Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 6 of 120
Found at i:556613 original size:902 final size:899
Alignment explanation
Indices: 553800--562524 Score: 10963
Period size: 903 Copynumber: 9.8 Consensus size: 899
553790 CCGCCAGCTT
* *
553800 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * **
553865 GTCTAAGATC-GAACTAGACCAAGGGTTGCGGCAGCACATTTTGGGCTCGGGCATGTGCTGGTGC
66 GTCTAAGATCAGATC-AGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * *
553929 CACATTTTTGTTCG-CTGGGGCACCAT--T------A---CCGGAGAACATGACCGGCGGCATTG
130 CGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTG
* ** *
553982 GGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
194 GGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * * *
554047 CCCTTATATTAGCCCCGTATCGCTCGTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
554112 AGATTTTACAGGTTTGCTGCCTGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTATTCAAATG
324 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
** *
554177 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTGAAAAAAAATACA
389 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
554242 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCTGAAC
454 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAAACCCGAAC
* * * *
554307 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCTATGAAACTTCGCGTGA
518 CGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
554372 AGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
554437 AGATGTTCCTGAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
554502 GCGTAGTGCCTGCCCG-----CCTGCTCATTTCGTC-GATTGGCTTAGGCATACGGAGTTCATTC
712 GCGTAGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
554561 CCAGTCTAAGA-TCAGATCAAACCGAAGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGAC
776 CCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* * *
554625 CCGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTC
841 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
554684 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * * * * ***
554749 GTCTAAGATCAGATGGGACCGAGGGCTACGACAGCACATGCTAGGCTCGGGAATGTGCTAGTTTT
66 GTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
554814 GCATTTTTCTTCGTCGGGGCATCATCATCGGAGCATCGTCAGAGAACCTGACCAGTGGCATTGAG
131 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
554879 GTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
196 GTTCCGGCGATCGGGGGGCCA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
554944 CCTTATATTGGCCCCCTATCCCTCGTGAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* ** * *
555009 GATTTTACAGGTTTGCTGCTAGTAGCTTTTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* *
555074 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * * **
555139 GGATCACATCTACCAAGTTTAGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCTGGAACCG
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAACCG
* **
555204 CAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCTGTGAAACTTCACGTGAAG
520 CAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
555269 GCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATAG-ATTTGGCACACAAAAATATGAA
584 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGCAGAAATATGAA
* *
555333 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGA
648 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* **
555398 CGTAGTGCCCGCCCGTCCGCCCGCCCTCTCGTTTCGTC-GATTGGCTTAGGCATAAAGAGTTCAT
713 CGTAGTGCCCGCCCG-CC-CCC-CCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCAT
* * * * *
555462 TCCCAGTCTAAGA-TCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGTGGG
774 TCCCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * *
555526 ACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTC
839 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
555587 ATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
555652 GCCTAAGATCAGA-CGGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGAGAATGTGCTGGTGC
66 GTCTAAGATCAGATC-AGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
555716 TGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGG
130 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGG
*
555781 GGTTCCGGCGATCGGGGGGGCCATGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
195 GGTTCCGGCGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
555846 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
555911 AGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
324 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* *
555976 GTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
389 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
556041 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCC-AGAC
454 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGA-AC
**
556105 CGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
518 CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * **
556170 GGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACACAGAAATATGAA
583 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
556235 GATGTTCCTAAACCCACCTACCACCCTGTCGATCCATGGCTTCCGCATCCCGTCTCTCTGGCCGG
648 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
556300 CATAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATT
713 CGTAGTGCCCGCCCGCCC-CCC-C-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * ** * * * * * *
556365 CCTAGTCGAAGATTGA-ACCAGATTGAGGGTTGCGGCAATTGGATCAGCGGCACGTAAAGGGGGA
775 CCCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGA
* * * *
556429 CACGACCGATCCCTGGCTTGCGCATCCCGCCCCTC-GAGCCGGCTGAGCACCCGCACGCTC
840 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG-GCCGGCTGAGCGCCCGCACGCTC
*
556489 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
556554 GTCTAAGATC-GAATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
66 GTCTAAGATCAG-ATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** ** ** * * * *
556618 CGCATTTTTCTTCACCGGGGTGCCATCACCGGAGTATCGCCGTAGAAGCTAACC-GACGGCATTG
130 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAG-CGGCATTG
* * ** * *
556682 GGGTTCCGACGATCGGGGGGGCCAGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTCATTCCT
194 GGGTTCCGGCGATC-GGGGGGCCAGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
556747 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
556812 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTAAAATGGGGACACCTTTTTCAAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
*
556877 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAAT
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAAT
* * * * * *
556942 ACAAGGATCATGTCTACCAGGTTTGGGGCCAAGACTCCTTCCAAAAAAATTTTAAAAAATCTCGA
451 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGA
* * *
557007 ACTGTAAAAAGTTTCAAAAATCAG-AAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
516 ACCGCAAAAAGTTTCAAAAATC-GTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
557071 TGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATCAAAATGGCATTGGCATGCAGAAATA
579 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * * * *
557136 TGAAGATGTGCCTAAACGCAGCTAGCAACCTAT-GATCCACGGCTTGCGCATCTCGTTTCTCTGG
644 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
557200 TCAGCGTAGTGCCCTCCCG-CCCACCCGCTTGGTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
709 CCGGCGTAGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
557264 TCCAAGTCTAAGA-TCAGACCAGACTGAGGGTTACGACAGTAGGATCGGTAGCACGCAGAGGGGC
774 TCCCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * *
557328 ACCCGACCGTTCCTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGAGCCCACATGCTC
839 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
557389 GTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C-
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
557442 --C---G----GATC--A---AGGGTTGC-AGCAGCACTTGCTGGGCTCGGGCATGTGCTGGTGC
66 GTCTAAGATCAGATCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
557492 CGCATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAG-ACCTGA-CAGGCGGCATTG
130 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCA-GCGGCATTG
* * * * ** *
557544 GGGTTCTGGCGATCAGGGGGTCAGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTGGTTAG
194 GGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * ** *
557609 -TCTGTATAATATCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTT
259 CCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
557672 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACAATTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* *
557737 GGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
557802 AGGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAATATCCCGAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAAC
** *
557867 CATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
518 CGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
557932 AGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGTCATTGGTATACAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
557997 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * ** *
558062 ACGTAGTGCCCACCCGCCCACCCGCCCGATCGTTTCGTTGGTTGGCTTAGGCGTACGGAGTTCAT
712 GCGTAGTGCCCGCCCG-CC-CCC-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
558127 TTCCAGTCTAAGA-TCAGACCAAACCAAGGGTTGTGGCAGTAGGATTC-G-ATG-A-ACATAGAG
774 TCCCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGA-TCGGCA-GCACGCAGAGGG
* ** **
558187 GG----G---GA--CCCGGCTTACGCATCCCGCCCCTCTGGCCGAATGAGCGCCCATACGCTC
837 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
558241 GTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
558306 GTCTAAAATCAGACCGGACCGAGGGTTGCTG-C-GACACATGCAT-GGCTCGGGCATGTGCTGGT
66 GTCTAAGATCAGATCAGACCGAGGGTTGC-GACAG-CACATGC-TGGGCTCGGGCATGTGCTGGT
* * * * *
558368 GCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGA-CAGGCAGCAT
128 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCA-GCGGCAT
* * * * *
558432 TGGGGTTTCGACAATCGGGGGGTC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTG
192 TGGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
558496 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* **
558561 TGAGATTTTACAGGTTTACTGCCAGTAGTAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * *
558626 TGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
558691 CAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAA
* * * *
558756 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
517 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
558821 AGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG---TGGCATGCAAAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
558883 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCCCATCTCTCTGGCCG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
558948 ACGTAGTGCCCGCCCG-CCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCC
712 GCGTAGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
559012 CTGTCTAAGA-TC-GAACCAGACCGAGGGTGGCAGCAATAGGATTGGCAGCACGTAAAGGGGGAC
777 CAGTCTAAGATTCAG-ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* * * ** * * *
559075 CCGGTCAATCCGCAACTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTC
841 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
559134 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
559199 GTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
66 GTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
559264 GTATTTTTCTTCGTCGCGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGG
131 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
* *
559329 GTTCCGTCGATCAGGGGGGCC-GGGCAGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTG
196 GTTCCGGCGATC-GGGGGGCCAGGG--GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
559393 GCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
559458 GAGATTTTACAGGTTTGCTGTC-GTAGCTATTAAAGTGTCTAAAATGAGGACATTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* *
559522 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * * * *
559587 AAGAATCATGTATACCAAGTTTGGGGCCAAGACTCCATCCAAAAAAATTTTAAAAAATCCTGAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAAC
* *
559652 CGTAAAAAGTTTCGAAAAT-GATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
518 CGCAAAAAGTTTCAAAAATCG-TGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
559716 AAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATCAAAATGGCATTGGCATGTACAAATATG
581 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
** * *
559781 AAGATGTGCCTAAACGTAGCTACCACCCT-T-GATCCAGGGCTTGCGCATCCCGTCTCTCTGGCC
646 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** * * * *
559844 GATGTAGTGCCCGCCCG-CCCTCCCGCTCGGTTCATCAATTGGCTTAGGCATACGGAGTTCATTC
711 GGCGTAGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * ** ** * ** * *
559908 CAAGTCTAAGA-TCGGACTGGATAGAGGGTTACGGCAACAGGATCAGCAGCATGCAGAGGGGGAC
776 CCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* ** * * * *
559972 CTGGCCGATCCCCGGCTTGCGCATCCCGCCTCTCAGGCCGGTTGAGTGCCCGCACGCTC
841 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
560031 ATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCTAGTTTAAGCATGCGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * *
560096 GTCTAAGAT-AGGATTGGACTGAGGGTTGCGGCAGCACTTGCTGGGCTCGGGCATGTGCTGGTGC
66 GTCTAAGATCA-GATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
560160 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGA-CAGGCGGCATTT
130 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCA-GCGGCATTG
* * * * * *
560224 GGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTGCTTAG
194 GGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * ** * * * *
560289 CCCATATAATATCCCCGTATCCCTCATCAAACCTCGAGAACTCACGCCTCCTAAAAGAGCATTTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
560354 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACAATTTTTTCAAATG
324 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
*
560419 GTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
389 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
560484 AGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATGCCC-AAC
454 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-ACCCGAAC
* * *
560548 CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCTATGAAACTTCACGTGA
518 CGCAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
560613 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
560678 AGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCTG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
560743 GCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCAT
712 GCGTAGTGCCCGCCCG-CC-CCC-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * * *
560808 TCCCATTCTAGGATT-AGACCAGATCGAGGGTTACGGCAGCAAGATTGACAGCACGCAGAGAGGG
774 TCCCAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * *
560872 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTC
839 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
560933 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
560998 GTCTAAGATCAGACCTGATCGAGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCC
66 GTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
561063 GCATTTTTCTTCATCGGGGCACCATCATCGGAG-AAC-CC---G-A-CTG----GCGGCATTGGG
131 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
* * * * *
561117 GTTCTGACGATCGGAAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGTACTTGG
196 GTTCCGGCGATCGG-GGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* ** * *
561182 CCCTTATATTTGCCTGCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
561247 AGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
324 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* *
561312 GTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATGCA
389 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * *
561376 AGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCTGAAAAAATTTTAAAAAAATCACGAAC
454 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAA-CCCGAAC
* *
561441 CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAGACTTCACGTGA
518 CGCAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
561506 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG---TGGAACGTAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
561568 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCG
647 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * * * * * * *
561633 GC--A-----CTACCG-TCCACCCGCTCATTTCGTCGGTTAGCTTAGCCAAACGGAGTTCATTCC
712 GCGTAGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * * **
561690 TAGTCTAAGA-TCGGACCGGACCGAGGGTTACGGCAGTCGGATCAGCAGCACGCAAAAGAGGAAT
777 CAGTCTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * * * *
561754 CGGTCGATCCCCGGCTTGCGGATCCTGCTCCTCTGGCTGGTTGAGCACCCGCAAGCTC
842 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
561812 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
561859 -TC---G----GATCAGACCGAGGGTTGC-AGCAGCAAATGCTGGGCTCGGGCATGTGCTAGTGT
66 GTCTAAGATCAGATCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
561915 GGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTAG
130 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGG
*
561980 GGTTTCGGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
195 GGTTCCGGCGATC-GGGGGGCC-A-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
562045 GGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
562110 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * * * *
562175 TGGTCACAAAACCTTGTATACTTCAAGCTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATA
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * ** * *
562240 CAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATATTTCTGAAAAAA-TTTAAAAAAATCCTGA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAA-CCCGA
* *
562304 ACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAGCTTCACGT
516 ACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
562369 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATAT
580 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* ** * * **
562434 GATGATGCACCTAAACCCACATACCACCCTATCGATCCATGGCTTATGCATCCCGTCTCTCTGGC
645 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
562499 CGGCGTAGTGCCCGCCCACCCGCCCC
710 CGGCGTAGTGCCCGCCCGCCCCCCCC
562525 TTTCACCGGA
Statistics
Matches: 6868, Mismatches: 800, Indels: 354
0.86 0.10 0.04
Matches are distributed among these distances:
852 87 0.01
853 77 0.01
854 4 0.00
855 3 0.00
856 1 0.00
857 3 0.00
858 228 0.03
859 150 0.02
860 80 0.01
861 20 0.00
862 28 0.00
863 84 0.01
864 26 0.00
865 325 0.05
866 60 0.01
867 1 0.00
868 74 0.01
870 3 0.00
871 2 0.00
873 6 0.00
874 57 0.01
875 4 0.00
876 4 0.00
877 3 0.00
878 55 0.01
879 171 0.02
880 3 0.00
881 4 0.00
882 72 0.01
883 9 0.00
884 134 0.02
885 4 0.00
886 94 0.01
888 2 0.00
889 165 0.02
890 330 0.05
891 22 0.00
892 79 0.01
893 525 0.08
894 13 0.00
895 546 0.08
896 759 0.11
897 377 0.05
898 48 0.01
899 45 0.01
900 181 0.03
901 13 0.00
902 770 0.11
903 841 0.12
904 157 0.02
905 119 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
GTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAACCGC
AAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCCCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATTCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGAT
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
Found at i:558291 original size:26 final size:26
Alignment explanation
Indices: 558260--558311 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
558250 GTTGACTTAG
558260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
558286 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
558312 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:559189 original size:26 final size:26
Alignment explanation
Indices: 559153--559205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
559143 GTTGACTTAG
559153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
559179 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
559205 G
1 G
559206 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:560991 original size:26 final size:26
Alignment explanation
Indices: 560955--561004 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
560945 GACTTAGGCA
560955 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
560981 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
561005 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:562665 original size:13 final size:12
Alignment explanation
Indices: 562630--562661 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
562620 GTGCTCATTC
*
562630 TTGGCCCTTATA
1 TTGGCCCCTATA
562642 TTGGCCCCTATA
1 TTGGCCCCTATA
562654 TTGGCCCC
1 TTGGCCCC
562662 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:564249 original size:26 final size:26
Alignment explanation
Indices: 564213--564265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
564203 GTTGACTTAG
564213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
564239 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
564265 G
1 G
564266 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:565151 original size:26 final size:26
Alignment explanation
Indices: 565115--565167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
565105 GTTGACTTAG
565115 GCATACAGAGTTCATTCCTAGCCTAA
1 GCATACAGAGTTCATTCCTAGCCTAA
* *
565141 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGCCTAA
565167 G
1 G
565168 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGCCTAA
Found at i:565195 original size:902 final size:901
Alignment explanation
Indices: 562553--572791 Score: 11068
Period size: 905 Copynumber: 11.2 Consensus size: 901
562543 GTAGAAGCTA
* * *
562553 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTGCGCATGATGTGCGAT
1 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGAT
* *
562618 GGGTGCTCATTCTTGGCCCTTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGA
63 GGGTG------C-TGG----TA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
562683 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTG
116 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
562748 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTTAGTTGA
181 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGA
* * *
562813 ATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCT
245 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
562878 TCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACG
310 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
562943 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATA
375 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*** * *
563008 AAAATGGCATTGGCATGGAGAAATATGAAAATGTGCCTAAATCCACCTACCACCCTATCGATCCA
440 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
563073 CGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCG
505 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCG
** **
563138 TTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAG-ACTGAGGGTTGCGG
569 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAC-GAGGGTTGCGG
* * * * *
563202 CAGCAGGATCTGCAGCACGCAGAGGGGTACCTGGCCGATCCCCGGCTTGCGCATCCCACCCCTCT
633 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
563267 GGTCGGCTGAACGCCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCGTAC-GATGTTCATTCCCA
698 GGCCGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCA
* * * *
563330 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGGTA-CACA
761 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGCAGCACA
* * ** *
563394 TGCTGGGCTCGGGTATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTGTCA
825 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
563459 CCGGAGAACCTG
890 CCGGAGAACCTG
* *
563471 ACCGGCGGCATTGGGGTT-CGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
1 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
563535 GGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCC
64 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
563600 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACATTAAAGTGTCTCG-AATGGGG
129 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGG
563664 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
193 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
563729 TGCCAA-AGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
258 TGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** * *
563793 TTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAATATAGAAAACGAGTCGTCTTGCC
322 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
563858 ATGAAACTTTACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCTTAAAAATGGCATTG
387 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
563923 GCATGA-AGAAATATGAAGATGTGCCTAAACTCACCTACCACCGTATCGATCCATGGCTTGCGCT
452 GCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
563987 TCCTGTCTGTCTGCCCGGCATAGTGCCCGCCCACTCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
516 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTT
** * **
564052 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCAGGATCGG
580 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGG
* * * * * ** * *
564117 TAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCTCATCCTACCCCTCTGGCTGGCTGAGT
645 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
564182 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
564247 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * **
564312 TGTGCTGGTTCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTG
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
564374 ACTGGCGGCATTGGGGTTCCGGCGATCTGGGGGACCGGGGGGTGTACGCACATGATGTGAGATGG
1 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
564439 GTGCCGGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCC
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * *
564504 TTAAAGACCGTTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTATCTTAAATGTGGAC
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
564569 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTATTGTGCATG
195 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
564634 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
260 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
564699 AAAAATCCCAAACC-TAAAAGGTTTCAAAAATCATGAAAAATTGAAAATGAGTCGTCTTGCCATG
325 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
564763 AAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
390 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
564828 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCC
455 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
564893 GCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCATCGGTTGGCTTTGGC
520 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** *
564958 ATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGAACGAGGGTCACGGCAGCAGGATCGACAGC
584 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGGCAGC
** * * * *
565023 ACATAGTGGGGGACCCGGTCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
649 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
565088 GCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCTAGCCTAAGCATACGGAGTT
714 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** *
565153 CATTCCTAGTCTAAGATTGGACCAGACCGAGGGTAACGGCAGCACATGCTAGGCTCGGGCATGTG
