Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 56 of 120
Found at i:6472738 original size:26 final size:26
Alignment explanation
Indices: 6472702--6472754 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6472692 GTTGACTTAG
6472702 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6472728 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6472754 G
1 G
6472755 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6473405 original size:895 final size:895
Alignment explanation
Indices: 6471619--6474668 Score: 5168
Period size: 895 Copynumber: 3.4 Consensus size: 895
6471609 CCCGCCCGAT
*
6471619 CGCCCGCTCGTTTCATCAGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGATTCAGACTA
1 CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA-TCAGACTA
*
6471684 AAGCGAGGATTGTGGCAGCAAGATCGACAGCATGTAGAGGGGGACCCGGCCGATCCCTGGCTTGC
65 AAGCGAGGATTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGC
* *
6471749 GCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACG
130 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACG
6471814 GAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGT
195 GAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGT
6471879 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
260 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
6471944 GCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGG
325 GCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGG
6472009 GGTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
390 GGTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
6472074 ATCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
455 ATCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
6472139 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
520 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
6472204 GTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTTGGGC
585 GTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTTGGGC
6472269 CAAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAA
650 CAAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAA
6472334 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
715 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
6472399 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCT
780 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCT
*
6472464 ATTGATCCACGGCTTGTGGATCCCGTCTCTCTGGCCGACGTAGTGCCCTCC
845 ATTGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCGACGTAGTGCCCTCC
**
6472515 CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGG
1 CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAA
* ** * *
6472580 ACCGAGCTTTGTGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
66 AGCGAGGATTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
* * *
6472645 CATCCCGCCCTTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
131 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGG
6472710 AGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTT
196 AGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTT
6472775 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
261 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
6472840 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGG
326 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGG
*
6472905 GTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
391 GTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
6472970 TCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
456 TCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
6473035 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGG
521 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGG
6473100 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTTGGGCC
586 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTTGGGCC
6473165 AAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
651 AAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
6473230 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
716 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
6473295 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTA
781 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTA
6473360 TTGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCGACGTAGTGCCCTCC
846 TTGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCGACGTAGTGCCCTCC
* *
6473410 CGCCCGCTCGTTTCATCAGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGATTAGACTAA
1 CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAA
*
6473475 AGCGAGGATTGTGGCAGCAAGATCGACAGCATGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
66 AGCGAGGATTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
* *
6473540 CATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGG
131 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGG
6473605 AGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTT
196 AGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTT
6473670 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
261 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
6473735 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGG
326 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGG
6473800 GTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
391 GTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
6473865 TCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
456 TCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
6473930 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
521 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGG
** * * ** *
6473995 TTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGG
586 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTT---GG
** * * * * * * * *
6474060 GGAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAGGCTTCAAAAATCATGAAA
648 GCCAAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAA
* * *
6474125 AACAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTGTATGAATT
713 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
6474190 TACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACAACC
778 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACC
* * * * *
6474255 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGGCGGCGTAGTGCTCGCCCGTCCGCC
843 CTATTGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCGACGTA--G-T-GCCC-T---CC
* * * * *
6474316 CGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCAGA-TCG
1 CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACT-A
* * * * * * * * * ** * *
6474380 GATCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGC
65 AAGCGAGGATTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGC
* * *
6474445 GCATCCCACCCCTCTGGCCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
130 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACG
* * * * **
6474510 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCAATCCCAGTCTAAGATCGGATCGGATCGAGGGT
195 GAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGT
** * * *
6474575 TGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATATTTCTTTACCAGGGG-ACCAT
260 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC-GGGGCACCAT
** ** *
6474639 CGCTGGAGCATCGTGGGGGAACCTGACCGG
324 CGCCAGAGCATCGCCGGAGAACCTGACCGG
6474669 TGGTAGCAGG
Statistics
Matches: 2037, Mismatches: 104, Indels: 16
0.94 0.05 0.01
Matches are distributed among these distances:
895 1445 0.71
896 55 0.03
898 219 0.11
900 1 0.00
901 1 0.00
902 4 0.00
903 1 0.00
905 1 0.00
906 306 0.15
907 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (895 bp):
CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAA
AGCGAGGATTGTGGCAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTT
ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGGCCGGGGGG
GTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGG
TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAATTTGGGCC
AAACTCCTTTCAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTA
TTGATCCACGGCTTGCGGATCCCGTCTCTCTGGCCGACGTAGTGCCCTCC
Found at i:6473633 original size:26 final size:26
Alignment explanation
Indices: 6473597--6473649 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6473587 GTTGACTTAG
6473597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6473623 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6473649 G
1 G
6473650 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6474539 original size:26 final size:26
Alignment explanation
Indices: 6474503--6474555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6474493 GTTGACTTAG
*
6474503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
6474529 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
6474555 G
1 G
6474556 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:6474798 original size:26 final size:26
Alignment explanation
Indices: 6474762--6474826 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
6474752 GTTGACTTAG
*
6474762 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6474788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6474814 GCATAAGGAGTTC
1 GCATACGGAGTTC
6474827 GGATCGGACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6475695 original size:26 final size:26
Alignment explanation
Indices: 6475659--6475711 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6475649 GTTGACTTAG
6475659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6475685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6475711 G
1 G
6475712 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6476584 original size:26 final size:26
Alignment explanation
Indices: 6476547--6476599 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
6476537 GTTGACTTAG
6476547 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6476573 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
6476599 G
1 G
6476600 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6478271 original size:26 final size:26
Alignment explanation
Indices: 6478241--6478295 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
6478231 ATGGGTTGAC
*
6478241 CTAGGCATATGGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
6478267 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
6478293 CTA
1 CTA
6478296 AGATCGGACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (26 bp):
CTAGGCATACGGAGTTCATTCCCAGT
Found at i:6480983 original size:26 final size:26
Alignment explanation
Indices: 6480943--6480993 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6480933 TGACTTAGGC
*
6480943 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
*
6480969 ATACGAAGTTTATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
6480994 ATTAGATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:6481804 original size:904 final size:902
Alignment explanation
Indices: 6477393--6491841 Score: 11832
Period size: 902 Copynumber: 16.0 Consensus size: 902
6477383 GCTGACTTAG
* * * *
6477393 GCATACGGAGTTCATTCCCTGTCTAAGATC-GAACCGGACCGAGGGTTATGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACAGGACCGAGGGTTACGGCAGCACATGCTGG
* *
6477457 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
6477511 AACCTGACCGGCGACATTGAGCTT-CAAGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGTGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
6477574 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCA
*
6477639 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
6477704 AGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
6477769 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTAAAAAATCCTTCTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAA
* * * ** * *
6477833 AAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCTTGAAAAATTGAAAACGAGTC-T-
452 AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
6477896 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTTTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
6477961 CATTGGCAT-TCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCCATCGATCCACGGGTT
582 CATTGGCATGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
6478025 CCGCATCCCGTCTCTCTGGCCGGCGTA------G--TGCCCGCCCACTCGCTCGTTTCGTCGATT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
6478082 GGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCGGACC-AGACTGAGGGTT---GCAGAAG
711 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAG
* * * * * *
6478143 GATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCAGG-TTGCTCATCCTGCCTCTCTGGCCG
775 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * * *
6478207 ACGGAGCACTCGCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGTTCATTCCCAGTCTAG
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
6478271 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGGATATGCTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
6478336 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-C-AGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
6478399 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
6478463 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCA
* * *
6478528 CACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
6478593 TGCGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTC
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-
* * * * *
6478658 T-TGCATGCCAACAAAAATACAACGATCACCTCCACCAATTTTGGGACCAAAACTCCTTCC-AAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
6478721 AAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACGAGTCGT
452 AAAATTT-AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
6478786 CTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGTGATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
6478851 GCATTCCCATGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTACCAATCCACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
6478916 GTGCATCCCGTCTCTCTGGCCGGCGTA------G--TG--C-CCC-CCTGCTCGTTTGGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
6478969 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGG
711 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGG
* * * * ** * * * *
6479034 ATCAATAGCACACAGAGGGCGACCCGGTCGATCCCCGACTTGCGTATCCTGCCCATCTGGCCGGC
776 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
6479099 TGAGCACCCGCACACTCGTTTCATTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
6479161 GCATACGGGGTTCATTCCCAGTCAAAGATC-GAACCA-GACCGAGGGTTGCGGTAGCACACGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CAGGACCGAGGGTTACGGCAGCACATGCTG
* * *
6479224 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGG-
** *
6479288 AGAACCTGACCGGTGGCATTGGGGTTTTGACGATCGAGGGGGCCGGCGAGGGTTGTGCGCACATG
128 AGAACCTGACCGGTGGCATTGGGGTTCCGACGATCG-GGGGGCCGG-G-GGGGTGTGCGCACATG
** * * *
6479353 ATGTGCGATGGGTGCTGGTACTCAGCCCTTATGTTGGCCCCCTATCTCTCATCAAACCTTGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAA
6479418 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
6479483 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
6479548 TTTCT-TGCATTCCAAAAAAAATAGAAGGATTACGTCTACCAAGTTTGGGACCAAAACTCCTTCT
384 TTT-TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * **
6479612 GGAAAAATTTTAAAAAATCCCAAACCGCAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAG
448 GAAAAAAATTTAAAAAATCCCGAACCGTAAAAA-GTTTTGAAAATCATGAAAAATAGAAAACGAG
* * * * *
6479677 TTGGCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACTAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
6479742 AAT-GCAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCAC
577 AATGGC-ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
6479806 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCG-TTCGT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGT
* * * *
6479870 CGGTTGGCTTAGGCATAGGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTA
706 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCA
* * * * * *
6479935 GCAGGATCGACAGCATGCAGTGGGGGACCC-AGTCAATCCCCGGCTTGCGCATCCCACCCCCCTG
771 GCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
6479999 GCCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGCGTTCATTCCCAATC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
6480064 TAA
900 TAA
* * * * *
6480067 GCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
6480132 CTCTGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
6480197 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGAC-GGGGGGTGTGCGCTCATGATGTGC
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
6480261 GATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
*
6480326 CCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
6480391 GGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
6480456 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** *
6480521 ATTTAAAAAATCCTGAACCCCAAAAAGTTTGGAAAATCATGAAAAATA-AAAACGAGTCGTCTTG
455 ATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
6480585 CC-TGAAACTTCACGTGAAGGCTTAAGGGAACATTTTATGAATTTATAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
6480649 TGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCCTACGC
585 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
6480714 ATCCCGTCTCTCTGGTCGGTGTAGTGCCTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
6480779 TAGACATACGGAGTTCATTCCCAGTCTCAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCG
715 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCG
** * * * * *
6480844 ACAGCACATAGAGGGGGACTCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAG
780 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
6480909 CGCCTGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
6480967 GGATACGAAGTTTATTCCCAGTCTAAGATTAGATAGGACCGAGGGTTACGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
6481032 CTCGGGCATGTGCTGGTGCCGCATTTTTCTACCTCGAGGTACCATCATCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
6481097 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGTCGGGGGGGTGTGCGTACATGATATG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * *
6481162 CAATGGGTGCTAGTAATTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCATCAACTCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCAC
** *
6481227 ACTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
6481292 GGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
6481357 TGCTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
6481422 AATTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 AATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
6481487 GCCTTGAAGCTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
6481552 TTGGCATGTAGAAATATAAAAATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCCTACG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * *
6481617 CATCCCGTCTCTCTGGTCGGCGAAAAGCCCGCCTGCCCGTCCGCCCGCTCGTTTCATCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
6481682 TTAGACATATGGAGTTCATTCTCAGTCTCAGATCAGACCGAATTGAGGGTTACGGCAGCAGGATC
714 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATC
* *
6481747 GACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
779 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
6481812 GCGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
6481871 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
6481936 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * *
6482001 ACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGT-TGTGCACACGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
6482064 CAATGGGTGCTGGTAGTTGGCCCTTATATTGGCGCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCAC
* * *
6482129 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCAGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
6482194 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * *
6482258 ATGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTGCTTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
6482322 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGCC
453 AAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
6482387 TTGCCATGAAATTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATG
* *
6482452 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
6482517 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCACGCGC-GCCCGCCCGCCCGCTCGTTTTGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** * *
6482581 TGGCTTAGGCATA-CGAGTTTATTCCCAATCTAAGA-CTAGGTCGGACCGAGGGTTGCGGCAGCA
710 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACTGAGGGTTGCGGCAGCA
* * * * *
6482644 AGATC-AGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCTTCTGGCC
774 GGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
6482708 GGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
6482773 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * **
6482838 CTCAGGCATGTGCTGGTGCTTCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
6482903 ACCTGGCCGATGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGT-TGTGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
6482967 CTATTGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCAC
* * *
6483032 ACCCCCTTAAAGAGCACTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
6483097 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
6483162 TGGATGCAAAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCATCC-AAA
389 TGCATGC--CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
6483226 AAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
452 AAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
6483291 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
6483356 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * ** *
6483421 GCGCATCCTATCTCTCTGGTCGACGTAGTGCATGCGC-GCCTGCCCGCCCGCTCGTTTCGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
6483485 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA-CTAGACCGGACCGAGGGTTGTGGCAGCA
710 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACTGAGGGTTGCGGCAGCA
* * * * *
6483549 AGATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCACATCCCACCCCTCTGGCCG
774 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
6483614 GCTGAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
6483678 GAATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
6483743 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
6483808 ACCTGACCGGTGGCATTGAGGTTCCAACGATC-GGGGGCCCGGGGGGTGTGCGCATATGATGTGC
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
6483872 GATGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACA
* * *
6483937 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
** * * * * * * ** * *****
6484002 ---GAGTCGTCTTAC-CAT-G--A-AACA--TTGT--A--T-GAATTTACAAGC--CATAAAAGT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTT
* * ** ** * **** * * * *
6484050 G-GCATTGGC-ACGTAGAAATATGAGGAT-GTGCCTA--AA----CCCACC-TACCACCTTGTCG
388 GTGCA-TGCCAAC--AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCG
** ** **** * * **** ** **** * ***** * **
6484105 ATCCAAAGCTT-GCGCATCCCG-TCTCTCTAGCCGGCGTAGTG-CCCGCCTGCCCGCTCGTTTCA
449 A-AAAAAATTTAAAAAATCCCGAAC-C-GTA--AAAAGTTTTGAAAATCATGAAAAATAG--AAA
* * * * ** * * * * * *
6484167 TCGA-TTGGCTTAGGCATACGGAGTTCATTCCCTTTCTAA-G-ATCA--GACC---GAACTGAAG
507 ACGAGTCGTCTT-GCCAT---GA-AAC-TTCAC-GT-GAAGGCTTAAGGGACCATTGTA-TGAA-
* * ** * * *** * *** * * ** * * *
6484224 GTTGC-AG-CAGCAAGATCGGC---GGCACGTAG--AGGGGGACCCG-GTCGATCCCCGGCTTGC
562 TTTACAAGCCATAAAAAT-GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC-ACCTAC
* ** * * * * ** * * *
6484281 GCATCC---CGCCCCTCTGGCCATCTGAGCA-CCCGCACGCTCAT-TTCGTGGGT--TG---ACT
625 -CACCCTATCGATCCAC-GG-C-T-TGCGCATCCCG-TCTCTC-TGGCCG-GCGTAGTGCCCGCC
* *** ** * * *** * * * * *
6484336 TAG-GCATACGGAC-TTC-ATTC--C---CAACCTAAGCCTATGAAGTTCATTCCCAATCTAAGA
682 T-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
* * * * * * * ** **
6484393 TCAGACTGGACCGAGGGTTGCGGCAGCA-CAT-G-CTGGGCTCTGGCATGTGCTGGTGCCG--C-
746 TCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGAC--AGCAC--GCA-GAGGGGGACCCGACCG
*** * * * ** ** * * * ** *
6484452 ATTTTC--CTTCGTCGGATTACCTGACCGAC-GG-C-ATTG-GGGTTCCG-ACGATCG-GGCATG
806 ATCCCCGGCTT-G-CGCA-T-CCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTG
* *
6484509 TGTT-AGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTA
866 GGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCT---A--A
* * * ** * ** * ** * * **
6484551 GAATGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
1 GCAT--A-CG-GAGTT-C-ATTCCCAG-TC-TAAG-A-TCAGA-CAGGA-CCGA-GGGT-TACGG
* * * * ** * * * *** * * * **
6484616 CTTGCGCATCCCGCCCCTCTGGC-CG-GCTGAGCGCCTGCA-CGGTCATTTCGCAGGTTG-ATTT
52 C-AGCACATGCTG-GGCTCGGGCATGTGCTG-GTGCC-GCATTTTTC-TTCCTC-GG-GGCA-CC
* * *** * * * *** * * *
6484677 AGGCATACGGAGTTCATTC-CCAGTCTAAGCAT-A-CGGAGTTCATTCCCAG--ACTAAGATCAG
109 A-TCGT-CGGAG--CA-TCGCC-GGAGAA-CCTGACCGGTG-GCATT-GGGGTTCCGACGATC-G
*** * * * * * * * * ***
6484737 ACCAGACC-GAGGGTTGCCGTAGCACATGCTAG-GCACGA-GCATGTGCTGGAGCCACATT-TTT
164 -GGGGGCCGGGGGGGTG-TG-CGCACATGAT-GTG--CGATG--GGTGCT-G-G-TAC-TTGGCC
* * *** * * ** ** ** **
6484798 CTTCA-CTGGGGAACC-AT-CGTCGGAGCATCGCCGGAGAAC-CTGA--CCGGT---G-GCA-TT
217 CTT-ATATTGGCCCCCTATCCCTC--ATCA-AACCTCAGAACTCACACCCCCTTAAAGAGCATTT
* * ** *** * ** * * *
6484852 GGGGTTCCGACGATCGGGAGGGCCGGGAGGGGGTGAGCGCACATGATGTG-C-G--ATGGGTG-C
278 GAGATT-TTAC-A---GGTTTGCTGCCA----GT-AGC-CA-TTAAAGTGTCTGAAATGGG-GAC
** * * *** ** *
6484912 TGGTACTTGGCCCTT-ATATTGG-CCCCCTATCCCTCATCAAACTTCGAGTACTCACACCCCCTT
330 ----ACTT---TTTTCA-AATGGTCACAAAAT--CTTGT-ACACTTCGAGT--T---------TT
* * * ** *
6484975 AAAGAGCATTTGAGATTTTACAGGTT-TGC-TGCCAATAGCCATTA-AA-G----CGTCTGA--A
373 ---TAGC---TGA-ATTTT----TTTGTGCATGCCAACA-AAAATACAAGGATCACGTCT-ACCA
* ** * * ** * * * **** **
6485030 A---TGGGG---ACACTTTTTTCAAATGGCCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGA
425 AGTTTGGGGCCAAAACTCCTTCCGAA-----A-AAAAT-TTAAAAAATCCCGA-ACCGTA--AAA
*** * * * * * * ** *** *
6485088 A-TTTTG-TTTTGCATGCCAACAAAAATACAAGGATTACGTC-TACC---AAGTTTGGGGCTAAA
480 AGTTTTGAAAAT-CATG--AA-AAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACG-T-GA
** * ** ** * ** * ** ** *
6485147 ATTACTTCCAA--AAAAATAT-TAAAAAATCCCGAA-CCACAAAAA--GTTTTGAAAATCGTGAC
538 A-GGCTT--AAGGGACCAT-TGTATGAATTTAC-AAGCCATAAAAATGGCATTG-GCAT-GT-AG
* * * * * ** **
6485206 AAATA-GAAAACGGGTCGTCTTGCCATGAAACTTCACGTGA--AGGCTTAAGGGA-CCATTG-TA
595 AAATATG--AA--GAT-G---TGCC-T-AAAC-CCACCT-ACCA-CCCT-ATCGATCCACGGCT-
** * * * * ***
6485266 TGAATTTACATGCCATAAAAATGGCAT-TGGCAC-ACAGAAATATGAAGATGTGCCTAAACT-CA
645 TG----CGCATCCCGT----CT--C-TCTGGC-CGGC-G-----T----A-GTGCC-CGCCTGC-
** * ** * ** * * * * ** * *
6485328 CCTACCACCCTATCG-ATCAACGGCTTGCGCATCCT-GTCTCTCTGGCCGGCGCAGTGCCC-GCC
685 CCGCCCGCCCGCTCGTTTCGTCGG-TTG-GC-T--TAGGC-ATATGG--AGTTCA-TTCCCAG-T
*** * ** ** * * * * * **
6485390 CGCCCG-TCCG-CTCGTTTCGTGA-ATTTTCTTACGCATACAGAGTTC-ATTC-CCAATCTAAGA
740 C-TAAGATCAGAC-CG-AAC-TGAGGGTTGC---GGCA-GCAG-GATCGA--CAGC-A-CGCAGA
* * **** * * *** ** *
6485450 TCGGATCGGACCAAGGGTTA-CGATAGTAGGATCGACAGCACATAGAGGGGGACACGGTC-GATC
792 --GG--GGGACC---CG--ACCGATCCCCGGCTTG-C-G--CAT----CCCG-C-CCCTCTG--G
* * * * ** ***
6485513 CTCAGCTTGCGCATCCCGC-CCCTC-TGGCCGGCTGAGCGCCCATACGCTCATTTCGTGGGTTGA
836 C-CGGC-TGAGC-GCCCGCACGCTCGT-TTC-G-TG-G-G--TTGA---------C------T--
* * *
6485576 CATAGGGATATGGAGTTCATTCCAAGTCTAA
874 --TAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
6485607 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCA-GACCGAGGGTTACAACAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
6485671 GCTCGGGCATGTGCTGGAGCCACATTTTTCTTCAC-CGGGGCACCATCGTCAGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
6485735 GAACCTAACTGGTGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGGAGGGGGTGAGCGCACATGA
129 GAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGGGTGTGCGCACATGA
* *
6485800 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGTAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAAC
*
6485865 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
6485930 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTCT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-T
* * * *
6485995 TTTT-TGCATGCCAACAAAAATACAAGGATTACGTCAATCAAGTTT-GGGCCAAAAATCCTTCC-
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
6486057 AAAAAAATATTAAAAAATCTCGAACCGTAAAAAG--TT-----T--TG-AAAAT-----ACGGGT
449 AAAAAAAT-TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
*
6486107 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
**
6486172 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
6486237 CTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCT-CCCGCCCGCCCGCTTGTTTCGTC
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCTGCCCGCCCGCCCGCTCGTTTCGTC
* * * * ** * * *
6486301 AGTTGGCTTAGGCATATAGAGTTCATTTGCTA-TCTAAGATTGGACCGGA-TCGATGGTTGTGGC
707 GGTTGGCTTAGGCATATGGAGTTCA-TTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCGGC
* ** ** *
6486364 AGCAGGATC-AGCAGCACGTAGAGTTGGACTGGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
770 AGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
6486428 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
834 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
6486493 GTAG
899 CTAA
**
6486497 GCATACGGAGTTCATTCCTTGTCTAAGATCAGACCA-GACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * **
6486561 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAG
** ** *
6486626 AACCTGACCGACGAAATTGGGGATCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
6486690 GCGATGGGAGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCA
* *
6486755 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
6486819 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
6486884 TTGCGTGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGTGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
6486949 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
6487014 TGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
6487079 ATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
583 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
6487144 GCATCCCGTCTCTATGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGCTCGTTTCATTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
6487209 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTAAGGGTTGCGGCAGC
709 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGCAGC
* ** * * *
6487273 AAGATCGGTAGCACGCAGAAGGGGG-CCCAACCGATCCTCGGGTTGCGCATCCCG-CCCTCTGGC
773 AGGATCGACAGCACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
6487336 CGTCTGAGCGCCCGCAAGCTC-ATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
6487400 A
902 A
*
6487401 G-AT-C-G-G---------A--C-----T-----A-GACCGAGGGTTACTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
6487440 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGC-CAGGGCACCATCATTGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
6487504 AACCTGACCTGTGGCATTGGGGTTCC-AGCGATCGGGGGAGTC-GGGGGGTGTTCGCA-ATTGAT
130 AACCTGACCGGTGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGGGGGGGTGTGCGCACA-TGAT
** * * *
6487566 GCACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACT
*
6487631 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
6487695 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
6487760 TTATGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
6487824 AAAAATTTTAAAAAATCCCAAAGCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
* *
6487889 TCTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
6487954 GGCATTGGCACGTAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACT
580 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
6488019 TGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCACCCGCCCGCTCGTTTCGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCTGCCCGCCCGCCCGCTCGTTTCGT
* * *
6488084 TGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGC
706 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGC
* ** * * *
6488148 AGCAAGATCGGTAGCACGCAGAAGGGGG-CCCGATCGATCCTCGGGTTGCGCATCCCG-CCCTCT
770 AGCAGGATCGACAGCACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * *
6488211 GGCCGTCTGAGCGCCCGTAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCGGT
834 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
6488276 CTAA
899 CTAA
* * * *
6488280 GCATAC-GAGTCCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
6488343 CCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATCGCCGGA
* *
6488407 GAACCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGAT
6488472 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACT
* *
6488537 CAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-
*
6488602 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
6488667 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCGTGTTTGGGGCCAAAACGCCTT-CAA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
6488731 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAATGAGTC
450 AAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* ** *
6488796 GTGTTTTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
***
6488861 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
6488926 TTGCGCATCCTGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCATTTCATCGA
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
6488987 TTGGCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACAGAAGGTTGCAGCAACA
709 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCA
* * * * * * * * *
6489052 GGATAGGCAGCACGTAAAGGCGGACCCGGCCGATCCTCAGCTTACGCATCCCGCCCCTCTGGCCG
774 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
6489117 ACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
6489181 G-AT-C-G-G---------A-TC--AGAT----------CGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
6489220 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCATCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
6489285 ACCTGACCGGTGGCATTAGGGTTCCGATGGTCAGGGGGCTGGGAGGGGTGTGCACACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATGTG
* * *
6489350 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCAC
6489415 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
6489480 -GGGATCACTTTTTTCGAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTT
324 GGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * ** *
6489544 GTGCATGCTGACAAAAATA-AATG-T-A--TC-ACCAAGTTTTGGGTGAAAAATCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
6489603 AATTTTAAAAAATCCCAAAACGTAAAAAGTTTTGAAAATCATGAAAAATAGCAAACGAGTCGTCT
453 AAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
6489668 TGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA
518 TGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
6489733 CATTGGCATGCAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTT-
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
6489797 CGCATCCTGTCTCTCTGGCCGGAGTAGCGCCCGCCCACTCGCCCGTCCGCCCACCTTCTCGTTCC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CT-GCCCG-CC-CGC-CC-GCTCGTTTC
* * ** * * *
6489862 ATCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGA-TCGAGGGTTACG
704 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCG
** * * *
6489926 GCAGCAGGATCGGTAGCATGCAGAGGTGGACCCGACCGATCCCCGGCTTCCGCATCCCGCCCCTC
768 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
6489991 TGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAG
833 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
6490056 TCTAA
898 TCTAA
* * *
6490061 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGG-CCGAGGGTTGCTGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
6490125 GCTCGGGCATGTGCTAGTGCTGCATTTTTCTTTGC-CGAGGCCCCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCCTCGGGGCACCATCGTCGGAGCATCGCCGGA
** *
6490189 GAACCTGACCGGCAGCATTGGGGTTCCGGCGATC-----G--GGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * **
6490247 GTGATGGGTGCTAGTTTCTTGGCCCTTATATTGGCCTGCTATCCCTCATCAAACCTC-GTAAACT
194 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAG--AACT
6490311 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
6490376 AATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGATTTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
6490441 TTGTGCATGCCAAGAAAAATACAAGGATCACGTCTGCCAAGTTTGGGCCCAAAACTCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * * * *
6490506 GAAATTTTAAAAAATCCCAAACCGCAAAAAATTTTGAAAATCCTAAAAAATAGAAAACGAGTCTT
451 AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
6490571 CTTGCCATGAAAATTCACGTGAAGGCTTAAGGGCCCATTGTATGAGTTGACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
6490636 TAATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** *
6490701 GCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCTGTGCGCCCGCCCGCCCGCTTGCTCTGTC
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCG-TT--TC-GTC
* * * * **
6490766 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACC-AGACTAAGGTTTACGATA
707 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCA
* * * ** * *
6490830 GCAGGATTGACAGCATGCAGAGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCCACCCCTCTGG
771 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * **
6490895 CCGACTGAGCGCCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCT
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
6490960 AA
901 AA
*
6490962 GCATACGGAG----TT--C-G-C---GA-CAG-C---A-C-A----T------G--C-T-C--GA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * * * **
6490993 CTCTAGCAGGTGCTGGTGCTGCGTTTTTC-TCCGTTGGGGCACCATCGCCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCC-TCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
6491057 AACCTGATCGGTGGCATTGGGGTTCCCACGATCGGGCGTGTCGGGGGGG-GTGTGCACGGATGAT
130 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCAC--ATGAT
6491121 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACT
*
6491186 CCCACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTT-CTGCCAGTAGCCATTAAAAGGTGTC
256 CACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATT-AAA-GTGTC
* *
6491250 TAAAATGGGGACACTTTTTTCAAATGGTCACATAAAATCTTGTACACTTCGACGTTTTTCGCTGA
318 TGAAATGGGGACACTTTTTTCAAATGGTCAC--AAAATCTTGTACACTTCGA-GTTTTTAGCTGA
* * * * *
6491315 ATTTTTTTGTGCAAGTTCCAAAAAAAGATTGCAAGCATCACGTCTACTCAAGTTTTGGGGCCACA
380 ATTTTTTTGTGC-A-TGCCAACAAAA-A-TACAAGGATCACGTCTAC-CAAG-TTTGGGGCCAAA
* * * ** *
6491380 ACTTCATTCCGAAAAAAATTTTAAAAGATCCTG-ACCGTAAAAGAGTTTCCAAAAATTCGGTGAA
439 AC-TCCTTCCGAAAAAAA-TTTAAAAAATCCCGAACCGTAAAA-AGTTT-TGAAAA-TC-ATG-A
* *
6491444 AAAATAGAAAATGAGTCATCTTG-CATGAAACTTTCACCGCTGAAGGCTTAAGGGACCATTGTAT
497 AAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCA-CG-TGAAGGCTTAAGGGACCATTGTAT
* *
6491508 GAATTATACAAGTCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
559 GAATT-TACAAG-CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* *
6491573 TACCACCCTATCGA-CCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCG-CT----
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCC
* * * *
6491632 -------CGCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTACTAGTCTAAGAT-TGAA
687 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * * * * * *
6491689 CTGAAATAAGGGTTGCGACAGCAGGATTTG-TAGCACACAGAGGGGGACCCGACCGATCCTCGGC
751 CCGAACTGAGGGTTGCGGCAGCAGGA-TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
6491753 TTGCGTATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
815 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
6491818 TACGGAGTTCATTCCTAGTCTAA
880 TACGGAGTTCATTCCCAGTCTAA
6491841 G
1 G
6491842 ATCAGACCGG
Statistics
Matches: 11043, Mismatches: 1831, Indels: 1393
0.77 0.13 0.10
Matches are distributed among these distances:
865 2 0.00
867 78 0.01
868 136 0.01
869 136 0.01
870 9 0.00
871 13 0.00
872 57 0.01
873 24 0.00
874 93 0.01
875 240 0.02
876 150 0.01
877 61 0.01
878 836 0.08
879 245 0.02
880 226 0.02
881 22 0.00
882 26 0.00
883 41 0.00
884 33 0.00
885 31 0.00
886 178 0.02
887 214 0.02
888 100 0.01
889 337 0.03
890 392 0.04
891 217 0.02
892 31 0.00
893 11 0.00
894 309 0.03
895 238 0.02
896 77 0.01
897 29 0.00
898 47 0.00
899 355 0.03
900 458 0.04
901 298 0.03
902 1419 0.13
903 393 0.04
904 1040 0.09
905 649 0.06
906 607 0.05
907 86 0.01
908 321 0.03
909 8 0.00
911 3 0.00
912 1 0.00
913 2 0.00
914 8 0.00
915 10 0.00
916 4 0.00
917 1 0.00
918 4 0.00
919 2 0.00
920 1 0.00
922 2 0.00
924 3 0.00
925 1 0.00
926 1 0.00
927 2 0.00
928 11 0.00
929 2 0.00
930 1 0.00
932 4 0.00
934 1 0.00
936 4 0.00
937 2 0.00
938 5 0.00
939 4 0.00
940 3 0.00
941 4 0.00
942 7 0.00
943 6 0.00
944 12 0.00
945 10 0.00
947 10 0.00
948 12 0.00
949 21 0.00
950 17 0.00
951 19 0.00
952 16 0.00
953 2 0.00
954 1 0.00
955 1 0.00
956 1 0.00
957 1 0.00
959 1 0.00
962 3 0.00
963 11 0.00
964 1 0.00
965 5 0.00
966 2 0.00
967 4 0.00
968 3 0.00
969 6 0.00
972 5 0.00
973 14 0.00
974 8 0.00
975 1 0.00
976 4 0.00
978 1 0.00
979 1 0.00
980 2 0.00
982 4 0.00
983 12 0.00
984 28 0.00
985 5 0.00
986 5 0.00
987 5 0.00
989 8 0.00
990 5 0.00
992 1 0.00
993 2 0.00
996 1 0.00
997 1 0.00
998 8 0.00
999 10 0.00
1000 8 0.00
1001 5 0.00
1002 9 0.00
1003 22 0.00
1004 14 0.00
1005 6 0.00
1007 6 0.00
1008 5 0.00
1009 3 0.00
1010 9 0.00
1011 1 0.00
1012 1 0.00
1013 4 0.00
1016 1 0.00
1017 1 0.00
1019 11 0.00
1020 6 0.00
1021 8 0.00
1022 7 0.00
1023 1 0.00
1024 639 0.06
1025 564 0.05
1026 426 0.04
1027 440 0.04
1028 501 0.05
1029 496 0.04
1030 514 0.05
1031 607 0.05
1032 563 0.05
1033 668 0.06
1034 447 0.04
1035 414 0.04
1036 1009 0.09
1037 376 0.03
1038 376 0.03
1039 427 0.04
1040 395 0.04
1041 418 0.04
1042 452 0.04
1043 427 0.04
1044 479 0.04
1045 603 0.05
1046 790 0.07
1047 328 0.03
1048 237 0.02
1049 157 0.01
1050 171 0.02
1051 182 0.02
1052 177 0.02
1053 478 0.04
1054 295 0.03
1055 182 0.02
1056 281 0.03
1057 469 0.04
1058 317 0.03
1059 426 0.04
1060 286 0.03
1061 262 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAA
TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:6481875 original size:26 final size:26
Alignment explanation
Indices: 6481845--6481897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6481835 GTTGACTTAG
*
6481845 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
6481871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6481897 G
1 G
6481898 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6482783 original size:26 final size:26
Alignment explanation
Indices: 6482747--6482799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6482737 GTTGACATAG
*
6482747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
6482773 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
6482799 G
1 G
6482800 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:6484708 original size:26 final size:26
Alignment explanation
Indices: 6484679--6484731 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6484669 GTTGATTTAG
*
6484679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
6484705 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
6484731 G
1 G
6484732 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:6487551 original size:878 final size:878
Alignment explanation
Indices: 6484705--6491870 Score: 7855
Period size: 878 Copynumber: 8.1 Consensus size: 878
6484695 CCCAGTCTAA
* * * * * * *
6484705 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCCGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCACATGCTGGG
* * * * * *
6484770 CACGAGCATGTGCTGGAGCCACATTTTTCTTCACTGGGGAACCATCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
6484835 ACCTGACCGGTGGCATTGGGGTTCC-GACGATCGGGAGGGCCGGGAGGGGGTGAGCGCACATGAT
131 ACCTGACCGGTGGCATTGGGGTTCCAG-CGATCGGG-GGGTC--G-GGGGGTGTGCGCACATGAT
* * *
6484899 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGTACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACC
* *
6484964 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGCGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
6485029 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTG
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-
* * * * *
6485094 TTT-TGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCTAAAATTACTTCCAA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** * * *
6485158 AAAAATATTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGACAAATAGAAAACGGGTCG
450 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
*
6485223 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
6485288 GGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCAACGGC
580 GGCATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
6485352 TTGCGCATCCTGTCTCTCTGGCCGGCGCAGTGCCCG--C-CC-GCCCG---TC-CGCTCGTTTCG
644 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGCTCGTTTCA
* ** * ** * * * * * *
6485409 T-GAATTTTCTTACGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGTTACGA
709 TCG-GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTAAGGGTTGCGG
* * ** ** * ** *
6485473 TAGTAGGATCGACAGCACATAGAGGGGGACACGGTCGATCCTCAGCTTGCGCATCCCGCCCCTCT
773 CAGCAGGATCGGTAGCACGCAGAGGGGG-CCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCT
* **
6485538 GGCCGGCTGAGCGCCCATACGCTCATTTCGTGGGTTGACATAGGGATATGGAGTTCATTCCAAG
837 GGCCGACTGAGCGCCCGCACGCTCA-TTC-------G---T-GGG-T-T-GA---C-TT---AG
* * * * * ** *
6485602 TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTACAACAGCAAATG
1 -----GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCACATG
* * * * * * *
6485667 CTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGCC
61 CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTC
* * * * * *
6485732 GGAGAACCTAACTGGTGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGGAGGGGGTGAGCGCACA
126 GGAGAACCTGACCGGTGGCATTGGGGTTCCAGCGATC-GGGGGGTC--G-GGGGGTGTGCGCACA
*
6485797 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAG
187 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
6485862 TACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
252 AACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
6485927 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAAT
317 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
6485992 TCTTTTT-TGCATGCCAACAAAAATACAAGGATTACGTCAATCAAGTTT-GGGCCAAAAATCCTT
382 T-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
6486055 CCAAAAAAATATTAAAAAATCTCGAACCGTAAAAAG--TT-----T--TG-AAAAT-----ACGG
446 CCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
*
6486105 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
6486170 AAATGGCATTGGC-A-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
576 AAATGGCATTGGCAAGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * * *
6486233 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTG-CC-CAC-CCT-CCCGCCCGCCCGCTTG
639 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGCTCG
* * * * * * * * *
6486294 TTTCGTCAGTTGGCTTAGGCATATAGAGTTCATTTGCTA-TCTAAGATTGGACCGGA-TCGATGG
704 TTTCATCGGTTGGCTTAGGCATATGGAGTTCA-TTCCCAGTCTAAGATCGAACCGGACT-AAGGG
* * * * * * ** * *
6486357 TTGTGGCAGCAGGATCAGCAGCACGTAGAGTTGGACTGGGCCGATCCCCGGCTTGCGCATCCCGC
767 TTGCGGCAGCAGGATCGGTAGCACGCAGAG-GGGGCCCGACCGATCCTCGGCTTGCGCATCCCGC
*
6486422 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
831 CCCTCTGGCCGACTGAGCGCCCGCACGCTC-ATTCGTGGGTTGACTTAG
*
6486471 GCATACGGAGTTCATTCCTAGTGTAGGCATACGGAGTTCATTCCTTGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCTA--GT---C-TA---AG---A-------TC---G----GACTAGAC
* * * **
6486536 CGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGG
40 CGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGG
* * ** ** *
6486601 CACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGAAATTGGGGATCC-GACGATCGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCAG-CGATC-GGGGG
* * *
6486665 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTTGCCCTTATATTGGCCCCCTA
168 GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
6486730 TCCCTCATCAAACCTTGAGAACCCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTG
233 TCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
6486794 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
6486859 TTTGAGTTTTTAGCTAAATTTTTTTTTGCGTGCCAAAAAAAATACAAGGATCACGTTTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
6486924 TTGGTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATC
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATC
* *
6486989 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTA
493 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
6487054 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * *
6487119 ACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTATGGCCGACGTAGTGCCCGCCCGCCTG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTG
*
6487184 CCCGCCCGCTCGCTCGTTTCATTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCG
688 CCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCG
* * *
6487249 AACTGGACTAAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAAGGGGGCCCAACCGATCCTCGG
753 AACCGGACTAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG-AGGGGGCCCGACCGATCCTCGG
* * *
6487314 GTTGCGCATCCCG-CCCTCTGGCCGTCTGAGCGCCCGCAAGCTCATTCGTGGGTTGACTTAG
817 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTCGTGGGTTGACTTAG
* *
6487375 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCACATGCTGGG
* * ** * * *
6487440 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGCCAGGGCACCATCATTGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * **
6487505 ACCTGACCTGTGGCATTGGGGTTCCAGCGATCGGGGGAGTCGGGGGGTGTTCGCA-ATTGATGCA
131 ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGG-GTCGGGGGGTGTGCGCACA-TGATGTG
* *
6487569 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
*
6487634 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
6487698 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
6487763 TGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
389 TGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
6487827 AATTTTAAAAAATCCCAAAGCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
6487892 TGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
6487957 ATTGGCACGTAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
583 ATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
6488022 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCACCCGCCCGCTCGTTTCGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGCTCGTTTCATCGG
* *
6488087 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCGGCAGCA
713 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTAAGGGTTGCGGCAGCA
* * *
6488152 AGATCGGTAGCACGCAGAAGGGGGCCCGATCGATCCTCGGGTTGCGCATCCCG-CCCTCTGGCCG
778 GGATCGGTAGCACGCAG-AGGGGGCCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
6488216 TCTGAGCGCCCGTAAGCTCATTTCATGGGTTGACTTAG
842 ACTGAGCGCCCGCACGCTCA-TTCGTGGGTTGACTTAG
*
6488254 GCATACAGAGTTCATTCCCGGTCTAAGCATACGAGTCCATTCCCAGTCTAAGATCGGACCAGACC
1 GCATAC-G-G---A------GT-T---CAT-----TCC--T---AGTCTAAGATCGGACTAGACC
* * * *
