Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 58 of 120
Found at i:6696399 original size:11 final size:11
Alignment explanation
Indices: 6696372--6696405 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
6696362 TTGAGGAGTA
6696372 TTATTTTTATT
1 TTATTTTTATT
6696383 TT-TTTTTATT
1 TTATTTTTATT
6696393 TTATTTTTATT
1 TTATTTTTATT
6696404 TT
1 TT
6696406 TTGCAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:6696566 original size:117 final size:116
Alignment explanation
Indices: 6696434--6696645 Score: 327
Period size: 117 Copynumber: 1.8 Consensus size: 116
6696424 TTTCAAAAAG
* * * **
6696434 AAATATTTTTTGGGAAAAGTTGAAACTATCAATTTTCCTTGAAAATAAGCTTTCCAAAAAAAATA
1 AAATATTTCTGGGGAAAAGTTGAAACTATCAATTTTCCTCGAAAATAAAATTT--AAAAAAAATA
6696499 TTTTT-GGGAAAAGTTGAAAGTATCAATTTTCTTCGAAATTAAAGTTTCCAAA
64 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTCGAAATTAAAGTTTCCAAA
* * *
6696551 AAATATTTCTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTTAAAAAAATATT
1 AAATATTTCTGGGGAAAAGTTGAAACTATCAATTTTCCTCGAAAATAAAATTTAAAAAAAATATT
6696616 TTTGGGGAAAAGTTGAAAGTATCAATTTTC
66 TTTGGGGAAAAGTTGAAAGTATCAATTTTC
6696646 CCTTGTACAA
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
115 14 0.16
116 26 0.30
117 46 0.53
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (116 bp):
AAATATTTCTGGGGAAAAGTTGAAACTATCAATTTTCCTCGAAAATAAAATTTAAAAAAAATATT
TTTGGGGAAAAGTTGAAAGTATCAATTTTCTTCGAAATTAAAGTTTCCAAA
Found at i:6696646 original size:58 final size:58
Alignment explanation
Indices: 6696414--6696646 Score: 297
Period size: 58 Copynumber: 3.9 Consensus size: 58
6696404 TTTTGCAAAA
* * * *
6696414 AAATAAAAATTTTCAAAAAGAAATATTTTTTGGGAAAAGTTGAAACTATCAATTTTCCTTG
1 AAATTAAAATTTT--AAAA-AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
* ** * *
6696475 AAAATAAGCTTTCCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCTTCG
1 AAATTAAAATTT--TAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
* ** *
6696534 AAATTAAAGTTTCCAAAAAATATTTCTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAATTAAAATTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
6696592 AAATTAAAATTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATTAAAATTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
6696647 CTTGTACAAA
Statistics
Matches: 150, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
57 12 0.08
58 80 0.53
59 36 0.24
60 10 0.07
61 12 0.08
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (58 bp):
AAATTAAAATTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
Found at i:6697209 original size:13 final size:13
Alignment explanation
Indices: 6697191--6697215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6697181 TATACATTAG
6697191 CATAGGATTTTAT
1 CATAGGATTTTAT
6697204 CATAGGATTTTA
1 CATAGGATTTTA
6697216 GTGCTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
CATAGGATTTTAT
Found at i:6700376 original size:181 final size:180
Alignment explanation
Indices: 6700114--6702563 Score: 1905
Period size: 181 Copynumber: 13.7 Consensus size: 180
6700104 ACTTATTCAG
* * * * * * *
6700114 AATAAAATAAAACAAATTTATTAATATTTAAAAAATTAATAAGTATGGGATTTAAAAAATAATTT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * *
6700179 TGTTT-GTCAAACCAGTTCAAATAGTTATGATTATTTGAACAATTATCTATTTCAAATCGTTATG
66 TGTTTACT-AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
* * * * * *
6700243 ACTTTTTCTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGTTGATTTGG
130 ACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAGTT-ATTTGA
* * * ** *
6700295 AATAAAATAATATTAATCTATTCATATTTTGAAAATTAAGAAGTAAGAGATTTAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * * * * *
6700360 TGTTTACTAAACCAGTTCAGTTAGTTATAACTATTTAAACAATTCTTTATTTCAAATCATTAAGA
66 TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
** * * * * *
6700425 CAATTTGTTTTGTCATAAAATAATTGTTTTTATTCATA-TAGTCTTATTCGA
131 CCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG--TTATTTGA
* * * ** * * *
6700476 AATAAAGTAATGCTAATGTATTAATATTTTGAAAATTCATAAGTAACAGATTTAAAAAATGAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * * * * * * *
6700541 TATTGGCCT-GACCAGTGCAAATAGTTATGACTGTTTGAATAATTATTTATTTGAAAT-AGTTAT
66 TGTT-TACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTAT
* * * * * * *
6700604 GACCTTTTGTTTTATCACAAAGCAATTGTTTCTGTTCGTAAAAGCTTATTTGA
129 GACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG-TTATTTGA
* * * *
6700657 AATAACATAA-ATCTAATTTATTAATA-TTCTTAAAA-CAATGAGTAAGAGATTTAAAAAATGAA
1 AATAAAATAATA-CTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAAT-AA
* * * *
6700719 A-CTATTT-TTCGAACAAGTTCAAATAGTTATGACTCTTTGAACAATTATCTATTTCAAATCATT
63 ATCTGTTTACT-AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * * * *
6700782 ATGACCTTTTATTTTGTCATAAAATAATTTTTTCTACTCATACAAGCTTATTTCA
127 ATGACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG-TTATTTGA
* * * * *
6700837 AATAAAATTATACAAATTTATTAATATTT-AGACATTTAATAAGTAAAAGATTTAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * * * * *
6700901 TTGTTTACCAAATAAGTT-AAATAGTCATAACTGTTTGAATAATTATTTATTTCAAACCGTTATG
65 CTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
* * * * * * * * *
6700965 ACATTTTGTTTTATCATAAAACAATTATTTTTCTCCATAAAAGCTTATTTGG
130 ACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG-TTATTTGA
* * * * * * * *
6701017 ATTAAAATAATATTAATTTTTTAATATTTCGATAATTAATAAGTAAAAGATTTTAAAAATAAATA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * * ** ** * *
6701082 TATTTACCGAATAAGTTCAAATAGTCACAACTATTTGAGTAATTATCTATTTAAAATCATTTTGA
66 TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
** * * * * * **
6701147 CCTTTTGTTTCATCCTAAAACAATTGTATCAATTCATATAAGCTTATTCAA
131 CCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG-TTATTTGA
* * * * *
6701198 AATAAAATAATATTAATTTATTAATATTCCAAAAAATAATGAGTAAGAGATTTAAAAGATGAAA-
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAAT
* * * * * **
6701262 CTATTTTCTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTTAAATTGTTATG
65 CTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
*
6701327 ACCTTTTGTTTTGTCATAAAAC-AATCG-TTCATGTTCATACAAGTTTATTTCG-
130 ACCTTTTGTTTTGTCATAAAACAAAT-GTTTC-TATTCATACAAG-TTATTT-GA
*
6701379 AATAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGTAA-AAATTTAAAAAATAAA-
1 AATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* ** * * * *
6701441 CTTATTTTTTGAACATGTTCAAATAGTTATGACTATTTGAACAATTATCTTTTTCGAAT-AGTTA
65 C-TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTA
** * *
6701505 TGACCTTTTGTTTCATTATAAACCAAATGTTTCTATTCATACAAGTGTATTTGA
128 TGACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAGT-TATTTGA
* ** * * * *
6701559 AATAAAATAGTACTAGGTTATTAATATTCCAAAAATTGATAAGTAAAAGAGTTAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * *
6701624 TGTTTACCATGCAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTATTTCAAAT-AGTTATG
66 TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATG
* * * * * *
6701688 ATCTTTTGTTTTATCATAAAATAATTGTTTCAATTCATACAAGTTTATTTGG
130 ACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAG-TTATTTGA
* * *
6701740 AATAAAATAATACTAATTTATTAATA-TTCTGAAAATTAATAGGTAGGAGATTTAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * ** *
6701804 ATGTTTACCAAACAAGTTCAAATAGTCATGTCCGTTTGAACAATTATCTATTTGAAATCATTATG
65 CTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
* *
6701869 ACCTTTTGTTTAGTCATAAAAC-AA----TCTATTCATGCAA---ATTTGGCAA
130 ACCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAGTTATTT-G--A
* * * * *
6701915 AATAAAATAATATTGATTTATTAAT-TTTCTAAAATTAAT-A--AA-AGATTTGAAAACTAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* *
6701975 TATTTACGAAA-ATAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTT-AAATCATTAT
66 TGTTTACTAAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTAT-TTCAAATCATTAT
* * * * * *
6702038 GATC-TTTATTTTGTCATAAAATAATTGTTTCT-TTCCATACATGCTTA-TTCA
129 GACCTTTTGTTTTGTCATAAAACAAATGTTTCTATT-CATACAAG-TTATTTGA
* * * * * *
6702089 TATTAAAATAATACTAATTTAATAATATTCCAAAAATCAATGAGTAAGAAATTTAAAAAAATAAA
1 -AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAA
* * * * * * *
6702154 TATG-TT--T------G-TCAAATAGTTAAGACTATTAGAATACTTATCTATTTAAAATCATTCT
64 TCTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT
* * * * * * *
6702209 AACC-TTTGTTTAGTCATTAAACAACTATTTC-AGTTCATATAAGCTTATTTAA
129 GACCTTTTGTTTTGTCATAAAACAAATGTTTCTA-TTCATACAAG-TTATTTGA
* * *
6702261 AATAAAATAATACTAATTTATTAACATTTAAAAAATTAATGAGTAAGAGATTTAAAAATATAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAAAT
* * * * *
6702326 CTGTTTACTGAACAATTTCAAATAGGTT-TGACTATATGAACAATTTTTTATTT-AAAGTCATTA
65 CTGTTTACTAAACAAGTTCAAATA-GTTATGACTATTTGAACAATTATCTATTTCAAA-TCATTA
* * * * * *
6702389 TGACCTTTTATTTTGTAATAAAAC-AATCGTTTCAATTCATAAAAACTTATATGA
128 TGACCTTTTGTTTTGTCATAAAACAAAT-GTTTCTATTCAT-ACAAGTTATTTGA
* * * * * * * *
6702443 AATAAAATAATACTATTTTACTGATATTTCAAAAATTAATAAGCAAGATATTTAGAAACTAAAGC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * * * * *
6702508 TGTTTTC-AAACCAGTTCAAATAGTTATGATTAGTTAAACAAATATCAATCTCAAAT
66 TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
6702564 AGTTTATGCT
Statistics
Matches: 1813, Mismatches: 373, Indels: 167
0.77 0.16 0.07
Matches are distributed among these distances:
169 16 0.01
170 78 0.04
171 129 0.07
172 12 0.01
173 3 0.00
174 19 0.01
175 47 0.03
176 22 0.01
177 3 0.00
178 2 0.00
179 11 0.01
180 477 0.26
181 896 0.49
182 94 0.05
183 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (180 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
TGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
CCTTTTGTTTTGTCATAAAACAAATGTTTCTATTCATACAAGTTATTTGA
Found at i:6700842 original size:361 final size:360
Alignment explanation
Indices: 6700105--6702563 Score: 1924
Period size: 361 Copynumber: 6.9 Consensus size: 360
6700095 TTCTTAGTAA
* * * * ** ***
6700105 CTTATTCAGAATAAAATAAAACAAATTTATTAATATTTAAAAAATTAATAAGTATGGGATTTAAA
1 CTTATTCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAA
* * * ** * * * * * *
6700170 AAATAATTTTGTTTGTCAAACCAGTTCAAATAGTTATGATTATTTGAACAATTATCTATTTCAAA
66 AAATAAATCTATTTACCTAACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCAAA
* * * * * * *
6700235 TCGTTATGACTTTTTCTTTTGTCATAAAACAAATGTTTTTGTTCATATAAG-TTGATTTGGAATA
131 TAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTT-ATTTGGAATA
* * * *
6700299 AAATAATATTAATCTATTCATATTTTGAAAATTAAGAAGTAAGAGATTTAAAAAATAAATCTGTT
195 AAATAATATTAATTTATTAATA-TTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAA-CTATT
* ** * ** * * * * * **
6700364 TACTAAACCAGTTCAGTTAGTTATAACTATTTAAACAATTCTTTATTTCAAATCATTAAGACAAT
258 TTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTT
* * * *
6700429 TTGTTTTGTCATAAAATAATTGTTTTTATTCATA-TAG
323 TTGTTTCGTCATAAAACAATTGTTTCTATTCATACAAG
* * * *** * *
6700466 TCTTATTCGAAATAAAGTAATGCTAATGTATTAATATTTTGAAAATTCATAAGTAACAGATTTAA
1 -CTTATTCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAA
* ** * * * *
6700531 AAAATGAATCTATTGGCCTGACCAGTGCAAATAGTTATGACTGTTTGAATAATTATTTATTTGAA
65 AAAATAAATCTATTTACCTAACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCAA
* * * *
6700596 ATAGTTATGACCTTTTGTTTTATCACAAAGCAATTGTTTCTGTTCGTAAAAGCTTATTTGAAATA
130 ATAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTTGGAATA
* * * *
6700661 ACATAA-ATCTAATTTATTAATATTCTTAAAA-CAATGAGTAAGAGATTTAAAAAATGAAACTAT
195 AAATAATAT-TAATTTATTAATATT-TGAAAATTAATAAGTAAGAGATTTAAAAAAT-AAACTAT
* *
6700724 TTTTCGAACAAGTTCAAATAGTTATGACTCTTTGAACAATTATCTATTTCAAATCATTATGACCT
257 TTTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCT
* * * * *
6700789 TTTATTTTGTCATAAAATAATTTTTTCTACTCATACAAG
322 TTTGTTTCGTCATAAAACAATTGTTTCTATTCATACAAG
* * * * * *
6700828 CTTATTTC-AAATAAAATTATACAAATTTATTAATATT-TAGACATTTAATAAGTAAAAGATTTA
1 CTTA-TTCAAAATAAAATAATACTAATGTATTAATATTCCA-AAAATTAATAAGTAAAAGATTTA
* * * * * *
6700891 AAAAATAAATTTGTTTACCAAATAAGTT-AAATAGTCATAACTGTTTGAATAATTATTTATTTCA
64 AAAAATAAATCTATTTACCTAACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCA
** * * * * * *
6700955 AACCGTTATGACATTTTGTTTTATCATAAAACAATTATTTTTCTCCATAAAAGCTTATTTGGATT
129 AATAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTTGGAAT
* * * *
6701020 AAAATAATATTAATTTTTTAATATTTCGATAATTAATAAGTAAAAGATTTTAAAAATAAA-TATA
194 AAAATAATATTAATTTATTAATATTT-GAAAATTAATAAGTAAGAGATTTAAAAAATAAACTAT-
* * ** ** * *
6701084 TTTACCGAATAAGTTCAAATAGTCACAACTATTTGAGTAATTATCTATTTAAAATCATTTTGACC
257 TTT-CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * *
6701149 TTTTGTTTCATCCTAAAACAATTGTATCAATTCATATAAG
321 TTTTGTTTCGTCATAAAACAATTGTTTCTATTCATACAAG
* * * * *
6701189 CTTATTCAAAATAAAATAATATTAATTTATTAATATTCCAAAAAATAATGAGTAAGAGATTTAAA
1 CTTATTCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAA
* * * * * *
6701254 AGATGAAA-CTATTT-TCTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTTA
66 AAAT-AAATCTATTTACCT-AACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCA
* * * * * *
6701317 AATTGTTATGACCTTTTGTTTTGTCATAAAACAATCG-TTCATGTTCATACAAGTTTATTTCGAA
129 AATAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTC-TGTTCATAAAAGCTTATTTGGAA
* * *
6701381 TAAAATAATATAAATTTATTAATATTTCAAAAATTAATAAGTAA-AAATTTAAAAAATAAACTTA
193 TAAAATAATATTAATTTATTAATATTT-GAAAATTAATAAGTAAGAGATTTAAAAAATAAAC-TA
** * * *
6701445 TTTTTTGAACATGTTCAAATAGTTATGACTATTTGAACAATTATCTTTTTCGAAT-AGTTATGAC
256 TTTTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGAC
* * * *
6701509 CTTTTGTTTCATTATAAACCAAATGTTTCTATTCATACAAG
320 CTTTTGTTTCGTCATAAAACAATTGTTTCTATTCATACAAG
** * * * *
6701550 -TGTATTTGAAATAAAATAGTACT-AGGTTATTAATATTCCAAAAATTGATAAGTAAAAGAGTTA
1 CT-TATTCAAAATAAAATAATACTAATG-TATTAATATTCCAAAAATTAATAAGTAAAAGATTTA
* * *
6701613 AAAAATAAATCTGTTTACC-ATGCAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTATTTC
64 AAAAATAAATCTATTTACCTA-ACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTC
* * ** * *
6701677 AAATAGTTATGATCTTTTGTTTTATCATAAAATAATTGTTTCAATTCATACAAGTTTATTTGGAA
128 AAATAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTTGGAA
* * *
6701742 TAAAATAATACTAATTTATTAATATTCTGAAAATTAATAGGTAGGAGATTTAAAAAATAAA-TAT
193 TAAAATAATATTAATTTATTAATATT-TGAAAATTAATAAGTAAGAGATTTAAAAAATAAACTAT
* * * ** *
6701806 GTTTACCAAACAAGTTCAAATAGTCATGTCCGTTTGAACAATTATCTATTTGAAATCATTATGAC
257 -TTT-CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* *
6701871 CTTTTGTTTAGTCATAAAACAA-----TCTATTCATGCAA-
320 CTTTTGTTTCGTCATAAAACAATTGTTTCTATTCATACAAG
* * * * * * * *
6701906 ATT-TGGCAAAATAAAATAATATTGATTTATTAAT-TTTCTAAAA-T--TAA-TAAAAGATTTGA
1 CTTAT-TCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAA
* * * * * *
6701965 AAACTAAATCTATTTA-CGAAAATAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTT-
65 AAAATAAATCTATTTACCTAACA-AGTTCAAATAGTTATGACTGTTTGAATAATTATTTAT-TTC
* * * * * * ***
6702028 AAATCA-TTATGATC-TTTATTTTGTCATAAAATAATTGTTTCT-TTCCATACATGCTTATTCAT