779 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * *
565218 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCCG
844 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
565276 ATCGACAGCATTGGGGTTCCGGCGAACGGGGGGGCCGGAGGGGGGTGTGCGCACATGATGTGCGA
1 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGA
*
565341 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACC
62 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
565406 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGG
127 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
565471 GACGCTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGC
192 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
565536 ATGCCAACAAAAATACACGGATCACGAGTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATT
257 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
565601 TTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
322 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* **
565665 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAATCATAAAAATGGCATTG
387 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
565730 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
452 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
565795 CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGTCCACTCGTTTCGTCGGTTCGCTTA
517 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
565860 GGCATACGGAGTTCAATCCCAGTCCAAGATCAGACCAGAATGAGGGTTGTGGCAGCAGGATCGGC
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGGC
* * * * ** * * * * *
565925 AGCACGTAGTGGGGGACCCGATCGATCCCCGCCTTATGCAACCTGGCCCTCTGGCTGGCTGAGCA
646 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
565990 CCCACACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGA
711 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
566055 GTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
776 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* *
566120 GTGCTGGAGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
841 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
** * * * *
566181 ATTGGCAGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTACGTACATGATGTGCGATGGG
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
566246 TGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCT
66 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
566310 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
131 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
566375 CTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTAAATTGTTTTGTGCATGC
196 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
566440 GAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAA
261 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
566505 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAAGA
326 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
566570 AACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCAC
391 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * *
566635 GCAGAAATATGAAGATATTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCA
456 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
566700 TCTCTCTGGCCGGCATAGTGCCCGCCCGCCCATCCG-GCGCTCGTTTCATCGGTTGG-TTCAGGC
521 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGGC
* ** * * * *
566763 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGC
584 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGGCAGC
* * ** * * * * *
566828 ATGCAAAGTAGGACCC-GACTGATCCCTGGCTTGCGCATCCTGCCCCTCTGCCCGACTGAGCGCC
649 ACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
566892 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGT
713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * ** * *
566957 TCATTCACAGTCGAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
778 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* ** *
567022 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGCCGTCGGAGAACCTG
843 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * * * * *
567081 ACCGGTGACAATGGGGTTCCGATGATCAGGGGGG-C-GGGGGTGTACGTAGATAATGTGCGATGG
1 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
567144 GTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCC
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
567209 TTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGAC
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
567274 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
195 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
567339 CTAAC-AAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTA
260 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * *
567403 AAAAATCCCGAACCGTAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
325 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
567468 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
390 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
567533 CATAGAAATATGAAGATGTGCCCAAACCAACCTACCACCCCATCGATCCATGGCTTGCGCAT-CC
455 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
567597 GTCTCTCTGGCTGACATAGT----GCCCG--C-CCACCCGTTCGTTTCATCGGTTGGCTTAGGCA
520 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * **
567655 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGCTATGGCAGCAGGATCGGCAGCA
585 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * *
567720 CGCAAAGGGGGACCCAATCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCG
650 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * * *
567784 CACGCTTGTTCCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAG-AT-C-GA-ATC
715 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * * * * * **
567845 AGACCGAGGGTTGCGGTAGTAGGATC-GA-CAGCACACAGAGGG-GGACCCGACTGATCCCCGGC
780 ATTCCCA--G-T-C--TA--A-GATCGGACCAG-AC-C-GAGGGTTG---CGGC--AGCACATGC
* ** * * * *** *
567907 TTGTGCATCCCGCCCCTCTGGCAAGCTGAGCGCCCGCA-CGCTCGTTTCGT-GGGTTG-ACTTAG
828 -TGGGC-T--CG-GGC-AT-G--TGCTG-GTG-CCGCATTTTTC--TTCGTCGGG--GCAC-CA-
* * *** *
567969 GCATACGGAGTTCATTC-CCAGTCTAAGCAT-
876 TCGT-CGGAG--CA-TCGCC-GGAGAA-CCTG
* * * *** * * * * * * *
567999 A-TGGAGTTCATTTCCAG-T-CTAAGATCGGATCGGACCGAGGGTTGCAGCTGCACATGCTATGC
1 ACCGGCG-GCA-TTGGGGTTCCGACGATCGG--GGGGCCGGGGGGTG-TGC-GCACATG--ATG-
* * * * *** * * * * * ** * * *
568061 TCGGGCATGTGTTGGTGCCGCA-TT-TTTCTTCGT-TGGGGCACC-ACCGCCGGAGC-ATCGTCG
57 T-GCG-ATG-GGTGCTG--GTACTTGGCCCTT-ATATTGGCCCCCTATC-CCTCATCAAACCTCG
* **** * * * *** * *
568121 AAGAACCTGACTGGTAGCATT--AG-G-GTTCCGAAGATTGGGGGGCCGGGGGGGGTGTGC-GCA
115 -AGAA-CTCAC--ACCCCCTTAAAGAGCATT-TG-AGATT----TTAC-----AGGTTTGCTGC-
* * **** * * ** * **
568181 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCGTCAAACCTCG
164 CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T---TTTTCAAA--T-G
* **** ** * * * ** * * ** **
568246 AGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTA-C--AGGTTTGTTG-CCAGTAACAATTA
209 -G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAA
* * * ** * *
568307 AAATGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAGTT
267 AAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA---
** * * **
568367 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-ACAAGGATCATGTCTACCAAGTTTGGGGC
315 ---A----AA---AATT-T---T----A-AAAAATCCCAA--A-C-CG--TAAAAAGTTT-----
568431 CAAAACTCCTTTCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACA
350 -----------------------C-AAAAA--T-----CGT-----G----AAAAA---T-----
* * *
568496 ACAGAAAACGAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTT
367 --AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * * *
568561 ACAAGCCATAAAAATGGAATTGGCACGCAGAAATATGAATATGTGCCAAAATCCACCGACCACCC
430 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
568626 TATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG--C-CCGCCCG
495 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCG
* * * *
568688 TTCGTTTCGTCGGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAA
560 CTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGA
* * * * * *
568753 AGGTTGCAGCAGTAGGATTGGCAACACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCC
624 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
* * *
568818 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACCGGAGTT
689 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGGAGTT
* ** *
568883 CATTCCCAGTCTAA-CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGG
753 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
568947 CAGCACATGGTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTT--TACTGGGGCACCATCGTC
818 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-C-GGGGCACCATCGTC
*
569010 GGAGCATCGCCGAAGAACCTG
881 GGAGCATCGCCGGAGAACCTG
* * * *
569031 ACCGGCAGTATTGGGGTTCCGATGATCGGGGGGCCGGGAGGGGGGTGTGCGCACATGATGTGTGA
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC----GGGGGGTGTGCGCACATGATGTGCGA
* * *
569096 TGGGTGCTGGTACTTTGCCCTTATATTAG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACC
62 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
569160 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTTGCCATTAAAGTGTCTGAAATGGG
127 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
569225 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
192 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
569290 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAGT
257 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
569354 TTCAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAATGAGTCGTCTTGCC
322 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
569419 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTG
387 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
569484 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCAT
452 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
569549 CCCGTCTCTCTGACTGACGTAGTGCCTGTCCGCCCGCCTGCCCGCTCCTTTCGTCGATTGGCTTA
517 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * *
569614 GGCACACGGAGTTTATTCCTAGTCTAAGATTAGAGC-GAACCAAGGGTTGCGGTAGTAAGATCGG
581 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-CGAGGGTTGCGGCAGCAGGATCGG
* ** * * *
569678 CAGCACGTAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAAC
645 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
569743 ACCCACACGCTCGTTTCAT-GG--G---T-----T---G-G--C-TT---AG----A-CATATGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
569782 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAAATGCTGGGCTCGGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
569847 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGTAGCATCGCCAGAGAACCTG
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
*** * * * *
569909 ACCGGCGGCATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGCGTGCCCACAAT-ATGTGCAATGG
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTGCGATGG
569973 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * *
570038 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCAAGTAGCCATTAAAGTTTCGGAAATGCGGTC
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
570103 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
195 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * **** **
570168 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAAGGATTTCTAAAAAAATTT
260 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTCCTTCCGAAAAAATTT
* * * * *
570233 TCACAAAT-CAAGAACCGTAAAGAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
323 TAAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
570297 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGGCATAAAAATGGCATTG
387 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
570362 GCATGA-AGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
452 GCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
570426 TCTCGTCTCTCTGGCCGACGTAGTGCCTGCCCG--C-CCGCCCGTTC-TATTCGTCGGTTGGCTT
516 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGT-TTCGTCGGTTGGCTT
* ** * * * *
570487 AGGCATACGGAGTTCATTCCCAGTCGAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGG
580 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGG
* ** * ** * * *
570552 TAGCACATAGAGGGGGACACGGTCGATCCTTGGCTTGCGCGTCCCGCCCCTCCGGCCGGTTGAGC
645 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
570617 GCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGG
710 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
570682 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCATATGCTGGGCTCGGGCA
775 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * * *
570747 TGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGCCAGAGCATCGCCAGAGAACCTG
840 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* *
570809 ACCGCCAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
1 ACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
** * *
570874 GTGCTGGTACTTGGCCCTTATATTGGCCAACTATCCCTTATCAAACCTCGAGAAATCACACCCCC
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
570939 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGA
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGA
** * *
571003 TGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGCAT
194 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
571068 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTT
259 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *** * * ** *
571132 CAAAAATCTTGAACCGTAAAGATTTTTGAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCCAT
324 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
571197 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGC
389 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
571262 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGCGCATCC
454 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
571327 CGTCTCTCTGACCGACGTAGTGCCTGCCCGCCCGCCTGCCCGCTCCTTTCGTCGATTGGCTTAGG
519 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
571392 CACACGGAGTTCATTCCTAGTCTAAGATCGGAGC-GAACCGAGGGTTGTGGCAGTAAGATTGGCA
583 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-CGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
571456 GCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAACAC
647 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
571521 CCGCACGCTTGTTTCGT-GG--G---T-----T---G-G--C-TT---AG----A-CATATGGAG
712 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
571560 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATG
777 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
571625 TGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
842 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
** * * * *
571685 ACCGATGGCATTAGGGTTCTGACGATCAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGG
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
571750 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCT
66 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
571815 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACA
131 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
571880 CTTTTTTCAAATAGTAACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGC
196 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** *
571945 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAATTCCTTCCGAAAAAATTTTAA
261 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
572010 AAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
326 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
572075 AACTTCACGTGAAGGCTTAAGGGACCGTTGTATTAAGTTACAAGCCATAAAAATGGCATTGGTAT
391 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
572140 GCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
456 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
572205 TCTCTCAGGCCGGTGTAGTGCCCGCTCGCCCGCCTGCCCGCTCATTTCGTCGGATGGCTTAGGCA
521 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * **
572270 TACAGAGTTCATTCCCAGTCTAAGAT-TGAATC-GAACCAAGGGTTGCGACAGCAGGATCGATAG
585 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAA-CGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
572333 CACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCGCC
648 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
572398 TGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAGCATACGGAGT
713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
** * * * *
572463 TCATTCCCAGTCTAAGAAT-GGACTGGACCGAGGATTGCGGTAGCATATACTGGGCTCGGGCATG
778 TCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * *
572527 TGCTGGTGCCATATTTTTCTTC-ACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
842 TGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
*
572587 ACCGGCGGCATTGGGGTTCCTGA-GATCGAGGGGGCCGGGTGGGGTGTGCGTACATGATGTGCGA
1 ACCGGCGGCATTGGGGTTCC-GACGATCG-GGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGA
*
572651 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
62 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
572716 CCATTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGG
127 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
572781 GACACTTTTTT
192 GACACTTTTTT
572792 TGTGCATGCC
Statistics
Matches: 7879, Mismatches: 1081, Indels: 735
0.81 0.11 0.08
Matches are distributed among these distances:
873 1 0.00
874 182 0.02
875 472 0.06
876 504 0.06
877 11 0.00
878 356 0.05
879 3 0.00
880 2 0.00
881 2 0.00
882 3 0.00
884 2 0.00
885 4 0.00
886 6 0.00
887 4 0.00
888 5 0.00
889 5 0.00
890 87 0.01
891 96 0.01
892 7 0.00
893 4 0.00
894 11 0.00
895 8 0.00
896 6 0.00
897 3 0.00
898 238 0.03
899 293 0.04
900 869 0.11
901 671 0.09
902 799 0.10
903 902 0.11
904 315 0.04
905 970 0.12
906 11 0.00
907 1 0.00
908 1 0.00
909 7 0.00
910 5 0.00
911 11 0.00
912 7 0.00
913 2 0.00
914 2 0.00
915 6 0.00
916 26 0.00
917 32 0.00
918 27 0.00
919 5 0.00
920 8 0.00
921 1 0.00
922 4 0.00
924 3 0.00
925 2 0.00
926 2 0.00
927 16 0.00
928 24 0.00
929 14 0.00
930 2 0.00
931 3 0.00
933 1 0.00
937 2 0.00
938 8 0.00
939 1 0.00
940 1 0.00
941 4 0.00
942 1 0.00
943 2 0.00
944 1 0.00
945 1 0.00
946 1 0.00
951 7 0.00
952 1 0.00
955 6 0.00
956 8 0.00
957 1 0.00
958 2 0.00
959 1 0.00
960 3 0.00
961 16 0.00
962 16 0.00
963 2 0.00
964 11 0.00
965 3 0.00
966 9 0.00
967 1 0.00
968 8 0.00
969 4 0.00
970 2 0.00
971 3 0.00
972 2 0.00
973 2 0.00
977 2 0.00
981 2 0.00
983 4 0.00
984 4 0.00
985 2 0.00
986 3 0.00
987 8 0.00
988 2 0.00
989 8 0.00
990 13 0.00
991 2 0.00
992 13 0.00
993 22 0.00
994 3 0.00
995 2 0.00
996 2 0.00
997 1 0.00
998 8 0.00
999 6 0.00
1002 1 0.00
1003 8 0.00
1008 1 0.00
1009 1 0.00
1010 1 0.00
1011 2 0.00
1012 1 0.00
1013 6 0.00
1014 1 0.00
1015 1 0.00
1016 7 0.00
1017 2 0.00
1021 1 0.00
1023 3 0.00
1024 49 0.01
1025 88 0.01
1026 79 0.01
1027 84 0.01
1028 49 0.01
1029 34 0.00
1030 74 0.01
1031 175 0.02
1032 110 0.01
1033 94 0.01
1034 85 0.01
1035 91 0.01
1036 709 0.09
1037 96 0.01
1038 82 0.01
1039 108 0.01
1040 80 0.01
1041 68 0.01
1042 31 0.00
1043 45 0.01
1044 27 0.00
1045 40 0.01
1046 28 0.00
1047 48 0.01
1048 38 0.00
1049 34 0.00
1050 29 0.00
1051 6 0.00
1052 25 0.00
1053 286 0.04
1054 80 0.01
1055 32 0.00
1056 31 0.00
1057 19 0.00
1058 131 0.02
1059 256 0.03
1060 153 0.02
1061 67 0.01
1062 28 0.00
1063 51 0.01
1064 45 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
Found at i:566071 original size:26 final size:26
Alignment explanation
Indices: 566020--566072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
566010 GTTGACTTAG
*
566020 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
566046 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
566072 G
1 G
566073 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:567973 original size:159 final size:158
Alignment explanation
Indices: 567631--567995 Score: 473
Period size: 158 Copynumber: 2.3 Consensus size: 158
567621 GCCCACCCGT
* * * *
567631 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
* * *
567696 GCTATGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCAATCGATCCCGGCTTGCGCATCCCAC
66 GCTACGGCAGCAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCGGCTTGCGCATCCCAC
** *
567761 CCCTCTGGCCGGTTGAGCGCCCGCACGC
131 CCCTCTGGCAAGCTGAGCGCCCGCACGC
* * * * *
567789 TTGTTCCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGATC-GAATCAGACCGAG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAG
* * * * * * *
567853 GGTTGCGGTAGTAGGATCGACAGCACACAGAGGGGGACCCGA-CTGATCCCCGGCTTGTGCATCC
65 GGCTACGGCAGCAGGATCGACAGCACACAAAGGGGGACCCAATC-GAT-CCCGGCTTGCGCATCC
*
567917 CGCCCCTCTGGCAAGCTGAGCGCCCGCACGC
128 CACCCCTCTGGCAAGCTGAGCGCCCGCACGC
*
567948 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
567996 CATATGGAGT
Statistics
Matches: 175, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
157 2 0.01
158 89 0.51
159 84 0.48
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (158 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
GCTACGGCAGCAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCGGCTTGCGCATCCCAC
CCCTCTGGCAAGCTGAGCGCCCGCACGC
Found at i:568005 original size:26 final size:26
Alignment explanation
Indices: 567969--568021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
567959 GTTGACTTAG
567969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
567995 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
568021 G
1 G
568022 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:569545 original size:901 final size:897
Alignment explanation
Indices: 567805--572791 Score: 6552
Period size: 901 Copynumber: 5.6 Consensus size: 897
567795 CATGGGTTAA
* * * * *
567805 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATC-GAATC-AGACCGAGGGTTGCGGTAGTAGG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCAAGGGTTGCGGCAGTAGG
* * * **
567868 ATCGACAGCACACAGAGGGGGACCC-GACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCAAG
64 ATCGGCAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
567932 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
128 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * **
567997 ATATGGAGTTCATTTCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCAGCTGCACATGCTATGC
193 ATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * *
568061 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTTGGGGCACCACCGCCGGAGCATCGTCGAAGAA
257 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGAAGAA
* * * * *
568126 CCTGACTGGTAGCATTAGGGTTCCGAAGATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGC
322 CCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGC
* * *
568191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCGTCAAACCTCGAGAACCCACA
385 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
568256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAACAATTAAAATGTCTGAAATG
450 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
568321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
515 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
568386 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
580 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAA
* * *
568451 -TTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAACAGAAAACGAATCATCTT
644 TTTTC-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTT
* *
568515 GCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGAA
708 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
568580 TTGGCACGCAGAAATATGAATATGTGCCAAAATCCACCGACCACCCTATCGATCCACGGCTTGCG
773 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
568645 TATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTTCGTTTCGTCGGTTTGG
838 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCTTTCGTCGG-TTGG
* * * *
568706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAAGGTTGCAGCAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGAT
* * * *
568771 TGGCAACACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
66 CGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
568836 AGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACCGGAGTTCATTCCCAGTCTAA-CAT
131 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGCAT
* * * *
568900 ACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGGTGGGCTTG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
568965 GGCATGTGCTGGTGCTGCATTTTTCTTTACTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGAAGAACCT
* * *
569030 GACCGGCAGTATTGGGGTTCCGATGATCGGGGGGCCGGGAGGGGGGTGTGCGCACATGATGTGTG
325 GACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCC----GGGGGGTGTGCGCACATGATGTGCG
* * *
569095 ATGGGTGCTGGTACTTTGCCCTTATATTAG-CCCCTATCCCTCATCAAACCTTGAGAACTCACAC
386 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
569159 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTTGCCATTAAAGTGTCTGAAATGG
451 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
569224 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
516 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
569289 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGT
581 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
* *
569354 TTCAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAATGAGTCGTCTTGCC
646 TTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCC
*
569419 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTG
711 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
569484 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCAT
776 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
569549 CCCGTCTCTCTGACTGACGTAGTGCCTGTCCGCCCGCCTGCCCGCTCCTTTCGTCGATTGG
841 CCCGTCTCTCTGGCCGACGTAGTG-C---CCGCCCGCCCGCCCGCTCCTTTCGTCGGTTGG
* * * * * * *
569610 CTTAGGCACACGGAGTTTATTCCTAGTCTAAGATTAGAGCGAACCAAGGGTTGCGGTAGTAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGAT
** ** * *
569675 CGGCAGCACGTAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
66 CGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
569740 AACACCCACACGCTCGTTTCATGGGTTGGCTTAGACATATGGAGTTCATTCCCAGTCTAAG-AT-
131 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
569803 C--AG---------A--C------C--A---GACCGAGGGTTGCGACAGTAAATGCTGGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * *
569844 GCATGTGCTGGTGCCGTATTTTTCTTC-GTCGGGGCACCATCGCCGTAGCATCGCC-AGAGAACC
261 GCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGCCGGAGCATCGCCGA-AGAACC
* *** * * * *
569907 TGACCGGCGGCATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGCGTGCCCACAAT-ATGTGCAAT
324 TGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTGCGAT
569971 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
570036 CCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCAAGTAGCCATTAAAGTTTCGGAAATGCGG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
570101 TCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
518 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * **** *
570166 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAAGGATTTCTAAAAAAAT
583 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTCCTTC-CAAAAAAT
* ** * * *
570231 TTTCACAAATCAAGAACCGTAAAGAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
645 TTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTTGC
* *
570296 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGGCATAAAAATGGCATT
710 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
570361 GGCATGA-AGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
775 GGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