6488319 GAGGGTTGC-GACAGCACATGCTGGCCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACTGGGG
41 GAGGGTTGCTG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGG
* *
6488383 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCAGCGATC-GGGGGG
*
6488448 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 TC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
6488513 ATCCCTCATCAAACCTCGAGAACTCAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
6488578 GCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
297 GCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * **
6488643 ACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCGT
361 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* ** * *
6488708 GTTTGGGGCCAAAACGCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAA
* * **
6488773 TCATGAAAAATAGAAAATGAGTCGTGTTTTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
6488838 TATGAATTTAAAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCA
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCCA
*
6488902 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCG--C-C
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * *
6488964 C-GCCCG--C-C-CGCTCATTTCATCGATTGGCCTAGGCATACGGAGTTCATTCCTAGTCTAAGA
685 CTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
** * * * * * * * * *
6489024 TC-AGACCAAAC-AGAAGGTTGCAGCAACAGGATAGGCAGCACGTAAAGGCGGACCCGGCCGATC
750 TCGA-ACCGGACTA-AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGG-GGGCCCGACCGATC
* * * *
6489087 CTCAGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACT
812 CTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC-ATTCGTGGGTTGACT
6489152 TAG
876 TAG
* *
6489155 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCGAGGGTTG-TGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACT-AGACCGAGGGTTGCT-GCAGCACATGCTG
* * * * *
6489218 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCATCGGAGCATTGTCGGA
64 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
6489283 GAACCTGACCGGTGGCATTAGGGTTCCGATG-G-TCAGGGGGCTGGGAGGGGTGTGCACACATGA
129 GAACCTGACCGGTGGCATTGGGGTTCC-A-GCGATC-GGGGGGTCGG-GGGGTGTGCGCACATGA
* * *
6489346 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
6489411 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 CCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
6489476 AAAT-GGGATCACTTTTTTCGAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTT
320 AAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * * ** *
6489540 TTTTGTGCATGCTGACAAAAATA-AATG-T-A--TC-ACCAAGTTTTGGGTGAAAAATCCTTCCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
6489599 AAAAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTTGAAAATCATGAAAAATAGCAAACGAGTC
449 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
*
6489664 GTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 GTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
6489729 ATGACATTGGCATGCAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGG
578 ATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
6489794 CTT-CGCATCCTGTCTCTCTGGCCGGA-GTAGCGCCCGCCC-ACTCGCCCGTCCGCCCACCTTCT
643 CTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCT-GCCCG-CC-CGC-TC-GCT
* * ** * *
6489856 CGTTCCATCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TAGACCGGA-TCGAG
702 CGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACT-AAG
* * * * *
6489919 GGTTACGGCAGCAGGATCGGTAGCATGCAGAGGTGGACCCGACCGATCCCCGGCTTCCGCATCCC
765 GGTTGCGGCAGCAGGATCGGTAGCACGCAGAGG-GGGCCCGACCGATCCTCGGCTTGCGCATCCC
* * *
6489984 GCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
829 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTC-ATTCGTGGGTTGACTTAG
*
6490035 GCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGC
1 GCATACGGAGTTCATTCCTAGTCTAAG-AT-C-G-G---------A--CT---A---G---A--C
* * * * * *
6490100 CGAGGGTTGCTGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTTGCCGAGG
40 CGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGG
* * ** *
6490165 CCCCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATC----GG-
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGT
* * * **
6490225 -GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTTTCTTGGCCCTTATATTGGCCTGCTAT
170 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTAT
*
6490289 CCCTCATCAAACCTCGTA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 CCCTCATCAAACCTCG-AGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
6490353 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
6490418 TTCGAGTTTTTTGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTGCCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
6490483 TTGGGCCCAAAACTCCTTTCGAAGAAATTTTAAAAAATCCCAAACCGCAAAAAATTTTGAAAATC
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATC
* * * * *
6490548 CTAAAAAATAGAAAACGAGTCTTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGCCCATTGTA
493 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * ** * * *
6490613 TGAGTTGACAAGCCATAAAAATGTAATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * * *
6490678 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCTGTGC-
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCT
* * * *
6490742 GCCCGCCCGCCCGCTTG-CTCTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
687 GCCCGCCCGCTCGCTCGTTTC-ATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * ** * *
6490806 CAAACCAGACTAAGGTTTACGATAGCAGGATTGACAGCATGCAGAGGGGGACCCGGCCGATCC-C
751 CGAACCGGACTAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGG-CCCGACCGATCCTC
* * * * *
6490870 TAGCTTGTGCATCCCACCCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTCCGTGGGTTGACTTA
815 -GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATT-CGTGGGTTGACTTA
6490935 G
878 G
* * *
6490936 GCATACGGAGTTCATTCATAGTCTAAG--C--A-T--A-CG-GAGTTCGC-GACAGCACATGCTC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTT-GCTG-CAGCACATGCTG
* * * * * * * * *
6490991 GACTCTAGCAGGTGCTGGTGCTGCGTTTTTCTCCGTTGGGGCACCATCGCCGGAGCATCATCGGA
64 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
6491056 GAACCTGATCGGTGGCATTGGGGTTCCCA-CGATCGGGCGTGTCGGGGGGGGTGTGCACGGATGA
129 GAACCTGACCGGTGGCATTGGGGTT-CCAGCGATCGGG-GGGTCGGGGGGTGTGCGCAC--ATGA
6491120 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
6491185 TCC-CACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTT-CTGCCAGTAGCCATTAAAAGGTG
255 -CCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATT-AAA-GTG
* *
6491248 TCTAAAATGGGGACACTTTTTTCAAATGGTCACATAAAATCTTGTACACTTCGACGTTTTTCGCT
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCAC--AAAATCTTGTACACTTCGA-GTTTTTAGCT
* * * *
6491313 GAATTTTTTTGTGCAAGTTCCAAAAAAAGATTGCAAGCATCACGTCTACTCAAGTTTTGGGGCCA
378 GAATTTTTTTGTGC-A-TGCCAACAAAA-A-TACAAGGATCACGTCTAC-CAAG-TTTGGGGCCA
* * * ** ** *
6491378 CAACTTCATTCCGAAAAAAATTTTAAAAGAT-CCTGACCGTAAAAGAGTTTCCAAAAATTCGGTG
437 AAAC-TCCTTCCG-AAAAAATTTTAAAAAATCCCAAACCGTAAAA-AGTTT-TGAAAA-TC-ATG
* *
6491442 AAAAAATAGAAAATGAGTCATCTTG-CATGAAACTTTCACCGCTGAAGGCTTAAGGGACCATTGT
496 -AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCA-CG-TGAAGGCTTAAGGGACCATTGT
* * *
6491506 ATGAATTATACAAGTCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
557 ATGAATT-TACAAG-CCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
*
6491571 CCTACCACCCTATCGA-CCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA----------G-
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * *
6491624 -T----GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTACTAGTCTAAGA
685 CTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
* * * * * ** *
6491684 TTGAACTGAAATAAGGGTTGCGACAGCAGGATTTGTAGCACACAGAGGGGGACCCGACCGATCCT
750 TCGAACCGGACTAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGG-CCCGACCGATCCT
* * * *
6491749 CGGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTA
814 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCA-TTCGTGGGTTGACTTA
6491814 G
878 G
* ** *
6491815 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCA
6491871 GGATCGGTAG
Statistics
Matches: 5434, Mismatches: 591, Indels: 493
0.83 0.09 0.08
Matches are distributed among these distances:
864 19 0.00
866 6 0.00
867 92 0.02
868 116 0.02
869 122 0.02
870 5 0.00
871 1 0.00
872 9 0.00
873 10 0.00
874 91 0.02
875 224 0.04
876 166 0.03
877 46 0.01
878 761 0.14
879 224 0.04
880 205 0.04
881 9 0.00
882 11 0.00
883 6 0.00
884 21 0.00
885 14 0.00
886 330 0.06
887 150 0.03
888 25 0.00
889 9 0.00
890 248 0.05
891 19 0.00
892 29 0.01
893 3 0.00
894 32 0.01
895 40 0.01
896 65 0.01
897 6 0.00
898 34 0.01
899 192 0.04
900 116 0.02
901 263 0.05
902 567 0.10
903 13 0.00
904 289 0.05
905 164 0.03
906 289 0.05
907 63 0.01
908 328 0.06
909 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGCTCGTTTCATCGGTTG
GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTAAGGGTTGCGGCAGCAGGA
TCGGTAGCACGCAGAGGGGGCCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
AGCGCCCGCACGCTCATTCGTGGGTTGACTTAG
Found at i:6488294 original size:25 final size:26
Alignment explanation
Indices: 6488254--6488305 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
6488244 GTTGACTTAG
* *
6488254 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
6488280 GCATAC-GAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
6488305 G
1 G
6488306 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:6490071 original size:26 final size:26
Alignment explanation
Indices: 6490035--6490087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6490025 GTTGACTTAG
*
6490035 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6490061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6490087 G
1 G
6490088 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6491881 original size:159 final size:159
Alignment explanation
Indices: 6491590--6492001 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 159
6491580 CTATCGACCA
* * * ** * *
6491590 CGGCTTGCGCATCCCGTCTCTCTGGTCGAC-GTAGTGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
1 CGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG-AGAACCCGCACGCTCGTTTCGTCGGTTGACTT
* * * * * **
6491654 AGGCATAAGGAGTTCATTACTAGTCTAAGATTGAACTGAAATAAGGGTTGCGACAGCAGGATTTG
65 AGGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGAAACAAGGGTTGCGACAGCAGGATCGG
* *
6491719 TAGCACACAGAGGGGGACCCGACCGATCCT
130 TAGCACACAGAGGGGGAACCGACCGATCCC
* * * *
6491749 CGGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGAACCCGCACGCTCGTTTCGTCGGTTGACTTA
* * * *
6491814 GGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGG
66 GGCATACGGAGTTCATTCCTAGTCTAAGAT-AGAACCGAAACAAGGGTTGCGACAGCAGGATCGG
** * * ** *
6491878 TAGCATGCAGATGGGGAATCGGTCGTTCCC
130 TAGCACACAGAGGGGGAACCGACCGATCCC
* * * * *
6491908 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGAAACCCGCATGCTCGTTTCATCGGTTGATTT
1 CGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG-AACCCGCACGCTCGTTTCGTCGGTTGACTT
*
6491973 AGGCATACGGAGTTCATTCCCAGTCTAAG
65 AGGCATACGGAGTTCATTCCTAGTCTAAG
6492002 CATATGGAGT
Statistics
Matches: 210, Mismatches: 40, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
159 156 0.74
160 54 0.26
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
CGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGAACCCGCACGCTCGTTTCGTCGGTTGACTTA
GGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGAAACAAGGGTTGCGACAGCAGGATCGGT
AGCACACAGAGGGGGAACCGACCGATCCC
Found at i:6492005 original size:26 final size:25
Alignment explanation
Indices: 6491975--6492026 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
6491965 GTTGATTTAG
6491975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
*
6492001 GCATATGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
6492026 G
1 G
6492027 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:6493405 original size:718 final size:712
Alignment explanation
Indices: 6492001--6493479 Score: 2119
Period size: 718 Copynumber: 2.1 Consensus size: 712
6491991 CCCAGTCTAA
* * * * * *
6492001 GCATATGGAGTTCATTCCCAGT-TAAGATCGGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCAGCAGCAAATGCTGGG
6492065 CTCGGCCAAGTGCTGGTGCCGCATTTTTCCTCGCCCGGGCACCATCGTCAGAGCATCACCGGAGA
65 CTCGGCCAAGTGCTGGTGCCGCATTTTTCCTCGCCCGGGCACCATCGTCAGAGCATCACCGGAGA
* *
6492130 ACTTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGGTCTGC
130 ACCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGATCTGC
** *
6492195 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTCAAA
*
6492260 CCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
6492325 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGT
325 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCTTGT
** * * ** *
6492390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAATA
390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGAATGAGACCAAAACGCCTTCCGAAAAAA
* ** * *
6492455 TTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
* *
6492520 CCATGAAACTTCACGTGAAGGCTTACGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAATGGCAT
*** *
6492585 TGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGC
585 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * * *
6492650 ATTCCGTCTCTCTGGCCGACGTAGTGCCCGTCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTT
650 ATCCCGTCTCTCTGGCCGACGTAGTG-CC--CG-CCGCCCGCCCGCTAATTTCATCGGTTGGCTT
6492715 AG
711 AG
* * *
6492717 GCATAAGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCGGCAAATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCAGCAGCAAATGCTGGG
* * * ** * *
6492782 CTTGGGCATGTGCTGGTGCCGCATTTTTTTTCG-TCGAGGCACCATCGT-TGTAGCATCACCGGA
65 CTCGGCCAAGTGCTGGTGCCGCATTTTTCCTCGCCCG-GGCACCATCGTCAG-AGCATCACCGGA
* * *
6492845 GAACCTGACCGGCTGCATTGTGGTTCCGGTC-ATCGGGGGGGCCG-GGGGGGTGTGCGCACATGA
128 GAACCTGACCGGCGGCATTGGGGTTACGG-CGATC-GGGGGG-CGAGGGGGGTGTGCGCACATGA
* *
6492908 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCAAGAGAAC
190 TCTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAAC
** *
6492973 TCAAATGCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 TCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
6493038 AAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTC
320 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTC
* * * *
6493103 CTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGAATGATACCAGAACGCCTTCCGA
385 CTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGAATGAGACCAAAACGCCTTCCGA
* *
6493168 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* * *
6493233 TCTTGCCATGAAACTTCATGTGAAGGC-TAATGGACCATTGTATGAATTTACAAGCCAT-AAAAA
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCAAAAA
* * *
6493296 TGGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACTTACCACCCTATCGATCCAC-GA
579 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-
*
6493360 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTAATTTCATCGGTTG
643 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCGCTAATTTCATCGGTTG
6493425 GCTTAG
707 GCTTAG
* *
6493431 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGC
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGC
6493480 GGTAGCAGGA
Statistics
Matches: 679, Mismatches: 75, Indels: 20
0.88 0.10 0.03
Matches are distributed among these distances:
713 1 0.00
714 76 0.11
716 26 0.04
717 229 0.34
718 345 0.51
719 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCAGCAGCAAATGCTGGGC
TCGGCCAAGTGCTGGTGCCGCATTTTTCCTCGCCCGGGCACCATCGTCAGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGATCTGCA
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTCAAAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGAATGAGACCAAAACGCCTTCCGAAAAAAT
TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAATGGCATT
GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCTAATTTCATCGGTTGGCTTAG
Found at i:6493626 original size:26 final size:26
Alignment explanation
Indices: 6493590--6493642 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6493580 GTTGACTTAG
6493590 GCATACAGAGTTCA-TTCACAGTCTAA
1 GCATACAGAGTTCATTTC-CAGTCTAA
*
6493616 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
6493642 G
1 G
6493643 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:6494116 original size:898 final size:899
Alignment explanation
Indices: 6492717--6495266 Score: 3488
Period size: 898 Copynumber: 2.8 Consensus size: 899
6492707 GTTGGCTTAG
* * * * *
6492717 GCATAAGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC-AGCGGCAAATGCTGG
1 GCATACGGAGTTCATTTCC-ATCTAAGATCAGACTAGACCGAGGGTTGCGA-CAGCACAT-CTGG
* * * * *
6492781 GCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGAGGCACCATCGTTGTAGCATCACCGGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
6492846 AACCTGACCGGCTGCATT-GTGGTTCCGGTC-ATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
128 AACCTGACCGGCGGCATTAG-GGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
* * **
6492909 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCAAGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** *
6492974 CAAATGCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * **
6493039 AATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTCC
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *** * ** *
6493104 TTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGAATGATACCAGAACGCCTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAA
* *
6493169 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGT
* *
6493234 CTTGCCATGAAACTTCATGTGAAGGC-TAATGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
6493298 GCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACTTACCACCCTATCGATCCACGACTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
6493363 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTAATTTCATCGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * *
6493428 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCAAGGGTTGCGGTAGCAGGATT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCAAGGGTTACAGCAGCAGGATT
** ** * *
6493492 GGTAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCTCGTCCCTCTGGCCGGCAGA
775 GACAGCATGCAGA-GGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAGA
* ** * *
6493557 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-ACAGAGTTCATTC-ACAGTCTAA
839 GCGCCCGCACGCTCGCTTCACGGATCGACTTAGGCATAACAGAGTTCATTCTACAGTCTAA
* *
6493616 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACTAGACCGAGGGTTACGACAACACATACTGGG
1 GCATACGGAGTTCATTTCCA-TCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACAT-CTGGG
* **
6493681 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
6493746 ACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGAGCGCACATGATGTGT
129 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
6493811 GATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
6493876 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
6493941 GGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6494006 GCATGCCAAAAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
* * * *
6494071 TTTGAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTG
454 TTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
* * *
6494136 CCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAAAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
6494201 TGAG-ACACAGAAATATGATGACGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
584 TG-GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
6494265 CAT-CCGTCTCTCTGGGCGGCGTAGTGCCCGGCCGCCCGCCCACCTGCTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC-GCTCATTTCGTCGGTTGGC
* * ***
6494329 TTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC-AGATTGAGGGTTACAGCAGCAGGAT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCAAGGGTTACAGCAGCAGGAT
* * * *
6494393 TGACAGCATGTAGAGGGGACCCGGCCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
774 TGACAGCATGCAGAGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAGA
* *
6494458 GCGCCCGCACGCTCGCTTCACGGATCGACTTAGGCATAACGGAGTTCATTCTCCAGTCTAA
839 GCGCCCGCACGCTCGCTTCACGGATCGACTTAGGCATAACAGAGTTCATTCTACAGTCTAA
* * * * *
6494519 GCATAACGGAGTTCA-TTCCATTTGATGAT-AGACTGGAACCGAGGGTTGTGACAGCACATGTGG
1 GCAT-ACGGAGTTCATTTCCATCT-AAGATCAGACTAG-ACCGAGGGTTGCGACAGCACATCTGG
*
6494582 GCTC-GGCATGTGCTGGTGCCTGGCATTTTTCCTCGTCTGGGGCACCATCGTCGGAGCATCACCG
63 GCTCGGGCATGTGCTGGTGCC--GCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCG
* * * * * * * *
6494646 GAG-A-CTGAACCCAGTGGCATTAGTGTTTCGATGATCGGGGGGGCTGGGGGGTGTGCGCATATG
125 GAGAACCTG-A-CCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
* * *
6494709 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-AGTGCCCCCTATCCCTAACCAAACCTCGAGA
188 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGA
*
6494773 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
252 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
6494838 TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
317 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
6494902 TTTTTGTGCATGCCAACAAAACTACAAGGATCACGTGTACCAAGTTTGGGGCCAAAAATCC-CTC
382 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC
** *
6494966 TGAAAAAA-TTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAAT-TCTAAAAAATAGAAAACGA
447 -GAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGA
* * *
6495029 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCT
510 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-A
** * * *
6495093 AAAATTTCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCA
574 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
6495158 CGGCTTGCGTATCCCATCTCTTTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCAG
639 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
6495223 TTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGATCGGACCG
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
6495267 GACTGACGGT
Statistics
Matches: 1458, Mismatches: 165, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
898 385 0.26
899 277 0.19
900 6 0.00
901 98 0.07
902 282 0.19
903 150 0.10
904 260 0.18
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTTCCATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
CTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATT
TAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCAAGGGTTACAGCAGCAGGATTGACAGC
ATGCAGAGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCG
CACGCTCGCTTCACGGATCGACTTAGGCATAACAGAGTTCATTCTACAGTCTAA
Found at i:6497006 original size:26 final size:26
Alignment explanation
Indices: 6496966--6497018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6496956 GTTGACTTAG
6496966 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
6496992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
6497018 G
1 G
6497019 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:6497700 original size:26 final size:26
Alignment explanation
Indices: 6497670--6497748 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
6497660 GTTGACTTAG
*
6497670 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6497696 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6497722 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6497748 G
1 G
6497749 ATCAGACCGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6499663 original size:895 final size:899
Alignment explanation
Indices: 6497922--6499926 Score: 2635
Period size: 895 Copynumber: 2.2 Consensus size: 899
6497912 GTGCGATGGG
* * * *
6497922 TGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACTTTAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * *
6497987 GAATTTACAAAGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGTCTAAACCCACCAA
66 GAATTTAC-AAGCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA-CCACCTA
* * *
6498052 CCACCCTATCGATCCATGGCTTATGCATCCCGTATCTCTGGTCGACATAGTGCCGGCTCGCCCGC
129 CCACCCTATCGATCCATGGCTTACGCATCCCGTATCTCTGGTCGGC---GT---AG-T-GCCCG-
* * **
6498117 CCTCTCGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGG
185 -C-CT-GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
*** * * * * *
6498182 ATTGGATCGAGGGTTGTAGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCAGCCGATCCCTAGC
247 ACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGAGGGACCCAGCCGATCCCGAGC
* ** *
6498247 TTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCTCCACGCTTGTTTCGTGGGTTGACTTAGGCAT
312 TTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCTCCACGCTCATTTCATGGGTTGACTTAGGCAT
** *
6498312 ACGGAGTTCATTCCCAGTCCAAGCATACGAGGTTCATTCCCAATCTAAGATCGGACCGGACCGAG
377 ACAAAGTTCATTCCCAGTCCAAGCATACGAGGTTCATTCCCAATCTAAGATCGGACCAGACCGAG
**
6498377 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACC
442 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGACGCACC
* * * * *
6498442 ATCGTCAGAGCATCGATGGAGAATCTAACAGGCGGCATTGGGGTTTCGACGATCGGGTGGGCCGA
507 ATCGTCAGAGCATCGACGAAGAACCTAACAGGCGGCATTAGGGTTCCGACGATCGGGTGGGCC-A
*
6498507 GGGGGTGAGCACACATGATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCC
571 GGGGGTGAGCACACATCATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCC
** * * * *
6498572 TCATCAAACCTTGAGAACTCACGCCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
636 TCATCAAACCTCAAGAACTCACACCCCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAA
* *
6498637 TAGCCATTAAAGCGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACGCTTCG
701 TAGCAATTAAAGCGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCG
6498702 AGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
766 AGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
** * ** *
6498767 GGCCAAAACTTTTTCC-GAA-A-AA-AT-T-T-TAAAAAATCTCGAACCGCAAAGA-GTTTCAAA
831 GGCCAAAACTCCTTCCAAAATACAAGATATGTCTAAAAAAGATCAAACCGCAAA-ATGTTTCAAA
6498824 AATCA
895 AATCA
* * * * *
6498829 TGAAAAATAGAAAACCAGTCGTCTTGCCACGAAACTTCACGTGAAGGTTTAAGGGACCATTCTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
6498894 GAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCTACCT
66 GAATTTACAAG-CATAAAAATGGCATTGGCACA-CAAAAATATGAAGATGTGCCTAAACC-ACCT
* *
6498958 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTCTCTGGTCGGCGTAGTGCCCGCCTGCCCG
128 ACCACCCTATCGATCCATGGCTTACGCATCCCGTATCTCTGGTCGGCGTAGTGCCCGCCTGCCCG
* *
6499023 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAG
193 CTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAG
* * *
6499088 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGCATCC
258 GGTTGCAGCAGCAGGATCGACAGCACGCAGAGAGGGACCCAGCCGAT-CCCGAGCTTGCGCAT--
* * * *
6499152 CCCCCCCTCTGGTCGGCTGAGCGCC-CGTACGCTCATTTTATGGGTTGACTTGGGCATACAAAGT
320 CCCCCCCTCTGGCCGGCTGAGCGCCTC-CACGCTCATTTCATGGGTTGACTTAGGCATACAAAGT
* * * *
6499216 TCATTCCCAGTCTAAGCATATG-GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGC
384 TCATTCCCAGTCCAAGCATACGAG-GTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGC
* * *
6499280 GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCTCATTTTTCTCTGC-C-GACGCACCATCG
448 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT-T-CACTGACGCACCATCG
* * *
6499343 -CTGGAGCATC-ACCGAAGAACCTGACCA-GCGGCATTAGGGTTCCGATGATCGGG-GTGGCC-G
511 TC-AGAGCATCGA-CGAAGAACCT-AACAGGCGGCATTAGGGTTCCGACGATCGGGTG-GGCCAG
* * * *
6499403 GGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
572 GGGGTGAGCACACATCATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCT
*
6499468 CATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
637 CATCAAACCTCAAGAACTCACACCCCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
* *
6499533 AGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
702 AGCAATTAAAGCGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
6499598 GTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
767 GTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
** *
6499663 GCCAAAACTCCTTCCAAAAATACAAGGATCATGTCTACCAAGGATCAAACCGCAAAATGTTTCAA
832 GCCAAAACTCCTTCC-AAAATACAA-GAT-ATGTCTAAAAAAGATCAAACCGCAAAATGTTTCAA
6499728 AAATCA
894 AAATCA
* * *
6499734 TGAAAATTAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAA
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * *
6499799 GAATTTACAAGACATAAAAATGGCATCGGCACACAAAAATATGAAGATGTGCCAAAACACAGCTA
66 GAATTTACAAG-CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC-CACCTA
* * * * * * *
6499864 CCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTTGTGCCCGCCCGCCC
129 CCACCCTATCGATCCATGGCTTACGCATCCCGTATCTCTGGTCGGCGTAGTGCCCGCCTGCCC
6499927 ACCCACCCGG
Statistics
Matches: 962, Mismatches: 109, Indels: 56
0.85 0.10 0.05
Matches are distributed among these distances:
895 365 0.38
896 11 0.01
897 206 0.21
898 6 0.01
899 8 0.01
900 1 0.00
901 3 0.00
903 1 0.00
904 4 0.00
905 197 0.20
906 8 0.01
907 152 0.16
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (899 bp):
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCACCTACC
ACCCTATCGATCCATGGCTTACGCATCCCGTATCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTC
ATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
TGCAGCAGCAGGATCGACAGCACGCAGAGAGGGACCCAGCCGATCCCGAGCTTGCGCATCCCCCC
CTCTGGCCGGCTGAGCGCCTCCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC
CAGTCCAAGCATACGAGGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGACGCACCATCGTCAGAGCATC
GACGAAGAACCTAACAGGCGGCATTAGGGTTCCGACGATCGGGTGGGCCAGGGGGTGAGCACACA
TCATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
AACTCACACCCCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGCGT
CTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CAAAATACAAGATATGTCTAAAAAAGATCAAACCGCAAAATGTTTCAAAAATCA
Found at i:6500814 original size:26 final size:26
Alignment explanation
Indices: 6500778--6500830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6500768 GTTGACTTAG
*
6500778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
6500804 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
6500830 G
1 G
6500831 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:6501718 original size:26 final size:26
Alignment explanation
Indices: 6501679--6501734 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6501669 TGGGTTGACT
6501679 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
**
6501705 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
6501731 TAAG
1 TAAG
6501735 ATTAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:6502606 original size:26 final size:26
Alignment explanation
Indices: 6502577--6502629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6502567 GTTGAGTTAG
*
6502577 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6502603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6502629 G
1 G
6502630 ATAGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6505453 original size:891 final size:879
Alignment explanation
Indices: 6504330--6507157 Score: 3548
Period size: 866 Copynumber: 3.3 Consensus size: 879
6504320 ATCGCCGAAA
* * * * *
6504330 AACCTGACCGACGACATTGGGGTTTCGGA-GATCGGGGGGGCCAGGGGGTGTGCGCACATGATAT
1 AACCTGACCGGCGGCATTAGGG-TTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
* * *
6504394 GTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCA
65 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
6504459 CACCTCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
6504524 TGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
195 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
6504589 GTGCATGCCAACAAAAATAAAAGGATCACGTCTGCGAAGTTTGGGGCCAAAAACTCCTTCGAAAA
260 -TGCATGCCAACAAAAATAAAA-GATCACGTCTGC-AAGTTTGGGGCC-AAAACTCCTTCGAAAA
*
6504654 AAATTTTGAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
321 AAATTTT-AAAAATCC-GAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
* * *
6504719 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACTATTGTATGAATTTACAAGCCATACAAATGG
383 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
6504784 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTG
448 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
6504849 CGCATCCCGTCTATCTGGCTGGCGTAGTACCCGCCCGTCCGCTTGCCCGCTCGTTTCGTCGGTTG
513 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCC-C--GCCCGCTCGTTTCGTCGGTTG
* *
6504914 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGA
575 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TGAGGGTTGCGGCAGCAGGA
*
6504979 TCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCGTATTGCACATCCCGCCCCTCTGGCCGACT
639 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGTATTGCACATCCCGCCCCTCTGGCCGACT
* * *
6505044 GAGCTCCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGT
704 GAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC-T
*
6505109 ACAGAGTTCATTCCCAGTCTGAGATCGGACCGAGCTGAAGGTTACGATAGCACATGCTGGGCTCA
768 ACAGAGTTCATTCCCAGTCTGAGATCGGACC-AGCTGAGGGTTACGATAGCACATGCTGGGCTC-
* * * ** *
6505174 GGCATGTGCTGGTGTCATATTTTTCTTCATCGGGGAACCATCCCCAGAG
831 GGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * *
6505223 CATC-G-CCGG-AGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGAGGT
1 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGT
* *
6505285 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTA
65 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
6505350 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAGAGTGTCTAAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
6505415 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTT
195 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
6505478 TG--TG----C-----------AT---G---GCAAGTTTGGGGCCAAAATTCCTTCTAAAAAAAA
260 TGCATGCCAACAAAAATAAAAGATCACGTCTGCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAAA
* * *
6505520 TTTAAAAAAT-C---CC----------CAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCA
324 TTTTAAAAATCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
* *
6505571 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGACATAAAAATGGCATTGG
389 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
6505636 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
454 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
6505701 CCGGCTCTCTGGCCAGCGTATTGCCCGCCCGT-CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
519 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
6505765 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAAGGTTGCGGCAGCAGGATCGATAGCA
584 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TGAGGGTTGCGGCAGCAGGATCGGTAGCA
** * * * * *
6505830 CATAGAGGGGGGCCCGATCGATCCCCGTCTT-AAGCATCCCGCCCCTTTGGTC-AGCTGAGCGCC
648 CGCAGAGGGGGACCCGATCGATCCCCGTATTGCA-CATCCCGCCCCTCTGGCCGA-CTGAGCGCC
*
6505893 CGGACGCTT-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---CT--A-AG-
711 CGCACG-TTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTACAGAGT
* *
6505948 --------A-T-TG-GATCAGACCA----AGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTG
775 TCATTCCCAGTCTGAGATCGGACCAGCTGAGGGTTACGATAGCACATGCTGGGCTC-GGCATGTG
6505998 CTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG
839 CTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
6506039 AACCTGACCGGCGGCACTAGGGTACTGGCAATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTG
1 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* *
6506104 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
6506169 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
6506234 GGGGACACTCTTTT-CAAATGGTCACAGAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
196 GGGGACACT-TTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
6506298 CTGGCCATGGCCAACAAAAAATAAAAGATCACGTCTACCAAGATTTGGGGTGAAAACTTCTTCGA
260 -T-G-CAT-GCCAAC-AAAAATAAAAGATCACGTCT-GCAAG-TTTGGGGCCAAAACTCCTTCGA
*
6506363 AAAAAATTTTAACAAATCCCGAACCGTAAAAGGGTTTCAAAAAACGTGAAAAAATAAAAAACGAG
318 AAAAAATTTTAA-AAAT-CCGAACCGTAAAA--GTTTCAAAAATCGTG-AAAAATAAAAAACGAG
* * *
6506428 TCATCTTCCCATG-AACTTCATGTGAAGGCTT-AGGGACCATTGTATGAATTTACAAAGCCATAA
378 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAA
*
6506491 AAATGGCATTGGCTATGCAGAAATATG-AGA-GTGCCTAAACCGACCTACCACCCTATCGATCCA
442 AAATGGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** *
6506554 CGGCTTGCGCATCCTGTCTCTCTGGCCGATGTAGTGTCCGCCCG-CCCGCCCGCTCGTTTCGTCG
506 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCCGCCCGCTCGTTTCGTCG
* * *
6506618 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGCAGC
571 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT-GAGGGTTGCGGCAGC
* * * * * * *
6506683 AGGATTGGCAGCACGCAGAGGGGGACCCGAACGATCCCC-AATTTGCGCATCCCACCCGTCTGGC
635 AGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGTA-TTGCACATCCCGCCCCTCTGGC
* * * *
6506747 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTA
699 CGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * **
6506812 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGACCGCACATGCTGG
764 AGC-TACAGAGTTCATTCCCAGTCTGAGATCGGACCAG-CTGAGGGTTACGATAGCACATGCTGG
*
6506877 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTCGGAG
827 GCTCG-GCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * * *
6506931 AACCTGACCGGTGGCTTTAGAGTTCCGGCGATTGGTGGGGTCGC-GGGGGTGTGCACACATGATG
1 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGG-GGGGGC-CAGGGGGTGTGCGCACATGATG
*
6506995 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
6507060 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
6507125 ATGAGGACAC-TTTTCTCAAATGCTCACAAAATC
194 ATGGGGACACTTTTTC-CAAATGGTCACAAAATC
6507158 GATCCACGAC
Statistics
Matches: 1665, Mismatches: 170, Indels: 200
0.82 0.08 0.10
Matches are distributed among these distances:
816 70 0.04
817 1 0.00
818 199 0.12
819 26 0.02
820 6 0.00
821 9 0.01
822 3 0.00
823 1 0.00
824 1 0.00
825 1 0.00
826 1 0.00
830 1 0.00
833 2 0.00
834 1 0.00
836 1 0.00
837 1 0.00
840 1 0.00
841 2 0.00
842 183 0.11
843 2 0.00
844 1 0.00
845 2 0.00
846 182 0.11
849 16 0.01
850 20 0.01
852 1 0.00
855 2 0.00
857 2 0.00
861 1 0.00
862 16 0.01
863 22 0.01
864 2 0.00
865 2 0.00
866 265 0.16
867 52 0.03
868 37 0.02
870 2 0.00
871 1 0.00
872 1 0.00
875 2 0.00
882 1 0.00
884 1 0.00
885 1 0.00
886 3 0.00
887 8 0.00
888 2 0.00
889 10 0.01
890 21 0.01
891 203 0.12
892 98 0.06
893 175 0.11
894 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (879 bp):
AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
GCATGCCAACAAAAATAAAAGATCACGTCTGCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATT
TTAAAAATCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGATGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGATCGATCCCCGTATTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTACAGAGTTCATTC
CCAGTCTGAGATCGGACCAGCTGAGGGTTACGATAGCACATGCTGGGCTCGGCATGTGCTGGTGC
CATATTTTTCTTCGTCGGGGCACCATCGTCGGAG
Found at i:6506817 original size:26 final size:26
Alignment explanation
Indices: 6506787--6506839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6506777 GTTGACTTAG
*
6506787 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6506813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6506839 G
1 G
6506840 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6507424 original size:26 final size:26
Alignment explanation
Indices: 6507394--6507446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6507384 GTTGACTCAG
*
6507394 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6507420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6507446 G
1 G
6507447 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6508327 original size:26 final size:26
Alignment explanation
Indices: 6508290--6508342 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6508280 GTTGACTTAG
6508290 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
6508316 GCATACGGAGTTCCTTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6508342 G
1 G
6508343 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6510445 original size:158 final size:159
Alignment explanation
Indices: 6510073--6510448 Score: 472
Period size: 159 Copynumber: 2.4 Consensus size: 159
6510063 CCCGCCCGCC
* * * * * *
6510073 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGACTGGA
1 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACTGAA
* * * *
6510138 CCGGACCGAAGGTTGCGACAGCAGGATTGACAGCACGCAGAGGGGGACCCAGTCGATCCCCGACT
66 CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGACT
6510203 TGCGCATCCCGCCCCTCTGGCCAGCTGAG
131 TGCGCATCCCGCCCCTCTGGCCAGCTGAG
** *
6510232 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA-TCGA
1 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACT-GA
* **
6510296 ACCAGACC-AAGGGTTGCTACAGCAGGATCGGTAGCACACAGAGGGGGACCC-GACCGATCCCCG
65 ACCAGACCGAA-GGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAG-CCGATCCCCG
* * ** * *
6510359 GCTTGTG-ATCTTGCCCCTCTGGCCGGTTGAG
128 ACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * *
6510390 TGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
6510449 CATACGGAGT
Statistics
Matches: 186, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
158 77 0.41
159 109 0.59
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (159 bp):
TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACTGAA
CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGACT
TGCGCATCCCGCCCCTCTGGCCAGCTGAG
Found at i:6510458 original size:26 final size:26
Alignment explanation
Indices: 6510422--6510474 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
6510412 GTTGACTTAG
6510422 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
6510448 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
6510474 G
1 G
6510475 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:6514117 original size:873 final size:872
Alignment explanation
Indices: 6511128--6521597 Score: 11332
Period size: 873 Copynumber: 11.8 Consensus size: 872
6511118 GCCCGCCCGG
* * * **
6511128 CCGCTCGCTCGTTTCGTCGGTT-AGCTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
6511192 GGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCAGGTGCTGGTGCCGCATTTTTCTTTGCC
65 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * * * *
6511257 ---G----A--G-GCAGCATCGCCGGAGAACCTGACCGACGACATTAGGGTTCCTG-CGATCGAG
130 GGGGCACCATCGTGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGG
6511311 GGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
194 GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
6511376 CCCTATCCCTCGTCAAACCTCGAGAACTCACACACCTTTAAAGAGCATTTGAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
6511441 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
6511506 TACACTTTGAGTTTTGATCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
6511571 CAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAATCGTAAAAATTTTCAA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAA
* * *
6511636 AAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
6511701 TTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAATCC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
6511766 CACCTACCACTC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCC
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* ** * * *
6511830 ACCCGCCCGCTCATTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAATCTAAGATCGGAC
712 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * ** * *
6511895 CGGATCAAGGGTTATGGTAGC-AGAAAAGGCAGCATGCAGAGGGGGACCTGG-CTGATCCCCGGC
777 CGGATCGAGGGTTGCGGCAGCAAG-ATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGC
* *
6511958 TTGCGCATCCCACCCCTCTGGCCCGCTGAGCGC
840 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * * * * **
6511991 TCGCATGCTCATTTCGTGTGTTGACTTAAGCATACAGTGTTCATTCCCAGTCTAGGATTGGACCA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
6512056 GATCAAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCTG
66 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* * * * * * *
6512121 TGGCACCATCGTCGGAGCATTGCCAAAGAACCTGACCGGCGACGTTGGGGTTCTGGCGATCGGGG
131 GGGCACCATCGT-GGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * *
6512186 GGTCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTC
195 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * *
6512251 CTGTCCCTCATCAAACCTTGAGAACTCCCACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
6512316 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
** *
6512381 CACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGTGAACAAAAATACAAGGATCACGTCTACT
389 CACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
6512446 ATGTTTGGGGCCAAAACTCCTCCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCGAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
*
6512511 AATCATGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
6512576 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * **
6512641 ACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGATGTAGT----GCCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
*
6512702 CCCGCCCG-TTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGAC
713 CCCGCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * ** *
6512766 CAGATCGAGGGTTACGGTAGCGAGATCGGTAGAACGCAGAGGGGGACCCGACCGATCCCTGGCTT
777 CGGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * *
6512831 GCACATCCCTGCCCCTCTGGTCGACTGAGCGC
842 GCGCATCCC-GCCCCTCTGGCCGGCTGAGCGC
* * * * ** *
6512863 CCGTACGCTCATTTCGTGTGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * *
6512928 GATCAAGGGTTGCGGTAGCACATGCTGGGCTCCGGCATGTGTTGGTGCCGTAATTTTCTTCGTCG
66 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* ** ** * ** *
6512993 GGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACCTACAACGTTGGGGTTTTGACGATCGAGG
131 GGGCACCATCGT-GGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * *
6513058 GGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGTTGGTGCTTGGCCCTTATATTGGCCCC
195 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
6513123 CTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
6513188 CTGCCATTAGCCATTAAAGTGTCTCATATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
6513253 CACTTCGAGTTCTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
389 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
6513318 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGTAAAATGTTTCAAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
*
6513383 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATT
519 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
6513448 GTATGAATTTAAAAGCCATAAAAATAGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCA
584 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* *
6513513 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGC
649 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
6513578 CTGCCCGCTTGTTTCGTTC-GTAGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGTTCAGATC
714 CCGCCCGCTTGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
6513641 GGATCGAGGGTTGCAGCAGCAAGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTA
778 GGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* **
6513706 CTCATCCCGCCTTTCTGGCCGGCTGAGCGC
843 CGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
6513736 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
6513801 GACCGAGGGTTGCGGCTGCACATTCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCG
66 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* * * * * * *
6513866 GGGCACCATCGCTGGAGCATCGTCGGAGAATCTGACCGGCGGCACTAGCGTTCCGGCGATCGGGG
131 GGGCACCATCG-TGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * *
6513931 GGGCCAGGGGGGGTGTGCACACATAATGTGCGATGGGTGCTGGCACTT-GCCCTGATATTGGCCC
195 GGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
6513995 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
6514060 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGCTCACAAAATCTTAT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
6514125 ACACTTCGAGGTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * ** * *
6514190 ATGTTTGGGGCCAAAAATTCATCCGAAAAAATTTTAAAAAATCCCAAACCACAAGAAGTTTCAAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
*
6514255 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * **
6514320 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATAAAGATGTGCCTCGACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
6514385 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
6514450 CCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGGTCAGACC
713 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
6514514 GGATCGAGGGTTGCAGCAGTAAGATCGGTAGCACGCAGAGAGGGACCTGGCCGATCCCCGGC-AG
778 GGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* ** * ** * *
6514578 -GACA-CTCGTTTCGTC-GGTTGACTTAG-GC
843 CG-CATCCCG-CCCCTCTGGCCGGCTGAGCGC
* * * * *** * *
6514606 ATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
1 --CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
6514664 CGGACCGAGGGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-
64 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * *
6514728 C----CA--A--G-GCACCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGG
129 CGGGGCACCATCGTGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * *
6514784 GGGGCCGGGGGGTGTGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATT-GCGCC
194 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CC
* *
6514848 CCTATCCCTCATC--A-CTCGAGAACATCACA-CCGCTTAAAGAGAATTTGAGATTTTACAGGTT
258 CCTATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
6514909 TGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
6514974 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAATGATCACGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** * *
6515039 CAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCAG-ACCGTAAAAAGTTTCAA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAA
* *
6515103 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * *
6515168 TTGTATGAATTTACAAGCCATAAAAAAGGCATTCGTATGCAGAAATATGAAGATGTGCCTAAAAC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
*** * * *
6515233 CACCTACCACCCTATCGAGAAACGGCTTGCGCATCCCGTATCTCTAGACGGCGTAGT--------
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * *
6515290 GCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCGGAC
712 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *** ** * * *
6515355 TGGACCAAGGGTTGTGGCAGC-AGTATCGGCAGCGTACAGAAAGGGACTCGGCCGATCCCCGACT
777 CGGATCGAGGGTTGCGGCAGCAAG-ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
*
6515419 TGCGCATCCCGCCCCTTTGGCCGGCTGAGCGC
841 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
6515451 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGAA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A--G--
* *
6515516 TTCATTCCCAATCAAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
57 ----------ATC--AGA-C----CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** ** * *
6515581 TGCTGGTGCCACATTTTTCTTCAACGGGGCACCATCGTCGGAGCATCATCGAAGAATCTGACCGA
105 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT-GGAGCATCGCCGAAGAACCTGACCGG
*
6515646 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGCATTGTGCGCACATGTTGTGCGATGGGT