128 AAAT-AGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTT-CATAAAAGCTTATTTGG
* * * ** * * *
6702090 ATTAAAATAATACTAATTTAATAATATTCCAAAAATCAATGAGTAAGAAATTTAAAAAAATAAA-
191 AATAAAATAATATTAATTTATTAATATT-TGAAAATTAATAAGTAAGAGATTT-AAAAAATAAAC
* * * * * * *
6702154 TATGTTT--------G-TCAAATAGTTAAGACTATTAGAATACTTATCTATTTAAAATCATTCTA
254 TAT-TTTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
* * * * *
6702210 ACC-TTTGTTTAGTCATTAAACAACTATTTC-AGTTCATATAAG
318 ACCTTTTGTTTCGTCATAAAACAATTGTTTCTA-TTCATACAAG
* * * ** * *
6702252 CTTATTTAAAATAAAATAATACTAATTTATTAACATTTAAAAAATTAATGAGTAAGAGATTTAAA
1 CTTATTCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAA
* * * * * *
6702317 AATATAAATCTGTTTA-CTGAACAATTTCAAATAGGTT-TGACTATATGAACAATTTTTTATTT-
66 AA-ATAAATCTATTTACCT-AACAAGTTCAAATA-GTTATGACTGTTTGAATAATTATTTATTTC
* * * * ** * * *
6702379 AAAGTCA-TTATGACCTTTTATTTTGTAATAAAACAATCGTTTCAATTCATAAAAACTTATATGA
128 AAA-T-AGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTTGG
* * * * * * * * *
6702443 AATAAAATAATACTATTTTACTGATATTTCAAAAATTAATAAGCAAGATATTTAGAAACTAAAGC
191 AATAAAATAATATTAATTTATTAATATTT-GAAAATTAATAAGTAAGAGATTTAAAAAATAAA-C
* * * * * * * * *
6702508 TGTTTT-CAAACCAGTTCAAATAGTTATGATTAGTTAAACAAATATCAATCTCAAAT
254 TATTTTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
6702564 AGTTTATGCT
Statistics
Matches: 1685, Mismatches: 341, Indels: 143
0.78 0.16 0.07
Matches are distributed among these distances:
340 19 0.01
341 40 0.02
342 1 0.00
344 1 0.00
345 9 0.01
346 26 0.02
347 8 0.00
348 1 0.00
349 2 0.00
350 85 0.05
351 107 0.06
352 65 0.04
353 86 0.05
354 5 0.00
355 8 0.00
356 21 0.01
357 14 0.01
359 4 0.00
360 131 0.08
361 654 0.39
362 392 0.23
363 6 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (360 bp):
CTTATTCAAAATAAAATAATACTAATGTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAA
AAATAAATCTATTTACCTAACAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCAAA
TAGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTTGGAATAA
AATAATATTAATTTATTAATATTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAACTATTTTC
CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTG
TTTCGTCATAAAACAATTGTTTCTATTCATACAAG
Found at i:6701241 original size:542 final size:536
Alignment explanation
Indices: 6700075--6704237 Score: 2262
Period size: 542 Copynumber: 7.8 Consensus size: 536
6700065 TATTTTATTG
* * * * * * * *
6700075 TCATAAAATAATTTTTTCAGTTCTTAGTAA-CTTATTCAGAATAAAATAAAACAAATTTATTAAT
1 TCATAAAACAATTGTTTCAATTCATA-TAAGCTTATTTAAAATAAAATAATACTAATTTATTAAT
* * * * * *
6700139 ATTTAAAAAATTAATAAGTATGGGATTTAAAAAAT-AATTTTGTTTGTCAAACCAGTTCAAATAG
65 ATTTAAAAAA-TAATGAGTAAGAGATTTAAAAAATAAACTAT-TTT-TCAAACAAGTTCAAATAG
* * * *
6700203 TTATGATTATTTGAACAATTATCTATTTCAAATCGTTATGACTTTTTCTTTTGTCATAAAACAAA
127 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAAC-AA
* * ** * * * *
6700268 TGTTTT-TGTTCATATAAGTTGATTTGGAATAAAATAATATTAATCTATTCATATTTTGAAAATT
191 T-TTTTCTATTCATACAAGTT-ATTTCAAATAAAATAATATAAATTTATTAATA-TTTAAAAATT
* * * * ** *
6700332 AAGAAGTAAGAGATTTAAAAAATAAATCTGTTTACTAAACCAGTTCAGTTAGTTATAACTATTTA
253 AATAAGTAAAAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTATTTG
* * * * * *
6700397 AACAATTCTTTATTTCAAATCATTAAGACAATTTGTTTTGTCATAAAATAATTGTTTTTATTCAT
318 AACAATTATTTATTTCAAATCATTATGACATTTTGTTTTATCATAAAACAATTGTTTTTATCCAT
* * * * *** * *
6700462 -ATAGTCTTATTCGAAATAAAGTAATGCTAATGTATTAATATTTTGAAAATTCATAAGTAACAGA
383 AAAAG-CTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGA
* * ** * * * *
6700526 TTTAAAAAATGAATCTATTGGCC-TGACCAGTGCAAATAGTTATGACTGTTTGAATAATTATTTA
447 TTTAAAAAATAAATATATTTACCAT-A--AGTTCAAATAGTTATAACTATTTGAATAATTATCTA
*
6700590 TTTGAAATAGTTATGACCTTTTGTTTTA
509 TTTAAAATAGTTATGACCTTTTGTTTTA
* * ** * * * *
6700618 TCACAAAGCAATTGTTTCTGTTCGTAAAAGCTTATTTGAAATAACATAA-ATCTAATTTATTAAT
1 TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATA-CTAATTTATTAAT
* * *
6700682 ATTCT-TAAAACAATGAGTAAGAGATTTAAAAAATGAAACTATTTTTCGAACAAGTTCAAATAGT
65 ATT-TAAAAAATAATGAGTAAGAGATTTAAAAAAT-AAACTATTTTTCAAACAAGTTCAAATAGT
* *
6700746 TATGACTCTTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATT
128 TATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAA-T
* * * * *
6700811 TTTTCTACTCATACAAGCTTATTTCAAATAAAATTATACAAATTTATTAATATTTAGACATTTAA
192 TTTTCTATTCATACAAG-TTATTTCAAATAAAATAATATAAATTTATTAATATTTA-AAAATTAA
* * * * * *
6700876 TAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAAATAAGTT-AAATAGTCATAACTGTTTGAA
255 TAAGTAAAAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTATTTGAA
* * * * *
6700940 TAATTATTTATTTCAAACCGTTATGACATTTTGTTTTATCATAAAACAATTATTTTTCTCCATAA
320 CAATTATTTATTTCAAATCATTATGACATTTTGTTTTATCATAAAACAATTGTTTTTATCCATAA
* * * * * * * *
6701005 AAGCTTATTTGGATTAAAATAATATTAATTTTTTAATATTTCGATAATTAATAAGTAAAAGATTT
385 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTT
* * * *
6701070 TAAAAATAAATATATTTACCGAATAAGTTCAAATAGTCACAACTATTTGAGTAATTATCTATTTA
450 AAAAAATAAATATATTTACC--ATAAGTTCAAATAGTTATAACTATTTGAATAATTATCTATTTA
* *
6701135 AAATCA-TTTTGACCTTTTGTTTCA
513 AAAT-AGTTATGACCTTTTGTTTTA
* * * *
6701159 TCCTAAAACAATTGTATCAATTCATATAAGCTTATTCAAAATAAAATAATATTAATTTATTAATA
1 TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAATA
* *
6701224 TTCCAAAAAATAATGAGTAAGAGATTTAAAAGATGAAACTA-TTTTCTAAACAAGTTCAAATAGT
66 TT-TAAAAAATAATGAGTAAGAGATTTAAAAAAT-AAACTATTTTTC-AAACAAGTTCAAATAGT
* * * ** * *
6701288 TATGACTATTTAAATAATTATCTATTTTAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATC
128 TATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATT
* * *
6701353 GTTCATGTTCATACAAGTTTATTTCGAATAAAATAATATAAATTTATTAATATTTCAAAAATTAA
193 TTTC-TATTCATACAAG-TTATTTCAAATAAAATAATATAAATTTATTAATATTT-AAAAATTAA
** * * *
6701418 TAAGTAAAA-ATTTAAAAAATAAA-CTTATTTTTTGAACATGTTCAAATAGTTATGACTATTTGA
255 TAAGTAAAAGATTTAAAAAATAAATC-TATTTACTAAACAAGTTCAAATAGTTATAACTATTTGA
* * * * * * * *
6701481 ACAATTATCTT-TTTCGAAT-AGTTATGACCTTTTGTTTCATTATAAACCAAATGTTTCTATTCA
319 ACAATTAT-TTATTTCAAATCA-TTATGACATTTTGTTTTATCATAAAACAATTGTTTTTATCCA
* * * ** *
6701544 TACAAG-TGTATTTGAAATAAAATAGTACTAGGTTATTAATATTCCAAAAATTGATAAGTAAAAG
382 TAAAAGCT-TATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAG
* * * * * * *
6701608 AGTTAAAAAATAAATCTGTTTACCATGCAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTA
446 ATTTAAAAAATAAATATATTTACCAT--AAGTTCAAATAGTTATAACTATTTGAATAATTATCTA
* *
6701673 TTTCAAATAGTTATGATCTTTTGTTTTA
509 TTTAAAATAGTTATGACCTTTTGTTTTA
* * * **
6701701 TCATAAAATAATTGTTTCAATTCATACAAGTTTATTTGGAATAAAATAATACTAATTTATTAATA
1 TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAATA
* * * *
6701766 TTCTGAAAATTAAT-AGGTAGGAGATTTAAAAAATAAA-TATGTTTACCAAACAAGTTCAAATAG
66 TT-TAAAAAATAATGA-GTAAGAGATTTAAAAAATAAACTAT-TTT-TCAAACAAGTTCAAATAG
* * ** * * *
6701829 TCATGTCCGTTTGAACAATTATCTATTTGAAATCATTATGACCTTTTGTTTAGTCATAAAACAA-
127 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAAT
* * ** ** *
6701893 ---TCTATTCATGCAAATT-TGGCAAAATAAAATAATATTGATTTATTAAT-TTTCTAAAA-T--
192 TTTTCTATTCATACAAGTTATTTC-AAATAAAATAATATAAATTTATTAATATTT-AAAAATTAA
* * * *
6701950 TAA-TAAAAGATTTGAAAACTAAATCTATTTACGAAA-ATAGTTCAAATAGTTATGACTATTTGA
255 TAAGTAAAAGATTTAAAAAATAAATCTATTTACTAAACA-AGTTCAAATAGTTATAACTATTTGA
* * * *
6702013 ACAATTATCTATCTT-AAATCATTATG--ATCTTTATTTTGTCATAAAATAATTGTTTCTT-TCC
319 ACAATTATTTAT-TTCAAATCATTATGACAT-TTTGTTTTATCATAAAACAATTGTTT-TTATCC
* * * * * *
6702074 ATACATGCTTATTC-ATATTAAAATAATACTAATTTAATAATATTCCAAAAATCAATGAGTAAGA
381 ATAAAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-A
* * *
6702138 A-ATTTAAAAAAATAAATAT-GTT----T--G-TCAAATAGTTA-AGACTATTAGAATACTTATC
444 AGATTT-AAAAAATAAATATATTTACCATAAGTTCAAATAGTTATA-ACTATTTGAATAATTATC
* *
6702193 TATTTAAAATCA-TTCTAACC-TTTG-TTTA
507 TATTTAAAAT-AGTTATGACCTTTTGTTTTA
* * * * *
6702221 GTCATTAAACAACTATTTCAGTTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAAC
1 -TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAAT
* * * *
6702286 ATTTAAAAAATTAATGAGTAAGAGATTTAAAAATATAAATCT-GTTTACTGAACAATTTCAAATA
65 ATTTAAAAAA-TAATGAGTAAGAGATTTAAAAA-ATAAA-CTATTTTTC-AAACAAGTTCAAATA
* * * *
6702350 GGTT-TGACTATATGAACAATTTTTTATTT-AAAGTCATTATGACCTTTTATTTTGTAATAAAAC
126 -GTTATGACTATTTGAACAATTATCTATTTCAAA-TCATTATGACCTTTTATTTTGTCATAAAAC
* * * * * * * * *
6702413 AATCGTTTCAATTCATAAAAACTTATATGAAATAAAATAATACT-ATTTTACTGATATTTCAAAA
189 AAT-TTTTCTATTCAT-ACAAGTTATTTCAAATAAAATAATA-TAAATTTATTAATATTT-AAAA
* * * * * * * * * * * *
6702477 ATTAATAAGCAAGATATTTAGAAACTAAAGCTGTTTTC-AAACCAGTTCAAATAGTTATGATTAG
250 ATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTAT
* * ** * * * * *
6702541 TTAAACAAATATCAATCTCAAAT-AGTTTATG-C-TCTTTGTTTTCTCACAAAACAATTATTAAT
315 TTGAACAATTATTTATTTCAAATCA--TTATGACAT-TTTGTTTTATCATAAAACAATTGTT-TT
* * * * * * *
6702603 AAT--TTAAAA---TATT--AAATAAAATAATATTAATCTA--ATTATT-AATAAAACT-AT-A-
376 TATCCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCA-AAAATTAATAAG
** * * ** ** * ** *
6702655 TATTA-ATATTAACATATTAATATATATGGGAGCTTTTTA-TT-ATTTAGTTGA-AACGATATT-
440 TAAAAGAT-TTAA-AAAATAA-ATATAT-TTA-C-CATAAGTTCAAATAGTT-ATAACTAT-TTG
* ** * ** * **
6702715 AAAACATTAAATATATAATGTTTA-TTTTGTTCTTATTGTTTTA
497 AATA-ATTATCTATTTAA--AATAGTTATGACCTT-TTGTTTTA
* * * * * * * * * *
6702758 TTATATAATAAAT-ATT-GATT-AT-T-AG-ATAATTAATAT-TAATAAT--TAA-TT-TTAATA
1 TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAATA
* * * * ** * * * * *
6702812 -TT-AATAATCATTATTAATTGA-TT----ATTTAATTATTATT-----AAGCTCAAATAGTTAT
66 TTTAAAAAATAATGAGTAAGAGATTTAAAAAATAAACTATTTTTCAAACAAGTTCAAATAGTTAT
* * * * * *
6702865 AACTGTTTGAATAATTTTTTATTT-ATAAT-AGTTATGATCTTTTATTTTGTCATAAAACAATTG
131 GACTATTTGAACAATTATCTATTTCA-AATCA-TTATGACCTTTTATTTTGTCATAAAACAATT-
* * **
6702928 TTTCTATTCATACAAGTT-TATTCAAAATGAAATAATACT-ACTTTATTAATATTTTGCAAATTA
193 TTTCTATTCATACAAGTTAT-TTC-AAATAAAATAATA-TAAATTTATTAATA-TTTAAAAATTA
* ** * ** ** ** * **
6702991 ATAGGTAGGAGATTTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCGTGTCCATCAGA
254 ATAAGTAAAAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTATTTGA
* * * * * * *
6703056 ACAATTATCTATTTCAAAT-GTTATGACCTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCAT
319 ACAATTATTTATTTCAAATCATTATGA-CATTTTGTTTTATCATAAAACAATTGTTTTTATCCAT
* ** * **
6703120 ACAGAA--TTATTCAAAATAAAATAATTTTGATTTATTAATATTTTAAAAA-T--TAA-TAAAAG
383 A-A-AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAG
* * * * *
6703179 ATTTAAAAAATAAATCTATTTACTAAACTAA-TTCAAATAGCTATGACTATTTGAACAATTATCT
446 ATTTAAAAAATAAATATATTTAC--CA-TAAGTTCAAATAGTTATAACTATTTGAATAATTATCT
* * * * * *
6703243 ATCTCAAATCA-TAATGATC-TTTATTTTG
508 ATTTAAAAT-AGTTATGACCTTTTGTTTTA
* ** * *** * * * *
6703271 TCATACAACAATTGTTTCCTTTCATACAAGCTTATTCGGATTAACATGATACTAATTTAATAATA
1 TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAATA
* * *
6703336 TTTCAAAAAT--T-AATAAGAGATTTAAAAAATAAA-TATGTTAGTCAAACTAA-TTCAAATAGT
66 TTTAAAAAATAATGAGTAAGAGATTTAAAAAATAAACTAT-TT-TTCAAAC-AAGTTCAAATAGT
** *** * * * *
6703396 TAAAACTATCAAAATAATTATCTATTTCAAATCATT-TTATCCTTTTGTTTAGTCATAAAACAAT
128 TATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CCTTTTATTTTGTCATAAAACAAT
** * * *
6703460 TATTT-TAGTTCATACAAGCTTATTTGGAATAAACTAATACT-AATTTATTAACATTCAAAAAAT
192 T-TTTCTA-TTCATACAAG-TTATTTCAAATAAAATAATA-TAAATTTATTAATATT-TAAAAAT
* * * * ** * * *
6703523 T-A-AAGCAAGAGATTTAAAAAAATAAATATGTTTGTTGAACAATTTCAAATAGATATAACTATT
252 TAATAAGTAAAAGATTT-AAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTATT
* * * * * * * * * ** **
6703586 TAAAAAATTATCTGTTTAAAATTATTTTAACATTTTGTTTTGTCATAAAACAATTGTTTCAATTA
316 TGAACAATTATTTATTTCAAATCATTATGACATTTTGTTTTATCATAAAACAATTGTTTTTATCC
* * * ** ** * *
6703651 ATAAAAACTTA-TCTAAAATAAAATAATACTACTTTATTAATATTTTAAAAATTGTTAAGCAAGA
381 ATAAAAGCTTATTC-GAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAA
* * ** * * * *
6703715 GATTTAAAAACTAAAGT-TGTTTTTCAAAGCAGTTCTAATAGTTATGACTATTTGAATAAATAT-
445 GATTTAAAAAATAAA-TATATTTACCATA--AGTTCAAATAGTTATAACTATTTGAATAATTATC
* * * * *
6703778 TACTCTCAAATCGTTATGATC-TTTGTTTTG
507 TA-TTTAAAATAGTTATGACCTTTTGTTTTA
* ** * * * * *
6703808 TCATAAAATAATTGTTT-TTTATCATATAAGC-TAATTCAGATAAAAATAATTCTAATTTAATAA
1 TCATAAAACAATTGTTTCAAT-TCATATAAGCTTATTTAAAAT-AAAATAATACTAATTTATTAA
* * ** * * * *
6703871 TATTTTAAAAATTAATAAAAAAGAGATTTAAAAAATAAA-TGTGCTTGTT-GATC-AGTTTAAAT
64 TA-TTTAAAAAATAATGAGTAAGAGATTTAAAAAATAAACTAT--TT-TTCAAACAAGTTCAAAT
* * * * * ** *
6703933 AGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGACCTTTTATTTAATCATAAAATA
125 AGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACA
* *
6703998 ATTGTTTC-AGTTCATACAAGCTTA-TTCAAAAGAAAATAATACT-AATTTATTAACT-TTTGGA
190 ATT-TTTCTA-TTCATACAAG-TTATTTC-AAATAAAATAATA-TAAATTTATTAA-TATTT-AA
* * ** * * * * * *
6704059 AGATTAATAAGCAGGATATTTGAAAAACTAAATTTGTTTA-TCGAACAAGTTCAAATAGTTATGA
248 AAATTAATAAGTAAAAGATTT-AAAAAATAAATCTATTTACT-AAACAAGTTCAAATAGTTATAA
* * * * *
6704123 CTATTTAAACAATTATCTATTTAAAATCGTTATGA-ATTTTTGTTTTGTCATAAAACAATTG-TT
311 CTATTTGAACAATTATTTATTTCAAATCATTATGACA-TTTTGTTTTATCATAAAACAATTGTTT
* * * * * * *
6704186 TTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTACTTTTCTTAATATT
375 TTA-TCCATAAAAGCTTATTCGAAATAAAATAATACTA-ATTTATTAATATT
6704238 TTGAAAATTA
Statistics
Matches: 2811, Mismatches: 613, Indels: 392
0.74 0.16 0.10
Matches are distributed among these distances:
508 1 0.00
509 15 0.01
510 126 0.04
511 63 0.02
512 3 0.00
513 16 0.01
514 7 0.00
515 14 0.00
516 28 0.01
517 37 0.01
518 11 0.00
519 15 0.01
520 14 0.00
521 91 0.03
522 129 0.05
523 21 0.01
524 14 0.00
525 16 0.01
526 7 0.00
527 32 0.01
528 30 0.01
529 21 0.01
530 11 0.00
531 88 0.03
532 151 0.05
533 197 0.07
534 111 0.04
535 23 0.01
536 49 0.02
537 128 0.05
538 11 0.00
539 3 0.00
540 116 0.04
541 320 0.11
542 810 0.29
543 76 0.03
544 6 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (536 bp):
TCATAAAACAATTGTTTCAATTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAATA
TTTAAAAAATAATGAGTAAGAGATTTAAAAAATAAACTATTTTTCAAACAAGTTCAAATAGTTAT
GACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTTTT
CTATTCATACAAGTTATTTCAAATAAAATAATATAAATTTATTAATATTTAAAAATTAATAAGTA
AAAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCAAATAGTTATAACTATTTGAACAATTA
TTTATTTCAAATCATTATGACATTTTGTTTTATCATAAAACAATTGTTTTTATCCATAAAAGCTT
ATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAA
TAAATATATTTACCATAAGTTCAAATAGTTATAACTATTTGAATAATTATCTATTTAAAATAGTT
ATGACCTTTTGTTTTA
Found at i:6702194 original size:171 final size:171
Alignment explanation
Indices: 6701991--6702331 Score: 407
Period size: 171 Copynumber: 2.0 Consensus size: 171
6701981 CGAAAATAGT
* * * * *
6701991 TCAAATAGTTATGACTATTTGAACAATTATCTATCTT-AAATCATTATGATCTTTATTTTGTCAT
1 TCAAATAGTTAAGACTATTAGAACAATTATCTAT-TTAAAATCATTATAACCTTTATTTAGTCAT
* * * * * * * *
6702055 AAAATAATTGTTTC-TTTCCATACATGCTTATTCATATTAAAATAATACTAATTTAATAATATTC
