGTTTGC
321 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
6201094 TGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTAC
386 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
6201159 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAATGTCTACCAA
451 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
* * * *
6201224 GTTTGGGGTC-AAAATGCCTTCCGAAAAAATTTTAAAAAATTCCGAACCGTAAAAACTTTCCAAA
516 GTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
6201288 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAA-GGACCATT
580 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *** **
6201352 GTATGAATTTACAGGCCATAAAATTGGCATTGGCACGTGGAAATATGAAGATGTGTATAAACCCA
645 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
6201417 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCATGTCTCTGGTCGACGTAGTGCCCGCCCGT
710 CCTACCACCCTATCGATCC-TGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
6201482 ACG-CC-CCC-CCGCTCGTTTCGTCGGTTGGCTTTGGCATAC-AGAGTTCATTCCCAGTCTAAGA
774 CCGCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGA
** * * * * ** * *
6201543 TTGAACCAAACTGAGGGTTACAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCAATCCC
838 TCAAACCAGACTGAGGGTTGC-GTAGCAAGATCGGTAGCATGCAGAGGGGGACCCCACCAATCCC
*
6201608 C
902 T
* * * *
6201609 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCACACG-TCCGTTTCGTAGGTTGACTTA
1 GGCTTGCGCATCCTG-CCCTCTGGCCGGCTGAGCG-CCGCACGCT-CGTTTCGTGGGTTGACTTA
* ** *
6201673 GGCATACATAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGA
63 GGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* ** * *
6201738 CCGAGAGTTAC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTTGCATTTTACTTCATCGG
128 CCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
*
6201802 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGAATTGGGGTTCCGGCGATCGGGGG
192 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
*
6201867 GGCC-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
257 GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
6201930 ATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
322 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
6201995 GCCAGTAGCCACTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGCCACAAAATCTTGTACA
387 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
6202060 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCATG
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
* *
6202125 TTTGGGGCC-AAAATGCCTT-CGTAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
517 TTTGGGGCCAAAAAT-CCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
6202188 ATCATGAAAAATAAAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATT
580 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
6202253 GTATGAATTTTCAAACCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
645 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
6202318 CCTACCACCCTATCGATACATGGCTTGCGTATCCCATCTCTCTGGCCG--GT-GT-------AG-
710 CCTACCACCCTATCGAT-CCTGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * *
6202372 -TGCCCG--C-CCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
774 CCGCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * *
6202433 CAGACCAGACTGAGGGTTGTGGTAGTAGGATCAGG-AGCA--CATAGAGGGGACCCCACCGAT-C
839 CAAACCAGACTGAGGGTTG-CGTAGCAAGATC-GGTAGCATGCAGAG-GGGGACCCCACCAATCC
6202494 C-
901 CT
** * * *
6202495 GGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCGCACGCTCATTTCGTCGGTTGACTTAGG
1 GGCTTGCGCAT-CCTGCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
6202560 CATACGGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACC
65 CATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* **
6202625 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGC
130 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* *
6202690 ACCATCGTCGGAGCATTGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGC
195 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC
** * * *
6202755 TGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATAATGGTCCCCTA
260 -CAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
6202820 TCACTTATCAAACCTCGCGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTG
323 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * * * *
6202885 CCAATAGCTATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAACGATCACAAAATGTTGTAGAC
388 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
6202950 TTCGAGTTTTTGGCTGAATGTTTTTCTGCATGCCAACAAAAAA-ACAAGGATCATGTCTACCAAG
453 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAAG
* * * *
6203014 TTTAGGGCCAAAAATCCGTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTCGAAAAT
517 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
6203079 CATGCAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGT
582 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * **
6203144 ATGAATTTACAAGGCATAAAAATTGCTTTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
647 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* *
6203209 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
712 TACCACCCTATCGATCC-TGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
*
6203274 GCCCGCCCG--T-TTGTTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTC
776 GCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTC
6203322 TCAGATGGCA
Statistics
Matches: 3103, Mismatches: 336, Indels: 150
0.86 0.09 0.04
Matches are distributed among these distances:
885 202 0.07
886 30 0.01
887 9 0.00
888 63 0.02
889 455 0.15
890 17 0.01
891 3 0.00
892 2 0.00
894 1 0.00
895 58 0.02
896 18 0.01
897 24 0.01
898 11 0.00
899 264 0.09
900 1013 0.33
901 698 0.22
902 124 0.04
903 18 0.01
904 20 0.01
905 70 0.02
906 1 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GGCTTGCGCATCCTGCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCTGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
CCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCA
GACTGAGGGTTGCGTAGCAAGATCGGTAGCATGCAGAGGGGGACCCCACCAATCCCT
Found at i:6201711 original size:26 final size:26
Alignment explanation
Indices: 6201674--6201726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6201664 GTTGACTTAG
*
6201674 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6201700 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6201726 G
1 G
6201727 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6202595 original size:26 final size:26
Alignment explanation
Indices: 6202559--6202611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6202549 GTTGACTTAG
*
6202559 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
*
6202585 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
6202611 G
1 G
6202612 ATCAGAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:6205232 original size:26 final size:26
Alignment explanation
Indices: 6205196--6205248 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6205186 GTTGACTTAG
6205196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6205222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6205248 G
1 G
6205249 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6206699 original size:26 final size:26
Alignment explanation
Indices: 6206670--6206719 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6206660 GGTCCGATCG
*
6206670 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
6206696 TAGACTAGGAATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCATATG
6206720 TCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:6207413 original size:904 final size:896
Alignment explanation
Indices: 6205516--6208815 Score: 4372
Period size: 902 Copynumber: 3.7 Consensus size: 896
6205506 TTGCTGCTAG
* * * * * *
6205516 ATGCTTTTTAAGGGGGTGTGAGTTCTCAAAGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAA
1 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
6205580 AGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCCTCTCGGCTCCCCCTATCACCGGAAC
66 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-C-CGGC-CCCCCGATCTCCGGAAC
* * *
6205645 CCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCTCGATGAGGAAAAATG
127 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGATGAAGAAAAATG
* * * *
6205709 CGGCACCAGCACTTGCCCAAGCCCACCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
191 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCTGTCTGGTCCGATCTTAGA
* * *
6205774 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCCATGAAA
256 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** * * * *
6205839 CGAGCATGCGGGTGCTCAGCTTGCCAGAGGGGCGGGATGCGCAAGCCAGAGATCGATCGGGTCCC
321 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCC
* * * ** ** * * * * *
6205904 CCTTTGCGTGTTGCCAATCTTGTTGCTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGA
386 CCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGA
* * *
6205969 ACTCCGTATGCCTAAGCCAACCGACGAAACGA-ACGGGCGGGCAGGCGGGCACTATGTCGGCCAG
451 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCGGGCACTACGCCGGCCAG
* * *
6206033 AGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGT-CGGTGGGTTTAGGCACATATTCATAT
516 AGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAC-GTGGGTTTAGGCACATCTTCATAT
* *
6206097 TTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
580 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
* *
6206162 GAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGG
645 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* * *
6206227 GATTTTTTGAAATTTTTTTGCAAA-GAGTTTTGGCTCCAAACTTGCTAGACGTGATCCTTGTAGT
710 GATTTTTTAAAATTTTTTTG-AAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATT
6206291 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
773 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
6206356 AAAAAAGTGTCCCCATTTCAGACATTTTAATTGCTACTGGCA-ACAAACCTGTAAAATCTCAA
838 AAAAAAGTGTCCCCATTTCAGACA-CTTAA-TGCTAATGGCAGA-AAACCTG-AAAATCTCAA
* *
6206418 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGACGGATAGGGGGCCAATATAAGGGCCA
1 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
6206483 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCAATCTCCAGAACCCC
66 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCTCCGGAACCCC
** * ** *
6206548 AATGCTACCGGTCAGGTTCTCCGACGATCCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGC
130 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGC
* * * * *
6206613 ACCAACACATGCCCGAGCCTAGCATGTG-TAGCTGCAACCCTCTGTCTGGTCCGATCGTAGACTG
195 ACCAGCACATGCCCAAGCCCAGCATGTGCT-GCCGCAACCCTCTGTCTGGTCCGATCTTAGACTG
* * * * *
6206677 GGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAACGA
259 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
6206742 GCGTGCGGGTGTTCAGCCGGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGG-CTAGGTCCCCC
324 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-AGGTCCCCC
* * * * * *
6206806 TCTGCGTGCTGCCGATCTTACTGTCGCAACCCTCGGTTC-GCTCCAATCTTAGACTAGGAATGAA
388 TCTGCGTGCTGCCAATCCTACTGCCACAACCCTCGGTTCAG-TCCGATCTTAGACTGGGAATGAA
* * * * *
6206870 CTCCGTGTGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCGGGTACTACACCGGCT
452 CTCCGTATGCCTAAGCCAACCGACGAAACGA---GACGGGCGGGCGGGCGGGCACTACGCCGGCC
* * * * * *
6206935 AGAAAGATGGGATGCGCAAGCCTTAGATCAATAGGGCGGTACGTGGGTTTAGGCACATCCTCATA
514 AGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTACGTGGGTTTAGGCACATCTTCATA
* *
6207000 TTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACC
579 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
6207065 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
644 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-
* * *
6207130 GGGATTTATTAAAATTTTTTTGAAAGGTGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTGTAT
708 GGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGTAT
* * *
6207195 TTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTT
772 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
6207260 GAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTATTGGCAGAAAACCTGCAAAATCTCAA
837 GAAAAAAGTGTCCCCATTTCAGACACTT-AAT-GCTAATGGCAGAAAACCTG-AAAATCTCAA
* *
6207323 ATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCA
1 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
6207387 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT-CGGAACCC
66 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATC-TCCGGAACCC
* * *
6207451 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATTAA-AAGAAATACG
129 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAA-AAATGCG
*
6207515 GCACCAGCACAT-CCTAAGCCCAGCATGTGCTGCCGCAACCCTC-GATC-GGTCCGATCTTAGAC
193 GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCTG-TCTGGTCCGATCTTAGAC
* * * *
6207577 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACACACAAAAT
257 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
6207642 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-TGGGGCATCGGTCAGGTCCT
322 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG-ATCGGTCAGGTCCC
** * * * *
6207706 CCTCTGCGTGCTGCTGATCCTACTGCCACAACCTTCAG-TCTGATCTGATCTTAGACTGGGAATG
386 CCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCGGTTCAG-TCCGATCTTAGACTGGGAATG
* *
6207770 AACTCCGTATGCCTAAGCCAACTGACAAAACGAG-CGGGCGGGCAATCGGGCGGGCACTACGCCG
450 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGG----CGGGCGGGCACTACGCCG
* * * * * * *
6207834 ACCAGAGAGACAGGCTGCGCAAGCCGTGCATCAGTAGGGTGGCAGGTGGGTTTAGGCACATCTTC
511 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTACGTGGGTTTAGGCACATCTTC
6207899 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
576 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
6207964 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGAT
641 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
** *
6208029 TCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGT
706 TCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
* * *
6208094 ATTTTTGTTGGCATGCATAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
770 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
6208159 TTGAAAAAAGTGTCCCCATTTCAGACAC-T--T--TAAT-G--G-----CT----A-CT---
835 TTGAAAAAAGTGTCCCCATTTCAGACACTTAATGCTAATGGCAGAAAACCTGAAAATCTCAA
* * *
6208200 ATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGACCA
1 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
6208265 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCA
66 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCTCCGGAACCCCA
* ** * * * * *
6208329 ATGCCGTCGGTCAGGTTCTCCGGTGATACTCTGACGATGGTGCCTCGGTAAAGAAAAATGCGGCA
131 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCA
* * *
6208394 CCAGTACATGCCCGAA-CCCAGCAAGTGCTACCGCAACCCT-TGGTCTGGTCCGATCTTAGACTG
196 CCAGCACATGCCC-AAGCCCAGCATGTGCTGCCGCAACCCTCT-GTCTGGTCCGATCTTAGACTG
**
6208457 GGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
259 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
6208522 GTGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCGCAAGCCGCGGATCGGTCGGGTCCCACT
324 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCT
* * * * *
6208587 CTCCGTGCTACCAATCCTACTGCCACAACCATAGGTTCAGTCCGATCTTAGAATGGGAATGAACT
389 CTGCGTGCTGCCAATCCTACTGCCACAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACT
* * * * *
6208652 TCGTATCCCAAAGCCAACCGATGAAAC--TA---GCGGGCGGGCGGGCACTACGCCGGCCAGAGA
454 CCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
6208712 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
519 GACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCT
*
6208777 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
584 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
6208816 TTGTAAATTC
Statistics
Matches: 2127, Mismatches: 231, Indels: 112
0.86 0.09 0.05
Matches are distributed among these distances:
870 122 0.06
874 5 0.00
876 82 0.04
877 47 0.02
878 288 0.14
879 6 0.00
880 2 0.00
881 1 0.00
886 2 0.00
891 1 0.00
893 1 0.00
894 3 0.00
897 1 0.00
898 8 0.00
899 4 0.00
900 315 0.15
901 151 0.07
902 440 0.21
903 95 0.04
904 371 0.17
905 181 0.09
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCTCCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCA
CCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCTGTCTGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCT
GCGTGCTGCCAATCCTACTGCCACAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCAATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
TTAAAATTTTTTTGAAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTAATGCTAATGGCAGAAAACCTGAAAATCTCAA
Found at i:6207599 original size:26 final size:26
Alignment explanation
Indices: 6207570--6207622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6207560 TCGGTCCGAT
6207570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6207596 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6207622 C
1 C
6207623 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6208498 original size:26 final size:26
Alignment explanation
Indices: 6208448--6208500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6208438 CTGGTCCGAT
*
6208448 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
6208474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
6208500 C
1 C
6208501 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:6208852 original size:48 final size:49
Alignment explanation
Indices: 6208788--6208882 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 49
6208778 CATGCCAATG
6208788 CCATTTTTATGGCTTGTAAATTCATAC-ATTGTAAATTCATACAATGGT
1 CCATTTTTATGGCTTGTAAATTCATACAATTGTAAATTCATACAATGGT
6208836 CCATTTTTATGGCTTGTAAATTCATACAATTGTAAATTCATACAATG
1 CCATTTTTATGGCTTGTAAATTCATACAATTGTAAATTCATACAATG
6208883 CAATTTTTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 27 0.59
49 19 0.41
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.41
Consensus pattern (49 bp):
CCATTTTTATGGCTTGTAAATTCATACAATTGTAAATTCATACAATGGT
Found at i:6208870 original size:16 final size:16
Alignment explanation
Indices: 6208849--6208881 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6208839 TTTTTATGGC
6208849 TTGTAAATTCATACAA
1 TTGTAAATTCATACAA
6208865 TTGTAAATTCATACAA
1 TTGTAAATTCATACAA
6208881 T
1 T
6208882 GCAATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (16 bp):
TTGTAAATTCATACAA
Found at i:6209063 original size:3 final size:3
Alignment explanation
Indices: 6209040--6209086 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
6209030 AGTTCTATAT
*
6209040 TTA TTA TATA TTA TAA TTTA TTA TTA TTA TTA TTA TT- TT- TTA TTA
1 TTA TTA T-TA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6209085 TT
1 TT
6209087 TTTCTTGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 4 0.10
3 30 0.77
4 5 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6209710 original size:20 final size:20
Alignment explanation
Indices: 6209685--6209730 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6209675 TTTCGAGAAC
6209685 TTCCGACAAAAAAACCCAGA
1 TTCCGACAAAAAAACCCAGA
* *
6209705 TTCCGACGACAAAACCCAGA
1 TTCCGACAAAAAAACCCAGA
*
6209725 ATCCGA
1 TTCCGA
6209731 TGAATCTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.33, G:0.13, T:0.11
Consensus pattern (20 bp):
TTCCGACAAAAAAACCCAGA
Found at i:6210147 original size:17 final size:16
Alignment explanation
Indices: 6210113--6210152 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6210103 TTAGATTAGG
*
6210113 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
6210129 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
6210146 TTTATTT
1 TTTATTT
6210153 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:6210159 original size:17 final size:17
Alignment explanation
Indices: 6210139--6210186 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
6210129 TTTATCTTAA
6210139 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
6210155 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
6210173 TTTCTATTTTTATT
1 TTT-TATTTTTATT
6210187 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:6210186 original size:14 final size:14
Alignment explanation
Indices: 6210139--6210196 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
6210129 TTTATCTTAA
6210139 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
6210151 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
6210165 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
6210180 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
6210194 TTT
1 TTT
6210197 CTTTAAATGA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:6210201 original size:17 final size:17
Alignment explanation
Indices: 6210162--6210201 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
6210152 TTTGTTTTAC
*
6210162 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
6210179 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
6210193 TTTTCTTTA
1 TTTTCTTTA
6210202 AATGAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:6214229 original size:30 final size:30
Alignment explanation
Indices: 6214191--6214249 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
6214181 ATCAACAATG
* * *
6214191 GATGAAAAATGAGAAAAGAGAAA-AAAAAT
1 GATGAAAAAGGAAAAAAAAGAAAGAAAAAT
6214220 GATGAAAAAAGGAAAAAAAAGAAAGAAAAA
1 GATG-AAAAAGGAAAAAAAAGAAAGAAAAA
6214250 AGAAAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 16 0.64
31 5 0.20
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (30 bp):
GATGAAAAAGGAAAAAAAAGAAAGAAAAAT
Found at i:6214243 original size:17 final size:18
Alignment explanation
Indices: 6214223--6214264 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
6214213 AAAAAATGAT
6214223 GAAA-AAAGGAAAAAAAA
1 GAAAGAAAGGAAAAAAAA
6214240 GAAAGAAA--AAAGAAAAA
1 GAAAGAAAGGAAA-AAAAA
6214257 GAAAGAAA
1 GAAAGAAA
6214265 TGAGAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGGAAAAAAAA
Found at i:6214247 original size:13 final size:13
Alignment explanation
Indices: 6214225--6214281 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
6214215 AAAATGATGA
6214225 AAAAAGGAAAAAA-
1 AAAAA-GAAAAAAG
6214238 AAGAAAGAAAAAAG
1 AA-AAAGAAAAAAG
6214252 AAAAAGAAAGAAATG
1 AAAAAGAAA-AAA-G
6214267 AGAAAATGAAAAAAG
1 A-AAAA-GAAAAAAG
6214282 GAATTCAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
13 16 0.42
14 8 0.21
15 3 0.08
16 7 0.18
17 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:6214261 original size:21 final size:20
Alignment explanation
Indices: 6214202--6214280 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 20
6214192 ATGAAAAATG
*
6214202 AGAAAAGAGAAAAAAAATG-A
1 AGAAAAAAGAAAAAAAA-GAA
*
6214222 TGAAAAAAGGAAAAAAAAGAA
1 AGAAAAAA-GAAAAAAAAGAA
6214243 AGAAAAAAGAAAAAGAAAGAA
1 AGAAAAAAGAAAAA-AAAGAA
*
6214264 ATGAGAAAATGAAAAAA
1 A-GA-AAAAAGAAAAAA
6214281 GGAATTCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
20 13 0.26
21 24 0.48
22 3 0.06
23 10 0.20
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (20 bp):
AGAAAAAAGAAAAAAAAGAA
Found at i:6215593 original size:41 final size:41
Alignment explanation
Indices: 6215517--6215855 Score: 525
Period size: 41 Copynumber: 8.1 Consensus size: 41
6215507 ATGATTGTAA
*
6215517 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
6215559 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
** *
6215600 AGGAGCAATTTACTTTTTAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
6215642 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
6215683 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
6215724 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
6215766 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
6215807 AGGAGCAGTTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
6215850 AGGAGC
1 AGGAGC
6215856 TTTGGTAAAA
Statistics
Matches: 278, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
41 154 0.55
42 97 0.35
43 27 0.10
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:6215656 original size:83 final size:82
Alignment explanation
Indices: 6215517--6215855 Score: 534
Period size: 83 Copynumber: 4.1 Consensus size: 82
6215507 ATGATTGTAA
**
6215517 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTA-TTTTTAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
6215582 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
6215600 AGGAGCAATTTACTTTTTAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTA-TTTTTAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
6215665 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
6215683 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGT
1 AGGAGCAATTTATTTTTAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC-AAAGT
6215748 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
6215766 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAGTTTATGTTTCTCAAAG
1 AGGAGCAATTTATTTTTAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAAG
* * *
6215831 TCATTGAGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
6215850 AGGAGC
1 AGGAGC
6215856 TTTGGTAAAA
Statistics
Matches: 240, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
82 43 0.18
83 166 0.69
84 30 0.12
85 1 0.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTATTTTTAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:6215738 original size:124 final size:124
Alignment explanation
Indices: 6215517--6215855 Score: 561
Period size: 124 Copynumber: 2.7 Consensus size: 124
6215507 ATGATTGTAA
* * *
6215517 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
**
6215582 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAAGTCGTAGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
6215642 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
*
6215707 GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
66 GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
*
6215766 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAGTTTATGTTTCTCAAAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAG
* * *
6215831 TCATTGAGCCTCTGTTTAGAGGAGC
64 TCGTGGTGCCTCTGTTTAGAGGAGC
6215856 TTTGGTAAAA
Statistics
Matches: 202, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
124 155 0.77
125 19 0.09
126 28 0.14
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (124 bp):
AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
Found at i:6215868 original size:1 final size:1
Alignment explanation
Indices: 6215862--6215916 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
6215852 GAGCTTTGGT
* * * * * *
6215862 AAAAAAAAAAAAAAAAAAAACAAAAAACACAAAAAAACACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6215917 TGACAATGTT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6215922 original size:19 final size:19
Alignment explanation
Indices: 6215864--6215916 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
6215854 GCTTTGGTAA
*
6215864 AAAAAAAAAAAAAAAAAAC
1 AAAAAAAACAAAAAAAAAC
* *
6215883 AAAAAACACAAAAAAACAC
1 AAAAAAAACAAAAAAAAAC