570425 ATCTCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCG-TTCTATTCGTCGGTTGG
839 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCT-TTCGTCGGTTGG
* ** * * * * *
570484 CTTAGGCATACGGAGTTCATTCCCAGTCGAAGATTGGACCGGACCGAGGGTTACGACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGAT
* * * ** * * *
570549 CGGTAGCACATAGAGGGGGACACGGTCGATCCTTGGCTTGCGCGTCCCGCCCCTCCGGCCGGTTG
66 CGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
570614 AGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATA
131 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
570679 CGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGTGGCAGCATATGCTGGGCTCG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* ** *
570743 GGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGCCAGAGCATCGCC-AGAGAACC
260 GGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGA-AGAACC
*
570807 TGACCGCCAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
324 TGACCGGCAGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
** * *
570872 GGGTGCTGGTACTTGGCCCTTATATTGGCCAACTATCCCTTATCAAACCTCGAGAAATCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
570937 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGG
** * *
571001 GATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGC
517 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
571066 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTT
582 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTT
* * * **
571131 TCAAAAATCTTGAACCGTAAAGATTTTTGAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCCA
647 TCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCCA
*
571196 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGG
712 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
571261 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGCGCATC
777 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
571326 CCGTCTCTCTGACCGACGTAGTGCCTGCCCGCCCGCCTGCCCGCTCCTTTCGTCGATTGG
842 CCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCTCCTTTCGTCGGTTGG
* * * * * * *
571386 CTTAGGCACACGGAGTTCATTCCTAGTCTAAGATCGGAGCGAACCGAGGGTTGTGGCAGTAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGAT
* ** * * *
571451 TGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
66 CGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
571516 AACACCCGCACGCTTGTTTC----G-TG-----GG--T--TG-G--C-TT---AG----A-CATA
131 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* ** *
571555 TGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * *
571620 GCATGTGCTGGTACCGCATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
261 GCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGCCGGAGCATCGCCGAAGAACCT
*** * * * *
571684 GACCGATGGCATTAGGGTTCTGACGATCAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGG
325 GACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
571749 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCCC
390 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
571814 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGAC
455 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
571879 ACTTTTTTCAAATAGTAACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATG
520 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * *
571944 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAATTCCTTCCGAAAAAATTTTA
585 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTC
* * * * *
572009 AAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
649 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCCATG
* * * *
572074 AAACTTCACGTGAAGGCTTAAGGGACCGTTGTATTAAGTTACAAGCCATAAAAATGGCATTGGTA
714 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
572139 TGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
779 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * * *
572204 GTCTCTCAGGCCGGTGTAGTGCCCGCTCGCCCGCCTGCCCGCTCATTTCGTCGGATGG
844 GTCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCCCGCCCGCTCCTTTCGTCGGTTGG
* * * * *
572262 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAATCGAACCAAGGGTTGCGACAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAAGGGTTGCGGCAGTAGGA
** * * *
572326 TCGATAGCACACAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGACCGGCT
65 TCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
572391 GAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAGCAT
130 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
572456 ACGGAGTTCATTCCCAGTCTAAGAAT-GGACTGGACCGAGGATTGCGGTAGCATATACTGGGCTC
195 ACGGAGTTCATTCCCAGTCTAAG-ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * *
572520 GGGCATGTGCTGGTGCCATATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
259 GGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGAAGAACC
* *
572585 TGACCGGCGGCATTGGGGTTCCTGA-GATCGAGGGGGCCGGGTGGGGTGTGCGTACATGATGTGC
324 TGACCGGCAGCATTGGGGTTCC-GACGATCG-GGGGGCC-GG-GGGGTGTGCGCACATGATGTGC
*
572649 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
385 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
572714 CCCCATTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATG
450 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
572779 GGGACACTTTTTT
515 GGGACACTTTTTT
572792 TGTGCATGCC
Statistics
Matches: 3572, Mismatches: 414, Indels: 196
0.85 0.10 0.05
Matches are distributed among these distances:
872 2 0.00
873 3 0.00
874 228 0.06
875 468 0.13
876 493 0.14
877 11 0.00
878 322 0.09
879 1 0.00
880 1 0.00
881 5 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 2 0.00
888 2 0.00
889 2 0.00
890 2 0.00
891 2 0.00
892 2 0.00
893 1 0.00
894 2 0.00
895 1 0.00
897 6 0.00
898 206 0.06
899 7 0.00
900 115 0.03
901 743 0.21
902 521 0.15
903 89 0.02
904 149 0.04
905 180 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGAT
CGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTG
ACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTCAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCTTTCGTCGGTTGG
Found at i:570684 original size:26 final size:26
Alignment explanation
Indices: 570648--570700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
570638 GTTGACTTAG
570648 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
570674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
570700 G
1 G
570701 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:572456 original size:26 final size:26
Alignment explanation
Indices: 572426--572478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
572416 GTTGACTTAG
*
572426 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
572452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
572478 G
1 G
572479 AATGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:574974 original size:158 final size:158
Alignment explanation
Indices: 574702--575054 Score: 474
Period size: 158 Copynumber: 2.2 Consensus size: 158
574692 CGTTTCCTCA
* *
574702 GTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGACTGGATCGAGGGTTATGGCAGTA
1 GTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGACCGGATCGAGGGTTATGGCAGTA
* * * ** * *
574767 GGATCGGCAGCACGTAGAGGGGTACAAGGTCGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCCG
66 GGATCGGCAGCACGCAGAGGGGGACAAGGTCAATCCCCGGCTTACGCATCCCGCCCCTCTAGCCG
574832 GCTGAGCACCCGCACGCTCATTTCATGG
131 GCTGAGCACCCGCACGCTCATTTCATGG
* *
574860 GTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGACCGGA-CTGAGGGTTGTGGTAGT
1 GTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGACCGGATC-GAGGGTTATGGCAGT
* * ** * * *
574924 GGGATTGGCAGCACGCAGAGGGGGACCTGGTCAATCGCTGGCTTACGCATCTCGCCCCTCTAGCC
65 AGGATCGGCAGCACGCAGAGGGGGACAAGGTCAATCCCCGGCTTACGCATCCCGCCCCTCTAGCC
* * * * *
574989 GGCTGAGCGCTCGCACGTTCGTTTCGTGG
130 GGCTGAGCACCCGCACGCTCATTTCATGG
575018 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
575055 CATACGGAGT
Statistics
Matches: 170, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 159 0.94
159 10 0.06
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATTAGACCGGATCGAGGGTTATGGCAGTA
GGATCGGCAGCACGCAGAGGGGGACAAGGTCAATCCCCGGCTTACGCATCCCGCCCCTCTAGCCG
GCTGAGCACCCGCACGCTCATTTCATGG
Found at i:575064 original size:26 final size:26
Alignment explanation
Indices: 575028--575080 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
575018 GTTGACTTAG
575028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
575054 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
575080 G
1 G
575081 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:575962 original size:26 final size:26
Alignment explanation
Indices: 575926--575978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
575916 GTTGACTTAG
*
575926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
575952 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
575978 G
1 G
575979 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:576631 original size:898 final size:898
Alignment explanation
Indices: 574859--581281 Score: 8150
Period size: 898 Copynumber: 7.2 Consensus size: 898
574849 TCATTTCATG
* * * * ** **
574859 GGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTAGACCGGACTGAGGGTTGTGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
** * * * ** * * * * * * * *
574923 TGGGATTGGCAGCACGCAGAGGGGGACCTGGTCAATCGCTGGCTTACGCATCTCGCCCCTCTAGC
66 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC
* *
574988 CGGCTGAGCGCTCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
131 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
575053 AGCATACGGAGTTCATTCCTAGTCTAAGATCTGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
196 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
575118 GCTTGAGCACGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
261 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
575183 AACCTAACCGGCGGCA-TGGGGTTTCGACGATCGAGGGGGCGGGGGAGGTGTGCGCACATGATGT
326 AACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGG-GGTGTGCGCACATGATGT
** *
575247 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAACTATCCCTTATCAAACCTCGAGAACTCA
389 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
575312 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAA
454 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
575377 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTGTTT
519 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
*
575442 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCTCCTTCCGAAAA
584 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
575507 AA-TTTAAAAAAT-CCAGAACCATAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATC
649 AATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
575570 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAGAAATGG
713 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
575635 CATT--CACGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
778 CATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
575698 TGCGTATCTCGTCTCTCTGGCCTGCGTAATGCCCGCCCGCCCGCCTGCTCGTTTCGTC
841 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* *
575756 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* * * * * *
575821 CAGGATCAAAACCATGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCACCCTTC-GGC
66 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC
575885 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
131 CGGCTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
575950 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCCAGGGTTGTGGCAGCACATGCTG
195 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
*
576015 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGCGCACCATCGTCGGAGCATCACCGGA
260 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * *
576080 GAACCTGACCGATGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
325 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
576145 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
389 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
576210 CACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
454 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
576275 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTT
519 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
* * * *
576340 GTACATGCCAAAAAAAATACAAGGAT-ATGTCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
584 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
576404 AATTTCAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGTAAACGAGTCGTCT
649 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
576469 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
714 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
576534 ATTGGCATGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTAC
779 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
576599 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCATTTCGTC
844 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT----GCTCGTTTCGTC
* * * * *
576658 GATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGATGC-AGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CA
* * * * * *
576722 ACAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
65 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGG
* * * * *
576787 CCGACTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCT
130 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
576852 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTG
195 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * **
576917 GGCCCGGGCATGTGCTGGTGCCACATTTTTCTTCTTC--GGCACCATCGCCGAAGCATCGTCGGA
260 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * *
576980 GAACCTGACC-AGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGT
325 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGT
*
577044 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
389 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
577109 CACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
454 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
** * * *
577172 ATGGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTATACTGT-GAGTTTTTAGCTGACTTTTT
518 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTAAATTTTT
* * ** *
577236 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCTGAAACTCCTGCCGAA
582 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *** * * * * *
577301 AAAATTCAAAAAAATCTTGAATCGCAAAAAGCTTT-GAAAATCATGAAAAATAGAAAACGAGTCA
647 AAAATTTTAAAAAATCCCAAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
** * * * * * *
577365 TCTCACCATTAAACTTCATGTGAAGGCTTAAAGGACCAATGTATGAATATACGAGCCATAAAAAT
711 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
577430 GGCATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
776 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
577495 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCAC-CCTCCCGCTCGTTTCGTC
841 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CGCCT---GCTCGTTTCGTC
* * *
577557 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAG-TCGAGGGTT------G
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* * * * *
577615 C--G---G-CAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGC
66 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC
* ** * * * * **
577674 CGGTTGAGCAACCGTACGCTCATTTTGTGGGTTGACTGAGGCATACAAAGTTCATTCCCAGTCTA
131 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
577739 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGG
196 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * **
577804 GCTTGGGCATGAGCTGGTGCCGCATTTTTCTTCATCGAGACACCATCGCCGGAGCATCGTCGGAG
261 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
577869 AACCTGACTGGCGGCATTGGGGTTCCAACGATCGGGGGGCCGAGGGCGGGGTGTGCGCACATGAT
326 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCC---GG-GGGGTGTGCGCACATGAT
*
577934 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
387 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
577999 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGA
452 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
578064 AATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTATAGTTCGAGTTTTTAGCTGAATATTT
517 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * * *
578129 TTGTGCATGCCAAAAAAAATAAAAGGATGACGTCTA-CAACGTTTGGGGCCAAAACTCCTTCCAA
582 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGA
* ** *
578193 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCG
646 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
578257 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAAT
711 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
578322 GGCATTGACATGCAGAAATATGAAGATGTGCCTCAATCCACTTACCACCCTATCGAT-CATTGGC
776 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGC
* * * *
578386 TTGCGCATCCTGTCGCTCTGGCCGGTGTAGTGCCTGCCCGCCCGCCCGCCTGCTAGTTTCGTC
840 TTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * *
578449 AGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGATCAGACCGAGGG-TAGCGACA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA-CGACA
* * * * * * * *
578513 GTAGGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGTTTGTGCATCCCGCCCTTCTGG
65 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGG
578578 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA---AG--------CA---T
130 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
578623 --G----CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTG
195 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* **
578682 GGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACC-TCGTCGGAGCATCACCGGA
260 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * *
578746 GAACCTGACCGGCGGCATTGAGGTTTCGACGATCAGGGGGCCGGGGGGTGTGTGCACATGATGTA
325 GAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
578811 CGATGGGTGCTAGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
390 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
578876 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAAT
455 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
578941 GGGGACATTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTA
520 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
* * * *
579006 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTT-GGGCTAGAACTCCTTTCGAAAAA
585 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
579070 ATTTTAAAAAATCACGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAC-AGGTCGTCT
650 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCT
579134 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
714 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
579199 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGC
779 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
579264 GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGTACGCTAGTTTCGTC
844 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-T--GCTCGTTTCGTC
** * * * * * *
579323 AATTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCTG-T
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTAC-GAC
* * * * * * * *
579386 AGCAGGATTGGCAGCATGCAGAGGGGGACCC-AGCCGATCCTCGACTTGCGAAATCTCACCCCTC
64 AGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG-CATCCCACCCTTC
* * * *
579450 TGGCCGGTTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
127 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
579515 TCTAAGCATACGGAGTTCATTCCGAGTCTAAGATCGGATCGGAACGAGTGTTGCGACAACACATG
192 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
579580 CTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
257 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
** * * * * *
579645 GTTGAACCTGACCGACGACATTGGGGTTCTGGCGATCAAGGGGGTCGGGGGGTGTGCGGACATGA
322 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGA
*
579710 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
386 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
579775 TCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
451 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
579840 AAATGGGGACACTTTTTTC-AA---T-ACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTT
516 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
* * *
579900 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGAGCCAAAACTCCTTCCGA
581 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
579965 AGAAATTTTAAAAAATCCTTAACCGTAAAATGTTTCAAAAATCATGAAAAAT-GAAAAACGAGTC
646 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTC
* *
580029 GTCTTACCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
710 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
580094 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCTATCCACGGC
775 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
580159 TTGCGCATTCCGTCTCTCTGGCCAGCGTAGTGCCCGTCCG---TCC-GCTCATTTCGTC
840 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * * **
580214 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGCGTTGCGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* *** * *
580279 CAGGATC-AAAGCACGCA-ACGGGGGACCCGGTTGGTCCCCGGCTTGCGCATCCCTCCCCTT-TG
66 CAGGATCGACAGCACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-ACCCTTCTG
* * * * * * *
580341 GCCGGCTGAGCACTCGTACGCTTGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
129 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * * * *
580406 TAAGCATATGGAGTTCATTTCTGGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCACGTGCT
194 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * * **
580471 GGGCTCGGGCATATGCT-GTAGCTGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCG
259 GGGCTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* *
580535 GAGAACCTGACCGACAGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATG
323 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATG
** *
580600 TGCGATTAGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
388 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
580665 ACAGCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGA
453 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
580730 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCAAG-TTTTAGCTGAATTTTTT
518 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
* * * *
580794 TGTGCATGCCAACAGAAATACAAAGATCACGTTTACCATGTTTGGGGCCAAAA---C-T-C----
583 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
580850 --A---T------T------CCGAAAAAAGTTT--AAAATCGTGAAAAATAGAAAACGAGTCATC
648 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
580896 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
713 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
580961 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
778 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** *
581026 AGCATCCCGTCTCTTTGGCCGGCGTGGTGCCTGCCCGCTCGTCGGCCCACTCGTTTGGTC
843 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C--C-GCCTGCTCGTTTCGTC
* * * * * **
581086 GGTTGGCTTAGGTACACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* * * * * * ** * *
581151 CAAGATTGGCAGCACGTAGAGGGGGACCCGGCTGATCCTTGGCTTGTGCATCCCACCCCTCTGGC
66 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC
* * *
581216 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTAATTCCCAGTCTA
131 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
581281 A
196 A
581282 AATCAGACTG
Statistics
Matches: 4850, Mismatches: 557, Indels: 262
0.86 0.10 0.05
Matches are distributed among these distances:
864 179 0.04
865 1 0.00
866 11 0.00
870 13 0.00
871 4 0.00
872 79 0.02
873 156 0.03
874 493 0.10
875 54 0.01
876 1 0.00
878 54 0.01
879 91 0.02
881 3 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 192 0.04
887 2 0.00
888 230 0.05
889 205 0.04
890 34 0.01
891 73 0.02
892 400 0.08
893 195 0.04
894 3 0.00
895 8 0.00
896 12 0.00
897 93 0.02
898 869 0.18
899 671 0.14
900 61 0.01
901 94 0.02
902 292 0.06
903 192 0.04
904 1 0.00
905 80 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
Found at i:576858 original size:26 final size:26
Alignment explanation
Indices: 576828--576880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
576818 GTTGACTTAG
* *
576828 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
576854 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
576880 G
1 G
576881 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:579530 original size:26 final size:26
Alignment explanation
Indices: 579494--579546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
579484 GTTGACTTAG
579494 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
579520 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
579546 G
1 G
579547 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:583645 original size:26 final size:26
Alignment explanation
Indices: 583609--583661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
583599 GTTGACTTAG
* *
583609 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
583635 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
583661 G
1 G
583662 ATTGCATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:585874 original size:873 final size:879
Alignment explanation
Indices: 582237--587789 Score: 6765
Period size: 856 Copynumber: 6.3 Consensus size: 879
582227 CACAAAAATA
** *
582237 TGAATTTTTTTGTGCACACCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
582302 CCTTACGAACAAATTTTAAAAAATCTCGAACCGTAAAAAATTTTAAAAATTGTGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
582367 ACGAGTCGTCTTGCCATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *** ** *
582432 ATGAAAATGGCATTGGCACAAAGAAATATGAAGATGTGGTTAAACCCACCTACCACCCTATTGAT
196 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
582497 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCTGCCCGCCCGTTCATT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG--C--TCATT
* * * *
582562 TCGTCGGTTGGCTTAGGTATACGGAGTTCATACCTAGTCTAAGATCAGACCAGACCGAGGGTTGC
322 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
* * * * * * *
582627 GGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACTGATCCCCGACTTGTGCATTCCGCCCCT
387 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
582692 CTGGCCGACTGAGTGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-
452 CTGGCCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
582756 GTCTAAG-AT-TGA--A-CCAGACCG---AGGGTTACGACAGCACATGCTAGGCTCGGGCATGTG
517 GTCTAAGCATACGAGTATCCGGACCGACCAAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * *** * *
582813 CTGGTGCCTCATTTTTCTTCGTCGGTGCACCATCATTGGAGCATCGCCCGAGAACCTGACCGACG
582 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACAGACG
* * *
582878 GCATTGGGGTTTCGATGATCGAGGGGGCCGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTG
646 GCATTGGGGTTTCGACGATCG-GGGGGCTGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTG
* *
582943 GTAGTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
709 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
583008 AGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
774 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
*
583073 TACAAATGGTCACAAAATCTTGTACACTTC-ACGTTTTTAGC
839 TTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGC
* * *
583114 TGAATTTTTTTATGCATCCCAA-AAAAACTACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAC
1 TGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** ** * * *