65 AAAACAACTATTTCAGTT-CATACAAGCTTATTCAAAATAAAATAATACTAATTTAATAACATTC
*
6702119 CAAAAATCAATGAGTAAGAAATTTAAAAAAATAAATATGTTTG
129 AAAAAATCAATGAGTAAGAAATTTAAAAAAATAAATATGTTTG
* * * * *
6702162 TCAAATAGTTAAGACTATTAGAATACTTATCTATTTAAAATCATTCTAACCTTTGTTTAGTCATT
1 TCAAATAGTTAAGACTATTAGAACAATTATCTATTTAAAATCATTATAACCTTTATTTAGTCATA
* * * *
6702227 AAACAACTATTTCAGTTCATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAACATTTAA
66 AAACAACTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAATAACATTCAA
* * * *
6702292 AAAATTAATGAGTAAGAGATTTAAAAATATAAATCTGTTT
131 AAAATCAATGAGTAAGAAATTTAAAAAAATAAATATGTTT
6702332 ACTGAACAAT
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
170 2 0.01
171 137 0.97
172 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (171 bp):
TCAAATAGTTAAGACTATTAGAACAATTATCTATTTAAAATCATTATAACCTTTATTTAGTCATA
AAACAACTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAATAACATTCAA
AAAATCAATGAGTAAGAAATTTAAAAAAATAAATATGTTTG
Found at i:6702801 original size:13 final size:13
Alignment explanation
Indices: 6702777--6702817 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
6702767 AAATATTGAT
6702777 TATTAGATAATTAA
1 TATTA-ATAATTAA
6702791 TATTAATAATTAA
1 TATTAATAATTAA
*
6702804 TTTTAAT-ATTAA
1 TATTAATAATTAA
6702816 TA
1 TA
6702818 ATCATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 6 0.24
13 14 0.56
14 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
TATTAATAATTAA
Found at i:6702802 original size:21 final size:20
Alignment explanation
Indices: 6702757--6702819 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
6702747 TTATTGTTTT
* * *
6702757 ATTATATAATAAATATTGATT
1 ATTA-ATAATTAATATTAATA
6702778 ATTAGATAATTAATATTAATA
1 ATTA-ATAATTAATATTAATA
*
6702799 ATTAAT-TTTAATATTAATA
1 ATTAATAATTAATATTAATA
6702818 AT
1 AT
6702820 CATTATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 14 0.38
20 2 0.05
21 21 0.57
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (20 bp):
ATTAATAATTAATATTAATA
Found at i:6702828 original size:19 final size:20
Alignment explanation
Indices: 6702786--6702829 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
6702776 TTATTAGATA
6702786 ATTAATATTAATAATTAATT
1 ATTAATATTAATAATTAATT
*
6702806 -TTAATATTAATAA-TCATT
1 ATTAATATTAATAATTAATT
6702824 ATTAAT
1 ATTAAT
6702830 TGATTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATATTAATAATTAATT
Found at i:6702837 original size:11 final size:10
Alignment explanation
Indices: 6702786--6702850 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
6702776 TTATTAGATA
6702786 ATTAA-TATT
1 ATTAATTATT
*
6702795 AATAATTAATT
1 ATTAATT-ATT
6702806 -TTAA-TATT
1 ATTAATTATT
* *
6702814 AATAATCATT
1 ATTAATTATT
6702824 ATTAATTGATT
1 ATTAATT-ATT
6702835 ATTTAATTATT
1 A-TTAATTATT
6702846 ATTAA
1 ATTAA
6702851 GCTCAAATAG
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
8 3 0.07
9 8 0.18
10 16 0.36
11 11 0.25
12 6 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (10 bp):
ATTAATTATT
Found at i:6703633 original size:180 final size:179
Alignment explanation
Indices: 6702904--6704248 Score: 914
Period size: 180 Copynumber: 7.5 Consensus size: 179
6702894 AGTTATGATC
* * * *
6702904 TTTTATTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGTTTATTCAAAATGAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAAGCTTATTCAGAATAAAATAATACTA
* *** * * * ***
6702968 CTTTATTAATATTTTGCAAATTAATAGGTAGGAGATTTAAAAAATAAATCTGTTTACCGAACAAG
65 ATTTATTAATATTTAAAAAATTAA-A-GCAAGAGATTTAAAAAATAAATATGTTTGTTGAACAAG
** ** * * * * * * *
6703033 TTCAAATAGTCGTGTCCA-TCAGAACAATTATCTATTTCAAAT-GTTATGACCT
128 TTCAAATAGTTATAACTATTTA-AAAAATTATCTATTTCAAATCATT-TTAACA
* * * ** *
6703085 TTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATAC-AGAATTATTCAAAATAAAATAATTTTG
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAG-CTTATTCAGAATAAAATAATACTA
* * * ** *
6703149 ATTTATTAATATTTTAAAAATTAATA--AA-AGATTTAAAAAATAAATCTATTTACTAAACTAA-
65 ATTTATTAATATTTAAAAAATTAA-AGCAAGAGATTTAAAAAATAAATATGTTTGTTGAAC-AAG
* * * * * *
6703210 TTCAAATAGCTATGACTATTTGAACAATTATCTATCTCAAATCA---TAATGA
128 TTCAAATAGTTATAACTATTTAAAAAATTATCTATTTCAAATCATTTTAA-CA
* * ** * * * *
6703260 TCTTTATTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCGGATTAACATGATACTA
1 T-TTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAGAATAAAATAATACTA
* * * * **
6703325 ATTTAATAATATTTCAAAAATT-AA-TAAGAGATTTAAAAAATAAATATGTTAGTCAAACTAA-T
65 ATTTATTAATATTTAAAAAATTAAAGCAAGAGATTTAAAAAATAAATATGTTTGTTGAAC-AAGT
* * * *
6703387 TCAAATAGTTAAAACTA-TCAAAATAATTATCTATTTCAAATCATTTTATCC
129 TCAAATAGTTATAACTATTTAAAA-AATTATCTATTTCAAATCATTTTAACA
* * * ** *
6703438 TTTTGTTTAGTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAATAAACTAATACTAA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAGAATAAAATAATACTAA
* * *
6703503 TTTATTAACATTCAAAAAATTAAAGCAAGAGATTTAAAAAAATAAATATGTTTGTTGAACAATTT
66 TTTATTAATATTTAAAAAATTAAAGCAAGAGATTT-AAAAAATAAATATGTTTGTTGAACAAGTT
* * * *
6703568 CAAATAGATATAACTATTTAAAAAATTATCTGTTTAAAATTATTTTAACA
130 CAAATAGTTATAACTATTTAAAAAATTATCTATTTCAAATCATTTTAACA
* * * * *
6703618 TTTTGTTTTGTCATAAAACAATTGTTTCAATTAATAAAAACTTA-TCTAAAATAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTC-AGAATAAAATAATACTA
* * * * *
6703682 CTTTATTAATATTTTAAAAATTGTTAAGCAAGAGATTTAAAAACTAAAGT-TGTTT-TTCAA-AG
65 ATTTATTAATA-TTTAAAAAAT-TAAAGCAAGAGATTTAAAAAATAAA-TATGTTTGTTGAACA-
* * * * * **
6703744 CAGTTCTAATAGTTATGACTATTTGAATAAA-TAT-TACTCTCAAATC--GTTATGA
126 -AGTTCAAATAGTTATAACTATTT-AAAAAATTATCTA-TTTCAAATCATTTTAACA
* ** * * *
6703797 TCTTTGTTTTGTCATAAAATAATTGTTT-TTTATCATATAAGCTAATTCAG-ATAAAAATAATTC
1 T-TTTGTTTTGTCATAAAACAATTGTTTCAGT-TCATACAAGCTTATTCAGAAT-AAAATAATAC
* * ** * * *
6703860 TAATTTAATAATATTTTAAAAATTAATAAAAAAGAGATTTAAAAAATAAATGTGCTTGTTGATC-
63 TAATTTATTAATATTTAAAAAATT-A-AAGCAAGAGATTTAAAAAATAAATATGTTTGTTGAACA
* * * * *
6703924 AGTTTAAATAGTTA-AGATTA-TTAGAATAATTATCTATTTCAAATCATTTTGACC
126 AGTTCAAATAGTTATA-ACTATTTA-AAAAATTATCTATTTCAAATCATTTTAACA
* ** * * *
6703978 TTTTATTTAATCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAAAAGAAAATAATACTAA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAGAATAAAATAATACTAA
** * * * * * * *
6704043 TTTATTAACT-TTTGGAAGATTAATAAGCAGGATATTTGAAAAACTAAATTTGTTTATCGAACAA
66 TTTATTAA-TATTTAAAAAATT-A-AAGCAAGAGATTT-AAAAAATAAATATGTTTGTTGAACAA
* * * * * *
6704107 GTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCGTTATGAA-T
127 GTTCAAATAGTTATAACTATTTAAAAAATTATCTATTTCAAATCATT-TTAACA
* * * * * *
6704160 TTTTGTTTTGTCATAAAACAATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTAC
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAGAATAAAATAATACTA-
* * **
6704225 TTTTCTTAATATTTTGAAAATTAA
65 ATTTATTAATATTTAAAAAATTAA
6704249 GAGATTTAAA
Statistics
Matches: 917, Mismatches: 195, Indels: 104
0.75 0.16 0.09
Matches are distributed among these distances:
174 2 0.00
175 7 0.01
176 127 0.14
177 131 0.14
178 13 0.01
179 58 0.06
180 284 0.31
181 161 0.18
182 113 0.12
183 21 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAGAATAAAATAATACTAA
TTTATTAATATTTAAAAAATTAAAGCAAGAGATTTAAAAAATAAATATGTTTGTTGAACAAGTTC
AAATAGTTATAACTATTTAAAAAATTATCTATTTCAAATCATTTTAACA
Found at i:6704351 original size:357 final size:355
Alignment explanation
Indices: 6702903--6704361 Score: 1180
Period size: 357 Copynumber: 4.1 Consensus size: 355
6702893 TAGTTATGAT
*
6702903 CTTTTATTTTGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCAAAATG-AAATAATACT
1 CTTTTATTTTGTCATAAAACAATTGTTTC-ATTCATACAAGCTTATTCAAAA-GAAAATAATACT
* * * * * * *
6702967 ACTTTATTAATATTTTG-CAAATTAATAGGTAGGAGATTTAAAAAATAAATCTGTTTACCGAACA
64 AATTTATTAATA-TTTGAAAAATTAATAAGCAGGAGATTTAAAAAATAAATTTGTTTATCAAACA
** * * * *
6703031 AGTTCAAATAGTCGTGTCCA-TCAGAACAATTATCTATTTCAAAT-GTTATGACCTTTTTGTTTT
128 AGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCGTTATGA-ATTTTTGTTTT
* ** *
6703094 GTCATAAAACAATTGTTTCTGTTCATACAGAA--TTATTCAAAATAAAATAATTTTGATTTATTA
191 GTCATAAAACAATTGTTT-TGTTC--ACAAAAGCTTATTCAAAATAAAATAATACTAATTTATTA
* **
6703157 ATATTTTAAAAATTAATAAA-AGATTTAAAAAATAAATCTA-TTTACTAAACTAATTCAAATAGC
253 ATATTTTAAAAATT-ATAAAGAGATTTAAAAAATAAATC-AGTTTACTAAACTAATTTAAATAAT
* ** *
6703220 TATGACTATTTGAACAATTATCTATCTCAAATCATAATGAT
316 TATGACTATTTGAACAATTATCTATTTCAAATC-TTTTGAC
* * ** ** * *
6703261 C-TTTATTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCGGATTAACATGATACTA
1 CTTTTATTTTGTCATAAAACAATTGTTT-CATTCATACAAGCTTATTCAAAAGAAAATAATACTA
* * *
6703325 ATTTAATAATATTTCAAAAATTAAT-A--A-GAGATTTAAAAAATAAATATG-TTAGTCAAACTA
65 ATTTATTAATATTTGAAAAATTAATAAGCAGGAGATTTAAAAAATAAATTTGTTTA-TCAAAC-A
** ** * * * *
6703385 A-TTCAAATAGTTAAAACTATCAAAATAATTATCTATTTCAAATCATT-T-TATCCTTTTGTTTA
128 AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGAAT--TTTTGTTTT
* * * *** * *
6703447 GTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAATAAACTAATACTAATTTATTAAC
191 GTCATAAAACAATTGTTTT-GTTCACAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAAT
** * ** *
6703512 ATTCAAAAAATTAAAGCAAGAGATTTAAAAAAATAAAT-ATGTTTGTTGAAC-AATTTCAAATAG
255 ATTTTAAAAATTATA--AAGAGATTT-AAAAAATAAATCA-GTTTACTAAACTAATTT-AAATA-
* * * * * * *
6703575 A-TATAACTATTTAAAAAATTATCTGTTTAAAATTATTTTAAC
314 ATTATGACTATTTGAACAATTATCTATTTCAAA-TCTTTTGAC
* * * * * *
6703617 ATTTTGTTTTGTCATAAAACAATTGTTTCAATTAATAAAAACTTA-TCTAAAATAAAATAATACT
1 CTTTTATTTTGTCATAAAACAATTGTTTC-ATTCATACAAGCTTATTC-AAAAGAAAATAATACT
* * ** * * * *
6703681 ACTTTATTAATATTTTAAAAATTGTTAAGCAAGAGATTTAAAAACTAAAGTTGTTTTTCAAAGC-
64 AATTTATTAATATTTGAAAAATTAATAAGCAGGAGATTTAAAAAATAAATTTGTTTATCAAA-CA
* * * * * *
6703745 AGTTCTAATAGTTATGACTATTTGAATAAATAT-TACTCTCAAATCGTTATG-ATCTTTGTTTTG
128 AGTTCAAATAGTTATGACTATTTAAACAATTATCTA-TTTCAAATCGTTATGAATTTTTGTTTTG
* * * * * * * *
6703808 TCATAAAATAATTGTTTTTTATCATATAAGCTAATTC-AGATAAAAATAATTCTAATTTAATAAT
192 TCATAAAACAATTGTTTTGT-TCACAAAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAAT
** * ** * * * *
6703872 ATTTTAAAAATTAATAAAAAAGAGATTTAAAAAATAAATGTGCTTGTTGATC-AGTTTAAATAGT
255 ATTTTAAAAATT-AT---AAAGAGATTTAAAAAATAAATCAGTTTACTAAACTAATTTAAATAAT
* * * *
6703936 TAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGAC
316 TATGACTATTTGAACAATTATCTATTTCAAATC-TTTTGAC
** *
6703977 CTTTTATTTAATCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAAAAGAAAATAATACTA
1 CTTTTATTTTGTCATAAAACAATTGTTTCA-TTCATACAAGCTTATTCAAAAGAAAATAATACTA
* * * * *
6704042 ATTTATTAACT-TTTGGAAGATTAATAAGCAGGATATTTGAAAAACTAAATTTGTTTATCGAACA
65 ATTTATTAA-TATTTGAAAAATTAATAAGCAGGAGATTT-AAAAAATAAATTTGTTTATCAAACA
*
6704106 AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCGTTATGAATTTTTGTTTTGT
128 AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGAATTTTTGTTTTGT
* * * *
6704171 CATAAAACAATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTACTTTTCTTAATA
193 CATAAAACAATTGTTTT-GTTCACAAAAGCTTATTCAAAATAAAATAATACTA-ATTTATTAATA
* * * *
6704236 TTTTGAAAA-T-T-AAGAGATTTAAAAACTAAATCAGTTTACT-AACTTAGTTTAAGTAATTATG
256 TTTTAAAAATTATAAAGAGATTTAAAAAATAAATCAGTTTACTAAAC-TAATTTAAATAATTATG
* * *
6704297 GCCATTTGAACAATTATCTATTTCAAATCTTTATTAC
320 ACTATTTGAACAATTATCTATTTCAAATCTTT-TGAC
*
6704334 CTTTCATTTTGTCATAAAACAATTGTTT
1 CTTTTATTTTGTCATAAAACAATTGTTT
6704362 TTCCACATAC
Statistics
Matches: 863, Mismatches: 182, Indels: 113
0.75 0.16 0.10
Matches are distributed among these distances:
351 5 0.01
352 6 0.01
353 120 0.14
354 9 0.01
355 12 0.01
356 83 0.10
357 200 0.23
358 3 0.00
359 5 0.01
360 184 0.21
361 147 0.17
362 68 0.08
363 20 0.02
364 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (355 bp):
CTTTTATTTTGTCATAAAACAATTGTTTCATTCATACAAGCTTATTCAAAAGAAAATAATACTAA
TTTATTAATATTTGAAAAATTAATAAGCAGGAGATTTAAAAAATAAATTTGTTTATCAAACAAGT
TCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGAATTTTTGTTTTGTCAT
AAAACAATTGTTTTGTTCACAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTTA
AAAATTATAAAGAGATTTAAAAAATAAATCAGTTTACTAAACTAATTTAAATAATTATGACTATT
TGAACAATTATCTATTTCAAATCTTTTGAC
Found at i:6704621 original size:20 final size:19
Alignment explanation
Indices: 6704575--6704622 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
6704565 AAATTGTTAT
6704575 AATATT-TTTTTGTCATAA
1 AATATTATTTTTGTCATAA
6704593 AATAATTATTTTTGTTCATATA
1 AAT-ATTATTTTTG-TCATA-A
6704615 AAT-TTATT
1 AATATTATT
6704623 CAAAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 3 0.12
20 11 0.42
21 5 0.19
22 4 0.15
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (19 bp):
AATATTATTTTTGTCATAA
Found at i:6704822 original size:32 final size:31
Alignment explanation
Indices: 6704786--6704860 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 31
6704776 TAAAATTAAT
*
6704786 ATATATTATAGTATTA-AATATAACTAGTAAAA
1 ATATATTAAAGTATTATAATATAA-TA-TAAAA
* *
6704818 ATATATTTAAATTATTATAATATAATATATAA
1 ATATA-TTAAAGTATTATAATATAATATAAAA
6704850 ATACTATTAAA
1 ATA-TATTAAA
6704861 CTTTTTATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 17 0.46
33 13 0.35
34 7 0.19
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (31 bp):
ATATATTAAAGTATTATAATATAATATAAAA
Found at i:6704951 original size:19 final size:16
Alignment explanation
Indices: 6704912--6704942 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6704902 ATTAAAAGAT
6704912 TTAATCTATTTGATTA
1 TTAATCTATTTGATTA
6704928 TTAATCTATTTGATT
1 TTAATCTATTTGATT
6704943 TTTATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TTAATCTATTTGATTA
Found at i:6706431 original size:120 final size:120
Alignment explanation
Indices: 6706218--6706454 Score: 343
Period size: 120 Copynumber: 2.0 Consensus size: 120
6706208 TTTTAATCCG
**
6706218 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAAT
1 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAAT
* *
6706283 AAATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAATAGATTTTA
66 AAATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAGTAAATAGATTTTA
* * * *
6706338 AATAAG-TTTGTATGAATAGAAAA-AATTGTTTTATGACAAAACATAAGGTCATAGCAATTTGAA
1 AATAAGCTTT-TATGAACA-AAAATAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAA
* * *
6706401 ATAGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCAGTAAATAGATT
64 ATAAATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAGTAAATAGATT
6706455 CATTTTTTAA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
119 3 0.03
120 97 0.93
121 4 0.04
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.35
Consensus pattern (120 bp):
AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAAT
AAATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAGTAAATAGATTTTA
Found at i:6707377 original size:12 final size:11
Alignment explanation
Indices: 6707360--6707399 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
6707350 TATTCAAAAT
6707360 ATTAATTATTA
1 ATTAATTATTA
*
6707371 GATTAATTATAAA
1 -ATTAATTAT-TA
6707384 ATTAATTATTA
1 ATTAATTATTA
6707395 ATTAA
1 ATTAA