6215902 AAAAAAAACAAAAAA
1 AAAAAAAACAAAAAA
6215917 TGACAATGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAAACAAAAAAAAAC
Found at i:6216154 original size:24 final size:23
Alignment explanation
Indices: 6216114--6216274 Score: 74
Period size: 23 Copynumber: 6.9 Consensus size: 23
6216104 TTTTCTTTTG
*
6216114 TATT-TTATGATTTTATTATTTAT
1 TATTATTAT-ATTATATTATTTAT
6216137 TATTATTATATGTATATT-TTTACT
1 TATTATTATAT-TATATTATTTA-T
6216161 TA-T-TTAT-TTAT-TTATTTATT
1 TATTATTATATTATATTATTTA-T
* * *
6216181 TATTTTTCTGTTA-A-TATTTA-
1 TATTATTATATTATATTATTTAT
* *
6216201 TATGTATTTTATTTATATAATTCTA-
1 TAT-TATTATA-TTATATTATT-TAT
6216226 TATTTATTATATATTATAATTTATTTAT
1 TA-TTA-T-TATATTAT-A-TTATTTAT
6216254 TATTATTAT-TTATTATTATTT
1 TATTATTATATTA-TATTATTT
6216275 TTCTTGTAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 40
0.69 0.06 0.25
Matches are distributed among these distances:
19 2 0.02
20 13 0.12
21 6 0.06
22 16 0.15
23 21 0.19
24 19 0.17
25 10 0.09
26 7 0.06
27 9 0.08
28 6 0.06
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
TATTATTATATTATATTATTTAT
Found at i:6216169 original size:4 final size:4
Alignment explanation
Indices: 6216125--6216267 Score: 61
Period size: 4 Copynumber: 35.5 Consensus size: 4
6216115 ATTTTATGAT
* *
6216125 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* *
6216171 TTTA TTTA TTTA TTT- TTCTG TTAATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA TT-TA TT--TA TTTA T-T-TA -TTTA TTTA TTTA
* * * *
6216220 ATTC TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA TTTA
1 TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
6216266 TT
1 TT
6216268 ATTATTTTTC
Statistics
Matches: 108, Mismatches: 16, Indels: 30
0.70 0.10 0.19
Matches are distributed among these distances:
3 24 0.22
4 62 0.57
5 14 0.13
6 7 0.06
7 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:6216229 original size:21 final size:17
Alignment explanation
Indices: 6216129--6216267 Score: 71
Period size: 16 Copynumber: 8.3 Consensus size: 17
6216119 TATGATTTTA
6216129 TTATTTAT-TATTAT-T
1 TTATTTATATATTATAT
* * * *
6216144 ATATGTATAT-TTTTAC
1 TTATTTATATATTATAT
*
6216160 TTATTTATTTATT-TAT
1 TTATTTATATATTATAT
* * *
6216176 TTATTTAT-TTTTCTGT
1 TTATTTATATATTATAT
*
6216192 TAATATTTATAT-GTAT-T
1 T--TATTTATATATTATAT
6216209 TTATTTATATAATTCTATAT
1 TTATTTATAT-A-T-TATAT
6216229 TTA-TTATATATTATAAT
1 TTATTTATATATTAT-AT
6216246 TTATTTAT-TATTATTAT
1 TTATTTATATATTA-TAT
6216263 TTATT
1 TTATT
6216268 ATTATTTTTC
Statistics
Matches: 96, Mismatches: 13, Indels: 28
0.70 0.09 0.20
Matches are distributed among these distances:
15 21 0.22
16 24 0.25
17 22 0.23
18 15 0.16
19 10 0.10
20 4 0.04
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
TTATTTATATATTATAT
Found at i:6216236 original size:17 final size:17
Alignment explanation
Indices: 6216210--6216269 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
6216200 ATATGTATTT
*
6216210 TATTTA-TATAATTCTA
1 TATTTATTATAATTATA
6216226 TATTTATTATATATTATA
1 TATTTATTATA-ATTATA
*
6216244 -ATTTATTTATTATTAT-
1 TATTTA-TTATAATTATA
6216260 TATTTATTAT
1 TATTTATTAT
6216270 TATTTTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 10 0.26
17 19 0.50
18 9 0.24
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTATTATAATTATA
Found at i:6216264 original size:65 final size:65
Alignment explanation
Indices: 6216126--6216275 Score: 164
Period size: 65 Copynumber: 2.3 Consensus size: 65
6216116 TTTTATGATT
* ** * * *
6216126 TTATTATTTATTATTATTATATGTATATTTTTACTTATTTATTTATTTATTTATTTATTTTTCTG
1 TTATTATTTATTATTATTTTATGTATATAATTACTTATTTATTTATTTATTAATTTATTTATCTA
* *
6216191 TTAATATTTA-TATGTATTTTATTTATATAATT-CTATATTTATTATATATTA-TAATTTATTTA
1 TTATTATTTATTAT-TATTTTATGTATATAATTACT-TATTTATT-TAT-TTATTAATTTATTTA
6216253 T-TA
62 TCTA
6216256 TTATTATTTATTATTATTTT
1 TTATTATTTATTATTATTTT
6216276 TCTTGTAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
64 5 0.07
65 47 0.66
66 16 0.23
67 3 0.04
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (65 bp):
TTATTATTTATTATTATTTTATGTATATAATTACTTATTTATTTATTTATTAATTTATTTATCTA
Found at i:6217223 original size:17 final size:16
Alignment explanation
Indices: 6217189--6217228 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6217179 TTAGATTAGG
*
6217189 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
6217205 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
6217222 TTTATTT
1 TTTATTT
6217229 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:6217262 original size:14 final size:14
Alignment explanation
Indices: 6217215--6217272 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
6217205 TTTATCTTAA
6217215 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
6217227 TTTTGTTTTACTGT
1 TTTTATTTTTCTAT
6217241 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
6217256 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
6217270 TTT
1 TTT
6217273 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:6217445 original size:60 final size:59
Alignment explanation
Indices: 6217280--6217575 Score: 418
Period size: 59 Copynumber: 5.0 Consensus size: 59
6217270 TTTCTTTAAA
*
6217280 TAAAAATAAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
***
6217341 TAAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
6217400 TGGAAATAAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
6217460 TAAAAATAAA-TTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
6217518 TAAAAATAAATTTTCAGAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
6217576 CTACACAAGA
Statistics
Matches: 212, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
58 55 0.26
59 97 0.46
60 53 0.25
61 7 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.34
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:6217457 original size:28 final size:28
Alignment explanation
Indices: 6217366--6217457 Score: 71
Period size: 28 Copynumber: 3.1 Consensus size: 28
6217356 AAAAAAAGGG
6217366 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
** * **
6217394 TTTCCTTGGAAATAAAAGTTTCAAA--AAAAAT
1 TTT--TT-G-AGGAAAAG-TTGAAAGTATCAAT
6217425 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
6217454 TTTT
1 TTTT
6217458 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
27 5 0.11
28 13 0.28
29 5 0.11
30 4 0.09
31 5 0.11
32 9 0.20
33 5 0.11
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:6218204 original size:26 final size:26
Alignment explanation
Indices: 6218168--6218220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6218158 CCGATCCGAT
*
6218168 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6218194 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6218220 C
1 C
6218221 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6221139 original size:26 final size:26
Alignment explanation
Indices: 6221099--6221151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6221089 GTTGACTTAG
*
6221099 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
*
6221125 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
6221151 G
1 G
6221152 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTCTAA
Found at i:6222017 original size:26 final size:26
Alignment explanation
Indices: 6221988--6222040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6221978 GTTGACTTAG
* *
6221988 GCATACGAATTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
6222014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6222040 G
1 G
6222041 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6222930 original size:26 final size:26
Alignment explanation
Indices: 6222894--6222946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6222884 GTTGACTTAG
6222894 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
6222920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
6222946 G
1 G
6222947 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:6223341 original size:900 final size:900
Alignment explanation
Indices: 6220218--6225584 Score: 6732
Period size: 900 Copynumber: 6.0 Consensus size: 900
6220208 TTGGCTTAGA
* * * *
6220218 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
6220283 TCAGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * *** * * *
6220348 CTTGACCCGCAATATTAGGGTTCCGACGATCAAGGGGGTCGGGGGGGTGTGCACACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGG-CCGGGGGGTGTGCGCACATGATGTGC
*
6220413 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
6220478 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
6220543 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6220608 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCAAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
6220673 TTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
6220738 CCATGAAACTTCACGTGATGGCTTAAGGGACCATTTTATTAATTTAAAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
6220803 TGGCCTGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGG
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** *
6220868 ATCCCATCTCTCAGGCCGGTGTAGTGCCCGCTCGCCCGCCCGCCCATCCGCTCA-TTTCGTCAGA
648 ATCCCGTCTCTCTGGCCGGCGTAGTG--C-CT-GCCCGCCCGCCCGCCCGCT-AGTTTCGTCAGT
* * * * *
6220932 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAACCAAACTGAGGGTTA-CGATAGC
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGG-TAGTGGTAGC
* * * * ** * * * * **
6220995 AGGATCGGTAGCACACAGAGGGGGACACGGTCGATCCTCAGCTTGCGCATCCCGCCCTTCTAACC
771 AGGAT-TGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCCGCCCTTCTGGCC
* *
6221060 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
835 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
6221125 G
900 G
* * ** * *
6221126 CATACGGAGCTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** ** * *
6221191 ACGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGAAGCACCATCGCCAGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * *
6221256 CCTGACCGGCGGCATTAGGGTTCTGATGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
6221321 ATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
6221386 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-TCGAAATG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATG
** * * *
6221450 GGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
6221515 GCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGTGGCCAAAAAT-CTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
6221579 TTTAAAAAAAT-CCTATACCGCAAAAAGCTTT-GAAAATCATGAAAAATAGAAAATGAGTCATCT
453 TTTTAAAAAATCCCGA-ACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
** * * *
6221642 CACCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACGAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
6221707 ATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTAC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
6221772 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACCCTCCCGCTCGTTTCGTCAGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGG
* * * *
6221837 CTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGAACAG-CCGA--G--G-GCTA-C--G--
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAGTGGTAGCAGGAT
** * *
6221891 -GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGTTGA
776 TGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCCGCCCTTCTGGCCGGCTGA
* * * * * * *
6221955 GCGACCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAATTTCATTCCTAGTCTAAG
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
6222015 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTTCGGCAACACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * * * *
6222080 TTGATCATGTGCTGGTGCCACATTTTTCTTCGTCGAGACACCATCGCCGAAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* *
6222145 CCTGACTGGCGGCATTGGGGTTCC-AGCGATCGAGGGGGCCGAGGGCGGGGTGTGGGCACATGAT
131 CCTGACCGGCGGCATTGGGGTTCCGA-CGATC--GGGGGCC---GG-GGGGTGTGCGCACATGAT
6222209 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
6222274 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCCGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * * *
6222339 AATGGGGACACTTTTTTCAAATGGTCACAAAAAGTTGTATAGTTCGAGTTTTTAGCTGAATATTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
6222404 TTGTGCATGCCAA-AAAATATAAAAGGATGACGTCTACCATGTTTGGGGCCAAAACTGCTTTCGA
384 TTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
6222468 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
448 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
6222533 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * **
6222598 GGCATTGGCATGCAGAAATATGAAGATGTGCCTCAATCCACTTACCACCCTATCGATCCTTGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
6222663 TGCGCATCCCGTCGCTCTGACCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGT
* * *
6222728 TGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAGGGTAGTGGTAGCAA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAGTGGTAGCAG
** * * * **
6222793 GATTGCAGCACATAGAGGGGGACCCGACCGATCCCCGGTTTGGGCATTCCGCCCTTCTGGCTGAA
773 GATTGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCCGCCCTTCTGGCCGGC
* *
6222858 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAG
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * *
6222921 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGACTGAGGGTTGCAGCAGCATATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
6222986 TTGGGCACGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-TCGCCTGAGCATCACCGGATAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * *
6223050 CCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGACCAGGGGGTGTGCGCACATGATGTGTGA
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGA
* * *
6223115 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
6223180 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
6223245 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
6223310 ATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTT-GGGCCAAAACTCCTTTCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
6223374 TTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCAT-TAAAATAGAAAACAAGTCGTCTTGCC
455 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
6223438 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCACTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
6223503 GCATGC-GAGAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCA
585 GCATGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
6223567 TCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCACGCTAGTTTCGTCAATTGGCTT
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGGCTT
* * * *
6223632 AGCCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACTGAGGGTTGCT-GTAGCAGGATT
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTAG-TGGTAGCAGGATT
* * * * * * *
6223695 GGCAGCATGCAGAGGGGGACCCGACCGATCCTCGACTTGCGAAATCCTGCCCCTT-TGGCCGACT
777 -GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCC-G-CCCTTCTGGCCGGCT
* * *
6223759 GAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
6223821 CATACGTAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGTGGCTA-CACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC-AGCACATGCTGGG
* * * * * **
6223885 CTCGGGCATGTCCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAATCGCCGTTGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
6223950 ACCTGACCGGCGACATTGGGGTTCCGACGATCGAGAGGGCCGGGAGGGTGTGCGGACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-G-GGGCCGGG-GGGTGTGCGCACATGATGTG
*
6224015 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
6224080 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
6224145 AGGGACACTTTTTTC-AA---T-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
6224205 TGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGCTTGGAGCCAAAACTCCTTCCGAAGAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * * * *
6224270 ATTTTAAAAAATCCTGAACCACAAAATGTTTCCAAAACCATGAAAAATAAAAAATGAGTTGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
6224335 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
6224400 TTGGCACGTAGAAATATGAAGATGTGACTAAACCAACCTACCACCCTATCTATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
6224465 CATCCCGTCTCTCTGGCCAGCGTA--G--TGCCCGCCCACCAG--CTC-A-TTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGGC
* * * *
6224522 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAGTGGTAGCAGGAT-
* * ** * * * * *
6224587 GGTAGCACGCA-ATGGGGGACCCGGTCGGTCCACAGCTTGTGCA-TCCTGCCCTTTTGGCCGGTT
776 TGCAGCACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGTGCATTCC-GCCCTTCTGGCCGGCT
** * ** *
6224650 GAGCGCCCGCACGCTTATTTCATTAGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAG
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * **
6224712 CATATGGAGTTCATTCCCTA-TCTAAGATCGGATCAGACCGAGGGTTACGATAGCACATGCTGGG
1 CATACGGAGTTCATTCCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
6224776 CTCGAGCATATGCT-GTAGCCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
6224840 AACTTGACCGACGGCATTGGGGTTCCGACGATCAGGGGCCGGGGGGTGTGCGCACATGATGTACG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
6224905 ATTGGTGCTGGTACTTGGCCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 ATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
6224970 CCTCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTATCAGTAGCCATTAAAGTGTCTGGAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
6225034 GGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
6225099 GCATGCCAACAGAAATACAAAGATCACGTTTACCATGTTTGGGGCCAAAA---C-T-C------A
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
6225153 ---T------T-CCG-A----AAAAAGTTT--AAAACCGTGAAAAATAGAAAACGAGTCATCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
6225201 CCATGAAACTTCACGTGAAGGCTTAAGCGACAATTGTATGAATTTACAAGCCATAAATATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
6225266 TGGCACGCAGAAATATAAAGATATGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
6225331 ATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCACCCGTCGGCCCGCTCGTTTGGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGGCT
* * * * * *
6225396 TAGGTACACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGTTTA-TGGTAGTAGGAT
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGG-GTAGTGGTAGCAGGAT
* * * * * * *
6225459 TGGTAGCACGCAGAAGGGGACCCAACTGATCCCCGACTTGTGCA-ACCCCCCTCCTCTGGCCGGC
776 T-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCCGCCCT--TCTGGCCGGC
*
6225523 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
6225585 AATCGGATTG
Statistics
Matches: 3895, Mismatches: 491, Indels: 180
0.85 0.11 0.04
Matches are distributed among these distances:
865 171 0.04
867 9 0.00
869 10 0.00
871 3 0.00
872 6 0.00
873 98 0.03
874 65 0.02
879 1 0.00
882 1 0.00
888 88 0.02
889 331 0.08
890 10 0.00
891 199 0.05
892 105 0.03
893 329 0.08
894 273 0.07
895 7 0.00
896 13 0.00
897 4 0.00
898 328 0.08
899 157 0.04
900 550 0.14
901 62 0.02
902 69 0.02
903 168 0.04
904 3 0.00
905 47 0.01
906 396 0.10
907 255 0.07
908 137 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTAGTTTCGTCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAGTGGTAGCAGGATTGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCCGCCCTTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:6223831 original size:26 final size:26
Alignment explanation
Indices: 6223794--6223846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6223784 GTTGACTTAG
6223794 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
6223820 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6223846 G
1 G
6223847 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6231146 original size:26 final size:26
Alignment explanation
Indices: 6231117--6231169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6231107 GTTGACTTAG
*
6231117 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
6231143 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
6231169 G
1 G
6231170 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:6232734 original size:26 final size:26
Alignment explanation
Indices: 6232698--6232750 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6232688 GTTGACTTAG
*
6232698 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
6232724 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
6232750 G
1 G
6232751 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:6233639 original size:26 final size:26
Alignment explanation
Indices: 6233603--6233655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6233593 GTTGACTTAG
6233603 GCATACGGAGTTAATTC-CTAGTCTAA
1 GCATACGGAGTTAATTCTC-AGTCTAA
*
6233629 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCTCAGTCTAA
6233655 G
1 G
6233656 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCTCAGTCTAA
Found at i:6234220 original size:901 final size:897
Alignment explanation
Indices: 6232500--6237752 Score: 6094
Period size: 905 Copynumber: 5.9 Consensus size: 897
6232490 TACGCATCCC
* * * ** *
6232500 GCCCTCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
6232565 GATCAGACCAGACATAGGGTTGTGGCAACAAGATCGGTAGCACGCAG-AGGAGGACCAGGCCGAT
66 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGG-GGACCCGGCCGAT
* * * * * *
6232629 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCACACACACTCGTTTCGTGGGTTGAC
130 CCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
6232694 TTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C
* * * * * * **
6232759 AGATCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTT
259 TGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * ** * * *
6232824 AGAGTACCATCGTTGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTTC-AGTGATCGG
324 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTTCGA-CGATCGG
* *
6232888 GTGGGCCGGGGGTTGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATAT
387 G-GGG-C--TGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
6232953 TGGCCTCCTATCCCTCATCATACCTTGAGAACTAACACCCCCTT-AAGAGCATTTGAGATTTTAC
446 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
6233017 AGGTTTGCTACCAGTAACCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAA
511 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
6233081 ATGTTGCACACTTCGAGTTTTTAGCTGACTTTTTTTTGTGCATGCCAACAAAAATACAAGGATTA
575 ATCTTGTACACTTCGAGTTTTTAGATGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
6233146 CGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAA
639 CGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * * *
6233211 ATTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAA
704 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
6233276 GGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAAAAATATGAAGATGTGC
769 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * *
6233341 CCAAACCCACCTACCACCCTATCGATTCACGGCTTGCATATCCCGTCTCTCTGGCCGGCGTAGT
834 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGT
*
6233405 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
6233470 GATC-GAACCAGACCGAGGGTTACGGTAGCAGGATCAGTAGCACACAGAAGGGGACCCGGTCGAT
66 GATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGGGACCCGGCCGAT
* * ** *
6233534 CCCCGGCTTGCGCATTCCGCCCCTCTAGCCGGCAGAATGCCCGCACACTCGTTTCGTGGGTTGAC
130 CCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
6233599 TTAGGCATACGGAGTTAATTCCTAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACT
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * *
6233664 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGCC
260 -GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
*
6233729 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGG
324 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTTCGACGATCGGG
*
6233794 GGTGCTGGGGGGGCTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
388 GG-GCTGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
6233859 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
451 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
6233924 TGCTGCCAGTAGCTATTAAAGTGT-TCGAAATGGGGAAACGTTTTTCAAATGGTCACAAAATCTT
516 TGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
6233988 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCAAGTCTA
580 GTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * **
6234053 CCAAGTTTGGGGCCAAAACACCTTCTGAAAACATTTTAAAAAATCTAGAACCGCAAAAATTTTTG
645 CCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* *
6234118 AAAATCATGAAAAATAGAAAACGAGTCTTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
710 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
6234183 ATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAACC
775 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * **
6234248 CCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCAACATAGT
840 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGT
* * * * *
6234306 ----GCCCGCCCGCCTGCTCGTTTCGTCGGTTGCCTTAGGCATATGAAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
6234367 GATCGGACCGGACCG-GAGGTTGTGGTAGCAGGATTGGCAACACACAGAGGGGGACCCGACTGAT
66 GATCAGACCAGACCGAG-GGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGGGACCCGGCCGAT
* * * *
6234431 CCCCGGCTTCCGCA-TCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
130 CCCCGGCTTGCGCATTC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * **
6234495 CTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGAC
194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-
* ** * * * * *
6234560 CGGACAAAGGTTTACGACAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCGCATTTTTCTTCGT
258 CTGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* ** * * *
6234625 CGGGGCAACATC-ATGGAGCATCGCCGGAGAACCTGACCGACGGCATTGATGTTTCGGCGATCGG
323 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG-GGTTTCGACGATCGG
** *
6234689 GGGGC-CAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
387 GGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
6234753 CTTATCCCTCATCAAACCTCGAGAACTCACTCGCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
452 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
6234818 GCTGCCTGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATTTTGT
517 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
6234883 ACACTCCAAGTTTTGAAATGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCT---
582 ACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** **
6234945 AAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAACCCTCGAAATGCAAAAAGTTTCAAA
647 AAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
*
6235010 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
712 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * * *
6235075 TGTATGAATGTAGAAGCCATAAAAATGGCATTGTCATGTAGAAATATGAAGATGTGCCTACACCC
777 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* **
6235140 ACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGGTGTAGT
842 ACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGT
* * *