169 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG---TGTGCGCACATGATGTGCGATGGGT
*
6515710 GCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
231 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
6515775 AAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACAC
296 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
6515840 TTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTATTTTATGCATGCC
361 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * **
6515905 AACAAAAATACAAGGATCACGTATTCCAAGTTTGGGGCCAAAACTCCGTCCGAAAAAATTAAAAA
426 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*
6515970 AAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
491 AAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
6516034 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGCCAC
555 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * ** *
6516099 ACAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCAG
620 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
6516164 TCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCCCTCTTGTTTCATCCGTTGGCTTAGGAATACA
685 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * * *
6516229 GAGTTCATTCTCAATCTAAGATC-GAACCAGACCAAGGGTTCCGACAGC---A--GGCAGGACGT
750 GAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGC
* * * ** * * **
6516288 AGAGGAGGACCCGATCGATCCCCGACTTTTGGAACCCGCCCCTCTGGCCTACTGAGCGC
814 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
6516347 CCGTATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
6516411 GAACCAAAGGTTGCGGTAGCACTTGCTGGGCTAGGGCATGTGTTGGTGCCGCA-TTTTCTTTCGT
66 G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGC
* ** * *
6516475 CGTGGCACCATCACCGGAGCATCACCGAAGAACCTGACCGGCAGCATTGGGGTTCC-AGCGATCG
129 CGGGGCACCATC-GTGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG
6516539 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
192 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
6516604 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
6516669 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGACACAAAATCTTA
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
6516734 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAATAAAAATACAAGGATCACGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
6516799 CAAGTTTAGGGACAAATCTCCTTCCGAAAAAATTTTAAAAAAAT-CTCGAACCGCAAAAAGTTTC
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCT-GAACCGCAAAAAGTTTC
* *
6516863 AAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
515 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * **
6516928 CATTGTATGAATTTATAAGCCATTAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
580 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* *
6516993 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGC
645 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * *
6517058 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTAATTCCAAGTCTAAGATCAG
710 CCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * **
6517123 ACCGGATTGAGGGTTGCGGTAGCAAGATCGACAGCACACAGAGGGGGACCCGATCAATCCCCAAC
775 ACCGGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
* * * * *
6517188 TTGCTCATCCCGCCCCTCTGACCAGCTGTGCCC
840 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
6517221 CCGCACGCTCATTTCGTTGGTTGACTTGGGCAAACGGAGTTCATTCCCAATCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG
* **
6517286 TTCATAACCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCACATGTTGGGCTCGGTAATG
62 ---------A--C------CAGACC-GA--G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** *
6517351 TGCTGGTGCCACATTTTTCTTCGCCGGGGTGCCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
105 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT-GGAGCATCGCCGAAGAACCTGACCGG
* *
6517416 CGGCATTGGGGTTCCTATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
169 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
6517481 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAAGTCACACCCCCTTAA
233 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
6517546 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
298 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
6517611 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAA
363 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** ** * *
6517676 CAAAGATACAAGGATGATATCTAAAAAAGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTAGAA
428 CAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA-AA
* ** ** *
6517740 AAATCCTGAACTGCAAAAAGTTTTGAAAATGGTGAAAAGTAGAAAACGAGTCGTCTTGCCATGAA
491 AAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
6517805 ACTTCACGTGAAGACTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
556 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
6517870 CAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGC
621 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
6517935 CCCTCTGGCCAGCGTAATGCCCGCCCGCCCGTCCG-TTCGTTTCGTCGGTTGGCTTAGGCATACG
686 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * * * * * *
6517999 GAGTTCATTCCTAGTCAAAGATTGGACCGGACCAAGGGTTGTGGCAACAGGATCGACAGCACGTA
750 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCA
* * ** * *
6518064 GAGGCGGACCCAG-CTGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCAC
815 GAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
6518122 CCGCATGTTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCGGTCTAAGCATATGGAG
1 CCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG-G--CA---------T-A-C----GGAG
* * * * * *
6518187 TTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGGCTGGACATGCTGGGCTCGGGCATG
40 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
6518252 TGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAAAAAACCTGACCGG
105 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT-GGAGCATCGCCGAAGAACCTGACCGG
* * *
6518317 CGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGTGTGCGCAC---A--T--GATGGGTGCT
169 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
6518375 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
234 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
6518440 GACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAGCCATTAAAGTGTCTAAAATGGGGACAT
299 GAGCATTTGAGATTTTACAGGTTTGCTGCC---AGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
6518505 TTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTGTAGCTGAATTTTTTTGTGCATGCC
361 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
6518570 AACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAA
426 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
6518634 AAAT-CTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGA
491 AAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
6518698 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
555 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
6518763 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCG
620 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** ** * *
6518828 TCTCTCTGACCTACGTAACGCCCGCCTGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACG
685 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
6518893 GAGTTCATTCCCAGTCTAAGATCAAACCGGA-CTGAGGGTTGCAGCAGTAGGATTGGCAGCATGT
750 GAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAAGATCGGCAGCACGC
* * * * *
6518957 AGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCTGCCCCTTTGGCCGGCTAAG-GCC
814 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-C
* *
6519016 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATAGGAGT
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG-
* *
6519081 TCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGT
57 --------A-TC--AGACCAGAC----C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * * *
6519146 GCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGCTGAAGCATCGTCGGAGAACCTGACCGGT
106 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-TGGAGCATCGCCGAAGAACCTGACCGGC
* * * *
6519211 GACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGGTGGGTGCTC
170 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * ** * *
6519275 ATACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTAAGAACTCACGCCCCCCTAAAG
235 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
6519340 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTT
300 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
6519405 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
365 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** * * * **
6519470 AAAATACAAGGATAACATCTAAAAAGGTTTGGGGCCAAAATTCCTTCCAAAAAAAATAAAAAAAA
430 AAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** **
6519535 TCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
494 TCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
6519600 TCACGTGGAGGGTTAAGGGACCATTGTATGAATTTAAAAGCCATAAATATGGCATTGGCACACAG
559 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
6519665 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
624 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
6519730 TCTGGTCGGCGTAGTACCCGCCCACCCGCCCGCCCGTTCATTTTGTCGATTGGCTTAGGCATACG
689 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C-TT-GTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
6519795 GAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTACGGCAACAGGATCGACAGCACGCA
750 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCA
* * * * *
6519860 GAGGGGGACCAGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCAC
815 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * * *
6519918 CCGCACATTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAGGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG
* * ** * ** * * *
6519983 TTCATTCCCAG-TCTAGGCATACGG-AGTTCATTCCCA-GTCTAAGATCGGACCGAATCGAG--G
62 ---A---CCAGACCGAGGGTTGCGGCAG--CA----CATG-CTGGGCTCGG---GCAT-GTGCTG
* * * *
6520043 GTTGCAGCAAAACATACTGGGCTTGGGCATGT-GCTGGTGTCGCATTTTTCTTCATCAG-GGCAC
110 G-TGC--C---GCAT--T----TT--TC-T-TCGCCGG-G--GCA-----C--CATC-GTGG-AG
* * * * *
6520106 CATCGCTGAAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCA
147 CATCGCCGAAG-----------AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
*
6520171 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCC
201 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
6520236 TCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
266 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
6520301 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACAGTTCG
331 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
6520366 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC-AGCGATCACTTCTACTAAGTTTG
396 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTG
* * * * *
6520430 GTGCCCAAACTCCTTCC-AAAAATATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATTAT
460 GGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* *
6520494 GAAAAATAGAAAACGAGCCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
524 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
6520559 AATTTAAAAGCCATAAAAATGGCATTGGGACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
589 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
6520624 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTACCCGCCCACCCGCC
654 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * *
6520689 CGCCCGTTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG
719 CG--C-TT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * * *
6520754 ATTGAGGGTTACGGCAACAGGATCGACAGCACGCAGAGGGGGACCAGATCGATCCTCGGCTTGCG
780 ATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* *
6520819 CATCCCGCCCCTCTGGCCTGCTGAGCAC
845 CATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * *
6520847 CCGCACATTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAGGCATATGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A--GA-
** ** ** * * *
6520912 TTCATTCCCAGTCTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTG
58 -TCA-GACCAG---A--CCGA-GG-GTTGC---GGCAG-C--ACAT--G--C---T-G-GGCTCG
* ** * * * ** **** ** *
6520976 CAGCAAAACATACTGG-GCTTGGGCATGTGCTGGTGTCGCCTTTTTCTTCATCAG-GGCACCATC
99 -GGC---ATGTGCTGGTGC---CGCAT-T-TTTCT-TCGCC-GGGGCACCATC-GTGG-AGCATC
* * * * * * * * *
6521039 GCTGAAGCATC-G-CCAG-AGAACCT---G-ACCGACGGCATTGGGGTTCCGGCGATCGGGGGTG
151 GCCGAAGAACCTGACCGGCGGCA-TTGGGGTTCCGAC-G-A-T---C-------G---GGGGG-G
*
6521097 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
198 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
6521162 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGC
263 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
6521226 CAGTAGCTATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACT
328 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
6521291 TCGAGTTTTTAGCTTAATTATTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTT
393 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * ***
6521356 TGGGGCC-AAACATTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGGAAATC
458 TGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* *
6521420 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
522 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** *
6521485 TGAATTTACAAGCCATAAAAATGGCAGTGGCACTTAGAAATATGAAGATGTG-CTGAAACCAACC
587 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACC
6521549 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
651 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
6521598 CACCATCGTC
Statistics
Matches: 8205, Mismatches: 1048, Indels: 643
0.83 0.11 0.06
Matches are distributed among these distances:
841 43 0.01
842 60 0.01
843 8 0.00
844 14 0.00
845 5 0.00
846 1 0.00
847 1 0.00
849 183 0.02
850 221 0.03
851 6 0.00
852 38 0.00
853 24 0.00
854 48 0.01
855 1 0.00
856 1 0.00
857 1 0.00
858 1 0.00
860 2 0.00
863 105 0.01
864 2 0.00
865 94 0.01
866 2 0.00
868 274 0.03
869 286 0.03
870 108 0.01
871 416 0.05
872 405 0.05
873 917 0.11
874 485 0.06
875 87 0.01
876 64 0.01
877 4 0.00
878 2 0.00
881 2 0.00
883 3 0.00
885 5 0.00
886 30 0.00
887 45 0.01
888 7 0.00
889 60 0.01
890 3 0.00
891 17 0.00
892 221 0.03
893 395 0.05
894 358 0.04
895 37 0.00
896 336 0.04
897 29 0.00
898 211 0.03
899 100 0.01
900 121 0.01
901 778 0.09
902 188 0.02
903 1 0.00
905 4 0.00
906 5 0.00
907 2 0.00
908 4 0.00
909 3 0.00
910 1 0.00
911 3 0.00
912 7 0.00
913 2 0.00
914 2 0.00
915 3 0.00
916 4 0.00
917 2 0.00
918 15 0.00
919 1 0.00
922 1 0.00
923 2 0.00
925 2 0.00
926 2 0.00
927 25 0.00
928 350 0.04
929 628 0.08
930 238 0.03
933 1 0.00
934 1 0.00
935 3 0.00
936 6 0.00
937 6 0.00
938 3 0.00
939 2 0.00
940 4 0.00
941 2 0.00
943 1 0.00
944 5 0.00
946 5 0.00
947 2 0.00
948 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
GGGCACCATCGTGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
GCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
TCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGC
Found at i:6514640 original size:26 final size:26
Alignment explanation
Indices: 6514604--6514656 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6514594 GTTGACTTAG
6514604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6514630 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6514656 G
1 G
6514657 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6518206 original size:901 final size:898
Alignment explanation
Indices: 6516376--6521593 Score: 6750
Period size: 929 Copynumber: 5.7 Consensus size: 898
6516366 GTTGACTTAG
* * * * * *
6516376 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGGTAGCACTTGCTGGG
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAAGGTTGCGGCAACACATGCTGGG
* * * * * * * * *
6516441 CTAGGGCATGTGTTGGTGCCGCA-TTTTCTTTCGTCGTGGCACCATCACCGGAGCATCACC-GAA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTC-TTCATCGGGGCACCATCGCTGAAGCATCGCCAG-A
*
6516504 GAACCTGACCGGCAGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
6516568 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
6516633 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * *
6516698 ATGAGGACACTTTTTTCAAATGGACACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
6516763 TGTCCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAATCTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* * * *
6516828 AAATTTTAAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCG
452 AAAATTT-AAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
6516892 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATTAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
6516957 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
6517022 TGCGCATCCCGTCTCTCTAGCC-GACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGG
645 TGCGCATCCCGTCTCTCTGGCCAG-CGTAACGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGG
* * * * * *
6517086 CTTAGGCAGACGGAGTTAATTCCAAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAAGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGAT
* * ** * * *
6517151 CGACAGCACACAGAGGGGGACCC-GATCAATCCCCAACTTGCTCATCCCGCCCCTCTGACCAGCT
774 CGACAGCACGCAGAGGGGGACCCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG-GCTGCT
* * * * * * * *
6517215 GTGCCCCCGCACGCTCATTTCGTTGGTTGACTTGGGCAAACGGAGTTCATTCCCAATCTAA
838 GAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * * *
6517276 GCATACGGAGTTCATAACCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCACATGTTGGG
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAAGGTTGCGGCAACACATGCTGGG
** * * ** ** * *
6517341 CTCGGTAATGTGCTGGTGCCACATTTTTCTTCGCCGGGGTGCCATCG-TCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCT-GAAGCATCGCCAGAG
* *
6517405 AACCTGACCGGCGGCATTGGGGTTCCTATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
6517470 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
6517535 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
6517600 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** ** *
6517665 GTGCATGACAACAAAGATACAAGGATGATATCTAAAAAAGTTTGGGGCCAAAAATCCTTCCAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* ** * *
6517730 AAATTTAGAAAAATCCTGAACTGCAAAAAGTTTTGAAAATGGTGAAAAGTAGAAAACGAGTCGTC
453 AAATTTA-AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
6517795 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
6517860 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
6517925 CGCATCCCGCCCCTCTGGCCAGCGTAATGCCCGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCAGCGTAACGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTT
* * ** *** *
6517990 AGGCATACGGAGTTCATTCCTAGTCAAAGATTGGACCGGACCAAGGGTTGTGGCAACAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGATCGA
* * * **
6518055 CAGCACGTAGAGGCGGACCCAGCT-GATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
777 CAGCACGCAGAGGGGGACCCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GCTGAG
* * *
6518119 CACCCGCATGTTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCGGTCTAA
841 CACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * ***
6518177 GCATATGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGGCTGGACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAAGGTTGCGGCAACACATGCTGGG
* * * * *
6518242 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCAAAA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCT-GAAGCATCGCCAGAG
* * *
6518306 AACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGTGTGCGCAC---A--T-
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
6518365 -GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
6518429 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAGCCATTAAAGTGTCTAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC---AGTAGCCATTAAAGTGTCTAA
* * * *
6518494 AATGGGGACATTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTGTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
6518559 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* *
6518624 AAAATTTAAAAAAT-CTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGT
452 AAAATTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
6518688 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
6518753 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
6518818 GCGCATTCCGTCTCTCTGACCTA-CGTAACGCCCGCCTGCCCGCCCGCTT-GTTTCGTCAGTTGG
646 GCGCATCCCGTCTCTCTGGCC-AGCGTAACGCCCGCCCGCCCGCCCG-TTCGTTTCGTCGGTTGG
* * * **
6518881 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGAT
* * * * ** * * * *
6518946 TGGCAGCATGTAGAGGGGGACCC-GGCCGATCCCCGGCTTACGCATCCTGCCCCTTTGGCCGGCT
774 CGACAGCACGCAGAGGGGGACCCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGCT
* * * *
6519010 AAGGC-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
838 GA-GCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
6519071 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAACACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAAGGTTGCGGCAACACATGCTGGG
* * * *
6519135 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGCTGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCGCCAGAGA
* * *
6519200 ACCTGACCGGTGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ** * * *
6519264 GGTGGGTGCTCATACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTAAGAACTCACG
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
6519329 CCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
6519394 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
6519459 GCATGCCAACAAAAATACAAGGATAACATCTAAAAAGGTTTGGGGCCAAAATTCCTTCCAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCC-AAAAA
** * ** *
6519524 AATAAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 AATTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
6519589 GCCATGAAACTTCACGTGGAGGGTTAAGGGACCATTGTATGAATTTAAAAGCCATAAATATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
6519654 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
6519719 CATCCCGTCTCTCTGGTCGGCGTAGTACCCGCCCACCCGCCCGCCCGTTCATTTTGTCGATTGGC
649 CATCCCGTCTCTCTGGCCAGCGTA--A--CGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
* * *
6519784 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTACGGCAACAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGATC
*
6519849 GACAGCACGCAGAGGGGGA-CCAGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTG
775 GACAGCACGCAGAGGGGGACCCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGCTG
* * * * *
6519913 AGCACCCGCACATTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAG
839 AGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
6519973 GCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAT
1 GCATATGGAGTTCATTCCCAG--T----ATA---AG---------A-TC--AGACCGGACCG-A-
* * * * *
6520038 CGAGGGTTGCAGCAAAACATACTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCAGGG
43 --A-GGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGG
* * *
6520103 CACCATCGCTGAAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTG
105 CACCATCGCTGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
6520168 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
6520233 CCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
235 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
6520298 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACAGT
300 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
6520363 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC-AGCGATCACTTCTACTAAGT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGT
* * * * * *
6520427 TTGGTGCCCAAACTCCTTCCAAAAATATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATT
429 TTGGGGCCAAAACTCCTTCCAAAAA-AATTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* * *
6520492 ATGAAAAATAGAAAACGAGCCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
6520557 TGAATTTAAAAGCCATAAAAATGGCATTGGGACACAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
6520622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTACCCGCCCACCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTA--A--CGCCCGCCCG
* * * *
6520687 CCCGCCCGTTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
684 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
6520752 AGATTGAGGGTTACGGCAACAGGATCGACAGCACGCAGAGGGGGA-CCAGATCGATCCTCGGCTT
749 GGATTGAGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCCAGATCGATCCCCGGCTT
* * *
6520816 GCGCATCCCGCCCCTCTGGCCTGCTGAGCACCCGCACATTCGTTTCGTGGGTTGACTTAGCCATA
814 GCGCATCCCGCCCCTCTGG-CTGCTGAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATA
* *
6520881 CAGAGTTCATCCCCAGTCTAG
878 CAGAGTTCATTCCCAGTCTAA
*
6520902 GCATATGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAT
1 GCATATGGAGTTCATTCCCAG--T----ATA---AG---------A-TC--AGACCGGACCG-A-
* * * * * *
6520967 CGAGGGTTGCAGCAAAACATACTGGGCTTGGGCATGTGCTGGTGTCGCCTTTTTCTTCATCAGGG
43 --A-GGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGG
* * *
6521032 CACCATCGCTGAAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTG
105 CACCATCGCTGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
6521097 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
6521162 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGC
235 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
6521226 CAGTAGCTATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACT
300 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
6521291 TCGAGTTTTTAGCTTAATTATTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * ***
6521356 TGGGGCC-AAACATTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGGAAATC
430 TGGGGCCAAAAC-TCCTTCC-AAAAAAATTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
*
6521420 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** *
6521485 TGAATTTACAAGCCATAAAAATGGCAGTGGCACTTAGAAATATGAAGATGTG-CTGAAACCAACC
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACC
6521549 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
6521594 GGCGCACCAT
Statistics
Matches: 3866, Mismatches: 379, Indels: 118
0.89 0.09 0.03
Matches are distributed among these distances:
892 22 0.01
893 240 0.06
894 381 0.10
895 40 0.01
896 227 0.06
897 22 0.01
898 202 0.05
899 96 0.02
900 155 0.04
901 777 0.20
902 213 0.06
903 15 0.00
905 1 0.00
909 2 0.00
912 2 0.00
921 1 0.00
922 2 0.00
924 8 0.00
925 1 0.00
927 6 0.00
928 342 0.09
929 873 0.23
930 238 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAAGGTTGCGGCAACACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCGCCAGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCAGCGTAACGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGATCGACAGC
ACGCAGAGGGGGACCCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGCTGAGCACCC
GCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:6519083 original size:25 final size:26
Alignment explanation
Indices: 6519045--6519096 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
6519035 GTTGACTTAG
*
6519045 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6519071 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6519096 G
1 G
6519097 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6519984 original size:26 final size:26
Alignment explanation
Indices: 6519948--6520023 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
6519938 TTGACTTAGC
* *
6519948 CATACAGAGTTCATCCCCAGTCTAGG
1 CATACGGAGTTCATTCCCAGTCTAGG
6519974 CATACGGAGTTCATTCCCAGTCTAGG
1 CATACGGAGTTCATTCCCAGTCTAGG
6520000 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
6520024 AGATCGGACC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAGG
Found at i:6520913 original size:26 final size:26
Alignment explanation
Indices: 6520877--6520952 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
6520867 TTGACTTAGC
* *
6520877 CATACAGAGTTCATCCCCAGTCTAGG
1 CATACGGAGTTCATTCCCAGTCTAGG
*
6520903 CATATGGAGTTCATTCCCAGTCTAGG
1 CATACGGAGTTCATTCCCAGTCTAGG
6520929 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
6520953 AGATCGGACC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAGG
Found at i:6522154 original size:557 final size:555
Alignment explanation
Indices: 6521055--6522154 Score: 1738
Period size: 557 Copynumber: 2.0 Consensus size: 555
6521045 GCATCGCCAG
*
6521055 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTGTGCGCACATGATG
1 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTGTGCGCACATGATA
* *
6521120 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
66 TGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
6521185 ACACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCTATTAAAGCGTCTGAAA
131 ACAACCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
* *
6521250 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTTAATTATTTT
196 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
* * *** *
6521315 GTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAACATTCTTCCGAAAA
261 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAAAACATCCTTCCGAAAA
* * *
6521380 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGGAAATCGTGAAAAATAGAAAACGAGTCGTCT
326 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGACTCGTCT
*
6521445 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
391 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
* * *
6521510 AGTGGCACTTAGAAATATGAAGATGTGCTGAAACCAACCTACCACCCTATCGATCCACGGCTTGC
456 AGTGGCACTCAAAAATATGAAGATGTGCTGAAACCAACCTACCACCCTATCGATCCACAGCTTGC
6521575 GCATCCCGTCTCTCTGGCCGGCGCACCATCGTCGA
521 GCATCCCGTCTCTCTGGCCGGCGCACCATCGTCGA
* * * * *
6521610 AGAACCTGTCCGGCGGCATTGGGGTTCTGGTGATCGGGGG-GGCAGTGGGGGTGTGCGCACATGA
1 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCA--GGGGGTGTGCGCACATGA
6521674 TATGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
64 TATGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
6521739 TCACAACCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTG
129 TCACAACCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTG
* * *
6521804 AAATGGGGACATTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
193 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTAT
* *
6521869 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAAAACCTCCTTTCGA
258 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAAAACATCCTTCCGA
* *
6521934 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGACTCG
323 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGACTCG
* * * *
6521999 TCTTGCCATGAAACTTGACGTGAAGTCTTAAGGGACCATTTTATGAATTTACAAGCCACAAAAAT
388 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAT
* * * *
6522064 GGCATTGGCA-TGCAAAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATTGATTCACAG
453 GGCAGTGGCACT-CAAAAATATGAAGATGTG-CTGAAACCAACCTACCACCCTATCGATCCACAG
*
6522127 CTTGTGCATCCCGTCTCTCTGGCCGGCG
516 CTTGCGCATCCCGTCTCTCTGGCCGGCG
6522155 TAGTGCCCGC
Statistics
Matches: 496, Mismatches: 44, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
554 3 0.01
555 36 0.07
556 106 0.21
557 349 0.70
558 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (555 bp):
AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTGTGCGCACATGATA
TGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACAACCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAAAAAACATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGACTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
AGTGGCACTCAAAAATATGAAGATGTGCTGAAACCAACCTACCACCCTATCGATCCACAGCTTGC
GCATCCCGTCTCTCTGGCCGGCGCACCATCGTCGA
Found at i:6522388 original size:25 final size:26
Alignment explanation
Indices: 6522353--6522402 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
6522343 GTTCACTTAG
6522353 GCATACAGAGTTCATTCC-AGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
6522378 GCATACGGAGTTCATTCCAAGTCTA
1 GCATACAGAGTTCATTCCAAGTCTA
6522403 TGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:6523273 original size:26 final size:26
Alignment explanation
Indices: 6523244--6523294 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6523234 TGACTTAGGT
*
6523244 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
6523270 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
6523295 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:6525881 original size:26 final size:26
Alignment explanation
Indices: 6525852--6525902 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6525842 TTGACTTAGG
**
6525852 CATACGGAGTTCATTCGTAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
6525878 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6525903 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:6526768 original size:26 final size:26
Alignment explanation
Indices: 6526739--6526790 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6526729 TTGACTTAGT
6526739 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
6526765 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
6526791 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:6527659 original size:26 final size:26
Alignment explanation
Indices: 6527629--6527681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6527619 GTTGACTTAG
*
6527629 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
6527655 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
6527681 G
1 G
6527682 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:6528197 original size:904 final size:899
Alignment explanation
Indices: 6524982--6532152 Score: 8880
Period size: 904 Copynumber: 8.1 Consensus size: 899
6524972 GTTGACTTAG
** * * *
6524982 GCATA-GGAAGTTCATTCCCAGTCTAAGATCAAATCAGACTGAGGTTTGTGACAGCACATGCTGG
1 GCATATGG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG-TTGCGACAGCACATGCTGG
* *
6525046 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAG
* * * *
6525111 AACCTGACC-AGCGTCATTGGGGTTCCGGA-GATCGGGGGGGTCGGGTGGGTGTGCGCACATGAT
128 AACCTGACCGA-CGGCATTAGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
6525174 GTGTGATGGGTGCTGGTACTTTGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
6525239 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCGTTAAAGTGTTTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
6525304 AATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
6525368 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTATGTTTGGGGCCAAAACTCCTTCTGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAA
* *
6525433 AAAATTTAAAAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAACAGAAAACGAGTCGT
450 AAAATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
6525498 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTAATAAAAATA
515 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
6525563 TAATTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATTGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
6525628 GCGCATCCCGTCTCTCTGGCCGACGT--G--G--TGCCCACCCGCCCGCTCGTTTCGTCGGTTGG
645 GCGCATCCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
6525687 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
* * * * ** * *
6525752 TGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGATTTGTGCACCCCGCCCCTCTGGCCGGCTG
775 CGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * **
6525817 AGCGCTCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
6525877 ACATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGC-AGCAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG-GTTGCGA-CAGCACATGCTGG
*
6525941 GCTCGGGCATGTGCTGGTGCCACA-TTTTCTTCGTCGGGG-A--A---C----CATCGCC-GAGA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGA
* * * * * * ***
6525994 ACCTGACCGATGGCCTTGGGGTTCTGATGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGCAT
129 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
6526059 GATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
** * * *
6526124 CCCATTTAAAGACCATTTGAGATTTTACAGGTTT-CTGCTAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
6526188 GGGTA-A-TTTTTTCAAATGGTCACAAAATCTTTTACACTTCCAGTTTTTAGCTGAATTTTTTTG
324 GGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
6526251 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGTTCAAAAACTCCTTCCAGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
* * * * * * *
6526316 TTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG-CCT
453 ATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCC-
* * * * *
6526380 TGCCACGAAACTTCACGTGAAGGCCTAACGTACCATTGTATGATTTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
6526445 ATTGGCACACAGGAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
6526510 GCATCCCGTCTATCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCTCTCATTTTGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTA-CG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
6526575 CTCAGGCATACGAAGTTCATT-CCAATCTAAGATCAGACCAGATCGAGGGCTATGGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
* * *
6526639 CGACGGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGACCGGCTG
775 CGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
6526704 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
6526764 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGACAGCACATGCTGGG
* * *
6526829 CTCGGACGTGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGC----CA------GAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAA
* * * * ***
6526884 CCTGACTGACGGCATTAGGGTTCCAACGATCGGGGGGTCGGGGGGGTGTGGGCACATGATGCATG
130 CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
6526949 ATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * *
6527014 CCCCTTAAAGAGCATTTGATATTTTACAGGTTT-CTGTCATTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
6527078 GGACACTTTTTTGAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAACTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** *
6527143 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTT-TCGAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAAA
* * * ** *
6527207 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTG
* * * * *
6527272 CCTTGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTCTGAATTTACAAGCCACAAAAATGGCGT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
6527337 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
6527402 GTCCCGTCTCTCTGGTCGGTGCAGCGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCT
649 ATCCCGTCTCTCTGGCCGGCGTA-CGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * ** * *
6527467 TAGGCATAAGGAGTTCATTCTCAGTCTAAGATTGGACCGGATCGAGGGTTGCGATAGCAAGATTG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
** * * * * * * ** *
6527532 GTAGCATGTAGAGGGGGACTCGGCCAATCCTCGGCTTGCACATCCCGCCATTCTGGCTGGCTGAG
777 ACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
6527597 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
6527655 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTACTACAGCACATGCTGGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCGACAGCACATGCTGGGC
* * *
6527720 TCGGGAATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGTAGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAA
*
6527785 CCTGACCGACGGCATT-GGTGTTCCGGCGATCGGGGGAGCCGGGTGGGGTGTGCGCACATGATGT
130 CCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGG-GCCGGG-GGGGTGTGCGCACATGATGT
* * *
6527849 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCTCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
6527914 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
6527979 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
6528044 GTGCATGCCAACAAAAATAAAAGGATCACGTCCACCACGTTTGGGGCCAAAAATTCTTCTAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
* ** *
6528109 AATTTAAAAAAATCCCGAACCGTAAAAACTTTTGAAGATCATGAAAAATAGAAAACGAGTCGTCC
452 AATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCC
** *
6528174 TGCCAT-AACACTTCACGTGAAGGCTTAAATGACCATCGTATGAATTTACAAGCCATAAAAATGG
517 TGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
6528238 AATTGGCATGCCGATATATGAAGATGCT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 CATTGGCACGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
6528302 ACGCATCCCGTCTCTCTGGCCGGTGTGGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGT-ACG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * * *
6528367 GGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCGTACCAAGGGTTGTGGCAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGG
*** * ** * *
6528432 ATCGGTTGCACGTAGAGGGGGACCCGATTGATCC-CTGGCTTGCGCACCCCGCCCCTCTGGCCAG
773 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGG
*
6528496 CTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTCA-GCATACGGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
6528559 GCATACGAAGTTCATTCCTAGTCGATGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGACAGCACATGCTGGG
* ** * * *
6528624 CTCGAGCATAAGCTGGTGTCGCTTTTTTCTTTGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAGA
*
6528689 ACCTGACCGACGGCATTAAGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
6528753 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTCCTCATCAAACCTTGAGAACTCAC-
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
6528817 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
6528882 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6528947 GCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAA
* * *** * * *
6529011 ATTTTAAAAAATCTCGAAGAACAAAAACTTTCAAAAATCTTGAAAAATAGAAAACCAGTCGTCTT
453 ATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCT
* *
6529076 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
6529141 TTGGCACGTAGAAATATGAAGATGTGCCTAGACCGACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
6529206 CATCCCGTCTCTCTGGCCGACGTA-G-TGCCCGCCCACCCGCCCGCTCGTTTCGTGGGTTGGCTT
648 CATCCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
6529269 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-A
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
6529333 TCAACACGTAGTGGGTGACTCGGCCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCAGGCTAAG
778 -CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
6529398 CG-CC-CTCG--CG---C-T-CGTTG---T-----T-----G---ATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
6529431 GCAT-TCAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATAT-GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGACAGCACATGCTGG
*
6529495 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAG
* * * * * *
6529560 AACCTGACCGGCGGCTTTAGGGTTCCGACGATCGGGGAGCC-AGGGAGTGTGCGCACGTGATGTG
128 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
6529624 CGATGGGTGCTGGAACCTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGTGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
6529689 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
6529754 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * **
6529819 TACATGCCAACAAAAAAACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
* * * *** * *
6529884 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGGAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCT
* *
6529949 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
6530014 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACC
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** *
6530079 CATCCCGTCTCTTTGGCCGGCGTA-G-TGCCCGCCCGTCCGTTCGCTCGTTTCATCGGTTGGCTT
648 CATCCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * ** * *
6530142 AGTCATACGGAGTTCATTGCCAATCTAAGATTAGACCAGACCTAGGGTTGCAGTAGCAGGATCAA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * ** * *
6530207 CAGCGCACAGAGGGGGA-CCGATCGATCCCCAACTTGCGCATGCCGCCCGTCTGGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
6530271 ACCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
6530328 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGGGGGTT-CGACAGCACAAGCTGGA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-GAGGTTGCGACAGCACATGCTGGG
* * * ** *
6530392 CTCGAGCATCTGTTGGTGCCGCATTTTTCTTCACCGGGGCACTATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
** *
6530457 ACCTGACCCG-CGGCATT-GGGTTTCCGGTGATCGGGGGGGTCGGGGGGGGCGGTGTGCGCACAT
129 ACCTGA-CCGACGGCATTAGGG-TTCCGACGATC-GGGGGG-C--CGGGGG-GGTGTGCGCACAT
* * *
6530520 GATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
*
6530585 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTC
252 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
6530650 TGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCATATACACTTCGAGTTTTTAGCTGAAAT
317 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** *
6530715 TTTTTGTGCAAGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGATCGAAAA-TCCTTC
382 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTC
* * * ** * *
6530779 TAAAAAAATTTAAAAAAACCCCGAACCACAGAATGTTTCAAAAATCGTGAAAAATAAAAAACGAG
446 TAAAAAAATTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * * *
6530844 TCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACGACTGTATGAATTTAGAAGCCATAAA
511 TCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
6530909 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
576 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * ** * **
6530974 GCTTGCGCATCCCGTCTCTCAGGCCAGCGTAGTGCCTGCCTGCCCATCCGCCCGCTCATTTTATC
641 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-CGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * *
6531039 GGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAG
704 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG
* * * * * * *
6531104 CAGGATCAACAGCACGC-GTAAGGGGACCCGATCGAT-CTTGGCTTGTGCATCCCTCCCCTTTGG
769 CAGGATCGACAGCACGCAG-AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
* *
6531167 CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
833 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
6531232 --
898 AA
* ** *
6531232 --A-A--GA--TCA-----AATC--A-A----A-CAGA--G-GGTTGCGATGGCACATGCTAGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCGACAGCACATGCTGGGC
* * * *
6531274 TCTGGCATTTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCAT--------A--GCCGGAGAAC
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAAC
* * * * *
6531329 CTGACCGGCGTCATTAGGGTTCCGATGATCGGGGGGTC-GGGGGGTGTGCACACATGATGTGCGA
131 CTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
6531393 TGGGTGCTGGTACTTTGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
6531458 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCGTTAAAGTGTTTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
6531523 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
6531588 ATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
* *
6531653 TAAAAAAATCTCGAACCGCAAAATCTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCC
456 TAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCC
* * ***
6531718 ATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTAGGAATTTACAAGCCATAAAAATATAATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
6531783 GCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
586 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
6531848 CCCGTCTCTCTGGCCGACGT--G--G--TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
651 CCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** ** *
6531907 CATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGTGGTAGCAGGATC-AGCA
716 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-CA
* * *** * * *
6531971 GCACGCAGAGGGGGACCCGATCGATCCCCAATTTACGCA-CCCTGCCCCTCTGGTCGGTTGAGCG
780 GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGCG
* *
6532035 CTCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
6532091 ACATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCACAGCACATGCT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGACAGCACATGCT
6532153 TGAGAACTCA
Statistics
Matches: 5454, Mismatches: 680, Indels: 296
0.85 0.11 0.05
Matches are distributed among these distances:
855 1 0.00
856 112 0.02
857 74 0.01
858 1 0.00
861 2 0.00
862 1 0.00
863 7 0.00
864 447 0.08
865 4 0.00
866 3 0.00
869 9 0.00
870 30 0.01
871 6 0.00
872 276 0.05
873 480 0.09
874 5 0.00
875 1 0.00
876 2 0.00
878 1 0.00
879 28 0.01
880 312 0.06
881 179 0.03
882 27 0.00
883 24 0.00
884 5 0.00
885 2 0.00
886 1 0.00
887 224 0.04
888 66 0.01
889 190 0.03
890 417 0.08
891 180 0.03
892 3 0.00
893 3 0.00
894 20 0.00
895 81 0.01
896 98 0.02
897 201 0.04
898 2 0.00
899 3 0.00
900 4 0.00
901 408 0.07
902 531 0.10
903 125 0.02
904 563 0.10
905 111 0.02
906 175 0.03
907 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
TAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:6528570 original size:26 final size:26
Alignment explanation
Indices: 6528532--6528581 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6528522 GGTTGACTTC
*
6528532 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
*
6528558 AGCATACGAAGTTCATTCCTAGTC
1 AGCATACGAAGTTCATTCCCAGTC
6528582 GATGATTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:6530338 original size:26 final size:26
Alignment explanation
Indices: 6530302--6530354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6530292 GTTGACTTAG
*
6530302 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6530328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6530354 G
1 G
6530355 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6532102 original size:26 final size:26
Alignment explanation
Indices: 6532066--6532116 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6532056 TTGACTTAGG
6532066 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
6532092 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6532117 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:6532818 original size:26 final size:25
Alignment explanation
Indices: 6532782--6532839 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 25
6532772 TTGACTTAGT
6532782 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6532807 GCATACGGAGTTCATTCCCAGTCTAA
1 -CATACGGAGTTCATTCCCAGTCTAA
6532833 CAT-CGGA
1 CATACGGA
6532840 CCAGACCGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCAGTCTAA
Found at i:6533701 original size:26 final size:26
Alignment explanation
Indices: 6533671--6533723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6533661 GTTGACTTAG
*
6533671 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
6533697 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
6533723 G
1 G
6533724 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:6534606 original size:26 final size:25
Alignment explanation
Indices: 6534577--6534634 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 25
6534567 TTGACTTAGT
6534577 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6534602 GCATACGGAGTTCATTCCCAGTCTAA
1 -CATACGGAGTTCATTCCCAGTCTAA
6534628 CAT-CGGA
1 CATACGGA
6534635 CCGGACCGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCAGTCTAA
Found at i:6535497 original size:26 final size:26
Alignment explanation
Indices: 6535467--6535519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6535457 GTTGACTTAG
*
6535467 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
6535493 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
6535519 G
1 G
6535520 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:6535598 original size:891 final size:891