6707400 ACAATAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 6 0.24
12 18 0.72
13 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
ATTAATTATTA
Found at i:6707396 original size:19 final size:18
Alignment explanation
Indices: 6707372--6707411 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
6707362 TAATTATTAG
6707372 ATTAATTATAA-AATTAATT
1 ATTAATTA-AACAA-TAATT
6707391 ATTAATTAAACAATAATT
1 ATTAATTAAACAATAATT
6707409 ATT
1 ATT
6707412 TATTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAATTAAACAATAATT
Found at i:6707406 original size:24 final size:24
Alignment explanation
Indices: 6707360--6707406 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6707350 TATTCAAAAT
**
6707360 ATTAATTATTAGATTAATTATAAA
1 ATTAATTATTAGATTAACAATAAA
6707384 ATTAATTATTA-ATTAAACAATAA
1 ATTAATTATTAGATT-AACAATAA
6707407 TTATTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
ATTAATTATTAGATTAACAATAAA
Found at i:6708343 original size:13 final size:13
Alignment explanation
Indices: 6708325--6708442 Score: 52
Period size: 13 Copynumber: 9.3 Consensus size: 13
6708315 ATAACTATCC
*
6708325 TAATATATAATGA
1 TAATATATAATAA
*
6708338 TAATATATATTAA
1 TAATATATAATAA
*
6708351 TAATAT-TAGTAA
1 TAATATATAATAA
*
6708363 T--TATA-AATAT
1 TAATATATAATAA
* *
6708373 TATTTTAATTAATAA
1 TAATAT-A-TAATAA
*
6708388 TAATATATATTAA
1 TAATATATAATAA
* *
6708401 TTAAT-TAAAATAT
1 -TAATATATAATAA
* *
6708414 TAA-AAATTTATAA
1 TAATATA-TAATAA
6708427 TAATATA-AATAA
1 TAATATATAATAA
6708439 TAAT
1 TAAT
6708443 TAATTAAATA
Statistics
Matches: 76, Mismatches: 19, Indels: 21
0.66 0.16 0.18
Matches are distributed among these distances:
10 7 0.09
12 20 0.26
13 34 0.45
14 7 0.09
15 8 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (13 bp):
TAATATATAATAA
Found at i:6708383 original size:18 final size:19
Alignment explanation
Indices: 6708349--6708415 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
6708339 AATATATATT
* *
6708349 AATAATATTAGTAATTATA
1 AATATTATTATTAATTATA
6708368 AATATTATT-TTAATTAATAA
1 AATATTATTATTAATT-AT-A
6708388 TAATATATATTAATTAATTA-A
1 -AATAT-TATT-ATTAATTATA
6708409 AATATTA
1 AATATTA
6708416 AAAATTTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
18 5 0.12
19 12 0.30
20 6 0.15
21 6 0.15
22 4 0.10
23 1 0.03
24 6 0.15
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (19 bp):
AATATTATTATTAATTATA
Found at i:6708383 original size:25 final size:24
Alignment explanation
Indices: 6708332--6708449 Score: 79
Period size: 25 Copynumber: 5.1 Consensus size: 24
6708322 TCCTAATATA
* * *
6708332 TAATGATAATATATATTAATAATAT
1 TAATAATAATAAATATTAATTA-AT
* * *
6708357 TAGTAATTATAAATATTATTTTAAT
1 TAATAATAATAAATATTA-ATTAAT
*
6708382 TAATAATAATATATATTAATTAAT
1 TAATAATAATAAATATTAATTAAT
* *
6708406 TAA-AAT-ATTAA-A--AATTTA-
1 TAATAATAATAAATATTAATTAAT
*
6708424 TAATAAT-ATAAATAATAATTAAT
1 TAATAATAATAAATATTAATTAAT
6708447 TAA
1 TAA
6708450 ATACAAATAT
Statistics
Matches: 72, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
18 3 0.04
19 12 0.17
20 1 0.01
21 1 0.01
22 8 0.11
23 6 0.08
24 8 0.11
25 31 0.43
26 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TAATAATAATAAATATTAATTAAT
Found at i:6708401 original size:16 final size:16
Alignment explanation
Indices: 6708327--6708401 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
6708317 AACTATCCTA
*
6708327 ATATA-TAATGATAAT
1 ATATATTAATAATAAT
*
6708342 ATATATTAATAATATT
1 ATATATTAATAATAAT
*
6708358 AGTA-ATT-ATAAATATT
1 A-TATATTAAT-AATAAT
*
6708374 ATTTTAATTAATAATAAT
1 A-TAT-ATTAATAATAAT
6708392 ATATATTAAT
1 ATATATTAAT
6708402 TAATTAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
15 7 0.15
16 26 0.54
17 4 0.08
18 9 0.19
19 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATATTAATAATAAT
Found at i:6708462 original size:39 final size:42
Alignment explanation
Indices: 6708382--6708463 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 42
6708372 TTATTTTAAT
* * *
6708382 TAATAATAATATATATTAATTAATTAAAATATTAAAAATTTA
1 TAATAATAATAAATAATAATTAATTAAAATATCAAAAATTTA
*
6708424 TAATAAT-ATAAATAATAATTAATT-AAATA-CAAATATTTA
1 TAATAATAATAAATAATAATTAATTAAAATATCAAAAATTTA
6708463 T
1 T
6708464 TCAAAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 9 0.25
40 5 0.14
41 15 0.42
42 7 0.19
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (42 bp):
TAATAATAATAAATAATAATTAATTAAAATATCAAAAATTTA
Found at i:6709390 original size:182 final size:179
Alignment explanation
Indices: 6708867--6709458 Score: 614
Period size: 182 Copynumber: 3.3 Consensus size: 179
6708857 TTTGTTTATA
*
6708867 TAAGCTTACTTTG-AATAAAATAATACAAATTTATTAATATT--AAGACAATTAATAAGTAAAG-
1 TAAGCTTA-TTTGAAATAAAATAATACTAATTTATTAATATTCCAA-A-AATTAATAAGTAAAGA
* * * * *
6708928 ATTTAAAAAATAAATCTATTTATCGAACAAATTCAAAGT-GCTATGACTATCTGAATAATTATTT
63 ATTAAAAAAATAAAT-TATTTATCGAACAAGTTCAAA-TAGTTATGACTATCTTAATAATTATCT
* * * * *
6708992 ATTTCAAATTC-TTATGACTTTTTTGTTTTCTCATAAAACAATTGTTTCTGTCCA-
126 ATTTCAAA-TCATTATAAC-ATTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
* * * * * * *
6709046 TACGAGCTTATTCGGATTAAAATAATATTGATTTATTAATATTTCAACAATTAATAAGTAAAAGA
1 TA--AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGT-AAAGA
* * * * *
6709111 TTTAAAAAAA-AAA--GTTTACCAAACAAGTTCAAATAGTCATGACTAT-TTAAATAATTATCTA
63 ATTAAAAAAATAAATTATTTATCGAACAAGTTCAAATAGTTATGACTATCTT-AATAATTATCTA
* * * * *
6709172 TTTCAAATCATTGTAACATTTTATTTTGTAATAAAACAATCGTTTCAATTCAT
127 TTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
* *
6709225 GTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAAAAGTAAGAGAA
1 -TAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-AGAA
* *
6709290 TTAAAAAAATAAATTTATTTATCGAACAAGTTCAAATAGTTATGACTATCTTAATACTTCTCTAT
64 TTAAAAAAATAAA-TTATTTATCGAACAAGTTCAAATAGTTATGACTATCTTAATAATTATCTAT
* * *
6709355 TTCAAAACATTATAACCTTTTGTTTTGTCATAAAACAATTGGTTCTATTCAT
128 TTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
* * *
6709407 TCAAGCTTATTTCAAATAAAATAATA-TAAATTTATTGATGTTCCAAAAATTA
1 T-AAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATTCCAAAAATTA
6709459 GTATACGAAA
Statistics
Matches: 339, Mismatches: 54, Indels: 37
0.79 0.13 0.09
Matches are distributed among these distances:
177 2 0.01
178 90 0.27
179 53 0.16
180 4 0.01
181 43 0.13
182 135 0.40
183 12 0.04
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (179 bp):
TAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAGAATT
AAAAAAATAAATTATTTATCGAACAAGTTCAAATAGTTATGACTATCTTAATAATTATCTATTTC
AAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
Found at i:6710509 original size:181 final size:180
Alignment explanation
Indices: 6709542--6710745 Score: 1026
Period size: 181 Copynumber: 6.7 Consensus size: 180
6709532 ACTATTCAGG
* * * * * *
6709542 ATAAAATAATACTATTTTATTACTATTTTGAAAATTAATAAG--AGATTTAAAAACTAAATCTCT
1 ATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGATTTAAAAAATAAATCTGT
* * * ** *
6709605 TTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAATTGTTATGA-TT
66 TTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCT
* * * *
6709669 TTTGTTTTGTCCA-AAAACATTTAATTTCTGTTCA-ACAAGCTTATTCAAA
131 TTTGTTTTGT-CATAAAACAATTGATTTTTCTTCATACAAGCTTATTCAAA
* * ** * * * * *
6709718 GTAAAATATTGTTAAATTAATAATATTCTAAACATTAATAAGTAACGATTTAAAAAATAAATATG
1 ATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAA-GATTTAAAAAATAAATCTG
* * * * ** * ** * *
6709783 TTTGCTGAATCAGTTTAAATAGTTAAGACTATTAAAACAATTATCTATTTTAAATTGTTTTGACT
65 TTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * *** * *
6709848 TTTTGTTTAGTCATAAAATAATTGCTTCAAC-TCATACATGCTTATTCGAA
130 TTTTGTTTTGTCATAAAACAATTGATTTTTCTTCATACAAGCTTATTCAAA
* * * * *
6709898 ATAAAATAATACTAATTTATTAACATTCA-AAAAATTATTAAGGAAGAAATTAGTAAAA-AAATC
1 ATAAAATAATACTAATTTATTAATATT-ATAAAAATTAATAAGTAAG-ATTTA-AAAAATAAATC
* * * * * *
6709961 TATTTACCGAA-CAAGTTTAAATATTTTTTACTATTTGAACAATTATCTATTTAAAATCATTATT
63 TGTTTACCGAATC-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTA-T
* * *
6710025 GACCTTATAT-TTTTATCATAAAAACAATTG-TTTTTAGTTCATAAAAGCTTA-TCTAAA
126 GACCTT-T-TGTTTTGTCAT-AAAACAATTGATTTTT-CTTCATACAAGCTTATTC-AAA
* * * *
6710082 ATAAAATAATATTATTTTATTAAATATTATAAAAATTTGATAAGTTAGAGATTTAAAACATAAAT
1 ATAAAATAATACTAATTTATT-AATATTATAAAAA-TTAATAAG-TA-AGATTTAAAAAATAAAT
* * * * * * * * *
6710147 CAGTTTATCAAATTAGTTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAATCATTATA
62 CTGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
* * * * *
6710212 AACTTTTGTTTTGCCATAAAACAATTGTTTTTTTTATCATACAAGCCTATTCAAA
127 ACCTTTTGTTTTGTCATAAAACAATTGATTTTTCT-TCATACAAGCTTATTCAAA
6710267 ATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAAGTAGGAGATTTAAAAAATAAATC
1 ATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAGTA--AGATTTAAAAAATAAATC
* * * * * *
6710331 TGTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTCCCAATCATTATAA
63 TGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
* **
6710396 CCTTTTGTTTTGTCATAAAACAATT-ATTTATCTTCATACAAGCTTATTTGAA
128 CCTTTTGTTTTGTCATAAAACAATTGATTTTTCTTCATACAAGCTTATTCAAA
* * * * * *
6710448 ATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTTATAGATTTAAAAAATAAATTT
1 ATAAAATAATACTAATTTATTAATATTATAAAAATTAATAA-GTA-AGATTTAAAAAATAAATCT
* * * * * * *
6710513 GTTTACCGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCGTTATGAC
64 GTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * * * * *
6710578 CTTTTGTTTTGTCGTAAAACAAATG-TTTTTATTCATATAAGTTTGTTCAAA
129 CTTTTGTTTTGTCATAAAACAATTGATTTTTCTTCATACAAGCTTATTCAAA
* * *
6710629 ATAAAATAATATTAATTTATTAATATT-TCAAAAATTAATAAG--AGATTTAATAAATAAATCTA
1 ATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAGTAAGATTTAAAAAATAAATCTG
* * * * * *
6710691 TTTA-C-TATACTAGTTCAATTAGTTATAACAATTTGAACATTTATTTATTTCAAAT
65 TTTACCGAAT-C-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
6710746 TGTACTAAAT
Statistics
Matches: 818, Mismatches: 174, Indels: 71
0.77 0.16 0.07
Matches are distributed among these distances:
175 1 0.00
176 33 0.04
177 55 0.07
178 1 0.00
179 75 0.09
180 122 0.15
181 208 0.25
182 20 0.02
183 115 0.14
184 56 0.07
185 56 0.07
186 16 0.02
187 58 0.07
188 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
ATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTAAGATTTAAAAAATAAATCTGT
TTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCT
TTTGTTTTGTCATAAAACAATTGATTTTTCTTCATACAAGCTTATTCAAA
Found at i:6711065 original size:25 final size:25
Alignment explanation
Indices: 6711022--6711069 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
6711012 CTAATATTTT
6711022 TTATTATTAATATCAATATTAATTA
1 TTATTATTAATATCAATATTAATTA
*
6711047 TTATTAATTAAT-TCTATATTAAT
1 TTATT-ATTAATATCAATATTAAT
6711070 ATTTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
TTATTATTAATATCAATATTAATTA
Found at i:6711596 original size:179 final size:178
Alignment explanation
Indices: 6711103--6711734 Score: 515
Period size: 175 Copynumber: 3.6 Consensus size: 178
6711093 TTAGTTGTCT
* * * * * *
6711103 AAATAGTCATAACTATTTAAATTTGTTCAATAAACGAATTTATTTTTTCAAATCTTTTGCTTATT
1 AAATAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTT-AAATCTCTTACTTATT
* * * * * * *
6711168 AATTTTTTGAATGTTAATAAATTTAG-ATTATTTTATTCCAAATAAGCATGTAAGAT-ATAAAAC
65 AATTTTTT-AATATTAA-AAAATTAGTATTATTTTATTACGAATAAGCTTGTATGATCA-AAAAT
* * * * ** *
6711231 AAGTATTTTTTGACTAAACATAAAATTGGAATGATTTGAAATAGATAAT-TAC
127 AAATATTTTATGACAAAACA-AAGATTATAATGATTTGAAATAGATAATATTC
* ** * *
6711283 TAATAGTTGTAACTATTTGAATTGGTTCAGCA-AAA-AAATTTCTATTTTAAATCTCTTA-TTA-
1 AAATAGTCATAACTATTTGAATTGGTTC-G-ATAAACAAATTTATTTTTTAAATCTCTTACTTAT
** ** * *
6711344 -AATTTTGAAATATTATTAAATTAGTATTATTTT-TAACTGAATAAGCTTCTATGA-CAAGAAAT
64 TAATTTTTTAATATTAAAAAATTAGTATTATTTTATTAC-GAATAAGCTTGTATGATCAA-AAAT
* * *
6711406 AATTGTTTTATGACAAAACAAAGATCT-TAATGATTT-AAGATTGATAATATTC
127 AAATATTTTATGACAAAACAAAGAT-TATAATGATTTGAA-ATAGATAATATTC
* * *
6711458 AAATAGTCATAATTATTTGAATTGGTTCGATAAACATATATATTTTTTAAATCTCTTACTTATTA
1 AAATAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATTA
* *
6711523 ATTTTTTATATATTAAAAAATTAGTAATATTTTATTTCGAATAAGCTTGTATGATCAAAAATAAA
66 ATTTTTTA-ATATTAAAAAATTAGTATTATTTTATTACGAATAAGCTTGTATGATCAAAAATAAA
* **
6711588 TATTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATAATTC
130 TATTTTATGACAAAAC-AAAGATTATAATGATTTGAAATAGATAAT-ATTC
* * * * * * * *
6711639 AAAT-GACCATAATTATTTTAATTGATTCGGTAAACAAATTTA-TTTTAAAATTTCTTA-TTGTT
1 AAATAG-TCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATT
**** *
6711701 --TTAAGAAATATTAATAAATTAGTATTATTTTATT
65 AATTTTTTAATATTAAAAAATTAGTATTATTTTATT
6711735 CCCTCTAAGC
Statistics
Matches: 361, Mismatches: 69, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
173 3 0.01
174 33 0.09
175 92 0.25
176 34 0.09
177 3 0.01
178 10 0.03
179 70 0.19
180 72 0.20
181 43 0.12
182 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (178 bp):
AAATAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATTA
ATTTTTTAATATTAAAAAATTAGTATTATTTTATTACGAATAAGCTTGTATGATCAAAAATAAAT
ATTTTATGACAAAACAAAGATTATAATGATTTGAAATAGATAATATTC
Found at i:6711772 original size:176 final size:180
Alignment explanation
Indices: 6711337--6711819 Score: 436
Period size: 176 Copynumber: 2.7 Consensus size: 180
6711327 TTTTAAATCT
** * * ** *
6711337 CTTATTAAATTTT-GAAATATTATTAAATTAGTATTATTTT-TAACTGAATAAGCTTCTATG-AC
1 CTTATT-AATTTTAGAAATATTAAAAAATTAGTAATATTTTAT-TCCCAATAAGCTTATATGAAC
* *
6711399 AAGAAATAATTGTTTTATGACAAAAC-AAAGATCT-TAATGATTTAAGATTGATAATATTCAAAT
64 AA-AAATAATTGTTTTATGACAAAACAAAAGGT-TATAATGATTTAA-ATAGATAATATTCAAAT
* * *
6711462 -AGTCATAATTATTTGAATTGGTTCGATAAACATATATATTTTTTAAATCTCTTA
126 GAGCCATAATTATTTGAATTGATTCGATAAACATATATATTTTTTAAATATCTTA
** * * * * *
6711516 CTTATTAATTTTTTATATATTAAAAAATTAGTAATATTTTATTTCGAATAAGCTTGTATGATCAA
1 CTTATTAATTTTAGAAATATTAAAAAATTAGTAATATTTTATTCCCAATAAGCTTATATGAACAA
* * **
6711581 AAATAAATATTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATAATTCAAATGA-
66 AAATAATTGTTTTATGACAAAACAAAAGGTTATAATGATTT-AAATAGATAAT-ATTCAAATGAG
* *
6711645 CCATAATTATTTTAATTGATTCGGTAAACA-A-AT-TTATTTTAAA-AT-TT-
129 CCATAATTATTTGAATTGATTCGATAAACATATATATT-TTTTAAATATCTTA
* * * ** * *
6711692 CTTATT-GTTTTAAGAAATATTAATAAATTAGTATTATTTTATTCCCTCTAAGCTTATATTAACT
1 CTTATTAATTTT-AGAAATATTAAAAAATTAGTAATATTTTATTCCCAATAAGCTTATATGAACA
* * * * *
6711756 TAAATAATTGTTTTATGATAAATCAAAAGGTTATAATGATTTTAAATAGAAAATTGTTCAAATG
65 AAAATAATTGTTTTATGACAAAACAAAAGGTTATAATGA-TTTAAATAGATAA-TATTCAAATG
6711820 GTAAACAAAT
Statistics
Matches: 248, Mismatches: 44, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
175 4 0.02
176 94 0.38
177 6 0.02
178 9 0.04
179 73 0.29
180 25 0.10
181 36 0.15
182 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (180 bp):
CTTATTAATTTTAGAAATATTAAAAAATTAGTAATATTTTATTCCCAATAAGCTTATATGAACAA
AAATAATTGTTTTATGACAAAACAAAAGGTTATAATGATTTAAATAGATAATATTCAAATGAGCC
ATAATTATTTGAATTGATTCGATAAACATATATATTTTTTAAATATCTTA