583178 TCCTTCCGAAAAAATTTT-AAAAATCTTGAACCACAAAAAGTTTCAAAAATTGTGAAGAATAAAA
65 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
583242 AAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
130 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
583307 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCAATCGA
195 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
583372 TCCACAGCCTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACACCCGCCCGCTCGTTTCG
260 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCG
* * * *
583437 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCTGACCAAACTGAGGGTTACAGC
325 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGC
* * * ** * ** *
583502 GGCAGCATCGGCAGCCCGCAGAGTAGGACTCGACCGATCATCGGCTTGCGCATCCCGCCCTTCTG
390 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
583567 GCCGACTGAGCGCCCGCACGATCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTC
455 GCCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
583632 TAAGCATACGGAGTTCATTCCCAGCCTAAGATTGCATCGAACCGAGGGTTGCGGCAGCACATGCT
520 TAAGCATAC-GAG-T-A-T-CC-G-----GA---C--CG-ACC-AAGGTTGCGACAGCACATGCT
583697 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGG
567 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T-----C---GCCGG
* * *
583762 AGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGGCAATCGGGGCGGCTGGGGGGTGTG
621 AGCATCGC-GGAGAACCTGACAGACGGCATTGGGGTTTCGACGATCGGGG-GGCTGGGGGGTGTG
* * * * ** *
583827 TGCAAATGATGTGCGAT-GGTGCTGGTACTTAGCCCTTATATTGGCCCCCTAACTGTCATCAATC
684 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
583891 CTCAAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTACCAATAGCCATTA
749 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
583956 AAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
814 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
584021 C
879 C
* *
584022 TGAATGTTTTTGTGCATGCCAACAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
584087 CGTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
584151 AGCAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
131 A-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
584216 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCAACCACCCTATCAA
195 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
584281 TCCACGGCTTGTGCATCCCGTCTTTCTGGCCGGTGTAGCGCCCGCACGCCCGCCCGCTCATTTCC
260 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCG
* * *
584346 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCAGACCGAGGGTTACGGC
325 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGC
* * * * ** * ***
584411 AGCAGGATCGGTAGCACGCAGAGTGGGTCCCGACCAATCGTCGGCTTGCGCAT-CCTCTTTTCAT
390 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-T
** * * * * * * *** * * *
584475 GGGTTGACTTAG-G-CAGATAG--AG-TTCATTCCTAGTC-TAAGCATACGGAGTTCATTCCCAG
454 -GGCCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
584534 TCTAAG-AT-CG-G-A-CTGGACCGA-C--GATTGTGTCAGCACACGCTAGGCTCGGGCATGTGC
518 TCTAAGCATACGAGTATCCGGACCGACCAAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
584591 TGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---G---C-CGGAGAACCTGACCA-ACGG
583 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGA-CAGACGG
** * * * *
584645 CATTGACGTTTCGTCGGTCGGGGGG-TCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
647 CATTGGGGTTTCGACGATCGGGGGGCT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
584709 ACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
711 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
584774 CATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATTAAAATGTCTGAAATGGGGACATTTTTTT
776 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
*
584839 CAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGC
841 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * *
584878 TGAATTTTTTTGTGCATGTCAACAAAAATACAAGTATCACATCTACCAACTTTGGGGCTAAAAGT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
584943 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
585008 ACGAGTCGTCTTGCCATGAAACTTCTCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
585073 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
585138 CCACGGCTTACGCATCCCGTCTCTCTGGCCAGCATAGTACCCACCCGCCTGCCCGCTCATTTTGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGT
* * ** * * * *
585203 CAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGTGTTTCAGCA
326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCA
* * * * *
585268 ACAAGATCGACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTCCGCCCCTCTGG
391 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
585333 CCGGCTGAGCGCCCGCTCGCTTGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
456 CCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
585398 AAG-AT-C-AG-A-CCGGACC-A-C-AGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGG
521 AAGCATACGAGTATCCGGACCGACCAAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
585455 TGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGAAAGGCGGCAT
586 TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACAGACGGCAT
* * * *
585520 TGGGGTTCCGACGATCGGAGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACC
650 TGGGGTTTCGACGATCGG-GGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
585585 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCAT
714 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* ** * *
585650 TTGATATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATATTTTTTTCAA
779 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * *
585715 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTCGT
844 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
585751 TGAATTTTTTTGTGCATGCTGAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
1 TGAATTTTTTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** *
585815 TCCTTCCGACAAAATTTTAAAAAATCCTGAACCCCAAAAAGCTTT-GAAAATCGTGAAAAATAGA
65 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGA
* * *
585879 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTTTATAAATTTACAAG
129 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * *
585944 CCATAAAAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCG
194 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
586009 ATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCACG
259 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCTGCCCGCTCA
* * * *
586074 TTTCGTCGGTTGGCTTATGCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTT
320 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * *
586139 GCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCTCAGCTTGCG-ATCCCACCC
385 ACAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
*
586203 CTCTGGCCGACTGAGCGCCCAG-TACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
450 CTCTGGCCGACTGAGCGCCC-GCT-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
586267 CCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCAGAGGTTGCAACAGC
513 CCCAGTCTAAGCATAC-GAG-----T---A-TC------CGGACC-GACCA-AGGTTGCGACAGC
* ** ** * * *
586332 ACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGCCACCATCGTCGGAGAA
560 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
** * * * *
586397 TCGACGGAGAACCTGATTGACGGCATTGGGGTTTCGGCGATCGGGGGGCTGGGGCGTGTGTGTAC
625 TCG-CGGAGAACCTGACAGACGGCATTGGGGTTTCGACGATCGGGGGGCTGGGGGGTGTGCGCAC
** *
586462 ATGATGTGCGATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
689 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
586527 GAACTCACACCCTCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTC
754 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
586592 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAGC
819 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
586653 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
586718 CATTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
586783 ACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAGGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
586848 ATGAAAATGGCATTGGCACGTAGAAAAATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGAT
196 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
586912 CCACGGTTTGTGCATCCCGTCTCTCT-ACCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCTGCCCGCTCATT
* * * * * * * **
586976 TTGTCGGTTGACTTAGGCATATGGTGTTCATTCCTAGTCTAAGATCAGACCAGATCGAAGGTTGT
322 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
** * * * * * *
587041 AGCAGCAGGATCAACAGCATGCAGAGGAGGACCTGGCCGATCCCCGACTTGCGCATCCCACCCCT
387 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
587106 CTAGCCCG-TTGAGTGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
452 CT-GGCCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
587170 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGTTTTCGACAGCAGA
516 AGTCTAAGCATAC-GAG-T-A-T-CC-G-----GA-C----C-GACCAAGG-TTGCGACAGCACA
*
587235 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCG
563 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * * * *
587300 TTGGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACAT
628 -CGGAGAACCTGACAGACGGCATTGGGGTTTCGACGATC-GGGGGGCTGGGGGGTGTGCGCACAT
587365 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAG
691 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAG
*
587429 AACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
755 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
587494 CTAAAATGGGAACACTTTTTTCAAATTGTCACAAAATATTGTACACTTCGACTTTTTAGC
820 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
587554 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
587619 CCTTCCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAATTAGAA
66 CCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
587684 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
130 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
587749 CATAAAAATCGCATTCGCATGCAGAAATATGAAGATGTGCC
195 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
587790 ATCACATGAC
Statistics
Matches: 4043, Mismatches: 504, Indels: 233
0.85 0.11 0.05
Matches are distributed among these distances:
854 1 0.00
855 32 0.01
856 585 0.14
857 15 0.00
858 1 0.00
859 1 0.00
860 10 0.00
861 101 0.02
864 2 0.00
867 1 0.00
870 1 0.00
871 1 0.00
872 199 0.05
873 462 0.11
874 8 0.00
875 1 0.00
876 239 0.06
877 234 0.06
878 63 0.02
879 1 0.00
880 1 0.00
881 3 0.00
882 1 0.00
883 4 0.00
885 1 0.00
888 2 0.00
889 3 0.00
890 2 0.00
892 2 0.00
893 1 0.00
894 7 0.00
895 3 0.00
896 3 0.00
897 1 0.00
898 6 0.00
899 66 0.02
900 292 0.07
901 324 0.08
902 567 0.14
903 106 0.03
904 28 0.01
905 6 0.00
906 1 0.00
907 1 0.00
908 245 0.06
909 350 0.09
910 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (879 bp):
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCA
GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGAGTATCCGGACCGACCAAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACAGACGGCATT
GGGGTTTCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
Found at i:586280 original size:26 final size:26
Alignment explanation
Indices: 586251--586303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
586241 GTTGACTTAG
586251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
586277 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
586303 G
1 G
586304 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:586736 original size:902 final size:895
Alignment explanation
Indices: 585374--587789 Score: 3476
Period size: 902 Copynumber: 2.7 Consensus size: 895
585364 GTTGACTTAG
* *
585374 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCACAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGTTGCGACAGCACATGCTGGG
* * * *
585439 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
585504 ACCTGAAAGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGAGGTGTGCGCACATGATGTGC
129 ACCTGAATGGCGGCATTGGGGTTCCGACGATCGG-GGGGCTGGG-GGTGTGCGCACATGATGTGC
*
585569 GATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * **
585634 CCCCCTTAAAGGGCATTTGATATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
257 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * * *
585699 GGGATATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTC-GTTGAATTTTTTTG
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTCAGCTGAATTTTTTTG
* * * *
585763 TGCATGCTGAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGACAA
386 TGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAA
* ** *
585827 AATTTTAAAAAATCCTGAACCCCAAAAAGCTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
585892 TGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTTTATAAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
585957 ATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
579 ATTGGCAC-CTGAAATATGAAGATGTGCCTAAACCCACCAACCA-CCTATCGATCCACGGCTTGC
* * ** *
586022 GCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCACGTTTCGTCGGTTGG
642 GCATCCCGTCTCTCT-ACCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCACGTTTCGTCGGTTGA
* * * *
586087 CTTATGCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCAGTAGCAGGAT
706 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGAT
*** * * *
586152 CGGTAGCACGCAGAGGGGGACCCGATCGATCCTCAG-CTTGCG-ATCCCACCCCTCT-GGCCGAC
771 CAACAGCACGCAGAGGAGGACCCGACCGATCC-CAGACTTGCGCATCCCACCCCTCTAGCCCG-C
* *
586214 TGAGCGCCCAGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 TGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
586277 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCAGAGGTTGCAACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGTTGCGACAGCACATGCTGGG
** * * *
586342 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGCCACCATCGTCGGAGAATCGACGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG-CACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
586407 ACCTGATTGACGGCATTGGGGTTTCGGCGATCGGGGGGCTGGGGCGTGTGTGTACATGATGTGCG
129 ACCTGAATGGCGGCATTGGGGTTCCGACGATCGGGGGGCTGGGG-GTGTGCGCACATGATGTGCG
** *
586472 ATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
586537 CCTCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTCTCTAAAATGG
258 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
586602 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTG
* * *
586667 CATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCATTCTGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAAT
*
586732 TTTAAAAAATCCCAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACCGTAAAAAGTTTG-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
586797 CATGAAACTTCACGTGATGGCTTAGGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
586862 GGCACGTAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGTTTGTGCAT
582 GGCACCT-GAAATATGAAGATGTGCCTAAACCCACCAACCACCTATCGATCCACGGCTTGCGCAT
* *
586927 CCCGTCTCTCTACCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTTGTCGGTTGACTTAG
646 CCCGTCTCTCTACCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCACGTTTCGTCGGTTGACTTAG
** * * * * *
586992 GCATATGGTGTTCATTCCTAGTCTAAGATCAGACCAGATCGAAGGTTGTAGCAGCAGGATCAACA
711 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGATCAACA
* * * * * *
587057 GCATGCAGAGGAGGACCTGGCCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCCGTTGAGTGC
776 GCACGCAGAGGAGGACCCGACCGATCCCAGACTTGCGCATCCCACCCCTCTAGCCCGCTGAGCGC
* *
587122 CCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
587177 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGTTTTCGACAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG-TTGCGACAGCACATGCTGGG
* * *
587242 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTTGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
587307 ACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
129 ACCTGAATGGCGGCATTGGGGTTCCGACGATC-GGGGGGCT-GGGGGTGTGCGCACATGATGTGC
587372 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCAC
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
587436 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
256 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * * *
587501 GGGAACACTTTTTTCAAATTGTCACAAAATATTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTG
* *
587566 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAGAAAA
* *
587631 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAATTAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
587696 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
587761 ATTCGCATGCAGAAATATGAAGATGTGCC
579 ATTGGCA-CCTGAAATATGAAGATGTGCC
587790 ATCACATGAC
Statistics
Matches: 1346, Mismatches: 150, Indels: 35
0.88 0.10 0.02
Matches are distributed among these distances:
899 5 0.00
900 307 0.23
901 329 0.24
902 567 0.42
903 138 0.10
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGAATGGCGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CCTGAAATATGAAGATGTGCCTAAACCCACCAACCACCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTACCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCACGTTTCGTCGGTTGACTTAGGCATA
CAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGATCAACAGCACG
CAGAGGAGGACCCGACCGATCCCAGACTTGCGCATCCCACCCCTCTAGCCCGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:587187 original size:26 final size:26
Alignment explanation
Indices: 587151--587203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
587141 GTTGACTTAG
* *
587151 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
587177 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
587203 G
1 G
587204 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:588602 original size:25 final size:26
Alignment explanation
Indices: 588565--588616 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
588555 GTTGACTTAG
*
588565 GCATATAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
588590 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
588616 G
1 G
588617 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:589783 original size:876 final size:874
Alignment explanation
Indices: 588590--593855 Score: 6524
Period size: 876 Copynumber: 6.0 Consensus size: 874
588580 TCCAGTCTAA
* * * * *
588590 GCATACAGTGTTCATTCCCAGTCTAAGATC-AAACTGGA-CTGAGGGTTGCAGCAGCACATGCTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATC-GGATC-CACGGTTGCGGCAGCACATGCTG
* * ** ** * *
588653 GGCTCGGGCATGTGCTCGTGC--CATTTTTTTTCTTCGTCAAGGCAGCATCGTCGGAGCATCGTA
64 GGCTC-GGCAAGTGCTGGTGCTGCA---TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-C
* * *
588716 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGATGTGCGCACA
124 CGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCC-GGGGGGG-TGTGCGCACA
* **
588781 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CACCTTGTCCCTTGTCAAACCTCGA
186 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACC-TATCCCTCATCAAACCTCGA
*
588845 GAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
250 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
588910 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
315 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
* *
588975 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCCTT
380 T-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
589040 CCGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
444 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
* *
589105 GTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAA
509 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
589170 AAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
574 AAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
589235 GGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCACCCACCCGCCCGCCCGCTCATTTCGT
639 GGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGT
* * **
589300 CGGTTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTACAATA
704 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTA
* * *
589364 GCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCTCGCCCCTCTGG
769 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
589429 CCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
834 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
589470 GCATACAGAGTTCATTCCCAGTCTGAGATCGAATCGGATCCACGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCCACGGTTGCGGCAGCACATGCTGGG
* *
589535 CTCAGGCAAGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGTCCGAGA
66 CTC-GGCAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CCGAGA
* * *
589600 ACCTGACTGGCGGCATTGAGGTTCCGACGATCGGAGTGGCCAGGGGGG-GTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGAGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
589664 CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
589729 ACCCCCTTAAAGAGCATTTGGGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTCT-TCGAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
* * * *
589793 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTGGCTGAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TTTTT
* *
589858 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
589923 AATTTTAAAAAATCTCGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
589988 TGTCACGAAACTTCACATGAAGGCTTCAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
590053 ATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
590118 GCATCCCATCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCCCGCCCGCTCATTTCATCGGTTGG
646 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
590183 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACTGGGGGTTGCTGTAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGAT
* * * * *
590247 CTACAGCACGCAGAGGGAGACCCGATCGATCCCCGGCTTGCGCA-CTCGCCCCTCTGGCCGACTG
776 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
590311 AGCGCCCGTATGCTCGTTCCGTGGGTTGACTTAG
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
590345 GCATACGGAGTTCATTCCCAGTCTGAGATCGGATCGGATCCACGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCCACGGTTGCGGCAGCACATGCTGGG
* *
590410 CTTGGACAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGG-CAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-CCGAGA
* * *
590475 ACCTGACCGGCGGCATTGGAGATT-CGACGATCCGGGGGGCCGGGGGGG-GCGCGCACATGTTGT
129 ACCTGACCGGCGGCATT-GAGGTTCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
590538 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAATCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
**
590603 CACCCCCTTAAAGAGCATTTGAGATTTTACACATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
590668 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT-TTTT
* *
590733 -TACGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
590797 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCGA-GAAAAAGAGAAAACGAGTCGTC
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATC-ATGAAAAATAGAAAACGAGTCGTC
*
590861 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
590926 CATTGGCA-TGTAGAAATATTAAGACGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTT
580 CATTGGCACACT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * ** * * *
590990 GCGCATCCTGTCTCTCTGGCCGATGTAGTGCCCACCCGTCCACCCGCTTGCTCGCTTGTTTCGTT
644 GCGCATCCCGTCTCTCTAGCCGGCGTAGTG----CCCGCCCACCCGCCCGCCCGCTCGTTTCGTC
* * * * ** **
591055 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGGCTGAACCAAGGGTTATGGTAG
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAG
* * * * *
591120 AAGGATCTG-GAGCACGTAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCG-CCCTCTGG
770 CAGGATC-GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
591183 CCGGCTGAGCGGCCGCATGCTCGTTTCGTGGGTTGACTTTG
834 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
591224 GCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGAA
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-GA----A-T--C-G-----GAT----CC---A
* * *
591289 CGAGGGCTT-TGGCAGCACATG-TGGGCTCGGGAATGTGCTGGTGGTGCATTTTTCTTCACCGGG
43 C---GG-TTGCGGCAGCACATGCTGGGCTCGGCAA-GTGCTGGTGCTGCATTTTTCTTCACCGGG
* * * * * *
591352 GCACCATCGCCGAAGCTTCGCCGGAGAACCTGCCCGGTGGAATTTG-GGTTCCGACGATCGGGGG
103 GCACCATCGTCGGAGCATCGCC-GAGAACCTGACCGGCGGCA-TTGAGGTTCCGACGATC-GGGG
* *
591416 GTGCGGGGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCC
165 G-GCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
* * *
591481 -CCTATCCCTCATCAAACCTCAAGAACTCACAGCCCCTTAAACAGCATTTGAGATTTTACAGGTT
227 ACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
591545 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
292 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
591610 TACACTTC-ATGTTTTTAGCTCAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTA
357 TACACTTCGA-GTTTTTAGCT-AAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * *
591674 CCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTTG
420 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCG
* *
591739 AAAATCATGAAAAATAGAAAACGAGACGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACC
485 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
591804 ATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
550 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAAC
* * * * *
591869 CCACCTACCACCCTACCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGTC
615 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCC
* * * * *
591934 CGCCCGCCCGCTCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGAT
680 CACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
591999 CGGGCCAGACTGAGGGTTGCGGCAGCAGGATC-AGCAGCACACAGAGGGGGA-CCTAGTCGATCC
745 CAGACCGGACTGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-CCGATCC
* ** * *
592062 CCGGCTTGCGCATCCTGCCCCTCTGGCTAGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTT
808 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
592127 AG
873 AG
*
592129 GCATACAGAGTTTATTCCCAGTCTAAGCATACGTAGTTCTTTCCTAGTATAAAATCGGA-CCGAA
1 GCATACAGAGTTCATTCCCAGTCT----A-A-G-A------T-C--G-----AATCGGATCC--A
* * ** * *
592193 CCGAGGGTTGC-ACTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCGCCGG
43 -C---GGTTGCGGC-AGCACATGCTGGGCTCG-GCAAGTGCTGGTGCTGCATTTTTCTTCACCGG
** * * *
592257 GGCACCATCACCTGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG
102 GGCACCATCGTCGGAGCATCGCC-GAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGG
* * *
592322 GCCGGGGGGGTGTGCGCACAAGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
166 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCT
* * *
592387 ATCCCTCATCAAACCCCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
231 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
592452 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACA
296 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
592517 CTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
361 CTTCGAGTTTTTAGCTAAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ** * * *
592582 TTTGGGACCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTTGAAACACAAAAAGTTTTGAAAAT
425 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAT
* * *
592647 CGTGAAAAATAGAAAACGAGTCATCTTGCCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACC
490 CATGAAAAATAGAAAACGAG---TC--GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
592712 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGATGATGTGCCTAAA
550 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACT-GAAATATGAAGATGTGCCTAAA
* * * * * * * *
592776 CCCACCTATCAGCCTACCGATCCATGGCTTGTGCATCCCGTCTCTCTAACTGACGTAGTGCCCGC