Alignment explanation
Indices: 6532154--6537250 Score: 6463
Period size: 890 Copynumber: 5.7 Consensus size: 891
6532144 GCACATGCTT
* * *
6532154 GAGAACTCACACCCACTTAAAGACCATTTGAGATTTTACAGGTTCCTGCCAGTAGCCATTAAAGT
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGT
** * *
6532219 GTCTGAAATGGGGGTAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** *
6532284 ATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCAAAAAATCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
** *
6532349 TCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACG
196 TCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
6532414 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-CATGAATTTACAAGCCAT
261 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTC-TGAATTTACAAGCCAC
* *
6532478 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCC
325 AAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
6532543 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCTCCCACCCGCCCGCCCGTTCATTTT
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTC
* ** * *
6532608 GTCGGTTGGCTCAGGCATACA-AAGTTTGTTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTG
455 GTCGGTTGGCTTAGGCATA-AGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
*
6532672 GCAGCAGGATCGGTAGCACGCAGCGGGGGACCCGAT-CGATCCCCGGCTTGCGCACCCCGCCCCT
519 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGCGCACCCCGCCCCT
* *
6532736 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCA
583 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
6532801 GTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGACCAGACCGAGGGTTTCAGTAGCATAT
648 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCA-CAGCACAT
* * *
6532866 GCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CATAGAACCT
712 GCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCACATAGAACCT
* * * ***
6532930 AACCGACGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG-GTGCGCACATGATGCATGATG
777 GACCGACGGCATTCGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
6532994 GGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTT
842 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
6533044 GAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTCTGCCATTAGCCATTAAAGT
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGT
* *
6533109 GTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * *
6533174 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAGAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* *
6533239 TCTGAAAAAATTTTAAAAAATC-CGAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
196 TCTGAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
** *
6533303 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTTACCCTTGTCTGAATTTACAAGCCAC
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTCTGAATTTACAAGCCAC
** * * *
6533368 AAAAATGGTGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATTC
325 AAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
6533433 ACGGCTTGCGCGTCCCGTCTCTCTGGTCGGCGTAGTGCACGCTCGCCCGCCCGCCCGCTCGTTTC
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTC
* * * ** *
6533498 GTCGGTTAGCTTAGGCATAAGGAGTTCATTCTCAGTCCAAGATTGGACCGGACCGAGGGTTGTGG
455 GTCGGTTGGCTTAGGCATAAGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* * * * *
6533563 CAGCAGGATCGGTAGCATGCAGAGGGGGACCCGTCCGATCCTCGGCTTGCACATCCCGCCCGTCT
520 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCACCCCGCCCCTCT
* ** * **
6533628 GGCTGGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGT
585 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
6533693 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTACAGCACATGC
650 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACATGC
* * *
6533758 TGGGCTCGGGAATGTGCTGGTGTTGTATTTTTCTTCATCGGGGCACCATCGTTGTAGCAGCACCG
714 TGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATC------GCA-CA---
* * * * * * * *
6533823 GAGAACCTGACCGGCGGCATTCGAGTTCTGGCGATCGAGGGAGCCGGATGGGGTGTGCGGACATG
769 TAGAACCTGACCGACGGCATTCGGGTTCCGACGATCG-GGGGGCCGG-GGGGGTGTGCGCACATG
* ** * **
6533888 ATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGAACCCCTATCTCTTGTCAAACCTC
832 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
6533948 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGTGCCAGTAGCCATTAAAG-
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGT
* * **
6534012 GATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCGAGGGTTTAGCTG
66 G-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
6534077 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTGC-ACCACGTTTGGGGCCAGAAATT
130 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAAATC
* * * * * *
6534141 CTTTTGAAAAAATTTAAAAAAAACTCGAACCGCAAAAACTTTCAAAGATCGTGAAAAATAGAAAA
194 CTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
6534206 CGAGTCGTCCTGTCATGAAACTTAACGTGAAGGCTTAAAGGAACCATTGTAC-GAATTTACAAGC
259 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGAACCATTGT-CTGAATTTACAAGC
* * *
6534270 CATAAAAATGGAATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGA
322 CACAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
6534335 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCTCCCACCCGCCCGCCCGTTCAT
387 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGT
* * ** * *
6534400 TTTGTCGGTTGGCTCAGGCATACA-AAGTTTGTTCTCAGTCTAAGATCAAACCAGACCAAGGGTT
452 TTCGTCGGTTGGCTTAGGCATA-AGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTT
*
6534464 GTGGCAGCAGGATCGGTAGCACGCAGCGGGGGACCCGAT-CGATCCCCGGCTTGCGCACCCCGCC
516 GTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGCGCACCCCGCC
* * * * *
6534528 CCTCTGGCCGACTGAGCCCCCGTACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTC
580 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
6534593 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTTCAGCAGCA
645 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCA-CAGCA
* * * *
6534658 TATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CATAGAA
709 CATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCACATAGAA
* * ***
6534722 CCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGCATG
774 CCTGACCGACGGCATTCGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
6534787 ATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTT
839 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
6534840 GAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTCTACCATTAGCCATTAAAGT
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGT
* *
6534905 GTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * * *
6534970 ATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCTAGAACTCCT
131 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* *
6535035 TCTGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
196 TCTGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
** *
6535099 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTTACCCTTGTCTGAATTTACAAGCCAC
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTCTGAATTTACAAGCCAC
** **
6535164 AAAAATGGTGTTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
325 AAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
6535229 ACGGCTTGCGCGTCCCGTCTCTCTGGCAGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTC
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTC
* * * ** * *
6535294 GTCGGTTAGCTTAGGCATAAGGAGTTCATTCTCAGTCCAAGATTGGATCAGACCGAGGGTTGCGG
455 GTCGGTTGGCTTAGGCATAAGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* * * * * *
6535359 TAGCAGGATCGGTAGCATGCAGAGGGGGACCCGTCCAATCCTCGGCTTGCACATCCCGCCCCTCT
520 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCACCCCGCCCCTCT
* * * * **
6535424 GGCTGGCTAAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGT
585 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
6535489 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTACAGCACATGC
650 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACATGC
* * **
6535554 TGGGCTCGGGAATGTGCTGGTGCTATATTTTTCTTCACCGGGGCACCATCGTCGTAGCATCACCG
714 TGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCG-C--A-CAT-----
* * * * *
6535619 GAGAACCTGACCGGCGGCATTCGGGTTCTGGCGATCGGGGGAGCCGGATGGGGTGTGCGGACATG
770 -AGAACCTGACCGACGGCATTCGGGTTCCGACGATCGGGGG-GCCGG-GGGGGTGTGCGCACATG
* * * *
6535684 ATGTGCGATGGGTGCGGGTATTTGGCCCTTATATTGGCCCCCTATCTCTCGTCAAACCTC
832 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
6535744 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAG
* * * *
6535809 TATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCGAGGTTTTAGCTG
65 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
6535874 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCACGTTTGGGGCCAAAAATTC
130 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * * * * *
6535939 TTTTGAAAAAATTTAAAAAAATCTCAAACCGTAAAAACTTTCGAAGATCGTGAAAAATAGAAAAC
195 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
6536004 GAGTCGTCCTGCCATGAAACTTAACGTGAAGGCTTAAAGGAACCATTGTATGAATTTACAAGCCA
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGAACCATTGTCTGAATTTACAAGCCA
*
6536069 CAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
324 CAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* **
6536134 CACGGCTTGCGCATCCCGTCTCTCTGGCC-G-AT-GTG-GTGCCCGCCCGCCCGCCCGCTCGTTT
389 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTT
* * * * ** * * *
6536195 TGTCGTTTGGCTTAGGCATACGAAGTTCATT-TCCAGTGTAAGATTGGATCATACCGAAGGTTGT
454 CGTCGGTTGGCTTAGGCATAAGAAGTTCATTCT-CAGTCTAAGATCAGACCAGACCGAGGGTTGT
* * * ***
6536259 GGCAGCAGGATCAGCT-GCACGCAGAGAGGGACCTGAGTGATCCCC-GCTTGCGCACCCCGCCCC
518 GGCAGCAGGATC-GGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCACCCCGCCCC
** * * * * * * *
6536322 TCTGGCCAACTGAGCGCCCTCAGGTTCGTTTCGTGGGTTCACTTAAGCATACGGAGTTCATTCCC
582 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * * *
6536387 AGTCTAAGCATACGAAGTTCATTCCTAGTCTATGATCAGACCAGACCAAGGGTTGCGGCAGCACA
647 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACA
* * * ** *
6536452 TACTGGGCTTGAGCATGTGCTGGTGTCACT-TTTTTCTTTGTCGGGGCACCATTGCTGGAGCATC
711 TGCTGGGCTCGGGCATGTGCTGGTG-CTGTATTTTTCTTCGTCGGGGCACCA-T-C----GCA-C
* ** * *
6536516 GTCGAAGAACCTGACCGACGGCATTAAGGTTCCGACGATCGGGGGGCC-GGGGGGTGTACACACA
768 AT---AGAACCTGACCGACGGCATTCGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACA
** * *
6536580 TGATGTGCGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCTCTATTCCTCATCAAACCTC
830 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
6536642 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAG
* * *
6536707 TGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTA
65 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * **
6536771 AATGTTTTTGTGCATGTCAAAAAAAATAAAAGGATCACGTCTACCAAGATTGGGGCCAAAACCCC
130 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * * * * *
6536836 TTCCGAAAAAATTTTAAAAAATCTCGAAGCGCAAAAAGTTTCAAAAATCTTAAAAAATAGGAAAC
195 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * * * * *
6536901 CAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTCTGAATTTACAAGCCAC
* * * * ** *
6536966 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAGACTGACCTACCACCCTATTGATCC
325 AAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
6537031 ACGACTTGC-CATCCCGTCTCTCTGGCCGATGTAGT----GCCCGCCCGCCTGCCCGCTCG-TTC
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * * ***
6537090 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCCA
455 GTCGGTTGGCTTAGGCATAAGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* *** * * * * * **
6537155 CAGTAGGATCAACAACACGCAGAGGGTGACCCGACCGATCCCCGACTTACGCGTCCCGCCCCTCT
520 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCACCCCGCCCCTCT
* *
6537220 GGCCGGCTAAGCGCCCGCGCGCTCATTTCAT
585 GGCCGGCTGAGCGCCCGCACGCTCATTTCAT
6537251 TCCCATTCTA
Statistics
Matches: 3626, Mismatches: 516, Indels: 125
0.85 0.12 0.03
Matches are distributed among these distances:
889 4 0.00
890 678 0.19
891 407 0.11
892 324 0.09
893 9 0.00
894 113 0.03
895 77 0.02
896 99 0.03
897 182 0.05
898 149 0.04
899 3 0.00
900 3 0.00
901 230 0.06
902 154 0.04
903 16 0.00
904 433 0.12
905 627 0.17
906 117 0.03
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
TCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTCTGAATTTACAAGCCACA
AAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATAAGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
AGCAGGATCGGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCACCCCGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCACAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCACATAGAACCTGACC
GACGGCATTCGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
Found at i:6536405 original size:26 final size:26
Alignment explanation
Indices: 6536365--6536418 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
6536355 TGGGTTCACT
*
6536365 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
6536391 TAAGCATACGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
6536417 TA
1 TA
6536419 TGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:6539021 original size:26 final size:27
Alignment explanation
Indices: 6538981--6539035 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
6538971 CGTTGGTTGA
6538981 CTTAGTCATACGGAGTTCATTCCCAGT
1 CTTAGTCATACGGAGTTCATTCCCAGT
*
6539008 CTTAG-CATATGGAGTTCATTCCCAGT
1 CTTAGTCATACGGAGTTCATTCCCAGT
6539034 CT
1 CT
6539036 AAGATCGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
CTTAGTCATACGGAGTTCATTCCCAGT
Found at i:6539074 original size:891 final size:887
Alignment explanation
Indices: 6537246--6539862 Score: 3696
Period size: 891 Copynumber: 2.9 Consensus size: 887
6537236 GCGCGCTCAT
* ** * * * * * *
6537246 TTCATTCCCATTCTAAGATCAAATCAGACTGACGGTTGCGACGGCACATGCTGGGCTCGGGCATT
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTTCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
6537311 TGCTGGTGCATTATTTTTCTTCGTCGGGGTACCATCATCGGAGAACCTGACCGGCGTCATTGGGG
66 TGCTGGTGCAAT-TTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGACGGCATTGGGG
* * *** * * *
6537376 TTCCGGTGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTTGTC
130 TTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCC
* *
6537441 CTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAG
194 CTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
6537506 ATTTTACAGGTTTGCTTCCAGTAACCGTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
259 ATTTTACAGGTTT-CTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
6537571 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
323 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * ** * * *
6537636 GATCATGTCTACCACGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAACAATCCTGAACCA
388 GATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAATTTTAAAA-AATCCAGAACCA
* * *
6537701 TAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAG
452 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*** * *
6537766 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATAATTGGCATGCAAAAATATGAAG
517 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
6537831 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
582 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
6537896 GTGGTGCCCG---CCCG----CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
647 GTAGTGCCCGCCCCCCGTCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
6537954 CAGTCTAAGATGGGATCGGACCGAGGGTTGTGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCC
712 CAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCC
* * ** * * * *
6538019 GACCGATCCCTGATTTGCGCACCCTGCCCCTCTGGCAGGCTGAGCGCTCGTACGCTCGTTTCATA
776 GACCAATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATA
6538084 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGCAG
841 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGCAG
* *
6538131 TTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGT-GGCAGCACATGCTGGGCTCGGGCAT
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTT-TCGGCAGCACATGCTGGGCTCGGGCAT
* *
6538195 GTGCTGGTGCAAATTTTTTCTTCGTCGGGGCACCATCGTC-GAGAACCTGGCCGATGGCATTGGG
65 GTGCTGGTGC-AATTTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGACGGCATTGGG
* *
6538259 GTTCTGATGATCGGGGGGCCGGGGGGGTGTGCACACATGATGCATGATGGGTGCTGGTACTTGGC
129 GTTCCGATGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGC
* *
6538324 CCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAAGACCATTTGA
193 CCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
6538389 GATTTTACAGGTTTCTGCCAGTAGCCATGAAAGTGTCTGGAATAGGGGTA-A-TTTTTTCAAATG
258 GATTTTACAGGTTTCTACCAGTAGCCATTAAAGTGTCTGAAAT-GGGG-ACACTTTTTTCAAATG
* *
6538452 GTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACA
321 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
6538517 AGGATCACGTCTACCAAGTTTGGTTCAAAAACTCCTTCCAAAAAAATTTTAAAAAATGCAGAACC
386 AGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCAGAACC
* * *
6538582 ATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAG
451 ATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
6538647 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
516 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
6538712 CATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * * *
6538777 CGTAGTGCCCGCCCACCCGTCCACCCGCTCATTTTTGTCGGTTGGCTCAGGCATACGAACTTCAT
646 CGTAGTGCCCGCCC-CCCGTCCACCCGCTCA-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
6538842 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGA
709 TCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGA
6538907 CCCGACCAATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
773 CCCGACCAATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * * *
6538972 GTTGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTTAGCATATGGAG
838 ATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGCAG
*
6539022 TTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTTCGGCAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTTCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
6539087 TGCTGGTGCCGCA-TTTTTCTTCATCGGGGCACCATCGCCAGAGAACCTGACCGACAGCATTGGG
66 TGCTGGTG-C-AATTTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGACGGCATTGGG
* * *
6539151 GTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGCATGATGAGTGCTGGTACTTGGCC
129 GTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCC
*
6539216 CTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAT
194 CTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
6539281 ATTTTACAGGTTTTTACCATTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
259 ATTTTACAGGTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
6539346 ACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGG
324 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * **
6539411 ATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCC-GAAAAATTTTGAAAAAATCCCGAACCGC
389 ATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCAGAACCAT
* * * *
6539475 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCTTGAAACTTCACGTAAAGG
453 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * * *
6539540 CTTAAGGGACCCTTGTCTGAATTTACAAGCCACAAAACTGGCGTTGGCACGTAGAAATATGAAGA
518 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * *
6539605 TGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCATCTCTCTGGCCGGCG
583 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * * * *
6539670 TAGTGCACGCCCGCCCGTCCACCCACTCATTTCGTCGGTTAGCTTAGGCAGAAGGAGTTCATTCT
648 TAGTGCCCGCCC-CCCGTCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * **
6539735 CAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCATGCAGAGGGGGACCC
712 CAGTCTAAGATCGGACCGGAC-GAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCC
* * * * *
6539800 GGCCAATCCTCGGCTTGCACATCCCGCCCCTC-GGCCGGCTGAGCACCCGCACGCTCGTTTCAT
776 GACCAATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
6539863 CGGCTTAGCA
Statistics
Matches: 1541, Mismatches: 170, Indels: 38
0.88 0.10 0.02
Matches are distributed among these distances:
882 201 0.13
883 151 0.10
884 147 0.10
885 87 0.06
886 6 0.00
889 31 0.02
890 134 0.09
891 744 0.48
892 40 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTTCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCAATTTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGACGGCATTGGGGT
TCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCCCT
TATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCAGAACCATAAA
AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGCCCGCCCCCCGTCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCGGACGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCA
ATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGCAG
Found at i:6539919 original size:28 final size:28
Alignment explanation
Indices: 6539836--6539920 Score: 143
Period size: 28 Copynumber: 3.0 Consensus size: 28
6539826 CCCCTCGGCC
*
6539836 GGCTGAGCACCCGCACGCTCGTTTCATC
1 GGCTGAGCACCCGCACGCTCGTTTCATG
*
6539864 GGCTTAGCACCCGCACGCTCGTTTCATG
1 GGCTGAGCACCCGCACGCTCGTTTCATG
*
6539892 GGCTGAGCACCCGCAAGCTCGTTTCATG
1 GGCTGAGCACCCGCACGCTCGTTTCATG
6539920 G
1 G
6539921 CCGACGATCG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.15, C:0.35, G:0.27, T:0.22
Consensus pattern (28 bp):
GGCTGAGCACCCGCACGCTCGTTTCATG
Found at i:6540678 original size:26 final size:26
Alignment explanation
Indices: 6540637--6540692 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6540627 TGGGTTGACT
* *
6540637 TAAGCATACGGTGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
6540663 TAAGCATACCGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
6540689 TAAG
1 TAAG
6540693 ATCGAACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:6542425 original size:26 final size:26
Alignment explanation
Indices: 6542389--6542441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6542379 GTTGACTTAG
6542389 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
6542415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6542441 G
1 G
6542442 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6544070 original size:892 final size:891
Alignment explanation
Indices: 6541532--6545814 Score: 5199
Period size: 901 Copynumber: 4.9 Consensus size: 891
6541522 CTTAGTCATG
* * * * * *
6541532 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCACATGCTGGGATCAG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
6541597 GCATGTGTTGGTGCCGCATTTTTCTTTGCTGGGG---CA----C----CATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTC-TTACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * *
6541651 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCATATGATGTGTGATGG
130 ACCGGCGGCATTGGGGTTCCGACGATC--GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
6541716 GTGCTGGTACTTGGCCCTTATATT-GGCCCC-ATCCCTCATCAAACCTTC-AGAACTCACTCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCC
* * * ** *
6541778 CTCAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCAACAAAGTGCCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
6541843 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
6541908 GCCAACAAAAATATAAGGATCATGTCTACCAAGTTTCGGAG-CAAAACTCCTTTCG-AAAAATTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
6541971 TAAAAAATCCCAAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAATCAGTCGTATTGCCA
451 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
* * ** *
6542036 TGAAACTTCACGTGAAGGCTTAAGGGGCCACTACATGAATTTACAAGGCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
6542101 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGTGCATC
581 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
6542166 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAG
646 CCGTCTCTCTGGCCGGCGTAGT----GCCCACCCGCCCG----CTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
6542231 GCATACGGTGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAAGATTGGTA
703 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGA-TCGCA
* ** * *
6542296 GCACACAGAGGGGGACCCAGCCGATTCCCGGGTTGTGCATCCTG-CCCTTTGGCCGGCTGAGCGC
767 GCACGCAGAGGGGGACCCAGCCGATTCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
6542360 CCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
832 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * *
6542420 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCACACGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* ** *
6542485 GCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCG-CTGGAGAACCT
66 GCATGTGCTGGTGCCGCATTTTTCTTACT-GGGGCACCATCGCCGGAGCATCGTC-GGAGAACCT
* * * *
6542549 GACCGACGGCATTGGGGTTCCGGCGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
129 GACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* *
6542614 GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCC
192 GGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
6542679 CTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTAAAATCGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
6542744 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
6542809 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTCT-GGGCCAAAACACCTTCCAAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * ** *
6542873 AAGAAATC-CAGAATCGTAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
452 AAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
*
6542937 TGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * *
6543002 CACATAGAAATATGAAGATGTGACTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
6543067 CTGTCTCCCTGGCCGGTGTAGTGCCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGG
646 CCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *
6543132 AGTTCATTCCCAGTCTAAGATCAGACC-AGACCAAGTGTTGTGGCAGCAGGATCAGCAGCACGCA
711 AGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATC-GCAGCACGCA
* ** * *
6543196 GAGGGGGGCCTGGCCGA-TCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTCAGCGCCCGCAC
774 GAGGGGGACCCAGCCGATTCC-CGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
6543260 GCTCATTTCGTGGGTTGACTTA-GCAATACGGAGTTCATTCCTAGTCTAAGCATA
838 GCTCGTTTCGTGGGTTGACTTAGGC-ATACGAAGTTCATTCCCAGTCTAAGCATA
* * * *
6543314 CGGAGTTCATTGCCATTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
** * * * * *
6543379 GCATGTGCTACTACCGCATTTTTCTTCACTGGGGTACCATCACCGGAGCATCGTCGAAAAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTT-ACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * *
6543444 ACCGGTGGCATTGGGGTTCCGATGATCGGGGG-TGGGGGGTGTGCGCACATGATGTGCAATGGGT
130 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
6543508 GCTGGTACTTGGCCCTCATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
6543573 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
6543638 TTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
6543703 AACAAAAATAAAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
6543768 AAATCTCGAACCGCAAAAGGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAA
455 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
*
6543833 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
6543898 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
6543963 CTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
650 CTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * *
6544028 CATTCCCAGTCTAAGATTGGACCGAACTGGGGGTTGTGGCAGCATGATCGGCAGCACGTAGAGGG
715 CATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATC-GCAGCACGCAGAGGG
* * *
6544093 GGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGT
779 GGACCCAGCCGATTCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
6544158 TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA
844 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
* * *
6544200 ---AG---ATT----G-----GA-CTG----GACCGAGGGTTACGGCAGCACATGCTGGGGTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * *
6544245 GCATGTGCTGGTGCCGCA--TTT-TT-CT---------TCGCCGAAGCATCGTTGGATAACCTGA
66 GCATGTGCTGGTGCCGCATTTTTCTTACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * *
6544297 TCGGCGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CCGGCGGCATTGGGGTTCCGACGATC-G-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
6544362 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
6544427 TAAAGAGCATTTGAG-------A-------T-----T-----TTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
6544468 GTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** *
6544533 CAACAAAAATACAAGAATCATGTCTACCAAGTTTGGGGTAAAAACTCCTTGCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
*
6544598 AAAA--T----CC-CAAACAG---C-AAAA-C----------G---AT---TCGTCTTGCCATGA
454 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* *
6544635 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
6544700 GCAGAAATATGAAGATGTGTCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
6544765 TCTCTCTAGCCGACGTTGTGCCCGCCCGCCCGTCCGCCCCCGCTCGTTTCGTCAGTTGGATTAGG
649 TCTCTCTGGCCGGCGTAGT----G-CC-CAC--CCG--CCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
6544830 CATACGGAGTTCATTCCTAGTCTAAGATCGGGCC-AGACCGAGGGTTGTAGTAGCAGGATCGACA
704 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCG-CA
* * *
6544894 GCACGCAGAGGGGGACACGGTCGATTCCC-AGCTTGCGCATCCTGCCCCTTCTGGCCGGCTGAGC
767 GCACGCAGAGGGGGACCCAGCCGATTCCCGA-CTTGCGCATCCTGCCCC-TCTGGCCGGCTGAGC
* * * *
6544958 GCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGAAGTTCATCCCCAGTCTAAGCATA
830 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
** * * * * *
6545020 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGAAGCACATACTAGGCTTGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
6545085 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTT-ACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * *
6545150 ACCGGCGGCGTTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGG
130 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
6545215 TGCTGGTACTTGGCCCTTATATT-GGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCT
194 TGCTGGTACTTGGCCCTTATATTGGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** *
6545279 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGTAGTAGCCACTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
6545344 ACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGATTTTTTAGCTGAATTTTTTTGTGTAT
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
6545408 ACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAGAAGTCCTTCCAAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
6545473 AAAAAATCTCGAATCGTAAAAAGTTTTGAAAA-CGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
* * *
6545537 GAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACGAGTCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
6545602 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * *
6545667 CGTCTCTCTGGCCAACGTAGGGCCCACCCGCTCGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGG
647 CGTCTCTCTGGCCGGCGTAGTGCCCA--C-C-CG--C--CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
6545732 CATACAGAGTTCATTCCCA-TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
704 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG-CAG
6545796 CACGCAGAGGGGGACCCAG
768 CACGCAGAGGGGGACCCAG
6545815 TCGGAGAACC
Statistics
Matches: 2919, Mismatches: 327, Indels: 285
0.83 0.09 0.08
Matches are distributed among these distances:
803 152 0.05
806 2 0.00
807 1 0.00
808 2 0.00
809 3 0.00
811 3 0.00
812 2 0.00
813 117 0.04
814 61 0.02
816 1 0.00
819 2 0.00
820 6 0.00
821 1 0.00
823 2 0.00
824 5 0.00
825 2 0.00
826 3 0.00
829 1 0.00
830 1 0.00
831 147 0.05
835 2 0.00
836 3 0.00
840 44 0.02
841 1 0.00
842 3 0.00
843 2 0.00
845 1 0.00
848 1 0.00
852 46 0.02
853 108 0.04
854 51 0.02
855 105 0.04
860 1 0.00
861 2 0.00
863 2 0.00
864 3 0.00
866 46 0.02
867 1 0.00
870 2 0.00
871 2 0.00
872 1 0.00
876 2 0.00
877 141 0.05
879 1 0.00
880 3 0.00
883 3 0.00
884 5 0.00
886 2 0.00
887 4 0.00
888 87 0.03
890 1 0.00
891 243 0.08
892 407 0.14
893 119 0.04
894 200 0.07
895 3 0.00
897 12 0.00
898 10 0.00
899 95 0.03
900 26 0.01
901 426 0.15
902 40 0.01
904 148 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGCAGCACGCAGAGGGGG
ACCCAGCCGATTCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
Found at i:6545021 original size:26 final size:26
Alignment explanation
Indices: 6544992--6545041 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6544982 GACTTAGGCC
6544992 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAGTCTAAGCA
* *
6545018 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
6545042 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCA
Found at i:6547753 original size:871 final size:870
Alignment explanation
Indices: 6545818--6556248 Score: 10552
Period size: 871 Copynumber: 11.9 Consensus size: 870
6545808 GACCCAGTCG
* **
6545818 GAGAACCCGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGAT
* * * *
6545883 GTGCAATGGGTGCTGGTTCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
66 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
6545948 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
6546013 AATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
196 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
6546078 TTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGT-CGA
261 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGA
* *
6546142 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
325 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
6546207 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTTTATGAATTTACAAGCCATAAAAAT
390 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
6546272 GGCACTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGG
455 GGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
6546335 CTTGCGCATCCCGTCTCTCTAGTCGAG-GTAGTAC-C-CGC-CCGCCCGCCCGCCAACTCGTTTC
518 CTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTTTC
* * * * *
6546396 GTCTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAAT-GGACCAGATCGAGGGTTACG
582 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCG
* ** * * * * **
6546460 GTAGTAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCACGGCTTGCACATCCCGCCCCTC
646 GCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTC
* * * * * * *
6546525 TGGCCGGCTGAGCACCCACATGCTCCTTTCATAGGTTGACTTAGGCATACGGAGTTTATTCCCAG
711 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * *
6546590 CGTAAGATCGGACCAGACCGAGGGTTGCGGCAGCATATTCTGGGCTCGGGCATGCGCTGGCGCCG
776 TGTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *
6546655 CATTTTTCTTCGCTAGGGCACCATCGC-CG
841 CATTTTTCTTCGCCAGGGCACCATCGCACA
* ** * *
6546684 GAGAACTTGACCGACGGCATTGGGGTTTTGACGATC-GGGGGGCGGGGGGGGCTGTGCACACATA
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGG-TGTGCGCACATG
* * *
6546748 ATGTGTGATGAGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
6546813 CTCTCACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
6546878 GAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAAATT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * ** **
6546943 TTTTGAGCATGCCAACAAAAATACGAGGATCATGTTTAATAAGTTTGGGGCCAAAACTCCTTTTG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** *
6547008 AAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
6547073 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
6547138 CT-GCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGA
454 -TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
6547202 CTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCTCGCCCGCCCGCCCGCTCGTTTC
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGC-CGCCCGCCCGCCCGCTCGTTTC
* * *
6547267 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGACCGAGGGTTGCGG
582 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * **** *
6547332 TAACAGGATCGGCAGCACACAGAGGGGGACCCCATTGATCCTCGACTTGTGCATCCCGCCCCTCT
647 CAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCT
* *
6547397 GGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGT
712 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
6547462 GTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTTGGGAATGTGCTGGTGCCGT
777 GTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
*
6547527 ATTTTTCTTCACCAGGGCACCATCGC-CA
842 ATTTTTCTTCGCCAGGGCACCATCGCACA
* * * * *
6547555 GAGAACTTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGCTGTGCGCACATA
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGG-TGTGCGCACATG
* *
6547620 ATGTGCGATAGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
6547685 CTCACA-CCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
6547749 GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
6547814 TTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCA
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* **
6547879 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
6547944 GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATCTACAAGGCCATAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAA
* *
6548009 ATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
453 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
6548074 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGCTCATTTCG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTTTCG
* * * ** * *
6548139 TCAGTTGGCTTAGGGATACGGAGTTCATTCCTAGTCTAAGATTTGATCAGACTGAGGGTT-CTGG
583 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GG
* * * * * * * *
6548203 CAACAGTATCGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCAACCCGCCCCTCT
647 CAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCT
* * *
6548268 GGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GT
712 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * ** *
6548332 CTAAGATCGGACCAGACCGAGGGTTACGGCAGC-CTATGCTACGCTCGGGCATGTACTGGTGCCG
777 GTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAC-ATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * *
6548396 TATTTTTCTTCATCGGGGCACCATCATCAAAGCATCGTCG
841 CATTTTTCTTCGCCAGGGCA-C--CATC---GCA----CA
* * * * *
6548436 GAGAACCTGACCGCCGGCATTGGGGTTCCGGCAATTGGGGGGGCCGGGGGGGTGTTCGCACATGA
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGA
* *
6548501 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
6548566 TCACACCCCCTTAAAGAGCATTTGAGATTTTACCA-GTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
6548630 GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
6548695 TTCTGTGCATGTCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
6548760 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTGTCAAAAATCATGAAAAATACAAAACGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* **
6548825 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGCGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * * *
6548890 TGGCACTGGCA--CATAGAAATATGAATATGTGCCTAAACCCACCTACCACCTTTTTGACCCAAG
454 TGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * **
6548953 GCTTGCGCATCCCGTCTCTC-GAGCCGGGGTAGTACCCGTCCGCCCGCCCGCCTGCCAACTCGTT
517 GCTTGCGCATCCCGTCTCTCTG-GCCGGCGTAGTGCTCGCCCG-CCGCCCGCCCGCCCGCTCGTT
* * * *
6549017 TCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGAAT-GGACCAGATCGAGGGTTG
580 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTG
* * ** * *
6549081 TGGTAGTAGGATCGGCAGCACTCAGAGGGGGACCCGGCCGATCCGCGGCTTGTGCATCCCGCCCC
644 CGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCC
* * *
6549146 TCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGCAGTTCATTCCC
709 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
** * * * * * * *
6549211 AGTGTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATACTGGGTTTGGGCACGTGCTGGTGC
774 AGTGTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
**
6549276 CGCATTTTTCTTCGCCAGGGCACCATCGC-TG
839 CGCATTTTTCTTCGCCAGGGCACCATCGCACA
* *
6549307 GAGAACTTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGCTGTGCGCACAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGGG-TGTGCGCACAT
* * *
6549372 AATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATTCCTCATCAAACCTCGAGA
63 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
6549437 ACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
6549502 TTAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
6549567 TTTTT-TAGCATACCAACAAAAATAAAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCCTTC
258 TTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
6549631 CGAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCGAAAATCATGAAAAATAGAAAA-GAG
322 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
6549695 TCGTCTTGCCATGAAACTTTTA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
387 TCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
6549759 AAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
451 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
6549824 GACTTGCGCATCCCGTCTCTCTGGCCGGCGT-G-G-T-GCCCGCCCGCCCGCCCGCCCGCTCGTT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCG-CCGCCCGCCCGCCCGCTCGTT
* * *
6549885 TCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAGACC-GTACCGAGGGTTA
580 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTG
* * * *** *
6549948 TGCCAACCGGATCGGCAGTGGGCAGAGGGGG-CCTGGCCGATCCTCGGCTTGTGCATCCCGCCCC
644 CGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCC
* * * *
6550012 TCTGGCTGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCC
709 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * **
6550076 AGTCTAGGCATATGGAGTTCATTCCCAAACTAAGATTGGACCAGACCAAGGGGTTCCAGCAGTGC
774 AG--T--G--TA---AG---A-T-------T-GGATCGGACC-G----A-GGGTTGCGGCAGCAC
* * * *
6550141 ATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCATCAGAGCATC
812 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCA-C--CATC---GCA-C
6550206 A
870 A
6550207 TCGGAGAACCTGACCTG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
1 ---GAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCAC
* * *
6550271 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTTGA
61 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
6550336 GAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATG
126 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
6550401 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
191 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
6550466 TTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGACCAAAACTCCTT
256 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
6550531 CCAAAAAAATTTTAAAAAATCCTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGA
321 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * *
6550596 GTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGTATTT--AAGCCATAA
386 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
6550659 AAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAGCCCAGCTACCACCCTATCGATCCAC
451 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * *
6550724 GGCTTACGCATCCCATCTCTCTGGCTTGCGTAATGC-C-CAC-CCGCCCGCCCGCCCGCTCATTT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTTT
* * * * *
6550786 TGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGACCAGACCAAACCGAGGGTTGTG
581 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * * * ** * * *
6550851 GCAGCAGGATTGACAGCACACAAAGGGGGACCCGGTCGATCC-CGGCTTGCCCATCCCACCGCTT
646 GCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTC
* *
6550915 TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
711 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
6550980 TCTAAGCATGCGGAGTTCATTCCTAGTCTAAGATCGGATCAGGCCGAGGGTTGCAGCAGCCCTTA
776 --T--G--T---AAG---A-T--T-G-----GATCGG---A--CCGAGGGTTGCGGCAGCACATG
* * *
6551045 CTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCA
815 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-C--A-CA
* * *
6551105 TCGCCGGAGAACCTGACCTG-CGGCATTGAGGTTCCGACGATCGGGCGGTC-GGGGGGTGTGCGC
1 ------GAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGC
* * * * ** * *
6551168 ACATGATGTGCGATGGGTGCTGGCACTCGGCCCGTATAATATCCCCCTAACCCTCATCAAACCTT
59 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
6551233 GAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTACAAGTTTGGTGCCAGTAGCCATTAAAG
124 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
6551298 TGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
189 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
6551363 AATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCC
254 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
6551428 TTCTGAAAAAATTTAAAAAAATCCCAAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAAT
319 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * *
6551493 GGGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
384 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
6551558 AAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCC
449 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
6551623 ACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G--C-CCGCCCGCCCGCCCGCTCGT
514 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGT
* *
6551681 TTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACC-GTACTGAGGGTT
579 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTT
** * * * *** *
6551744 ATGCCAACCGGATCAGCAGTGGGCAGAGGGGG-CCTGGCCGATCCTCGGCTTGTGCATCCCGCCC
643 GCGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCC
* * *
6551808 CTCTGGCTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCC
708 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
6551872 CAGTCTAGGCATATGGAGTTCATTCCTAAACTAAGATTGGACCAGACCAAGGGGTTCCAGCAGCG
773 CAG--T--G--TA---AG---A----T----T-GGATCGGACC-G----A-GGGTTGCGGCAGCA
* * * *
6551937 CATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTTTTCGTCAGGGCACCATGTTCGGAGCAT
811 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCA---TC---GCA-
*
6552002 CTCC
869 --CA
* * *
6552006 GAAGAACCTGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCAAATGA
1 G-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGA
* * * *
6552070 TGTGTGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
6552135 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
6552200 AAATGGGGACATTTTTTTCAAATGGTTACAAAATCTTGCACGCTTCGAGTTTTTCA-CTGAATTT
195 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTT
*
6552264 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * * *
6552329 AAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGGAAATGAGTC
324 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
6552394 GTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
6552459 TGGCATAGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
454 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** *
6552524 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCG---GCCCG-CTACTCTTTTCGT
519 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * **
6552585 TGGTTGGCTTAGGCATAAGAAGTTTATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGATA
584 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* * * * * * * *
6552650 GCAGGATCGACAGCAGGCAGAGGGCGACCCGGTCGATCCCCGACTTGTGCATCCCACCCCTCTGG
649 ACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
* * * * * * * ***** *
6552715 -C--AT-A----CAG-A-GTTC-ATTCCT-AG-T--C-TA-ACAT-CGGA--TCAGAGGGAGGGT
714 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTG-
* * ** * * * ** *
6552760 TACG-TTAGCACATGCGGGGCTAGGGCATGTGCTGG-TGCCACATTTTTCTTCG-TCGAGGCACC
778 TAAGATT-G--GAT-CGGACCGAGGG--T-TGC-GGCAG-CACA---TGCTGGGCTCG-GGCA-T
* ** * ** *** * *
6552822 AT-C-GAG-GAAGCA----TCGTCGGAAAAAC-CCGATAGGCGGCA
829 GTGCTG-GTGCCGCATTTTTCTTCGCCAGGGCACC-AT-CGC-ACA
** * * * * * ** * * * **** * ** **
6552860 TTGTA-GT-TCTGAC-G-ATCGGGGGGCCG--G--GGGGTGTGCGCCCATGATGTATG-ATGGGT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCG-GGGGGGTGTGCGCA--CAT
* * ** ** * * * **** *** *
6552916 GCTG-G-TACTGGGCCCTTAT-TTTGGCTCCCTATCCCTCATCAAACCCTGAGAACTCA-C-ATC
63 GATGTGCGA-TGGGTGCTGGTACTTGGC-CCTTAT--AT--TGGCCCCCT-ATCCCTCATCAAAC
** * * *** * * * *
6552976 C-CCTGAA---AGAGCATTTGAGAT------------TTTACAGGTTTGCTGCCAATAGCCATTA
121 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
6553025 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
186 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
6553090 CTGAATTTCTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
251 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
6553155 TCATTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAAGCATGAAAAATAGAA
316 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
6553220 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGC
381 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
6553285 CATAGAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCG
446 CATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
6553349 ATCCACGGCTTGCGCATCCCGTCTCTCAGGTCGGCGTA--G-T-GCCCGCCTGCCTGCCCGCCCG
510 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCC-GCCCGCCCGCCCG
* * * * * *** * * * * *
6553410 TTCGTTTCAG-CAGTTGGATCAGACCA-A-GG-GTT-A-TGGTAG--TAGGATCGGCAGCACACA
574 CTCGTTTC-GTCGGTTGGCTTAG-GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACC
**** * * * ** ** * * ** *
6553467 GAGGCAAAC-CCGAC-CGATC--C--CTGGC--TTGCGCATCCCGTTGCTC--TGGTCGG-TTGA
636 GAGGGTTGCGGCAACAGGATCGGCAGCACGCAGAGGGGGA-CCCG--GC-CGATCCTCGGCTTGT
* ** ** * **** * * * *** * * *
6553521 GCA-CCTGCAAGCTCGTTTCATGGCTTGA-CTTAGGCA--TTCAGAGTTCATTCCTAGTC-TAAG
697 GCATCCCGC-CCCTC-TGGC-CGGC-TGAGCGCCCGCACGCTC-G-TTTCGTGGGTTGACTTAGG
* * * * * * ** *
6553581 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAATGGTTACGATAGCACATGCTTGGC
756 CATACGGAGTTCATTCCCAGTGTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
6553646 TCGGGCATGTGTTAGTGCCGCATTATTCTTCACCGGGGCACCATCGCCGGAGCA
821 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-C--A-CA
* * * *
6553700 TCGCCGAAAAACATGACCGACGGCATTGGGGTTCTGACGAT-GGGGGGGCTGGGGGGTGTGCGCA
1 -----G-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCA
6553764 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-
60 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
6553828 AGGAACTCACATCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAG
125 A-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
6553893 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTG
189 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * *
6553958 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAGGATTGGGGCTAAAAATCC
254 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** *
6554023 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
319 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * * *
6554088 GAGTTGTCTTGCCATCAAACTTCACGTGAAGCCATAAGGAACCATTGTATGAATTTACAAGCCAT
384 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * ** *
6554153 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACTCACCTACCACCCTATTAATGC
449 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
6554218 ACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTG--C-CTC-CTCGCTCG