Found at i:6712400 original size:181 final size:179
Alignment explanation
Indices: 6711896--6712565 Score: 555
Period size: 181 Copynumber: 3.7 Consensus size: 179
6711886 ATAAGCTTGT
* * * * * *
6711896 ATGAACTAAAACAATTTTTTTATAACTAAACAAAAGGTCAGAATAATTTTAAATAGATAATTATT
1 ATGAAC-AAAACAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATAGATAATTATT
** * * * ** * * *
6711961 TTAATAGTCTTAACCATTTGAACTTATT-TGTAAACAAATTTATTGTTTAAATTTCTTACTTATT
65 CAAACAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT-TTTAAATCTCTTACTAATT
** * *
6712025 AATTTT-TAAAATATTATTAAATTAGTATTATTTTA--ATCAGAATAAGCTTGT
129 AATTTTCT-AAATATTATTAAATTAGTATTATTTTATTAT-A-AATAAAATAGC
* * * * * * *
6712076 ATGAACAAAACAATTGTTTTACGATAAAAGAAAAGGTCAAAATGATTTAAAATAGATAATCATTC
1 ATGAACAAAACAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATAGATAATTATTC
* * * ** ** * * * * ** *
6712141 ATATCA-TCGTAACTATTTTAACTGGTTCAACAATTAGATTTGTTTTTTAATTTTCTTGGTTATT
66 A-AACAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTT-ATTTTTAAATCTCTTACTAATT
* * * *
6712205 AAGTTTCGAAATATTATTAAAATAATATTATTTTATTATAAATAAAATAGC
129 AATTTTCTAAATATTATTAAATTAGTATTATTTTATTATAAATAAAATAGC
* * * *
6712256 ATGAACAAAACCAATTATTTAATGACAAAATAAAAGGTTATAACAATTTGAAATAGATAATTATT
1 ATGAACAAAA-CAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATAGATAATTATT
* * *
6712321 CAAACAGTCAAAACTATTTGAAATGGTTTAGTAAACAAATTTACTTTTTAAATCTCTTACTAATT
65 CAAACAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTA-TTTTTAAATCTCTTACTAATT
* * * * * *
6712386 AATTTTCTAAATATTAATAAATTAGTATTATTTTATTTTGAACAAACTTATC
129 AATTTTCTAAATATTATTAAATTAGTATTATTTTATTATAAATAAA-ATAGC
* * * * *
6712438 -TTAACAAAAACAATTGTTTTATGACAAAATAAAAAGTAATAATGATTTGAAATAAATAATTATT
1 ATGAAC-AAAACAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATAGATAATTATT
* * * * *
6712502 CAAATAGTTATAATTATTTGAATTGGTTCAGTAAATAGAA-TTATTTTCTAAATCTCTTA-TAAT
65 CAAACAGTCATAACTATTTGAACTGGTTCAGTAAACA-AATTTATTTT-TAAATCTCTTACTAAT
6712565 T
128 T
6712566 TTTTGAAGTA
Statistics
Matches: 387, Mismatches: 90, Indels: 26
0.77 0.18 0.05
Matches are distributed among these distances:
179 64 0.17
180 90 0.23
181 222 0.57
182 11 0.03
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (179 bp):
ATGAACAAAACAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATAGATAATTATTC
AAACAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATTTTTAAATCTCTTACTAATTAA
TTTTCTAAATATTATTAAATTAGTATTATTTTATTATAAATAAAATAGC
Found at i:6715408 original size:22 final size:21
Alignment explanation
Indices: 6715377--6715426 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
6715367 ACAAAATTAT
6715377 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
6715399 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
6715420 TTAATAT
1 TTAATAT
6715427 TGATAAACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:6715581 original size:23 final size:23
Alignment explanation
Indices: 6715555--6715604 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
6715545 ATAATCTAGA
6715555 TATTAA-ATTAATAATAATTAAT-T
1 TATTAATA-TAAT-ATAATTAATAT
*
6715578 TATTATTATAATATAATTAATAT
1 TATTAATATAATATAATTAATAT
6715601 TATT
1 TATT
6715605 TTATTAGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 9 0.38
23 14 0.58
24 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTAATATAATATAATTAATAT
Found at i:6715588 original size:20 final size:22
Alignment explanation
Indices: 6715563--6715608 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
6715553 GATATTAAAT
6715563 TAATAATAATTAAT-TTATTATTA
1 TAAT-ATAATTAATATTATT-TTA
6715586 TAATATAATTAATATTATTTTA
1 TAATATAATTAATATTATTTTA
6715608 T
1 T
6715609 TAGATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATATAATTAATATTATTTTA
Found at i:6715607 original size:28 final size:26
Alignment explanation
Indices: 6715555--6715610 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
6715545 ATAATCTAGA
6715555 TATTAAATTAATAATAATTAATTTAT
1 TATTAAATTAATAATAATTAATTTAT
*
6715581 TATTATAATATAATTAAT-ATTATTTTAT
1 TATTA-AAT-TAA-TAATAATTAATTTAT
6715609 TA
1 TA
6715611 GATTAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 5 0.19
27 3 0.12
28 14 0.54
29 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TATTAAATTAATAATAATTAATTTAT
Found at i:6715617 original size:28 final size:25
Alignment explanation
Indices: 6715555--6715604 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 25
6715545 ATAATCTAGA
6715555 TATTAAATTAATAATAATTAATTTAT
1 TATT-AATTAATAATAATTAATTTAT
6715581 TATT-A-TAAT-ATAATTAATATTAT
1 TATTAATTAATAATAATTAAT-TTAT
6715604 T
1 T
6715605 TTATTAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 9 0.39
23 9 0.39
24 1 0.04
26 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTAATTAATAATAATTAATTTAT
Found at i:6715827 original size:18 final size:18
Alignment explanation
Indices: 6715804--6715843 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
6715794 AAATATATTA
6715804 TATAATTTATAATAT-AAT
1 TATAA-TTATAATATAAAT
*
6715822 TATAATTATATTATAAAT
1 TATAATTATAATATAAAT
6715840 TATA
1 TATA
6715844 TAATATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATAATTATAATATAAAT
Found at i:6716194 original size:14 final size:14
Alignment explanation
Indices: 6716175--6716209 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
6716165 CTTACTTTAA
6716175 ATTATAATAAATTT
1 ATTATAATAAATTT
*
6716189 ATTATACTAAATTT
1 ATTATAATAAATTT
*
6716203 ATAATAA
1 ATTATAA
6716210 GATTATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTATAATAAATTT
Found at i:6716411 original size:17 final size:17
Alignment explanation
Indices: 6716385--6716456 Score: 62
Period size: 17 Copynumber: 4.3 Consensus size: 17
6716375 GTTTATTATA
* *
6716385 TAATATTATATTATATT
1 TAATAATATATTAAATT
6716402 TAATAATATA--AAATT
1 TAATAATATATTAAATT
*
6716417 TAA-AATAGATTAATATT
1 TAATAATATATTAA-ATT
6716434 TGAATAATA-ATATAAATT
1 T-AATAATATAT-TAAATT
6716452 TAATA
1 TAATA
6716457 TAAACAATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
14 5 0.11
15 7 0.15
16 2 0.04
17 17 0.37
18 8 0.17
19 7 0.15
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TAATAATATATTAAATT
Found at i:6717612 original size:20 final size:20
Alignment explanation
Indices: 6717587--6717625 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
6717577 TTAATGACTC
6717587 AATCAATTAATATTAATTAT
1 AATCAATTAATATTAATTAT
6717607 AATCAATTAATATTAATTA
1 AATCAATTAATATTAATTA
6717626 ATTATGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (20 bp):
AATCAATTAATATTAATTAT
Found at i:6717847 original size:20 final size:22
Alignment explanation
Indices: 6717824--6717864 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6717814 ATATTTAAAA
6717824 TTTAAAT-ATT-TATATTATAT
1 TTTAAATAATTATATATTATAT
*
6717844 TTTAATTAATTATATATTATA
1 TTTAAATAATTATATATTATA
6717865 ATTAAATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTAAATAATTATATATTATAT
Found at i:6717861 original size:17 final size:17
Alignment explanation
Indices: 6717839--6717891 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
6717829 ATATTTATAT
6717839 TATATTTTAATTAATTA
1 TATATTTTAATTAATTA
*
6717856 TATATTATAATTAAATTA
1 TATATTTTAATT-AATTA
* * *
6717874 GAT-TATTATTTAATTA
1 TATATTTTAATTAATTA
6717890 TA
1 TA
6717892 ACAATTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTTAATTAATTA
Found at i:6717862 original size:22 final size:23
Alignment explanation
Indices: 6717834--6717889 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
6717824 TTTAAATATT
* *
6717834 TATATTATATTTTAATTA-ATTA
1 TATATTATAATTAAATTAGATTA
6717856 TATATTATAATTAAATTAGATTA
1 TATATTATAATTAAATTAGATTA
6717879 T-TATT-TAATTA
1 TATATTATAATTA
6717890 TAACAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TATATTATAATTAAATTAGATTA
Found at i:6718867 original size:181 final size:180
Alignment explanation
Indices: 6718639--6718974 Score: 406
Period size: 181 Copynumber: 1.9 Consensus size: 180
6718629 TTGATCGATA
* * * ** * *
6718639 AGAAACAATTGTTTTACAACCAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AGAAACAATTATTTTACAACAAAACAAAAAATCATAACAATTTGAAATAAATAATAGTTCAAA-C
* * *** * *
6718704 GA-CATGACTATTTGAACTGGTTCAGTAAACTAATTAATTTTTTAAATCTTCAACTTATTAATTT
65 AATCATAACTATTTGAACTCACTCAATAAACAAATTAATTTTTTAAATCTTCAACTTATTAATTT
* * *
6718768 TTAGAATGTTAA-TATATTAGTATTATTTTATTTGAAATAAACTTGTATGAAT
130 TGA-AATATTAACTA-ATTAGAATTATTTTATTTGAAATAAACTTGTATGAAT
* * * *
6718820 AGAAACAATTATTTTATAACAAAACAAAAAATCATAACGATTTGAAATAAATAATTGTTTAAACA
1 AGAAACAATTATTTTACAACAAAACAAAAAATCATAACAATTTGAAATAAATAATAGTTCAAACA
* * **
6718885 ATCATAACTATTTGAACTCACTCAATAAACAAATTTATTTTTTCAATCTTTTACTTATTAATTTT
66 ATCATAACTATTTGAACTCACTCAATAAACAAATTAATTTTTTAAATCTTCAACTTATTAATTTT
6718950 GAAATATTAACTAATTAGAATTATT
131 GAAATATTAACTAATTAGAATTATT
6718975 AATTATTATA
Statistics
Matches: 128, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
180 19 0.15
181 109 0.85
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (180 bp):
AGAAACAATTATTTTACAACAAAACAAAAAATCATAACAATTTGAAATAAATAATAGTTCAAACA
ATCATAACTATTTGAACTCACTCAATAAACAAATTAATTTTTTAAATCTTCAACTTATTAATTTT
GAAATATTAACTAATTAGAATTATTTTATTTGAAATAAACTTGTATGAAT
Found at i:6718976 original size:31 final size:31
Alignment explanation
Indices: 6718939--6719003 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
6718929 AATCTTTTAC
6718939 TTATTAATT-TTGA-AATATTAACTAATTAGAA
1 TTATTAATTATT-ATAAT-TTAACTAATTAGAA
* *
6718970 TTATTAATTATTATAATTTAATTAATTATAA
1 TTATTAATTATTATAATTTAACTAATTAGAA
6719001 TTA
1 TTA
6719004 AATATGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 25 0.83
32 5 0.17
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (31 bp):
TTATTAATTATTATAATTTAACTAATTAGAA
Found at i:6718999 original size:15 final size:14
Alignment explanation
Indices: 6718973--6719002 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
6718963 ATTAGAATTA
6718973 TTAATTATTATAAT
1 TTAATTATTATAAT
6718987 TTAATTAATTATAAT
1 TTAATT-ATTATAAT
6719002 T
1 T
6719003 AAATATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAATTATTATAAT
Found at i:6720016 original size:279 final size:279
Alignment explanation
Indices: 6719516--6720057 Score: 895
Period size: 279 Copynumber: 1.9 Consensus size: 279
6719506 TAAACCTAAG
6719516 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAAATAT
1 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAAATAT
* * ** *
6719581 AATATTAGTTATTTAAACTTTTAACAGGCCCTCATCGTGTGTAGGTGAAGAGGAAAGAAGCCTTC
66 AATATTAGTTATTTAAACTTTTAACAAGCCCCCATCACGTGTAGGTGAAGAAGAAAGAAGCCTTC
* * * *
6719646 CACGTGACAAATTAGGAAAGGGTAACAGAAAGAAAGTCTTGGCTCTCATACCATATGGAAAAACT
131 CACGTGACAAATTAGGAAAAGGCAACAGAAAGAAAGTCCTGGCTCTCATACCATATGAAAAAACT
* *
6719711 AAGAAATAAAATTGTGTAAAAAACTAAGAGTAAAACTAAATGTATATTGAAAAACTACTCATAAA
196 AAGAAATAAAAATATGTAAAAAACTAAGAGTAAAACTAAATGTATATTGAAAAACTACTCATAAA
6719776 GAATTATACTAGCAATTAT
261 GAATTATACTAGCAATTAT
*
6719795 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAGATAT
1 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAAATAT
*
6719860 AATATTAGTTATTTAAACTTTTAACAAGCCCCCATCACGTGTAGGTGAAGAAGAAAGAAGCCTTT
66 AATATTAGTTATTTAAACTTTTAACAAGCCCCCATCACGTGTAGGTGAAGAAGAAAGAAGCCTTC
** * * * *
6719925 CATTTGACAAATTAGTAAAAGGCAACGGAAAGAAAGTCCTGGCTCTCATGCCATGTGAAAAAACT
131 CACGTGACAAATTAGGAAAAGGCAACAGAAAGAAAGTCCTGGCTCTCATACCATATGAAAAAACT
* *
6719990 AAGAAATAAAAATATGTGAAAAACTAAGAGTAAAACTAAATGTATATTGAAAAACTGCTCATAAA
196 AAGAAATAAAAATATGTAAAAAACTAAGAGTAAAACTAAATGTATATTGAAAAACTACTCATAAA
6720055 GAA
261 GAA
6720058 ATATCAATAT
Statistics
Matches: 242, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
279 242 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (279 bp):
GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAAATAT
AATATTAGTTATTTAAACTTTTAACAAGCCCCCATCACGTGTAGGTGAAGAAGAAAGAAGCCTTC
CACGTGACAAATTAGGAAAAGGCAACAGAAAGAAAGTCCTGGCTCTCATACCATATGAAAAAACT
AAGAAATAAAAATATGTAAAAAACTAAGAGTAAAACTAAATGTATATTGAAAAACTACTCATAAA
GAATTATACTAGCAATTAT
Found at i:6721214 original size:18 final size:18
Alignment explanation
Indices: 6721161--6721217 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
6721151 GTCACAAAAC
* *
6721161 AAATAGTCATTACAATTT
1 AAATAGTCATAACTATTT
* *
6721179 GAAATAG--ATAATTGTTT
1 -AAATAGTCATAACTATTT
6721196 AAATAGTCATAACTATTT
1 AAATAGTCATAACTATTT
6721214 AAAT
1 AAAT
6721218 GTGTTCAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
16 6 0.20
17 6 0.20
18 12 0.40
19 6 0.20
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (18 bp):
AAATAGTCATAACTATTT
Found at i:6721458 original size:181 final size:179
Alignment explanation
Indices: 6721154--6721712 Score: 571
Period size: 179 Copynumber: 3.1 Consensus size: 179
6721144 TTCCAATGTC
* * **
6721154 ACAAAACAAATAGTCATTACAATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTT-AAAT
1 ACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTGAAAT
* ** * * **
6721218 GTGTTCAAAAAAATAAATTTATTGTTTAAAT-TATTATTTATTAATTTTTTTAATATTAATAAAT
66 -TATTC-AGTAAATAAATTTATTTTTTAAATCTATTACTTATTAATTTTTGAAATATTAATAAAT
* * * *
6721282 TTATATTATTTTATTCGAAATAAGCTTTCATGAATAGATCCAATTGCTTTCTG
129 TTATATTATTTTATTCG-AATAAGCTTTCATAAATAGA-ACAATTGTTTTATG
* *
6721335 ACAAAACAAAAAGTCATAATG-TGTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTGAAC
1 ACAAAACAAAAAGTCATAATGAT-TTGAAATAGATAATTGTTTAAATAGTCATAACTATTTGAAA
* ** * * * *
6721399 TT-TTCAGTAAACAAATTCGTTTTATTAATTCTCTTACTCATTCATTTTTGAAATATTAATAAA-
65 TTATTCAGTAAATAAATTTATTTT-TTAAATCTATTACTTATTAATTTTTGAAATATTAATAAAT
** * * * *
6721462 TTAGTATTATTTTATTTTTAATAA--TTTACATTAACATAACAATTGTTTTATT
129 TTA-TATTATTTTA-TTCGAATAAGCTTT-CATAAATAGAACAATTGTTTTATG
* * * *
6721514 ACAAAACAAAAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAGTCA-GACTATTTGAAA
1 ACAAAACAAAAA-GTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTGAAA
* * *
6721578 TTATTCAGTAAATATATTTATTTTTTAAATCTTTTACTTATTAATTATTGAAATATTAATAAATT
65 TTATTCAGTAAATAAATTTATTTTTTAAATCTATTACTTATTAATTTTTGAAATATTAATAAATT
* * *
6721643 AATATTATTTTAATCCGAATAGGCTTGT--TAAATAGAAACAATTGTTTTATG
130 TATATTATTTT-ATTCGAATAAGCTT-TCATAAATAG-AACAATTGTTTTATG
6721694 ACAAAACAAAAAGTCATAA
1 ACAAAACAAAAAGTCATAA
6721713 CAATTATCTA
Statistics
Matches: 309, Mismatches: 53, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
179 107 0.35
180 98 0.32
181 98 0.32
182 6 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (179 bp):
ACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTGAAAT
TATTCAGTAAATAAATTTATTTTTTAAATCTATTACTTATTAATTTTTGAAATATTAATAAATTT
ATATTATTTTATTCGAATAAGCTTTCATAAATAGAACAATTGTTTTATG
Found at i:6722125 original size:20 final size:20
Alignment explanation
Indices: 6722102--6722154 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 20
6722092 TATTAATAGT
*
6722102 AATTATTAATATTTATGATA
1 AATTATTAATATTTATAATA
6722122 AATTA--AA-ATTTATAATA
1 AATTATTAATATTTATAATA
*
6722139 AATAATTAATATTTAT