6235196 CCCCGCCCGTCCGCCCGTTCGTTTCGTC-AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *** ** * * *
6235260 AGATCAGACC-GAACCAAGGCTTGC-GTATCCCGCCCCTCTGGC-CGACTG-A-GCG-CCC-G-C
65 AGATCAGACCAG-ACCGAGGGTTGCGGTA-GCAGGATCGGTAGCAC-ACAGAAGGGGACCCGGCC
* * **** * * * * * ***
6235317 -A----C-GC-T---CATT----TCATC-GGTTAACTTAG-GCATACGGA-GTTC-ATTC-CCAG
127 GATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGG
* *
6235363 -T--C-TAAGCATATGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC---G---
190 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
6235404 -GAC--A--GAGGTTTATGGCAGCACATGCTGGACTCGGGCATGTGCTGGTGACACATTTTTCTT
255 AGACTGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * * *
6235464 TGCCGGGGCACCATCACAAGAGCATCGCCGAAGAACCTGACCGG-GCGTATTAAGGTTTCGACGA
320 CGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG-GCATT-GGGTTTCGACGA
* * *
6235528 TCGGGGGGCCGGGGGGGATGTACGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
383 TCGGGGGGCTGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
6235593 GGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACA
447 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
6235658 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
512 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
6235723 CTTGTACACTTCGAGTTTTTAAATGAA-TTTTTTGTGCAAGCCAACAAATATACAAGGATCACGT
577 CTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * * *
6235787 CT---AAGTTTAGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTT
642 CTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
* *
6235849 TCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
707 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** * *
6235914 ATCATTGTATGAATTTA-GTGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
772 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
6235978 AACCCACCTACCACCTTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGACATAGT
837 AACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGT
* *
6236039 GCCCGCCAGCCCACCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
1 G--C-CC-G----CCCGCCCG--C--CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * *** * * * *
6236104 TTCCCAGTCTAAGATCGGACCGGACCGAAAATTGCTGCAGCAGGATCGGTAGTACGCA-AAGGGT
54 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGG-
** * * * * *
6236168 GACCCGATCGATCCCCGGCTTGCGTATTCCGCCCCTCTGGCCGGATGAGTGCCCACACGCTCATT
118 GACCCGGCCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
6236233 TCGTCGGTTGACCTAGACATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
183 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
6236298 TAAGATCAGACCTGACAGAGGTTTACGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCA
248 TAAGATCAGA-CTGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
6236363 TATTTCTTCGCCGGGGCACCATCGCGGGAGCATCACAGGAGAACCTGACTGGCGGCATTGAGGTT
312 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG-GGTT
* * * * * *
6236428 TCGGCGATCAGGGGGC-CGAGGGGTTTGCGCAGATGATGTGC-AGTGGGTGCTGGTACTTGGCCC
376 TCGACGATCGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCC
*
6236491 TTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
440 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
6236556 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
505 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * * *
6236621 ACAAAATCGTGTACGCTTCGCGTTTTTAGATGAAATTTTTTGTGTATGCCAAAAAAAATACAAGG
570 ACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
6236686 ATCACGTCTACCAAGTTTGGGGACAAAATCA--TTCCAAAAAAATTTTAAAAAATCTCGAACCCC
635 ATCACGTCTACCAAGTTTGGGGCCAAAA-CACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC
* * *
6236749 AAAAAGTTTCCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAG
699 AAAAAGTTT-CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * **
6236814 GCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGTGG
763 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
6236879 ATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGGC
828 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
6236943 ATAGT
893 ATAGT
* * * * * *
6236948 ACCCGGCCGCCCACCCGCTCGTTTCGTCGATTGTCTTAGGCATACGGAGATCATTCCCAATCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
6237013 GATCAGACCAGATCAAGGGTTGCGGTAGCAGAATTGGTAACACATAGAGGGGGACATGGCCGATC
66 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGGGACCCGGCCGATC
* * * * *
6237078 CTCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACT
131 CCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
6237143 TAGGCATACGGAGTTCATTCCCTGTCTAAG-AT-C-G-G---A-T--C-G-----GAT----C--
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
* * * * * * **
6237186 A---AGGGTTGCAGCAGCACATTCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTTGTTGG
261 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * ** * * *
6237248 GGAACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCTTCATTAGGGTTCCGGCGATCAAGGG
326 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTTCGACGATC-GGGG
* *
6237313 TGCTGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
389 GGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
6237378 TATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGC
454 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
6237443 TACGAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
519 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* **
6237508 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAA-GATCACACCTACCA
584 ACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCA
* * **
6237571 AGTTT-GGGCCAAAA-ATCCTTCCTAAAAAATTTAAAAAAATC-CTGAACCATAAAAAGTTTCAA
648 AGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAA
6237633 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
711 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
6237698 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAATATGAAGAT
776 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG-AAATATGAAGAT
6237753 CAGACCGGAC
Statistics
Matches: 3718, Mismatches: 506, Indels: 281
0.83 0.11 0.06
Matches are distributed among these distances:
842 61 0.02
843 143 0.04
844 173 0.05
845 191 0.05
846 3 0.00
847 3 0.00
851 8 0.00
853 1 0.00
854 2 0.00
855 71 0.02
856 5 0.00
857 1 0.00
858 3 0.00
860 1 0.00
861 1 0.00
864 2 0.00
865 1 0.00
866 2 0.00
867 3 0.00
868 27 0.01
869 2 0.00
870 3 0.00
871 215 0.06
872 70 0.02
873 223 0.06
874 19 0.01
875 14 0.00
876 6 0.00
877 2 0.00
878 1 0.00
879 2 0.00
880 2 0.00
881 30 0.01
882 3 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 222 0.06
891 3 0.00
892 2 0.00
893 228 0.06
894 82 0.02
895 6 0.00
896 52 0.01
897 445 0.12
898 7 0.00
899 1 0.00
900 5 0.00
901 353 0.09
902 104 0.03
903 2 0.00
904 6 0.00
905 520 0.14
906 46 0.01
907 109 0.03
908 37 0.01
909 113 0.03
910 72 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAAGGGGACCCGGCCGATC
CCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGG
CTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGT
Found at i:6234530 original size:26 final size:26
Alignment explanation
Indices: 6234500--6234552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6234490 GTTGACTTAG
6234500 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
6234526 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
6234552 G
1 G
6234553 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:6235372 original size:26 final size:26
Alignment explanation
Indices: 6235342--6235394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6235332 GTTAACTTAG
6235342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6235368 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6235394 G
1 G
6235395 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6236286 original size:26 final size:26
Alignment explanation
Indices: 6236250--6236301 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6236240 TTGACCTAGA
6236250 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
6236276 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
6236302 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:6238986 original size:31 final size:31
Alignment explanation
Indices: 6238948--6239012 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
6238938 TGAAATGGGG
6238948 ACATTTTTTTCAAATGGTCACAAAATCTTGT
1 ACATTTTTTTCAAATGGTCACAAAATCTTGT
6238979 ACATTTTTTTCAAATGGTCACAAAATCTTGT
1 ACATTTTTTTCAAATGGTCACAAAATCTTGT
6239010 ACA
1 ACA
6239013 CTTTGAGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (31 bp):
ACATTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:6239237 original size:746 final size:708
Alignment explanation
Indices: 6237914--6240100 Score: 2442
Period size: 704 Copynumber: 3.0 Consensus size: 708
6237904 TCTAAGTGTT
* * * * * * *
6237914 CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGTGTTGCGACAGGACATGCTGGGCTCGG
1 CAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACA-GACAGGATGAGCTAGG
* * * *** ** * * * * * *
6237979 GCAAGTGTCGGTG--CCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCTGGAGAACT
65 ACATGAG-CGG-GACCCGCATCGATCCCCGACGAGGCACCATCGTCGGAGCATCCCCGGAGAACC
* ** * * * * *
6238042 TGACCGGCGGCATTTG-GGTTTCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGGT
128 TAACTAGCGACA-TTGAGGTTCCGACGATCGGGGGCCCGGGGGGTGTGAGCACATGATGTGCGAT
* *
6238105 GGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCC
* * * * * * *
6238170 CCTCAAAAAGCATTTGAGATTTCACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGG
* *
6238235 ACAC-TTTTTCAAATGGTCAC-CAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCA
*
6238298 TGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAAAT
386 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-G-AAAAAAT
* * *
6238362 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGG
449 TTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
**
6238427 CATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAGGA-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
6238492 GGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
578 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
6238557 TCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTTATCGGTTGGCTT
643 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG--CG--C-AC-GCTCGTTTCATCGGTTGACTT
*
6238622 AGGCATA
702 AAGCATA
* *
6238629 CAGAGTTCATTCCCAGTCTAAGATCGGACC-AACCCGAGGGTTGCGATAG-TAGGATCG-GC-AG
1 CAGAGTTCATTCCCAGTCTAAGATCGGACCGAA-CCGAGGGTTGCGACAGACAGGAT-GAGCTAG
* * * * *
6238690 TACATCGAGGGGGACCCG-ATCGATCCCCGACTTATGCACCATCGTCGGAGCATCGCCGGAGAAC
64 GACAT-GAGCGGGACCCGCATCGATCCCCGAC-GAGGCACCATCGTCGGAGCATCCCCGGAGAAC
* * *
6238754 CTAACTAGCGGCATTGAGGTTCCGACGATCGGGGGCCCTGGGGGTGTGCGCACATGATGTGCGAT
127 CTAACTAGCGACATTGAGGTTCCGACGATCGGGGGCCCGGGGGGTGTGAGCACATGATGTGCGAT
*
6238819 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTC-AGATCTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCC
* *
6238883 CCTTAAAGAGCATTTGAGCTTTTTCAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAAT--GG
6238948 ACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTTTTTCAAATGGTCACAAAATCTTGTACA
320 ---------------GG-------A-C----AC--TTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
6239013 CTTTGAGGTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACTGA
356 CTTTGAGTTTTTAGCTGAA-TTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
6239078 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTCTAACCGCAAAAAGTTTTAAAAA
419 GTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAA
* * *
6239143 TCAGTGAAAAATAAAAAACGAGTGGTCTTGCCACGAAACTTAACGTGAA-GCTTGAGGAACCATT
484 TCA-TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGGAACCATT
*
6239207 GTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
547 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
6239272 CCTACCACCCTATCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGTCGTC-TGAGTGCCT-----
612 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCTGCCCG
* *
6239331 -GCACGCTCGTTTCGTGGGTTGACTTAAGCATA
676 CGCACGCTCGTTTCATCGGTTGACTTAAGCATA
* * * * * *
6239363 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGCAGCACATGATGAGCTCGG
1 CAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAG-ACAGGATGAGCTAGG
* * * ** *** ** * * *
6239428 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCCGGAGAACTTA
65 ACATGAGCGGGACCCGCATCGATCCCCGACGAGGCACCATCGTCGGAGCATCCCCGGAGAACCTA
* * * * * *
6239493 ACTGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGAGTACATGATGTGCGGTGGG
130 ACTAGCGACATTGAGGTTCCGACGATCGGGGGCCCGGGGGGTGTGAGCACATGATGTGCGATGGG
* * *
6239558 TGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
6239623 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
*
6239688 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTTTTTGCATGCC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCATGCC
* *
6239753 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
* * *
6239818 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* * *
6239883 ACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATG
520 ACTTCACGTGAAGGCTT-AGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
6239948 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCGACGGCTTGTGCATCCCGT
584 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
6240013 CTTTCTGGCCGGCGTAGTGCCCG-CC-CGCTCGCTCGTTTCGTCAGG-TGGCTTAGGCATA
649 CTCTCTGGCCGGCGTAGTGCCTGCCCGCGCACGCTCGTTTCATC-GGTTGACTTAAGCATA
** * *
6240071 TGGAGTTCAATCCCAGTCTAAGATCAGACC
1 CAGAGTTCATTCCCAGTCTAAGATCGGACC
6240101 AGACCAAGGG
Statistics
Matches: 1249, Mismatches: 163, Indels: 127
0.81 0.11 0.08
Matches are distributed among these distances:
703 41 0.03
704 215 0.17
705 8 0.01
706 47 0.04
708 54 0.04
709 2 0.00
711 1 0.00
712 16 0.01
713 130 0.10
714 77 0.06
715 44 0.04
720 2 0.00
730 2 0.00
734 65 0.05
735 5 0.00
736 146 0.12
737 80 0.06
738 2 0.00
742 2 0.00
745 17 0.01
746 190 0.15
747 102 0.08
748 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
CAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGACAGGATGAGCTAGGA
CATGAGCGGGACCCGCATCGATCCCCGACGAGGCACCATCGTCGGAGCATCCCCGGAGAACCTAA
CTAGCGACATTGAGGTTCCGACGATCGGGGGCCCGGGGGGTGTGAGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAA
AATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCTGCCCGCGCACGCTCGTTTCATCGGTTGACTTAAGCATA
Found at i:6242038 original size:26 final size:26
Alignment explanation
Indices: 6242001--6242060 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
6241991 GTTGCCTTAG
6242001 GCATAC-GAACTTCATTCCCAGTCTAA
1 GCATACAG-ACTTCATTCCCAGTCTAA
*
6242027 GCATACAGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
6242053 -CAT-CAGAC
1 GCATACAGAC
6242061 CAGATCGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 3 0.09
26 23 0.72
27 1 0.03
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:6242934 original size:26 final size:26
Alignment explanation
Indices: 6242905--6242957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6242895 GTTGACTTAG
6242905 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
6242931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
6242957 G
1 G
6242958 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:6243186 original size:904 final size:901
Alignment explanation
Indices: 6239355--6243888 Score: 5609
Period size: 904 Copynumber: 5.0 Consensus size: 901
6239345 TGGGTTGACT
* * * * * * *
6239355 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGCAGCACATGAT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCT
* * * * **
6239420 GAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCCGG
66 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCG-CGGAGCATCGTCGG
* * * * * * *
6239485 AGAACTTAACTGGCGACATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGAGTACATGAT
130 AGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGAT
* * *
6239548 GTGCGGTGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
6239613 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
6239678 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAAT-TTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATATTT
* * * *
6239742 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTCCGAA
389 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** * *
6239807 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAGTCGT
454 AAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
6239872 CTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
* * * *
6239937 GAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCGACGGCTT
584 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
6240002 GTGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCG--C-T-CG----CTCGTTTCGTCAGG-
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGTC-GGT
* * ** * * * * * **
6240058 TGGCTTAGGCATATGGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGC-G
713 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCTG
* * * * * *
6240122 AGATCGGCAGCACGCAGAGAGGGACCC-GGCTAATCCTCGGCTTGCGCATCCCGCCCCTTTGGTC
778 -GATCGACAGCACGCAGAG-GGGACCCAGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
6240186 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
840 GGCTGAGCACCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
* * ** *
6240248 GAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGC-GACAGCACATGC
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAG-CAGCACATGC
*** * ** *
6240312 TGGGCTCGGGCATGTGCTGGTGCAACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCG
65 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCG-CGGAGCATCGTCG
* * * * * * *
6240377 GAGAACCTGACCGACGGCGTTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGAAAATGA
129 GAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
* *
6240442 TGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
*
6240507 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
6240572 GAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG-ATTTATTAGCTGAATTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTT-TTAGCTGAATAT
* * * * * *
6240636 TTTTGTGCATTCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTC-
387 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
6240700 AAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT-AGTGAAAAATAGAAAACAAG
452 AAAAAAA-TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAG
* *
6240764 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAA
515 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
* * *
6240829 AATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACAAACCCTATCGATCCAC
580 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCAC
* ** * * *
6240894 GGCTTGCGCATCCCGTCTCTCTGGTCAACGTAGTGCCCGCCTGCCCGTCC-TCCGCTCGTTTCGT
644 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGT
* * **
6240958 CGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTA
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACA
** * * * * * * *
6241023 GCAAGATTGGCAGCACGTAGAGGGGGACTC-GATCGATCCCTGGCTTGCGCATGCCGCCCCTCTA
774 GCTGGATCGACAGCACGCAGA-GGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
6241087 GCCGGCTGAGCGCTCGCACGCTCGTTTCGT--G-TG---T-----T---G-G--C-TT---A--C
837 GCCGGCTGAGCACCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
* * * *
6241129 ---GCATACAGAGTTCATTCCCATTCTAAGATCGAACCGGACCGAGTGTTGA-GGCAGCACATGC
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT-ACAGCAGCACATGC
* * ** * * * *
6241190 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGTCACCACCACCGGACCATCGTCG
65 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATC-GCGGAGCATCGTCG
* * * *
6241255 GAGAACCTGACCGGCGGGATTAGGGTTCCTGTGATC-GGGGGGCCG-GGGGGTGTGCGCACATGA
129 GAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
*
6241318 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-AGTCCCTCATCAAACCTTGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTA-TCCCTCATCAAACCTCGAGAAC
*
6241382 TCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
6241447 AAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAA-ATT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATA-T
* *
6241511 TTTTGTGCATGCAAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
387 TTTTGTGCATGC-CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
6241576 GAAAAAAGTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCAGGAAAAATAGAAAATGAGT
451 GAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
* * *
6241641 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAA
* *
6241706 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
581 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** *
6241771 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACCG---ATCCGCCCGTTCATTTCGTCG
646 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGTCG
* * * * * *
6241832 GTTGGCTTAGGTATACGAAATTCATTCCCAGTCTAAGATTGGACCCG-TCCGAGGGTTGCGATAG
711 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAT-CGAGGGTTGCGACAG
* * * * *
6241896 -TAGGATC-AGCAGCATGCGGAGAGGGACCC-GACCGATCCCCGGCTTGCGTATCCCGCCCCCCT
775 CT-GGATCGA-CAGCACGCAGAG-GGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * *
6241958 GGCCGGCTGAGCACCCCCACGCTCGTTTCGCGAGTTGCCTTAGGCATACGAACTTCATTCCCAGT
836 GGCCGGCTGAGCACCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGT
6242023 C
901 C
* * * * * *
6242024 TAAGCATACAGACTTCATTCCTAGTCTAACATC-AGACCAGATCGAGGGTTGCAGTAGCACATGC
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACAGCAGCACATGC
* *
6242088 TGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCAGGAGCAACGTCG
65 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGC-GGAGCATCGTCG
* *
6242153 GAGAACCTGACCGGCGACATTGGGGTTCCAGCGATTGGGGGGGCCGAGGGGGGTGTGCGCACATG
129 GAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGA-GGGGGTGTGCGCACATG
* * * * *
6242218 ATGTGTGATGGGTGCTTGTATTTGGCCCTTATATTGGTGCCCTATCTCTCATCAAACCTCGAGAA
193 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
*
6242283 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
257 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
6242348 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAATAT
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATAT
* *
6242413 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCC-
387 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * ** *
6242477 AAAAAAATGTAAACAAATCTCGAACCGCAAAAGGTTTCAAAAATCTTGAAAAATAGAAAACGAGT
452 AAAAAAATTTAAA-AAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
* *
6242542 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTATATGAATTTACAAGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAA
*
6242607 ATGGCGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
581 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
6242672 CTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGTCA
646 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGTCG
* * *
6242737 GTTGGCTTAGGCATACGGAGTTTATTCCCAGTATAAGATTGGATCGGATCGAGGGTTACGACAGC
711 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGC
* ** *
6242802 TGGATCGACATCACGCAGAGGGGACCCAGTCGATCATCGGCTTGCGCATCCCACCCCTCTGGCCG
776 TGGATCGACAGCACGCAGAGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** *
6242867 ACTGAGCGCCTGCACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
841 GCTGAGCACCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
* *
6242928 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACAGCAGCACATGCT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCT
* * * * * * * **
6242993 GGACTGGGGCATGTGTTGGTGCTGTACTTTTCTTCGTTGGGGCACCATCGTCGGAGGATCACCGG
66 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCG-CGGAGCATCGTCGG
* * * *
6243058 AAAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGAGGGGTGTGCGCACATGA
130 AGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAG-GGGGTGTGCGCACATGA
*
6243123 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAG
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
6243188 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
6243253 AAATAGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TG
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATAT-
* * * * *
6243317 TTTTCTGCATGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGAGCCAAAAATCTTTCCG
387 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
6243382 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTC
452 AAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
*
6243447 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATGTGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
* *
6243512 TGGCATTGGCACGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
6243577 TTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCGCCCGCCTGCCCACCCGCCTGCCTGCCCAC
647 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-G----CCCG--T-CC-GCCCA-
*
6243642 CCGCTCGCCCGCCCGCTCATTGCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
699 ---CT--------CG-T--TT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
6243707 TTGGATCGGATTGAGGGTTGCAACAACAGGATTG-CAGCACGCAGAAGTGGACCCAGTCGATCCC
749 TTGGATCGGATCGAGGGTTGCGACAGCTGGATCGACAGCACGCAG-AGGGGACCCAGTCGATCCC
* *
6243771 CGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCACCCACACGCTT-GTTTCGTGGGTTGACTT
813 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACG-TTCGTTTCGTGGGTTGACTT
*
6243835 AGGCATACGGAGTTCATTCTCAGTC
877 AGGCATACGGAGTTCATTCACAGTC
6243860 TAAGCATAC-GAAGTTCATT-CCAGGTCTAA
1 TAAGCATACAG-AGTTCATTCCCA-GTCTAA
6243889 TATGCGATGG
Statistics
Matches: 3179, Mismatches: 347, Indels: 191
0.86 0.09 0.05
Matches are distributed among these distances:
871 5 0.00
872 140 0.04
874 4 0.00
875 204 0.06
876 259 0.08
877 16 0.01
878 136 0.04
879 1 0.00
881 1 0.00
883 2 0.00
886 2 0.00
887 1 0.00
889 2 0.00
890 3 0.00
892 1 0.00
893 146 0.05
894 12 0.00
895 202 0.06
896 215 0.07
897 52 0.02
898 132 0.04
899 10 0.00
900 12 0.00
901 301 0.09
902 161 0.05
903 6 0.00
904 830 0.26
905 99 0.03
906 4 0.00
907 2 0.00
908 1 0.00
912 4 0.00
914 1 0.00
915 2 0.00
916 5 0.00
920 2 0.00
928 2 0.00
929 1 0.00
931 15 0.00
932 183 0.06
933 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCGGAGCATCGTCGGA
GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATATTTTT
GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCTGGAT
CGACAGCACGCAGAGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCACCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
Found at i:6243622 original size:12 final size:12
Alignment explanation
Indices: 6243607--6243654 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
6243597 CCCGGCGTAG
6243607 TGCCCGCCCGCC
1 TGCCCGCCCGCC
*
6243619 TGCCCACCCGCC
1 TGCCCGCCCGCC
* *
6243631 TGCCTGCCCACC
1 TGCCCGCCCGCC
* *
6243643 CGCTCGCCCGCC
1 TGCCCGCCCGCC