514 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCC-GCCCGCCCGCCCGCTCG
* * * * * *
6554279 TTTCATCGGTCGGCTTAGGCATACGGATTTCATTCCCAGTCTAAAATCAGATCAGACCAAGGGTT
578 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * ** * * * *
6554344 GCAGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCC
643 GCGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCC
* ** * * * *
6554409 CTTTGGCCGAATAAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGAATACAGAGTTCATTCC
708 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * * * * * ** *
6554474 CAGTCTAAGATCAGACCTGATCAAGGGTTACGATAGCACATACTGGGCTCGGGCATGTGCTGGTG
773 CAGTGTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
6554539 CCGCATTTCTCTTCACCGGGGCACCATCGTCGGAGCA
838 CCGCATTTTTCTTCGCCAGGGCACCATCG-C--A-CA
* * * *
6554576 TCGCCGGAGAATCTGACCGACAGCATTGGGGTTCCGGCGAT--GGGGGGCCGGGGGGTGTGCGCA
1 ------GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCA
* *
6554639 CATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
60 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
6554704 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCAATTAAAGT
125 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
6554769 GTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
190 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
6554834 ATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCTAAAACTCC
255 ATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
6554899 TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
319 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
6554964 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTT
384 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * *
6555029 AAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCTACCTACCACCTTATCGATCC
449 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
6555094 ACGGCTTGCGCAACCCGTCTCTCTGGCCGGCATA--G-T-G--C-CTGCCCGCCCGCCCGTTCGT
514 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGT
* * * * *
6555152 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCGGACC-A-AGTTG
579 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * ** * * * **
6555215 CAGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCC
644 CGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCC
* * *** * *
6555280 CCCGGCCAAATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGAATACGGAGTTCATTCCC
709 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
6555345 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
774 AG--T--G--TA---AG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGCAGCACA
* * * ** * *
6555410 TGCTGGGTTCGAGCATGTGCTGGTACCGTGTTTTTTTTTCGCCGGGGCACCATCGCCGGAGCATT
813 TGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGCCAGGGCACCATCG-C--A-C---
6555475 A
870 A
* * * * *
6555476 CCGAAGAACCTGACCGACGGCCTTCGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGTACAT
1 --G-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACAT
* * * *
6555541 GATGTGTGATGGGTGCTGGTATTTGGCCCTTGTATTGGCCCCCTATCCCTCATCGAACCTCGAGA
63 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
6555606 A-TGCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGT
128 ACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
6555670 CTCG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
192 CT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
6555734 TTTTTTTATGCATGCCAACAAAAATTCAA-GATCATGTCTACCAAGTTTGGGACCAAAAATCCTT
256 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** *
6555798 -CGAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
321 CCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
6555862 AGTCGTCTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
385 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
6555927 AAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
450 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
6555992 CGACTTGTGCATCCCATCTCTCTGGCCGGCGTA--G-T--------GCCCGCCCACCCGTTCGTT
515 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTT
* * * * * *
6556046 CCGTCGGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGT
580 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * * * * * *
6556110 GACAGCAGGATTGGCAACATGCAGAGGGGGACCTGGCCAATCCCCAGCTTGCGCATCCCGCCCCT
645 GGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCT
* * * *
6556175 CTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCA
710 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
6556240 GTCTAAGAT
775 GTGTAAGAT
6556249 CTTGAAAAAT
Statistics
Matches: 8030, Mismatches: 1184, Indels: 686
0.81 0.12 0.07
Matches are distributed among these distances:
822 5 0.00
823 13 0.00
824 8 0.00
825 1 0.00
826 2 0.00
828 4 0.00
829 9 0.00
830 17 0.00
831 5 0.00
832 3 0.00
833 18 0.00
834 375 0.05
835 17 0.00
836 12 0.00
837 4 0.00
838 9 0.00
839 3 0.00
840 11 0.00
841 5 0.00
842 4 0.00
843 4 0.00
844 6 0.00
846 19 0.00
847 25 0.00
848 14 0.00
849 18 0.00
850 17 0.00
851 13 0.00
852 24 0.00
853 21 0.00
854 1 0.00
856 2 0.00
858 1 0.00
859 3 0.00
860 3 0.00
861 8 0.00
862 5 0.00
863 4 0.00
864 4 0.00
865 406 0.05
866 133 0.02
867 525 0.07
868 33 0.00
869 19 0.00
870 212 0.03
871 813 0.10
872 415 0.05
873 309 0.04
874 10 0.00
875 233 0.03
876 398 0.05
877 19 0.00
878 11 0.00
879 7 0.00
880 174 0.02
881 504 0.06
882 81 0.01
883 2 0.00
884 5 0.00
885 4 0.00
886 9 0.00
888 3 0.00
889 1 0.00
890 6 0.00
891 6 0.00
892 96 0.01
893 31 0.00
894 111 0.01
895 56 0.01
896 726 0.09
897 328 0.04
898 24 0.00
899 581 0.07
900 203 0.03
901 665 0.08
902 107 0.01
903 42 0.01
904 1 0.00
905 1 0.00
906 1 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAAC
AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
GATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGCCAGGGCACCATCGCACA
Found at i:6552151 original size:896 final size:892
Alignment explanation
Indices: 6545815--6552715 Score: 8091
Period size: 896 Copynumber: 7.8 Consensus size: 892
6545805 GGGGACCCAG
* *
6545815 TCGGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAT
1 TCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACAT
* * *
6545880 GATGTGCAATGGGTGCTGGTTCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
6545945 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
6546010 TGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
194 TAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
6546075 TTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGT-
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TC
* *
6546139 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
323 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
6546204 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTTTATGAATTTACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** *
6546269 AATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACG
453 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
6546334 GCTTGCGCATCCCGTCTCTCTAGTCGAG-GTAGTACCCGCCCGCCCGCCCGCCAACTCGTTTCGT
518 GCTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCGT
* * * *
6546398 CTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAAT-GGACCAGA-TCGAGGGTTACGG
578 C-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACC-GACT-GAGGGTTATGC
* ** * * * * **
6546461 TAGTAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCACGGCTTGCACATCCCGCCCCTCT
639 CAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCT
* * * *
6546526 GGCCGGCTGAGC-ACC-CACA-T-G---C------T-CCTT--TCATA-G-GTTGA----C--T-
704 GGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTC
* * * * * * ** *
6546566 TAGGCATACGGAGTTTATTCC-CAGCGTAAGATCGGACCAGACCGAGGGTTGCGGCAGCATATTC
769 TAGGCATACGGAGTTCATTCCTAAAC-TAAGATCGGACCAGACCAAGGGTTCCAGCAGCGCATGC
* * *
6546630 TGGGCTCGGGCATGCGCTGGCGCCGCATTTTTCTTCG-CTAGGGCACCA--TC---G---C
833 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCTCAGAGCATC
* ** * *
6546682 -CGGAGAACTTGACCGACGGCATTGGGGTTTTGACGATCGGGGGGCGGGGGGGGCTGTGCACACA
1 TCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGG-TGTGCGCACA
* * * * *
6546746 TAATGTGTGATGAGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
* * *
6546811 AACTCTCACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
6546876 CTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAAA
193 CTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * ** *
6546941 TTTTTTGAGCATGCCAACAAAAATACGAGGATCATGTTTAATAAGTTTGGGGCCAAAACTCCTTT
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** *
6547006 TGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
323 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
6547071 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
6547136 AACT-GCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
453 AA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
6547200 GACTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCTCGCCCGCCCGCCCGCTCGTT
517 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G--C-C-CGCCCGCCCGCCCGCTCGTT
* * * **
6547265 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGACCGAGGGTTGC
574 TCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTAT
** * **** *
6547330 GGTAACAGGATCGGCAGCACACAGAGGGGGACCCCATTGATCCTCGACTTGTGCATCCCGCCCCT
637 GCCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCT
* * * *
6547395 CTGGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCA
702 CTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCA
* * * *
6547460 G--T--G--TA---AG---A----T----T-GGATCGGACC-G----AGGGTTGCGGCAGCACAT
766 GTCTAGGCATACGGAGTTCATTCCTAAACTAAGATCGGACCAGACCAAGGGTTCCAGCAGCGCAT
* * * * ** *
6547499 GTTGGGCTTGGGAATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCA--TC---G---C
831 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCAGAGCATC
* * * *
6547553 -CAGAGAACTTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGCTGTGCGCAC
1 TCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGG-C-CGGGGGG-TGTGCGCAC
* * * *
6547617 ATAATGTGCGATAGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* *
6547682 GAACTCACA-CCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTG
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
6547746 TCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAA
192 TCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
6547811 TTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTT
257 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * **
6547876 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGA
322 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
6547941 GTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATCTACAAGGCCATA
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATA
*
6548006 AAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
451 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
6548071 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGCTCATT
516 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCGCCCGCCCGCTCG----TT
* * ** * *
6548136 TCGTCAGTTGGCTTAGGGATACGGAGTTCATTCCTAGTCTAAGATTTGATCAGACTGAGGGTTCT
574 TCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACTGAGGGTTAT
* * * * * * * * *
6548201 GGCAACAGTATCGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCAACCCGCCCCT
637 GCCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCT
* ** * *
6548266 CTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACG-G---------AG
702 CTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAG
* * *
6548321 --T-----T-C--A-TTC---CCGT---CTAAGATCGGACCAGACCGAGGGTTACGGCAGC-CTA
767 TCTAGGCATACGGAGTTCATTCC-TAAACTAAGATCGGACCAGACCAAGGGTTCCAGCAGCGC-A
** * * * *
6548368 TGCTACGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCAAAGCATC
830 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCAGAGCATC
* * * *
6548432 GTCGGAGAACCTGACCGCCGGCATTGGGGTTCCGGCAATTGGGGGGGCCGGGGGGGTGTTCGCAC
1 -TCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGA-TCGGGGGGCC-GGGGGGTGTGCGCAC
*
6548497 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
6548562 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCA-GTTTGCTGCCAGTAGCCATTAAAGT
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
6548626 GTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
191 GTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
6548691 ATTTTTCTGTGCATGTCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
256 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
6548756 TTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTGTCAAAAATCATGAAAAATACAAAACG
321 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* **
6548821 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGCGAATTTACAAGCCATA
386 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *** * * * * *
6548886 AAAATGGCACTGGCACATAGAAATATGAATATGTGCCTAAACCCACCTACCACCTTTTTGACCCA
451 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
6548951 AGGCTTGCGCATCCCGTCTCTC-GAGCCGGGGTAGTACCCGTCCGCCCGCCCGCCTGCCAACTCG
516 CGGCTTGCGCATCCCGTCTCTCTG-GCCGGCGTAGT----GCCCGCCCGCCCG-C--CC-GCTCG
* *
6549015 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGAAT-GGACCAGA-TCGAGGG
572 TTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACC-GACT-GAGGG
* ** ** * *
6549078 TTGTGGTAGTAGGATCGGCAGCACTCAGAGGGGGACCCGGCCGATCCGCGGCTTGTGCATCCCGC
633 TTATGCCAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGC
* * * *
6549143 CCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGCAGTTCATT
698 CCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG-AGTTCATT
* ***
6549208 CCCAG--T--G--TA---AG---A----T---C----A---GACCGGACCAAGGGTTGTGGCAGC
762 CCCAGTCTAGGCATACGGAGTTCATTCCTAAACTAAGATCGGACCAGACCAAGGGTTCCAGCAGC
* * * * * * *
6549247 ACATACTGGGTTTGGGCACGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCA--TC---G---
827 GCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCAGAGCAT
6549304 C
892 C
* * *
6549305 T-GGAGAACTTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGCTGTGCGCA
1 TCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGG-C-CGGGGGG-TGTGCGCA
* * * *
6549369 CATAATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATTCCTCATCAAACCTCG
61 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* *
6549434 AGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
126 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
6549499 GTCTTAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
191 GTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
6549564 ATTTTTTT-TAGCATACCAACAAAAATAAAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCC
256 ATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
6549628 TTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCGAAAATCATGAAAAATAGAAAA-
320 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
6549692 GAGTCGTCTTGCCATGAAACTTTTA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
385 GAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
6549756 TAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
449 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
6549821 CACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
514 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTT
* * *
6549886 CGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAGACCGTACCGAGGGTTATGC
575 CGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTATGC
* *** *
6549951 CAACCGGATCGGCAGTGGGCAGAGGGGG-CCTGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCT
639 CAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCT
* *
6550015 GGCTGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTC
704 GGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTC
* * * *
6550080 TAGGCATATGGAGTTCATTCCCAAACTAAGATTGGACCAGACCAAGGGGTTCCAGCAGTGCATGC
769 TAGGCATACGGAGTTCATTCCTAAACTAAGATCGGACCAGACCAA-GGGTTCCAGCAGCGCATGC
* * **
6550145 TGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCATCAGAGCATC
833 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCAGAGCATC
6550206 ATCGGAGAACCTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
1 -TCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCAC
* *
6550271 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTTGA
62 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* *
6550336 GAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATG
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
6550401 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
192 TCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
6550466 TTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGACCAAAACTCCTT
257 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
6550531 CCAAAAAAATTTTAAAAAATCCTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGA
322 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * *
6550596 GTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGTATTT--AAGCCATAA
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
6550659 AAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAGCCCAGCTACCACCCTATCGATCCAC
452 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * *
6550724 GGCTTACGCATCCCATCTCTCTGGCTTGCGTAATGCCCACCCGCCCGCCCGCCCGCTCATTTTGT
517 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * *
6550789 CGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGACCAGACCAAACCGAGGGTTGTGGCA
578 C-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTATGCCA
* * * * * * ** * * *
6550854 GCAGGATTGACAGCACACAAAGGGGGACCCGGTCGATCC-CGGCTTGCCCATCCCACCGCTTTGG
641 ACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
* * *
6550918 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
706 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCT
* * ** * * * * * * *
6550983 AAGCATGCGGAGTTCATTCCTAGTCTAAGATCGGATCAGGCCGAGGGTTGCAGCAGCCCTTACTG
770 AGGCATACGGAGTTCATTCCTAAACTAAGATCGGACCAGACCAAGGGTTCCAGCAGCGCATGCTG
* *
6551048 GGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC
835 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCAGAGCATC
* * * *
6551107 GCCGGAGAACCTGACCTGCGGCATTGAGGTTCCGACGATCGGGCGGTCGGGGGGTGTGCGCACAT
1 -TCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
* * * * ** *
6551172 GATGTGCGATGGGTGCTGGCACTCGGCCCGTATAATATCCCCCTAACCCTCATCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * * *
6551237 ACTCACACCCCTTTAAAGAGCATTTCAGATTTTACAAGTTTGGTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
6551302 TAAAATGGGGACAATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
194 TAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
6551367 TTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCT
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
6551432 GAAAAAATTTAAAAAAATCCCAAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGGGT
324 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
6551497 CATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
6551562 ATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGA
454 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
6551627 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGG
519 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGG
* *
6551692 CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGTACTGAGGGTTATGCCAACCGGAT
584 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTATGCCAACAGGAT
* *** * *
6551757 CAGCAGTGGGCAGAGGGGG-CCTGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTG
648 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTG
*
6551821 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAGGCATAT
713 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAGGCATAC
* *
6551886 GGAGTTCATTCCTAAACTAAGATTGGACCAGACCAAGGGGTTCCAGCAGCGCATGCTGGGCTCGA
778 GGAGTTCATTCCTAAACTAAGATCGGACCAGACCAA-GGGTTCCAGCAGCGCATGCTGGGCTCGG
* * * * *
6551951 GCATGTGCTGGTGTCGCATTTTTTTTCGTCAGGGCACCATGTTCGGAGCATC
842 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-CTCAGAGCATC
* * *
6552003 TCCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAAAT
1 T-CGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
* * * **
6552068 GATGTGTGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
6552133 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
6552198 TAAAATGGGGACATTTTTTTCAAATGGTTACAAAATCTTGCACGCTTCGAGTTTTTCA-CTGAAT
194 TAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAAT
*
6552262 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTC
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * * * *
6552327 CGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGGAAATGAG
323 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
6552392 TCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
6552457 AATGGCATAGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACG
453 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
6552522 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGGCCCGCTACTCTTTTCGTTG
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG---CTCGTTTCG-TC
* * * * *
6552587 GTTGGCTTAGGCATAAGAAGTTTATTCCTAGTCTAAGATCAGACCAGACTGAGGG-T-TGCGATA
579 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTATGCCA-A
* * * * * * *
6552650 GCAGGATCGACAGCAGGCAGAGGGCGACCCGGTCGATCCCCGACTTGTGCATCCCACCCCTCTGG
642 -CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
6552715 C
706 C
6552716 ATACAGAGTT
Statistics
Matches: 5219, Mismatches: 622, Indels: 352
0.84 0.10 0.06
Matches are distributed among these distances:
859 2 0.00
860 3 0.00
863 1 0.00
864 3 0.00
865 30 0.01
866 125 0.02
867 533 0.10
868 14 0.00
869 7 0.00
870 62 0.01
871 698 0.13
872 357 0.07
873 312 0.06
874 4 0.00
875 16 0.00
876 11 0.00
877 2 0.00
878 1 0.00
879 4 0.00
880 173 0.03
881 476 0.09
882 74 0.01
883 2 0.00
884 8 0.00
885 9 0.00
887 4 0.00
888 3 0.00
889 3 0.00
890 4 0.00
891 12 0.00
892 57 0.01
893 3 0.00
894 1 0.00
895 66 0.01
896 715 0.14
897 26 0.00
898 5 0.00
899 363 0.07
900 195 0.04
901 676 0.13
902 118 0.02
903 40 0.01
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTATGCCAACAGGATCGG
CAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAGGCATACGGA
GTTCATTCCTAAACTAAGATCGGACCAGACCAAGGGTTCCAGCAGCGCATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCAGAGCATC
Found at i:6556663 original size:26 final size:26
Alignment explanation
Indices: 6556633--6556685 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6556623 GTTAACTTAG
6556633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6556659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6556685 G
1 G
6556686 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6557573 original size:26 final size:26
Alignment explanation
Indices: 6557534--6557586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6557524 GTTAACTTAG
*
6557534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
6557560 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
6557586 G
1 G
6557587 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:6558131 original size:903 final size:898
Alignment explanation
Indices: 6556251--6558572 Score: 3275
Period size: 901 Copynumber: 2.6 Consensus size: 898
6556241 TCTAAGATCT
* * * *
6556251 TGAAAAATAGAATACGAGTCGTCTTTCCGTGAAACTGCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
6556316 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
6556381 CCGCCCTATCAATCCATGGCTTGCGCGTCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCGTCTGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGC
* * * * * * *
6556446 CGCCAGCTCATTTCGTCAGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCTAAGATTGGACCAG
195 CACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAG
* * * *
6556511 ACCGAGGGTTATGGTAGCAGGAT-TGACAGCACACAGAAAGGGACCCGGTCGATCCCCGGCTTGC
260 ACCGAGGGTTATGGTAGCAGGATCTGACAGCACGCAG-AGGGGACCCGGTCGATCCCCGACTTAC
* * * * *
6556575 GCATCCTGCCCCTCTAGCTGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTAACTTAGGCATACG
324 GCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACG
* * *
6556640 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGT
388 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC-GAGGGT
* * **
6556705 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
452 TACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* ** *
6556770 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGACCAGGGGG
517 GTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGACCAGGGGG
*
6556835 TGTACGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATC
582 TGTACGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
6556900 AAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATTGGC
647 AAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTACCAATAGCC
* * *
6556965 ATTGAATTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTT
712 ATTAAAGTCTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTT
* * *
6557030 TTAGTTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCA
777 TTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** *
6557095 AAACACCTTCCGAAAAAATTTTAAAAAATCCTAAACCACACAAAGTTTTGAACATCA
842 AAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCACACAAAGTTTCAAAAATCA
* *
6557152 -GCAAAAATAGAAAACGATTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
1 TG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
6557216 TGAATTTACAAGCCAGAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAAA-CCACCT
65 TGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCT
* *
6557280 ACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTG
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTG
*
6557345 CCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT
194 -CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT
* * * * *
6557410 AGACTGAGGGTTACGATAGCAGGATCTG-CAGCACGTAGAGGTGGACCCGGCCGATCCCCGACTT
258 AGACCGAGGGTTATGGTAGCAGGATCTGACAGCACGCAGAGG-GGACCCGGTCGATCCCCGACTT
*
6557474 ACGCATCCCGCCCATCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATA
322 ACGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATA
*
6557539 CGGAGTTCATTCCCAGTCTAAGCATATGGAATTCATTCCCAGTCTAAGATCGAACCGGATCGAGG
386 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CGAGG
* *
6557604 GTTACGGTAGCACATCCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
450 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
* * * * *
6557669 TCGTCGGAGCATCACCGGGGAACCTGACCGATAGCATTGGGGTTCC-AGCGATCGGGGGGCCGGG
515 TCGTCGGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGA-CGATCGGGGGACC-AG
* * *
6557733 GGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCC
578 GGG-GTGTACGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
6557798 TCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTGCAGGTTTCCTGCCAG
642 TCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTACCAA
*
6557863 TAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
707 TAGCCATTAAAGTCTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
6557928 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
772 ACTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
6557993 GGCCAAAACACCTTCTGAAAAAATTTTAAAAAATCCCGAACCGC-CAAAAGTTTCAAAAATCA
837 GGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAC-AAAGTTTCAAAAATCA
*
6558055 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
6558120 GAGTTTACAAGCCTTAAAAATGGCATTGGCATGTAA-AAAGATGAAGTTGTGCCTAAACCCACCT
66 GAATTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
6558184 ACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTAGCCGGCATAGTGCCCGCCCG-T--
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGC
* * * * **
6558246 CAGCCCGCTCGTTTCATCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAGA-TC
195 CA-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-
* * * * * * * *
6558310 AGACCAATGGTTGTGGCAGCAGGATC-GACAGCATGCAGAGGGGGACCTGGTCGATCCTCGATTT
258 AGACCGAGGGTTATGGTAGCAGGATCTGACAGCACGCAGA-GGGGACCCGGTCGATCCCCGACTT
* * * *** * * *
6558374 TCGCATTCGGCCCCTCTGGCCAAATGAGAGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATA
322 ACGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATA
* * *
6558439 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGG
386 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CGAGG
6558504 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CTGGGGCACC
450 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACC
6558568 ATCGT
514 ATCGT
6558573 AGAGCCTATC
Statistics
Matches: 1263, Mismatches: 140, Indels: 37
0.88 0.10 0.03
Matches are distributed among these distances:
899 5 0.00
900 344 0.27
901 444 0.35
902 10 0.01
903 395 0.31
904 65 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCC
ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGA
CCGAGGGTTATGGTAGCAGGATCTGACAGCACGCAGAGGGGACCCGGTCGATCCCCGACTTACGC
ATCCCGCCCCTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACGAGGGTTACG
GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCG
GAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGACCAGGGGGTGTA
CGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTACCAATAGCCATTA
AAGTCTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAG
CTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
ACCTTCCGAAAAAATTTTAAAAAATCCCAAACCACACAAAGTTTCAAAAATCA
Found at i:6558470 original size:26 final size:26
Alignment explanation
Indices: 6558434--6558486 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6558424 GTTGACCTAG
6558434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6558460 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6558486 G
1 G
6558487 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6558652 original size:26 final size:26
Alignment explanation
Indices: 6558615--6558666 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
6558605 GTTGGCTTAG
*
6558615 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
* *
6558641 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
6558667 AATGGCATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:6564022 original size:167 final size:167
Alignment explanation
Indices: 6563567--6564028 Score: 487
Period size: 167 Copynumber: 2.8 Consensus size: 167
6563557 TGTGCTGCTG
* * * * * * * *
6563567 CAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGACTAAGTCAACCCACGAA
1 CAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
6563632 ACGAGAGTGCGGGC-GCT---CA--A--CCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGG
66 ACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA
* * * * * *
6563689 CCGGGTCCCTCTCTGCGTGGTGCCGATCCTGCTACTG
131 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACCACTA
* * *
6563726 CAACCCTTGGTCTGATCTAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
6563791 ACGAGCGGGCGGGCGGGTGGGCACTATGTCGGCCAAAGGGGC-AGGATGCACAAGTCGGGGATCG
66 ACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCG
*
6563855 ATCGGGTCCCCCTTTGCGTGCTGCCGATCCTACCA-TCA
130 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACCACT-A
* * * *
6563893 CAACCCTCGATCCGATTTGATCTTAGATTTG-GAATGAACTCCGTATGCCTAAGCCAACCGATGA
1 CAACCCTCGATCCGATCTAATCTTAGA-CTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
6563957 AACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCG
*
6564022 ATAGGGT
130 ATCGGGT
6564029 GGTAGGTGGG
Statistics
Matches: 247, Mismatches: 44, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
159 66 0.27
160 2 0.01
163 2 0.01
165 1 0.00
166 1 0.00
167 172 0.70
168 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (167 bp):
CAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACCACTA
Found at i:6564653 original size:26 final size:26
Alignment explanation
Indices: 6564617--6564672 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6564607 CCGGTTCGAT
*
6564617 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6564643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6564669 CTTA
1 CTTA
6564673 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6566411 original size:26 final size:26
Alignment explanation
Indices: 6566375--6566426 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6566365 CCGATCCGAT
6566375 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
6566401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
6566427 ACTAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:6567162 original size:865 final size:871
Alignment explanation
Indices: 6563747--6576664 Score: 13618
Period size: 890 Copynumber: 14.6 Consensus size: 871
6563737 CTGATCTAAT
* * * *
6563747 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC------G
* * * * * * * *
6563812 CACTATGTCGGCCAAAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCTTTGCGTGCT
60 CTC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* *** * * * * *
6563877 GCCGATCCTACCATCACAACCCTCGATCCGATTTGATCTTAGATTTGGAATGAACTCCGTATGCC
123 GCCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
6563942 TAAGCCAACCGATGAAACGAGCGGGCGG--GCGGGTGGGCACTACGCCGGCCAGAGAGACGAGAT
188 TAAGCCAACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
6564005 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCA
253 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* ** *
6564070 ATGCCATTTTTACGGCTCCTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
318 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
6564135 CAAGGCGGCCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAA
383 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT-AAA
* * * * *
6564200 ATTTTTT-GGAAGGAGTTTTGGCCCCACACTTGCTAGATGTGATCCTTGTATTTTTTTTGGCATG
447 ATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
6564264 CACAAAAAAATCCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
512 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
6564329 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGA
577 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
6564394 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
642 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
6564459 CGCACATCATGTGCACACA-CCCCCCGGCCCCCGCGATCACCGAAACCCCAATGCCG-CTGGTCA
707 CGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCATCGGAACCCCAATGCCGTC-GGTCA
* * *
6564522 GGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
770 GGTTCTCTGGCGATGGTGCCCCGACGAAGAAAAAT---G-A-CAG--CA---CC-AG--CA-CA-
* * *
6564587 GTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATG
820 -TG-T--CGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
6564643 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** *
6564708 CGGCCAAAGGGACGGGATGCGCAAGCCAGGGATAGATCGGGTCCCCCTCTGTGTGCTATCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * * *
6564773 TGCTACTGA-AACCCTTGGTCCGATCTGATCTTAGATTGGGAACGAACTCTGTATGCCTAAGCCA
131 TGCTGC-CACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** ** * * * * * * *
6564837 ATTGACGAATCGA--GTG-GG-C--GGGCAGGCACTATGCCAGCCAGAGAGACGGGAGGAGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* **
6564896 CCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
6564961 TTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
6565026 ACTCGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCC
390 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
6565091 AGAAGGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAC
455 GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
6565156 AATTCAGCCAAAAACTCGAAGTGTATAAGATTTTGTAATCATTTGAAAAAGGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
6565221 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
6565286 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** * *
6565351 CTGTGCGCACACCCTACCCGG-CTCCCGTTATCGCCGGAACCTCAATGCCGCCGGTCAGGTTCTC
715 ATGTGCGCACACCC-CCCCGGCCCCCCG--ATCATCGGAACCCCAATGCCGTCGGTCAGG-T-TC
6565415 TGGCGATGCTATGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATTCTCGAGCCTA
775 T--C--TG----G-CGATGGTGCCCCGACGAAGAAAAA--T-G-A-CAG--CA--C-C-AG-C-A
* * * * * *
6565480 GTATGTGCTATAGCAACCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCATATG
818 -CATGT-C----GAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
6565540 CTTAGACTATGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *
6565605 CGGCCAGAAGGGCAGGATATGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * * *
6565670 TGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACTGAGAATGAACTCCTTATGCCTAAGCTAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
6565735 CCGATGAAACGAGCGGGCGGAC--GGGCGTGCACTACGCCGGCCAGAGAGACGGGACGCGCAAGT
196 CCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
6565798 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
6565863 TTTGTGGCTTGTAAATTCAGACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
6565928 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
391 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
6565993 GAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAA
456 GAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
6566058 ATTTAGCTAAAAACTTGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
521 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
6566123 ACACCTTAATGGCTAATGGCAG-AAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTT
586 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * ***
6566187 CTCAAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGAACCAGCACCCATCATGCATCA
651 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
6566252 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCTTCGGTTAGGTTCTCTGGC
716 TGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGC
* *
6566317 GATGGTGCCCCGACGAAGAAAAAT-AC-G-A-CA-C-C-TGTCGAAATCCTCGGTCCGATCCGAT
781 GATGGTGCCCCGACGAAGAAAAATGACAGCACCAGCACATGTCGAAACCCTCGGTCCGGTCCGAT
*
6566375 CTTAGACTGGGAATGAACTCAGTATG
846 CTTAGACTGGGAATGAACTCCGTATG
* * * *
6566401 CTTAGACTGGGAATGAACTCCGTATGACTAAGTTAACCCACGAAACGAGCGAGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
6566466 CGGCCAAAGGGGCGGGGTGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
6566531 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTGAGCAAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
6566596 CCGACAAAATGAGCGGGCGGACGGGTGGGTGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAA
196 CCGATAAAACGAGCGGGCGGAC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
6566661 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAGTGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
6566726 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
6566791 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
6566856 TGGAAGGAGTTTTTGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAA
454 CGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * **
6566921 CAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
6566986 AGACACTTTAATGGCTACTGGCAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ***
6567050 TTCTCAAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGTCAAGTACCAGCACCCATCATGCAT
649 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * * *
6567115 CATGTGGGCACACCCCTTCGGCCCCCCGAACATCAGAACCACAATGCCATCTGTCAGGTTCTC-G
714 CATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
** * * *
6567179 GTAATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCTTTTGCTGCCA
779 GCGATGGTGCCCCGACGAAGAAAAAT---G-A-CAG--CA---CC-AG--CA-C--ATG-T-CGA
* * ** *
6567244 CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACAGCTTATG
826 -AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
6567291 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *** ** *
6567356 CGGCCAGAGTGGTGGGGTGTACAAATTGGGGATCGGTCGGGTCCCTTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
6567421 TGCTACCACAACCCTCGTTC-GAAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCC
131 TGCTGCCACAACCCTCGATCTG-GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
6567484 AACCGATAAAACGAGCGGGCGGACGGGCGAGCAGGCACTACGCTGGCCAGAGAGACGGGATGTGC
194 AACCGATAAAACGAGCGGGCGGACGGG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** *
6567549 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGT
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
6567614 CATTTTTATGGCTTCTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
6567679 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTCTGTGGTTCGAGG-TTTTTTAAAATTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTT
* * * *
6567743 TTTCAGAGGGA-TTTTCGGACCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTAGCATGCAC
451 TTTCGGAAGGAGTTTT-GGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
6567807 AAAAAATTTCAGCTAAAAACTTGAAGTGTACATGATTTTGTGACCATTTGAAAAAACTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
6567872 TTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
6567937 TGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCAATCGC
645 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
6568002 ACATCATGTGCGCACACCGCCCCCCCCGGCCCTCCCAATCACCGGAAACCCAATGCCG-CGGGTC
710 ACATCATGTGCGCACA----CCCCCCCGGCCC-CCCGATCATCGGAACCCCAATGCCGTC-GGTC
* * * *
6568066 AGATTGTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAACTGCGGCACCAACACATGCC
769 AG---GT-------T-CTCTGGCGATGGTGCCCCGACGAAGAAAAAT---G-A-C-A-GCA---C
* * *
6568131 CGAGCCCAGCTTGTGCTATCGAAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
813 C-AG--CA-C--ATG---TCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
6568196 ATG
869 ATG
* *
6568199 CTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
6568264 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *** * * * * * *
6568329 TGCTACTGTAACCTTCGGT-TCAGTCCGATCTTAGGCTGGGAATGAACTCCGTATGACTAAGCCA
131 TGCTGCCACAACCCTCGATCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** **
6568393 ACCGACAAAATGAGCGGGCGG--GCGATCGGGCACTACGCCGGCCAGAGAGACACGATGCGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
6568456 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
6568521 TTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
6568586 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
390 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
6568651 GGAAGGAGTTTTTGAACCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCGTGCACAAAAC
455 GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * **
6568716 AATTTAGCT-AAAACGTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTC
520 AATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
6568780 AGACACTTTAATGGCTAATGGCAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ***
6568844 TTCTCAAGGTTTGATGAGGGATAGGGGGCCATTATAAGGTCCAAGTACCAGCACCCATCATGCAT
649 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
6568909 CATGTGTGCACACCCCCCCGGCCCCCCGATCATCAGAACCCCAATGCCATCGGTCAGGTTCTC-G
714 CATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
* *
6568973 ACGATGGTGCCCCGACGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
779 GCGATGGTGCCCCGACGAAGAAAAAT--G--A-CAG--CA---CC-AG--CA-CA-----TGTCG
* * ** *
6569038 TAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGCATG
825 AAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
6569085 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * **
6569150 CGGCCAGATGGGCGGGACGTGCAAGCCGAGGATCGACCGGATCACCCTCTGCGTGTTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
6569215 TGCTGCCGCAACCCTC-ATTCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * * * * *
6569279 ACCCATGAAACGAGCGCAC-G-CGCGCGTGGGCATTACGTCGGCCAGAGAGACAGGATGTGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * **
6569342 CCGTGGGTCGATAGGGTGGTAGGTCGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
6569407 TTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** * *
6569472 ACTGGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTTTGCTTCGAGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
6569537 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
6569602 GATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCTATTTTA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
6569667 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
6569732 TCTCGAGGTTTGATGAGGAATAGAGGCCCAATATAATGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** *
6569797 ATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCTTAATGTCGTCGGTCAGGTTCTCCGG
715 ATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT----
* *
6569861 CGATGCTCCAGTGATGGTGCCCCGACAAAGAAAAAAGTGACACCAGCACATGCTTGAGCCCAGCA
776 C--TG-----GCGATGGTGCCCCGACGAAG-AAAAA-TG--A-CAGCAC---C---AG--CA-CA
* * * ** *
6569926 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCATAGACTACGAATGAACTTCGTATG
820 --TG-T--CGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
6569983 CCTAGACTAGGAATGAACTCCGTATGCTTAAGTGAACCCACGAAACGAGCGTGAGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
6570048 CGGCCAGAGGGGCGGGGTGCGTAAGCCGAGGATCAGTCGGGTCTCCCTCTGCGTGCAGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
6570113 TGCTGCCACAACCCTCGGTAC-GATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
6570177 ACCGACAAAACGAGC--G-GG-C--GGGCGGGCACCACACCGGCCAAAGAGACGGGATGCGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
6570236 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATTCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * * *
6570301 TTTTATGGCTTGTACATTCATACGATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGTAGGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * *
6570366 ACTCGTTTTCTATTTTTCACGATGTTCGAAAGTTTTTGCGGTCCGAGATTTTTTTAAATTTTTTC
390 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * * * *
6570431 AGAAGAATTTTTGGCCCCAAACATGGTGGACGTGATCCTTTTATTTTTCTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
6570496 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
6570561 GACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
6570626 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
650 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * *
6570691 ATGTGCGCACACCCCACCCGGCTCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCC
715 ATGTGCGCACACCCC-CCCGGC-CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGG-T-T--
6570756 GACGATGCTACGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCAGATTCCCGAGCCCAG
774 --C--T-CT--GGCGATGGTGCCCCGACGAAGAAAAAT---G-A-CAGC--A---CC-AG--CA-
* *
6570821 CATGTGCTGTAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
818 CATGT-C-G-A--AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
6570880 CTTGGACTATGAATGAACTCCGTATGCCTAAGTCAA-CCATGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
6570944 CGGCCAGAGGGGCGGGATGTGCAAACCGTGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * ** * * * *
6571009 TGCTACCGTAACCCTTGATCCGGTCCAATCTTAGACTGAGAATAAACTCCTTATGCCTAAGCTAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
6571074 CCGACGAAACAAGCGGGCGGGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGACGCGCAA
196 CCGATAAAACGAGCGGGCGGAC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
6571139 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAACGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * * *
6571204 TTTTTGTGGCTTGTAAATTCAGACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
6571269 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
* * *
6571334 TCGGAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAA
453 TCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
6571399 AAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
6571464 CGGACACTTTAATGGCTAATGGCAG-AAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * ***
6571528 GTTCTCAAGGTTTGATGAGGGATCGGGGGCCATTATAAGGGCCAAGTACTAGCACCCATCATGCA
648 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
6571593 TCATGT---------------G-----C---C--C---A---C-A--CCGTCGGTTAGGTTCTTT
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
6571624 GGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCC
778 GGCGATGGTGCCCCGACGAAG-AAAA-AT-G-A-CAG--CA---CC-AG--C-ACA--TG-T--C
* *
6571689 GGAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
824 GAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
6571737 CTTAGACTGGGAATGAACTTCGTACGACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
6571802 CGGCCAGAGGGGCGGGGTACGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * **
6571867 TGTTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTGCGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
6571932 CCGATAAAATGAGAGGGCGGGCGGGTGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGATAAAACGAGCGGGCGGAC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
6571997 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
6572062 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
6572127 GACTCGTTTTCTATTTTTCACGATTTTTAAAACGTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * **
6572191 CTGGAAGGAGTTTTTGAACCAAACTTAGTAGACGTGATCCTTGTATTTTTATAGGTGTGCACAAA
454 C-GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * * **
6572256 AAAATTCAGCTCAAAACTGGTAGTGTACAAGATTTTGGGACCATTTGAAAAAATTACCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
6572321 CAGACACTTTAATGGCTACTGGCAG-AAATCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ***
6572385 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCATGCA
648 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
6572450 TCATGTGCGCACACCCCCCCGGCCCCCCGATCATCAGAACCCCAATGCCATCGATCAGGTTCTC-
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
* *
6572514 AGCGATGGTTCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCT
778 GGCGATGGTGCCCCGACGAAGAAAAAT---G-A-CAG--CA--C-C-AG--CA-CA--TG-T-C-
* * * * *
6572579 GCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTACATATG
824 GAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
6572627 TTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
6572692 CGGCCAAAGGGGCGGGTTGCACAAATCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
6572757 TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
6572822 CCGATGAAACGAGC--G-GG-C--GGGCGAGCACCACGTCGGCCAGAGAGACGGGATGCACAAGC
196 CCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * ***
6572881 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTTATATTTTTGCATGCCAATTATATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
*
6572946 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * * *
6573011 CTCGTTTTCTATTTTTCATGATTTTCAAAAGTTTTTGTGGTTCGGGATTTTTTTACATTTTTTCA
391 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
6573076 GAAGGAGTTTTGG-CCCTAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
456 GAAGGAGTTTTGGACCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
6573140 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
6573205 AACACTTTAACGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ***
6573270 TCTCTAGGTTTGATGAGGGATAAGGGGCCAATATAAGGAAAAAGTACCAGCACCCATCGCACATC
650 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** *
6573335 ATGTGCGTACACCCCCCCGACCCCCCCGATCA-CTGGAACCCCAATGATGCCGGTCAGGTTCTCC
715 ATGTGCGCACACCCCCCCG-GCCCCCCGATCATC-GGAACCCCAATGCCGTCGGTCAGGTTCT-C
* * * *
6573399 GGTGATGTCCAGCGATGGTGCCCCAACGAAGAAAAAT-ACGGCACCAGCACATGCCCG--AGCC-