1 AATTATTAATATTTAT
6722155 TATTAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 13 0.46
18 2 0.07
19 2 0.07
20 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AATTATTAATATTTATAATA
Found at i:6722162 original size:20 final size:20
Alignment explanation
Indices: 6722101--6722170 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
6722091 ATATTAATAG
* *
6722101 TAATTATTAATATTTATGA-
1 TAATAATTAATATTTATAAT
*
6722120 T-A-AATTAAAATTTATAAT
1 TAATAATTAATATTTATAAT
* *
6722138 AAATAATTAATATTTATTAT
1 TAATAATTAATATTTATAAT
*
6722158 TAATAAGTAATAT
1 TAATAATTAATAT
6722171 AAATAAATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
17 12 0.30
18 1 0.03
19 2 0.05
20 25 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATAATTAATATTTATAAT
Found at i:6722417 original size:21 final size:21
Alignment explanation
Indices: 6722393--6722443 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
6722383 TAATAATTAC
*
6722393 TTAATATTATTAACATAATGA
1 TTAATATTATTAACATAATCA
**
6722414 TTAATATTATTAGGATAATCA
1 TTAATATTATTAACATAATCA
6722435 TATAATATT
1 T-TAATATT
6722444 TTTATATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (21 bp):
TTAATATTATTAACATAATCA
Found at i:6722460 original size:17 final size:17
Alignment explanation
Indices: 6722438--6722494 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 17
6722428 ATAATCATAT
6722438 AATATTTTTATATATTA
1 AATATTTTTATATATTA
6722455 AATA--TTTA-A-ATTA
1 AATATTTTTATATATTA
6722468 AATATTTATTATAATATAATA
1 AATATTT-TTAT-ATAT--TA
6722489 AATATT
1 AATATT
6722495 AAACAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 8 0.25
14 1 0.03
15 5 0.16
16 3 0.09
17 4 0.12
18 1 0.03
19 2 0.06
21 8 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTTTTATATATTA
Found at i:6722521 original size:17 final size:18
Alignment explanation
Indices: 6722499--6722543 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
6722489 AATATTAAAC
*
6722499 AATTATATTATTAAT-TT
1 AATTATATTAATAATATT
6722516 AATTATA-TAATAATATT
1 AATTATATTAATAATATT
*
6722533 AATTTTATTAA
1 AATTATATTAA
6722544 ACAATTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 15 0.62
18 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTATATTAATAATATT
Found at i:6722608 original size:13 final size:14
Alignment explanation
Indices: 6722590--6722639 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 14
6722580 AATATTTAGA
6722590 TAATTAA-TAATAT
1 TAATTAATTAATAT
6722603 TAATTAATTAATAT
1 TAATTAATTAATAT
6722617 T--TT-ATT-ATAT
1 TAATTAATTAATAT
*
6722627 TAAATAATTAATA
1 TAATTAATTAATA
6722640 AGAATTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
10 5 0.16
11 3 0.10
12 3 0.10
13 10 0.32
14 10 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:6722623 original size:28 final size:28
Alignment explanation
Indices: 6722592--6722675 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 28
6722582 TATTTAGATA
6722592 ATTAATAATATTAATTAATTAATATTTT
1 ATTAATAATATTAATTAATTAATATTTT
* *
6722620 ATTATATTAA-A-TAATTAA-TAAGAATTT
1 ATTA-A-TAATATTAATTAATTAATATTTT
*
6722647 ATTTAAT-ATATTAAATAAATTAAGTATTT
1 A-TTAATAATATT-AATTAATTAA-TATTT
6722676 ATTTAATTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
25 1 0.02
26 2 0.05
27 10 0.23
28 19 0.44
29 5 0.12
30 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (28 bp):
ATTAATAATATTAATTAATTAATATTTT
Found at i:6722675 original size:29 final size:30
Alignment explanation
Indices: 6722617--6722682 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
6722607 TAATTAATAT
*
6722617 TTTATTATATTAAATAATTAATAAGAATTTA
1 TTTAATATATTAAATAA-TAATAAGAATTTA
* *
6722648 TTTAATATATTAAATAA-ATTAAGTATTTA
1 TTTAATATATTAAATAATAATAAGAATTTA
6722677 TTTAAT
1 TTTAAT
6722683 TAACTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (30 bp):
TTTAATATATTAAATAATAATAAGAATTTA
Found at i:6723543 original size:176 final size:178
Alignment explanation
Indices: 6723236--6723604 Score: 555
Period size: 176 Copynumber: 2.1 Consensus size: 178
6723226 TATGTAGGGG
* * *
6723236 GATCAATCCGTTTTCTGGAAAATTGCACGATGAAAACTTTCTGTATGAAAAAGTGATCGATCCCT
1 GATCGATCCCTTTTCTGAAAAATTGCACGATGAAAACTTTCTG-ATGAAAAAGTGATCGATCCCT
* *
6723301 TAAATGAAAAAGTCGATCTAGTCAGCTTGAAACCCCAACCAATCAATCCCTATAGGGAGGGGATC
65 CAAATGAAAAAGTCGATCTAGTCAGCTTGAAACCCCAACCAATCAATCCCTACAGGGAGGGGATC
*
6723366 GATTGGTTTTTGCCAAAACTTGAGGAATTTCGATTCTGGAAGAAAACAA
130 GATTGGTTTTTGCCAAAACTTGAGAAATTTCGATTCTGGAAGAAAACAA
* *
6723415 GATCGATCCTTTTTCTGAAAAATTGCATGATGAAAACTTTCTG-TGAAAAAGTGATCGATCCCTC
1 GATCGATCCCTTTTCTGAAAAATTGCACGATGAAAACTTTCTGATGAAAAAGTGATCGATCCCTC
*** * * *
6723479 AAATG-AGGGGATCGATCTGGT-AGCTTGAAACCTCAACCAATCGATCCCTACAGGGAGGGGATC
66 AAATGAAAAAG-TCGATCTAGTCAGCTTGAAACCCCAACCAATCAATCCCTACAGGGAGGGGATC
* *
6723542 GATTGGTTTTTGCCAAAACTTGAGAAATTTCGATTCTGGAAGAAAATAG
130 GATTGGTTTTTGCCAAAACTTGAGAAATTTCGATTCTGGAAGAAAACAA
6723591 GATCGATCCCTTTT
1 GATCGATCCCTTTT
6723605 GCTATGGGAT
Statistics
Matches: 173, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
176 100 0.58
177 34 0.20
179 39 0.23
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (178 bp):
GATCGATCCCTTTTCTGAAAAATTGCACGATGAAAACTTTCTGATGAAAAAGTGATCGATCCCTC
AAATGAAAAAGTCGATCTAGTCAGCTTGAAACCCCAACCAATCAATCCCTACAGGGAGGGGATCG
ATTGGTTTTTGCCAAAACTTGAGAAATTTCGATTCTGGAAGAAAACAA
Found at i:6732689 original size:18 final size:18
Alignment explanation
Indices: 6732666--6732700 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6732656 ATTATTCATA
*
6732666 ATTAATTGAATTATATAT
1 ATTAATTCAATTATATAT
*
6732684 ATTAATTCAATTCTATA
1 ATTAATTCAATTATATA
6732701 CAGATTAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.49
Consensus pattern (18 bp):
ATTAATTCAATTATATAT
Found at i:6733036 original size:19 final size:20
Alignment explanation
Indices: 6733007--6733050 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
6732997 TAATTTATAT
*
6733007 TAATTATAATAGATA-ATACA
1 TAATTATAATAAATAGATA-A
6733027 TAATTA-AATAAATAGATAA
1 TAATTATAATAAATAGATAA
6733046 TAATT
1 TAATT
6733051 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
TAATTATAATAAATAGATAA
Found at i:6733055 original size:23 final size:24
Alignment explanation
Indices: 6732994--6733055 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 24
6732984 ATCAAATTAT
*
6732994 TAATAATTTATATTAATTATAATAGA
1 TAATAA-TT-TATTAAATATAATAGA
*
6733020 TAATACA-TAATTAAATA-AATAGA
1 TAATA-ATTTATTAAATATAATAGA
6733043 TAATAATTTATTA
1 TAATAATTTATTA
6733056 TTATTTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 1 0.03
23 16 0.52
24 7 0.23
25 1 0.03
26 5 0.16
27 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (24 bp):
TAATAATTTATTAAATATAATAGA
Found at i:6733086 original size:21 final size:20
Alignment explanation
Indices: 6733042--6733083 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
6733032 AAATAAATAG
6733042 ATAATAATTTATTATTATTTT
1 ATAATAATTTATTATTA-TTT
6733063 ATAATAATATTATTAATTATT
1 ATAATAAT-TTATT-ATTATT
6733084 ATATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATAATTTATTATTATTT
Found at i:6733666 original size:143 final size:143
Alignment explanation
Indices: 6733477--6733747 Score: 323
Period size: 143 Copynumber: 1.9 Consensus size: 143
6733467 AAAATAATAT
* * * *
6733477 TAATTTATTAATATTTCAAAAATTAATATGTAAGAGATTTAAAAAATAAATTTGTTTGTCAT-AC
1 TAATGTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT-TTTGGCATGAC
** * * * *
6733541 CAGT-TCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATCGTTATGACCTTTTATTTT
65 CAGTGT-AAACAATTATAACTATTTAAACAAATATATATTTCAAATCGTTATGACCTTTTATTTT
6733605 ATCATAAAGTAATGC
129 ATCATAAAGTAATGC
** * * *
6733620 TAATGTATTAATATTTTGAAAATTAATAAGTAATG-GATTTAGAAAATATATCTTTTGGCTTGAC
1 TAATGTATTAATATTTCAAAAATTAATAAGTAA-GAGATTTAAAAAATAAATCTTTTGGCATGAC
* * * *
6733684 CAGTGTAAACAATTATGACTATTTAAATAATTATATATTTCAAATCGTTATGACCTTTTGTTTT
65 CAGTGTAAACAATTATAACTATTTAAACAAATATATATTTCAAATCGTTATGACCTTTTATTTT
6733748 CTCACAAATC
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
142 6 0.06
143 98 0.92
144 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (143 bp):
TAATGTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTTTTGGCATGACC
AGTGTAAACAATTATAACTATTTAAACAAATATATATTTCAAATCGTTATGACCTTTTATTTTAT
CATAAAGTAATGC
Found at i:6736453 original size:11 final size:11
Alignment explanation
Indices: 6736437--6736563 Score: 55
Period size: 11 Copynumber: 11.5 Consensus size: 11
6736427 TTGTAATTAG
6736437 TATTATTATAT
1 TATTATTATAT
* *
6736448 TATTATTAAAC
1 TATTATTATAT
*
6736459 TACTAATTACTAT
1 TA-TTATTA-TAT
* *
6736472 TGTCATTAT-T
1 TATTATTATAT
6736482 TAATTTATTATAT
1 T-A-TTATTATAT
* *
6736495 TAATATTTATAA
1 TATTA-TTATAT
*
6736507 TATTACTA-AT
1 TATTATTATAT
*
6736517 AATTA--ATAT
1 TATTATTATAT
*
6736526 TATTATAATAT
1 TATTATTATAT
* *
6736537 AATTATTATAA
1 TATTATTATAT
* *
6736548 TATTTTTATAA
1 TATTATTATAT
6736559 TATTA
1 TATTA
6736564 GTAATTTTGT
Statistics
Matches: 85, Mismatches: 22, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
8 1 0.01
9 6 0.07
10 7 0.08
11 41 0.48
12 26 0.31
13 4 0.05
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.54
Consensus pattern (11 bp):
TATTATTATAT
Found at i:6736905 original size:19 final size:17
Alignment explanation
Indices: 6736881--6736917 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
6736871 TGTTTGAAAT
6736881 ATTAATAATTAATATTTTA
1 ATTAATAATT--TATTTTA
6736900 ATTAATAATTTATTTTA
1 ATTAATAATTTATTTTA
6736917 A
1 A
6736918 ATAAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTAATAATTTATTTTA
Found at i:6736938 original size:22 final size:20
Alignment explanation
Indices: 6736884--6736939 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
6736874 TTGAAATATT
* *
6736884 AATAA-TTAATATTTTAATT
1 AATAATTTAATATTTAAATA
6736903 AATAATTT-AT-TTTAAATAA
1 AATAATTTAATATTTAAAT-A
6736922 AATAATGTTAATATTTAA
1 AATAAT-TTAATATTTAA
6736940 CTATTAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 6 0.20
19 13 0.43
20 4 0.13
21 2 0.07
22 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
AATAATTTAATATTTAAATA
Found at i:6737348 original size:17 final size:17
Alignment explanation
Indices: 6737300--6737364 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 17
6737290 TATTATATTT
6737300 TTTTATTAAAGATTATAA
1 TTTTATTAAA-ATTATAA
*
6737318 TTTTATAAAAATTA-AA
1 TTTTATTAAAATTATAA
6737334 TATTTATTAATATTATTATAA
1 T-TTTATTAA-A--ATTATAA
*
6737355 ATTTATTAAA
1 TTTTATTAAA
6737365 TTTGAATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 3 0.08
17 11 0.28
18 10 0.26
19 1 0.03
20 12 0.31
21 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTTATTAAAATTATAA
Found at i:6737792 original size:24 final size:24
Alignment explanation
Indices: 6737765--6737810 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6737755 ATTTAATTAT
*
6737765 ATATAATATTAACTA-TTATTAAGG
1 ATATAAT-TTAAATATTTATTAAGG
*
6737789 ATATTATTTAAATATTTATTAA
1 ATATAATTTAAATATTTATTAA
6737811 TATTAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (24 bp):
ATATAATTTAAATATTTATTAAGG
Found at i:6737818 original size:17 final size:17
Alignment explanation
Indices: 6737796--6737829 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6737786 AGGATATTAT
6737796 TTAAATATTTATTAATA
1 TTAAATATTTATTAATA
6737813 TTAAATATTTATTAATA
1 TTAAATATTTATTAATA
6737830 GACATAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAATATTTATTAATA
Found at i:6737971 original size:20 final size:20
Alignment explanation
Indices: 6737946--6737983 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6737936 GGTTATGTAT
* *
6737946 ATATACTTAAAACTTTATTA
1 ATATACTAAAAAATTTATTA
6737966 ATATACTAAAAAATTTAT
1 ATATACTAAAAAATTTAT
6737984 ATATTATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATACTAAAAAATTTATTA
Found at i:6738081 original size:13 final size:12
Alignment explanation
Indices: 6738045--6738102 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
6738035 TTAATTAATT
6738045 TAATA-ATTAT-
1 TAATATATTATA
6738055 TAATATATTCATA
1 TAATATATT-ATA
6738068 TAATTATATTATA
1 TAA-TATATTATA
*
6738081 TAA-AT-TTAAA
1 TAATATATTATA
*
6738091 TAGTATATTATA
1 TAATATATTATA
6738103 ATTATTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 9 0.23
14 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATATATTATA
Found at i:6738136 original size:19 final size:17
Alignment explanation
Indices: 6738102--6738172 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 17
6738092 AGTATATTAT
6738102 AATTATTATATTAAATA
1 AATTATTATATTAAATA
6738119 AATTATTAGTAGTTAAATTA
1 AATTATTA-TA-TTAAA-TA
* *
6738139 ATTGTATTAATTATAAAATA
1 AAT-TATT-A-TATTAAATA
6738159 AATTATTAATATTA
1 AATTATT-ATATTA
6738173 TTTCAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
17 8 0.18
18 6 0.14
19 11 0.25
20 8 0.18
21 8 0.18
22 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.46
Consensus pattern (17 bp):
AATTATTATATTAAATA
Found at i:6738235 original size:15 final size:15
Alignment explanation
Indices: 6738215--6738257 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6738205 ATTTTTGCTA
6738215 TAATTAATAATATAT
1 TAATTAATAATATAT
6738230 TAATT-ATAAATATAT
1 TAATTAAT-AATATAT
*
6738245 T-ATAAATAATATA
1 TAATTAATAATATA
6738258 ATTATCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTAATAATATAT
Found at i:6738382 original size:19 final size:18
Alignment explanation
Indices: 6738345--6738383 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
6738335 TAATTTAGTG
* *
6738345 TAATAATAAATAGTATAT
1 TAATAAGAAATACTATAT
6738363 TAATAAGAAGATACTATAT
1 TAATAAGAA-ATACTATAT
6738382 TA
1 TA
6738384 TAGTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (18 bp):
TAATAAGAAATACTATAT
Found at i:6738428 original size:23 final size:23
Alignment explanation
Indices: 6738373--6738446 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
6738363 TAATAAGAAG
*
6738373 ATACT-ATATTATAGTATTTTATC
1 ATACTAATATTATA-TATTTAATC
*
6738396 -TA-TTAT-TTATATATTTAATC
1 ATACTAATATTATATATTTAATC
6738416 ATACTAATATTATATACTTTAAT-
1 ATACTAATATTATATA-TTTAATC
*
6738439 ATATTAAT
1 ATACTAAT
6738447 CATATAATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
20 8 0.19
21 8 0.19
22 7 0.16
23 14 0.33
24 6 0.14
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (23 bp):
ATACTAATATTATATATTTAATC
Found at i:6739508 original size:52 final size:52
Alignment explanation
Indices: 6739383--6739519 Score: 170
Period size: 52 Copynumber: 2.6 Consensus size: 52
6739373 AATAAAAAGA
* *
6739383 ATTTCTAAATAGGCCCAAATGGTGGAAATTTTAAAATTTTCAAGAAAGAAAAT
1 ATTTCTAAATTGGCCCAAATGGTGGAAAATTTAAAA-TTTCAAGAAAGAAAAT
*
6739436 ATTTCTAAATTGACCCAAATGGTGGAAAATTTAGAAA-TTCAA-AAGAGAAAAT
1 ATTTCTAAATTGGCCCAAATGGTGGAAAATTTA-AAATTTCAAGAA-AGAAAAT
* * *
6739488 ATTTTTAATTTGGCCTAAATGGTGGAATAATT
1 ATTTCTAAATTGGCCCAAATGGTGGAA-AATT
6739520 AGATATATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
51 2 0.03
52 35 0.47
53 34 0.46
54 3 0.04