6243655 CGCTCATTGC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.04, C:0.65, G:0.21, T:0.10
Consensus pattern (12 bp):
TGCCCGCCCGCC
Found at i:6243628 original size:16 final size:16
Alignment explanation
Indices: 6243609--6243655 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
6243599 CGGCGTAGTG
6243609 CCCGCCCGCCTGCCCA
1 CCCGCCCGCCTGCCCA
*
6243625 CCCGCCTGCCTGCCCA
1 CCCGCCCGCCTGCCCA
* *
6243641 CCCGCTCGCCCGCCC
1 CCCGCCCGCCTGCCC
6243656 GCTCATTGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.04, C:0.68, G:0.19, T:0.09
Consensus pattern (16 bp):
CCCGCCCGCCTGCCCA
Found at i:6243874 original size:26 final size:26
Alignment explanation
Indices: 6243837--6243888 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6243827 GTTGACTTAG
*
6243837 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGAAGTTCATTC-CAGGTCTAA
6243863 GCATACGAAGTTCATTCCAGGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
6243889 TATGCGATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGTCTAA
Found at i:6244602 original size:26 final size:26
Alignment explanation
Indices: 6244566--6244617 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6244556 GTTGACTTAG
6244566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6244592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6244618 TATTGGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6245504 original size:26 final size:26
Alignment explanation
Indices: 6245467--6245519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6245457 GTTGACTTAG
* * *
6245467 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
6245493 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
6245519 G
1 G
6245520 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:6249930 original size:26 final size:26
Alignment explanation
Indices: 6249894--6249946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6249884 GTTGACTTAG
6249894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6249920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6249946 G
1 G
6249947 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6250053 original size:185 final size:185
Alignment explanation
Indices: 6249735--6250144 Score: 631
Period size: 185 Copynumber: 2.2 Consensus size: 185
6249725 ATTGGCTTAG
* * * * *
6249735 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGTAGGATCAGCA
* * *
6249800 GCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAACGC
66 GCATGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCTGAACGC
* *
6249865 CCGCACGCTCGTTTCCAGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 CCGCACACTCGTTTCCAGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
* *
6249920 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGGCAGTAGGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGTAGGATCAGCA
* * * *
6249985 GCATGCAAAGGGGGACCCGTCTGATCCCTGGCTTGCGCATCCCGACCCTCTGGCGGGCTGAGCGC
66 GCATGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCTGAACGC
** *
6250050 CCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
131 CCGCACACTCGTTTCCAGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
* *
6250105 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
6250145 GAGAGTTACG
Statistics
Matches: 204, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
185 204 1.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGTAGGATCAGCA
GCATGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCTGAACGC
CCGCACACTCGTTTCCAGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
Found at i:6251854 original size:26 final size:26
Alignment explanation
Indices: 6251824--6251876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6251814 GTTGACTTAG
*
6251824 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6251850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6251876 G
1 G
6251877 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6254497 original size:25 final size:26
Alignment explanation
Indices: 6254469--6254520 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
6254459 GTTGACTCAG
6254469 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
6254494 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6254520 G
1 G
6254521 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6256285 original size:26 final size:26
Alignment explanation
Indices: 6256248--6256300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6256238 GTTGACTTAG
*
6256248 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
6256274 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
6256300 G
1 G
6256301 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:6257271 original size:828 final size:823
Alignment explanation
Indices: 6255655--6257315 Score: 2361
Period size: 828 Copynumber: 2.0 Consensus size: 823
6255645 ATTTGAGATT
* *
6255655 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCAC
*
6255720 AAAATCTTGTACACTTCGACTTTTTAGTTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
66 AAAATCTTGTAAACTTCGACTTTTTAGTTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
6255785 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
131 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
* *
6255850 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCATGTGAAGGCTT
196 AACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTT
* *
6255915 AAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGT
261 AAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
6255980 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAG
326 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCCGGC--AG
* * *
6256045 TACCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
389 TA-C-G-CTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * *
6256110 TCTAAGATCAAACTAGACCGAGGGTTGCGGCAGCAAGATTGACAGCATGCAGAGGGGGACCCGGC
451 TCTAAGATCAAACTAGACCGAGGGTTGCGACAGCAAGATTGACAGCACGCAGAGAGGGACCCGAC
* **
6256175 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCTTGCTCATTCTGTGGGT
516 CGATCCCCGGCTTGCGCAACCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTCTGTGGGT
* ** *
6256240 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCG
581 TGACCTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG
* *
6256305 GACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
646 GACTGGACCGAGGGTTACGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
* * *
6256370 CACCGGGGTACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTTTGGCGAT
711 CACCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTTTGACGAT
6256435 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
776 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
6256483 TTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATAGTCAC
1 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCAC
* * *
6256548 AAAATCTTGTAAACTTTGAGTTTTTAGCTT-AATTTTTTTGTGCATGCCAACAAAAGTACAAGGA
66 AAAATCTTGTAAACTTCGACTTTTTAG-TTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * **
6256612 TCATGTCTACCAAGTTTTGGGCCAAAACA-CCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCA
130 TCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
* ** * * *
6256676 AAATCTTTTGAAAATTATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
194 AAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGC
* * * *
6256741 TTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATGAAGAT
259 TTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
6256806 GTGCCTGAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCACTGGCCGGC-G
324 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCCGGCAG
*
6256870 TA-G-TGCCCGCCCGTCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
389 TACGCTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
6256933 GAGATCAGA-TAGGATCGGGGGTTGCGACAGTAGGATTGGCAGCACGCAGAGAGTGACCCGACCG
454 AAGATCAAACTA-GACCGAGGGTTGCGACAGCAAGATTGACAGCACGCAGAGAGGGACCCGACCG
* * * ** *
6256997 ATCCCCGGCTTGCGCAACTCGCCCTTCTGGTCGGTTGAGCGCCCGCACGCTTGTT-TCGTTGGTT
518 ATCCCCGGCTTGCGCAACCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTCT-GTGGGTT
* * *
6257061 GACCTAGGCGTACAAAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
582 GACCTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
* * * *
6257126 AC-GAGACCGAGGGTTGTC-GTAGCACAAGTTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCT
647 ACTG-GACCGAGGGTT-ACGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
***
6257189 TTGTCGAGGCACCATCGTCGGAGCATCACC-AGAGAACCTGACCGACGGCATTGGGGTTTTGACG
710 TCACCGAGGCACCATCGTCGGAGCATCACCGA-AGAACCTGACCGACGGCATTGGGGTTTTGACG
* *
6257253 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
774 ATC------G--GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
6257311 TTATA
1 TTATA
6257316 TTGGCCCCCT
Statistics
Matches: 739, Mismatches: 79, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
819 5 0.01
820 328 0.44
821 1 0.00
822 1 0.00
825 3 0.00
826 1 0.00
828 397 0.54
829 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (823 bp):
TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCAC
AAAATCTTGTAAACTTCGACTTTTTAGTTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
AACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCCGGCAGTA
CGCTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAAACTAGACCGAGGGTTGCGACAGCAAGATTGACAGCACGCAGAGAGGGACCCGACCGATC
CCCGGCTTGCGCAACCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTCTGTGGGTTGACC
TAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTG
GACCGAGGGTTACGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG
AGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTTTGACGATCGGGG
GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
Found at i:6257478 original size:26 final size:26
Alignment explanation
Indices: 6257436--6257486 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
6257426 TTGACTTAGG
*
6257436 CATACGGAGCTTTTTCCCAGTCTAAT
1 CATACGGAGCTTATTCCCAGTCTAAT
6257462 CATACGGAG-TTCATTCCCAGTCTAA
1 CATACGGAGCTT-ATTCCCAGTCTAA
6257487 GATCAGACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGCTTATTCCCAGTCTAAT
Found at i:6257670 original size:367 final size:367
Alignment explanation
Indices: 6256997--6257702 Score: 961
Period size: 367 Copynumber: 1.9 Consensus size: 367
6256987 GACCCGACCG
* * * * * *
6256997 ATCCCCGGCTTGCGCAACTCGCCCTTCTGGTCGGTTGAGCGCCCGCACGCTTGTTTCGTTGGTTG
1 ATCCCCGGCTTGCGCAACTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTG
* * * *
6257062 ACCTAGGCGTACAAAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
66 ACCTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
6257127 CGAGACCGAGGGTTGTCGTAGCACAAGTTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTTG
131 CGAGACCGAGGGTTGTCGCAACACAAGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG
* **
6257192 TCGAGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTGACGATCG
196 TCGAGGCACCATCGTCGGAGCATCACCAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG
* * *
6257257 GGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
261 AGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
6257322 CCCTATCCCTCATCTTGCGCATCCCGTCTCTCTGGTCGGCTA
326 CCCTATCCCTCATCTTGCGCATCCCGTCTCTCTGGTCGGCTA
* * * **
6257364 ATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGTGCCCGTGCACTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCAACTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTG
* ** * *
6257429 ACTTAGGCATACGGAGCTT-TTTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 ACCTAGGCATACAAAG-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * **
6257493 ACTAGATCGAGGGTTG-CGACAACACATGCTGGGCTCGAGCATGTGTTGGTGCCATTTTTTTCTT
130 ACGAGACCGAGGGTTGTCG-CAACACAAGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT
* * **
6257557 CG-CGGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTAACC-AGCGGCATTGGGGTTCCGGTG
194 CGTC-GAGGCACCATCGTCGGAGCATCACCAGAGAACCTAACCGA-CGGCATTGGGGTTCCGACG
*
6257620 ATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGTCCTTATATT
257 ATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
6257685 GGCCCCCTATCCCTCATC
322 GGCCCCCTATCCCTCATC
6257703 AAACATTGAG
Statistics
Matches: 292, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
366 4 0.01
367 286 0.98
368 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (367 bp):
ATCCCCGGCTTGCGCAACTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTG
ACCTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CGAGACCGAGGGTTGTCGCAACACAAGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG
TCGAGGCACCATCGTCGGAGCATCACCAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG
AGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCTTGCGCATCCCGTCTCTCTGGTCGGCTA
Found at i:6258357 original size:26 final size:26
Alignment explanation
Indices: 6258327--6258379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6258317 GTTGACTTAG
*
6258327 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6258353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6258379 G
1 G
6258380 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6258906 original size:26 final size:26
Alignment explanation
Indices: 6258877--6258929 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6258867 ATTGACTTAG
6258877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6258903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6258929 G
1 G
6258930 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6260700 original size:26 final size:26
Alignment explanation
Indices: 6260664--6260716 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6260654 GTTGACTTAG
6260664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6260690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6260716 G
1 G
6260717 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6261606 original size:26 final size:26
Alignment explanation
Indices: 6261570--6261622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6261560 GTTGACTTAG
6261570 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
6261596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6261622 G
1 G
6261623 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6262484 original size:26 final size:26
Alignment explanation
Indices: 6262454--6262506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6262444 GTTGACTTAG
* *
6262454 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6262480 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6262506 G
1 G
6262507 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6263021 original size:886 final size:885
Alignment explanation
Indices: 6258700--6265266 Score: 7652
Period size: 885 Copynumber: 7.4 Consensus size: 885
6258690 CGCCCGCTTG
* ** ** *
6258700 TTTCGTCGATTGGCAGAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC-GAATCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGT
* ** * * * * * *
6258764 TACAACAGCAGGATCGACAGCATGCAGAGGGGGA-CCTGATCGATCTCCTG-CTTGTGCATCTCG
65 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTG-CCGATC-CCCGACTTGCGCATCCCG
* * * **
6258827 CCCCTTTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGCATTGACTTAGGCATACGGAGTTCAT
128 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
6258892 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCAAAGGTTATGGTAG
193 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAG
* * *
6258957 CACATGCTGGTCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGC
258 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---C---G-
* * *
6259022 ATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGTG
316 -T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCG
* *
6259086 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCT
376 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
6259151 CGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAA
441 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
6259216 GTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
506 GTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* * * * *
6259281 TG-ATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCGAAAACT
570 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACT
* ** *
6259345 CCTTCCGAAAAAATTTAAAAAAATCCTGAGTCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
635 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAA
*
6259410 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCC
700 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
6259475 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
765 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
6259540 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAG-CGCCCGCCCGCCCGCTCG
830 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTCGCCCGCCCGCCTGTTCT
* *
6259595 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACC--A--GA----T
1 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * * * * * * * *
6259652 -AGGCAGCAGGATAGACAGCATGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCC
66 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTGCCGATCCCCGACTTGCGCATCCCGCCC
* * * **
6259716 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGTCTTAGGCATATAGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
6259781 CAGTCTAA-CATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTATGGTAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAC
* * * * *
6259845 ATTCTAGGCTAGGGCATGTGCTTGTGCCGCTTTTTTCTTCATCGGGGCACCATTGACGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-T--C---G--T-
* * * ** * *
6259910 GCCGGAGAACCTGACCGATGGCATTAGGGTTCTGACGATCGGGGAAGCCAGGGGGTGTGTGCACA
317 --CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* ** *
6259975 TGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTTTCCCCCTATCCCTTATCAAACCTCGAG
380 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
6260040 AACTCAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
445 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
6260105 CTGAAAGGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA
510 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-AA
* * *
6260170 TTTTTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAAATTGGGGCCAAAACTTCTT
574 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTT
* * * * *
6260234 CCGAAAAAACTTTAAAAAATCCCGAAACGCAAAAAGTTTCACAAATCGTGAAAAATAGAAAACGA
639 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGA
*
6260299 GTCATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
704 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
6260364 AAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATTCAC
769 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
6260429 GGCTTGCGCATCCCGTCTCTCTAGCCGATGTAGTGCCCGCCCGTCTGCCCGCCTGTCCTTCTGCT
834 GGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGT---CG-CC--C-GCCCGCCTG----T-T-CT
** * * *
6260494 CGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTCCGAGTCTAAGAT-TG---GG-C-CA---
1 --TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
*** * * * * * * *
6260550 AACCAGCAACAAGATCAGCAGCACGCAGAAGGGGACCC-GACCGATCCCC-AGCTTGTGCATCCT
64 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTG-CCGATCCCCGA-CTTGCGCATCCC
*
6260613 GCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
127 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
6260678 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGGTA
192 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCA
* * *
6260743 TCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAG
257 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC---G
* * * * *
6260808 CATCGCTAGAAAACATGACCGACAGCATTGGTGTTCCGACAATCGGGGGGGCCAGAGGGGGTATG
319 ----G--AG--AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTG
* *
6260873 CGCACATCATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAAC
374 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
6260938 CTC-AGGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
439 CTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
6261002 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTA
503 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* * *
6261067 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGGCCAAA
568 GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTT-GGGGCCAAA
* * * *
6261132 ATTCCTTTCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
632 ACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGGAAAATA
* * * * * *
6261196 GAAAATGAGTTGA-CTTGCCATAAAACTTCACGTGCAGGCTAAAGGGACCATTGTATGAATTTAT
696 GAAAACGAG-TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * *
6261260 AGGCCAAAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTA
760 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
6261325 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGT
825 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGT---CGCCCGCCCG--C-CT-GT
6261390 T-T
883 TCT
* * *
6261392 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGT
1 -TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* * *
6261457 TACGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCTGCCCGATCCCC-AGCTTGCGCATCCTG
65 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTG-CCGATCCCCGA-CTTGCGCATCCCG
* * * *
6261520 CCCCTCTGGCCGGCTGAGCGGCCGCACACTTGTTTCTTGGGTTGACTTAGGCATACGGAGTTCAT
128 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* **
6261585 TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACGGCAG
193 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAG
* * *
6261650 CACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGA
258 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGA
* * * *
6261715 ACCTGACCGGCGACATTGGGGATCCGACGATCGGGGGGGCCGGTGGGGTGTGCACACATGATGTG
323 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* *
6261780 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
6261845 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
6261909 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTA
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
*
6261974 TGCATGCCAACAAAAATACAAGCATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAA
* *
6262039 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAAGAGAAAACGAGTCGTCTT
647 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTT
* *
6262104 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
6262169 TTGCCATGCAAAAATACGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
777 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
6262234 CATCCCGTCTCTTTGACCGATGTAGT-GCCCGCCCGCCTATTCT
842 CATCCCGTCTCTCTGGCCGATGTAGTCGCCCGCCCGCCTGTTCT
* * * *
6262277 TTTCGTTGGTTGGGTTAGGCATATAGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
** * * * * *
6262342 GCGGCAATAGGATCGGTAGCATGCAGATGGGGACCCAGCTGATCCCCGACTTGCGCATCCCGCCC
66 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTGCCGATCCCCGACTTGCGCATCCCGCCC
* * * * *
6262407 GTCTGGCCGGTTGAGCGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** * *
6262472 TAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAC
* * *
6262537 ATGCTGGGCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACC
* * * *
6262602 TGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACATGATGTGTG
326 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCG
*
6262667 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
389 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
6262732 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTAAAATGG
454 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
6262797 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATG
519 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATG
* * * *
6262862 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAATTTGGGGCCAAAAATCCTTCCAAAAAAAT
584 CATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
6262927 TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAAGAGAAAACGAGTCATCTTGC
649 TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTGC
* *
6262992 CATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTTTTAATTTACAAGCCATAAAAATGGCATT
714 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
6263056 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCGACGGCTTGCGCA
779 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
6263121 TCCCGTCTCTCTGGTCGGCGTAGAGCCCGCTCGCCCGCCCGCCCGCTCGT
844 TCCCGTCTCTCTGG-C--CG-A-TG-TAG-TCGCCCGCCCGCCTGTTC-T
* ** *
6263171 TTT-GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
** *
6263235 GCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCC
66 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTG-CCGATCCCCGACTTGCGCATCCCGCC
* * * *
6263299 CCTCTGGTCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
**
6263364 CCAG--T----ATA---AG---------A-TC--AGAT-----CGGATCGAGGGTGGCGGCAGCA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCA
* * * *
6263403 CATGCTAGGCTCGGGCATGTACTGGTGCTGCATTTTTCTTCATCGGGGCACCACCGTCGGAGCAA
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG-AA
* * * * *
6263468 CGCAGGAGAACCTGACTGGCGGCATTGAGGTTCCGACAATCGGAGGGGCTGGGGGGGTGTGCGCA
324 C-C---TG-ACC-GA----CGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCA
* * *
6263533 CATGATGTGCGAAGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCGT-
378 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TC
* * * * *
6263597 GAGAACTCACACCTCCTTAAAGAGCATTTCATATTTTATAGGTTTGCTACCAGTAGCCATTAAAG
442 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
6263662 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
507 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
* * *
6263727 AATTTTTTTTTTGCATGCCAACAAAAATACAAGGATAACATCTACCAAGA-TTGGGGCCAAAACT
572 AA-TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-ATTTGGGGCCAAAACT
* * * *
6263791 CCTTTCGAGAAAATTTTAAAAAATCCCGAACCACAAAAA----CAAAAATCGT-G-AAA-A-AAA
635 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAA
* * *
6263848 ACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCT
700 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
6263913 GTAAAAATGGCATTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
765 ATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
6263977 TCCATGGCTTGCGCATCCCATCTCTTTGGCCGGCATAGT-GCTCGCCCGCCCACCCTCCCGTTCG
829 TCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-AT-GTAG-TCGCCCGCCC-GCCT---GTTCT
* * * * *
6264041 TTTCGTCGGTTGGCTTAGGCATGC-GAAGTTCATTCCCAGTGTAAGATCAGACCGAAC-CAGGCA
1 TTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG-G
** * * * * **
6264104 TCACGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCTGCCGATCCCCAATTTTTGCATCCCGC
64 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTGCCGATCCCCGACTTGCGCATCCCGC
* * *
6264169 TCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCATT
129 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