777 -----TG----GCGATGGTGCCCCGACGAAGAAAAATGACAGCACCAGCACATG-TCGAAACCCT
* ** ** **** **
6573460 CAG-CATGTGCC-ATCGCA-ACCCTCAATTTG-A-TTTG-AT-
832 CGGTCCGGT-CCGATCTTAGACTGGGAA--TGAACTCCGTATG
*** * *
6573496 CTTAGACTGGGAATGAACTTTATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
6573561 AGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCTCCTTATGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
6573626 TGCTGCCACAACCCTC-AGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
6573690 ACCGATAAAACGAGCGGGCGGGCAGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCA
195 ACCGATAAAACGAGCGGGCGGAC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * ** *
6573755 AGCCGTGGATCTATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGTC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
6573820 ATTTTTATGGCTTCTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
6573885 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGTGGTTCGAGGA-TTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTT
* * * *
6573949 TTCAGAAGGA-TTTTCGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCAGGCACA
452 TTCGGAAGGAGTTTTGGA-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
6574013 AAAAATTTCAGCTAAAAACTTGAAGTGTACATGATTTTGTGACCATTTGAAAAAACTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
6574078 TTCAGACACTTTAATGGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
6574143 GAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCATCCATCGCA
646 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
6574208 CATCATGTGCGCACACCGCCCCCCCCGGCCCCCCGATCATCGGAAACCCAATGCCGTGGGTCAGG
711 CATCATGTGCGCACA----CCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGG
* *
6574273 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGA
772 -T-T----C--T-CT--GGCGATGGTGCCCCGACGAAGAAAAAT---G-A-C-A-GCA---CC-A
* **
6574338 GCTCAGCTTGTGCTGTCAAAACCC-CTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
815 G--CA-CATGT-C-G---AAACCCTC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
6574402 G
871 G
* * * * * * * * *
6574403 CTTAAACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAGCGAACATACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
6574468 AGGCCAGA-GGGCGGGATGCACAAGTCGAGGATCGGCCGAGTCCCCTTTTGCGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
6574532 TGCTGCCACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
6574596 ACCGACGAAACGA-------G-C--GGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
6574651 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCGAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
6574716 TTTTATGGCTTGCAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
6574781 ACTCGTTTTCTATTTTTTAAGATTTTCAAAACTTTTTATGGTTTGAGATTTTTTAAAATATTTTT
390 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTT
* * *
6574846 -GAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
6574910 ACATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGGCCATTTGAAAAAAGCGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
6574975 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATTC-CTTTTAAGGGGGTGTGA
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGA
* *
6575039 GTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCAGCCATCGCACA
648 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** ** *
6575103 TCATGTGCGCACGTCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTC
713 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT-
* * * *
6575168 CGACGTGCTCCGACGATGGTGCCCCGATGAAGAAAAATGA-GGCACTAGCACATGCTCG-AGCCC
776 ---C-TG----G-CGATGGTGCCCCGACGAAGAAAAATGACAGCACCAGCACATG-TCGAAACCC
* * * * * ** * ***
6575231 AGCTTGTGC-TTCC-A-C-AACCCTCGGTCCG-A-TCCG-AT-
831 -TC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
6575266 CTTAGACTGGAAATGAATTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
6575331 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTTGGGT-CCCCTCTACGT-TTG-CTA-CC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
6575392 -G-T-----AACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
6575450 CCGACAAAATGAACGGGCGGATGGCCGGACGGGCACTATGTCGGCCAGAGAGAGGGGATGCGTAA
196 CCGATAAAACGAGCGGGCGGACGG--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
6575515 GCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
6575580 -TTTTATTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 TTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
6575644 TGACTCATTTTCTATTTTTCA--A-----G--A-TTTTT----TT----A------AATA-TTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
6575684 T-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
6575748 AAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
6575813 CAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * **
6575878 GCTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGCACA
648 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** *
6575943 TCATGTGCGCACACCCCCCCCGCCCCCCGATCACCAGAACCCCAATATCGCCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT--
* * ** *
6576008 GACGATGCTCCGACATTGGTGCACCGGTGAAGAAAAAAACAGCACCAGCACATGCCCGAGCCCAG
776 --C--TG--GCG--A-TGGTGCCCCGACGAAG--AAAAA-TG-A-CAG--CA---CC-AG--CA-
* *
6576073 CATGTGCTTCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
818 CA--TG--TC-GAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
6576132 CATAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * * * *
6576197 C-GCCAGAACGGCATGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
6576261 TGCTGCTGCAACCCTC-AGTCTGGTCTAATCTTACACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
6576325 ACCAATGAAACGAGCGGGC--A----GGCAGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAG
195 ACCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
6576384 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
6576449 TTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG-AAGGAG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GAC
* * * * * *
6576513 GACTCGTTTTATA-TTTTCACGATTTTCAAAACTTTTTACGTTTCGAGATTTTTAAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
6576577 AGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
6576642 AAATTCAGCTAAAACCTCAAAGT
519 AAATTCAGCTAAAAACTCGAAGT
6576665 ACCAGCACCC
Statistics
Matches: 10262, Mismatches: 1356, Indels: 811
0.83 0.11 0.07
Matches are distributed among these distances:
837 2 0.00
838 1 0.00
839 263 0.03
840 57 0.01
841 3 0.00
842 5 0.00
843 1 0.00
844 1 0.00
846 1 0.00
847 1 0.00
848 2 0.00
851 3 0.00
852 2 0.00
853 62 0.01
854 3 0.00
855 7 0.00
856 7 0.00
857 355 0.03
858 373 0.04
859 12 0.00
860 10 0.00
861 227 0.02
862 9 0.00
863 67 0.01
864 61 0.01
865 715 0.07
866 72 0.01
867 17 0.00
868 170 0.02
869 195 0.02
870 9 0.00
871 13 0.00
872 12 0.00
873 8 0.00
874 10 0.00
875 4 0.00
876 70 0.01
877 455 0.04
878 11 0.00
879 2 0.00
880 34 0.00
881 43 0.00
882 342 0.03
883 131 0.01
884 490 0.05
885 18 0.00
886 690 0.07
887 144 0.01
888 132 0.01
889 59 0.01
890 870 0.08
891 124 0.01
892 10 0.00
893 127 0.01
894 862 0.08
895 60 0.01
896 243 0.02
897 389 0.04
898 302 0.03
899 35 0.00
900 120 0.01
901 353 0.03
902 8 0.00
903 118 0.01
904 648 0.06
905 155 0.02
906 123 0.01
907 63 0.01
908 267 0.03
909 3 0.00
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATAAAACGAGCGGGCGGACGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGC
GATGGTGCCCCGACGAAGAAAAATGACAGCACCAGCACATGTCGAAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6567316 original size:26 final size:26
Alignment explanation
Indices: 6567266--6567316 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6567256 CGATCCGATC
* *
6567266 TTAGACTGGGAATGAACAGCTTATGT
1 TTAGACTGGGAATGAACACCGTATGT
*
6567292 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACACCGTATG
6567317 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACACCGTATGT
Found at i:6568205 original size:26 final size:26
Alignment explanation
Indices: 6568176--6568225 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
6568166 GTCCGATCTT
6568176 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
6568202 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
6568226 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:6568695 original size:904 final size:895
Alignment explanation
Indices: 6566351--6576664 Score: 11693
Period size: 894 Copynumber: 11.7 Consensus size: 895
6566341 ACGACACCTG
* * * *
6566351 TCGAAATCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATG
1 TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
6566416 AACTCCGTATGACTAAGTTAACCCACGAAACGAGCGAGTGGGCGCTCAGCCGGCCAAAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
6566481 GGTGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCT
131 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * * *
6566546 C-GATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTGAGCAAACCGACAAAATGAGC
196 CGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
* ** * * *
6566610 GGGCGGACGGGTGGGTGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATA
260 --G-GG-CGGG-CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
6566675 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAGTGCCATTTTTATGGCTTGT
320 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
6566740 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTAT
385 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
6566805 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT
450 TTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT
* *
6566870 GAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACAATTCAGCTAAAA
515 GACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAA
* * **
6566935 ACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATGG
579 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
6567000 CTACTGGCAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGA
644 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* * *** *
6567064 TGAGGGATAGGGGGCCATTATAAGGGTCAAGTACCAGCACCCATCATGCATCATGTGGGCACACC
709 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
** * * * * * *
6567129 CCTTCGGCCCCCCGAACATCAGAACCACAATGCCATCTGTCAGGTTCT----CG--G-T---A--
774 CCCCCGGCCCCCCGATCACCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * *
6567182 ATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCTTTTGCT
838 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * ** * *
6567240 GCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACAGCTTATGTTTAGACTGGGAAT
1 TCGA-AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
6567305 GAACTCCGTATGCCTAAGTCAACCTACGAAACAAGCATGCGAGCGCTCAGCCGGCCAGAGTGGTG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* ** *** ** * *
6567370 GGGTGTACAAATTGGGGATCGGTCGGGTCCCTTTCTGCGTGCTGTCGATCCTGCTACCACAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * *
6567435 TC-GTTCGAAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGATAAAACGA
195 TCGGTTCG-GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA
* * *
6567498 GCGGGCGGACGGGCGAGCAGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
258 GC--G-GG-CGGGCGA-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* ** *
6567563 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGTCATTTTTATGGCTT
318 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
6567628 CTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
383 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * ** ** *
6567693 ATTTTTCACGATTTTCGAAACTTTCTGTGGTTCGAGG-TTTTTTAAAATTTTTTCAGAGGGA-TT
448 ATTTTTCATGATTTTCGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTTGGAAGGAGTT
* * *
6567756 TTCGGACCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAATTTCAGCT
512 TT-TGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCT
* * *
6567821 AAAAACTTGAAGTGTACATGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTA
575 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
6567886 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
640 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* * *
6567951 TTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCAATCGCACATCATGTGCGCA
705 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
6568016 CACCGCCCCCCCCGGCCCTCCCAATCACCGGAAACCCAATGCCGCGGGTCAGATTGTCCGGCGAT
770 CA----CCCCCCCGGCCC-CCCGATCACCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGCGAT
* * *
6568081 GCTCCGACGATGGTGCCCCGACGAAGAAAACTGCGGCACCAACACATGCCCGAGCCCAGCTTGTG
829 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
6568146 CT
894 CT
* *
6568148 ATCGAAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTGGGAAT
1 -TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
6568213 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCA
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *** *
6568278 GGATGCGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGTAACCT
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * *
6568343 TCGGTTCAGTCCGATCTTAGGCTGGGAATGAACTCCGTATGACTAAGCCAACCGACAAAATGAGC
195 TCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
**
6568408 GGGCGGGCGATCGGGCACTACGCCGGCCAGAGAGACACGATGCGCAAGCCGTGGATCGATAGGGT
260 GGGCGGGCGA-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
6568473 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
324 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
6568538 TCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTT
389 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
6568603 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGAAC
454 CATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGACC
* * *
6568668 CAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCGTGCACAAAACAATTTAGCT-AAAACGT
519 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAAC-T
* * **
6568732 GGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATGGCTA
582 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
6568797 ATGGCAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGA
647 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * *** *
6568861 GGGATAGGGGGCCATTATAAGGTCCAAGTACCAGCACCCATCATGCATCATGTGTGCACACCCCC
712 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
6568926 CCGGCCCCCCGATCATCAGAACCCCAATGCCATCGGTCAGG---T-------T-CT-CGACGATG
777 CCGGCCCCCCGATCACCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGGCGATGCTCCGACGATG
* *
6568979 GTGCCCCGACGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
841 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** *
6569034 GTCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAAT
1 -TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
6569099 CAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGCCGGCCAGATGGGCG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * ** * * * ** *
6569164 GGACGTGCAAGCCGAGGATCGACCGGATCACCCTCTGCGTGTTGTTGATCCTGCTGCCGCAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * **
6569229 TC-ATTCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAG
195 TCGGTT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG
* * * * * * * *
6569293 CGCACGCGCGCG-TGGGCATTACGTCGGCCAGAGAGACAGGATGTGCAAGCCGTGGGTCGATAGG
259 CG--GGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * ** *
6569357 GTGGTAGGTCGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGA
322 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
6569422 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTGGTTTTCTATTT
387 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * ** * * * * *
6569487 TTCAAGATTTTTGAAACTTTTTTTGCTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
452 TTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGA
* *
6569552 CCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAAC
517 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAAC
* * *
6569617 TCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCT
581 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
6569682 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
646 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
6569747 AGGAATAGAGGCCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
711 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** ** * *
6569811 CCCGGCCCCCCGATCGTCGGAACCTTAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCC-AGTGA
776 CCCGGCCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGA-CGA
* * * * **
6569875 TGGTGCCCCGACAAAGAAAAAAGTGACACCAGCACATGCTTGAGCCCAGCATGTGCT
839 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * ** * * *
6569932 GCCGCAACCCTCGGTCTGGTCCGATCATAGACTACGAATGAACTTCGTATGCCTAGACTAGGAAT
1 -TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
6569997 GAACTCCGTATGCTTAAGTGAACCCACGAAACGAGCGTGAGGGCGCTTAGTCGGCCAGAGGGGCG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * *
6570062 GGGTGCGTAAGCCGAGGATCAGTCGGGTCTCCCTCTGCGTGCAGCCGATCCTGCTGCCACAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * ** *
6570127 TCGGTACGATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
195 TCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
* * *
6570192 GGGC-GG-G-CGGGCACCACACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
260 GGGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
6570254 GTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTACATT
325 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * *
6570319 CATACGATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGTAGGACGACTCGTTTTCTATTTTTC
390 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * * * ** * *
6570384 ACGATGTTCGAAAGTTTTTGCGGTCCGAGATTTTTTTAAATTTTTTCAGAA-GAATTTTTGGCCC
455 ATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GACC
* * * *
6570448 CAAACATGGTGGACGTGATCCTTTTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
519 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTC
*
6570513 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTAC
583 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
6570578 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
648 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
6570643 AGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCAC
713 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C
* * * * *
6570708 CCGGCTCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTACGGCGAT
777 CCGGC-CCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * *
6570773 GGTGCCCCGACGAAGAAAAATGCAGCACCAGCAGATTCCCGAGCCCAGCATGTGCT
840 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * **
6570829 GTAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTGGACTATGAAT
1 -TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
6570894 GAACTCCGTATGCCTAAGTCAA-CCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * **
6570958 GGATGTGCAAACCGTGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * ** * * * *
6571023 TTGATCCGGTCCAATCTTAGACTGAGAATAAACTCCTTATGCCTAAGCTAACCGACGAAACAAGC
195 TCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--AA-AA-C
* * * *
6571088 GGGCGGGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATA
256 GAGCGGGCGGGC-GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
6571153 GGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAACGCCATTTTTGTGGCTTGT
320 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * *
6571218 AAATTCAGACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTAT
385 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
6571283 TTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTT
450 TTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT-GGAAGGAGTTTT
* * * *
6571348 GGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAA
514 TGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAA
* * *
6571413 AACTCGAAGTGCACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCGGACACTTTAATG
578 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
6571478 GCTAATGGCAG-AAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
643 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* * * ***
6571542 ATGAGGGATCGGGGGCCATTATAAGGGCCAAGTACTAGCACCCATCATGCATCATGTGC-C-CA-
708 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * ** ** * * * * * *** **
6571604 --CACC-G----TCGGTTA--GG---TTCTTTG--GCGAT--GGTGCCCCGACGAAG--AAAAAT
773 CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * **** * * ** * * * * *
6571651 AT-G-GCACCAGCAC-ATGCCCGA-GC-CCAACATGTGC-TGCCGGAACCC-TC-GGTCCAGT
838 ATGGTGC-CCCG-ACGAAGAAAAATGCGGCACCA-GCACATGCCCGAGCCCAGCATGTGC--T
* * ** * * * ** * * **
6571706 CCG--A-TCTTAGACTGG---GA-ATGA-ACTCCGTATG--CT---TA-GAC-T-G---GGAATG
1 TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAAT
* * * * *
6571752 -AACTTCGTACGACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * *
6571816 GGGTACGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCCACAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * ** * *
6571881 TCGG-TCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTGCGCCAACCGATAAAATGAG
195 TCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA--CG
* * * * *
6571945 AGGGCGGGCGGGTGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAAT
257 A--GCGGGCGGG-CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
6572010 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
319 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
6572075 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
384 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * *
6572140 TTTTTCACGATTTTTAAAACGTTTTACGGTTCGGGATTTTTTAAAATTTTTCTGGAAGGAGTTTT
449 TTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* * * * ** *
6572205 TGAACCAAACTTAGTAGACGTGATCCTTGTATTTTTATAGGTGTGCACAAAAAAATTCAGCTCAA
514 TGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAA
* * * * **
6572270 AACTGGTAGTGTACAAGATTTTGGGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATG
578 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
6572335 GCTACTGGCAG-AAATCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTG
643 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* ***
6572399 ATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACAC
708 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
6572464 CCCCCCGGCCCCCCGATCATCAGAACCCCAATGCCATCGATCAGGTTCT----C-A------G-C
773 CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGGCGATGCTCCGAC
* *
6572517 GATGGTTCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
837 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * * * *
6572576 GCTGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTACATATGTTTAGACTGGGAAT
1 TC-GAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
6572641 GAACTCCGTATACCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAAAGGGGCG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * ** * *
6572706 GGTTGCACAAATCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * **
6572771 TCGG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
195 TCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG
* * *
6572835 CGGGCGGGCGA---GCACCACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGT
259 CGGGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * ***
6572897 GGTAGGTGGGTTTAGGCAGATCTTTATATTTTTGCATGCCAATTATATTTTTATGGCTTGTAAAT
324 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
6572962 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTT
389 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * ** *
6573027 CATGATTTTCAAAAGTTTTTGTGGTTCGGGATTTTTTTACATTTTTTCAGAAGGAG-TTTTGGCC
454 CATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGACC
*
6573091 CTAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
519 C-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACT
* *
6573156 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTA
582 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
6573221 CTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGA
647 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *** *
6573286 GGGATAAGGGGCCAATATAAGGAAAAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCC
712 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** *
6573351 CCGACCCCCCCGATCACTGGAACCCCAATGATGCCGGTCAGGTTCTCCGGTGATG-TCC-AGCGA
777 CCG-GCCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGA-CGA
* * *
6573414 TGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCCA
839 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG-CT
* *
6573472 TCGCAA--C-C---C---T-CAAT-TT-GA-T-----T----T--G-AT-CTTAGACTGGGAATG
1 TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
*** * * * *
6573511 AACTTTATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCAGGCCAAAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * **
6573576 GATGCGCAAGCCGGGGATCGATCGGGTCTCCTTATGCGTGCTATCGATCCTGCTGCCACAACCCT
131 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * *
6573641 CAG-TCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATAAAACGAGC
196 CGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
* * *
6573705 GGGCGGGCAGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATA
260 GGGCGGGC-GAC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * ** * *
6573770 GAGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGTCATTTTTATGGCTTCT
320 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
6573835 AAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
385 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * ** **
6573900 TTTTCATGATTTTTGAAACTTTCTGTGGTTCGAGGA-TTTTTAAAATTTTTTCAGAAGGA-TTTT
450 TTTTCATGATTTTCGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* * *
6573963 CGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCAGGCACAAAAAATTTCAGCTAA
514 TGA-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAA
* * *
6574028 AAACTTGAAGTGTACATGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAAT
577 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
6574093 GGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
642 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * *
6574158 GGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCATCCATCGCACATCATGTGCGCACA
707 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
6574223 CCGCCCCCCCCGGCCCCCCGATCATCGGAAACCCAATGCCGTGGGTCAGGTTCTCCGGCGATGCT
772 ----CCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCT
* * * * *
6574288 CCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCTCAGCTTGTGCT
832 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
6574352 GTCAAAACCC-CTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAA
1 -TCGAAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * * * *
6574416 TGAACTCTGTATGCCTAAGTCAACCCATGAAGCGAACATACAGGCGCTCAGCAGGCCAGA-GGGC
64 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * * *
6574480 GGGATGCACAAGTCGAGGATCGGCCGAGTCCCCTTTTGCGTGCTGTCGATCTTGCTGCCACAACC
129 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
* * *
6574545 CTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
194 CTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG
* * *
6574609 ---GC-GG-G-CGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGT
259 CGGGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
6574668 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGCAAAT
324 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
6574733 TCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTT
389 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * * * * *
6574798 TAAGATTTTCAAAACTTTTTATGGTTTGAGATTTTTTAAAATATTTTTGAAAGGA-TTTTTGGCC
454 CATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GAC
6574862 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT
518 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACT
* * *
6574927 CGAAGTGCACAAGATTTTGTGGCCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTA
582 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
6574992 CTGGCAGCAAACCTGTAAAATCTGAAATTC-CTTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATG
647 CTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* **
6575056 AGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCAGCCATCGCACATCATGTGCGCACGTCCC
711 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
6575120 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACG-TGCTCCGACGA
776 CCCGG-CCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * * *
6575184 TGGTGCCCCGATGAAGAAAAATGAGGCACTAGCACATGCTCGAGCCCAGCTTGTGCT
839 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
6575241 TCCACAACCCTCGGTCCGATCCGATCTTAGACT--G---GAA------ATG---A-A-T-----T
1 TCGA-AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
6575285 ----T-CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGTG
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
6575345 GGATGCGCAAGCCGGGGATCGGTTGGGT-CCCCTCTACGT-TTG-CTA-CC-G-T-----AACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * * *
6575399 TCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAAC
195 TCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
* * * *
6575464 GGGCGGATGGCCGGACGGGCACTATGTCGGCCAGAGAGAGGGGATGCGTAAGCCGTGGATCGATA
260 GGGC-G--GG-C-GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
6575529 GCGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCA-TTTTATTGGCTTG
320 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA-TGGCTTG
* *
6575593 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTA
384 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
6575658 TTTTTCA--A-----G---------A----T-----TTTTTT-AAATATTTTTGAAAGGAGTTTT
449 TTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* *
6575697 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAA
514 TGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAA
*
6575762 AACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
578 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * **
6575827 GCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTTGAGGTTTG
643 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* **
6575892 GTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGCACATCATGTGCGCACAC
708 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * ** *
6575957 CCCCCCCGCCCCCCGATCACCAGAACCCCAATATCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
773 CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGAC
* ** ** *
6576022 -ATTGGTGCACCGGTGAAGAAAAAAACAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
837 GA-TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
6576081 TCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACTGGGAAT
1 TC-GAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * ** *
6576146 GAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCC-GCCAGAACGGCA
65 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * **
6576210 TGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCTTGCTGCTGCAACCC
130 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * * **
6576275 TCAG-TCTGGTCTAATCTTACACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAG
195 TCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG
* * *
6576339 CGGGCAGGC-A--GGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
259 CGGGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
6576401 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
324 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
6576466 TCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG-AAGGAGGACTCGTTTTATA-TTT
389 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTT
* * * * * * * * *
6576529 TCACGATTTTCAAAACTTTTTACGTTTCGAGATTTTTAAAAATTTTTTAGAAAGGAGTTTTGGCC
453 TCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGAC
*
6576594 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAACCT
518 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACT
*
6576659 CAAAGT
582 CGAAGT
6576665 ACCAGCACCC
Statistics
Matches: 8034, Mismatches: 1098, Indels: 582
0.83 0.11 0.06
Matches are distributed among these distances:
838 1 0.00
839 264 0.03
840 136 0.02
842 1 0.00
845 4 0.00
849 1 0.00
851 3 0.00
853 62 0.01
854 1 0.00
855 3 0.00
856 5 0.00
857 261 0.03
858 362 0.05
859 3 0.00
860 1 0.00
861 6 0.00
862 7 0.00
863 55 0.01
864 33 0.00
865 199 0.02
866 53 0.01
867 18 0.00
868 173 0.02
869 206 0.03
870 21 0.00
871 3 0.00
872 8 0.00
873 13 0.00
874 7 0.00
875 9 0.00
876 65 0.01
877 462 0.06
878 16 0.00
879 14 0.00
880 48 0.01
881 80 0.01
882 341 0.04
883 117 0.01
884 43 0.01
885 11 0.00
886 668 0.08
887 116 0.01
888 12 0.00
889 108 0.01
890 773 0.10
891 111 0.01
892 11 0.00
893 132 0.02
894 856 0.11
895 81 0.01
896 174 0.02
897 176 0.02
898 301 0.04
899 19 0.00
900 10 0.00
901 4 0.00
902 5 0.00
903 116 0.01
904 651 0.08
905 138 0.02
906 126 0.02
907 61 0.01
908 263 0.03
909 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
CGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG
GGCGGGCGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGACCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
CCCCCCGATCACCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
Found at i:6569095 original size:26 final size:26
Alignment explanation
Indices: 6569059--6569111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6569049 CTGGTTTGAT
*
6569059 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATCAACTCCGCATG
*
6569085 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGCATG
6569111 C
1 C
6569112 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGCATG
Found at i:6569996 original size:26 final size:26
Alignment explanation
Indices: 6569959--6570009 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6569949 GGTCCGATCA
*
6569959 TAGACTACGAATGAACTTCGTATGCC
1 TAGACTACGAATGAACTCCGTATGCC
*
6569985 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTACGAATGAACTCCGTATGC
6570010 TTAAGTGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTACGAATGAACTCCGTATGCC
Found at i:6570493 original size:894 final size:892
Alignment explanation
Indices: 6566358--6571607 Score: 6568
Period size: 886 Copynumber: 5.9 Consensus size: 892
6566348 CTGTCGAAAT
* * *
6566358 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
6566423 TATGACTAAGTTAACCCACGAAACGAGCGAGTGGGCGCTCAGCCGGCCAAAGGGGCGGGGTGCGT
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
6566488 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGATCTG
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTC-G
* * * *
6566553 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTGAGCAAACCGACAAAATGAGCGGGCGGAC
195 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC--G-GG-C
* * * * *
6566618 GGGTGGGTGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
256 ----GGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
6566683 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAGTGCCATTTTTATGGCTTGTAAATTCAT
317 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
6566748 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATG
382 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * ** **
6566813 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GAACCAA
447 ATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGA-TTTTTGGCCCCAA
* *
6566877 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACAATTCAGCTAAAAACTGGAA
511 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAA
* **
6566942 GTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATGGCTACTGG
575 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
6567007 CAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
640 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * *** * **
6567071 TAGGGGGCCATTATAAGGGTCAAGTACCAGCACCCATCATGCATCATGTGGGCACACCCCTTCGG
705 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * * *
6567136 CCCCCCGAACATCAGAACCACAATGCCATCTGTCAGGTTCT----CG--G-T----AATGGTGCC
770 CCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCC
* * * *
6567190 ACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCTTTTGCTGCCACAAC
835 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * ** * *
6567248 CCTCAGTCCGATCCGATCTTAGACTGGGAATGAACAGCTTATGTTTAGACTGGGAATGAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * **
6567313 TATGCCTAAGTCAACCTACGAAACAAGCATGCGAGCGCTCAGCCGGCCAGAGTGGTGGGGTGTAC
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
*** ** * * *
6567378 AAATTGGGGATCGGTCGGGTCCCTTTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGTTCGA
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCG-
* * *
6567443 AT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGATAAAACGAGCGGGCGGA
195 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC--G-GG-
* * *
6567507 CGGGCGAGCAGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGT
255 CGGGC--G--GGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** * *
6567572 AGGTGGGTTTAGGCACATCTTCATGTTTCTATGTGCCAATGTCATTTTTATGGCTTCTAAATTCA
316 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
6567637 TACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
381 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* ** * * * *
6567702 GATTTTCGAAACTTTCTGTGGTTCGAGGTTTTTTAAAATTTTTTCAGAGGGATTTTCGGACCCAA
446 GATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
* * *
6567767 ACTTGGTATACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAATTTCAGCTAAAAACTTGAA
511 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAA
* *
6567832 GTGTACATGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGG
575 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
6567897 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGA
640 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
6567962 TAGGGGGCCAATATAAGGGACAAGTACCAGCACCAATCGCACATCATGTGCGCACACCGCCCCCC
705 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCCC
* * * * * *
6568027 CCGGCCCTCCCAATCACCGGAAACCCAATGCCG-CGGGTCAGATTGTCCGGCGATGCTCCGACGA
766 CCGGCCC-CCCGATCATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCG-CGA
* * * ** *
6568091 TGGTGCCCCGACGAAGAAAACTGCGGCACCAACACATGCCCGAGCCCAGCTTGTGCTATCGAAAC
828 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
6568156 CCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTGGGAATGAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
6568221 TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * *** * *
6568286 AAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGTAACCTTCGGTTCA
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGG-TCG
* * * *
6568351 GTCCGATCTTAGGCTGGGAATGAACTCCGTATGACTAAGCCAACCGACAAAATGAGCGGGCGGGC
195 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC-GG-
* **
6568416 GATCGGGCACTACGCCGGCCAGAGAGACACGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
258 G--CGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
6568481 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
321 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
6568546 TGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTT
386 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * ** **
6568611 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GAACCAAACTT
451 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGA-TTTTTGGCCCCAAACTT
* * * *
6568675 GGTAGACGTGACCCTTGTATTTTTGTTGGCGTGCACAAAACAATTTAGCT-AAAACGTGGAAGTG
515 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAAC-TCGAAGTG
* ** *
6568739 TACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATGGCTAATGGCAG
578 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
6568804 -AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
643 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * *** *
6568868 GGGGCCATTATAAGGTCCAAGTACCAGCACCCATCATGCATCATGTGTGCACACCCCCCCGGCCC
708 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* *
6568933 CCCGATCATCAGAACCCCAATGCCATCGGTCAGGTTCT----CGA-------CGATGGTGCCCCG
773 CCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCG
* * * *
6568987 ACGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAAC
838 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** * *
6569042 CCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATCAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
6569107 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGCCGGCCAGATGGGCGGGACGTGC
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * * ** * ** *
6569172 AAGCCGAGGATCGACCGGATCACCCTCTGCGTGTTGTTGATCCTGCTGCCGCAACCCTCATTCCC
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT-CG
* * **
6569237 GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGCACGCGC
195 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG---G-GC
* * ** * * * * *
6569302 GCGTGGGCATTACGTCGGCCAGAGAGACAGGATGTGCAAGCCGTGGGTCGATAGGGTGGTAGGTC
256 GGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
6569367 GGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAA
321 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
6569432 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTGGTTTTCTATTTTTCAAGATTT
386 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* ** * * *
6569497 TTGAAACTTTTTTTGCTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
451 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTG
* *
6569562 GTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTA
516 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* * *
6569627 CAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCA
580 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
6569692 AACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAG
645 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
6569757 GCCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
710 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* ** * * *
6569821 CGATCGTCGGAACCTTAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCCGA
775 CGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGA
* * * * **
6569886 CAAAGAAAAAAGTGACACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAAC
839 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* ** * * *
6569940 CCTCGGTCTGGTCCGATCATAGACTACGAATGAACTTCGTATGCCTAGACTAGGAATGAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
6570005 TATGCTTAAGTGAACCCACGAAACGAGCGTGAGGGCGCTTAGTCGGCCAGAGGGGCGGGGTGCGT
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * *
6570070 AAGCCGAGGATCAGTCGGGTCTCCCTCTGCGTGCAGCCGATCCTGCTGCCACAACCCTCGGTACG
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT-CG
* ** *
6570135 ATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
195 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
* *
6570200 GGGCACCACACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
260 GGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
6570265 TAGGAACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTACATTCATACGATGGT
325 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
6570330 CCTTTAAGCCTTCACGTGAAGTTTTATGGTAGGACGACTCGTTTTCTATTTTTCACGATGTTCGA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
* * * * * * *
6570395 AAGTTTTTGCGGTCCGAGATTTTTTTAAATTTTTTCAGAAGAATTTTTGGCCCCAAACATGGTGG
455 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAG
* *
6570460 ACGTGATCCTTTTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
520 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
6570525 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACC
584 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
6570590 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
649 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
*
6570655 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCACCCGGCTCCCCCG
714 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGC-CCCCCG
** * * *
6570720 ATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTACGGCGATGGTGCCCCGACG
777 ATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-CCGCGATGGTGCCCCGACG
* * * **
6570785 AAGAAAAATGCAGCACCAGCAGATTCCCGAGCCCAGCATGTGCTGTAGCAAC
841 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * **
6570837 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTGGACTATGAATGAACTCCG
1 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
6570902 TATGCCTAAGTCAA-CCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGC
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * ** * *
6570966 AAACCGTGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGTAACCCTTGATCCG
131 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT-CG
** * * * * *
6571031 GTCCAATCTTAGACTGAGAATAAACTCCTTATGCCTAAGCTAACCGACGAAACAAGCGGGCGGGC
195 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--AA-AA-CGAGCGGGC
* *
6571096 GGGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTA
256 GGGC--G-G-GCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * *
6571161 GGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAACGCCATTTTTGTGGCTTGTAAATTCAG
317 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
6571226 ACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATG
382 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * **
6571291 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGAGCCAA
447 ATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCAGAAGGATTTTTGGCCCCAA
* *
6571356 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAAAACTCGAA
511 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAA
* * * *
6571421 GTGCACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTAATGG
575 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
6571486 CAG-AAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
640 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * * *** *
6571550 TCGGGGGCCATTATAAGGGCCAAGTACTAGCACCCATCATGCATCATGTGCCCACACC
705 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
6571608 GTCGGTTAGG
Statistics
Matches: 3781, Mismatches: 506, Indels: 132
0.86 0.11 0.03
Matches are distributed among these distances:
885 6 0.00
886 657 0.17
887 108 0.03
888 2 0.00
889 10 0.00
890 567 0.15
891 106 0.03
894 453 0.12
895 20 0.01
896 168 0.04
897 172 0.05
898 302 0.08
899 15 0.00
900 14 0.00
902 2 0.00
903 112 0.03
904 643 0.17
905 153 0.04
906 3 0.00
908 266 0.07
909 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCGG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCG
GGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCA
TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
Found at i:6571740 original size:26 final size:26
Alignment explanation
Indices: 6571711--6571760 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
6571701 CCAGTCCGAT
6571711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6571737 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
6571761 CGACTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6574406 original size:26 final size:26
Alignment explanation
Indices: 6574377--6574429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6574367 CTAGTCCGAT
* *
6574377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
6574403 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
6574429 C
1 C
6574430 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:6576137 original size:26 final size:26
Alignment explanation
Indices: 6576108--6576158 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6576098 GGTCCGATCT
6576108 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
6576134 TAGACTGGGAATGAAGTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
6576159 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:6576882 original size:26 final size:26
Alignment explanation
Indices: 6576846--6576898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6576836 CCGATCCGAT
6576846 CTTAGACTAGGAATGAACGCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
*
6576872 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
6576898 C
1 C
6576899 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACGCCGTATG
Found at i:6580418 original size:26 final size:26
Alignment explanation
Indices: 6580389--6580441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6580379 CCAATCCGAT
* *
6580389 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
6580415 CTTAGACTAGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
6580441 C
1 C
6580442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:6581257 original size:903 final size:903
Alignment explanation
Indices: 6576661--6591102 Score: 17561
Period size: 903 Copynumber: 16.3 Consensus size: 903
6576651 TAAAACCTCA
** * * * * *
6576661 AAGTACCAGCACCCATTACACATTATGTTCGGACACCCCCCGGCCCCCTCGATCGTCGGAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * * *
6576726 AATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGCGCCCCGATGAAGAAAAATGCGGC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * *
6576791 ACCAGCACATGCTCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAG
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
* * *
6576856 GAATGAACGCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ** * **
6576921 CGTGC-GGCGCTCAGTCGGCCAGAGGGGCGGGATGCATAAGCCTA--GGATTGACCGGGTCCCCC
261 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-AGGGGATCGGTCGGGTCCCCC
* * * * * * * * * * *
6576983 TCTACATGTTGCCGATCCTACTGCTGTAA-GCTGCAGTCTGGTCTGATCTCAAACTGGGAATGAA
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCT-CGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * *
6577047 CTCCGTAAGCCTAAGCCAATCGACGAAACGA----TC-G--GGCGGGCGGGCACTACGCCGGCCA
389 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCA
* * * *
6577105 GAGAAACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCACAT
454 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
6577170 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGT
519 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
6577235 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAG
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* ** * * *
6577300 GATTTTTTTAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGGGATCCCTGTATTT
649 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
6577365 TTTTTGGCATGCACAAAAAAATTCAAGC--AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
714 TTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
6577428 AAAAAAATGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
778 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
6577493 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
843 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
6577554 AAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCAGAACCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* ** * *
6577618 CAATGTCGCCGATCAGGTTCTCCGACGATGCTCCTACGATGGTGCCCTGACGAAGAAAAATACGG
65 CAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
* *
6577683 CACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTC-G--------G-TC-----C--
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
6577731 -G-AT----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * ** *