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (52 bp):
ATTTCTAAATTGGCCCAAATGGTGGAAAATTTAAAATTTCAAGAAAGAAAAT
Found at i:6740069 original size:46 final size:46
Alignment explanation
Indices: 6740011--6740481 Score: 590
Period size: 46 Copynumber: 10.4 Consensus size: 46
6740001 ATAAACCTTC
*
6740011 AAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
* *
6740057 AAATAAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGATTCTT
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
* *
6740103 AAATGAAAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCAT
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
*
6740149 AAATGAGAATATTTAAGAAATCCTT-AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTAAGAAAT-CTTCAAATGAGAATCTTTGAGTCTT
*
6740195 AAATGAGAATCTTTAAGAAATAC-TCAAATGAGAATCTTTGAGTCAT
1 AAATGAGAATCTTTAAGAAAT-CTTCAAATGAGAATCTTTGAGTCTT
* * * *
6740241 AATTAAGAATTTTTAAGAAATCTTCAAATGAGAATCTTTGAGTTTT
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
* * *
6740287 AAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTGATTTCTC
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGA-GTCTT
* *
6740334 AAATGAGAATCTTT--G-AATCTTCAAATAAGAATCTTTGAGTTTT
1 AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
* * *
6740377 CAAATGAAAATCTTT--G-AGT-TTCAAATGAGAATCTTTGAGTTTT
1 -AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
* * *
6740420 CAAATAAGAATCTTT--G-AGTCTTCAAATGAAAATCTTTGAGT-TT
1 -AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
*
6740463 CAAATGAGAATTTTTAAGA
1 -AAATGAGAATCTTTAAGA
6740482 TGTGAAACCA
Statistics
Matches: 378, Mismatches: 38, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
43 57 0.15
44 57 0.15
45 4 0.01
46 241 0.64
47 19 0.05
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (46 bp):
AAATGAGAATCTTTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT
Found at i:6740632 original size:47 final size:49
Alignment explanation
Indices: 6740518--6740653 Score: 150
Period size: 44 Copynumber: 3.0 Consensus size: 49
6740508 TGAATCTTCA
*
6740518 AACTCGAATGAGAAGCTTTGAAC-TTTTGGATGTGAATCTCCAAAATTTG
1 AACT-GAATGAAAAGCTTTGAACTTTTTGGATGTGAATCTCCAAAATTTG
* *
6740567 AAC-G-A--AAAAGC-TTAAACTTTTTGGATGTGAA-C-CTAAAATTT-
1 AACTGAATGAAAAGCTTTGAACTTTTTGGATGTGAATCTCCAAAATTTG
6740608 AACTTGAATGAAAAGCTTTGAACTTTTT-GATGTG-ATCTCCAAAATT
1 AAC-TGAATGAAAAGCTTTGAACTTTTTGGATGTGAATCTCCAAAATT
6740654 CAGATGAGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 20
0.74 0.05 0.20
Matches are distributed among these distances:
41 3 0.04
42 8 0.11
43 7 0.10
44 19 0.26
45 1 0.01
46 14 0.19
47 18 0.25
49 3 0.04
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (49 bp):
AACTGAATGAAAAGCTTTGAACTTTTTGGATGTGAATCTCCAAAATTTG
Found at i:6742099 original size:17 final size:16
Alignment explanation
Indices: 6742073--6742104 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
6742063 AAAAAGAGAA
6742073 AAATAATAAATAAAAT
1 AAATAATAAATAAAAT
6742089 AAATAAATAAATAAAA
1 AAAT-AATAAATAAAA
6742105 AGAAGAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAATAATAAATAAAAT
Found at i:6742100 original size:12 final size:13
Alignment explanation
Indices: 6742072--6742103 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6742062 GAAAAAGAGA
6742072 AAAAT-AATAAAT
1 AAAATAAATAAAT
6742084 AAAATAAATAAAT
1 AAAATAAATAAAT
6742097 -AAATAAA
1 AAAATAAA
6742104 AAGAAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:6742242 original size:120 final size:118
Alignment explanation
Indices: 6742093--6742314 Score: 349
Period size: 120 Copynumber: 1.9 Consensus size: 118
6742083 TAAAATAAAT
* *
6742093 AAATAAATAAAAAGAAGAATTTTTGAATAGGCCCAAATGGTAGAAAATTTAGAAATTCCAAAAAG
1 AAATAAATAAAAAGAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATT-C-AAAAG
6742158 AGAAAATATTTCTAAATTGACCCAAATGGTGGAA-AATTTAGAAATCCAACAAAG
64 AGAAAATATTTCTAAATTGACCCAAATGGTGGAATAATTTAGAAATCCAACAAAG
*
6742212 AAATAAAATAAAATA-AAGAATTTCTAAATAGGCCCAAATGGTGGAAAATTTAGAAATTCAAAAG
1 AAAT-AAATAAAA-AGAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATTCAAAAG
* *
6742276 AGAAAATATTTCTAATTTGGCCCAAATGGTGGAATAATT
64 AGAAAATATTTCTAAATTGACCCAAATGGTGGAATAATT
6742315 AGATATATTT
Statistics
Matches: 95, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
118 37 0.39
119 9 0.09
120 48 0.51
121 1 0.01
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.25
Consensus pattern (118 bp):
AAATAAATAAAAAGAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATTCAAAAGAG
AAAATATTTCTAAATTGACCCAAATGGTGGAATAATTTAGAAATCCAACAAAG
Found at i:6743927 original size:19 final size:18
Alignment explanation
Indices: 6743903--6743941 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
6743893 TGTTTGAAAT
6743903 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
6743922 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
6743940 AT
1 AT
6743942 AAAATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:6743947 original size:19 final size:19
Alignment explanation
Indices: 6743906--6743959 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
6743896 TTGAAATATT
*
6743906 AATAATTAATATTTTAATT
1 AATAATTAATATTTTAATA
*
6743925 AATAATTTAT-TTTTAATAA
1 AATAATTAATATTTTAAT-A
6743944 AATAATGTTAATATTT
1 AATAA--TTAATATTT
6743960 GACTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 7 0.25
19 14 0.50
21 4 0.14
22 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
AATAATTAATATTTTAATA
Found at i:6745059 original size:13 final size:12
Alignment explanation
Indices: 6745023--6745080 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
6745013 TTAATTAATT
6745023 TAATA-ATTAT-
1 TAATATATTATA
6745033 TAATATATTCATA
1 TAATATATT-ATA
6745046 TAATTATATTATA
1 TAA-TATATTATA
*
6745059 TAA-AT-TTAAA
1 TAATATATTATA
*
6745069 TAGTATATTATA
1 TAATATATTATA
6745081 ATTATTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 9 0.23
14 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATATATTATA
Found at i:6745213 original size:15 final size:15
Alignment explanation
Indices: 6745193--6745235 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6745183 ATTTTTACTA
6745193 TAATTAATAATATAT
1 TAATTAATAATATAT
6745208 TAATT-ATAAATATAT
1 TAATTAAT-AATATAT
*
6745223 T-ATAAATAATATA
1 TAATTAATAATATA
6745236 ATTATCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTAATAATATAT
Found at i:6745356 original size:19 final size:18
Alignment explanation
Indices: 6745323--6745361 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
6745313 TAATTTAGTG
*
6745323 TAATAATAAATACTATAT
1 TAATAAGAAATACTATAT
6745341 TAATAAGAAGATACTATAT
1 TAATAAGAA-ATACTATAT
6745360 TA
1 TA
6745362 TAGTATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TAATAAGAAATACTATAT
Found at i:6745626 original size:18 final size:19
Alignment explanation
Indices: 6745598--6745639 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
6745588 TTATTACATG
* *
6745598 TATTATAAATTATTGTTAT
1 TATTATAAATTAATATTAT
6745617 TATT-TAAATTAATATTAT
1 TATTATAAATTAATATTAT
6745635 TATTA
1 TATTA
6745640 ATTATAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTATAAATTAATATTAT
Found at i:6746590 original size:119 final size:118
Alignment explanation
Indices: 6746347--6746561 Score: 317
Period size: 119 Copynumber: 1.8 Consensus size: 118
6746337 AAAAAAAAAG
*
6746347 AAATAAAAAGAATTTCTAATAGGCCCAAATGGAGGAAAATTTAGAAATTTCAAAAAAGAAAATAT
1 AAATAAAAAGAATTTCAAATAGGCCCAAATGGAGGAAAATTTAGAAATTTCAAAAAAGAAAATAT
*
6746412 TTCTAAACTGACCCAATGGTGGAAAATTTAGAAATCCAAATAAAATAAATAAT
66 TTCTAAACTGACCCAATGGTGGAAAATTGAGAAATCCAAATAAAATAAATAAT
* * *
6746465 AAATAAAGAGAATTTCCAAATAGGCCCAAATGGTGGAAAATTTAGAAA-TTCAAAAGAGAAAATA
1 AAATAAAAAGAATTT-CAAATAGGCCCAAATGGAGGAAAATTTAGAAATTTCAAAAAAGAAAATA
* *
6746529 TTTCT-AATTTAGCCCAAATGGTGGAATAATTGA
65 TTTCTAAACTGA-CCC-AATGGTGGAA-AATTGA
6746562 TATATTTTTA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
117 4 0.05
118 37 0.43
119 40 0.47
120 5 0.06
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (118 bp):
AAATAAAAAGAATTTCAAATAGGCCCAAATGGAGGAAAATTTAGAAATTTCAAAAAAGAAAATAT
TTCTAAACTGACCCAATGGTGGAAAATTGAGAAATCCAAATAAAATAAATAAT
Found at i:6747087 original size:46 final size:46
Alignment explanation
Indices: 6747032--6747174 Score: 218
Period size: 46 Copynumber: 3.1 Consensus size: 46
6747022 TCAAATATAA
*
6747032 TTAATAAATCTTCAAATGA-AATTCTTTGAGTCATAAATAAGAATCT
1 TTAAGAAATCTTCAAATGAGAA-TCTTTGAGTCATAAATAAGAATCT
6747078 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCATAAATGAA-AATCT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCATAAAT-AAGAATCT
* * *
6747124 TTAAGAAATCTTCAAATGAGAATCCTTGAGTCTTAAATGAGAATCT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCATAAATAAGAATCT
6747170 TTAAG
1 TTAAG
6747175 TCTTAAATAC
Statistics
Matches: 90, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
45 1 0.01
46 85 0.94
47 4 0.04
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (46 bp):
TTAAGAAATCTTCAAATGAGAATCTTTGAGTCATAAATAAGAATCT
Found at i:6747208 original size:46 final size:45
Alignment explanation
Indices: 6747158--6747375 Score: 226
Period size: 46 Copynumber: 4.8 Consensus size: 45
6747148 CTTGAGTCTT
* *
6747158 AAATGAGAATCTTTAAGTCTTAAATACGAATTTTTAAAAAATCCTC
1 AAATGAGAATCTTTAAGTCTTAAATA-GAATCTTTAAGAAATCCTC
* * *
6747204 AAATGAGAATCTTTGATTCTTAAATAAGAACCTTTAAGAAATCCTC
1 AAATGAGAATCTTTAAGTCTTAAAT-AGAATCTTTAAGAAATCCTC
*
6747250 AAATGAGAATCTTTAAGTTTTAAATGAGAATCTTTAAGAAATCCTC
1 AAATGAGAATCTTTAAGTCTTAAAT-AGAATCTTTAAGAAATCCTC
* * * * * *
6747296 AAATGAGGATCTTTGAGTCCTCAAATGAGAATATTT--G-AATCTTG
1 AAATGAGAATCTTTAAGT-CTTAAAT-AGAATCTTTAAGAAATCCTC
* *
6747340 AAATGAGAATCTTTGAGTTTTCAAATTAGAATCTTT
1 AAATGAGAATCTTTAAGTCTT-AAA-TAGAATCTTT
6747376 TAGTTTCAAA
Statistics
Matches: 147, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
43 1 0.01
44 33 0.22
45 2 0.01
46 96 0.65
47 15 0.10
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (45 bp):
AAATGAGAATCTTTAAGTCTTAAATAGAATCTTTAAGAAATCCTC
Found at i:6747208 original size:92 final size:89
Alignment explanation
Indices: 6747038--6747461 Score: 307
Period size: 92 Copynumber: 4.7 Consensus size: 89
6747028 ATAATTAATA
* * * *
6747038 AATCTTCAAATGA-AATTCTTTGAGTCATAAATAAGAATCTTTAAGAAATCTTCAAATGAGAATC
1 AATCTTCAAATGAGAA-TCCTTGAATCTTAAATGAGAATCTTTAAG---TCTT-AAATGAGAATC
* * * *
6747102 TTT---GAGTCAT-AAATGAAAATCTTTAAG
61 TTTAAAAAATCCTCAAATGAGAATCTTT--G
* *
6747129 AAATCTTCAAATGAGAATCCTTGAGTCTTAAATGAGAATCTTTAAGTCTTAAAT-ACGAATTTTT
1 -AATCTTCAAATGAGAATCCTTGAATCTTAAATGAGAATCTTTAAGTCTTAAATGA-GAATCTTT
6747193 AAAAAATCCTCAAATGAGAATCTTTG
64 AAAAAATCCTCAAATGAGAATCTTTG
* * * *
6747219 ATTCTT-AAATAAGAA-CCTTTAAGAAATCCTCAAATGAGAATCTTTAAGTTTTAAATGAGAATC
1 AATCTTCAAATGAGAATCC-TT--G-AAT-CTTAAATGAGAATCTTTAAGTCTTAAATGAGAATC
* *
6747282 TTTAAGAAATCCTCAAATGAGGATCTTTG
61 TTTAAAAAATCCTCAAATGAGAATCTTTG
* * ** * * *
6747311 AGTCCTCAAATGAGAATATTTGAATCTTGAAATGAGAATCTTTGAGTTTTCAAATTAGAATCTTT
1 AATCTTCAAATGAGAATCCTTGAATCTT-AAATGAGAATCTTTAAGTCTT-AAATGAGAATCTTT
* * * *
6747376 ---TAGT-TTCAAATAAGAATCTTTG
64 AAAAAATCCTCAAATGAGAATCTTTG
* * * * *
6747398 AGTTTTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTTTGAGT-TTCAAATGAGAATCTTT
1 AATCTTCAAATGAGAATCCTTGAATC-TTAAATGAGAATCTTTAAGTCTT-AAATGAGAATCTTT
6747462 GAGTTTCAAA
Statistics
Matches: 281, Mismatches: 34, Indels: 40
0.79 0.10 0.11
Matches are distributed among these distances:
86 16 0.06
87 58 0.21
88 25 0.09
89 11 0.04
90 25 0.09
91 20 0.07
92 113 0.40
93 13 0.05
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (89 bp):
AATCTTCAAATGAGAATCCTTGAATCTTAAATGAGAATCTTTAAGTCTTAAATGAGAATCTTTAA
AAAATCCTCAAATGAGAATCTTTG
Found at i:6747219 original size:113 final size:113
Alignment explanation
Indices: 6747040--6747287 Score: 338
Period size: 113 Copynumber: 2.2 Consensus size: 113
6747030 AATTAATAAA
* * *
6747040 TCTTCAAATGA-AATTCTTTGAGTCATAAATAAGAATCTTTAAGAAATCTTCAAATGAGAATCTT
1 TCTT-AAATGAGAA-TCTTTAAGTCATAAATAAGAATCTTTAAAAAATCCTCAAATGAGAATCTT
* * *
6747104 TGAGTCATAAATGAA-AATCTTTAAGAAATCTTCAAATGAGAATCCTTGAG
64 TGAGTCATAAAT-AAGAACCTTTAAGAAATCCTCAAATGAGAATCCTTAAG
* * *
6747154 TCTTAAATGAGAATCTTTAAGTCTTAAATACGAATTTTTAAAAAATCCTCAAATGAGAATCTTTG
1 TCTTAAATGAGAATCTTTAAGTCATAAATAAGAATCTTTAAAAAATCCTCAAATGAGAATCTTTG
* * *
6747219 ATTCTTAAATAAGAACCTTTAAGAAATCCTCAAATGAGAATCTTTAAG
66 AGTCATAAATAAGAACCTTTAAGAAATCCTCAAATGAGAATCCTTAAG
*
6747267 TTTTAAATGAGAATCTTTAAG
1 TCTTAAATGAGAATCTTTAAG
6747288 AAATCCTCAA
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
112 2 0.02
113 111 0.93
114 6 0.05
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (113 bp):
TCTTAAATGAGAATCTTTAAGTCATAAATAAGAATCTTTAAAAAATCCTCAAATGAGAATCTTTG
AGTCATAAATAAGAACCTTTAAGAAATCCTCAAATGAGAATCCTTAAG
Found at i:6747298 original size:159 final size:160
Alignment explanation
Indices: 6747032--6747327 Score: 443
Period size: 159 Copynumber: 1.9 Consensus size: 160
6747022 TCAAATATAA
* * * *
6747032 TTAATAAATCTTCAAATGAAATTCTTTGAGTCATAAATAAGAATCTTTAAGAAATCTTCAAATGA
1 TTAAAAAATCCTCAAATGAAATTCTTTGAGTCATAAATAAGAACCTTTAAGAAATCCTCAAATGA
* * *
6747097 GAATCTTTGAGTCATAAATGAAAATCTTTAAGAAATCTTCAAATGAGAATCCTTGAGT-CTTAAA
66 GAATCTTTAAGTCATAAATGAAAATCTTTAAGAAATCCTCAAATGAGAATCCTTGAGTCCTCAAA
6747161 TGAGAATCTTTAAGTCTTAAATACGAATTT
131 TGAGAATCTTTAAGTCTTAAATACGAATTT
* *
6747191 TTAAAAAATCCTCAAATGAGAA-TCTTTGATTCTTAAATAAGAACCTTTAAGAAATCCTCAAATG
1 TTAAAAAATCCTCAAATGA-AATTCTTTGAGTCATAAATAAGAACCTTTAAGAAATCCTCAAATG
** * * *
6747255 AGAATCTTTAAGTTTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGGATCTTTGAGTCCTCAA
65 AGAATCTTTAAGTCATAAATGAAAATCTTTAAGAAATCCTCAAATGAGAATCCTTGAGTCCTCAA
6747320 ATGAGAAT
130 ATGAGAAT
6747328 ATTTGAATCT
Statistics
Matches: 121, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
159 107 0.88
160 14 0.12
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (160 bp):
TTAAAAAATCCTCAAATGAAATTCTTTGAGTCATAAATAAGAACCTTTAAGAAATCCTCAAATGA
GAATCTTTAAGTCATAAATGAAAATCTTTAAGAAATCCTCAAATGAGAATCCTTGAGTCCTCAAA
TGAGAATCTTTAAGTCTTAAATACGAATTT
Found at i:6747319 original size:22 final size:22
Alignment explanation
Indices: 6747040--6747485 Score: 365
Period size: 21 Copynumber: 20.0 Consensus size: 22
6747030 AATTAATAAA
6747040 TCTTCAAATGA-AATTCTTTGAG
1 TCTTCAAATGAGAA-TCTTTGAG
* * *
6747062 TCAT-AAATAAGAATCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
6747086 TCTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
6747108 TCAT-AAATGAAAATCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
*
6747132 TCTTCAAATGAGAATCCTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
6747154 TCTT-AAATGAGAATCTTTAAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
6747175 TCTT-AAAT-ACGAATTTTTAAAAAA
1 TCTTCAAATGA-GAATCTTT---GAG
* *
6747199 TCCTCAAATGAGAATCTTTGAT
1 TCTTCAAATGAGAATCTTTGAG
* * *
6747221 TCTT-AAATAAGAACCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
* *