614 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGC
* * * *
592841 CCTCCCGCCCACCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
679 CCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
592906 TCGGACTGAACTGAGGGTTGTGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCC
744 TCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
*
592971 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTA
809 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
593036 G
874 G
* * * * ** *
593037 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGATAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCCACGGTTGCGGCAGCACATGCTGGG
** * *
593102 CTCGGACATTTGCTGGTGCTGCATTTTTCTTCATCAGGGCACCA---TC---GC--CG--GAGAA
66 CTCGG-CAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAGAA
*** *
593157 CCTGACCAAAGGCATT-AGGGTTCCGGCGATCGGGGGGCCGGGGGTGGTGTGCGCACATGATGTG
130 CCTGACCGGCGGCATTGA-GGTTCCGACGATCGGGGGGCCGGGGG-GGTGTGCGCACATGATGTG
* * *
593221 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCAACAAACCACGAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCACCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
593286 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTTTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
593351 TGGTGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGCA-TTTTTAGATGAAATTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCT-AAATTTTT
* * * **
593415 TGTGCACGCCAACAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
593480 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * * *
593545 TTGCCTTGAAACTTAACATGAAGGCTTAAGGGAGCATTGTATAAATTTACACGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * **
593610 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATAGCTTG
580 CATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
593675 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCTG-----CCG---ATCCGCTCGTTTCATCGGTTG
645 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * ** **
593732 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGA-GGTTGCGACAATAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
** *
593796 TCGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
775 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
593856 TTAGGCATAC
Statistics
Matches: 3866, Mismatches: 410, Indels: 241
0.86 0.09 0.05
Matches are distributed among these distances:
859 66 0.02
860 63 0.02
863 3 0.00
868 141 0.04
870 2 0.00
871 42 0.01
872 49 0.01
873 252 0.07
874 264 0.07
875 400 0.10
876 610 0.16
877 4 0.00
878 58 0.02
879 205 0.05
880 73 0.02
881 6 0.00
882 57 0.01
883 1 0.00
886 2 0.00
887 6 0.00
889 1 0.00
890 1 0.00
892 1 0.00
894 1 0.00
895 4 0.00
899 2 0.00
901 1 0.00
902 8 0.00
903 316 0.08
904 219 0.06
905 113 0.03
906 84 0.02
907 191 0.05
908 605 0.16
909 2 0.00
910 3 0.00
911 2 0.00
915 1 0.00
916 1 0.00
917 2 0.00
918 2 0.00
919 1 0.00
923 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCCACGGTTGCGGCAGCACATGCTGGG
CTCGGCAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAGAAC
CTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:591262 original size:26 final size:26
Alignment explanation
Indices: 591226--591277 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
591216 TGACTTTGGC
591226 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
* *
591252 ATACGGAGTTCATTCCCAGTTTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
591278 TCGAACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:592580 original size:903 final size:894
Alignment explanation
Indices: 590395--593855 Score: 4439
Period size: 908 Copynumber: 3.9 Consensus size: 894
590385 CACGGTTGTG
* * * *
590395 GCAGCACATGCTGGGCTTGGACAAGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCG
1 GCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATC-ACC
* *
590460 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGAGATT-CGACGATCCGGGGGGCCGGGGGGG-
65 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGG-GGTTCCGACGAT-CGGGGGGCCGGGGGGGT
* * *
590523 GCGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCA
128 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * **
590588 AATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACATTTGCTGCCAGTAGCCA
193 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
590653 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTAGAGTTTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
590718 TAGCTGAATTGTTTT-TACGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
323 TAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
590782 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCGA-GAAAAAG
387 AACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACA-CAAAAAGTTTTGAAAATC-ATGAAAAAT
*
590846 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
450 AGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * *
590911 AAGCCGTAAAAATGGCATTGGCATGTAGAAATATTAAGACGTGCCTAAAACCACCTACCACCCTA
515 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * **
590976 TCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGATGTAGTGCCCACCCGTCCACCCGCTTGC
580 CCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGTCCGCCCGCCCGC
* * *
591041 TCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGG-CTGAAC
641 TCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCTGAAC
** ** * * * * * *
591105 CAAGGGTTATGGTAGAAGGATCTGG-AGCACGTAGAGGGGGACCCAACCGATCCCCGACTTGCGC
706 TGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGAGGGGGACCTAGCCGATCCCCGGCTTGCGC
* * *
591169 ATCCCG-CCCTCTGGCCGGCTGAGCGGCCGCATGCTCGTTTCGTGGGTTGACTTTGGCATACAGA
770 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* *
591233 GTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGAACGAGGGCTT
835 GTT-ATTCCCAGTCTAAG-ATAC-GAGTTC-TT-CCAGTATAAGATCGGACC-GAACGAGGG--T
591298 TG-
892 TGC
* *
591300 GCAGCACATG-TGGGCTCGGGA-ATGTGCTGGTGGTGCATTTTTCTTCACCGGGGCACCATCGCC
1 GCAGCACATGCTGGGCTC-GGACATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACC
* * * * * *
591363 GAAGCTTCGCCGGAGAACCTGCCCGGTGGAATTTGGGTTCCGACGATCGGGGGGTGCGGGGGGGT
65 G-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG-GCCGGGGGG-
* *
591428 GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCAT
126 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
591493 CAAACCTCAAGAACTCACAGCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
191 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
591558 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-ATGT
256 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GT
* * * *
591622 TTTTAGCTCAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGT
320 TTTTAGCT-GAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
591687 GAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTTGAAAATCATGAAAA
384 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACA-CAAAAAGTTTTGAAAATCATGAAAA
* *
591752 ATAGAAAACGAGACGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATAT
448 ATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
591817 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
513 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
591882 TACCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGTCCGCCCGCCCGCT
578 TACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGTCCGCCCGCCCGCT
* * *
591946 CGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGGCCAG-ACT
642 CGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCTGAACT
* * *
592010 GAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGGACCTAGTCGATCCCCGGCTTGCGCAT
707 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCAT
* ** * *
592075 CCTGCCCCTCTGGCTAGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGT
772 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG-
*
592140 TTATTCCCAGTCTAAGCATACGTAGTTCTTTCCTAGTATAAAATCGGACCGAACCGAGGGTTGC
836 TTATTCCCAGTCTAAG-ATACG-AGTTC-TTCC-AGTATAAGATCGGACCGAA-CGAGGGTTGC
* ** * *
592204 ACTAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCACAGTTTTCTTCGCCGGGGCACCATCAC
1 GC-AGCACATGCTGGGCTCGGA-CATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCAC
*
592268 CTGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGT
64 C-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGT
* *
592333 GTGCGCACAAGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
128 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
592398 AACCCCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCA
193 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
592463 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
592528 TAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAA
323 TAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** *
592593 AATTCCTTCCGAAAAAATTTTAAAAAATCTTGAAACACAAAAAGTTTTGAAAATCGTGAAAAATA
387 AACTCCTTCCGAAAAAATTTTAAAAAATC-CCAAACACAAAAAGTTTTGAAAATCATGAAAAATA
* *
592658 GAAAACGAGTCATCTTGCCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
451 GAAAACGAG--A-C--GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * * *
592723 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGATGATGTGCCTAAACCCACCTATCAG
511 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * ** * * * *
592788 CCTACCGATCCATGGCTTGTGCATCCCGTCTCTCTAACTGACGTAGTGCCCGCCCTCCCGCCCAC
576 CCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGC
* * *
592853 CCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACTGAAC
641 TCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCTGAAC
* * * *
592917 TGAGGGTTGTGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCA
706 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCA
*
592982 TCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G
771 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
593045 --------AG--T----T-C-A-TTC--CCAGTATAAGATCGGACCGGATA-GAGGGTTGC
836 TTATTCCCAGTCTAAGATACGAGTTCTTCCAGTATAAGATCGGACC-GA-ACGAGGGTTGC
* * *
593086 GGCAGCACATGCTGGGCTCGGACATTTGCTGGTGCTGCATTTTTCTTCATCAGGG------CA-C
1 -GCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACC
*** * *
593144 ---CATCGCCGGAGAACCTGACCAAAGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGTGGTG
65 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GGTG
*
593206 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCAACA
129 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCA
* * * * *
593271 AACCACGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAA
193 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
593336 TTAAAGTTTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGCA-TTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTT
* * * *
593400 TTAGATGAAATTTTTTGTGCACGCCAACAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCA
322 TTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * * **
593465 AAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAAT
386 AAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AAACACAAAAAGTTTTGAAAATCATGAAAAAT
* * * * * *
593530 AGAAAACGAGTCGTCTTGCCTTGAAACTTAACATGAAGGCTTAAGGGAGCATTGTATAAATTTAC
450 AGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
593595 ACGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
515 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * ** * * **
593660 TCGATCTATAGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTG-CC-T--G-CCG--ATC-CGC
580 CCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCTCGC
* * * * *
593717 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACTGGACTGA-
645 TCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCTGAACTGAG
* ** * * *
593780 GGTTGCGACAATAGGATCGGTAGCACGCAGAAGGGGACC-CGACCGATCCCCGGCTTGCGCATCC
710 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTAG-CCGATCCCCGGCTTGCGCATCC
593844 CGCCCCTCTGGC
774 CGCCCCTCTGGC
593856 TTAGGCATAC
Statistics
Matches: 2273, Mismatches: 237, Indels: 138
0.86 0.09 0.05
Matches are distributed among these distances:
858 1 0.00
859 65 0.03
860 61 0.03
861 1 0.00
863 3 0.00
867 2 0.00
868 139 0.06
870 1 0.00
871 51 0.02
872 49 0.02
873 251 0.11
874 4 0.00
875 1 0.00
876 2 0.00
882 66 0.03
883 7 0.00
884 1 0.00
886 3 0.00
887 1 0.00
889 1 0.00
890 1 0.00
895 1 0.00
897 2 0.00
902 3 0.00
903 315 0.14
904 228 0.10
905 133 0.06
906 89 0.04
907 197 0.09
908 593 0.26
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCG
AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCAAACACAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
CGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCTCGCTCGTTT
CGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCTGAACTGAGGGTTGC
GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTATTCCCAG
TCTAAGATACGAGTTCTTCCAGTATAAGATCGGACCGAACGAGGGTTGC
Found at i:596189 original size:884 final size:892
Alignment explanation
Indices: 593860--600676 Score: 8512
Period size: 896 Copynumber: 7.7 Consensus size: 892
593850 TCTGGCTTAG
* * * * * *
593860 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCT-GG
* * *
593925 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
65 GTC-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * * * *
593990 ACCTGACCAGCTGCATTAGGGTTCCGGCGATCGGGGGGCC-GGGGGGTG-G-GCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
594052 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATAAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
594117 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
594182 GCGACACCTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
594247 GCATGCCAACAAAAATACAAGGATCACGACTACAAAGTTTGGCGACAAAAATCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* ** ** *
594312 TTTTAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
594377 CCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACATGCCATAAAAATGGTAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * **
594442 TGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCCATCGATCCATAGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
594507 ATCCCGTCTCTATAGCCGACGTAGTGCCCG--C-CCGTCCGCTCGTTTCGTCGGCTT-GCTTTGG
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTC-GATTGGCTTAGG
* * * * * * * *
594568 CATACGCAGTTCATTTCGAGTCTAAGATTGGACGAGACCTAGGGTTGTGCCAGCAGGA-CCAGCA
713 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCAGGATCGA-CA
** * * * * * *
594632 GCATGCAAAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCGCCCCTCTAGCGGCTGAGCGCC
776 GCACACAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCCCTCT-G-GCCTGAGCGCC
* * *
594697 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCAAA
839 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
594751 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACTA-AGGGTTGCGGCAGCACATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC-AGAGGGTTGTGGCAGCACATGCTGG
* * *
594814 GT--GC-----C--GT-T----TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
65 GTCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* *
594865 CCTGACCGACGGCATTGGGGTTTCGGCGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
594929 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
594994 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * * * * *
595059 GGGTTAC-TTTTTCAAACGGTCACAAAATCTTGCACACTTCAAATTTTTAGCTTAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * * * *
595123 GCATGCCAAAAAAAATACAACAATCATGTTTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * *
595188 TTTTAAAAACTC-CTGAACCGAAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
595252 GCCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
595317 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
595382 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGGCCCGTCCGCCTGGTCATTTCATCGATTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * ** *
595447 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACATAGTAGGATCGACAG
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCAGGATCGACAG
* * *
595512 CACACAGAGGGGGACCCGACTGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCTTAGCGCGCGC
777 CACACAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCTGAGCGCCCGC
* *
595577 ACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATT-CCATTCTAA
842 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
595627 GCATACGGACTTCTTTCCCAGTCTAA-ATCGAACCAGAC-GAGGGTTGTGGTAGCACATGC-GGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCTGGG
* * ** * *
595689 TC-GCATGTGCCGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCTGCCCATTGCCAGAAAAC
66 TCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAAC
* * * *
595753 CTGACAGGCGGTATTGGGGTTTCGACGATCGGGGGGTC-GGGGGGTGTGCGCACGTGATGTGCGA
131 CTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
595817 TGGGTGCTGGTAC-TAGCCCTTGTA-TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
595878 CCCTTAAAGAGCATTTGAGATTTT-CAGGTTTGCTGCCAGTAAACCATTAAAGTGTCTGAAATGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGG
* * * *
595942 GGACACTTTTTTCAAATCGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTTAT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGT
* * **
596007 GCATACCAACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCC-AAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
** * ** * *
596071 TTTTAAAAAAATCTCGAATTGCAAAAAATTTCAAAAATCACAAAAAATAAAAAACGAGTCATCTT
454 TTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
596136 GCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
596201 TTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
596266 CATCCCGTCTCTCTGGCCTG-CGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGACTGGCTTA
648 CATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTCGATTGGCTTA
* * *
596330 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC-ATGGGTTACAGCAGCAGGATCGG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGC-GCAGCAGGATCGA
* * * * * * * * * *
596394 TAGCACACAGAAGGGGACCCG-GTCGAT-CCTCGACTTACGCATTCCACCCCTTTAGCCGGCAGA
774 CAGCACACAGAGGGGGACCCGACT-GATCCCT-GGCTTGCGCATCCCGCCCCTCT-G--GCCTGA
* * *
596457 GTGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
834 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
596516 GCATACGTAGTTCATTCTCAGTCTAAGAT-TAGACTGGATC-GAGGGTTGT-GCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGA-CAGAGGGTTGTGGCAGCACATGCTG
* *
596578 GGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---CG-C-GA
64 GG-TC-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGA
* * *
596632 GAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGTGCC-GGGGGGTGTGTGCACATGATG
127 GAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATG
596696 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
596761 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA
* * * *
596825 AATGGGGAAACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
596890 TTGTGCGTCCCAACAAAAATACAATGATCAAGTCTACCAAATTTGGGGCCAAAAATCCTTCTGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
*
596955 AAAGTTTTAAAAAATC-CAGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATC-AGTC
450 AAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTC
* *
597017 TTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
597082 TGGCATTGGCACATATAAATATGAAGATGTGCCTAAACCCACCTGCCATCCTATCGATCCATGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
597147 TTGCGTATCCTGTCTCTATGGCCGACGTAGTGCCCG--C-CCGCCCGCTCATTTTGCCGGTTGGC
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTGGC
* * * * *
597209 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATG
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCAGGATC
** * * * * ** *
597274 GGTAGCACGCAGAGGGCGACCCGACCGATCACTGGCTTAAGCATCTCGCCCCTCTGGCCGACTGA
772 GACAGCACACAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCCCTCTGG-C--CTGA
* * *
597339 GCACCCGCACGCTCATTTCGTCGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
597398 GCGTATGGAGTTCATTCCCAATCTGAGATCGGACCGGACAGAGGTTTATGGCAGCACAAGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCTGG-
* * *
597463 CTCGGGCATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCACCATCG-CGAGAGCATCGCC-GAA
65 GTC-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCG-GAGCATCGCCAG-A
* * *
597526 GAACCTGACCGGCGGTATTGAGGTTTC-AGCGATCGGGGGGCCGGGGGGGATGCGCGCACATGAT
127 GAACCTGACCGGCGGCATTGGGGTTTCGA-CGATCGGGGGGCCGGGGGGG-TGTGCGCACATGAT
*
597590 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
597655 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * **
597720 AATGTGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTCCGAGTTTTGAAATGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
597785 TTGTCCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAACA-CCTTCCGA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGA
** * * *
597846 AAAAATTTTAAAAACCCTCGAACCGCAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCA
449 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
597911 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTAGAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
597976 GGCATTGTCATGCAGAAATATGAAGATGTGCCTACACCAACCTACCACCCTATCGATCCACGGCA
579 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
598041 TGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCGCTCGTTTCGTCAATTGGC
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTCGATTGGC
* *
598106 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCAGGATC
* * * * *
598171 GATAGCACATAGAGGGTGACCCGA-TCGATCGCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
772 GACAGCACACAGAGGGGGACCCGACT-GATCCCTGGCTTGCGCATCCCGCCCCTCTGG-C--CTG
* * * *
598235 AGCGCCCGCATGCTCATTTCGTCGGTTAACTTA-GCATACGGAGTTCATTCCCAATCTAA
833 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
598294 GCATATGGAGTTCATTCCCAATCTGAGATCGGACCGGACAGAGGTTTATGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCTGG-
* ** *
598359 CTCGGGCATGTGCTGGTGAT-GCATTTTTCTTCACCGGCGCACCATCG-CGAGAGCATCGCC-GA
65 GTC-GGCATGTGCTGGTG-TCGCATTTTTCTTCGTCGGGGCACCATCGCCG-GAGCATCGCCAG-
* * *
598421 AGAACCTGACCGGCGGTATTGAGGTTTCGACGATCGGGAGGCCGGGGGGGATGTGCGCACATGAT
126 AGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGG-TGTGCGCACATGAT
* *
598486 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
598551 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
**
598616 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
598681 TTGTGCAAGCCAACAAATATACAAGGATCACGTCT---AAGTTTAGGGCCAAAACTCCTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * *
598743 AAAATTTTAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
598808 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTAGATGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
598873 GGTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
598938 GTGCATCCCGTTTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCG--C--CCGCTCGTTTCGTCGATT
*
599003 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCAGG
* ** * * * * * *
599068 ATCGGCAGCATGCAGAGGGTGACCCG-GTCGATCCCCGGATTGCACATTCCGCCCCTCTGGCCGG
769 ATCGACAGCACACAGAGGGGGACCCGACT-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC--
* * *
599132 ATGAGCGCCCGCACGCTCATTTCATCGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
831 -TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
599195 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCTGATAGAGGTTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
599260 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCGGGAGCATCG-CAGGAG
66 -TCG-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCA-GAG
* * *
599324 AACCTGACAGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
599389 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
599454 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
599519 TGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGCGTTTTTAGATGAAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
599584 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCATTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
599649 AATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
599714 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
599779 ATTGGCACGCAGAAATATGAGGATGTGCCTAAAGCCACCTATCACCCTATCGATCCACGGCTT-C
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
599843 GCATCCTGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCACCCGCTTGTTTCGTCGGTTGTCTTA
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTA
* * * * *
599908 GGCATACGGAGATCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGAATCGAC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCAGGATCGAC
* * ** *
599973 AACACATAGAGGGGGACCCGGTTGAT-CCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
775 AGCACACAGAGGGGGACCCGACTGATCCCT-GGCTTGCGCATCCCGCCCCTCTGG-C--CTGAGC
* * * *
600037 GCCCACCCGCTCGTTTCGTGGATTGACTTAGGCATACGGAG----TT--C-GT-T--
836 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *** *
600084 -C---C------C--T----GTCTAAGATCGGACCGGACCGAGGCTTGCAACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCT-GG
* * * * * * *
600133 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 GTC-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * * * *
600198 ACCTGACCGGCTGCATTGGGGTTCCGGCGATAGGGGGTGCCAGGGGGGGTGTGCCCACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG-GCC-GGGGGGGTGTGCGCACATGATGT
*
600263 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * ** * *
600328 CATCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCGTGTAGCAATTAAAGTGTATGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
600393 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
** *
600458 TGTGCATGCCGAA-AAAAATACAA-GATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCCTAA
386 TGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
*
600521 AAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
600586 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
600651 GCATTGGCACACAGAAATATGAAGAT
580 GCATTGGCACGCAGAAATATGAAGAT
600677 CAGAGTGGAC
Statistics
Matches: 5231, Mismatches: 567, Indels: 273
0.86 0.09 0.04
Matches are distributed among these distances:
872 5 0.00
873 117 0.02
874 473 0.09
875 54 0.01
876 338 0.06
877 193 0.04
878 3 0.00
879 58 0.01
880 61 0.01
881 19 0.00
882 257 0.05
883 179 0.03
884 371 0.07
885 70 0.01
886 234 0.04
887 165 0.03
888 150 0.03
889 51 0.01
890 16 0.00
891 70 0.01
892 46 0.01
893 193 0.04
894 77 0.01
895 224 0.04
896 668 0.13
897 168 0.03
898 3 0.00
899 157 0.03
900 162 0.03
901 395 0.08
902 17 0.00
903 34 0.01
904 203 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGTGGCAGCACATGCTGGG
TCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAAC
CTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCAGGATCGACAGCACA
CAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:596527 original size:26 final size:26
Alignment explanation
Indices: 596490--596542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
596480 GTTGACTTAG
*
596490 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
596516 GCATACGTAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
596542 G
1 G
596543 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:598296 original size:26 final size:26
Alignment explanation
Indices: 598267--598317 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
598257 CGGTTAACTT
598267 AGCATACGGAGTTCATTCCCAATCTA
1 AGCATACGGAGTTCATTCCCAATCTA