6577787 GCGTACGGGAGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGACCTGGTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
* * * * * *
6577851 TCTACCTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
6577916 TCGGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCAGGCGGGCAGGCACTACACCGGACA
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGCCGGCCA
* * *
6577981 GAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATAT
454 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
6578046 TTTTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGT
519 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** * * *
6578111 GAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACCTTTTGCGGTTCAG
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* * *
6578176 GATTTTTTTAAATTTTTTTGCAATGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTT
649 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
6578240 TTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGA
714 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
6578305 AAAAAGTTTCCTCATTTCAGACACTTTATTGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGC
779 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
6578370 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
844 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
6578430 AAGTACCAGCACCCATCACACATCATTTGCACACACCCCCCGGCCCCCCTGATCGCCGGAATCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * **
6578495 AATGCCGCCAGTCAGGTTCTCCGACGATGTTCCGGCGATGGTGCCCCGACGAAGAAAAATGCTTC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
** * * * ** * **
6578560 ACCAGCACATGCTTGAGCCCAGTATGTGCTGTCGCAACCCTCAGTCCGGTCGGATGATAGACTGG
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
* * * * *
6578625 GAATGAACTTCGTACGCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAAGCCACGAAACGAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
6578690 CTTGCGGGCACTCAGTCGGCCAG-GGGGCGGGATGCGCAAGAC-GGGGATCGGTCGGGTCCACCT
261 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCCT
* * * ** *
6578753 CTGCGTGTTGCCGATCCTACTGCCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAGTGAACT
326 CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
6578818 CC-TATGCCTAAGCCAACCGACAAAACGAGCAGGC-G--GGCGAGCGGGCACTATGTCGGCCAGA
391 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGA
* *
6578879 GACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTT
456 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
6578944 CTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGA
521 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
6579009 AGTTTCAAGGCAAGACGACTCGTTTTTTATTTTTCACGA-TTTTGAAAGCTTTTTGCGGTTCGAG
586 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTCGGG
*
6579073 ATTTTTTAAAACTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
650 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
6579138 TGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
715 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
** * * * * * *
6579203 AAAAGTGTCCCTTTTTCAGACACTTTAATGGCAATTGGCAACAAACTTGTAAAAGCTGAAATGCT
780 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
6579268 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCC
845 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
6579327 AAGTACCAGCACCCATCGCACATAATGTGTGCACACCCCCCGGCCCCCCTGATCGTCGAAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * ** ** *
6579392 AATGCCACCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGGC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * *
6579457 ACCAGCACATGCTCGAGCGCAGCAAGTGCTGCAGCAA-CC-C--T----T--G---GT--AC---
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
6579504 --A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * **
6579561 CGTGCGGGCGTTCAACCGGCCAAAAGGGTGGGATGCGCAGGTC-GGGGATCGACCGGGTCCCCCT
261 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCCT
** * * ** *
6579625 CTGCGTGCTACCGATCCTATTGCTGCCACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACT
326 CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
6579690 CCGTATGCCTAAGCCAACCGATGAAACGAGCAGGTGGCAGGCGGGTGGGCACTACGTCGGCCAGA
391 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGA
* * *
6579755 GAGACGGGATGTGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTT
456 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
6579820 CTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
521 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * ** * *
6579885 AGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATATTCAAAACTTTTTACAGTTTGGGA
586 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
* *
6579950 TTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTT
651 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
6580015 TTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAA
716 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
6580080 AAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGTAGCAAACCTGTAAAATCTCAAATGCTC
781 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * **
6580145 TTTAAGGGGGTGTGAGTTCTCAAGGATTGATGAGGGATAAGGGGTGAATATAAGGGCC
846 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
6580203 AAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCCCGATCGTCGGAACCA
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* * * * * *
6580268 CAATGCCTCCGGTTAGGTTCTCC-AGCGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATGTG
65 CAATGTCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
6580332 ACACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCGTCGGTCCAATCCGATCTTAGATT
129 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACT
* * *
6580397 GGGAATGAACTCCGTATGCTTAGACTAGGAATGAAGTCCGTATGCCTAAGTCAACCCATGAAACG
194 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
6580462 AGCGTGCGGGCACTCAGCCGGCCAAAGGGCCAGG-TGACGCAAGTC-GGGAATCGGTCGGGTCCC
259 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CGCAAGCCAGGGGATCGGTCGGGTCCC
* * * * * * *
6580525 CTTTTGTGTGCTACTGATCCTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTAGGAATGA
323 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * * * * * *
6580590 ACTCCATATGCCAAAGCCAACCGATGAAATGAGCGGGCGAGCAGGCGAGCGAGCACTACACCGGC
388 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCAGGCGGGCGGGCACTACGCCGGC
6580655 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
452 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
6580720 ATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCTTTAAGCCTTCAT
517 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** * * *
6580785 GTGAAGTTTCAAAGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTC
582 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
** * *
6580850 AAGATTTTTT-AAATTTTTTTGGAAGGAGTTATGGCCCCAAACATGGTAGACGTGATCCTTGTAT
647 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
6580914 TTTTTTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
712 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
6580979 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAACAAACCTGTAAAATCTCAAAT
777 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * **
6581044 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAAGGGGTGAATATAAGGGCC
842 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
6581106 AAATACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAACCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* * * ** * *
6581171 TAGTGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTGAAAAAAAATGCGA
65 CAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
6581236 CACCAGCACATGCTCGAGCCCAGAATGTGCAGCCGCAACCCTC-G--------G---TT---C--
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
*
6581284 GG--T---CT--G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * **
6581340 GCGTGCGGGCGTTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCC-TGGGATCGACCGGGTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
* * * * * * * * *
6581404 TCTACGTGCTGCCGATCTTGCTGCTGCAACCCTCGATCCGATCTAAACTTAGACT-GGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
6581468 TCTGTATGCCTAAGCCGACCGACGAAACAAGCGGGCGG-A--CGGGAGGGCACTACGTCGGCTAG
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAG
*
6581530 AGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
455 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
6581595 TCTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTG
520 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * *
6581660 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTGAAACATTTTACAGTTCAGG
585 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
* *
6581725 ATTTTTTAAAATTTTTTTGCAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTT
650 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * * *
6581790 TGTTGGCATGCATAAAACAATACAGCTAAGAACTCAAAGTGTACAAGATTTTGTGAGCATTTGAA
715 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
6581855 AAAAGTGTCGCTATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
780 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
6581920 CTTTGAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCC
845 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
6581979 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCAGAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* ** * * **
6582044 AATGTCGCAGGTCAGGTTCT-TTAGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGG
66 AATGTCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
*
6582108 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T----T--GATC-----C--
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
* * * *
6582156 -G---G---TCC-AAT-CTTAGACTGGCAATGAACTCCGTATGCTTAAGTCAACACACGAAACGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
6582212 GCGTGCGGGTGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCA-GGGATCCGCCGGGTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
** ** * * ** * * *
6582276 TCTGTATGCTGTCGTTCCTGCTACCATAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * *
6582341 TCCGTCTGCCTAAGCTAACCGACGAAACGAGCGAGTG-GGCAGGCGGGCAGGCACTACGCCGACC
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-GCGGCAGGCGGGCGGGCACTACGCCGGCC
** * * *
6582405 AGAGAGATAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCTTA
453 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
6582470 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCATCACG
518 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * ** * **
6582535 TGAAGTTTCATGGCAAGAGGACTCGTTTCCTATTTTTAATGATTTTCAAAATTTTTTGTGGTTCG
583 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
** * * *
6582600 ATATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGAATT
648 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
6582665 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTT
713 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTT
* *
6582729 GAAAAAAGTGTCCCAATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
777 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
6582794 GCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-C
842 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
6582855 AAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACC
* * * * * * * *
6582920 TCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGCTGCCCCGGCAAACAAAAATGTG
64 CCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * ** * ***
6582985 GCACCAGAACTTGCTCGAGCCCAGCATGTGCTGTTGCAACCCTCAGTCTGGTCCGATCTTAGACT
129 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACT
* * *
6583050 AGGAATGAACTCCGTATGCTTAGACTTGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACG
194 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
6583115 AGCGTTCGGGCGCTTAGCCGGCCAGAGGGGTGGGATGAGCATGTCA-GGGATCGATCGGGTCCCC
259 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCC
* * *
6583179 CTCTGCGTGTTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAA
324 CTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* *** *
6583244 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC-G-A-GCAAACGGGCACTACGCTGGCCA
389 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCA
* * * *
6583306 AAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCCTAT
454 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
6583371 TTCTGCATGCCAATGCCATTTTTATGGCTTGTACATTCATAGAATGGTCCCTTAAGCCTTCACGT
519 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
6583436 GAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTCCGG
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* * *
6583501 GATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
649 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
6583566 TTGTTGGCATGCATAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
714 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
6583631 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGC
779 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
6583696 TCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
844 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
6583756 AAGTACCAGCACCCAT---ACATCATGTGTGCACACCCCTCTCGGCCCCCCCGATCGCCGAAACC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C-CGGCCCCCCCGATCGCCGGAACC
* * * * * * * *
6583818 CCAATGTCGTCGGTCAGGTTCTCCGGCGATACTCCGGTGATGCTACCCCGGCAAAGAAAAATGCG
64 CCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * ***
6583883 GCACCAGCACCTGCCCGAGCCCAGCATTTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTA-ACT
129 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACT
*
6583947 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
194 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
6584012 AACGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCA-GGGATCGG-CTGGGTCCC
259 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTC-GGGTCCC
* * * * * * * * *
6584075 CCTCTGCATGCTACCAATCTTGCTGCTGCAACGCTTGGTCCGATGTGATCTTAGACTGGGAATGA
323 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * *
6584140 ACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC-G--GGCGGGCGGGCACTACGCCAGCC
388 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCC
6584202 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
453 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*** *** *
6584267 TTTCTATGTGCCAATAAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACG
518 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
**
6584332 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTTTTCG
583 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * * * *
6584397 AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGATGGGATCCTTGTATT
648 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
6584462 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
713 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
6584527 AAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATG
778 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
6584592 CTATTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
843 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
6584653 AAGTGCCAGCTCCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * * * *
6584718 AATGTCGCCAGTCAGGTTCTCCGATGATGCTCCGGCGATAGTGCCCCGGCGAAGAAAAATGTGAC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * ** ** *
6584783 ACCAGCACATGCCCGAGGCCAGCATGTGTTGCCATAACCCTCGGTCTGATCTGATCTTAGACTGG
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
* *
6584848 GAATGAACTCCGTATACTTAGACTGGGAATGAACTTCGTATG-CTAAAGTCAACCCACGAAACGA
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGA
* * * * * *
6584912 GCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCACAAG-CTGGGGATTGGTCGGGTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
* * * * * * * * * * *
6584976 TTTGCATGCTGCGGAGCCTACTGCAGTAGCCCTCGAT-TGGATCTGATCTTAGACTGGGAATCAA
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAA
* * * *
6585040 CTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGCCGGGC-GGTAGGGCAGGCACTACGCCGGC
389 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCAGG-CGGGCGGGCACTACGCCGGC
* ***
6585104 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAATTACATCTTCAT
452 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
6585169 ATTTCTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATGCAAAGGTCTCTTAAGCCATCAC
517 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
6585234 GTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTGCGGTTT
582 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * *
6585299 GGGATTTTTTAAAATCTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTGGACATGA-CCGTTGTA
647 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTA
*
6585363 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATT
711 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * *
6585428 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGAAAACTTGTAAAATCTCAAA
776 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
6585493 TGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
841 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
6585556 AAGTACCAGCACCCATCACACATCATGTGTGCACAGCCCCACCGGCGCCCCTGATTGTCGGAACC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATCGCCGGAACC
* * * *
6585621 TCAATGTCACCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGACGAAGAATAACGCG
64 CCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* ** *
6585675 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCGGTCCAGTCCGATCTTAGACT
129 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACT
* * ** *
6585740 GGTATTGAACTCTATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
194 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
6585805 AACGCGCGGGTGCTCAACCGGCCAGAGTGGCGGGATGCACAAGTC-GGGGATCGGTCGGATCCCC
259 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCC
* * * * * * * * *
6585869 CTCTGCATGTTGCTGATCCTACTAACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGAGAATGA
324 CTCTGCGTGCTACCGATCCTGCT-GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * * * * *
6585934 ACTCC-AATGCCTAAGTCAATCGATGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGC
388 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGCCGGC
* * ***
6585998 CAGAGAGACGGGATGCGCATGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAATTACATCTTCAT
452 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* ** * * * * *
6586063 ATTTTTGTGTTCCAATGCCATTTTTATGACTTGTAAATTCATGCAATGGTCTCTTAAGCCATCAC
517 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
6586128 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
582 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * * *
6586193 GGGATTTTTTAAAAATTTTTTGGAAGGAGTTTTGACCCCAAACATGGTATACGTGACCCTTGTAT
647 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
6586258 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
712 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * *
6586323 GAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGACACCAAACCTGTAAAATCTCAAAT
777 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
6586388 GCTCTTTAAGGGAGTATGAGTTCTCGAGGTTTGGTGAGGGATAAGGGGCCAATATAAGGGCC
842 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
6586450 AAGTACCAGCACCCATCGCACATCATGTGCGCATAGCCCCCCGGCGCCCCCGATCGCCGGAACCG
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
** * * * * *
6586515 CAATGTTACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACAAAGAATAATGCGG
65 CAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *
6586580 CACCAG--CA----C-A---CAGCATGTGCTACCGTAACCCTCGGTCCAGTCCAATCTTAGACTG
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
* * * * *
6586635 GGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACTAAATGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** * * * * * ** **
6586700 ACGCACGGGCGCCCAACCAGCCAGAGGGGCGGGATGCACAAGTC-GGGGATCGACCGAATCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
* * * * * * **
6586764 TCTGTGTGTTACCGATCCTACTACCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* ** * *
6586829 TCC-AATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGTGGGCACTACGTCGGCCA
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGCCGGCCA
* * * * *
6586893 GAGAGACAGGATGCGCATGCCATGGATCGATAGGTTGGTAGATGGGTTTAGGCACATCTTCATA-
454 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
6586957 TT-T-C-T-CCAATGCCATTTTCATGGCTTTTAAATTCATACAATGGACCGTTAAGCCTTCACGT
519 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
6587018 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTTGA
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* * *** * *
6587083 GATTTTTTAAAAGTCTTTCAAAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATTCTTGTATTT
649 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
6587148 TTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGA
714 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
6587213 AAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
779 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
6587278 TCTTGAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
844 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
6587338 AAGTACCAGCACCCATCGCACATCATGAGCGCACA--------CCCCCCCGATCGCCGGAACCTC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * ** * * *
6587395 AATGCCGTCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGTCCCAACGAAGAAAAATGCGGC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
6587460 ACCAGCACATGCCCGAGCCCAGCATGTGCT------A--C-C-GT--AAACC--TC-T-G-TTCG
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
* * *
6587508 G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGTG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** * * *
6587564 CGTGCGGGCGCTCAGCTAGCCAGAGGGGTGGGATGCACAAGCC-GGGGATCAGTCGGGTCCCCCT
261 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCCT
* * * ** * *
6587628 CTACATACTATAGATCTTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
326 CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
6587693 CCGTATGCGTAAGCCAACTGACGAAACGAGCGGGGGGGCGGGTGGGCGGGCACTACGTCGGCCAG
391 CCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGCAGGCGGGCGGGCACTACGCCGGCCAG
* *
6587758 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATGTT
455 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** * ** * *
6587823 TCTGTGTTCTGATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTT
520 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
6587888 AAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGGG
585 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
* * * * *
6587953 ATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTATTTT
650 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * *
6588018 GGTTGGCATGCATAAAAAAAGTCAGCTAAAAAGTCGAAGTGTAGAAGATTTTGTGACCATTT-AA
715 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * * *
6588082 AAAAGTGTCCCCATTTAAGATACTTTAATGGCGACTGGAAGCAAACATGTAAAATCTCAAATGCT
780 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * * * *
6588147 CTTTAAGAGAGTG-GAGATCTCAAGGTTTGACGAGGGATAGAGGGCCAATATAAGGGCC
845 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** * * *
6588205 AA-TACCAGCACCCATAACACATCATGAGCGCACGCCCCCTCGGCCCCCCCGATCGCCGGAACCT
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCC
* * * *
6588269 CAA--T-GCC-ATC--G--AT-C-A-GGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
65 CAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * ** * *
6588323 CACCAGCACATGCCCAAGCCTAGCATGTGCTGCCGTAAACCTCTATCCGATCCGATCTTAGATTG
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
*
6588388 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * ** * *
6588453 GCGTGCGGGCCCTCAACCAGAAAGAGGGGCGGGATGCGCAAGCCA-GGGATCGGCCGGTTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
* * * * * * **
6588517 TCTACGTACTATCGATCCTACTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
6588582 TTCGTATGCCTAAGCCAACCAAAGAAACGA--GTG-GGTAGGCGGGCGGGCACTACGTCGGCCAA
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAG
**
6588644 AGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
455 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * * ** * *
6588709 TCTACATGCCAATGCCATTTTTATGGCTTTTAAATTCATGCAACGGTATCTTAAGCCATCACATG
520 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
6588774 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGCTAGGG
585 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
* * * * * *
6588839 ATTTTTTAAAATTTTTTTAGAAGGAGTTCTGGTCCCAAACCTAGTAGATGTGATCCTTGTATTTT
650 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
6588904 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AA
715 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
6588968 AAAAGTGTCCCCATTTAAGATACTTTAATGGCGACTAGCAGCAAACCTGTAAAATCTCAAATGCT
780 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
6589033 CTTTAATGGGGTG-GAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCC
845 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
6589091 AAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
** * * * *
6589156 AA-CACTGTCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAGAAATGCGG
66 AATGTC-GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
*
6589220 CACCAGCACATGCCGGAGCCCAGCATGTGCTGCCGCAACCCTC-G--------G----T---CT-
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTG
* * *
6589268 GG--T---CT--G-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGA
195 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * * *
6589324 GCATCCGGGCACTCAGTCGGCTAGTGGGGTGGGATGCGCAAG-CTGGGGATCGATCGGGTCCCCC
260 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCC
** * * * * ** *
6589388 TCTGCGTGCTGTCAATCCTGCTACCGCAACCCTTGGTCCGGTCCAATCTTAGACTAGGAATGAAC
325 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * ** * * *
6589453 TTCGCATGCCTAAGCCAACCGACGAAACAAGCGGACGGGTGG-GTAGGTGGGCATTACGTCGGCC
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCG--GGCGGGCACTACGCCGGCC
* * *
6589517 AGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCTCATCTTCATA
453 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * *
6589582 TTTCTGCATGCCAATGCCATTTTTATCACTTGCAAATTCATACAATGGTCCCTTAAGCCATCACG
518 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
6589647 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTC-ATTT
583 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTC
** * * *
6589711 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGGCCAAAACTTGGTAAACGTGATCCTTGTAT
647 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* **
6589776 TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTT
712 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
6589841 GAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGTAGCAAACCTGTAAAATCTCAAAT
777 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * * *
6589906 GCTCTTTAAGAGAGTGTGAGTTCTTGGGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCC
842 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
6589968 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * * * *
6590033 AATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGTCCCGACAAAGAAAAATGCGGC
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * *
6590098 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGA
131 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
6590163 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ** *
6590228 CGTGCAGTCGCTCAGTCGGCCAGAAGGGCAAGACGCGCAAGCC-GGGGATCGGTCGGGTCCCCCT
261 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCCT
* * * * * *
6590292 CTGCGTGCTGCCAATCTTGCTGCCACAACCCTCGAT-TCGGTCCGATCTTAGACTGGGAATGAAC
326 CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAAC
6590356 TCCGTATGCCTAAGCCAACCGACG--A--A---------A------C--G----A-G-CGG---G
390 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAG
*
6590391 AGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
455 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** *
6590456 TCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
520 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
6590521 AAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTGGGG
585 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
** * *
6590586 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTT
650 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
** **
6590651 TGTTGGCATGCACAAAGGAATTCAGCTAAAAACTCGTGGTGTACAAGATTTTGTGACCATTTGAA
715 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
6590716 AAAAGTGTCCCCATTTTAGACTA-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGC
780 AAAAGTGTCCCCATTTCAGAC-ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
6590780 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCC
844 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
6590840 AAGTACCAGCACCCGTCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCACCGAAACCCC
1 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * *
6590905 AATGCCGTCGGTCAGGTTCTCTGACGATGCTCCTAG-GATGGTGCCCCGACGAAGAAAAATGCGG
66 AATGTCGCCGGTCAGGTTCTCCGACGATGCTCC-GGCGATGGTGCCCCGACGAAGAAAAATGCGG
* ** * * ** * * *
6590969 CACCAACACATGCCTAAGCCTAGCTTGTGCTGTTGTAACCCTCGATCCGATCCTG-TCTTAGACT
130 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCC-GATCTTAGACT
* * *
6591033 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCGACGAAAT
194 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAAC
6591098 GAGCG
258 GAGCG
6591103 GGTGGGAAGG
Statistics
Matches: 11830, Mismatches: 1443, Indels: 572
0.85 0.10 0.04
Matches are distributed among these distances:
863 148 0.01
864 172 0.01
865 6 0.00
866 31 0.00
867 96 0.01
868 201 0.02
869 225 0.02
870 5 0.00
871 248 0.02
872 1188 0.10
873 345 0.03
874 17 0.00
875 400 0.03
876 1130 0.10
877 883 0.07
878 114 0.01
879 87 0.01
880 5 0.00
881 12 0.00
882 3 0.00
883 4 0.00
884 4 0.00
885 3 0.00
886 457 0.04
887 36 0.00
888 379 0.03
889 17 0.00
890 184 0.02
891 4 0.00
892 5 0.00
893 342 0.03
894 905 0.08
895 50 0.00
896 226 0.02
897 1078 0.09
898 285 0.02
899 198 0.02
900 478 0.04
901 120 0.01
902 84 0.01
903 1191 0.10
904 426 0.04
905 38 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
AATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCGGGTCCCCCT
CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
Found at i:6583071 original size:26 final size:26
Alignment explanation
Indices: 6583042--6583094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6583032 CTGGTCCGAT
*
6583042 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
6583068 CTTAGACTTGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
6583094 C
1 C
6583095 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:6583973 original size:26 final size:25
Alignment explanation
Indices: 6583940--6583991 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
6583930 CTGGTCCGAT
6583940 CTTAACTGGGAATGAACTCCGTATG
1 CTTAACTGGGAATGAACTCCGTATG
6583965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTA-ACTGGGAATGAACTCCGTATG
6583991 C
1 C
6583992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCCGTATG
Found at i:6584874 original size:26 final size:26
Alignment explanation
Indices: 6584838--6584888 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6584828 CTGATCTGAT
6584838 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
6584864 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
6584889 GCTAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:6588408 original size:26 final size:26
Alignment explanation
Indices: 6588379--6588431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6588369 CCGATCCGAT
*
6588379 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6588405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6588431 C
1 C
6588432 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6590192 original size:26 final size:26
Alignment explanation
Indices: 6590153--6590205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6590143 CCAGTCTGAT
6590153 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
6590179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6590205 C
1 C
6590206 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:6591061 original size:26 final size:26
Alignment explanation
Indices: 6591025--6591077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6591015 CCGATCCTGT
*
6591025 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6591051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6591077 C
1 C
6591078 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6591806 original size:26 final size:26
Alignment explanation
Indices: 6591770--6591820 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6591760 CCCACCGAAT
6591770 CTTAGACTGGGAATGAACTCCATATA
1 CTTAGACTGGGAATGAACTCCATATA
*
6591796 CTTAGACTGGGAATGAACTTCATAT
1 CTTAGACTGGGAATGAACTCCATAT
6591821 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:6591827 original size:745 final size:745
Alignment explanation
Indices: 6590391--6591831 Score: 2215
Period size: 745 Copynumber: 1.9 Consensus size: 745
6590381 AACGAGCGGG
*
6590391 AGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
6590456 TCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCACTTAAGCCTTCACGTG
* * * *
6590521 AAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTGGGG
131 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTGGGG
* *
6590586 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTT
196 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGAAGACATGATCCCTGTATTTT
** * ** *
6590651 TGTTGGCATGCACAAAGGAATTCAGCTAAAAACTCGTGGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTCAA
* *
6590716 AAAAGTGTCCCCATTTTAGACTATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCT
326 AAAAGTGTCCCCATTTCAGACTATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
6590781 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* **
6590846 CAGCACCCGTCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCACCGAAACCCCAATGCC
456 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCACCGAAACCCCAATGCC
* * * * *
6590911 GTCGGTCAGGTTCTCTGACGATGCTCCTAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
521 GCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
* * * * *** * *
6590976 ACATGCCTAAGCCTAGCTTGTGCTGTTGTAACCCTCGATCCGATCCTGTCTTAGACTGGGAATGA
586 ACATACCCAAGCCCAGCATGTGCTGTCACAACCCTCGACCCCATCCTGTCTTAGACTGGGAATGA
* * * *
6591041 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCGACGAAATGAGCGGGT
651 ACTCCATATACTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCGACGAAATGAGCGGGT
6591106 GGGAAGGCGGGCGGGCACTACGCCGATGAA
716 GGGAAGGCGGGCGGGCACTACGCCGATGAA
*
6591136 AGAGATGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
6591201 TTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCATTTAAGCCTTCACGTG
66 TCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCACTTAAGCCTTCACGTG
* * *
6591266 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGG
131 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTGGGG
* * *
6591331 ATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGAAGACATGATCCCTGTATTTT
* * *
6591395 TGTTGGCATGCACAAAAAAATTTAGCTGAAAACCCGAAGTGTGCAAGATTTTGTGACCATTTCAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTCAA
* * **
6591460 ATAATTGTCGTCATTTCAGAC-ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAGTGTCCCCATTTCAGACTA-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
6591524 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * *
6591589 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCTCGATCGTCGGAACCTCAGTG
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCC-CGATCACCGAAACCCCAATG
* * *
6591654 CCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCA
519 CCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * *
6591719 GCACATACCCGAGCCCAGCATGTGCTGTCACAACCCTCGGCCCCA-CC-GAATCTTAGACTGGGA
584 ACACATACCCAAGCCCAGCATGTGCTGTCACAACCCTCGACCCCATCCTG--TCTTAGACTGGGA
*
6591782 ATGAACTCCATATACTTAGACTGGGAATGAACTTCATATGCCTAAGTCAA
647 ATGAACTCCATATACTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
6591832 CCCCCGAAAC
Statistics
Matches: 625, Mismatches: 67, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
743 2 0.00
744 261 0.42
745 362 0.58
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (745 bp):
AGAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCACTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTGGGG
ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGAAGACATGATCCCTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTCAA
AAAAGTGTCCCCATTTCAGACTATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCACCGAAACCCCAATGCC
GCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
ACATACCCAAGCCCAGCATGTGCTGTCACAACCCTCGACCCCATCCTGTCTTAGACTGGGAATGA
ACTCCATATACTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCGACGAAATGAGCGGGT
GGGAAGGCGGGCGGGCACTACGCCGATGAA
Found at i:6594461 original size:26 final size:26
Alignment explanation
Indices: 6594431--6594486 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6594421 TCGGTTGGCT
*
6594431 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6594457 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6594483 TAAG
1 TAAG
6594487 ATCTGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6595207 original size:26 final size:26
Alignment explanation
Indices: 6595177--6595229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6595167 GTTGGCTTAG
*
6595177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6595203 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6595229 G
1 G
6595230 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6595269 original size:743 final size:738
Alignment explanation
Indices: 6593707--6595942 Score: 3319
Period size: 743 Copynumber: 3.0 Consensus size: 738
6593697 GGGCTTGACC
* * *
6593707 TAGGCATAC-GAGTTCACTCCTCAGTCTAAACATATGCGAGTTCATTTCCAGTCTAAGATCGGAC
1 TAGGCATACGGAGTTCATTCC-CAGTCTAAGCATA--CGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
6593771 AGA-CGAGGGTT--GGCAGAAACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTT-TTCGT
63 GGACCGAGGGTTGCGGCA-ACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCAT
* * *
6593832 CGAGG-CACCATC-AC-AAG-A------AGAACCTGACGACGC-GCATTGGGGTTTCGACGATCC
127 CG-GGTCACCATCGCCGAAGCATCTCGGAGAACCTGACCA-GCAGCATTTGGGTTTCGACGAT-C
* * * * * *
6593886 AGGG-GCCCGGGGGAGTGTGC-C-TA-GATGTGCGATGGCGTGCTGGTACTGGGCCCTTATATGG
189 AGGGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG-GTGCTGGAACTTGGCCCTTATATCG
6593947 GCCCCCTATCTCCTCATCAAACCTCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
253 GCCCCCTATC-CCTCATCAAACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
6594012 AGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAA
316 AGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
6594077 TCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCC-AAAAAAATACAAGGATCACG
381 TCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* *
6594141 TTCTACCAAGTTTGGGGCC-AAAATCCTTCCAAAAAAATTTTTAAAAATCTCGAA-CGTAAAGAG
446 -TCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
*
6594204 TTTTGAAAATCGTGAAAAATAG-AACGAGTCGTCTTGCCATGAAGATTTCACGTGAATGCTTAAG
510 TTTTGAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCCATGAAGACTTCACGTGAATGCTTAAG
* **
6594268 GGACCATTGTATGAA-TTACAAGCCATAAAAATGGCTTTGTTACGTAGAAATATGAAGATGTGCC
575 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
** ** *
6594332 TAAACCCACCTATAACCCTATCGATCCACGGCTTGCATATCCCGTCTCTCTAGCCAGCGTAGTGC
640 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGC
*
6594397 CCACCCGCCCACTCTCTCGTTTCATCGGTTGGCT
705 CCACCCGCCCACTCGCTCGTTTCATCGGTTGGCT
* * *
6594431 TAAGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGA-CG
*
6594496 GACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCATCG
64 GACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCATCG
6594561 GGTCACCATCGCCGAAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAGGG
129 GGTCACCATCGCCGAAGCATC-TCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAGGG
6594626 TGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCCCC
193 TGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCCCC
*
6594691 CTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT
258 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT
*
6594756 CTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTG
323 CTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
6594821 CACTTCGAGTTTTTACCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCTAC
388 CACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCC--AAAAAAAATACAAGGATCACGTCTAC
*
6594886 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGA
451 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGA
*
6594951 AAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAGA-TTCACGTGAATGCTTAAGGGACC
516 AAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAGACTTCACGTGAATGCTTAAGGGACC
*
6595015 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
580 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
6595080 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCAGCATAGTGCCCGCC
645 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACC
*
6595145 CGCCCACTGGCTCGTTTCATCGGTTGGCT
710 CGCCCACTCGCTCGTTTCATCGGTTGGCT
*
6595174 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGATTTCATTCCCAGTCTAAGATCGGACCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGA-CG
6595239 GACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCATCG
64 GACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCATCG
* *
6595304 GGTCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCAGCATTTGGGTTTCGACGATCAGGG
129 GGTCACCATCGCCGAAGCATC-TCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAGGG
* * * *
6595369 TGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGAACCTGGCCCTTATATCGGACCC
193 TGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCCCC
6595434 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT
258 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT
* *
6595499 CTGCCTGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTA
323 CTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** *
6595564 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACGTCTATCA
388 CACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
** ** * *
6595629 AGTTT-GGGCCAAAAATATTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTTGAAA
453 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAA
* *
6595693 ATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCAT
518 ATCGTGAAAAATAGA-AACGAGTCGTCTTGCCATGAAGACTTCACGTGAATGCTTAAGGGACCAT
* * * *
6595757 TGTATGAATTTACAAGGCATAAAAACT-GCATTGGCATGCAGAAATAGGAAGATGTGCCTAAACC
582 TGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
*
6595821 CACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTG-CCACC
646 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCACC
* * * **
6595884 CGCCCTCCCGCTCATTTTTTCGGTTGGCT
710 CGCCCACTCGCTCGTTTCATCGGTTGGCT
*
6595913 TAGGCATATGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG
6595943 ATTGGATTGG
Statistics
Matches: 1379, Mismatches: 98, Indels: 55
0.90 0.06 0.04
Matches are distributed among these distances:
722 1 0.00
723 24 0.02
724 22 0.02
725 18 0.01
726 37 0.03
727 17 0.01
728 1 0.00
729 3 0.00
730 1 0.00
736 7 0.01
737 185 0.13
738 14 0.01
739 110 0.08
740 283 0.21
741 61 0.04
742 33 0.02
743 562 0.41
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (738 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACGGA
CCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCATATTTTTCTTCATCGGG
TCACCATCGCCGAAGCATCTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAGGGTGG
CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTG
CCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATC
GTGAAAAATAGAAACGAGTCGTCTTGCCATGAAGACTTCACGTGAATGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCA
CTCGCTCGTTTCATCGGTTGGCT
Found at i:6596110 original size:26 final size:26
Alignment explanation
Indices: 6596074--6596126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6596064 GTTGACCTAG
*
6596074 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTATAA
6596100 GCATATGGAGTTCATTCCCAGTATAA
1 GCATATGGAGTTCATTCCCAGTATAA
6596126 G
1 G
6596127 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTATAA
Found at i:6597900 original size:26 final size:26
Alignment explanation
Indices: 6597870--6597922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6597860 GTTGACTTAG
6597870 GCATACGCAATTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
* * *
6597896 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
6597922 G
1 G
6597923 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAATTCATTCCCAGTCTAA
Found at i:6598805 original size:26 final size:26
Alignment explanation
Indices: 6598768--6598820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6598758 GTTGACTTAG
6598768 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
* *
6598794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
6598820 G
1 G
6598821 ATTCGGTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:6599158 original size:887 final size:888
Alignment explanation
Indices: 6596977--6599444 Score: 3079
Period size: 888 Copynumber: 2.7 Consensus size: 888
6596967 GTTGACTTAG
* ** *
6596977 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGAATGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGG--GGACTGAGGGTTGCAACAGCACATGCTGGG
* * *
6597042 CTCAAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGA
64 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T----GCATCG-CGGAGA
* * * *
6597107 ACACGGACCGGCAGCATTGGGGATTTCGTACGATCGGGGTGGCTGGAGGGGTGTGCGCAACATGA
121 AC-CCGACCGGCGGCATTGGGG-TTCCG-ACGATCGGGG-GGCAGG-GGGGTGTGCGC-ACATGA
* * * *
6597172 -G-GCCGATGGGTGCTGGAACCTGGCCC-TATAATCGGCCCCCTATTCCCTTATCAAATCCTCGA
180 TGTG-CGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTA-TCCCTCATCAAA-CCTCGA
* * *
6597234 TAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-TACAGGTTGGTTCTGGCCAGCAGCCATTT
241 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA-A-GTT--TGCT-GCCAGCAG-CAATT
* *
6597298 AAAGTATCTGAAATGGGAACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTT
300 AAAGTGTCTGAAATGGG-ACA-CTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTT
* *
6597363 AGCTGAATTTTTTTTAATGCATGCCAACCAAAAATACGAAGGATCACGTCTATCAAGTTTGGGCC
362 AGCTGAA-TTTTTTT-GTGCATGCCAA-CAAAAATAC-AAGGATCACGTCTATCAAGTTTGGGGC
* * * * * *
6597428 CAAAAATCCTTCTGAAAAAATTTT--AAAATCCTGAACCGCAAACGTTTTCGGAAAAGCATG-AA
423 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAC-ATTTC-GAAAATCGTGAAA
* * *
6597490 AATAAGAGAACGATGTCGTCTTTGCCATGAAACTTCAGGTGAAGGCTTAA-AGACCTTTGTATGA
486 AAT-AGAGAACGA-GTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6597554 ATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACTCACCTACC
548 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
6597619 -CCCTATCAATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCC
613 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCTGCCCGCCC
** * *
6597683 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGACAAG
678 G-CT-CTCGTTTCAACGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGGACAAG
* ** * * * **
6597748 ACCGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTAGCG
741 ACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTAGCG
* *
6597813 CATCCCGCCCCTCTGGCCAGCTGAGCGCTCACACACTCGTTTCATGGGTTGACTTAGGCATACGC
806 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCACACACTCGTTTCAGGGGTTGACTTAGGCATACGC
*
6597878 AATTCATTCCCAGTCTAA
871 AATTCACTCCCAGTCTAA
* **** *
6597896 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-G-GGGGACTGAGGGTTGCAACAGCACATGCTGGG
* *
6597961 CTCAGGCATGTGCTGGTGCTGCATTTTTGTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
64 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-------GCATCG-CGGAGA
* * *
6598026 ACCCGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGG
121 ACCCGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CAGGGGGGTGTGCGCACATGATGTGC
* * * *
6598091 GATGGGTGATGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGCA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
6598156 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGCAGCAATTAAAGTGTCTGAAATG
* *
6598221 CGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGG
315 -GGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
6598286 GCATGCCAACAAAAATACAAGGATCACGTGTATCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
378 GCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
*
6598351 TTTTAAAAAATCCCGAACCGTAAAACATTTCGAAAATCGTGAAAAATAGAGAACGAGTGGTCTTG
443 TTTTAAAAAATCCCGAACCG-AAAACATTTCGAAAATCGTGAAAAATAGAGAACGAGTCGTCTTG
* * *
6598416 CCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAG-CTTAAAAATTGCA
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCA
* *
6598480 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
571 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
**
6598545 CATCCCGTCTCTCTGGCCGGTATAGTGCCCACCTGCCCGCCCG-T-TCGTTTCAACGGTTAGCTT
636 CATCCCGTCTCTCTGGCCGACATAGTGCCCACCTGCCCGCCCGCTCTCGTTTCAACGGTTAGCTT
** * *
6598608 AGGCATACAGAGTTCATTCCCAGTCTAAGATCA-GACTGGATCAAGGGTTACGGTAGTAGGATCG
701 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGGACAAGACCAAGGGTTACGGTAGCAGGATCG
* * * * * *
6598672 GCATCACGCAGATGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
766 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCAGCTGAG
*
6598737 CGCCCGCACACTCGTTTC-GGGGTTGACTTAGGCATACG-AAGTTCACTCCCAGTCTAA
831 CGCCCACACACTCGTTTCAGGGGTTGACTTAGGCATACGCAA-TTCACTCCCAGTCTAA
*
6598794 GCATACGGAGTTCATTCCCAGTCTAAGATTCGGTGGGGCTGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGG-GGGACTGAGGGTTGCAACAGCACATGCTGGG
* * * * *
6598859 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCAT-CA-C-CGGAGAACCTGATC
64 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGCATCGCGGAGAACCCGACC
*
6598921 GGCGGCATTGGGGTTCCGATGATCGAGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
129 GGCGGCATTGGGGTTCCGACGATCG-GGGGG-CAGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
6598986 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACA-CCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
6599050 AAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGCAGCAATTAAAGTGTCTGAAATGATGACAA
257 AAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGCAGCAATTAAAGTGTCTGAAATG-GGACAC
*
6599115 TTATTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
321 TT-TTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * **
6599180 AACAAAATTACAAGGATCACGTCT-TCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTAAAA
385 AACAAAAATACAAGGATCACGTCTAT-CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT-TTA