6747245 TCCTCAAATGAGAATCTTTAAG
1 TCTTCAAATGAGAATCTTTGAG
* *
6747267 T-TTTAAATGAGAATCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
* *
6747291 TCCTCAAATGAGGATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
6747313 TCCTCAAATGAGAATATTTGAA
1 TCTTCAAATGAGAATCTTTGAG
*
6747335 TCTTGAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
6747357 TTTTCAAATTAGAATCTTTTAG
1 TCTTCAAATGAGAATCTTTGAG
*
6747379 T-TTCAAATAAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
6747400 TTTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
6747422 TCTTTAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
6747444 T-TTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
6747465 T-TTCAAATGAGAATTTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
6747486 ATGTGAAACC
Statistics
Matches: 344, Mismatches: 56, Indels: 49
0.77 0.12 0.11
Matches are distributed among these distances:
20 1 0.00
21 138 0.40
22 117 0.34
23 6 0.02
24 19 0.06
25 62 0.18
26 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (22 bp):
TCTTCAAATGAGAATCTTTGAG
Found at i:6747398 original size:65 final size:64
Alignment explanation
Indices: 6747042--6747485 Score: 301
Period size: 67 Copynumber: 6.6 Consensus size: 64
6747032 TTAATAAATC
* * * *
6747042 TTCAAATGA-AATTCTTTGAGTCAT-AAATAAGAATCTTTAAGAAATCTTCAAATGAGAATCTTT
1 TTCAAATGAGAA-TCTTTGAGT-TTCAAATGAGAATCTTT--G-AGTCTTTAAATGAGAATCTTT
6747105 GAGT
61 GAGT
* * * *
6747109 CAT-AAATGAAAATCTTTAAGAAATCTTCAAATGAGAATCCTTGAGTC-TTAAATGAGAATCTTT
1 -TTCAAATGAGAATCTTT--G-AGT-TTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTTT
*
6747172 AAGT
61 GAGT
* * * * * * *
6747176 CTT-AAAT-ACGAATTTTTAAAAAATCCTCAAATGAGAATCTTTGATTC-TTAAATAAGAACCTT
1 -TTCAAATGA-GAATCTTT---GAGT-TTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTT
*
6747238 TAAGAAAT
60 T--G-AGT
* * * * * * *
6747246 CCTCAAATGAGAATCTTTAAGTTTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGGATCTTTG
1 -TTCAAATGAGAATCTTTGAGTTTCAAATGAGAATCTTT--G-AGTCTTTAAATGAGAATCTTTG
6747311 AGT
62 AGT
* * * * * *
6747314 CCTCAAATGAGAATATTTGAATCTTGAAATGAGAATCTTTGAGT-TTTCAAATTAGAATCTTTTA
1 -TTCAAATGAGAATCTTTGAGT-TTCAAATGAGAATCTTTGAGTCTTT-AAATGAGAATCTTTGA
6747378 GT
63 GT
*
6747380 TTCAAATAAGAATCTTTGAGTTTTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTTTGAGT
1 TTCAAATGAGAATCTTTGAG-TTTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTTTGAGT
*
6747445 TTCAAATGAGAATCTTTGAGTTTCAAATGAGAATTTTTGAG
1 TTCAAATGAGAATCTTTGAGTTTCAAATGAGAATCTTTGAG
6747486 ATGTGAAACC
Statistics
Matches: 307, Mismatches: 49, Indels: 44
0.77 0.12 0.11
Matches are distributed among these distances:
64 20 0.07
65 72 0.23
66 22 0.07
67 94 0.31
68 32 0.10
69 20 0.07
70 11 0.04
71 35 0.11
72 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (64 bp):
TTCAAATGAGAATCTTTGAGTTTCAAATGAGAATCTTTGAGTCTTTAAATGAGAATCTTTGAGT
Found at i:6747848 original size:41 final size:43
Alignment explanation
Indices: 6747791--6747880 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
6747781 ATGATTATCA
* *
6747791 AGGAGCCTTTTA-TTTT-TCAAAGTTGTTGTG-CCTCTATTTAG
1 AGGAGCCATTTATTTTTCTCAAAGTTGTTGAGCCCT-TATTTAG
*
6747832 AGGAGCCATTTATTTTTCTCAAAGTTGTTGAGCCCTTGTTTAG
1 AGGAGCCATTTATTTTTCTCAAAGTTGTTGAGCCCTTATTTAG
6747875 AGGAGC
1 AGGAGC
6747881 TTTGTTTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
41 11 0.26
42 4 0.09
43 25 0.58
44 3 0.07
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (43 bp):
AGGAGCCATTTATTTTTCTCAAAGTTGTTGAGCCCTTATTTAG
Found at i:6748852 original size:16 final size:16
Alignment explanation
Indices: 6748817--6748865 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
6748807 CGTGCCATTT
*
6748817 TTTTTGTATTTTTTCATA
1 TTTTTATATTTTTT--TA
6748835 TTTTTATATTTTTTTA
1 TTTTTATATTTTTTTA
* *
6748851 TTTATATGTTTTTTT
1 TTTTTATATTTTTTT
6748866 CTTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.54
18 13 0.46
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTTTATATTTTTTTA
Found at i:6749105 original size:7 final size:7
Alignment explanation
Indices: 6749096--6749125 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
6749086 AAAAGAGAAT
*
6749096 AAATAAT
1 AAATAAA
6749103 AAATAAA
1 AAATAAA
6749110 AAATAAA
1 AAATAAA
6749117 AAATAAA
1 AAATAAA
6749124 AA
1 AA
6749126 GAAGAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:6749236 original size:122 final size:119
Alignment explanation
Indices: 6749110--6749327 Score: 332
Period size: 122 Copynumber: 1.8 Consensus size: 119
6749100 AATAAATAAA
* * *
6749110 AAATAAAA-AATAA-AAAGAAGAATTTCTGAATAGGCCTAAATGGTGGAAAATTTAGAAATTTCA
1 AAATAAAATAA-AAGAAA-AAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAA--TC-
6749173 AAAAGAGAAAATATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATCCAACAAAG
61 AAAAGAGAAAATATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATCCAACAAAG
6749232 AAATAAAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATCAAAAG
1 AAATAAAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATCAAAAG
* *
6749297 AGAAAATATTTCTAATTTGGCCCAAATGGTG
66 AGAAAATATTTCTAAATTGACCCAAATGGTG
6749328 GAATAATTAG
Statistics
Matches: 89, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
119 34 0.38
120 2 0.02
122 48 0.54
123 5 0.06
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (119 bp):
AAATAAAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAAAATTTAGAAATCAAAAG
AGAAAATATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATCCAACAAAG
Found at i:6749308 original size:51 final size:51
Alignment explanation
Indices: 6749237--6749335 Score: 130
Period size: 51 Copynumber: 1.9 Consensus size: 51
6749227 CAAAGAAATA
6749237 AAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAA-AATTTAG
1 AAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAATAATTTAG
* * * *
6749287 AAATCAAAAGAGAAAA-TATTTCTAATTTGGCCCAAATGGTGGAATAATT
1 AAAT-AAAAGA-AAAAGAATTTCTAAATAGGCCCAAATGGTAGAATAATT
6749336 AGATATATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 4 0.10
51 30 0.71
52 8 0.19
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.25
Consensus pattern (51 bp):
AAATAAAAGAAAAAGAATTTCTAAATAGGCCCAAATGGTAGAATAATTTAG
Found at i:6750177 original size:25 final size:25
Alignment explanation
Indices: 6750122--6750183 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 25
6750112 TAATTATAAT
* **
6750122 AATTAAATATTATTATTATTATTCA
1 AATTAAATAATATTAAAATTATTCA
** *
6750147 TTTTAAATAATATTAAAATTATTTA
1 AATTAAATAATATTAAAATTATTCA
*
6750172 AATTAATTAATA
1 AATTAAATAATA
6750184 CTCAACTAAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
AATTAAATAATATTAAAATTATTCA
Found at i:6750275 original size:36 final size:34
Alignment explanation
Indices: 6750208--6750275 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 34
6750198 GAACAATAAA
* *
6750208 TTATAAATTATTACTAATATGATTATTAATATAG
1 TTATAAATTATTAATAATATGATTATAAATATAG
6750242 TTATAAATTATATATATAATATTG-TTATAAATAT
1 TTATAAATTAT-TA-ATAATA-TGATTATAAATAT
6750276 TATAAGCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 11 0.38
35 2 0.07
36 14 0.48
37 2 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (34 bp):
TTATAAATTATTAATAATATGATTATAAATATAG
Found at i:6750481 original size:16 final size:14
Alignment explanation
Indices: 6750470--6750511 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
6750460 TAATAATATA
6750470 AATATATTATAATT
1 AATATATTATAATT
6750484 AATGA-ATATATAATTT
1 AAT-ATAT-TATAA-TT
6750500 AATATATTATAA
1 AATATATTATAA
6750512 GATTTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 5 0.21
15 12 0.50
16 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (14 bp):
AATATATTATAATT
Found at i:6750546 original size:21 final size:21
Alignment explanation
Indices: 6750522--6750561 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6750512 GATTTAATAA
*
6750522 ATATAGTT-AATTATTATAAAC
1 ATATA-TTAAATTATAATAAAC
6750543 ATATATTAAATTATAATAA
1 ATATATTAAATTATAATAA
6750562 TATTAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (21 bp):
ATATATTAAATTATAATAAAC
Found at i:6750613 original size:20 final size:19
Alignment explanation
Indices: 6750585--6750637 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 19
6750575 AGCTTAACTT
*
6750585 TTAATTTAATTATAATACAA
1 TTAAATTAATTATAATA-AA
6750605 TTAAATTAA-TAT--T-AA
1 TTAAATTAATTATAATAAA
6750620 TTAAATTAATTATTAATA
1 TTAAATTAATTA-TAATA
6750638 TTTAGTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
15 11 0.41
16 2 0.07
17 2 0.07
19 4 0.15
20 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAAATTAATTATAATAAA
Found at i:6750621 original size:15 final size:16
Alignment explanation
Indices: 6750603--6750636 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
6750593 ATTATAATAC
6750603 AATTAAATTAA-TATT
1 AATTAAATTAATTATT
6750618 AATTAAATTAATTATT
1 AATTAAATTAATTATT
6750634 AAT
1 AAT
6750637 ATTTAGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTAAATTAATTATT
Found at i:6750674 original size:15 final size:15
Alignment explanation
Indices: 6750654--6750684 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6750644 ATTCAATACA
*
6750654 TTTAATTTAATTAAT
1 TTTAATTAAATTAAT
6750669 TTTAATTAAATTAAT
1 TTTAATTAAATTAAT
6750684 T
1 T
6750685 CTATTTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTAATTAAATTAAT
Found at i:6750682 original size:19 final size:19
Alignment explanation
Indices: 6750655--6750725 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
6750645 TTCAATACAT
*
6750655 TTAATTTAATTAATTTTAA
1 TTAAATTAATTAATTTTAA
* *
6750674 TTAAATTAATTCTATTTGTTATC
1 TTAAATTAA-T-TAATT-TTA-A
* * *
6750697 TTTAATTAATAAATATTAA
1 TTAAATTAATTAATTTTAA
6750716 TTAAATTAAT
1 TTAAATTAAT
6750726 GTAACTATAA
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 6 0.15
22 4 0.10
23 8 0.21
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (19 bp):
TTAAATTAATTAATTTTAA
Found at i:6752035 original size:28 final size:28
Alignment explanation
Indices: 6752003--6752057 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
6751993 TTAATAAGTA
**
6752003 ATATTTAT-ATAATCTATTTAATGATTAT
1 ATATTTATAATAAAATATTTAAT-ATTAT
6752031 ATATTTATAATAAAATATTTAATATTA
1 ATATTTATAATAAAATATTTAATATTA
6752058 AATTATTGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (28 bp):
ATATTTATAATAAAATATTTAATATTAT
Found at i:6752449 original size:22 final size:22
Alignment explanation
Indices: 6752402--6752451 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
6752392 TATAGTTAAT
* * *
6752402 TAATAATTGATTAATTTTATTA
1 TAATATTTGATTAAATTAATTA
6752424 TAATATTTG-TTAAATTAATTA
1 TAATATTTGATTAAATTAATTA
6752445 GTAATAT
1 -TAATAT
6752452 AATTAATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (22 bp):
TAATATTTGATTAAATTAATTA
Found at i:6752580 original size:23 final size:20
Alignment explanation
Indices: 6752550--6752596 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
6752540 TAATATATTG
6752550 TTATTTATCTAAATATATTATAA
1 TTATTTAT-T-AATATA-TATAA
*
6752573 TTATTTATTTATATATATAA
1 TTATTTATTAATATATATAA
6752593 TTAT
1 TTAT
6752597 ATATAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 1 0.04
23 8 0.35
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTTATTAATATATATAA
Found at i:6752624 original size:13 final size:13
Alignment explanation
Indices: 6752606--6752632 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6752596 TATATAATTA
6752606 ATTAATTAATAAT
1 ATTAATTAATAAT
6752619 ATTAATTAATAAT
1 ATTAATTAATAAT
6752632 A
1 A
6752633 ATATATTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAATTAATAAT
Found at i:6752625 original size:31 final size:30
Alignment explanation
Indices: 6752563--6752688 Score: 80
Period size: 31 Copynumber: 4.1 Consensus size: 30
6752553 TTTATCTAAA
* *
6752563 TATATTATAATTATTTATTTATATATATAAT
1 TATA-TATAATTATTAATTAATATATATAAT
6752594 TATATATAATTAATTAATTAATA-ATATTAAT
1 TATATATAATT-ATTAATTAATATATA-TAAT
* * *
6752625 TA-ATAATAATATATTGA-TACTATATAAATAT
1 TATAT-ATAAT-TATTAATTAATATATATA-AT
* * *
6752656 TA-AAATAAATATTATTTAGATTATATATAAT
1 TATATATAATTATTAATTA-A-TATATATAAT
6752687 TA
1 TA
6752689 AGTAATATTA
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
29 4 0.05
30 23 0.31
31 40 0.53
32 8 0.11
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (30 bp):
TATATATAATTATTAATTAATATATATAAT
Found at i:6752782 original size:24 final size:25
Alignment explanation
Indices: 6752754--6752804 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
6752744 AAATAAACAA
*
6752754 TAATAAAATATATAATAA-TTATAT
1 TAATAAAATATATAATAAGTTAAAT
* *
6752778 TAATATAATTTATAATAAGTTAAAT
1 TAATAAAATATATAATAAGTTAAAT
6752803 TA
1 TA
6752805 TTAATTGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
TAATAAAATATATAATAAGTTAAAT
Found at i:6753005 original size:16 final size:18
Alignment explanation
Indices: 6752984--6753018 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
6752974 GTTAATTTAC
6752984 AATAATA-TTAT-ATTGT
1 AATAATATTTATAATTGT
6753000 AATAATATTTATAATTGT
1 AATAATATTTATAATTGT
6753018 A
1 A
6753019 TACAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (18 bp):
AATAATATTTATAATTGT
Found at i:6753438 original size:13 final size:13
Alignment explanation
Indices: 6753420--6753444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6753410 TAATAGATAA
6753420 TAATTATTAAATC
1 TAATTATTAAATC
6753433 TAATTATTAAAT
1 TAATTATTAAAT
6753445 TATACTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTATTAAATC
Found at i:6753483 original size:14 final size:16
Alignment explanation
Indices: 6753457--6753490 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
6753447 TACTTATTTT
6753457 TTAATATAATAATTG-
1 TTAATATAATAATTGA
6753472 TTAATA-AATAATTGA
1 TTAATATAATAATTGA
6753487 TTAA
1 TTAA
6753491 GTAATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TTAATATAATAATTGA
Found at i:6753625 original size:13 final size:13
Alignment explanation
Indices: 6753580--6753636 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
6753570 TTTATTATTT
6753580 ATAATTTATAATA
1 ATAATTTATAATA
*
6753593 A-ATATATATAATA
1 ATA-ATTTATAATA
*
6753606 A-ATATTTATATTA
1 ATA-ATTTATAATA
6753619 ATAATTTA-AATA
1 ATAATTTATAATA
6753631 ATAATT
1 ATAATT
6753637 AATATTATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
12 10 0.26
13 27 0.71
14 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAATTTATAATA
Found at i:6754143 original size:14 final size:15
Alignment explanation
Indices: 6754124--6754188 Score: 64
Period size: 14 Copynumber: 4.5 Consensus size: 15
6754114 AGAAATATTA
6754124 TAATATATTTAT-AT
1 TAATATATTTATAAT
6754138 TAATATA-TTATAAT
1 TAATATATTTATAAT
* *
6754152 TAATAAAATTATTAA-
1 TAATATATTTA-TAAT
* *
6754167 TATTAAATTTATAAT
1 TAATATATTTATAAT
6754182 TAATATA
1 TAATATA
6754189 AATTAACAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
13 4 0.10
14 18 0.43
15 17 0.40
16 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATATATTTATAAT
Done.