*
598293 AGCATATGGAGTTCATTCCCAATCT
1 AGCATACGGAGTTCATTCCCAATCT
598318 GAGATCGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAATCTA
Found at i:598473 original size:896 final size:891
Alignment explanation
Indices: 593867--613839 Score: 14211
Period size: 900 Copynumber: 21.9 Consensus size: 891
593857 TAGGCATACA
* * *
593867 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
*
593932 ATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * *
593997 CAGCTGCATT-AGGGTTCCGGCGATCGGGGGGCCGGGGGGTG-G-GCACATGATGTGCGATGGGT
128 CGGCGGCATTGA-GGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
594059 GCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATAAAACCTCAAGAACTCACACCCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
594124 AAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATGGCGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
594189 CTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
594254 AACAAAAATACAAGGATCACGACTACAAAGTTTGGCGACAAAAATCCTTCTGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACG--T-CTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * ** ** *
594319 AAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
449 AAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
594384 ACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACATGCCATAAAAATGGTATTGGCACT
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * **
594449 TAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCCATCGATCCATAGCTTGCGCATCCCGT
579 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
594514 CTCTATAGCCGACGTAGTGCCCG--C-CCGTCCGCTCGTTTCGTCGGCTT-GCTTTGGCATACGC
644 CTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTC-GATTGGCTTAGGCATACGG
* * * * * * * **
594575 AGTTCATTTCGAGTCTAAGATTGGA-CGAGACCTAGGGTTGTGCCAGCAGGA-CCAGCAGCATGC
708 AGTTCATTCCCAGTCTAAGATCGGACCG-GACCAAGGGTTGCGGCAGCAGGATCGA-CAGCACAC
* * * * * * *
594638 AAAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCGCCCCTCTAG-CGGCTGAGCGCCCGCAC
771 AGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * * * *
594702 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCAAAGCATACG
836 GCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* *
594758 AAGTTCATTCCCAGTCTAAGATCGAACCGGACTA-AGGGTTGCGGCAGCACATGCTGG-T---GC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGAC-AGAGGGTTGCGGCAGCACATGCTGGCTCGGGC
* *
594818 -----C--GT----TTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
65 ATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGACC
* * *
594872 GACGGCATTGGGGTTTCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
129 GGCGGCATTGAGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
594937 CTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
**
595002 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTTAC-
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
595066 TTTTTCAAACGGTCACAAAATCTTGCACACTTCAAATTTTTAGCTTAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * *
595131 AAAAAAATACAACAATCATGTTTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
388 ACAAAAATACAAGGATCACGTCTA--A-GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * *
595196 ACTCCT-GAACCGAAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
450 A-ACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
595260 ACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
595325 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCCGT
579 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
595390 CTCTCTGGCCGGCGTAGTGCCGGCCCGTCCGCCTGGTCATTTCATCGATTGGCTTAGGCATACGG
644 CTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG
* * * * ** *
595455 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-ATAGTAGGATCGACAGCACACAG
708 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAG
* * *
595519 AGGGGGACCCGA-CTGATCCCTGGCTTGCACATCCCGCCCCTCTGG-C--CTTAGCGCGCGCACG
773 AGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
* * * *
595580 CTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATT-CCATTCTAAGCATACG
837 CTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * * * *
595634 GACTTCTTTCCCAGTCTAA-ATCGAACCAGAC-GAGGGTTGTGGTAGCACATGC-GGGTC--GCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGCTCGGGCA
* * ** * * * *
595694 TGTGCCGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCTGCCCATTGCCAGAAAACCTGACA
66 TGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGACC
* * * *
595759 GGCGGTATTGGGGTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCACGTGATGTGCGATGGGTGC
129 GGCGGCATTGAGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
595824 TGGTAC-TAGCCCTTGTA-TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
595885 AGAGCATTTGAGATTTT-CAGGTTTGCTGCCAGTAAACCATTAAAGTGTCTGAAATGGGGACACT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
595949 TTTTTCAAATCGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTTATGCATACC
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCC
* **
596014 AACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCC-AAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AA
* ** * ** * *
596078 AAAATCTCGAATTGCAAAAAATTTCAAAAATCACAAAAAATAAAAAACGAGTCATCTTGCCATGA
448 AAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
596143 AACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAT
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
596208 GCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
578 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
596273 TCTCTCTGGCCTG-CGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGACTGGCTTAGGCATAC
643 TCTCTCTGGCC-GACGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
* * * * * **
596337 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCATGGGTTACAGCAGCAGGATCGGTAGCACAC
706 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACAC
* * * * * * * * * * *
596402 AGAAGGGGACCCGGTCGAT-CCTCGACTTACGCATTCCACCCCTTTAGCCGGCAGAGTGCCCGCA
771 AGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * *
596466 CGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACG
835 CGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * ** * * *
596523 TAGTTCATTCTCAGTCTAAGATTAGACTGGATC-GAGGGTTG-TGCAGCACATGCTGGGCTCAGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCT-GGCTCGGG
*
596586 CATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCAT--C---G---CG-C-GAGAACCTGAC
64 CATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGAC
* *
596641 CGGCGGCATT-AGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGTGCACATGATGTGCGATGGG
128 CGGCGGCATTGA-GGTTTCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGG
596705 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
596770 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGAA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGAC
* * * * *
596834 ACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTC
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
596899 CCAACAAAAATACAATGATCAAGTCTACCAAATTTGGGGCCAAAAATCCTTCTGAAAAAGTTTTA
385 CCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* *
596964 AAAAATCC-AGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATC-AGTCTTCTTGCCA
447 AAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCA
*
597026 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGG
510 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * * * *
597091 CACATATAAATATGAAGATGTGCCTAAACCCACCTGCCATCCTATCGATCCATGGCTTGCGTATC
575 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
597156 CTGTCTCTATGGCCGACGTAGTGCCCG--C-CCGCCCGCTCATTTTGCCGGTTGGCTTAGGCATA
640 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
* * * ** *
597218 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATGGGTAGCACG
705 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * ** * *
597283 CAGAGGGCGACCCGACCGATCACTGGCTTAAGCATCTCGCCCCTCTGGCCGACTGAGCACCCGCA
770 CAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* *
597348 CGCTCATTTCGTCGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATG
835 CGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * ** *
597405 GAGTTCATTCCCAATCTGAGATCGGACCGGACAGAGGTTTATGGCAGCACAAGCTGGACTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGG-CTCGGGC
* *
597470 ATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCACCATCGCGAGAGCATCGCCGAAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCG-GAGCATCGCCGGAGAACCTGAC
* *
597535 CGGCGGTATTGAGGTTTC-AGCGATCGGGGGGCCGGGGGGGATGCGCGCACATGATGTGCGATGG
128 CGGCGGCATTGAGGTTTCGA-CGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGG
*
597599 GTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
190 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
597664 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGTGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * ** *
597729 ACTTTTTTCAAATGGTCACAAAATTTTGTACACTCCGAGTTTTGAAATGAATTTTTTTGTCCATG
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
597794 CCAACAAAAATACAAGGATCACGTCTAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAA
385 CCAACAAAAATACAAGGATCACGTCTAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAA
* * * *
597858 AACCCTCGAACCGCAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
449 AAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
597923 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTAGAAGCCATAAAAATGGCATTGTCATG
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
597988 CAGAAATATGAAGATGTGCCTACACCAACCTACCACCCTATCGATCCACGGCATGCACATCCCGT
579 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
598053 CTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACGG
644 CTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG
* *
598118 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGCACATAG
708 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAG
* * * *
598183 AGGGTGACCCGATCGATCGCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCATGC
773 AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC
* *
598248 TCATTTCGTCGGTTAACTTA-GCATACGGAGTTCATTCCCAATCTAAGCATATG
838 TCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * **
598301 GAGTTCATTCCCAATCTGAGATCGGACCGGACAGAGGTTTATGGCAGCACATGCTGGACTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGG-CTCGGGC
* ** * *
598366 ATGTGCTGGTGATGCATTTTTCTTCACCGGCGCACCATCGCGAGAGCATCGCCGAAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCG-GAGCATCGCCGGAGAACCTGAC
* * *
598431 CGGCGGTATTGAGGTTTCGACGATCGGGAGGCCGGGGGGGATGTGCGCACATGATGTGTGATGGG
128 CGGCGGCATTGAGGTTTCGACGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGG
*
598496 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
598561 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
** *
598626 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTTTTGTGCAAGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
598691 CAACAAATATACAAGGATCACGTCTAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
386 CAACAAAAATACAAGGATCACGTCTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* *
598756 ACCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
451 ACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * ** *
598821 TTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTAGATGCCATAAAAATGGGTTTGGCATGCA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
598886 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTTT
581 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
598951 CTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
646 CTCTGGCCGACGTAGTGCCCGCCCG-CCG--C--CCGCTCGTTTCGTCGATTGGCTTAGGCATAC
* * * **
599016 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCAGGATCGGCAGCATGC
706 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACAC
* * * * * *
599081 AGAGGGTGACCCGGTCGATCCCCGGATTGCACATTCCGCCCCTCTGGCCGGA-TGAGCGCCCGCA
771 AGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCA
* *
599145 CGCTCATTTCATCGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
835 CGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
599202 GAGTTCATTCCCAGTCTAAGATCGGACCTGATAGAGGTTTACGGCAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* * * *
599267 ATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCGGGAGCATCGCAGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAGAACCTGAC
* *
599332 AGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
128 CGGCGGCATTGAGGTTTCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
599397 TGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
599462 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
599527 CTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGCGTTTTTAGATGAAATTTTTTGTGCATGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
599592 CAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCATTCCGAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * *
599657 AAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
448 AAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
599722 AACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
599787 GCAGAAATATGAGGATGTGCCTAAAGCCACCTATCACCCTATCGATCCACGGCTT-CGCATCCTG
578 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
599851 TCTCTCTGGCCGACGTAGTGCACGCCCGCCCACCCGCTTGTTTCGTCGGTTGTCTTAGGCATACG
643 TCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
* * * * * * * * *
599916 GAGATCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGAATCGACAACACATA
707 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * * *
599981 GAGGGGGACCCGGTTGAT-CCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACCC
772 GAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
*
600045 GCTCGTTTCGT-GGATTGACTTAGGCATAC-G-G---------AGT-T---C-----
836 GCTCATTTCGTCGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * ** *
600081 --G----TTCCCTGTCTAAGATCGGACCGGACCGAGGCTTGCAACAGCACATTCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* * *
600140 ATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * * * *
600205 CGGCTGCATTGGGGTTCCGGCGATAGGGGGTGCCAGGGGGGGTGTGCCCACATGATGTGCGATGG
128 CGGCGGCATTGAGGTTTCGACGATCGGGGG-GCC--GGGGGGTGTGCGCACATGATGTGCGATGG
* *
600270 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACATCCCC
190 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* ** * *
600335 TTAAAGAGCATTTGAGATTTTACAGGATTGCTGCGTGTAGCAATTAAAGTGTATGAAATGGGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
600400 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCAT
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * *
600465 GCCGAA-AAAAATACAA-GATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCCTAAAAAATTT
384 GCC-AACAAAAATACAAGGAT--CACGT-CTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
* *
600528 TAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
445 TAAAAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
600593 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGG
510 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
600658 CACACAGAAATATGAAGATCAGAGTGGACTGAGGCTTACGACAGTAGGATCGACAGCACATAGAG
575 CACGCAGAAATATGAAGAT----GT-G-C-----C-T-----A--A--A-C--C--CACCT--A-
** * * * ** * * * * * * *
600723 GGGGACCCGACCGATCCCCGATTTGCACATCCCGCCCCTCTGGCCGGC-TGAGCGCCTGCACGCT
611 --CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCGC-
*** * * * ** * *
600787 CATTTCGTTTGTTGATTTAAGCATACGGAGTTCATTCCCATTCTAAGCATACAGAGTTCATTCCC
672 C-GCCCG---CTCG-TTT---CGT-C---G---ATTGGC--T-TAGGCATACGGAGTTCATTCCC
* * * ** * * * ** * *
600852 AGTCTAAGATCGGATCGGACCAAGTGTTACAACAGCA-CATGCTGGGCTCGGGCA-AGTGCTGGT
719 AGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGAT-C--GAC-AGCACACAGAG--GGG
*** ** * ** * * ** * * * * *
600915 G-CCAC-ATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACTGG-AGAACTTGACCGGCGGC
778 GACC-CGATCGATCCCTGGC-TTGC-GCATC--C--CGCCCCTCTGGCCG-AC-TGAGCGCCCGC
* * * *** ** * * * * * ****
600977 ATTTGGGTTACGACGATCGGGGGGGCCGGGGGGTGTGGGCACA-TGATGTGCGATGGGTGTTGGT
834 A---CGCTCATTTCG-TC--GGTTGAC------T-TAGGCATACGGA-GTTC-AT---TCCCAGT
**
601041 ACTTGGCCCTTATATTG
881 -CTAAG--C--ATA-TG
**** * * * * ** ***** ** *
601058 GCCCCCTATCCCTCA-TC-AAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 GAGTTC-ATTCC-CAGTCTAAGA--TCG-GACCGGACAGAGGGTT-GCG-GC-----AG----CA
* * * * * * *** *
601121 CAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAATTGGCGACACTTTT-TTCAAAGGGTCACAA
50 CATGCTGGCT--C-G-GGC-A-T---GTG-CTG--GT-GCG-CATTTTTCTTCGTCGGGGCAC--
* ** * * * * ** **** * *** *** * * *
601185 AATCTTGTAGACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
99 CATCGCGGAG-CATCGCCG------G-AGAACCTGACCG-GC--GGCATTGAGGTTTCGACGATC
* **** *** ** * * **** * ** * ****
601249 ACGTCTACCAAGTTTGG-G-GC-CA-AAAATCCTTTCGAAAAAAT-TTAAAAAAATCCCAAACCG
153 -GGGGGGCC--GGGGGGTGTGCGCACATGAT--GTGCG-ATGGGTGCT-----GGTACTTGGCC-
** * **** * **** **
601309 CAAAAAATTTTGAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGA-
206 C---TTATATTG-GCCCCCT-ATCCCTCATCAAAC----C-TC---G-A-G-AAC-TCAC---AC
*** * * * * * * *
601372 AGGCTTAAAAGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG-AAATAG
251 CCCCTT-AAAGAGCATTTG-A-GATTTTAC-AG--GT-----TTGC--TGCCA-GTAGCCATTA-
* *** ** * * * * *** *
601435 GAAGATGTGCCT-AAACGCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTCTAG
301 -AAG-TGT--CTGAAATG--GGGA-CACTTTTTTCA--AATGG--T-CACA--AAATCT-TGTA-
* ****** * * ** * * * ***
601499 CCACGTAATGCCTGCCCGCCCGCCCGCCCG-CTCGTTCTGT-CAGTTGGC-ATAGGCATACAAAG
350 -CAC-T--T--C-G--AG-TTTTTAG-CTGAATTTTTTTGTGCA--TGCCAACAAAAATAC-AAG
* * * * ** *** *** * ** ** * ** *
601561 TTCATTCCCAGTCTAAG-ATCGAACCAGCCTGAGGGTTGCGATAGTAGGA-TCGATAGCACATCG
401 --GA-TCAC-GTCTAAGTTTGGGGCCA--AAAATCCTTCCGA-A--AAAATTTTAAAAAACCTCG
*** * * * ** * ** * * *
601624 AGGGGGACCTGGCCGATCCCCGACTTGCGCACCATCATCGGACCATCGCCGGAGAACCTGA-CCG
457 A-----ACC--G-C-A---AAAAGTTTC-AAAAATCAT-GAAAAAT----AGA-AAAC-GAGTCG
* * *** ** *** * **
601688 --GTGGCATTG-GGGTTCCGACGATCGGGGGCCCTGGGGGGTGTGCGCACATGATGTGCGATGGG
502 TCTTGCCA-TGAAACTT-C-ACG-T-GAAGG--CT--TAAG-G-G-AC-CAT--TGT---ATGAA
** * * * * ** ** * * * ** * *
601750 TGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCG-AGATCT--C-ACACC
549 T--T--TAC-AAGCCATAAAAATGG--CATTGGCACGCA-GAAATAT-GAAGATGTGCCTAAACC
** * * * * ** * ** * *
601811 C-CCTTAAAGAGCATTTGAGATTTTACAGG-TT-TGCA----G-C-CAATAGCC-A-TTAAAGTG
605 CACC-T-ACCACCCTAT-CGA-TCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGACGT--AGTG
* * *** * ** * * * * * * * ** **
601865 TCTGAAATG-GGGACACT--TTT-TTCAAATTGG-TCA--CAAAATCTTGTACATTTTTTTCAAA
663 CCCG-CCCGCCGCCCGCTCGTTTCGTC-GATTGGCTTAGGC-ATA-C--G--GAGTTCATTCCCA
* * * * * * * *** * ** * *
601923 TGGTCACAAAATCTTGTA-C--ACTTCGAGGTTTTAGCTGAATTTTTTGTGCAT-GCCAAAAAAA
720 --GTC-TAAGATC--GGACCGGAC--CAAGG-GTT-GCGGCA---GCAG-G-ATCGACAGCACAC
* *** * * * *** * * **** * *
601984 ATACAAGGA-TC-AT-G-TCTACC-GAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTAAAAA
771 AGAGGGGGACCCGATCGATC--CCTG-GCTT-GCG-CATCCCGCCCCTCTG-GCCGA-CT---GA
*** * ** ** * ** * * *
602043 AATCTCTAACCGCAAAAAGTTTCAAAAATC-G-TGAAAAATA-GAAAAC-GAGTGGTC-TTGCCA
826 GCGCCCGCA-CGC--TCA-TTTC----GTCGGTTG--ACTTAGGCATACGGAGT--TCATTCCCA
* * *
602103 --CGAAACTTCATG
879 GTCTAAGCAT-ATG
* *** * ** * ** * * * *
602115 TGAAGGCTTAAGGGACCATTGTATGAATTTAC-AACCCATAAAAATGGCATT--GGCATGCA-AA
1 -G-A-G-TTCA-TTCCCA--GTCT-AAGAT-CGGA-CCGGACAGA-GG-GTTGCGGCA-GCACAT
** * * *** * **** ** *
602176 AAT--AT-GAAG-ATGTGCCT-AAACCCACCTACCACCCTATCGATCCCCGGCTTGCGCATTCCG
53 GCTGGCTCG-GGCATGTG-CTGGTGCGCA--T--TTTTCT-TCG-T-CGGGGC--AC-CA-T-CG
**** * * * ** * *
602236 CCCCTCTGGTCGTCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCAT
104 CGGAGC--ATCGCCGGAGAACCTG-A--C-CG----G-CGG--CA-TT--G---A--G-G-T--T
* * * * * * * * *
602301 TCCCAGTCTAAGATCGGATCGGACTGAGTGTTGCGGCAGCACATGATG-G-GCTCGGGCATG-TG
144 T--C-G---ACGATCGG--GGGGCCGGGGGGTG-TGC-GCACATGATGTGCGAT-GGG--TGCTG
* ** * ** * * * * * * * *
602363 TTGGTGTCGCATTTTTCTTCGCCGAGGCACC-AT-CGTCGGAGC-ATCCCCGGAGAACTTGAC-C
196 GTACT-TGGCCCTTATATTGGCC----C-CCTATCCCTC--ATCAAACCTC-GAGAAC-TCACAC
** ** ** ** * ***** ** ** * * * *
602424 GGCGGTATTG-GGGTTCCGACGA-TCGGGGGGCTGGGGGGTCTG-AGCGCA-TGATGTG-CGGTG
251 CCCCTTAAAGAGCATT-TGA-GATTTTACAGG-TTTGCTGCCAGTAGC-CATTAAAGTGTC--TG
** * * ** ** * ** * ** *
602484 -GGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAAGTCACACCC
310 AAATGG-GG-A-----CACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCG
** *** * ** *** * *
602548 CCTTAAAGAGCGTTTGAGATTTTACAGGTT-TGC-TGCCAGTAGCCAT-TAA--A-C-TGTCTGA
357 AGTT-TTTAGC---TGA-ATTTT----TTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-A
* ** ** * * ** * *
602606 A--ATGGGGACACTTTTTTCAAAT-GGT-C-ACAAAATCTT-GTACACTTCGAGTTTTTACCTG-
412 AGTTTGGGG-C-C-----AAAAATCCTTCCGAAAAAATTTTAAAAAACCTCGA------ACC-GC
** ***** ** * ** *
602664 -AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGTCCA-AAAA
463 AAAAAGTTTCAAAAAT--CATGAAAAATAGAA--A--ACGAGT--C--GTCTT--G-CCATGAAA
* ** *** *** ** ** * ** *
602726 TCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
515 --CTTCACG-TGAAGGCTTAAGGGA--CC--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G-
* * * ** * * * ** ** ***
602790 AAACGAGTCGTCTTGCCATGAAACTTCATG-TGAAG-GCTTAAGGGA-CCATTGTATGAATTTA-
568 --GC-A-TTGGCACG-CA-GAAA--T-ATGAAGATGTGCCTAA---ACCCA-CCTACCACCCTAT
** * * * * *** * ** ** * **
602851 CAAGCCATAAAAATGGCAATG-GCATGCAG-AAATAT-GAAGA--T-GTGCCTAAACCCACCTAC
620 C--G--AT--CCACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC--CGCCCGCCGCC
* * * * * * * ** * *
602910 CAC-CCTATCGATCCA-CGGCTT-GCGCATCCCGTCTCTC-TACCCGACGTGGTGCT-CGCCCAT
676 CGCTCGTTTCG-TCGATTGGCTTAG-GCATACGGAGT-TCATTCCC-A----GT-CTAAG---AT
* * * **** * * * * ***** *
602970 CCG-CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATGCG-GAGTTCATTCCCAGTCTAAGATC
729 CGGACCGGACCAAGGGTTGCGGC-A---GC--AGG-AT-CGACAG--CA--CACAGAGGGGGACC
* ** * * ** *** **
603033 GGATCAGAT-CGAGGGTTGCAGTAGCAAGATCGACAGCATGCAGAGGGGGACTCG-GTCGATCCC
782 CGATC-GATCCCTGGCTTGC----GC---ATC--CCGC-CCCTCTGGCCGACT-GAG-CG--CCC
* * * * * * *
603096 -CAGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTG
832 GCA-C--GCTCAT-T------TC--GTCGGTT--G-A-CT-TA-G-GC-ATACG-GAG-T---T-
*
603160 AAGCATACGAAGTTCATTCCCAGTCTAAGCATACG
871 --------------CATTCCCAGTCTAAGCATATG
* * * * * * * * * *
603195 GAGTTGATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCAGCAGCACATGCAGGGCTCGAGT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGC-TGGCTCGGGC
* * *
603260 ATTTGCTGGTGTCGCATTTTT-TTCGTCGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * * * *
603324 CGGCGGCATTGGGGTTCCGGCGATCGAGGGGGTC-AGGGG-GTGCGCAAATGATGTGCGATGGGT
128 CGGCGGCATTGAGGTTTCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
603387 GCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
603452 AAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
603517 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCATCCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
603582 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGG-CAAAAATTCTGTCCAAAAAAATTTTTA
387 AACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCT-TCCGAAAAAATTTTAA
* * * * *
603646 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATAA
448 AAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
603711 AACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *** * * *
603776 GTAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCGGTTGGTTTACGCATCCT
578 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCATCCC
* * * *
603841 GTCTCTCTGGCC-AGTGTAGTACCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
642 GTCTCTCTGGCCGA-CGTAGTGCCCGCCCGC-CGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
* * * ** *
603905 CGGAGTTCATTCCAAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGGTAGCACG
705 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * * * * *
603970 TAGAGGGGGACCTGACCGATCCGC-GACTTACACATCCCGCCCCTCTGGCCGACTGAGAGCCCGC
770 CAGAGGGGGACCCGATCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
** * * *
604034 ACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACG
834 ACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * * *
604092 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACAAGCTGGTCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGG-CTCGGGC
* * * * ** * *
604157 ATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCACCGGATCATCATCGGAGAACTTAAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCGGAGAACCTGAC
* * * *
604222 CAGCGGCATTG-GCTTTCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGAGATGGG
128 CGGCGGCATTGAGGTTT-CGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
604286 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
604350 TAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCTATTAAAGTTTCT-AAATTGGGGAC
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGAC
* * *
604414 ACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATG
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
604479 CAAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
385 CCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * ** * *
604544 AAAAATCCT-GAACCGTAAAAATTTTTGAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCAT
447 AAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
** * *
604608 GAAACTTCACGTGAAGGCTTAAGGGACCAGAGTATGAATTTACATGCCATAAAAATGGCAATGGC
511 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * * *
604673 GCATAGAAATATGAAGATATGCCTAAACCTACCTACCACCCTATCGATCCAAGGCTTGCGCATCC
576 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * **
604738 CGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGCTCGTTTCATCAGTTTATCTTAGGCAT
641 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTC-GATTGGCTTAGGCAT
* * ** * * **
604803 ACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACTGAGGGTTACAGCAGCAGGATCGGTAGCAC
704 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCAC
** * * * ***
604868 GTAGAAGGGGACGCGATCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGGTTG
769 ACAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* * * *
604932 CACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCA-TCTACGCATAGG
833 CACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAAGCATATG
* * *
604991 GAGTTCACTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* * * * ** * *
605056 ATGTGCTGGTGCCGTATTTTTCTTC-CCTGGGGCACCATCACCAGAGCATCATCAGAGAAGCTGA
65 ATGTGCTGGTG-CGCATTTTTCTTCGTC-GGGGCACCATC-GCGGAGCATCGCCGGAGAACCTGA
* * * *
605120 CCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGG
127 CCGGCGGCATTGAGGTTTCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
*
605185 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
605250 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
605315 CTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
605380 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAATGTTTTA
386 CAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAA-ATTTTA
** * **
605444 AAAAATCC-CGAATAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
447 AAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
605508 GAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
511 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
605573 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCC
576 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * * * *
605638 CTTGTCTCTGGTCGGCGTAATGCCCGCTCGCCCGCCTGCTTGTTTTGTCGGTTGGCTTAGGCATA
641 CGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
* ** * * * * ** * * * **
605703 CAGCCTTCATTCCTAG-CTAGGATCGGACTGAACTGAGGGTTGTGGCAGCAAGATCGGCAGCATG
705 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * * * * *
605767 CAGAAGAGGACCCGA-CTGATCCCCGGCTTACGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGC
770 CAGAGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * *
605831 ACGTTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
834 ACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
605889 GAGTTCATTCACAGTCTAAGATCGGACCTGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
*
605954 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * *
606019 CGGTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGTGT--GCACATGATGTGGGATGGGT
128 CGGCGGCATTGAGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
606082 GTTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
606147 AAAGAGCGTTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
606212 TTTTTTCAAATGATCAAAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTTTCGCTTGC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGC
* * * * * * *
606277 CAAAAAAAATACAAAGATCATGTTTACTAAGTTTGGGCCCAAAACTCCTTTCAAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACG--T-CTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * *
606342 AAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
448 AAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
606407 AACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
606472 ACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
578 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
606537 TCTCTCTAGTCGGCGCAGTGCCTGCCCGCCCGCCCGCCCGTTCGGTTCGTCGGTTGGCTTAGGCA
643 TCTCTCTGGCCGACGTA--G--TGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
* ** * * * * **
606602 TACGGAGATCATTCCCAGTCTAAGATCAAACTGGACCGAGGGATACGGCAGCAGGATCGGTAGCA
703 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCA
** * * * * * *
606667 CGTATAGGGGGACCCGGTCGAT-CCTCGGCTTGTGCATCCTG-CCCTCTGGCCGGCTGAGCGCCG
768 CACAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * * ** * *
606730 GCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCCAGTCTAAGCATACG
832 GCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
606790 CAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGGTTGTGGCAGCACATGTTGGGATCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCT-GGCTCGGG
** * * * **
606854 CATGTGCTGGACCGCATTTTTCTTCATCCGGGCACCATCACCGGAGCATCGTTGGAGAACCTGAC
64 CATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCGGAGAACCTGAC
* * * * **
606919 CGGTGGCATTGGGGTTCCGATGATCGGGGGGCCGGGAGGGGTGTGCGCACATGATGTAAGATGGG
128 CGGCGGCATTGAGGTTTCGACGATCGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGG
* * *
606984 TGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCCTTGTCCATCATCAAACCTCAAGAACTCA
191 TGCTGGTACTTGGCCCTTATATTGG---C----CCCC-TATCCCTCATCAAACCTCGAGAACTCA
* *
607049 CACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
607114 TGGGGACACTTTTCTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
607179 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCGTT--TAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCC-TTCCGAAA
* * ** *
607241 AATATTTTAAAAAATCC-CGAACAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCG
439 AA-ATTTTAAAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
607305 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
607370 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
567 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
607435 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCCCGCCTGCCCGCCTACTCGCTTCATCGGT
632 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCG----CTCGTTTCGTCGAT
* * ** * * * *
607500 TGGCTTAGGCATACGAAGATCATTCCCAGTCTAAGATCATACTGGACCGAGAGTTGTGGCA-CTA
692 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGC-A
* * * * * *
607564 GGATC-AGCAGCACATAGAGGGGGACCCGGTCGTTCCCCGACTTGCGCATCCCGCCTCTCTGGCC
756 GGATCGA-CAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
607628 GGCTGAGCGCCCGTATGCTCGTTTAGTTGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA
820 GACTGAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
607693 GCATATG
885 GCATATG
* * * * * **
607700 AAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
** * * *
607765 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATGGTCAGAGCATCGTCGGAGAACCTGA-
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * * * *
607829 TGGACGGCATTG-GGGTTCAGGCAATCGTGGGGGCCGGGGGGGTGTGTGCACATGATGTGTGATG
128 CGG-CGGCATTGAGGTTTC-GACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
*
607893 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCAGC-CCC
189 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCC
* *
607957 CCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGCTGAAATGGGG
253 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * *
608022 ATAGTTGTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTGAATTTTTTTGTACA
318 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
608087 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTCGAAACTCCTGCCGAAAAAATT
383 TGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGC-CAAAAATCCTTCCGAAAAAATT
* * * * * *
608151 TTAAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAGTCGTCTTGCT
444 TTAAAAAACCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
608216 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
509 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
608281 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
574 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
608346 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTTGTC-AGTTGGCTTAGGC
639 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGC
* * * * * * * * * * **
608410 ATATGGAGTTCATTCCTAGTCTGAGATCAGACCAGACCGATGGTTGTGGTAGCAGGATTGGTAGC
702 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGC
** * * * * *
608475 ATGCAGAGAGGGACCCG-GCTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
767 ACACAGAGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * **
608539 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAGCATACA
831 CGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
** *
608600 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* *
608665 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGA-CATCGCCAGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * * * * *
608729 CGACGGCATTGGGGTTTCGGCGATCGGGGGGGCAGGGGGTGTGCGCAAATGATGTGCGATGGGTG
128 CGGCGGCATTGAGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
608794 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
608859 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
608924 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCAAGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
608989 ATAAAAATAGAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCTCTT-CGAAAAAATTTTAAA
388 ACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATC-CTTCCGAAAAAATTTTAAA
* ** * *
609053 AAATCCT-GAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAATGAGTCATCTTGCCATG
449 AAA-CCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
609116 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAGAAGCCATAAAAATGGCATTGGCA
512 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
609181 TGGAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATACC
577 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
609246 GTCTCTCTGGTCGACGTAGTGCCCGCCCGCGCCTGCCCGTCCGCTCATTTCGTCGGTTAGCTTAG
642 GTCTCTCTGGCCGACGTAGTGCCCG-CC-CGCC-G--C--CCGCTCGTTTCGTCGATTGGCTTAG
* * * * * * * *
609311 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCA
700 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
** * * * * ** *
609376 GCACGTAGAGGGGGACTCGGTCAAT-CCTCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGTG
765 GCACACAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
609440 CTCGCACGCTCGTTTCGTGGGTTGACTT----AT-----G--CA-T---A--C---G---A--
829 CCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * *
609478 -AGTTCATTCCCAGTCTAAGATCGGACC--ACCGAGTGTTGCGACAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* * * * *
609540 ATGTGCTGGTGCCACATTTTTCTTCATCGGGTCACCATCGCCAGG-CCATCGTCGGAGAACCTGA
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-C-GGAGCATCGCCGGAGAACCTGA
* * * *
609604 CCGGCGGCATTGGGGTTCCGGTGATCGAGGGGCCGGGGGGCCGGGGGGTGTACGCACATGATGTG
127 CCGGCGGCATTGAGGTTTC---GA-CGA----TCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
609669 CGATGGGTGCTGGTACTTGGTCCTTATATTGG-CCCCTGTCCCTCATCAAACCTCAAGAACTCAA
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
609733 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
609798 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
609863 TGCATGCAAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * **
609928 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCA-GAAAAAATAGAAAACGAGTCGTCT
441 ATTTTAAAAAACCTCGAACCGCAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCT
*
609992 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
610057 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
570 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
610122 GCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGTCCGTCCGCTTGTTTCGTCGGTTAG
635 GCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCG-CCGCCCGCTCGTTTCGTCGATTGG
* * *
610187 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGAT
695 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGAT
* * ** * * * **
610252 TGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
760 CGACAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
610317 AGCGCTCGCACGCTCGTTTCGTGGGTTGAC-T-----TAC---G--CA-T---A--C---G---A
825 AGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
610359 --
890 TG
* * **
610359 -AGTTTATTCCCAGTCTAAGATCGGACC--ATC-GAGTGTTGCGGCAGCACATGCTGGGCTTAGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGGCAGCACATGCT-GGCTCGGG
* * * * * *
610420 CATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGTCACCATCGCTAGACCATCGTCGGAGAACCCG
64 CATGTGCTGGTG-CGCATTTTTCTTCGTC-GGGGCACCATCGC-GGAGCATCGCCGGAGAACCTG
* * * *
610484 ACCGGCGACATTGGGGTTCCG-CTGATCGAGGGGCCAGGGGGCCGGGGGGTGTACGCACATGATG
126 ACCGGCGGCATTGAGGTTTCGAC-GATC-----G---GGGGGCCGGGGGGTGTGCGCACATGATG
*
610548 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
610613 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
610678 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
610743 TGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAGAAATTCTTCCGAAA
377 TGTGCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
610808 AAATTTTAAAAAATCC-CGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
439 AAATTTTAAAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
610872 CTTGCGATGAAACTTCACATGTAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATG
503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
610937 GCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
568 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * *
611002 GCGTGTCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCATTTCGTCGGTTGGCT
633 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGATTGGCT
* * * * * * * * *
611067 TAGGCATACGGTGTTCAATCCCAGTGTAAGATTGAACCAGATCAAGGGTTACAGCAGCAGG-TGC
697 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGAT-C
* * * * *
611131 GGCAGCACGCAGAGGGGGACCCGATCGATCTCCT-GCTTGCGCATCTCGCCCCTCTGGTCGGCTG
761 GACAGCACACAGAGGGGGACCCGATCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* ** * * * * *
611195 AGCGCTCGCACGCTTGTTTCGTGGGTTAACTTAGGAATACGGAGTTCATTCCTAGTCTAAGCTTA
825 AGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
611260 TG
890 TG
* * * *
611262 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGTTGAGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTG-GCTCGGGC
* * *
611327 ATGTGCTGGTGTCGCATTTTTC-T--T-----CACCA--G-GCACCATCGTCGGAGAACCTGACC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACC
* * * * *
611381 GACGACATTGGGGTTCCGACGATCGGGGGGTCGTGGGGGTGTGCGCACATGATGTGCGATGGGTG
129 GGCGGCATTGAGGTTTCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * *
611446 CTGGTACTTGGCCCTTATGTTGGCCCCCCTATCCTTCATCAAACCTCGAGAACTCGCACCTCCTA
193 CTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * **
611511 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGA-TT
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
611575 TTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAGTTTTTTTGTGCATGC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * * *
611640 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAATCCTTTCGAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * * *
611705 AAAATCCT-GAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCTTG
448 AAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * **
611769 AAACTTCACGTGAATGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCA
512 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
611834 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCGCATCTC
577 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
611899 GTCTCTCTGGCCTACGTACTGCCCGCCCGCCCGCCCGCTCATTTCATCTG-TTGGC-TCGGCATA
642 GTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTC-GATTGGCTTAGGCATA
* * ** *** * * * * *
611962 CGGAGTTCATTCCCCGTCTAAGATCAGACCAAATTGATGGTTACAGCAGTAGGATCGACAGCACG
705 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * * * *
612027 CAAAGGGGG-CCCTG-GCTGAT-CCTCGGCTTACGCATCCCGCCTCTCTGGCCGACTGAGCACTC
770 CAGAGGGGGACCC-GATC-GATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * * * * *
612089 GCACGCTCGTTTTGTGGGTTGACTGATGCATACGGAGTTCATTCCCAGTCTAAGCATACG
832 GCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* *** * * * *
612149 GAGTTCATTCCCAGTCTAAGATCGAACTAAACAGAGGGTAGTGGTAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCT-GGCTCGGGC
* ** * * *
612214 ATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATTGTCGGAGAACCTGAC
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCGGAGAACCTGAC
*
612279 CGGCGGCATTGAGG-TTCTGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
128 CGGCGGCATTGAGGTTTC-GACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
612343 TGTTGGTACTTGGCCCTTATATTGGCCGCCAATCCCTCATCAAACCTCGAGAACTCACAACCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
612408 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
612473 TTTTTTTCAAATGGTCACAAAATCTTGTACAATTC-AGGTTTTTAGCTGAATTTTTTTGTGCATG
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATG
*
612537 CCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCC-TCTCG-AAAAATTTT
385 CCAACAAAAATACAAGGATCACGTCTA--A-GTTTGGGGCCAAAAATCCTTC-CGAAAAAATTTT
* * *
612600 AAAAAATCC-CGAACCGGAAAAAGTTTC-AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
446 AAAAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
612663 TGAAACTTCACGTGAAGTCTTAAGAGACCATTGTATGAATTTACAAGCCAT-AAAACGGCATTGG
510 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
612727 CAAGCAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCACATC
575 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
612792 TCGTCTCTCTGGCCGATGTAGTGCCCGCTCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
640 CCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CG-CCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * * * * * **
612857 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGATTACAGTAGCAGGATCGGTA
700 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
** * * * *
612922 GCATGCAGAGGGGGACCCGA-CTGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCA
765 GCACACAGAGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * * * *
612986 CCCGTACGCTCGTTTTGT-GAGTTGACTTAGGCATACGGAGTTCACTCCTAGTCTAAGCATACG
829 CCCGCACGCTCATTTCGTCG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
613049 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCAGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGC-TGGCTCGGGC
* * * * * * *
613114 AGGTCCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGACCATCGCCGAAGAACCTGAA
65 ATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGAC
** * * *
613179 CGATGGCGTTG-GGGTTCTGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATCTGCGATGGG
128 CGGCGGCATTGAGGTTTC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
613243 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
613308 TAAAGAGCATTTGAGATTTTACAGGTTCGCCGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
613373 CTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
613438 CAACAAAAATACAAGGATCATGCCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
386 CAACAAAAATACAAGGATCA--CGT-CTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* **
613503 AAAATCC-CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
448 AAAA-CCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
613567 AAGCTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
512 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * **
613632 CACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTCCTTATCCC
577 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
613696 GTCTCTCTGGCTGACGTAGTGCCCACTCGCCCACCCGCCCTCTCGTTTCATC-AGTTGGCTTAGG
642 GTCTCTCTGGCCGACGTAGTG--C-C-CGCCC-GCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGG
* * ** * * * *
613760 CATACGGAGTTCATTCCCAGTGTAAAATCTAATCGAATCC-AGGGTTACGGCAGTAGGATCGACA
701 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAAGGGTTGCGGCAGCAGGATCGACA
*
613824 GCACGCAGAGGGGGAC
765 GCACACAGAGGGGGAC
613840 TCGACCAATC
Statistics
Matches: 15388, Mismatches: 2640, Indels: 2097
0.76 0.13 0.10
Matches are distributed among these distances:
872 5 0.00
873 132 0.01
874 460 0.03
875 125 0.01
876 372 0.02
877 223 0.01
878 165 0.01
879 65 0.00
880 69 0.00
881 385 0.03
882 686 0.04
883 588 0.04
884 428 0.03
885 79 0.01
886 253 0.02
887 491 0.03
888 542 0.04
889 53 0.00
890 19 0.00
891 63 0.00
892 47 0.00
893 192 0.01
894 120 0.01
895 325 0.02
896 946 0.06
897 1001 0.07
898 590 0.04
899 1119 0.07
900 1526 0.10
901 651 0.04
902 310 0.02
903 453 0.03
904 461 0.03
905 42 0.00
906 79 0.01
907 5 0.00
908 8 0.00
909 321 0.02
910 183 0.01
911 257 0.02
912 11 0.00
914 2 0.00
915 2 0.00
916 2 0.00
917 3 0.00
918 2 0.00
919 1 0.00
920 1 0.00
921 5 0.00
922 1 0.00
923 4 0.00
924 47 0.00
925 5 0.00
926 5 0.00
927 11 0.00
928 7 0.00
929 4 0.00
931 1 0.00
932 1 0.00
933 9 0.00
934 10 0.00
936 4 0.00
937 6 0.00
938 3 0.00
939 8 0.00
940 5 0.00
941 2 0.00
942 3 0.00
945 1 0.00
946 1 0.00
947 7 0.00
948 3 0.00
949 15 0.00
951 2 0.00
952 2 0.00
953 4 0.00
954 3 0.00
956 2 0.00
959 5 0.00
960 10 0.00
961 3 0.00
962 14 0.00
963 5 0.00
964 2 0.00
965 5 0.00
966 16 0.00
967 30 0.00
968 5 0.00
969 6 0.00
970 4 0.00
971 1 0.00
972 5 0.00
973 1 0.00
974 1 0.00
977 1 0.00
978 6 0.00
979 5 0.00
980 3 0.00
981 7 0.00
983 5 0.00
984 5 0.00
985 13 0.00
986 13 0.00
987 5 0.00
988 3 0.00
989 2 0.00
990 1 0.00
992 3 0.00
993 2 0.00
994 1 0.00
995 2 0.00
996 18 0.00
997 14 0.00
998 15 0.00
999 6 0.00
1000 7 0.00
1001 3 0.00
1002 13 0.00
1003 9 0.00
1004 8 0.00
1005 3 0.00
1006 12 0.00
1007 4 0.00
1008 14 0.00
1009 14 0.00
1010 6 0.00
1013 5 0.00
1014 5 0.00
1015 10 0.00
1016 10 0.00
1017 10 0.00
1018 5 0.00
1019 23 0.00
1020 7 0.00
1021 24 0.00
1022 38 0.00
1023 14 0.00
1024 52 0.00
1025 96 0.01
1026 90 0.01
1027 108 0.01
1028 78 0.01
1029 56 0.00
1030 87 0.01
1031 185 0.01
1032 124 0.01
1033 122 0.01
1034 98 0.01
1035 102 0.01
1036 718 0.05
1037 104 0.01
1038 95 0.01
1039 122 0.01
1040 97 0.01
1041 91 0.01
1042 48 0.00
1043 63 0.00
1044 33 0.00
1045 46 0.00
1046 36 0.00
1047 55 0.00
1048 44 0.00
1049 37 0.00
1050 34 0.00
1051 17 0.00
1052 33 0.00
1053 296 0.02
1054 86 0.01
1055 44 0.00
1056 36 0.00
1057 28 0.00
1058 138 0.01
1059 260 0.02
1060 164 0.01
1061 76 0.00
1062 50 0.00
1063 61 0.00
1064 53 0.00
1065 55 0.00
1066 89 0.01
1067 105 0.01
1068 99 0.01
1069 36 0.00
1070 47 0.00
1071 43 0.00
1072 22 0.00
1073 49 0.00
1074 45 0.00
1075 38 0.00
1076 19 0.00
1077 20 0.00
1078 27 0.00
1079 17 0.00
1080 18 0.00
1081 11 0.00
1082 29 0.00
1083 42 0.00
1084 52 0.00
1085 29 0.00
1086 35 0.00
1087 71 0.00
1088 184 0.01
1089 10 0.00
1090 3 0.00
1091 5 0.00
1092 222 0.01
1093 6 0.00
1094 4 0.00
1095 4 0.00
1096 7 0.00
1097 8 0.00
1098 4 0.00
1099 1 0.00
1101 7 0.00
1102 6 0.00
1103 8 0.00
1104 3 0.00
1105 3 0.00
1106 1 0.00
1107 2 0.00
1109 1 0.00
1110 1 0.00
1111 1 0.00
1112 1 0.00
1113 4 0.00
1115 3 0.00
1118 4 0.00
1120 1 0.00
1122 3 0.00
1123 9 0.00
1125 6 0.00
1126 8 0.00
1127 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCACATGCTGGCTCGGGCA
TGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACCGG
CGGCATTGAGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAACCTC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGAC
CCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCG
TCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
Found at i:599199 original size:26 final size:26
Alignment explanation
Indices: 599169--599221 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
599159 GTTGACCTAG
599169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
599195 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
599221 G
1 G
599222 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:600843 original size:26 final size:26
Alignment explanation
Indices: 600804--600859 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
600794 TTTGTTGATT
* *
600804 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACAGAGTTCATTCCCAGTC
600830 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
600856 TAAG
1 TAAG
600860 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:601927 original size:31 final size:32
Alignment explanation
Indices: 601881--601942 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
601871 ATGGGGACAC
601881 TTTTTTCAAATTGGTCACAAAATCTTGTACAT
1 TTTTTTCAAATTGGTCACAAAATCTTGTACAT
601913 TTTTTTCAAA-TGGTCACAAAATCTTGTACA
1 TTTTTTCAAATTGGTCACAAAATCTTGTACA
601943 CTTCGAGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (32 bp):
TTTTTTCAAATTGGTCACAAAATCTTGTACAT
Found at i:602134 original size:746 final size:735
Alignment explanation
Indices: 601166--603051 Score: 2326
Period size: 705 Copynumber: 2.6 Consensus size: 735
601156 TTGGCGACAC
*
601166 TTTTTTCAAAGGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
1 TTTTTTCAAA-GGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAA-TTTTTTGTGCATGCC
601231 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAA
63 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAA
* ** * *
601296 AAATCCCAAACCGCAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAA
128 AAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** *
601361 ACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
193 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
601426 TAGAAATAGGAAGATGTGCCTAAACGCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGT
258 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
601491 CTCTCTAGCCACGTAATGCCTGCCCGCCCGCCCGCCCGCTCG-TTCTGTCAGTTGGCATAGGCAT
323 CTCTCTAGCCACGT--TG-CTGCCCG-CCGCCCGCCCGCTCGTTTC-GTC-GTTGGCTTAGGCAT
** * * * *
601555 ACAAAGTTCATTCCCAGTCTAAGATCGAACCAGCCTGAGGGTTGCGATAGTAGGATCGATAGCAC
382 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCA-CAT-GAT-GCAC
* ** *
601620 ATCGAGG-GGGACCT-G-GCCG-A-TCCCCGACTTGCGCACCATCATCGGACCATCGCCGGAGAA
444 -TCG-GGCAGGACCTGGTGCCGCATTCCCCGACGAG-GCACCATCATCGGACCATCCCCGGAGAA
* * *
601680 CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGCCCTGGGGGGTGTGCGCACATGATGTGCG
506 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-CCTGGGGGGTCTGAGCACATGATGTGCG
* *
601745 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGATCTCACAC
570 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCAGCAAACCTCGAGAACTCACAC
*
601810 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGG
635 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAACTGTCTGAAATGG
601875 GGACACTTTTTTCAAATTGGTCACAAAATCTTGTACA
700 GGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACA
601912 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTGTGCATGCC
1 -TTTTTTCAAA-GGTCACAAAATCTTGTACACTTCGA-GTTTTAGCTGAATTTTTTGTGCATGCC
* * * *
601977 AAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTAAA
63 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC-GAAAAAATTTAAA
* * * *
602041 AAAATCTCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCACGA
127 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
602106 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCAT
192 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
602171 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCGCATTCCG
257 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * * * * * * *
602236 CCCCTCT-G-GTCG-T-CTG--AG-TGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGG
322 TCTCTCTAGCCACGTTGCTGCCCGCCGCCCGCCCGCTCGTTTCGT-CGTTGGCTTAGGCATACGG
* * * * * **
602294 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGTGTTGCGGCAGCACATGATGGGCTCGGGCA
386 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGATGCACTCGGGCA
* *** * ** * * * *
602359 TGTGTTGGTGTCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCCCCGGAGAACTTGACC
451 GGACCTGGTGCCGCA---TTCCCCGACGAGGCACCATCATCGGACCATCCCCGGAGAACCTGACC
* * * * *
602424 GGCGGTATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTCTGAGCGCATGATGTGCGGTGGGTGG
513 GGCGGCATTGGGGTTCCGACGATCGGGGGCCTGGGGGGTCTGAGCACATGATGTGCGATGGGTGC
* *
602489 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAAGTCACACCCCCTTAA
578 TGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCAGCAAACCTCGAGAACTCACACCCCCTTAA
* * *
602554 AGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTT
643 AGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAACTGTCTGAAATGGGGACACTT
602619 TTTTCAAATGGTCACAAAATCTTGTACA
708 TTTTCAAATGGTCACAAAATCTTGTACA
* * *
602647 ---CTTC-GA-GT-------T-TT-TAC-C-T-GA-----A--T---TGTTTTGTGCATGCCAAC
1 TTTTTTCAAAGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTGTGCATGCCAAC
* *
602685 AAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTTCGAAAAAATTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAAAAA
* *
602750 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
131 TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
602815 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAG
196 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
602880 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
602945 TCTACCCGACGTGGTGCTCGCCCATCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATGCG
326 TCTAGCC-ACGT--TGCT-GCCC-GCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACG
* *
603010 GAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCGAGGGTTGC
385 GAGTTCATTCCCAGTCTAAGATCGAACCAGACT-GAGGGTTGC
603052 AGTAGCAAGA
Statistics
Matches: 993, Mismatches: 119, Indels: 84
0.83 0.10 0.07
Matches are distributed among these distances:
705 258 0.26
706 3 0.00
708 3 0.00
710 1 0.00
711 1 0.00
712 2 0.00
713 1 0.00
716 4 0.00
717 69 0.07
718 1 0.00
719 3 0.00
720 2 0.00