* * *
6599244 AAAAAACCCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
448 AAAAATCCCGAACCG-AAAACA-TTTCGAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCAT
* * *
6599308 GAAACTTCACGTAAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
511 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * * * * *
6599373 ACACATAAATATGAAGATGCGCCTTAACCCACCTACCACCCAATTGATCCACGACTTTCGCATCC
576 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
6599438 CGTCTCT
641 CGTCTCT
6599445 TTTGTCGGCG
Statistics
Matches: 1367, Mismatches: 154, Indels: 87
0.85 0.10 0.05
Matches are distributed among these distances:
886 1 0.00
887 214 0.16
888 268 0.20
889 1 0.00
890 2 0.00
897 2 0.00
898 128 0.09
899 96 0.07
900 48 0.04
902 28 0.02
903 121 0.09
904 87 0.06
905 31 0.02
906 11 0.01
907 18 0.01
908 49 0.04
909 9 0.01
910 3 0.00
912 3 0.00
913 38 0.03
914 18 0.01
915 43 0.03
916 18 0.01
917 3 0.00
918 17 0.01
919 109 0.08
920 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGGGGACTGAGGGTTGCAACAGCACATGCTGGGCT
CAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGCATCGCGGAGAACCCGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTATAAGTTTGCTGCCAGCAGCAATTAAAGTGTCTGAAATGGGACACTTTTT
TAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGAAAACATTTCGAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACATAGTGCCCACCTGCCCGCCCGCTCTCGTTTCAACGGTTAGCTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGGACAAGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGG
GGACCCGACCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACACACTCGT
TTCAGGGGTTGACTTAGGCATACGCAATTCACTCCCAGTCTAA
Found at i:6599532 original size:26 final size:26
Alignment explanation
Indices: 6599502--6599554 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6599492 GTTGACTTAG
*
6599502 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6599528 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6599554 G
1 G
6599555 ATAGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6600149 original size:745 final size:733
Alignment explanation
Indices: 6598758--6600272 Score: 2207
Period size: 745 Copynumber: 2.1 Consensus size: 733
6598748 TCGTTTCGGG
* *
6598758 GTTGACTTAGGCATACGAAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** ** * *
6598823 TCGGTGGGGCTGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
66 TAGGCCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
6598888 TTCATCGAGGCACCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGAGGGGGT
131 TTCATCGAGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGAGGGGGC
*
6598953 CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCAT
* * *
6599018 CCCTCATCAAACCTCGAGAGCTCACACCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCC
261 CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTGCC
* *
6599083 AGCAGCAATTAAAGTGTCTGAAATGATGACAATTATTTTAAATGGTCACAAAATCTTGTACACTT
326 AGCAGCAATTAAAGTGTCTGAAATGAGGACAATTATTTTAAATGGTCACAAAATCTTGTACACAT
* * * *
6599148 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTTCCAAGTTT
391 CGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
6599213 GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCG
456 GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAAACCCCAACCGCAAAAAGTTTCAAAAATCG
*
6599278 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTAT
521 TGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTAT
* *
6599343 GAATTTACAAGCCAAAAAAATGGCATTGGCACACATAAATATGAAGATGCGCCTTAACCCACCTA
586 GAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGCGCCTAAACCCACCTA
* * * * **
6599408 CCACCCAATTGATCCACGACTTTCGCATCCCGTCTCTTTTGTCGGCGTAGTGCCCGCCCGCCTTC
651 CCACCCAATCGATCCACGACTTGCGCATCCCGTCTC-TCTGCCGGCGTAGTGCCCGCCCGCCAGC
*
6599473 -CAACCCGCTCGTTTCATCA
715 GC-ACCAGCTCGTTTCATCA
* *
6599492 GTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGA-
1 GTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
6599556 TAGGACCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TAGG-CCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
6599621 CTTCGTCGGGGCACCATCCCCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTTCGGT
130 CTTCATCGAGGCACCAT---C--A-C--CG---GAGAACCTGACCGGCGGCATTGGGGTTCCGAT
* * *
6599686 GATCG-GGGGGCCCGAGGGGGTGTGTGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTAT
184 GATCGAGGGGGCCAG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
6599750 ATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTT
248 ATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTCGAGATTTT
* * * * *
6599815 ACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTGAAATGGGGACACTT-TTTTCAAATGGTCAC
312 ACAAGTTTGCTGCCAGCAGCAATTAAAGT-GTCTGAAATGAGGACAATTATTTT-AAATGGTCAC
*
6599878 AAAATCTTGTACACCAT-GAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAAAAATACAAGGA
375 AAAATCTTGTACA-CATCGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGGA
* * * ** * *
6599942 TCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAATT-TTAAAAAATCCCCAATCGCA
439 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAAACCCCAACCGCA
* *
6600006 AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGC
504 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTAAAGGC
* * * *
6600071 TTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAT
569 TTAAGGCACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * *
6600136 GTGCGTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGCTTA
634 GCGCCTAAACCCACCTACCACCCAATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGCGTA
* *
6600201 GTGCCCGCCCGCCAGCGCGCCAGCTCGTTTCATCG
699 GTGCCCGCCCGCCAGCGCACCAGCTCGTTTCATCA
*
6600236 GTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAG
6600273 ATCAGACCAA
Statistics
Matches: 695, Mismatches: 68, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
733 3 0.00
734 130 0.19
737 1 0.00
739 1 0.00
740 1 0.00
742 2 0.00
744 78 0.11
745 308 0.44
746 169 0.24
747 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (733 bp):
GTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
TAGGCCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCATCGAGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGAGGGGGC
CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCAT
CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTGCC
AGCAGCAATTAAAGTGTCTGAAATGAGGACAATTATTTTAAATGGTCACAAAATCTTGTACACAT
CGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAAACCCCAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTAT
GAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGCGCCTAAACCCACCTA
CCACCCAATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCAGCG
CACCAGCTCGTTTCATCA
Found at i:6600434 original size:26 final size:26
Alignment explanation
Indices: 6600405--6600457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6600395 GTTGACTTAG
6600405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6600431 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6600457 G
1 G
6600458 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6601340 original size:26 final size:26
Alignment explanation
Indices: 6601304--6601356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6601294 GTTGACCTAG
6601304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6601330 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6601356 G
1 G
6601357 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6601538 original size:899 final size:898
Alignment explanation
Indices: 6599478--6604735 Score: 6930
Period size: 899 Copynumber: 5.9 Consensus size: 898
6599468 CCTTCCAACC
* ** * *
6599478 CGCTCGTTTCATCAGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * * *
6599543 TCCCAGTCTAAGATAGGACCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
6599608 GTGCCGCATTTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGTCAGAGAACCTGACCGGCGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* ** * *
6599673 TTGGGGTTTCGGTGATCG-GGGGGCCCGAGGGGGTGTGTGCACATGATGTGGGATGGGTGCTGGT
196 TTGGGGTTCCGACGATCGAGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
6599737 ACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
6599802 CATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTGAAATGGGGACACTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTTTT
* * *
6599866 TCAAATGGTCACAAAATCTTGTACACCAT-GAGTTTTTAGCTGAATTCTTTTATGCATGCCAACA
388 TCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
6599930 AAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
452 AAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
6599995 CCCCAATCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTT
517 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
6600060 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACATAGA
582 CACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* *
6600125 AATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
6600190 CT-GCCGGCTTAGTGCCCGCCCGCCAGCGCGCCAGCTCGTTTCATCGGTTGGCTTAGGCATACGG
712 CTGGCCGGCGTAGTGCCCGCCCG-C--C-CGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * *** * *
6600254 AGTTCAATCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
772 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * ** * *
6600319 AGGGGGACCCGGTCAATCCTCGGCTTGCGCATCCTGCCTTTCTGGTCGACTGAGCGCCCGCA
837 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
6600381 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * *
6600446 TCTCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
** * * ** * * *
6600511 GTGCCATATTTTTCTTTGTAGGAACACCATCACTGGAGCATCGTCGAAGAACCTGACCGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
6600576 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
6600641 CGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
6600706 ATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACCTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
6600771 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
6600836 ATACAAGGATCACGGCTATCAAGGTT-GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC
455 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
6600900 GAACCGCAAAACA-TTTCGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCA
520 GAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * **
6600964 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAACT-ACATTTGCATGCAGAA
584 CGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACACAGAA
* *
6601028 ATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTC
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
6601093 TGGCCGACGTAGTGCCCACCCGCCCGTTCGCTCGTTTTCGTCGGTTAGCTTAGGCATACGGAGTT
713 TGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
6601158 CATTCCTAGTCTAAGATTGGATTGGACCAAGGGTTGCAGCAGCAGGATCGACAGCATGTAGAGGG
776 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
*
6601223 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
841 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
6601281 CGCTTGTTT-GTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * *
6601345 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
6601410 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGAACCTGACCGACCGCC
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
6601475 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGAGCACATGATATGCGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
6601540 CTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAAAACTCACA-CCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
6601604 ATTTGAGATTTTACAGGTTTGCGGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
6601669 AAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-AGCATGCCAACAA
390 AAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAA
*
6601733 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * *
6601797 TCGAACCGTAAAAAGTTTTGAAAATCGTGAAAACTGGAAAACGAGTCGTCTTGCCATGAAACTTC
518 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
6601862 ACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAGA
583 ACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGA
* *
6601927 AAAATGAAGATGTGCCTAAACCC-CGCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTC
647 AATATGAAGATGTGCCTAAACCCAC-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
6601991 TCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
711 TCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * *
6602056 TCATTCCCAGTCTAAGATGGGACCAGACCAACGGTTGCGGCAGCAGGATCGATAGCACGTAGAGG
775 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
** * *
6602121 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCCTGCA
840 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
6602180 CGCTCATTTCATGGGTTGAC-T-----TA--G-G--------CA----AA-C----GGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * *
6602219 TCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * *
6602284 GTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGCGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
6602348 TTGGGGTTCCG--G--CGA-----TCGGGGGGTGTGCGCACATGGTGT-CTGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTGGTA
* *
6602403 CTTGGCCCTTATATTGGACCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
6602468 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
6602533 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GGTAGAATGTTTTTGTGCATGCCAACAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAA
* * * ** *
6602597 AATACAAGGATCACGTCTAACAATTTTGGGGCCAAAACTCATTCTAAAAAAATTTTTAAAAATCC
454 AATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
6602662 CGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
519 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
6602727 CGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
584 CGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
6602792 TACGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
6602857 GGCCGGCGTAGTGCCCGCCTGCCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAAA
714 GGCCGGCGTAGTGCCCGCC--CGC-CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AG
* *
6602922 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAG
774 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* *
6602987 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCACA
839 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
6603047 CGCTCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* *
6603112 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
6603177 GTGCTGCATTTTTGTTCGTCGGGGCACCAT--TCGGAGCATC--CGGAGAACCTGACCGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * *
6603238 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGGGATGGGTGATGGTAC
196 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
6603303 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
6603368 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
6603433 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
6603498 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCG
456 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
6603563 AACCGCAAAACA-TTTCAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCAC
521 AACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
** * **
6603627 AG-GAAGGCTTAAGGGACCATTGTATGAATTTACAAAG-TGT-AAAATTGCATTGGCATGCAGAA
585 -GCGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACACAGAA
* *
6603689 ATATGAAGA-GTTGCCTAAACCCACCTACCACCCTATCGATACACAGCTTGCGCATCCCGTCTCT
648 ATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** *
6603753 CTGGCCGGCGTAGTACACACCCGCGCTCG-CGC-CGTTTCGT-AATTGGC-TAGGCAATA-AGAG
712 CTGGCCGGCGTAGTGCCCGCCCGC-C-CGCCGCTCGTTTCGTCGGTTGGCTTAGGC-ATACGGAG
* ** * * *
6603813 TTCATTCCGCAGTCTAAGATCAGACTGGACTCGAGGGTTGTAAG-AGCAAGATCGGCAAGCATGC
774 TTCATTCC-CAGTCTAAGATCGGACTGGAC-CGAGGGTTG-CGGCAGCAGGATCGAC-AGCACGC
* * ** * * *
6603877 AGA--GGGAACTGACCGATCCCTGGCTTGCGCAT-ACGCCCCTCTGGCCGGCTGAGC-ACCGCA
835 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * *
6603937 CACTTGTTTCGAAGGGGGGTTTAAAAAACTTTTAGGCATATGAAGGTTCATTCCCAGTCTAAG-A
1 CGCTCGTTTC----GTGGG-TT----GAC--TTAGGCATACGGA-GTTCATTCCCAGTCTAAGCA
* ** * * *
6604001 TA-CGAGTTTCATTCCCAGTCTAAGATTCGG-TGGGGCCG-GGGTTGCGAC-GGA-ACGCTGGGC
54 TATGGAG-TTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGC
* * ** * *
6604061 TCGGGGTATGTGCGTGGTGCCCCATTTTTC-TCACCGGGGCACCATCGTCCGGAGCATC-ACCGA
117 TC-GGGCATGTGC-TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CCGGAGCATCGTCGGA
* * *
6604124 GAACCTAATCGGCGGCATTGGGCGTTTCCGACGATCGAGGGGGCC-GGGGGTGTGCGCACATGAT
179 GAACCTGACCGACGGCATTGGG-G-TTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGAT
6604188 GTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
242 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
6604252 CACACCCCCTTAAAGAGCA-TTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGA
307 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * * * *
6604315 AATGACGACAATTATTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAGCT-AAATTT
372 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTT
* *
6604379 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCT-TCCAAGTTT-GGGCCAAAACCTCCTTCC
436 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAT-CAAGTTTGGGGCCAAAA-CTCCTTCC
* * *
6604442 -AAAAAATTTTAAAAAAACCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
499 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
6604506 CGTCTTGCCCATGAAACTTCACGCGAAGGCTTAAAGGGACCATTGTATGAATTTACAAGCCATAA
564 CGTCTTG-CCATGAAACTTCACGCGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
6604571 AAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACTCACCTACCA-CCTATCGATCCAC
627 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
6604635 -GCTTCCGCATCCCGTCTCTTTCGTCGGCGTAGTGCCCGCCCGCTTCCCACCCGCTCGTTTCGTC
692 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG---CCC-GCCGCTCGTTTCGTC
*
6604699 GG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
753 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
6604736 CATACGGAGT
Statistics
Matches: 3857, Mismatches: 383, Indels: 228
0.86 0.09 0.05
Matches are distributed among these distances:
862 11 0.00
863 256 0.07
864 203 0.05
865 2 0.00
866 37 0.01
867 129 0.03
868 1 0.00
869 3 0.00
871 1 0.00
873 31 0.01
874 105 0.03
876 1 0.00
878 1 0.00
879 2 0.00
883 2 0.00
884 2 0.00
888 2 0.00
889 1 0.00
890 42 0.01
891 41 0.01
892 52 0.01
893 122 0.03
894 25 0.01
895 5 0.00
896 4 0.00
897 3 0.00
898 186 0.05
899 1006 0.26
900 385 0.10
901 224 0.06
902 297 0.08
903 565 0.15
904 52 0.01
905 42 0.01
906 16 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
CGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:6603100 original size:26 final size:26
Alignment explanation
Indices: 6603071--6603123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6603061 GTTGACTTAG
6603071 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
* *
6603097 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
6603123 G
1 G
6603124 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:6604745 original size:26 final size:26
Alignment explanation
Indices: 6604709--6604761 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6604699 GGTGACTTAG
6604709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6604735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6604761 G
1 G
6604762 ACAGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6605639 original size:26 final size:26
Alignment explanation
Indices: 6605603--6605655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6605593 GTTGACTTAG
6605603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6605629 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6605655 G
1 G
6605656 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6607432 original size:26 final size:26
Alignment explanation
Indices: 6607377--6607432 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
6607367 TTGGTTGACT
* *
6607377 TAAGCATACGGAGTTCATTCCCAGTA
1 TAAGCATACGGAATTCATTCCCAATA
* * *
6607403 TAAGCATATGGAATTCATTGCCAATC
1 TAAGCATACGGAATTCATTCCCAATA
6607429 TAAG
1 TAAG
6607433 ATTGTACTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAATTCATTCCCAATA
Found at i:6608442 original size:26 final size:26
Alignment explanation
Indices: 6608406--6608458 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6608396 GTTGACTTAG
6608406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6608432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6608458 G
1 G
6608459 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6609330 original size:26 final size:26
Alignment explanation
Indices: 6609294--6609346 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6609284 GTTGACTTAG
6609294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6609320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6609346 G
1 G
6609347 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6610233 original size:26 final size:26
Alignment explanation
Indices: 6610181--6610233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6610171 GTTGACTTAG
*
6610181 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
* *
6610207 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAATATAA
6610233 G
1 G
6610234 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:6611166 original size:170 final size:171
Alignment explanation
Indices: 6610872--6611191 Score: 396
Period size: 170 Copynumber: 1.9 Consensus size: 171
6610862 CCGACGTAGT
** *
6610872 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGACTGGAC
1 GCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGACTAGAC
** * *
6610937 CGGACCGAAGGTTGCGATAGCAAGATCGACAGCACGCAGAGAGGGACCCAGCCGATCCCCGGCTT
66 AAGACCGAAGGTTGCGACAGCAAGATCGACAGCACGCAGAGAGGGACCCAGCCGATCCCCGCCTT
6611002 GTGCATCCTGCCCCTCTGGCCGATGTAGTGCCCGCCCACCC
131 GTGCATCCTGCCCCTCTGGCCGATGTAGTGCCCGCCCACCC
** ** * *
6611043 GCCC-CCCGCTCGTTTCGTCAATTTTCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA-TCAGA
1 GCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGACT-AGA
* * * * *
6611106 CAAGACC-AAGGGTTGCGACAGCAAGATCGATAGTACGTAGAGGGGGACCC-GACTGATCCCCGC
65 CAAGACCGAA-GGTTGCGACAGCAAGATCGACAGCACGCAGAGAGGGACCCAG-CCGATCCCCGC
* * *
6611169 CTTGTGCGTTCTGGCCCTCTGGC
128 CTTGTGCATCCTGCCCCTCTGGC
6611192 TGGCTGAGCG
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
169 4 0.03
170 117 0.94
171 4 0.03
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (171 bp):
GCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGACTAGAC
AAGACCGAAGGTTGCGACAGCAAGATCGACAGCACGCAGAGAGGGACCCAGCCGATCCCCGCCTT
GTGCATCCTGCCCCTCTGGCCGATGTAGTGCCCGCCCACCC
Found at i:6611268 original size:26 final size:26
Alignment explanation
Indices: 6611232--6611284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6611222 GTTGACTTAG
*
6611232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
6611258 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
6611284 G
1 G
6611285 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:6612160 original size:26 final size:26
Alignment explanation
Indices: 6612121--6612173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6612111 GTTGACTTAG
*
6612121 GCATACGGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* *
6612147 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
6612173 G
1 G
6612174 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:6613054 original size:26 final size:26
Alignment explanation
Indices: 6613024--6613076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6613014 GTTGACTTAG
*
6613024 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
6613050 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
6613076 G
1 G
6613077 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:6613123 original size:903 final size:898
Alignment explanation
Indices: 6610989--6622206 Score: 13798
Period size: 869 Copynumber: 12.6 Consensus size: 898
6610979 GGGACCCAGC
* * * * * ** *
6610989 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGATGTAGTGCCCGCCCACCCGCCCCCCGCTC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG---CCCGCTC
** ** * * **
6611054 GTTTCGTCAATTTTCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGT
63 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* ** * * * * * * * * *
6611119 TGCGACAGCAAGATCGATAGTACGTAGAGGGGGACCCGACTGATCCCCGCCTTGTGCGTTCTGGC
128 TGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * *
6611184 CCTCTGGCTGGCTGAGCGCCTGCACGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
193 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ** * * * *
6611249 CCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAAACAGAGGTTTACGGTAGCA
258 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
** * ** **
6611314 CATGCTGGTTTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGATACCATCACCGGAGCAT
323 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
* * ** *
6611379 CACCAGAGAACCTGACCGATGGCATTGAGGTTCCGACGATC-----G--GGGGGGTGTGCGCTCA
388 CGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
* * * *
6611437 AGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAG
453 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
6611502 AAATCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGT
518 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
6611567 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACAGTTTGAGTTTTTAGCTGAAT
583 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * ** *
6611632 TTTTTTTTGCATACCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGATAAAACTCCTTT
648 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
6611697 TGAAAAACTTTTAAAAAATCTCAAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAG
713 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
6611762 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGTCCATTGTATGAATTTACAAGCCATAAA
778 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
6611827 AATGGCATT-G---G-AGAAATATGAAGATGTGCCTAAACCCATCTACCAACCTAT
843 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
6611878 CGATCCACGGCATGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGTCCACCCGCCCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCT
* * **
6611943 CGTTTCGTCGGTTGACTTAGGCAT-TGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGG
62 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
** * * * * * ** *** * * *
6612007 TTGCGGTAGTAGGATTGGTAACATGCAGAGGGGGATTCGGTTGATCCCCGACTTGTGCATCCCTC
127 TTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* ** * *
6612072 CCCTCTGGCCGGTTGAGCGCCCGTGCGTTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATT
192 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * *
6612137 CCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGCTACGGTAGC
257 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* * * * * *
6612202 ACATGATGGACACGGGCATGTGCTGGTGCCGCATTATTCTTCGTCAGGGCACCATCGTCGGAGCA
322 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* * * * *
6612267 TCGCCGGAGAACCTGACCGGTGGCATTGCGGTTCCGACGATCGGGGGCCCCGGGGGGCTATGGGC
387 TCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGG-GCCGGGGGG-TGTGCGC
* * * *
6612332 ACATAATGTGCGATGGGTGCTTGG-GCTTGGCCCTTATATTGGCCCCTTATCCCTCACCAAACCT
450 ACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
6612396 TGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGTCAGTAGCCATTAAA
514 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
6612461 GTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
579 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
**
6612526 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGGCCACGTCTACCAAGTTTGGGGCCAAAACTC
644 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* ** *
6612591 CTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
709 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * * *
6612656 TGAGTCGTCTTGACATGAAACTTCACGTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCA
774 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** * ***
6612721 TAAAAATGGCATTGGCACACAAAAATATGAAGATGTAATTAAACCCACCTACCACCCTAT
839 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ***
6612781 CGATCCACAGCATGCGCATCCCGTCTCTCTGGCCAATGTAGTGCCCACCCGCCCGCCCGCCCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCT
* * * * **
6612846 CGTTTCATCGGTTGACTTAGGCAT-TGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGG
62 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * ** *
6612910 TTGCGATAGTAGGATCGGCAACACGCAGAGGGGGATCCGACCGATCCCCAACTTGTGCATCCCGC
127 TTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * ** * *
6612975 CACTCTAGCCGGTTGAGCGCCCGTGCGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
192 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
6613040 CCAAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGC
257 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* * * * *
6613105 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTATTCTTTGTCGGGGCACCACCATCGGAGCA
322 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* * *
6613170 TCGCCGGAGAACCTGACCGGCGACATTGAGGTTCCGACGATCGGGGGCACCGGTGGGGCTGTGCA
387 TCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGG-GCCGG-GGGG-TGTGCG
*
6613235 CACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCT
449 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * * * *
6613300 CAAGAACTGATACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGTCAGTAGCCATTAAA
514 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
6613365 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
579 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
6613430 GAATTTTTTTGTGCAAGCCAACAAAAATACAAGGGTCACGTCCACCAAGTTTGGGGCCAAAACTC
644 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
6613495 CTTCC-AAAAAGATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAGAAATAGAAA
709 CTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * * * * * *
6613559 ACGAATCGTCTTACCATG-AACTTCACATGATGGCTTACGAGACCTTTGCATGAATTTACATGCC
773 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* ***
6613623 ATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTAATTAAACCCACCTACCACCCTAT
838 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
6613684 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGGCCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCT
* * * *
6613749 CGTTTCGTCGATTGGCTTAGGCATATGGAGTTGATTCCCAGTCTAAGATCAGATCCA-A-TCAAG
62 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACT-GAG
* * ** * * * * * **
6613812 GGTTAC-AGCAGCAGGGTCCACAGCATGCAAAGGGGGACCCGGCCAATCCCCAGCTTATGCATCC
125 GGTTGCGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * *
6613876 TGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTTA-GCATACGAAGTT
189 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTT
** **
6613940 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTATGG
253 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * * * *
6614005 CAACTCATGCTGGCCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACTATCGTCGG
318 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGG
** * * * *
6614070 AGCATCATCGGAGAACCTGACCGGCGACATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTG
383 AGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGGTGTG
* *
6614135 CGCACATGATGTGTGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
447 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
6614200 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
512 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
6614265 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
577 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
6614330 CTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAAC
642 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
6614395 TCCTTTCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
707 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
6614460 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGC
772 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** ***
6614525 CATAAAAAAT-TTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
837 CAT-AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
6614587 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * * ** *
6614652 TTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCACATCGGACCAAGCGTTGC
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * *
6614717 -AGCAGCAAGATCGGTAGCATGCAGAGGGGGACCC-AGCCGATCCCTGGCTTGCGCATCCCGCCC
131 GA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
6614780 CTCTAGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
6614845 CAGTCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGGACCAGATCGAGGGTTGCGACAGCAC
259 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * ** * *
6614909 ATGCTTGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTTACCGGGGTAGCATCGTCGGAGCATC
324 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC
* * * * *
6614974 GCCGGAGAACCTGAACGACGACATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGGTGTGCGCAC
389 GCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCAC
*
6615039 ATGATGT---ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGA
452 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
6615101 GAACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTG
517 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
6615166 TCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAA
582 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * * *
6615231 TTGTTTTGTGCATGCCAACAAAAATAAAAGGATCATGGCTACCAAGTTTGGGTCCAGAACTCCGT
647 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * *
6615296 CTAAAAAAATTTTAAAAAATGCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
712 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
6615361 TTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
777 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
6615426 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTAT
842 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *** *
6615483 TGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGTTTGCTCGCCCGCTCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* *
6615548 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGC
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * * * * * *
6615613 GGCAGCAGGATCGACAACACGTAGAGGGGGACCCGATCGATCCCTGACATGCGCATCCCGCCCCT
131 GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * *
6615678 CTGGCCGGCTAAGCGCCCGAACGCTCATTTCGTGGGTTGAGTTAGGCATACGGAGTTTATTCCAA
196 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
** * * **
6615743 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAACAGCACAT
261 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * ** * * *
6615808 GCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTGTTTACCGGGGTAGCATCGTCGGATCATCGC
326 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGC
* * * * *
6615873 TGGAGAACCTGACCGACGACATTGAGGTTCTGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACA
391 CGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACA
* *
6615938 TGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAG
453 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
6616003 AACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
518 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * * *
6616068 CTGATATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGTAT
583 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
6616133 TGTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCGTC
648 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
6616198 CGAAAAAATTTTAAAAAATCCTGAACTGTAAATTGTTTCAGAAATCGTGAAAAATAGAAAACGAG
713 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
6616263 TCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAA
778 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
6616328 AATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
843 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
6616384 TGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTTGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * *
6616449 TCGTTGGTCGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGTTCAGATCGGA-TCGAGGGTTG
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG
* * * *
6616512 C-AGCAGCAAGATCGGCAGCACGTAGAGGGGGACCC-AGTCGATCCCCGGCTTACGCATCCCGCC
130 CGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCC
6616575 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
193 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
6616640 CCAG--T---C-T--A-AG---------A-TC----A---GACCGGACCGAGGGTTGCGGCTGCA
258 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
** * * ** *
6616679 CATTTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCAGAGCAT
323 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
* * * * *
6616744 CGTCGGAGAACCTGACCGGCGGCACT-AGGGTTCC-AGCTATCGGGGGGGTCGAGGGGTGTGCGC
388 CGCCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGC
* * * *
6616807 ACATAATGTGCGATGGATGCTGGTACTT-GCCCTGATATTGGCCCCCTATCCCTTATCAAACCTC
450 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
6616871 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAG
515 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
6616936 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
580 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
6617001 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCATGTTTGGGGCCAAAACTCT
645 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
6617066 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
710 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
6617131 GAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
775 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * *
6617196 AAAAATGGCATTGGCACGCAAAAATATGAAGATATGCCTAGACGCACCTACCACCCTAT
840 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
6617255 CAATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCGTAATGCCCGCCCGCCCGTCCGCTTGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * *
6617320 TCGTCGATTGGCTTAGGCATACGGAGTTCAGT-CCAGTCTAAGGTCAGACCGGA-TCGAGGGTTG
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG
* * *
6617383 C-AGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
130 CGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* *
6617447 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
6617512 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
259 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-
* * * * *
6617577 GACCAGACCGAGGGTTACGGCAGCACATACTGGGCTTGGGCATGTGCTGGTGTCGTATTTTTCTT
302 G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
6617642 CGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGAT
363 CGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGAT
* *
6617707 CGGGGGGCCGGGGGGTGTGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
428 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
6617772 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGCTTAAAGAGAATTTGAGATTTTACAGGT
493 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
6617837 TTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTT
558 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
6617902 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGATAACATCTA
623 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-
** * * * * *
6617967 AAAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTT
687 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
6618032 GAAAATGGTGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
752 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
6618097 CAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAG
817 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
6618162 CCCACCTACCACCCTAT
882 CCCACCTACCACCCTAT
** * * **
6618179 CGATCCACGGCTTAAGCATCCCGTCTCTCTAGCCGACGTAATGCCTGCCTGCCTGCCCGCCCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TG-C--CC-GCCCGCCCGCC
* ** * * *
6618244 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCATACCG
58 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * * *
6618309 AGGGTTGTGGCAACAGGATCGGCTGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTACGCACC
123 AGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * *
6618374 CCACCCCTCTGGCTGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTCACTTAAGCATGCGGAGTT
188 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
6618439 CATTCCCAGTCTAAGCATACAAAGTTCATTCCTAGTCTATGATTGGACCAGACCGAGGGTTGCGG
253 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * ** *
6618504 CAGCACATGCTGCGCTCGAGCATGTGCTGGTGTCC-CTTTTTTCTTTC-TTGGGGCACCATC-AC
318 CAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTC-TTCGCCGGGGCACCATCGTC
* * * *
6618566 TGGAGCATCGCCGGAGAACCTAACCGACGACATTAAGGTTCCGACGATCGGGGGGCCGGGGGGTG
381 -GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTG
* *
6618631 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTCCTCATCAA
445 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
6618696 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCAT
510 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
6618760 TAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCT
575 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
** * *
6618825 AGCCAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
640 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * ** *
6618890 ATTCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAATATCGTGAAAAATAG
705 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
*
6618955 AAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
770 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
6619020 GCCATAAAAATGGCATTGGCATGCAGAAATATGACGATATGCCTAAACCCACCTACCACCCTAC
835 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
6619084 CGATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCTACCGCCCGCTC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCGCCCGCTC
* * * * *
6619149 ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAAGACCAGACCGAGGGT
63 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* * * ** ** * *
6619214 GGC-AGCAACAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCAACCTGCGCATCCCAC
128 TGCGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * *
6619278 CCTTTTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
192 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
6619343 CTCAGTCTAAG-AT-C-G-G---------A--CT--G-T---ACC--A---AGGGTCGCTGCAGC
257 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* *
6619382 ACGTGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
322 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* * ** * * * *
6619447 TCGTCGGAGAACCCGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTATGCACA
387 TCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCA
* * *
6619512 CATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTG
451 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
6619577 AGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAAGTTTGCTACCAATTGCCATTAAAGT
516 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
**
6619642 GTCTGAAAAAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
581 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
6619707 ATTTTTTTGTACATGCCAA-ATAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
646 ATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** *
6619771 TTCC-AAAATGTTTTTAAAAAATCTCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAA
710 TTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAA
* * *
6619834 ACGAGTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCC
773 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
6619899 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
838 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
6619960 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCTGCTCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* *
6620025 TTGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGC
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * * * * *
6620089 GGCAGTAGGATCGGCAACACACAGAGGTGGACCCGACCGATCACCGTCTTGCGCATCCCGCCCC-
131 GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * *
6620153 CTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGCTTGACTTAAGCATACAGAGTTTATTCCCA
196 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
6620218 GTCTAAGCATAC-GAAGTTCATTTCCAGTCTATGATCCGACCGGACTGAGGGTTGCGACAGCACA
261 GTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
** * * * *
6620282 TATTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAACATCA
325 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG
* * * * *
6620347 CCGGAGAACCTGACTGGCGGCATTG-GGATTCAGGCGATCAGGGGGCCCGGGGGGTGTGTGCACA
390 CCGGAGAACCTGACCGGCGGCATTGAGG-TTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACA
* * *
6620411 TGATGTGTGATGGGTGCTGGTACTTGGCCATTATTTTGGCCCCCTATCCCTCATCAAACCTCGAG
453 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
6620476 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAGTAGCCAATAAAGTGT
518 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
6620541 CTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAAT
583 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
6620606 TTTTTTTTGCATGCCAACAAAAATACAAGGATCTCATCGACCAAGTTTGGGGCCAAAACACCTTC
648 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
6620671 CGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAACCGAG
713 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
6620736 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATTAATTTACAAGGCATAAA
778 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
6620801 AATTGCATTGGCATGAAGAAATATGAAGATGTACCTAAA-CCACCTACCACCCTAT
843 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
6620856 CGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGCCCGTTCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
*
6620917 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGAT-AGGACCAGA-TCGAGGGTT
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACT-GAGGGTT
** * * * *
6620980 GCGGTAGCAGGATCGGCAGCACGGAGAGGGGGACCCGACCGATTCTCGGCTTGCGCATCCCACCC
129 GCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
6621045 ATCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
** *
6621110 CAG--T---C-T--A-AG---A-T--C-G-----GA-C---CC-GACCGAGGGTTTTGGCAGAAC
259 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * **
6621149 ATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG-CTGGAGCAT
324 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCAT
* * * * * *
6621213 CGCCAGAGAACCTAACCGGCGGCATT-AGGGTTCCGGCAATCGGGGGGGCCTAGGGGGTGTGCCC
388 CGCCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGC
6621277 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
450 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
6621342 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAGTAGCCAATAAAG
515 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
6621407 TGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTG
580 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
6621472 AATTTTTTTTTGCATGCCAACAAAAATACAAGGATCTCATCGACCAAGTTTGGGGCCAAAACACC
645 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
6621537 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAACC
710 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
6621602 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATTAATTTACAAGGCAT
775 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
6621667 AAAAATTGCATTGGCATGAAGAAATATGAAGATGTACCTAAA-CCACCTACCACCCTAT
840 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
6621725 CGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGCCCGTTCGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
*
6621786 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGAT-AGGACCAGA-TCGAGGGTT
66 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACT-GAGGGTT
** * * * *
6621849 GCGGTAGCAGGATCGGCAGCACGGAGAGGGGGACCCGACCGATTCTCGGCTTGCGCATCCCACCC
129 GCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
6621914 ATCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
** *
6621979 CAG--T---C-T--A-AG---A-T--C-G-----GA-C---CC-GACCGAGGGTTTTGGCAGAAC
259 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * **
6622018 ATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG-CTGGAGCAT
324 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCAT
* * * * * *
6622082 CGCCAGAGAACCTAACCGGCGGCATT-AGGGTTCCGGCAATCGGGGGGGCCTAGGGGGTGTGCCC
388 CGCCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGC
6622146 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
450 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
6622207 GTGTCTGAAA
Statistics
Matches: 9167, Mismatches: 981, Indels: 382
0.87 0.09 0.04
Matches are distributed among these distances:
867 1 0.00
868 112 0.01
869 940 0.10
871 688 0.08
872 126 0.01
873 41 0.00
874 207 0.02
875 136 0.01
876 337 0.04
877 6 0.00
878 1 0.00
879 4 0.00
880 2 0.00
881 3 0.00
882 3 0.00
883 1 0.00
884 1 0.00
885 4 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 327 0.04
890 28 0.00
891 2 0.00
892 43 0.00
893 93 0.01
894 60 0.01
895 8 0.00
896 707 0.08
897 642 0.07
898 521 0.06
899 234 0.03
900 323 0.04
901 498 0.05
902 316 0.03
903 743 0.08
904 611 0.07
905 241 0.03
906 106 0.01
907 242 0.03
908 4 0.00
910 1 0.00
912 2 0.00
918 2 0.00
919 1 0.00
920 1 0.00
922 43 0.00
923 304 0.03
924 226 0.02
925 1 0.00
928 2 0.00
929 2 0.00
930 1 0.00
931 2 0.00
932 49 0.01
933 163 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGC
CGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
Found at i:6613965 original size:26 final size:26
Alignment explanation
Indices: 6613927--6613980 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
6613917 GGTTGACTTT
6613927 AGCATACGAAGTTCATTCCCAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
6613953 AGCATAC-AGAGTTCATTCCCAGTCTA
1 AGCATACGA-AGTTCATTCCCAGTCTA
6613979 AG
1 AG
6613981 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:6614863 original size:26 final size:25
Alignment explanation
Indices: 6614827--6614878 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
6614817 GTTGACTTAG
6614827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
6614853 GCATACGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
6614878 G
1 G
6614879 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:6615759 original size:26 final size:26
Alignment explanation
Indices: 6615723--6615775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6615713 GTTGAGTTAG
*
6615723 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
6615749 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
6615775 G
1 G
6615776 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Done.