6264234 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGC
194 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGC
* * * *
6264299 ACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCA-CTGAGCACCATCGCCGGAGCA
259 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---C---G--
* *
6264363 TCGCCGGGGAACCTGACCGACGGCATTGGGGTTCCG-CGATC--GGGGGCCGAGGGGTGTGGCGC
316 T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT-GCGC
*
6264425 -CATGATGTGCAATGGGGTGCTGCGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
377 ACATGATGTGCGAT-GGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
6264488 TCGAGAACTGACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGCTGCCAGTAGCCATT
440 TCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATT
* *
6264553 AAAGTGTCTAAAATGGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACGACTTCGAGTTTT
503 AAAGTGTCTGAAATGGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTTGAGTTTT
* *
6264618 TAGCT-AAATTTTTTATGCATGCCGCAA-AAAAATACAAGGATTCACGGTCTAACCCAAGTTTGG
566 TAGCTGAATTTTTTTATGCATG-C-CAACAAAAATACAAGGA-TCAC-GTCT-A-CCAAATTT-G
* * * ** * *
6264681 GGGCAAAAAAAGCCCCTTCCGAAAAAATTTAAAAAAATCCCCAAACCACAAAAAGTTT-GAAAAT
624 GGGC--CAAAA-CTCCTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAAT
* * *
6264745 CATGGAAAAATAGAAAACGAGTCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTA
685 CGTGG-AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
**
6264809 TATG-ATTTACAAAGCCATAAAAATGGCATTGGCACAACAGAAATAGTGAAGATGTGCCTAAACC
749 TATGAATTTAC-AAGCCATAAAAATGGCATTGGCA-TGCAGAAATA-TGAAGATGTGCCTAAACC
* * * * *
6264873 CAACCTACCATCCCTATCGATCCATGGCTTTGCGCATCCGCGTCTCTATGGTCGGTGTAGTGGCC
811 C-ACCTACCA-CCCTATCGATCCACGGC-TTGCGCATCC-CGTCTCTCTGGCCGATGTAGTCG-C
* * *
6264938 CACGACCGCCCGCTCGT
871 C-CGCCCGCCTGTTC-T
* * * * * *
6264955 TTT-GTCAGTTGCCTTCGGCATAC-GAAGTTCATTCCTCAGTTGTAAGATGCAGACCCAGACCGA
1 TTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCC-CAG-TCTAAGAT-CAGA-CCGGACTGA
* ** * * * * * *
6265018 GGGTTGCATGCAGCAGGAATCGATAGCACGTAGAGGGGGA-CCAGCCGATTCGCTAGCTTGTGCA
61 GGGTTGC-GGCAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCTGCCGATCCCCGA-CTTGCGCA
* *
6265082 TCCC-CACCTC-AGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGGCAT----A
123 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGA
* *
6265141 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTA
187 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTA
**
6265206 CAACAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTC--C-GGGCACCATCGT
252 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
6265267 NNNNNNNNNN
Statistics
Matches: 4929, Mismatches: 547, Indels: 384
0.84 0.09 0.07
Matches are distributed among these distances:
867 87 0.02
868 6 0.00
869 4 0.00
870 53 0.01
871 270 0.05
872 9 0.00
873 5 0.00
874 13 0.00
875 1 0.00
877 193 0.04
878 117 0.02
879 1 0.00
880 2 0.00
884 365 0.07
885 746 0.15
886 402 0.08
887 7 0.00
888 11 0.00
889 4 0.00
890 5 0.00
891 6 0.00
892 239 0.05
893 393 0.08
894 132 0.03
895 135 0.03
896 72 0.01
897 125 0.03
898 6 0.00
899 6 0.00
900 13 0.00
901 172 0.03
902 131 0.03
903 17 0.00
904 256 0.05
905 240 0.05
906 233 0.05
907 4 0.00
908 8 0.00
909 1 0.00
911 17 0.00
912 54 0.01
913 88 0.02
914 104 0.02
915 20 0.00
916 27 0.01
917 60 0.01
918 41 0.01
919 28 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCTGCCGATCCCCGACTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGATGTAGTCGCCCGCCCGCCTGTTCT
Found at i:6264247 original size:26 final size:26
Alignment explanation
Indices: 6264218--6264270 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6264208 GTTGACTGAG
6264218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6264244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6264270 G
1 G
6264271 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6266635 original size:60 final size:60
Alignment explanation
Indices: 6266507--6266733 Score: 213
Period size: 59 Copynumber: 3.8 Consensus size: 60
6266497 CTGGTAGGGA
* * *
6266507 AAAATTGATAGCTTTCAAC-TTTCC-CAAAAAAATAATTTTTTTTGGAAATTT-ATTT--TAGG
1 AAAATTGATA-CTTTCAACTTTTCCTC-AAAATAT-A-TTTTTTTGAAAATTTGATTTCCAAGG
*
6266566 AAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTTTGAAACTTTGCATTTCCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTTTGAAAATTTG-ATTTCCAAGG
*** **
6266627 -AAATTGATACTTTCAACTTTTCCTC-AAA-ACCCTTTTTTGAAAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTTTG-AAAATTTGATTTCCAAGG
* *
6266684 AAAATTGAATACTTTCAACTTTTCC-CTAAAATATTTTTTTTTGGAAATTT
1 AAAATTG-ATACTTTCAACTTTTCCTC-AAAATATATTTTTTTGAAAATTT
6266734 TGATATTTTA
Statistics
Matches: 142, Mismatches: 14, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
57 21 0.15
58 24 0.17
59 51 0.36
60 35 0.25
61 11 0.08
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTTTGAAAATTTGATTTCCAAGG
Found at i:6266770 original size:14 final size:14
Alignment explanation
Indices: 6266751--6266808 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
6266741 TTATTTAAAG
*
6266751 AAAATAGAATAATA
1 AAAATAGAAAAATA
6266765 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
6266779 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
6266794 AAAAT--AAAAATA
1 AAAATAGAAAAATA
6266806 AAA
1 AAA
6266809 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:6266778 original size:17 final size:17
Alignment explanation
Indices: 6266758--6266808 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
6266748 AAGAAAATAG
6266758 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
6266775 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
6266793 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
6266809 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:6266817 original size:17 final size:16
Alignment explanation
Indices: 6266795--6266834 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6266785 AGTAAAACAA
*
6266795 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
6266811 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
6266828 AAATAAA
1 AAATAAA
6266835 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:6266850 original size:4 final size:4
Alignment explanation
Indices: 6266843--6266884 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
6266833 AACCTAATCT
* * *
6266843 AATA AATA AAAA AACA AATA AACA AATA AATA AATA AA-A AAT
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT
6266885 TCAAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (4 bp):
AATA
Found at i:6267904 original size:21 final size:21
Alignment explanation
Indices: 6267838--6267976 Score: 60
Period size: 21 Copynumber: 6.4 Consensus size: 21
6267828 CAAGAAAAAT
*
6267838 AATAATAATAAATA-AATTATA
1 AATAA-AATAAATATAAATATA
*
6267859 ATATATAATAAATATAGAACTATATA
1 A-ATAAAATAAATAT--AA--ATATA
*
6267885 AATAAAATACATATAAATATTA
1 AATAAAATAAATATAAATA-TA
*
6267907 ACAAAAAAT-AA-AT-AA-ATA
1 A-ATAAAATAAATATAAATATA
*
6267925 AATAAGTAA-AAATATACATAT-
1 AATAA--AATAAATATAAATATA
6267946 AATAATAATAAATAATAAA-ATA
1 AATAA-AATAAAT-ATAAATATA
*
6267968 CATAAAATA
1 AATAAAATA
6267977 CAAAAGAAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 34
0.67 0.07 0.25
Matches are distributed among these distances:
17 3 0.03
18 3 0.03
19 5 0.05
20 7 0.08
21 30 0.33
22 17 0.19
23 8 0.09
24 2 0.02
25 11 0.12
26 5 0.05
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (21 bp):
AATAAAATAAATATAAATATA
Found at i:6267968 original size:27 final size:27
Alignment explanation
Indices: 6267916--6267976 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
6267906 AACAAAAAAT
*
6267916 AAATAAATAAATAAGTAAAAATATACATA
1 AAAT-AAT-AATAAATAAAAATATACATA
*
6267945 TAATAATAATAAATAATAAA-ATACATA
1 AAATAATAATAAATAA-AAATATACATA
6267972 AAATA
1 AAATA
6267977 CAAAAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 19 0.68
28 6 0.21
29 3 0.11
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAATAATAAATAAAAATATACATA
Found at i:6267974 original size:39 final size:35
Alignment explanation
Indices: 6267885--6267974 Score: 85
Period size: 39 Copynumber: 2.5 Consensus size: 35
6267875 GAACTATATA
* *
6267885 AATAAAATACATATAAATATTAACAAAAAATAAAT
1 AATAAAATACATAAAAATATCAACAAAAAATAAAT
*
6267920 AA-ATAAATA-AGTAAAAATATACATATAATAATAATAAAT
1 AATA-AAATACA-TAAAAATAT-CA-ACAA-AA-AATAAAT
6267959 AATAAAATACATAAAA
1 AATAAAATACATAAAA
6267975 TACAAAAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
34 2 0.05
35 15 0.34
36 1 0.02
37 3 0.07
38 2 0.05
39 19 0.43
40 2 0.05
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (35 bp):
AATAAAATACATAAAAATATCAACAAAAAATAAAT
Found at i:6268862 original size:25 final size:26
Alignment explanation
Indices: 6268828--6268879 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
6268818 GTTGACTTAG
6268828 GCATACGGAGTTCATTCCCA-TCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6268853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6268879 G
1 G
6268880 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6269757 original size:26 final size:26
Alignment explanation
Indices: 6269728--6269777 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6269718 CACTTAGACA
*
6269728 TACGGAGCTCATTCCCAGTCTAAGCT
1 TACGGAGCTCATTCCCAATCTAAGCT
*
6269754 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGCTCATTCCCAATCTAAG
6269778 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAATCTAAGCT
Found at i:6270171 original size:888 final size:887
Alignment explanation
Indices: 6268098--6270836 Score: 3773
Period size: 900 Copynumber: 3.1 Consensus size: 887
6268088 TACAGGTAGG
* * * * * *
6268098 ATTGGGGTTCCAGCGATCGGAGGGGCC-GGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGGT
1 ATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
6268162 ACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAA
66 ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* * *
6268226 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGTACACTTTTTT
* *
6268291 CAAATGGTCACAAAATCTTGTACGCTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
6268356 AATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAATATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCT
* * * * *
6268421 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGATTCGTCTTGCCATGAAACTTCA
326 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * *
6268486 TGTG-AAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
391 CGTGAAAGCC-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
* * * * *
6268550 ATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTC
455 ATATGAAGATGTACCTAAA-CCACCTACCACCCTATCGATCCAAGGCTTGCGTATCCTGTCTCTC
* *
6268615 TGGCCGGCGTAGTGACCGCCCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACAGA
519 TGGCCGGCGTAGT----GCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGA
* * * * * *
6268680 GTTCATTCCCAATATAAGATCACACCAGACCGAGGGTTGCGGCAGCAAGATCAACAGCACGTAGA
580 GTTCATTCCCAATATAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGA
** * * * *
6268745 GGGGGACCC-AGTTGATCCCCGGCTTACGCA-CCCGCCCTCTGGCCGGCTAAGCACCCGCACGCT
645 GGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCT
6268808 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTAAGCATACGGAGTTCATTCCC
709 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * *
6268872 AGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTGC
774 AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * *
6268937 CGCATTTTTCTTATTCGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTAATCGACGGC
839 CGCATTTTTCTTCGTCGGGGCACCAT---C--A-C--CG---GAGAACCTGACCGACGGC
* * *
6268997 ATTGGGGTTCCGGTGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGTACGATGGGTGCTGGT
1 ATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
6269061 ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
*
6269126 CATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGTACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGTACACTTTTTT
6269191 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
6269256 AATACCAGGATCACGTCAACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTAAAAAAATCT
261 AATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCT
**
6269321 TGAATGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
326 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
*
6269386 CGTGAAAGCCTAAGGGACCATTAG-ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
391 CGTGAAAGCCTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
*
6269450 ATATGAAGATGTACCTAAACGCACCTACCACCCTATCAATCCAAGGCTTGCGTATCCTGTCTCTC
455 ATATGAAGATGTACCTAAAC-CACCTACCACCCTATCGATCCAAGGCTTGCGTATCCTGTCTCTC
* * *
6269515 TGGTCGGCGTAGTGCCTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
519 TGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTC
* * *
6269580 ATTCCCAATCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGG
584 ATTCCCAATATAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGG
* *
6269645 GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGTTGAGCGCCCGCACGCTCG-T
649 GACCCGACCGATCCCCGACTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* ** * * * *
6269709 TCATGGGTACACTTAGACATACGGAGCTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAATC
713 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
6269774 TAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGGTAGGCTCGGGCATGTGCTGGTGCTGCA
778 TAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
6269839 TTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACAGC
843 TTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGC
* * * *
6269884 ATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGA
1 ATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
6269949 ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTCGAGCACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* * *
6270014 CGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGTTTACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGTACACTTTTTT
* *** * *
6270079 CAAATGGTTACAAAATCTCACACACTTCAAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
6270144 AATACAAGGATAAGGTCTACAAAGTTTGGGGCCAAAAAACCTTCCG-AAAAATTTTAAAAAATCT
261 AATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCT
** * * *
6270208 CAAACCGTAAAAAGTTTAAAAAATCATTAAAAATAGAAAATCAGTCGTCTTGCCATGAAACTTCA
326 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * * *
6270273 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGTAAAAA
391 CGTGAAAGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
* * *
6270338 TATGAAGATGTACCTAAACCAACCTAACACCCTATCGATCCATGGCTTGCGTACCCTGTCTCTCT
456 TATGAAGATGTACCTAAACC-ACCTACCACCCTATCGATCCAAGGCTTGCGTATCCTGTCTCTCT
* * * * *
6270403 GCCCGACGTAGTGCCTGCCTGCCTGCCCGCTCGTTCCGTTGGTTGGCTTAGGCATAC-GAAGTTC
520 GGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAG-AGTTC
* * ** * * * * * * * *
6270467 ATTCCCAGTTTAAGATTGGACCGGACTAAGGGTTGTGATAGCAGGATCGGCAACATGCAAAGGGG
584 ATTCCCAATATAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGG
* * * *
6270532 GACCCGACCGACCCCCGACTTG-GCATCCCGCCCTCTGGCCTGCTGAGCGCCCGTATGCTCGTTT
649 GACCCGACCGATCCCCGACTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
6270596 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
714 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *
6270661 AAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
779 AAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * ** * *
6270726 TTTTCTTCGTC--AG-AGCATCGTCGGAGAACCTGACTGGCGGC
844 TTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGC
* * * * *
6270767 GTT-GGGCTTCTGGCGATCGGGGGGGCTAGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTG
1 ATTGGGGTTTC-GGTGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
6270831 GTACTT
64 GTACTT
6270837 TTTTCAAATG
Statistics
Matches: 1638, Mismatches: 186, Indels: 47
0.88 0.10 0.03
Matches are distributed among these distances:
882 6 0.00
883 37 0.02
884 39 0.02
885 26 0.02
886 139 0.08
887 349 0.21
888 263 0.16
890 2 0.00
892 1 0.00
893 1 0.00
895 1 0.00
896 124 0.08
897 37 0.02
898 135 0.08
899 66 0.04
900 406 0.25
901 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (887 bp):
ATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATTCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGTACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCT
TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAAGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
TATGAAGATGTACCTAAACCACCTACCACCCTATCGATCCAAGGCTTGCGTATCCTGTCTCTCTG
GCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCAT
TCCCAATATAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGA
CCCGACCGATCCCCGACTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGC
Found at i:6271402 original size:26 final size:26
Alignment explanation
Indices: 6271373--6271423 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6271363 GTTGACTTAG
*
6271373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6271399 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
6271424 TGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6272249 original size:26 final size:26
Alignment explanation
Indices: 6272213--6272265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6272203 GTTGACTTAG
*
6272213 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6272239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6272265 G
1 G
6272266 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6273914 original size:809 final size:809
Alignment explanation
Indices: 6272381--6273953 Score: 2452
Period size: 809 Copynumber: 1.9 Consensus size: 809
6272371 CTAACCGATG
* * * * *
6272381 GCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTGTGCGCGCATGATGTGTGATGGGTGCT
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTACGCACATAATGTGTGATGGGTGCT
* * * *
6272446 CGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAT
66 CGTACTTGGACCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
6272511 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTCTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
6272576 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
6272641 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTGAAAAG
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAGTTTAAAAAA
6272706 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
326 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
6272771 TCACGTGAAAGCCTAAGGGACCATTAGATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
391 TCACGTGAAAGCCTAAGGGACCATTAGATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAG
**
6272836 AAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTC
456 AAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTC
* * *
6272901 TCTGGTCGGCATAGTGCCCACCCGCCCGCTTGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGT
521 TCTGGCCGACATAGTGCCCACCCGCCCGCTTGCTCGTTTCACCAGTTGGCTTAGGCATACGGAGT
* *
6272966 TCATTCCCAGTCTAAGATCATATCGGACCAAAAGTTGCTGCAGCAGGATCGATAGCACACAGAGG
586 TCATTCCCAGTCTAAGATCAGATCGGACCAAAAGTTGCTGCAGCAGGATCGACAGCACACAGAGG
* * ** * *
6273031 GGGACCCGGTCGATCCCCAGCTTGCGTATCCCACCCCTCTGGCTGGCTGTGTGCCCGCACACTCA
651 GGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAAGCTGAGCGCCCGCACACTCA
* *
6273096 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTTCTATCTAAGCATATGGGGTTCTTCATCGG
716 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCGATCTAAGCATATGGGGTTCTTCATCGG
6273161 GGCACCATCGCCGGAGAACTTGACCGGCA
781 GGCACCATCGCCGGAGAACTTGACCGGCA
* *
6273190 GCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGGCTGTACGCACGTAATGTGTGATGGGTGC
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGG-TGTACGCACATAATGTGTGATGGGTGC
*
6273254 TGGTACTTGGACCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
65 TCGTACTTGGACCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
6273319 AGAGCATTTGAGATTCTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTCTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
6273384 TTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
6273449 CAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTTCGAAAAAAGTTTAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAAGTTTAAAA
* ** * *
6273513 AATCCCGAATTGTAAAAAGTTTCAAAAATGATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
324 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* * ** **
6273578 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGC
389 CTTCACGTGAAAGCCTAAGGGACCATTAGATGAATTTACAAGCCAAAAAAATGGCATTGGCACAC
* *
6273643 AGAAATATGAAGATGTGCGTAAACACACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTC
** *** *
6273708 TCTCTGGCCGATTTAGTGCTTGCCCGCCCG-TCTGCTCGTTTCGCCAGTTGGCTTAGGCATACGG
519 TCTCTGGCCGACATAGTGCCCACCCGCCCGCT-TGCTCGTTTCACCAGTTGGCTTAGGCATACGG
* ** * * *
6273772 AGTTCATTCCCCGTCTAAGATTGGATCGGACCAAAGGTTG-TGGCAGCAGGATCGGCAGCACGCA
583 AGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAAGTTGCT-GCAGCAGGATCGACAGCACACA
* * *
6273836 GAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCAAGCTGAGCGCCCGCACC
647 GAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAAGCTGAGCGCCCGCACA
* * *
6273901 CTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCTCGGTCTAAGCATA
712 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCGATCTAAGCATA
6273954 CGAAGTTCAT
Statistics
Matches: 690, Mismatches: 70, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
808 11 0.02
809 679 0.98
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (809 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTACGCACATAATGTGTGATGGGTGCT
CGTACTTGGACCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTCTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAGTTTAAAAAA
TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAAGCCTAAGGGACCATTAGATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAG
AAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTC
TCTGGCCGACATAGTGCCCACCCGCCCGCTTGCTCGTTTCACCAGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCGGACCAAAAGTTGCTGCAGCAGGATCGACAGCACACAGAGG
GGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAAGCTGAGCGCCCGCACACTCA
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCGATCTAAGCATATGGGGTTCTTCATCGG
GGCACCATCGCCGGAGAACTTGACCGGCA
Found at i:6273960 original size:26 final size:26
Alignment explanation
Indices: 6273923--6273975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6273913 GTTGACTTAG
* *
6273923 GCATACTGAGTTCATTCTCGGTCTAA
1 GCATACTGAGTTCATTCCCAGTCTAA
6273949 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
6273975 G
1 G
6273976 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:6274923 original size:891 final size:889
Alignment explanation
Indices: 6273158--6276784 Score: 4872
Period size: 891 Copynumber: 4.0 Consensus size: 889
6273148 GGTTCTTCAT
* * * *
6273158 CGGGGCACCATCGCCGGAGAACTTGACCGGC-AGCATTGGGGTTCCGACGATCGGGGGGGTCGGG
1 CGGGGCACCATCGTCGGACAACCTGACCGGCGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * * * * *
6273222 GGGGCTGTACGCACGTAATGTGTGATGGGTGCTGGTACTTGGACCTCATATTGGCCCCCTATCCC
65 GGGG-TGTCCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
6273287 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTCCCAG
129 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
6273352 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
6273417 AGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAACTACAAGGATCACGTCTACCAAGTTTGG
259 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGG
* * * ** * *
6273482 GGCCAAAACTCTTTTCGAAAAAAGTTTAAAAAATCCCGAATTGTAAAAAGTTTCAAAAATGATGA
324 GGCCAAAACTC-CTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
*
6273547 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAA
388 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
6273612 TTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACACACCTACCA
453 TTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCA
* **
6273677 CCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGATTTAGTGCTTGCCCGCCCGTCTG
518 CCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGTCTG
* * * *
6273742 CTCGTTTCGCCAGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTGGATCGGACCAAA
583 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAA
* *
6273807 GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAG-CTTGTGCATCC
648 GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTAGACTTGCGCATCC
** * *
6273871 CGCCCCTCTGGCAAGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTC
713 CGCCCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
6273936 ATTCTCGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGAC
778 ATTCCCGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGAC
6274001 AGCACATGCTGGGCTCGAGCATGTGCTGGTGACCCATTTTTCTTCGC
843 AGCACATGCTGGGCTCGAGCATGTGCTGGTGACCCATTTTTCTTCGC
* * *
6274048 CGGGGCACCATCATCGGACAACCTGACCGACGACATTGGGGGTTCCAACGATCGGGGGGGCCGAG
1 CGGGGCACCATCGTCGGACAACCTGACCGGCGACATT-GGGGTTCCGACGATCGGGGGGGCCG-G
* *
6274113 GGGGGTGTCCACACGTGGTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
64 GGGGGTGTCCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
6274178 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
129 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
6274243 TAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
6274308 AGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCCACC-AGTTTGG
259 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGG
* * **
6274372 GGCCAAAAATCCTTCTAAAAAACTTTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATG
324 GGCCAAAACTCCTTCGAAAAAA--TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
6274437 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
387 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6274502 ATTTACAAGCCAAAAAAATGGCATTGGCATGCGGAAATATGAAGATGT-CTCTAAACACACCTAC
452 ATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC-CTAAACACACCTAC
* *
6274566 CACCCTATCGATTCACGGCTTGTGCATCCCGTCTCTCTGGCCGATTTAGTGCCCGCCCGCCCGTC
516 CACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGTC
* *
6274631 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTGGATCGGACCA
581 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCA
* * **
6274696 AAGGCTGTGGCAGCAGGATTGGCATTACGCAGAGGGGGACCCGATCGATCCCTAG-CTTGCGCAT
646 AAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTAGACTTGCGCAT
* *
6274760 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
711 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * ** *
6274825 TCATTCCCGGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCG
776 TCATTCCCGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACG
* * **
6274890 AAAGCACATGCTGGGCTCGAGCATGTACTGGTGACCCATTTTTCTTTAC
841 ACAGCACATGCTGGGCTCGAGCATGTGCTGGTGACCCATTTTTCTTCGC
*
6274939 CGGGGCACCATCGTCGGACAACCTGACCGGCGACATTGGGGTTCCGACGAT-AGGGGGGCCGGGG
1 CGGGGCACCATCGTCGGACAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
6275003 GGGTTTCCACACGTGGTATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
66 GGGTGTCCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
6275068 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
131 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
6275133 ACCACTATAGTGTCTGAAATAGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
196 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
6275198 TTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATAAAAGGATCACGTCTACCAAGTTTTGGG
261 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGG
* * **
6275263 CCAAAACTCTTTCCGAAAAAATTTGAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAA
326 CCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
6275328 AATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
6275393 TACAATCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
455 TACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACC
* * * * * * *
6275458 CTATCGATCCACGGCTTGCACAACCCATCTCTTTGGCCGGCATAGTGCCCGCCCG-CC--C-GCT
520 CTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGTCTGCT
* * *
6275519 CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGG
585 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAAGG
* * * * * * *
6275584 TTGCGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGACCGATCCCT-GACATGCGCATCCCG
650 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTAGACTTGCGCATCCCG
* *** * *
6275648 CTCCTCTGG-CGGCTGAGTTTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCAT
715 CCCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * ** *
6275712 TCCCAGTCTAAGCATACGAAGTTTATT-CCAGTCTAAGATCGAACAAGATCGAGGGTTACGACAG
780 TCCCGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAG
* * *
6275776 CACATGCT-GGCTCGGGCATGTGCTGGTG-CCGAATTTTTCTTCGT
845 CACATGCTGGGCTCGAGCATGTGCTGGTGACC-CATTTTTCTTCGC
* * * * *
6275820 CGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGG
1 CGGGG------CA-C----CATCGTCGGACAACCTGACCGGCGACATTGGGGTTCCGACGATCGG
* * * * *
6275885 GGGTGCCGGGGGGGTGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGG
55 GGGGGCC-GGGGGG-GTGTCCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCC------T--
* *
6275950 CCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTC
110 ----TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
6276015 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
171 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATG
* *
6276080 GTCACAAAATCTTGTACACTTAGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACA
236 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
6276145 AGGATCACGTCCACCAAGTTTGGGGCCAAAGCTCCTTTTG-AAAAATTTTAAAAAATTGC-GAAC
301 AGGATCACGTCCACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAA-TCCTGAAC
* * * * **
6276208 CGTAAAAAGTTTCAAAATTCATAAAAAATAGAAAAGGAGTCGTCTTGAAATGAAACTTCACGTGA
364 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
6276273 A-G--TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
429 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGA
* * *
6276335 AGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGG-TG
494 AGATGTGCCTAAACACACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
6276399 AGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
559 A-CTTAGT------------GCCCGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
6276464 GAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCT-GCAACAGGATCGGCAGCACG
611 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAAGGTTG-TGGCAGCAGGATCGGCAGCACG
* * * * ** * *
6276528 CAAAGGGGGACCTGGTCGATCCC-CGACTTAAGCATCCCGCCCATCTGGCCGGCTGAGGGCCCGC
675 CAGAGGGGGACCCGATCGATCCCTAGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
6276592 ACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAAGCATACGGAGTTCA
740 ACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGAAGTTCA
* *
6276657 TTCCCAATCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCTG-GCATGTGC
805 TTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCACATGCTGGGCTC-GAGCATGTGC
* * * *
6276721 TGGTGTCGCATTTTTCTTTGT
869 TGGTGACCCATTTTTCTTCGC
* ** * *
6276742 CAGGGTGCCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
1 CGGGGCACCATCGTCGGACAACCTGACCGGCGACATTGGGGTT
6276785 TCGGTGATTC
Statistics
Matches: 2435, Mismatches: 239, Indels: 105
0.88 0.09 0.04
Matches are distributed among these distances:
880 2 0.00
881 32 0.01
882 38 0.02
883 72 0.03
884 122 0.05
885 1 0.00
887 4 0.00
888 446 0.18
889 37 0.02
890 68 0.03
891 797 0.33
892 44 0.02
893 7 0.00
894 6 0.00
895 33 0.01
901 1 0.00
902 1 0.00
903 120 0.05
905 1 0.00
906 75 0.03
907 211 0.09
908 2 0.00
911 33 0.01
915 10 0.00
916 2 0.00
918 1 0.00
919 120 0.05
920 74 0.03
921 40 0.02
922 33 0.01
923 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CGGGGCACCATCGTCGGACAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGG
GGGTGTCCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGG
CCAAAACTCCTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCC
TATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGTCTGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAAGGT
TGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTAGACTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
CCCGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGC
ACATGCTGGGCTCGAGCATGTGCTGGTGACCCATTTTTCTTCGC
Found at i:6275969 original size:13 final size:12
Alignment explanation
Indices: 6275934--6275965 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
6275924 GTGCTGGTAC
*
6275934 TTGGCCCTTATA
1 TTGGCCCCTATA
6275946 TTGGCCCCTATA
1 TTGGCCCCTATA
6275958 TTGGCCCC
1 TTGGCCCC
6275966 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:6276416 original size:4 final size:4
Alignment explanation
Indices: 6276407--6276436 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
6276397 TGAGCGTAGT
6276407 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
6276437 TCGTTTCGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:6276667 original size:26 final size:26
Alignment explanation
Indices: 6276617--6276669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6276607 GTTGACTTAG
**
6276617 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6276643 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6276669 G
1 G
6276670 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6277802 original size:26 final size:26
Alignment explanation
Indices: 6277766--6277818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6277756 GTTGACTTAG
* *
6277766 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6277792 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6277818 G
1 G
6277819 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6278690 original size:26 final size:25
Alignment explanation
Indices: 6278652--6278703 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
6278642 GTTGAGTTAG
6278652 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
6278677 GCATACGGAGTTCATTCCCATTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
6278703 G
1 G
6278704 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:6279327 original size:881 final size:880
Alignment explanation
Indices: 6276802--6279781 Score: 3779
Period size: 893 Copynumber: 3.3 Consensus size: 880
6276792 TTCGGGGGTT
* * * * **
6276802 GATCCCCAGCTTGCGCATCCCGCCCCTGTGGCCGGCTGAGCACCCACACGCTCGTTTTATGGGTT
1 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* ** *
6276867 GACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT-CCAGTCTATTATCGA
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* * * **
6276931 ACC-AGAGCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGTGGCATTTTTCTT
131 ACCGA-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* *** * * * * * * * *
6276995 CGCCCTAGCACTATCACCGGAGCAT-CATTGGACAACCTGACAGGCGACATTGGAGTTCGGACGA
195 CACCGGGGCACCATCGCCGGAGCATGC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
6277059 TCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTG
259 TC--GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
6277124 GCCCCCTATCCCTCATCAAACCTC-ATGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACA
322 GCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
6277188 GGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTAAAATGGTCACAAATC
386 GGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAATC
* * * * * *
6277253 TTGTACGCTCCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAACTACAAGGATCAGGTC
451 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
6277318 TACCAAGTTTGGGGCCAAAAGTCCTTCC-AAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTT
516 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
6277382 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGATACTTCATGTGAAGGCTTAAGGGA
581 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
6277447 TCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAC
646 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
6277512 ACACACCTACCACCCTATCGATCCACGGCTTGCACAACCCATCTCTTTGGCCGGCGTAGTGCCCG
711 ACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCG
** * * * * **
6277577 CCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGTATACGGAGTTCATT-CCAACTCTAAGATCAAAC
776 CCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAA-TCTAAGATCGGAC
* * **
6277641 CTGACCAAGGGTTACGGTAGTAGGATCGACAGCACGTAGAGAGAGACCCGGCC
840 C-GACCAAGGGTT---GTAG--GCAACG-C-GCA-G-AG-G-GAGACCCGATC
* * *
6277694 GATCCCCAGCTTGAGCGTCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
6277759 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * * *
6277824 ATCGGACCGAGGGTTGCGGCAGCACTTGTTGGGCTTGGGCATGTGCTGGTGTCGCCTTTTTCTTC
131 ACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * ** ** * **
6277889 ATCGGGGCACCATCGTCGGAGCATCCTCAGAGAACCTGACCTCCATCATTAGGGTTCCGGTGATC
196 ACCGGGGCACCATCGCCGGAGCATGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * * * * **
6277954 GGTGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTAGTTAGCCCGTATAATATC
261 GG-GGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
6278019 CCCCTTTCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
324 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
6278084 TTGTTGCCAGTAGCCGTTAAAGTGTCTCAAAATGGAGACAATTTTTTCAAATGGTCACAAAATCT
389 TTGTTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACATTTTTTTCAAATGGTCAC-AAATCT
* * * *
6278149 TGTACACTTCGAGCTTTTAGCGGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
452 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
6278214 ACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTT
517 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTT
* *
6278279 CAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATAAAACTTCAACGTGAAGGCTTAAGGG
581 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGG
*
6278344 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGAAATATGAAGATGTGCCTA
645 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * **
6278409 AACGCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCACAGTGCCC
710 AACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCC
*
6278474 GCCCGTTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGAC
775 GCCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGAC
* * * *
6278539 CGAACCGAGGGTTGT-GGCAGCGCGCAGAGGGGGTCCCGATC
840 CG-ACCAAGGGTTGTAGGCAACGCGCAGAGGGAGACCCGATC
* ** * ** * *
6278580 GATCCCCGGCTTGCGCATGTCGCCTCTCTGGCCGGTTGAGCGCTCGCACACTCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
6278645 GAGTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* *
6278709 ACCGAACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 ACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * *
6278774 GTCGGGGCACCATCGTCGGAGCATGC-CGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC
196 ACCGGGGCACCATCGCCGGAGCATGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * *
6278838 GGGGGCACCGGGCGGTGTGTGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGC
261 GGGGG--CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
6278903 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGT
324 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
6278968 TTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAATCTTG
389 TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAATCTTG
* * *
6279033 TACACTTTGAGTTTTTAGCTGAATTTTTTTTATGCAAGCCAACAAAAATACAAGGATCACGTCTA
454 TACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * **
6279098 CCAAGTTTTGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
518 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* **
6279163 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGAAATGAAACTTCACGTGAAGGCTTAAGGGACC
583 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
6279228 ATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
648 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
6279293 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGGCGTAGTGCCCGCC
713 ACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCC
* *
6279358 CGCCCTTTCGCTCGCTGGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGAT
778 CG----TTCGCT--C--GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGAT
* * * *
6279423 CGGACCGGACCAAGGGTAGCAGGATCGGTAACACGCAGAGGGAGACTCGATC
835 CGGACC-GACCAAGGGTTGTAGG--C---AACGCGCAGAGGGAGACCCGATC
* * * * * *
6279475 GATCCCCAGCTTGCGTATCCCACCCCTCCGCCCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
6279540 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
6279605 TCCGGA-TGAAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGT-CCGTATTTTTCTT
131 ACCGAACCG-AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * **
6279668 CACCGGGGCACCATCGCCGTAGCATCGC-CGAAGAACCTAACCGACGGCATTGGGGTTCTGGTGA
195 CACCGGGGCACCATCGCCGGAGCAT-GCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
6279732 TCAGGGGGCCGGGGGGCGTGTGCGCGCATTAATGTACGATGGGTGCTGGT
259 TC-GGGGGCC-GGGGG-GTGTGCGCACA-TGATGTGCGATGGGTGCTGGT
6279782 GGTTGACCCT
Statistics
Matches: 1804, Mismatches: 246, Indels: 70
0.85 0.12 0.03
Matches are distributed among these distances:
881 144 0.08
882 93 0.05
883 100 0.06
884 162 0.09
885 138 0.08
886 73 0.04
887 2 0.00
888 2 0.00
889 61 0.03
890 6 0.00
891 3 0.00
892 113 0.06
893 239 0.13
894 29 0.02
895 204 0.11
896 136 0.08
897 82 0.05
898 213 0.12
899 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (880 bp):
GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
ACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
ACCGGGGCACCATCGCCGGAGCATGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGT
TCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGACCA
AGGGTTGTAGGCAACGCGCAGAGGGAGACCCGATC
Found at i:6279584 original size:26 final size:26
Alignment explanation
Indices: 6279547--6279599 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6279537 GTTGACTTAG
6279547 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
6279573 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6279599 G
1 G
6279600 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6280720 original size:26 final size:26
Alignment explanation
Indices: 6280684--6280736 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6280674 GTTGACTTAG
*
6280684 GCATATGGAGTTCATT-CCGAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
6280710 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
6280736 G
1 G
6280737 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:6281614 original size:26 final size:26
Alignment explanation
Indices: 6281576--6281629 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
6281566 TGGGTTGACT
*
6281576 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
6281602 TAGGCATACGGAGTTCATTGCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
6281628 TA
1 TA
6281630 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:6283200 original size:26 final size:26
Alignment explanation
Indices: 6283164--6283216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6283154 GTTGACTTAG
*
6283164 GCATATGGAGTCCGTTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
*
6283190 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
6283216 G
1 G
6283217 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:6284081 original size:26 final size:26
Alignment explanation
Indices: 6284051--6284103 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6284041 GTTGACTTAG
*
6284051 GCATATGGAATTCATT-CCTAGTCTAA
1 GCATACGGAATTCATTACC-AGTCTAA
*
6284077 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAATTCATTACCAGTCTAA
6284103 G
1 G
6284104 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTACCAGTCTAA
Found at i:6284973 original size:26 final size:26
Alignment explanation
Indices: 6284937--6284999 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
6284927 TGGGTTGCCT
*
6284937 TAAGCATACGGACTTCATTCCCAGTC
1 TAAGCATACGGACTTCATTCCAAGTC
*
6284963 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGACTTCATTCCAAGTC
6284989 TAAG-AT-CGGAC
1 TAAGCATACGGAC
6285000 CGGACCGAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 4 0.12
25 2 0.06
26 28 0.82
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGACTTCATTCCAAGTC
Found at i:6285624 original size:4 final size:4
Alignment explanation
Indices: 6285615--6285644 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
6285605 CCGGCGTAGT
*
6285615 GCCC GCCC GCCC GCCC ACCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
6285645 TCGTTCTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.73, G:0.23, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:6286322 original size:885 final size:873
Alignment explanation
Indices: 6282488--6293462 Score: 9785
Period size: 887 Copynumber: 12.5 Consensus size: 873
6282478 TACGGAGTTC
*
6282488 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
** *
6282553 CCCTTAAAGAGCACATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
6282618 GACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
6282683 ATGCCAACAAAAATATAGGGATCACGTCTACCAAGTTCGGGGCGAAAACTACTTTCAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * ** * * *
6282748 TTAAAAAATCCCAAACTGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTTGTCTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
6282813 ATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
6282878 GCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
391 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
6282943 CCCGTCTCCCTGGCTGGTGTAGTACCCGCCCGCGCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
456 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** * * *
6283008 TACGAAGTTCATTCCTACTCTAAGGTCAGACTGGACCAAGGGTTGTGGTAGCAGGATCGACAGCA
521 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* *** * ** * * * *
6283073 CACAGAGGGGGACCCGGGTGATCCCTGGCTTGCTTATCCCGCCCCTTTAGCCGGTTAAGCGCCCG
586 CATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * * * *
6283138 GATGCTCATTTCTTAGGTTGACTTAGGCATATGGAGTCCGTTCCCAGTCTAAGCATATGGAGTTC
651 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--C
* * * * *
6283203 ATTCCCAGTCTAAGATCAAACCGGATCGACGGTTGCAGCAGCACATGCTGGGATTGGGCATGTGC
705 A-T--CAG-----GAT-----CGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
6283268 TAGTGCCGCATTTTTCTTCGTCGGGGCACCAT--T----G--T--CGGAGAACCTGACCGACTGT
757 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGCGGC
* * * *
6283323 ATTGGGGTTCCGACAATCAGGGGGTCGGGAAGGGTGTGCGCACATGATGTGTGA
822 ATTGGGGTTCCGACGATCGGGGGGCCGGG--GGGTGTGCGCACATGATGTGCGA
6283377 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
6283442 CCCTTAAAGAGTAGTTGAGATTTTATAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
6283507 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTCTTTTAT--
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
6283570 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * ** * *
6283635 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
6283700 ATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
6283765 GCACACAGAAATATAAAGATGTGCCTAAACCCATCTACCACCCTATCGATACACGGCTTGCGCAT
391 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
6283830 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCA
456 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * *
6283895 TACAGAGTTCATTCCCAGTCTAAGATC-GAACCAGATTGAGGGTTGCGGTAGCAGGATCGGCAGC
521 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
** * * ** *
6283959 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGTACTC
585 ACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
6284024 GCAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAATTCATTCCTAGTCTAAGCATACGGAGTT
650 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--
* * * * *
6284089 CATTACCAGTCTAAGATCAGACTGGACTGAGGGTTACAGAAGCACATGCTAGGCTCAGGCATGTG
704 CA-T--CAG-----GATCGGA-T---C-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
* *
6284154 CTGGTGCCGTATTTTTC-T--T--------CA-C--CGGAGCATCGCCGGAGAACCTGACCGGTG
756 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGCG
* * *
6284205 GCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGTGA
820 GCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGA
*
6284261 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
6284326 CCCTTAAAGAGCCTTTCAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
6284391 GACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
6284456 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACACATTCCAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
*
6284521 TTACAAAAT-TCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
261 TTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
6284585 CATGAAACTTC-TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
6284649 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGTCGCCCTATCGATCCACGGCTTGCGCA
390 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
6284714 TCCCGTATCTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
455 TCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * * * *
6284779 AGGCATACGGAGTTCATTCGCAGACCAAGATC-GAACTGGACCAAGGGCTGCTGTAGCAGGATCG
516 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCG
* ** * * *
6284843 AAAGCATGTAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
580 ACAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
6284908 CGCCCGCACGCTCGGTTCGTGGGTTGCCTTAAGCATACGGACTTCATTCCCAGTCTAAGCATACG
645 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
* * ** * *
6284973 GAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAACACATGCTGGGCTTGGGC
702 -AG--CA-T-C-AG-----GAT-----CGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
*
6285038 ATGTGCTGGTGCCGCATATTTCTTCGTCGGGGCACCA---TC---G--T--CGGAGAACCTGACC
751 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACC
* *** * *
6285093 GGCGGCATTAGGGTTCCG--G-T------G--ATTGGGTGTACGCCCATGATGTGCGA
816 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
6285140 TGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
6285205 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCCGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
6285270 GTCAC-TTTTTCAAATGGTCAC-AAATCTTGTACAATTCGAGTTTTTAGCTGAAATTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
6285333 ATAG-CAACAAAAATACAAGGATCACGTCTACTAAGTTTGGAGCCAAAACTCCTTCCAAAAAAAA
196 AT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * *
6285397 TTTAAAAAATCTCGAACCGTAAAAAG-GTAAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
260 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
6285461 CATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * ** * *
6285526 GGCACGTAGAAATACGAAGATGTGCCTAAACCCAACTGCCACATTTTCGATCCACAGCTTGCGCA
390 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * *
6285591 TCCTATCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCCCGCCCGCTCGTTCTATCG
455 TCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG----CCCGCCCGCTCG-T--TTC-GTCG
* **
6285656 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGC
508 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * ** * * *
6285721 AAGATCGACAGCACATGGAGGGGGACCCGATCGATCCTTGTCTTGCGCGTCCCACCCCTCTGGCC
573 AGGATCGACAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
6285786 GGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
638 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
6285851 G-ATC-GGATCGGATCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTTCGTAT
703 GCATCAGGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
** * * * *
6285914 TTTTCTTCGTCGGGGCACCATAATCGGAGCATCGCGAAAAAACCTAACTGGCGGCATTGGGGTTC
768 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCG-GAGAACCTGACCGGCGGCATTGGGGTTC
*** * *
6285979 CGGTAATCGGGGGGCCCAGGGGGTGTGCGGACATGATGTGCGA
832 CGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGA
*
6286022 TGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
6286087 CCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
6286152 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
6286217 ATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTTCTTCAAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * * * * *
6286282 TTGAAAAATCTGGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTGTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
6286347 GTGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTG
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
6286412 GCATGCACAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
391 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
6286477 CCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGCTCGTTTAGTCGGTTGGCTTAGGCA
456 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * *
6286538 TACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGAATTGGCAGCA
521 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
*** * * *
6286603 TGCAGAGGGGGTCCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCG
586 CATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
6286668 CACGCTCTTTTCATGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
651 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---
* * *
6286733 ATTCCCAATCTACGATCGGACCGAACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGC
704 -----C-ATC-AGGATC-G---G-ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** * * *
6286798 TGGTGCCGCATCTTTCTTCGCCGGGGCACCATCCCCGGAGCATCACCGGAGAACCTAACCGGCGA
757 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCGGAGAACCTGACCGGCGG
* * * *
6286863 CATTGGGGTTCTGACGATCGGGGGCCCGAGGGGTGTGCGCACATGATGTGCAA
821 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
6286916 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAACCCTCAAGAACTTACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
6286981 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
6287046 GACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGATGAATTTTTTT-TCC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
6287110 ATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
6287175 TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTTGTCTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
6287239 ATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGGATTTACAAGCCATAAAAGTGGCATTG
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
6287304 GCATACAAAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCAT
391 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
6287369 CCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCTGTCCGCTCGTTTCATCGGTTGGCTTAGGCA
456 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
6287434 TACAGCA-TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGC---A-C-ACAG-
521 TAC-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
6287492 ----AGA--GGGACCCGACCGATCCTCGGCTT-CTGCATGCCACCCCTCTGGTCGACTGAGCACC
585 ACATAGAGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** *** * *
6287550 CGCACGCTCGTTTTATTTTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TGGACC
649 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGGATC
* * * * * * **
6287613 AGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACC
714 GGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* **
6287678 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGG
779 GGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
*
6287743 GGGGCCGGGGGGT-TGCGCATATGATGTGCGA
842 GGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
6287774 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
6287839 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGCGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
6287904 AACACTTTGTTCAAATGGCCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * * *
6287969 ATGCCAACAAAAATAGAAGGATCAAATCTACCAAGTTTTGGGTCAAAAATCCTTCTAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
6288034 TGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
6288099 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAATTACAAGGCATAAAAATGGCATTG
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
***
6288164 GCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
391 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
6288229 CTCGGCTCTCTAGCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGATTGGCTTA
456 CCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
6288294 GGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCATAGCGAGGGTTGTGGCAGCAGGATCGGC
517 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * ** *
6288359 AGCACGTAGAAGGGGACCTGACCGATTCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTG
582 AGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
6288424 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
647 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---A
* * * *
6288489 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCAT
703 G--CA-T--CAG-----GATCGGAT-----CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* * * *
6288554 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATCACCGGAGAACCTGACCG
753 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCGGAGAACCTGACCG
* * * *
6288619 ACGGCATTGGGGTTCCGACGATCGGGGGGGTCGAGGGGGTGTTCGCACATGATGTGCAA
817 GCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA
*
6288678 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
6288743 CCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGTAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
6288808 GACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
6288873 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAGTCCTTCCAAAAACATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* *
6288938 TTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTTTTGC
261 TTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
6289002 CATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
6289067 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGTGCA
390 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
6289132 TCCCGTCTCTCTGGCCGGCATAGTGTCCACCCGCTCGTCCGCTCGTTTTGTCGGTTGGCTAAGGC
455 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *** *
6289197 ATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACTGAGGGTTACTATAGCAGGGTC-AGCAG
520 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAG
** * * * * ** * * *
6289261 CACGCAGAGTGGGACCC-AGCCGATCCCTGACTTACGCATCTTGCCCCTCTGGTCAGCTGAACGC
584 CACATAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
6289325 CCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAAG-ATCA-GAC
648 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGGAT
* * * ** * *
6289388 CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTTAGGCATGTGCTGGTGCCACAATTTTCTTCGT
713 CGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * ** * *
6289453 CGGGGCACCATCGTCGGAGCATCGCCGAAGAACTTGACCGGCCGCATTGAAGTTACGAC-ATTGG
778 CGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
** *
6289517 GGGGCCGGGGGGTGCACGCACATGATGTGCAA
842 GGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
6289549 TGGGTGCTTGTTCTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-C-CACA
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
6289612 CCC------A-C----------TTA-A---------CC----G---TTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
6289643 GACACTATTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * ***
6289708 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCGGGAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * ** * *
6289773 TTAAAAAAATCCCGAATCGTAAAAATTTTTGAAAATCATGAAATATAGAAAATGAGTCGTCTTGC
261 TT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * ** *** ** * * ** * *
6289838 CATGAAA--T-A--TGAA-G---ACGTG-CC--TAAACCCACCTACCA-CCCTATCAAT-CCA-C
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *** * ** * * ***
6289888 GGCTTGC-G---CATCCCG-TCT-CTCT-GGCCGACATA-GTGCC---CG--CC-C-GC-T-CG-
390 GGCATGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** * * * * *** * * * *
6289935 -TTTCGTCGGT-TGGCTTAGGCATA-TG---G--AGTTCATTCCG--AG--TCTTAGATTGGAC-
454 ATCCCGTCTCTCTGGC--CGGCGTAGTGCCCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGG-CT
* ** * * **
6289987 TAGACCGA-GG-GTTGCAGT---AG-C-AAGAT-TGA-CAG-CACGCAGAGG--G-GG-A-CCCG
515 TAGGCATACGGAGTT-CATTCCCAGTCTAAGATCAGACCAGAC-CG-AG-GGTTGCGGCAGCAGG
** *** * * * ** *** * ** * * **
6290037 ATCGATC--C-CTGACTTGTGCATCCCGCCCCTTTGGTCGAC-TGAAC-GCCCGCACGCTCGTTA
576 ATCGA-CAGCACATAGAGGGGGA-CCCG-ACCGATCCCCGGCTTGCGCATCCCGC-CCCTC-TGG
* **** ** * *** * * * *
6290097 CCTGGGTTGA-CATAGGCATACG-GAG-TTCATTCCTAGTC-TAAGCATACGAAGTTCATTCCCA
636 CC--GGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
6290158 GTATAAG-AT-TGGACCAGACCGAAGGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
697 GTCTAAGCATCAGGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *
6290221 CCGCATTTTTCTTCG-CTGGGGCACCA---TC---G---C-CGAAGAACCTGACCGGCGGCATTA
762 CCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGCGGCATTG
* * * * *
6290275 GGTTTTCGGCGATCGGGGGGGCTGGGGGGGTGTTCGCACATGATGTGCGA
826 GGGTTCCGACGATC-GGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* * * *
6290325 TGGGTTCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
6290390 CCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCTATTAAAGTGTCTAAAATGAG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
6290455 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
6290520 AAGCCAACAAAAATGCAAGGATCACATCTACCAAGTTTTGGGCCAAAACT-CTATTCGAAAAAAT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCAAAAAAAT
* * * *
6290584 TTTCAAAAATCCCAAACC--ACAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTG
260 TTTAAAAAATCTCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
6290647 CCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCAT
324 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
6290712 TGGCACGCAGAAATATTAAGATGTGCCTAAACCCCACCTACCACCCTATCGATCCACGATTTGCG
389 TGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
6290777 CATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCTGTTCATTTGGTCGGT
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCG-C---TCGTTTCGTCGGT
* * * * * *
6290842 TGGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGAT-TGAACCAGATCGAGGATTGTGGCAGCA
510 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCA
* * * * ** *
6290906 GGATC-AGCAACACGTAGAGGGGGACTCGGCCGATCCCCTACTTGCGCATCCCACCCCTCTGGCC
574 GGATCGA-CAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
6290970 AGCTGAACGCCCGCTCGCTCATTTAGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
638 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
6291035 GCGTACGGAATTGTTTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGTTGGG
703 --G--C---A-----T--CAG-----GAT-----CGGATCGAGGGTTACGGCAGCACATGCTGGG
** ** ** **
6291100 CTCGGGCATGTGCTTATGCCATATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGA
744 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGA
* ** *
6291165 ACCTGACCAGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACTTGATGTGC
808 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
6291230 -A
872 GA
* * *
6291231 GTGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACA-
1 -TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
6291295 CCCCTTCAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
65 CCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
6291360 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
129 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
6291425 GCATGCCAACAAAAATACAAGGATCAATGTC-ACCAGGTTTGGGG-CAAAACT-CTTCCGAAAAA
194 GCATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * * *
6291487 ATTTTTAAAAAATCCCGAACTGCAAAAAGTTTC-GAAATCATGAAAAATAGAAAACGAGTCGTCT
257 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
6291551 TGCCATG-----TCATGTGAAGGCATAAGAGA-CATTGTATG-A--TAC-AGCCAT-AACATGGC
322 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
6291605 ATT-GAACGCAGAAATATG-AGAT-TG-CT-AACCCA--TACCACCCTATCGATCC-CGGCTTGC
387 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
6291662 GCATCCCGTCTCTCTGGCCAGACTGTAGT-----CCCG--C-CCCGCTCGTTTTGTCGGTTGGTT
452 GCATCCCGTCTCTCTGGCC-GGC-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** **
6291719 TAGGCATAAC-GAGTTCATT-CCAGTCTAAGATCATTCCAGACTTA-GGTTGTCCCAGTATAAGA
515 TAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG---C-G-----G-
* * * * * *
6291781 CAGTCGATAGGTTTGGCATGGCGGCACACGCAGACGGGGACCCGCATCGAT-CCCGGCTTGCGCA
569 CAG-C---AGG-AT--C--GACAGCACA--TAGAGGGGGACCCG-ACCGATCCCCGGCTTGCGCA
* * * *
6291845 TCCCGCCCCTCTGGCCGGCTGAGCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGCAG
622 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
6291910 TTCATTCCCGGTCTAAGCATTCAGAGTTCATTCCTAGTCTAAAATCAGACCGGACAGAGCATTGC
687 TTCATTCCCAGTCTAAGCA-TCAG-G---A-T-C--G-----GATC-GA---G---G-G--TTAC
* * **
6291975 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTC
728 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
* ** *
6292040 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGAGAGGGCCGGGGGGTG
793 GGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTG
* *
6292105 TGCGCACTTGATGTGCGT
856 TGCGCACATGATGTGCGA
6292123 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
6292188 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CGCAGTAGCCATTAAAGTGTCTGAAATGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
6292252 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTTTTAT-TG
130 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
6292316 CATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * * * * * *
6292381 TTTAAAAATTCTCGAACCGCAAAAGGTTTTAAAAATTGA-GAAAAAAAAGAAAATGAAGTCATCC
260 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA-TCATG-AAAAATAGAAAACG-AGTCGT-C
*
6292445 TTGCCAATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATG-ATTTA-AAGCCATAAAAAT-
321 TTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * ***
6292507 GCCTTGG-A-ACAGAAATATAAAGATGTGGCCTAAACCCACCTA-CACCCAATCGATCCACAAAT
385 GCATTGGCATGCAGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * ** *
6292569 TGCGCATCTCGTCTATCTGGTCGACGTAGT--------GCCCGCCCGTTTATTTCTTCGGTTGGC
449 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
6292626 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCA-ACCAAACC-AAGGTTGTGGTA-CAGGTAT
514 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG-A-
* * ** * * * ** *
6292688 TGGCGAGCACCACCTAGTAGGGGTGATGCG-GCGCTCCTCTAGGCATAAAACGCTAATCTCGCCC
577 T--CGA-CAGCACATAG-AGGGG-GACCCGACCGATCC-C-CGGC-T--TGCGC--ATCCCGCCC
* *
6292752 CTACGGGCACAAAGGGACCCCATTTTGGCATCCTAATGCCCTGGCACGCT--TTTC-TGGGTTGA
630 CT-CTGGC-C----GG----C----T-G-A-GC----GCCC--GCACGCTCGTTTCGTGGGTTGA
*
6292814 CTTAGGCATACGGAGTTTATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCGGGC
672 CTTAGGCATACGGAGTTCATTCCCAG--T---C-T---AAG--CA-T--CAG-----GATC-GG-
* * * * * *
6292879 CAGACTGATGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTC-
716 -A-TC-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCG
* * * * * * * *
6292943 CCGAGGCACCA---T-----CAT--CGAAGAACCTTATCGGCGGCGTTAGGGTTCCGGCGATCGG
777 TCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
*
6292998 GGGGGCC-GGGGGTGTGCTCACATGATGTGCGA
841 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
6293030 T-GG-G-T-G--C-T-GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
6293087 CCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTCCCAGTAGCTATTAAAGTGTCTAAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
6293152 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
6293217 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** * * *
6293282 TTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCC
261 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
6293347 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
326 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-
* * *
6293412 TGCATGCAG-AATAT-AAGATGTGTGCTAAACCC-CATACCACCCTATCGATCC
390 GGCATGCAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCC
6293463 GACTGTCACA
Statistics
Matches: 8369, Mismatches: 1203, Indels: 1017
0.79 0.11 0.10
Matches are distributed among these distances:
773 26 0.00
774 2 0.00
775 8 0.00
776 75 0.01
777 1 0.00
778 6 0.00
781 2 0.00
782 7 0.00
783 11 0.00
784 110 0.01
785 14 0.00
786 5 0.00
787 7 0.00
788 4 0.00
789 7 0.00
790 1 0.00
791 2 0.00
793 3 0.00
794 5 0.00
795 14 0.00
796 2 0.00
797 1 0.00
798 1 0.00
799 4 0.00
802 4 0.00
803 8 0.00
804 6 0.00
805 2 0.00
806 1 0.00
807 2 0.00
809 4 0.00
810 45 0.01
811 16 0.00
812 135 0.02
813 1 0.00
814 2 0.00
815 10 0.00
816 5 0.00
817 3 0.00
819 3 0.00
820 3 0.00
821 5 0.00
822 8 0.00
823 14 0.00
824 9 0.00
825 5 0.00
826 3 0.00
827 4 0.00
829 3 0.00
830 5 0.00
831 5 0.00
832 6 0.00
833 3 0.00
834 1 0.00
835 136 0.02
836 61 0.01
837 1 0.00
838 3 0.00
839 1 0.00
841 1 0.00
842 4 0.00
843 4 0.00
844 7 0.00
845 4 0.00
847 1 0.00
849 1 0.00
851 1 0.00
852 7 0.00
858 301 0.04
859 180 0.02
860 162 0.02
861 5 0.00
862 7 0.00
863 6 0.00
864 82 0.01
865 4 0.00
866 8 0.00
867 5 0.00
868 9 0.00
869 182 0.02
870 44 0.01
871 135 0.02
872 52 0.01
873 25 0.00
874 114 0.01
875 5 0.00
876 138 0.02
877 259 0.03
878 27 0.00
879 160 0.02
880 6 0.00
881 17 0.00
882 158 0.02
883 24 0.00
884 443 0.05
885 476 0.06
886 162 0.02
887 541 0.06
888 14 0.00
889 456 0.05
890 48 0.01
891 450 0.05
892 216 0.03
893 134 0.02
894 233 0.03
895 126 0.02
896 124 0.01
897 88 0.01
898 22 0.00
899 199 0.02
900 315 0.04
901 42 0.01
902 135 0.02
903 18 0.00
904 464 0.06
905 12 0.00
906 76 0.01
907 268 0.03
908 134 0.02
909 31 0.00
910 23 0.00
911 3 0.00
913 1 0.00
914 1 0.00
915 1 0.00
916 2 0.00
919 84 0.01
920 10 0.00
921 2 0.00
922 7 0.00
924 1 0.00
925 1 0.00
927 1 0.00
928 6 0.00
930 5 0.00
931 1 0.00
932 4 0.00
933 1 0.00
936 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (873 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGGATCGG
ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGA
Found at i:6288490 original size:26 final size:26
Alignment explanation
Indices: 6288454--6288506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6288444 GTTGACTTAG
*
6288454 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6288480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6288506 G
1 G
6288507 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6290149 original size:26 final size:26
Alignment explanation
Indices: 6290112--6290164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6290102 GTTGACATAG
* * *
6290112 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
6290138 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
6290164 G
1 G
6290165 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:6291517 original size:907 final size:882
Alignment explanation
Indices: 6289841--6293462 Score: 3628
Period size: 891 Copynumber: 4.1 Consensus size: 882
6289831 GTCTTGCCAT
* * * *
6289841 GAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
1 GAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* * * *
6289906 CTCTGGCCGACATAGTGCCCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
66 CTCTGGCCGACGTAGT-CCCGCCCGCGT-TTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * ** * * *
6289970 CGAGTCTTAGATTGGACTAGACCGAGGGTTGCAGTAGCAAG-ATTG-A-CAGCACGCAGAGGGGG
129 C-AGTCTAAGA-TCAACCAGACCGA-GGTTGTGGCAGCAGGTA-TGCAGCAACACGCAGAGGGGG
* ** * * * *
6290032 ACCCGATCGATCCCTGACTTGTGCATCCCGCCCCTTTGGTC-GACTGAACGCCCGCACGCTC-GT
190 ACTCGGCCGATCCCT-ACTTGCGCATCCCGCCCCTCTGGCCAG-CTGAACGCCCGCACGCTCATT
* *
6290095 TACCTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGT
253 TA-CTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * * * *
6290160 ATAAGATTGGACCAGACCGAAGGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
317 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* * * *
6290225 ATTTTTCTTCGCTGGGG------CACCATCGCCGAAGAACCTGACCGGCGGCATTAGGTTTTCGG
382 ATTTTTCTTCACCGGGGCACCATCACCATCGCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGG
* * *
6290284 CGATCGGGGGGGCTGGGGGGGTGTTCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTAT
447 CGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
6290349 TTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCCATAAAGAGCATTTGAGATTTT
511 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
6290414 ACAGGTTTGCTGGCAGTAGCTATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAA
576 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
6290479 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATGCAAGGATCA
641 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * *
6290544 CATCTACCAAGTTTTGGGCCAAAACT-CTATTCGAAAAAATTTTCAAAAATCCCAAACCAC-AAA
706 CGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * *
6290607 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAATGCTTA
770 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
*
6290672 AGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
835 AGGGACCATTGTATG-ATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
6290721 GAAATATTAAGATGTGCCTAAACCCCACCTACCACCCTATCGATCCACGATTTGCGCATCCTGTC
1 GAAATATTAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
6290786 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCCTGTTCATTTGGTCGGTTGGCTTAGG
65 TCTCTGGCCGACGTAGT-----CCCG--C--CCG--CG--T-TT--TTT-GTCGGTTGGCTTAGG
* * *
6290851 CATGCGGAGTTCATTCCTAGTCTAAGATTGAACCAGATCGAGGATTGTGGCAGCAGG-AT-CAGC
113 CATACGGAGTTCATTCC-AGTCTAAGA-TCAACCAGACCGAGG-TTGTGGCAGCAGGTATGCAGC
* *
6290914 AACACGTAGAGGGGGACTCGGCCGATCCCCTACTTGCGCATCCCACCCCTCTGGCCAGCTGAACG
175 AACACGCAGAGGGGGACTCGGCCGAT-CCCTACTTGCGCATCCCGCCCCTCTGGCCAGCTGAACG
* * * * *
6290979 CCCGCTCGCTCATTTAGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCGTACGGA
239 CCCGCACGCTCATTTACTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GA
** * * * *
6291044 A-TTGTTTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGTTGGGCTCGGGCA
303 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
** * *
6291108 TGTGCTTATGCCATATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
368 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCA-C----CATCGCCGAAGAACCTGACC
* * * * * *
6291173 AGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACTTGATGTGC-AGTGTGT
428 GGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGT
* *
6291237 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACA-CCCCTT
492 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
6291301 CAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
557 -AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
6291366 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
621 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
6291431 CAACAAAAATACAAGGATCAATGTC-ACCAGGTTTGGGG-CAAAACT-CTTCCGAAAAAATTTTT
686 CAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTT
* * *
6291493 AAAAAATCCCGAACTGCAAAAAGTTTC-GAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
749 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * * * *
6291557 G-----TCATGTGAAGGCATAAGAGA-CATTGTATGA--TAC-AGCCAT-AACATGGCATT-GAA
814 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTACAAGCCATAAAAATGGCATTGGCA
6291611 CGCA
879 CGCA
* *
6291615 GAAATA-TGAGAT-TG-CT-AACCCA--TACCACCCTATCGATCC-CGGCTTGCGCATCCCGTCT
1 GAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* *
6291673 CTCTGGCCAGACTGTAGTCCCGCCC-CGCTCGTTTTGTCGGTTGGTTTAGGCATAAC-GAGTTCA
66 CTCTGGCC-GAC-GTAGTCCCGCCCGCG-T-TTTTTGTCGGTTGGCTTAGGCAT-ACGGAGTTCA
* ** *
6291736 TTCCAGTCTAAGATCATTCCAGACTTAGGTTGTCCCAGTATAAGACAGTCGATAGGTTTGGCATG
126 TTCCAGTCTAAGATCA-ACCAGACCGAGGTTGT----G-----G-CAG-C---AGGTAT-GCA--
* * * ** *
6291801 GCGGCACACGCAGACGGGGAC-CCGCATCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
173 GC--AACACGCAGAGGGGGACTCGGC--CGATCCCTACTTGCGCATCCCGCCCCTCTGGCCAGCT
* * * * * * *
6291865 GAGCGCTCACACGCTCGTTT-CGTGGGTTGACTTAGGCATATGCAGTTCATTCCCGGTCTAAGCA
234 GAACGCCCGCACGCTCATTTAC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * **
6291929 TTC-AGAGTTCATTCCTAGTCTAAAATCAGACCGGACAGAGCATTGCGGCAGCACATGCTGGGCT
298 TACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * *
6291993 CGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
362 CGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC--ACCATCGCCGAAGAAC
* * * * * * *
6292058 CTGACCGGCGGCATTGGGGTTTCGGTGATCGAGAGGGCCGGGGGGTGTGCGCACTTGATGTGCGT
422 CTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
6292123 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
487 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
6292188 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CGCAGTAGCCATTAAAGTGTCTGAAATGG
552 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
6292252 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTTTTAT-TG
616 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
6292316 CATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
681 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * * *
6292381 TTTAAAAATTCTCGAACCGCAAAAGGTTTTAAAAATTGA-GAAAAAAAAGAAAATGAAGTCATCC
746 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA-TCATG-AAAAATAGAAAACG-AGTCAT-C
*
6292445 TTGCCAATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGATTTA-AAGCCATAAAAAT-G
807 TTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTACAAGCCATAAAAATGG
* *
6292508 CCTTGG-A-ACA
871 CATTGGCACGCA
* * * * *
6292518 GAAATATAAAGATGTGGCCTAAACCCACCTA-CACCCAATCGATCCACAAATTGCGCATCTCGTC
1 GAAATATTAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * *
6292582 TATCTGGTCGACGTAGTGCCCG-CC-CGTTTATTTCTTCGGTTGGCTTAGGCATACGGAGTTCAT
65 TCTCTGGCCGACGTAGT-CCCGCCCGCGTTT-TTT-GTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
6292645 TCCCAATCTAAGATCAACCAAACCAAGGTTGTGGTA-CAGGTATTGGCGAGCACCAC-CTAGTAG
127 T-CCAGTCTAAGATCAACCAGACCGAGGTTGTGGCAGCAGGTA-T-GC-AGCAACACGC-AG-AG
* ** * *
6292708 GGGTGA-TGCGG-CGCTCCTCTAGGCATAAAACGCTAATCTCGCCCCTACGGGCACAAAGGGACC
186 GGG-GACT-CGGCCGATCC-CTA--C-T--TGCGC--ATCCCGCCCCT-CTGGC-C--A--G---
* *
6292771 CCATTTTGGCATCCTAATGCCCTGGCACGCT--TTT-CTGGGTTGACTTAGGCATACGGAGTTTA
232 -C----T-G------AACGCCC--GCACGCTCATTTACTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
6292833 TTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGACTGATGGTTACGACA
283 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* *
6292898 GCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTC-CCGAGGCACCAT---CAT-
348 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC-TTCACCGGGGCACCATCACCATC
* * * *
6292958 --CGAAGAACCTTATCGGCGGCGTTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGCTCACA
412 GCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACA
* *
6293020 TGATGTGCGAT-GG-G-T-G--C-T-GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
477 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
6293077 AACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTCCCAGTAGCTATTAAAGTGT
542 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
6293142 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
607 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
6293207 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
672 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** * *
6293272 CGAAAAAAGTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
737 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
6293337 TCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
802 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAA
* *
6293402 AATGGCATTATGCATGCA
866 AATGGCATT-GGCACGCA
* *
6293420 G-AATA-TAAGATGTGTGCTAAACCC-CATACCACCCTATCGATCC
1 GAAATATTAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCC
6293463 GACTGTCACA
Statistics
Matches: 2300, Mismatches: 280, Indels: 304
0.80 0.10 0.11
Matches are distributed among these distances:
870 6 0.00
871 17 0.01
872 28 0.01
873 4 0.00
874 1 0.00
875 3 0.00
876 2 0.00
879 3 0.00
880 23 0.01
881 56 0.02
883 4 0.00
884 3 0.00
885 6 0.00
886 24 0.01
887 23 0.01
888 5 0.00
889 14 0.01
890 45 0.02
891 471 0.20
892 33 0.01
893 27 0.01
894 28 0.01
895 18 0.01
896 53 0.02
897 255 0.11
898 31 0.01
899 198 0.09
900 137 0.06
901 40 0.02
902 12 0.01
903 11 0.00
904 20 0.01
905 17 0.01
906 72 0.03
907 270 0.12
908 138 0.06
909 34 0.01
910 23 0.01
911 3 0.00
913 1 0.00
914 1 0.00
916 1 0.00
919 121 0.05
920 12 0.01
922 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (882 bp):
GAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTCCCGCCCGCGTTTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCA
GTCTAAGATCAACCAGACCGAGGTTGTGGCAGCAGGTATGCAGCAACACGCAGAGGGGGACTCGG
CCGATCCCTACTTGCGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACGCTCATTTACTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT
CACCGGGGCACCATCACCATCGCCGAAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGATTTACAAGCCATAAAAATGGCATTGGCACGCA
Found at i:6292856 original size:26 final size:26
Alignment explanation
Indices: 6292820--6292870 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6292810 TTGACTTAGG
* *
6292820 CATACGGAGTTTATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
6292846 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
6292871 GATCGGGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:6294417 original size:26 final size:26
Alignment explanation
Indices: 6294388--6294440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6294378 GTTGACTTAG
* *
6294388 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6294414 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6294440 G
1 G
6294441 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6295222 original size:26 final size:26
Alignment explanation
Indices: 6295185--6295237 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6295175 GTTGACTTTG
6295185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6295211 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6295237 G
1 G
6295238 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6295746 original size:810 final size:794
Alignment explanation
Indices: 6294052--6296452 Score: 3712
Period size: 810 Copynumber: 3.0 Consensus size: 794
6294042 TGCCATGAAA
*
6294052 CTTTACGTGAAGGCTTAACGGG-CCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
1 CTTTACGTGAAGGATTAA-GGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** * * *
6294116 AAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCGAATCGATCCACAGATTGCGCATCCCGT
65 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGT
*
6294180 CTCTCTGGTCGGCGTAGTG--C-CCGCCCGTTCA-TTTCGTCGGTTGGCTTAGGCATACGGAGTT
130 CTCTCTGGTCGGCGTAGTGCCCGCCGCCCGCT-AGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
6294241 CATTCCCAGTCTAAGATTAGACCGGACCG-GGGATTATGGCAGTAGGATTGGCAGCACGCAGAAG
194 CATTCCCAGTCTAAGATCAGACCAGACCGAGGG-TTATGGCAGCAGGATCGGCAGCACGCAG-AG
* ** *
6294305 GGGA-CGCGACCGATCCCCGGTTTGCGCATCCCGCCCCTCT-GGCTGATTGAGCACCCGCACGCT
257 GGGACCCCGA-CGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCTG-TTGAGCACCCGCACGCT
* *
6294368 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCC
320 CGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCC
6294433 AGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGC
384 AGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGC
6294498 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGTCAGGCGATCGG
449 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGTCAGGCGATCGG
6294563 GGGGGGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGC
514 GGGGGGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGC
6294628 CCCCTATCCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
579 CCCCTATCCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
6294693 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
644 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
6294758 GTACACATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACATCTA
709 GTACACATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACATCTA
6294823 CCAAGTTTGAAGCCAAAACTC
774 CCAAGTTTGAAGCCAAAACTC
6294844 CTTTACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
1 CTTTACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
6294909 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
*
6294974 TCTCTGGTCGGCGTAGTGCCCGACCGCCCGCTAGTTTGGTCGGTTGGCTTAGGCATACGGAGTTC
131 TCTCTGGTCGGCGTAGTGCCCG-CCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
6295039 ATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGTGACAGCAGGATCGGTAGTACG-TGAGGGG
195 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * *
6295103 AACCCCGATCGATCCTCGACTTGTGCATCCCGCCCCTCTAGCCTGCTGAGCTCCCGCACACTCAT
260 -ACCCCGA-CGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCTGTTGAGCACCCGCACGCTCGT
6295168 TTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGT
323 TTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGT
*** ** * * * * * *
6295233 CTAAGATCGGATTGGACCGAGGGTTACGGTAGCACATGCTAGGCTCAAGCATGTGCTGGTGTCGC
387 CTAAGATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGCCAC
* ** *
6295298 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGCGGTTTAGGGTT
452 ATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--A-C-CTG-ACC-GA-CGGC--ATT---G-T
* * * ** * * *
6295363 CCGACGATC-GGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
503 CAGGCGATCGGGGGGGGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGAC
* ** * * *
6295426 CTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAATAACATTTGA
568 CTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCATA-CCCCCTTAAAGAGCATTTGA
**
6295491 GATTTTACAGGTTTGGGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
632 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
6295556 TCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAA
697 TCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAA
6295621 GGATCACATCTACCAAGTTTGAAGCCAAAACTC
762 GGATCACATCTACCAAGTTTGAAGCCAAAACTC
6295654 CTTTACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
1 CTTTACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
6295719 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
* *
6295784 TCTCTGGTCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
131 TCTCTGGTCGGCGTAGTGCCCG-CCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
6295849 ATTCCCTGTCTAAGATCAGGCCAAACTGAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGG
195 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGA-GGG
* * * * * *
6295914 GACCCGGACGATCCCCGACTTGCGCATCCTGCCCTTCTAGCCGGTTGAACGCCCGCACGCTCGTT
259 GACCCCGACGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCTGTTGAGCACCCGCACGCTCGTT
*
6295979 TCGTAGGTTGA-TTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTC
324 TCGTGGGTTGACTTT-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTC
6296043 TAAGATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGCCACA
388 TAAGATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGCCACA
*
6296108 TTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCAACGGCATTGTCAGGCGATCGGGGGG
453 TTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGTCAGGCGATCGGGGGG
6296173 GGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGCCCCC
518 GGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGCCCCC
6296238 TATCCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
583 TATCCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
6296303 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
648 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
6296368 ACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
713 ACATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACATCTACCAA
6296433 GTTTGAAGCCAAAACTC
778 GTTTGAAGCCAAAACTC
6296450 CTT
1 CTT
6296453 CTGAAAAAAT
Statistics
Matches: 1450, Mismatches: 128, Indels: 58
0.89 0.08 0.04
Matches are distributed among these distances:
791 3 0.00
792 67 0.05
793 69 0.05
795 14 0.01
796 190 0.13
797 356 0.25
798 7 0.00
799 2 0.00
800 1 0.00
801 5 0.00
802 2 0.00
803 6 0.00
804 3 0.00
805 5 0.00
806 1 0.00
807 2 0.00
808 1 0.00
809 182 0.13
810 514 0.35
811 16 0.01
812 4 0.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (794 bp):
CTTTACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
TCTCTGGTCGGCGTAGTGCCCGCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAGGGGA
CCCCGACGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCTGTTGAGCACCCGCACGCTCGTTTC
GTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAA
GATCGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGCCACATTT
TTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGTCAGGCGATCGGGGGGGGT
CGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATATTGGCCCCCTAT
CCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACA
TCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
TGAAGCCAAAACTC
Found at i:6296033 original size:25 final size:26
Alignment explanation
Indices: 6295995--6296046 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
6295985 GTTGATTTAG
6295995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6296021 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6296046 G
1 G
6296047 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6298181 original size:864 final size:867
Alignment explanation
Indices: 6295661--6301749 Score: 5716
Period size: 864 Copynumber: 6.8 Consensus size: 867
6295651 CTCCTTTACG
* * *
6295661 TGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
*
6295726 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
6295791 TCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCT
131 CCGACGTAG-G-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** * *
6295856 GTCTAAGATCAGGCCAAACTGAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGG
194 GTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCC-G
* ** * * * * * *
6295921 A-CGATCCCC-GACTTGCGCATCCTGCCCTTCTAGCCGGTTGAACGCCCGCACGCTCGTTTCGTA
258 ACCGATCCCCAG-CTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
*
6295984 GGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGAT
322 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-G---------A--C------
* * * * * *
6296049 CGGACCAGACCGAGGGTTGTGGCAACACATGCTAGGCTCAGGTATGTGCTGGTGCCACATTTTTC
367 C-G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** *
6296114 TTCGTCGGGG---CA----C----CATCGTCGGAGAACCTGACCAACGGCATT---G-TCAGGCG
427 TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCG
* * * * * *
6296164 ATCGGGGGGGGTCGGGGGGGTGTGCAAACATGATGTGTGATGGGTGTTGGTACTTGGACCTTATA
492 ATCGGGGGGGCTAGGGGGTGTGTGC--ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
6296229 TTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTA
555 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
6296294 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
620 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
6296359 ATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
685 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * *
6296424 GTCTACCAAGTTTGAAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAC
750 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAA
* * * *
6296488 GTTTCTAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACG
814 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * * * * * *
6296542 TGAAGGATGAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGTATTGGCACGTATACATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
6296607 TGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
6296672 GCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTACGCATACGGAGTTCATT
131 CCGACGTA--G---G-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
6296737 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCCGGATCGCCAGCACGCTGAAGGGGAC
190 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGAC
** * * * *
6296802 CCGACCGATCCCTGGCTTGCACATCCGACCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
255 CCGACCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
* ** * *
6296867 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATATTGGATCGAGGGTTGCA
320 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG--GACCGGACCGAGGGTTGCG
** * * * * *
6296932 GCAGCACATATTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTATTCATCGGGGCACCTTCACCG
383 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * * * *
6296997 GAGCATTGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCT-GGGGGGGT
448 GAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGT
* * *
6297061 GTGCAAACATGATGTGTGATGGGTACTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCA
513 GTGC--ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
6297126 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTAC-GCGTTTGCTGCCAGTAGCC
576 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCC
* * *
6297190 ATTAAAGTGTCTTAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTT
640 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** **
6297254 TTAGCTGAATTTTAATGTGCATAACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
705 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
6297319 AAATTCCTTTCGAAAAAATTTTCAAAAATCCTGAATCGCAAAAAGTTTCAAAAATCGTGAAAAAT
770 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
*
6297384 AAAAAACGAGTCGTCTTGCCATGAAACTTCACA
835 AGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* ** * * * *
6297417 TGAAGGCTTAAGTGATGATTGTATGAGTTTACAAGCTATAAAAATGGCATTGGCATGCAAAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
6297482 TGAAGATGTACCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT-TCA
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-G
* * * * *
6297546 GCCGGCGTA-G-CGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGACTTCGTTCCAAG
130 GCCGACGTAGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *
6297609 TATAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCC-AG
195 TCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-
** * * * *
6297673 TTGATCCCCAGCTTGCACATCCCACCCCTCTGGTCGGTTGAGCGACCGCACGCTCATTTCATGGG
259 CCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* *
6297738 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* *
6297803 CATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCAT
389 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
** *
6297868 CGTCGGAGAACCTGACTGGGGGCATTAGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGTGCAC
454 CGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGTGCAC
* *
6297933 ATGATGTGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
519 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* * *
6297998 GAACTCACGCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CATGTAGCCGTTAAAGT
584 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGT
*
6298062 GTCTGAAATGGGGACAC-TTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
648 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * *
6298126 ACCTTTTTGTGCAGGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
713 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
6298191 TCCGAAAATATTTTAAAAAGTCCTAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAATATG
778 TCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
6298256 AGTCGTCTTGCCATGAAACTTCACA
843 AGTCGTCTTGCCATGAAACTTCACA
** * *
6298281 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTATAAAAATGGCATTGGCACACAGATATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* ** *
6298346 TGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACTACTTGCGCATCCCGTCTCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
6298411 CCGACGTAGTGCCCCCCCGCCTGCCAGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTT
131 CCGACGTAG-G-----CCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
6298476 CATTCCCAGTCTAAGATCAGACC-GAATCAAGGGATGCGGCAGCAGGATC-AGCAGCACGAAGAG
186 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGACAGCAGGATCGA-CAGCACGCAGAG
* * ** * * *
6298539 GGGGACCCGATCGATCCTCAGCTTGTGCATCCCACCCCTCTGGCCGACTGAGTGCCCGTACGCTC
249 GGGGACCCGACCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
6298604 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCAA
314 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---AAG---A-T-C--
* *
6298669 GTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCC
363 G-----GA-C----CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * ** * *
6298734 GCATTTTTCTTCATCGGGACACCATCGTCGGAGTTCATTCCCAGCCTAAGATTGGACCAGACCAA
418 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAG--CA-T--C-G--TCGGA--GAACCTG----A
* * * ****** *
6298799 CAGTTGAGACAGCACATCCT-GGGCTCGGGC-AT-GTGCTGGTGCGGCATTTTTCTTCGTCGGGG
469 C---T--GAC-G-GCAT--TGGGGTTCCGGCGATCG-G--GG-G-GGC-TAGGGGGT-GT--GTG
* * * * * * ** ******* * *
6298861 AACCTGACCGGTG-GAATTAGGGTTCCGATGATCGGAGGGGCCGGCGGGGTGTGCGCACATGATG
516 CACATGA--TGTGCG-A-T-GGGTGCTGGT-A-C---TTGGCCCTTATATTG-GC-CCCCT-A--
** ** ** ** * * *** * * *
6298925 TGCGATGGGTGCTGGTA-CTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACA-TCGAGAA
566 T-CCCT-CAT-C--AAACCTTGAGAACTCACA----CCCCC--T---T-AAAGAGCATTTGAGAT
* * **** *****
6298987 CTCACACCCCCTTAAAGGGCATTTCAAATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCT
616 TTTACA-GGTTTGCTGC----------------------------CAGTAGCCATTAAAGTGTCT
* * * *
6299052 GAAATCGGGACACTTTTTTCGAATGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
652 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** * *
6299117 TTTTGTGCATGCCAACAAAAATACAGGGATCATATCTACCAAGTTTGGGGCCAAAAATCCTTCCC
717 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
6299182 AAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
782 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
6299247 GTCTTGCCATGAAACTTCACG
847 GTCTTGCCATGAAACTTCACA
* *
6299268 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGTCATAAAAATGGCATTGGCACGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
*
6299333 TGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * *
6299398 CAAATGTA-G-TGCCAGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
131 CCGACGTAGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** * *
6299461 CTATGATCGGACTGGATTGAGGGTTGC-AGCAGCAGGATC-AGCAGCACGCAGAGTGGGACCCGA
196 CTAAGATCAGACCAGACTGAGGGTTGCGA-CAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA
* * ** * *** * * * *
6299524 CTGATCCCCGGCTTATACATCTCATGTCTCTGCCCGGCAGAGCGTCCGCACGCTCGTTTCGTGGG
259 CCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
** * *
6299589 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGTAGCA
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * * *
6299654 CATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCAA
389 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * * **
6299719 CGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGTGCAC
454 CGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGTGCAC
* * ** *
6299784 ATGATGTGCGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCTATATCCCTCATCACACCTTGA
519 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
6299849 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
584 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
6299914 TCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
649 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
6299979 TTTTTTTGTGCATGCCAACAAAAATACAAGAAACACGTC-ACCAA-TATTGGGGCCAAAACTCCT
714 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCCT
** * * *
6300042 TTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACG
778 TCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
6300107 AGTCGTCTTGCCATGAAACTTCACG
843 AGTCGTCTTGCCATGAAACTTCACA
** * **
6300132 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCAATGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
6300197 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTCGGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
6300262 CCGATGTA-G-TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
131 CCGACGTAGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * * * *
6300325 CTAAGATTGGACCAGACTGAGGGTTGCAACAGCAGGA-CTGGCAGCATGCAGAGGGGGACCCGAT
196 CTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATC-GACAGCACGCAGAGGGGGACCCGAC
** **** * * *
6300389 CGATCCCTGGCTTG-AGCATCCCGTATCTCTGGCCGGCTGAGCGCTCGCACACTCGTTTCGTGGG
260 CGATCCCCAGCTTGCA-CATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
*
6300453 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C
*
6300518 GGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGCATTTTTCT
368 -G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
6300583 TCATCGGGGCACCAT---C---G--T--T-GGAGAACCTGA-TCGACAGAATTGAGCTTCCGGCA
428 TCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACT-GACGGCATTGGGGTTCCGGCG
* * * * * *
6300636 ATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGAGTGATGGGTGCTAGTACTTGGCCCTTATA
492 ATCG-GGGGGGCTA-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
6300701 TTGGCCCCCTATCCCTCATCCAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTA
555 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
6300766 CAGGTTTGCTGCCAGTAGCTATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAA
620 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
6300831 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCAC
685 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
6300896 GTCTACCAAGTTTGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAAT-GTCGAAACGTAAAAA
750 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAA
* *
6300960 GTTTCAAAAATCGTGAAACATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
814 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
*
6301014 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
6301079 TGAAGATGTGCCTAAACCCACCCATCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
6301144 CCGGCGTAGTGCCCGTCCGTCCGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTT
131 CCGACGTAG-G-CCG--C--CCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
6301209 CATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGCGGCAGCAGGATCGATAGCATGCAGAGG
186 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGG
* * * * * ** **
6301273 GGGACCCGACCGAT-CCCAGGCTTCCACATCTCGCCCCTCTAGCAGGCTGAGC-CTGTGCACGGA
250 GGGACCCGACCGATCCCCA-GCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGC-CCGCACGCT
*
6301336 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCC
313 CATTTCGTGGGTTGACTTAGGCATAC---G----------G----AG--T------T-CATTCCC
* *
6301401 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTACATGCTGGGCTCGGGCATGTGCTGGTGC
352 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * *
6301466 TACATTTTTGTTCGTCGGGGCACCATCACCGGAGCATCGACAGAGCATCGCCGGAGAACC-AAAT
417 CGCATTTTTCTTCGTCGGGGCACCAT---C---GC--CG---GAGCATCGTCGGAGAACCTGACT
* * * * **
6301530 CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGCGGTGTGCACACATGATGTGCGATGG
471 -GACGGCATTGGGGTTCCGGCGATCGGGGGGG-CTAGGG-GGTGTGTGCACATGATGTGCGATGG
*
6301595 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
533 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
6301660 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
598 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
6301725 ACTTTTTTCAAATGGTCACAGAATC
663 ACTTTTTTCAAATGGTCACAAAATC
6301750 AGAGGGGGAC
Statistics
Matches: 4310, Mismatches: 620, Indels: 521
0.79 0.11 0.10
Matches are distributed among these distances:
862 55 0.01
863 5 0.00
864 850 0.20
865 234 0.05
866 15 0.00
867 191 0.04
868 1 0.00
869 2 0.00
872 2 0.00
873 26 0.01
874 1 0.00
875 301 0.07
876 330 0.08
877 18 0.00
878 1 0.00
879 28 0.01
880 7 0.00
881 356 0.08
882 228 0.05
883 4 0.00
884 7 0.00
885 191 0.04
886 3 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 75 0.02
892 1 0.00
893 9 0.00
894 228 0.05
895 2 0.00
897 4 0.00
898 2 0.00
899 6 0.00
901 1 0.00
902 80 0.02
903 6 0.00
904 3 0.00
905 5 0.00
906 1 0.00
907 3 0.00
908 2 0.00
909 3 0.00
910 5 0.00
911 9 0.00
912 5 0.00
913 2 0.00
914 1 0.00
915 10 0.00
916 209 0.05
917 2 0.00
918 5 0.00
919 5 0.00
920 22 0.01
921 1 0.00
922 4 0.00
923 7 0.00
924 11 0.00
925 4 0.00
926 4 0.00
927 9 0.00
928 8 0.00
929 4 0.00
930 3 0.00
931 7 0.00
933 4 0.00
934 1 0.00
935 9 0.00
937 1 0.00
939 5 0.00
940 6 0.00
941 5 0.00
942 3 0.00
943 2 0.00
944 1 0.00
945 1 0.00
946 2 0.00
947 3 0.00
948 5 0.00
949 78 0.02
950 1 0.00
952 4 0.00
954 3 0.00
957 10 0.00
958 5 0.00
959 1 0.00
961 1 0.00
962 1 0.00
963 1 0.00
966 3 0.00
969 1 0.00
970 1 0.00
973 1 0.00
975 172 0.04
976 4 0.00
978 1 0.00
979 1 0.00
985 1 0.00
986 29 0.01
987 315 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (867 bp):
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
GATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
TCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTAGGGGGTGTGTGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACA
Found at i:6300498 original size:26 final size:26
Alignment explanation
Indices: 6300462--6300514 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6300452 GTTGGCTTAG
6300462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6300488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6300514 G
1 G
6300515 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6300968 original size:26 final size:26
Alignment explanation
Indices: 6300929--6300978 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
6300919 ATCATTCCGA
*
6300929 AAAAATTTTAAAAAAT-GTCGAAACGT
1 AAAAAGTTTAAAAAATCGT-GAAACGT
*
6300955 AAAAAGTTTCAAAAATCGTGAAAC
1 AAAAAGTTTAAAAAATCGTGAAAC
6300979 ATAGAAAACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCGTGAAACGT
Found at i:6300986 original size:27 final size:26
Alignment explanation
Indices: 6300929--6300986 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
6300919 ATCATTCCGA
* *
6300929 AAAAATTTTAAAAAATGTCGAAACGT
1 AAAAAGTTTAAAAAATGTCGAAACAT
*
6300955 AAAAAGTTTCAAAAATCGT-GAAACAT
1 AAAAAGTTTAAAAAAT-GTCGAAACAT
6300981 AGAAAA
1 A-AAAA
6300987 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.57, C:0.09, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATGTCGAAACAT
Found at i:6301386 original size:26 final size:26
Alignment explanation
Indices: 6301356--6301408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6301346 GTTGACTTAG
* *
6301356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
6301382 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
6301408 G
1 G
6301409 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:6302729 original size:26 final size:26
Alignment explanation
Indices: 6302693--6302745 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6302683 GTTTACTTAG
6302693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6302719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6302745 G
1 G
6302746 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6303631 original size:26 final size:26
Alignment explanation
Indices: 6303594--6303646 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6303584 GTTGACTTCG
6303594 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
* * *
6303620 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
6303646 G
1 G
6303647 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Done.