721 1 0.00
728 2 0.00
730 3 0.00
731 8 0.01
732 3 0.00
733 6 0.01
734 3 0.00
735 86 0.09
736 163 0.16
737 59 0.06
738 6 0.01
739 3 0.00
741 1 0.00
744 2 0.00
745 4 0.00
746 249 0.25
747 45 0.05
748 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (735 bp):
TTTTTTCAAAGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAAAAA
TCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTAGCCACGTTGCTGCCCGCCGCCCGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGATGCACTCGGGCAGGACC
TGGTGCCGCATTCCCCGACGAGGCACCATCATCGGACCATCCCCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGCCTGGGGGGTCTGAGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTAACCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACA
Found at i:603199 original size:26 final size:26
Alignment explanation
Indices: 603160--603214 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
603150 GGGTTGACTG
*
603160 AAGCATACGAAGTTCATTCCCAGTCT
1 AAGCATACGAAGTTCATTCCCAATCT
* *
603186 AAGCATACGGAGTTGATTCCCAATCT
1 AAGCATACGAAGTTCATTCCCAATCT
603212 AAG
1 AAG
603215 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (26 bp):
AAGCATACGAAGTTCATTCCCAATCT
Found at i:604098 original size:26 final size:26
Alignment explanation
Indices: 604062--604111 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
604052 GACTTAGGCA
604062 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
604088 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
604112 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:604588 original size:26 final size:26
Alignment explanation
Indices: 604534--604590 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
604524 CTCCTTTCGA
***
604534 AAAAATTTTAAAAAATCCTGAACCGT
1 AAAAATTTTAAAAAATCCTGAAAAAT
**
604560 AAAAATTTTTGAAAATCCTGAAAAAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
604586 AAAAA
1 AAAAA
604591 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAT
Found at i:604615 original size:899 final size:898
Alignment explanation
Indices: 602283--613839 Score: 14720
Period size: 900 Copynumber: 12.9 Consensus size: 898
602273 TGGGTTGACT
* * * *
602283 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGTGTTGCGGCAGCACATGAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * ** * * **
602348 GGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCCCCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * *
602413 AGAACTTGACCGGCGGTATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTCTGAGCGCATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
602477 TGCGGTGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAAGTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
602542 ACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
602607 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
602672 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTTCGAAA
391 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
602737 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
456 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
602802 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
521 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
602867 CAATGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
586 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
602932 CGCATCCCGTCTCTCTACCCGACGTGGTGCTCGCCCATCCGCCCGCCCGCTCGTTTCGTCGATTG
651 CGCATCCCGTCTCTCTGGCCG-CGTAGTGC-C-CGC--CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
602997 GCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCAGTAGCAAGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGA
* * * * * *
603062 TCGACAGCATGCAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGTT
776 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
603127 GAGCACCTGCACGCTCGTTTCGTGGGTTGACTGAAGCATACGAAGTTCATTCCCAGTC
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
603185 TAAGCATACGGAGTTGATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCAGCAGCACATGCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * *
603250 GGGCTCGAGTATTTGCTGGTGTCGCATTTTT-TTCGTCGGGTCACCATCGTCGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * *
603314 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGTC-AGGGG-GTGCGCAAATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
603377 TGCGATGGGTGCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
603442 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
603507 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
603572 TGTGCATCCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGG-CAAAAATTCTGTCCAAA
391 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TTCGAA
* * * *
603636 AAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGT
455 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
603701 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *** *
603766 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCGGTTGGTT
585 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCT
* * * * * *
603831 TACGCATCCTGTCTCTCTGGCCAGTGTAGTACCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGC
649 TGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
603896 TTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATC
* * * ** * * * * *
603961 GGTAGCACGTAGAGGGGGACCTGACCGATCCGCGACTTACACATCCCGCCCCTCTGGCCGACTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
604026 GAGCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
604082 TAAGCGTACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACAAGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** * * * *
604147 GGTCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCACCGGATCATCATCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * ** *
604212 AGAACTTAACCAGCGGCATTGGCTTTCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
604277 TGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
604342 ACA-CCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCTATTAAAGTTTCT-AA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
604405 ATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTAAATGTTT
326 A-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
604470 TTGTGCATGCAAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
390 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
604535 AAAATTTTAAAAAATCCTGAACCGTAAAAATTTTTGAAAATCCTGAAAAATAAAAAACGAGTCGT
455 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
604600 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGAGTATGAATTTACATGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * * *
604665 GCAATGGCGCATAGAAATATGAAGATATGCCTAAACCTACCTACCACCCTATCGATCCAAGGCTT
585 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
604730 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGCTCGTTTCATCAGTTTATC
650 GCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGC
* * * * *
604795 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACTGAGGGTTACAGCAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATC
* * * * * *
604860 GGTAGCACGTAGAAGGGGACGCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*** * *
604925 GCGGTTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCA-TC
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTC
* * * *
604981 TACGCATAGGGAGTTCACTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * *
605046 CGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-CCTGGGGCACCATCACCAGAGCATCATCA
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGTCG
* * *
605110 GAGAAGCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGTGCACATGA
130 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
605174 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
605239 TCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCACTAGCCATTAAAGTGTCTG
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
605304 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATGTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
605369 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC-A
389 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * ** * * *
605433 AAAATGTTTTAAAAAATCCCGAATAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
454 AAAA-ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
*
605498 GTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
605563 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
583 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
605628 TTGCGCATCCCTTGTCTCTGGTCGGCGTAATGCCCGCTCGCCCGCCTGCTTGTTTTGTCGGTTGG
648 TTGCGCATCCCGTCTCTCTGG-CCGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * * * ** *
605693 CTTAGGCATACAGCCTTCATTCCTAG-CTAGGATCGGA-CTGAACTGAGGGTTGTGGCAGCAAGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCAGGA
* * * * * * *
605756 TCGGCAGCATGCAGAAGAGGACCC-GACTGATCCCCGGCTTACGCAACCTGCCCCTCTGGCCGGC
776 TCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
605820 TGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
605879 TAAGCATATGGAGTTCATTCACAGTCTAAGATCGGACCTGACCGAGGGTTACGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* *
605944 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* **
606009 AGAACCTGACCGGTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGTGT--GCACATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
606072 TGGGATGGGTGTTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
606137 ACACCCCCTTAAAGAGCGTTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
606202 ATCGGGACACTTTTTTCAAATGATCAAAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * * *
606267 TTTCGCTTGCCAAAAAAAATACAAAGATCATGTTTACTAAGTTTGGGCCCAAAACTCCTTTCAAA
391 TGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* *
606332 AAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
455 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
*
606396 TCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
606461 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCT
584 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
606526 TGCGCATCCCGTCTCTCTAGTCGGCGCAGT-GCCTGCCCGCCCGCCCGCCCGTTCGGTTCGTCGG
649 TGCGCATCCCGTCTCTCT-G--GCCGC-GTAG--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** ** *
606590 TTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAAACTGGACCGAGGGATACGGCAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
* * * * * *
606655 GGATCGGTAGCACGTATAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCTG-CCCTCTGGCCG
773 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** *
606719 GCTGAGCGCCGGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCCAGTC
838 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
606780 TAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGTT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
606845 GGGATCGGGCATGTGCTGG-ACCGCATTTTTCTTCATCCGGGCACCATCACCGGAGCATCGTTGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* *
606909 AGAACCTGACCGGTGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGAGGGGTGTGCGCACATGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGA
** * *
606973 TGTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCCTTGTCCATCATCAAACC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG---C----CCCC-TATCCCTCATCAAACC
* * *
607038 TCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
251 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
607103 AGTGTCTGAAATGGGGACACTTTTCTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGC
316 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
607168 TGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACT
381 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
607232 CCGTTT--AAAAATATTTTAAAAAATCCCGAACAGCAAATAGTTTTGAAAATCATGAAAAATAGA
446 CC-TTTCGAAAAA-ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGA
*
607295 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
509 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
607360 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
574 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
607425 ATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCCCGCCTGCCCGCCTACTCG
639 ATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGCGTAGTGCCCGCCCGCCCGCCCG----CTCG
* * * * ** ** *
607490 CTTCATCGGTTGGCTTAGGCATACGAAGATCATTCCCAGTCTAAGATCATACTGGACCGAGAGTT
699 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * ** * *
607555 GTGGCA-CTAGGATCAGCAGCACATAGAGGGGGACCCGGTCGTTCCCCGACTTGCGCATCCCGCC
764 ACGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * * * *
607619 TCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTAGTTGGTTGACTTAGGCATACGGAGTGCATTC
828 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
607684 CCAGTC
893 CCAGTC
* * * * * **
607690 TAAGCATATGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTATGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
607755 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATGGTCAGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * *
607820 AGAACCTGA-TGGACGGCATTGGGGTTCAGGCAATCGTGGGGGCCGGGGGGGTGTGTGCACATGA
131 AGAACCTGACCGG-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
* *
607884 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
607949 TCAGC-CCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGCT
259 TCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
608013 GAAATGGGGATAGTTGTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTGAATTT
323 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
608078 TTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCTCGAAACTCCTGCC
388 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTTC
* * * * * *
608142 GAAAAAATTTTAAAAAAT-CTCAAACTGCAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAG
452 GAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
*
608206 TCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
608271 AATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACG
581 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
608336 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTTGTCAGTT
646 GCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * ** *
608401 GGCTTAGGCATATGGAGTTCATTCCTAGTCTGAGATCAGACCAGACCGATGGTTGTGGTAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGG
* * * * *
608466 ATTGGTAGCATGCAGAGAGGGACCCGG-CTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
775 ATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
608530 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * **
608590 GAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
608655 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGA-CATCGCCAG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * *
608719 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGG-CAGGGGGTGTGCGCAAATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
608783 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
608848 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
608913 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
608978 TGTGCAAGCCAATAAAAATAGAAGGATCACGTCTACCAAGTTTGCGGCCAAAACT-CTCTTCGAA
391 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TTCGAA
* * *
609042 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAATGAGTCA
455 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCG
* *
609106 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAGAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
609171 GGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCT
584 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
609236 TGCGCATACCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCGCCTGCCCGTCCGCTCATTTCGTCG
649 TGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGC-CC-G--C--CCGCTCGTTTCGTCG
* * * * * *
609301 GTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGT
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * * * * *
609366 AGGATTGGCAGCACGTAGAGGGGGACTCGGTCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCC
772 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
609431 GGTTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTT----AT-----G--CA-T---A--C
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
609476 ---G---A---AGTTCATTCCCAGTCTAAGATCGGACC--ACCGAGTGTTGCGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
609530 GGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGTCACCATCGCCAGG-CCATCGTCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC-GGAGCATCGTCG
* * *
609594 GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGAGGGGCCGGGGGGCCGGGGGGTGTACGC
130 GAGAACCTGACCGGCGGCATTGGGGTTCC---GA-CGA---TCGGGGGGGCCGGGGGGTGTGCGC
* *
609659 ACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGG-CCCCTGTCCCTCATCAAACCTC
188 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
609723 AAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAG
253 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
609788 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTG
318 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
609853 AATTTTTTTGTGCATGCAAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTC
383 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
609918 TTCCGAAAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTTGAAAATCA-GAAAAAATAGAAA
448 TTTCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATG-AAAAATAGAAA
*
609981 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
511 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
610046 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
576 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
610111 CCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGTCCGTCCGCTTGTT
641 CCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCG--C--CCGCTCGTT
* * * *
610176 TCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC
701 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC
* * * *
610241 GGTAGCAGGATTGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
766 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
610306 CTGGCCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTGAC-T-----TAC---G--CA-T---A
831 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
610356 --C
896 GTC
* * *
610357 ---G---A---AGTTTATTCCCAGTCTAAGATCGGACC--ATCGAGTGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
** * ** *
610411 GGGCTTAGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGGGTCACCATCGCTAGACCATCGTCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGTCG
* * *
610475 GAGAACCCGACCGGCGACATTGGGGTTCCG-CTGATCGAGGGGCCAGGGGGCCGGGGGGTGTACG
130 GAGAACCTGACCGGCGGCATTGGGGTTCCGAC-GATC----GG---GGGGGCCGGGGGGTGTGCG
610539 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
187 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
610604 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
252 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
610669 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
317 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
610734 AAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAGAAA-T
382 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACT
* * * * *
610798 TCTTCCGAAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
446 CCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAA
* * * * *
610863 ACGAGTCATCTTGCGATGAAACTTCACATGTAGGCTTAAGGGACCATTGTATGAATTTACAACCC
511 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
610928 ATAAAAATGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
576 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* ** * * *
610993 CTACGGCTTGCGTGTCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCATTTCGT
641 CCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * *
611058 CGGTTGGCTTAGGCATACGGTGTTCAATCCCAGTGTAAGATTGAACCAGATCAAGGGTTACAGCA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCA
* * * *
611123 GCAGG-TGCGGCAGCACGCAGAGGGGGACCCGATCGATCTCCTGCTTGCGCATCTCGCCCCTCTG
770 GCAGGAT-CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
611187 GTCGGCTGAGCGCTCGCACGCTTGTTTCGTGGGTTAACTTAGGAATACGGAGTTCATTCCTAGTC
834 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
611252 TAAGCTTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGTT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
611317 GAGCTTGGGCATGTGCTGGTGTCGCATTTTTC-T--T-----CACCA--G--GCACCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * *
611370 AGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGTCGTGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGAT
* *
611434 GTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCCTATCCTTCATCAAACCTCGAGAAC
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * * *
611499 TCGCACCTCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTA
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
** *
611564 AAATGGGGA-TTTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAGTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * *
611628 TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAATCCTTTCG
388 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * *
611693 AAAAAATTTTAAAAAATCCTGAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTT
453 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
611758 GTCTTGCCTTGAAACTTCACGTGAATGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
611823 TTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGC
583 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
611888 TTGCGCATCTCGTCTCTCTGGCCTACGTACTGCCCGCCCGCCCGCCCGCTCATTTCATCTGTTGG
648 TTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * ** * * *
611953 C-TCGGCATACGGAGTTCATTCCCCGTCTAAGATCAGACCAAATTGATGGTTACAGCAGTAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGAT
* * * * * *
612017 CGACAGCACGCAAAGGGGG-CCCTGG-CTGATCCTCGGCTTACGCATCCCGCCTCTCTGGCCGAC
777 CGGCAGCACGCAGAGGGGGACCC-GGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
612080 TGAGCACTCGCACGCTCGTTTTGTGGGTTGACTGATGCATACGGAGTTCATTCCCAGTC
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *** * * * *
612139 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAAACAGAGGGTAGTGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** * ** *
612204 GGGCTTGGGCATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATTGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
612269 AGAACCTGACCGGCGGCATTGAGGTTCTGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATG
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
612334 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCGCCAATCCCTCATCAAACCTCGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
612399 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
612464 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAATTC-AGGTTTTTAGCTGAATTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTT
* * * *
612528 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTCTCG-A
390 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * *
612592 AAAATTTTAAAAAATCCCGAACCGGAAAAAG-TTTCAAAATCGTGAAAAATAGAAAATGAGTCGT
455 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
612656 CTTGCCATGAAACTTCACGTGAAGTCTTAAGAGACCATTGTATGAATTTACAAGCCAT-AAAACG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
612720 GCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTT
585 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
612785 GCACATCTCGTCTCTCTGGCCGATGTAGTGCCCGCTCGCTCGCCCGCCCGCTCGTTTCGTCGGTT
650 GCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
612850 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGATTACAGTAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGG
* * * *
612915 ATCGGTAGCATGCAGAGGGGGACCC-GACTGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGG
775 ATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
612979 CTGAGCACCCGTACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCACTCCTAGTC
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
613039 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * * * *
613104 GGGCTCGAGCAGGTCCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGACCATCGCCGA
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
* ** * * * *
613169 AGAACCTGAACGATGGCGTTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATC
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
613234 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
613299 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCCGCCAGTAGCTATTAAAGTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
613364 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
613429 TGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
391 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* *
613494 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
456 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
613559 TTGCCATGAAGCTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
521 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
613624 CATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTC
586 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
613688 CTTATCCCGTCTCTCTGGCTGACGTAGTGCCCACTCGCCCACCCGCCCTCTCGTTTCATCAGTTG
651 CGCATCCCGTCTCTCTGGCCG-CGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * *
613753 GCTTAGGCATACGGAGTTCATTCCCAGTGTAAAATCTAATC-GAATCC-AGGGTTACGGCAGTAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A-CCGAGGGTTACGGCAGCAG
*
613816 GATCGACAGCACGCAGAGGGGGAC
774 GATCGGCAGCACGCAGAGGGGGAC
613840 TCGACCAATC
Statistics
Matches: 9362, Mismatches: 1109, Indels: 368
0.86 0.10 0.03
Matches are distributed among these distances:
874 1 0.00
875 71 0.01
876 36 0.00
877 28 0.00
878 156 0.02
879 3 0.00
880 8 0.00
881 377 0.04
882 425 0.05
883 432 0.05
884 58 0.01
886 12 0.00
887 331 0.04
888 386 0.04
889 3 0.00
890 1 0.00
891 1 0.00
892 2 0.00
893 1 0.00
894 43 0.00
895 99 0.01
896 280 0.03
897 995 0.11
898 582 0.06
899 988 0.11
900 1796 0.19
901 327 0.03
902 380 0.04
903 426 0.05
904 256 0.03
905 23 0.00
906 57 0.01
907 3 0.00
908 8 0.00
909 316 0.03
910 181 0.02
911 260 0.03
912 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:605892 original size:26 final size:26
Alignment explanation
Indices: 605856--605908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
605846 GTTGACTTAG
*
605856 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
605882 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
605908 G
1 G
605909 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCACAGTCTAA
Found at i:606786 original size:26 final size:26
Alignment explanation
Indices: 606757--606809 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
606747 GTTGACTTAG
*
606757 GCATACAAAGTTTATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
606783 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
606809 G
1 G
606810 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:612152 original size:26 final size:26
Alignment explanation
Indices: 612116--612168 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
612106 GTTGACTGAT
612116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
612142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
612168 G
1 G
612169 ATCGAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:613045 original size:26 final size:26
Alignment explanation
Indices: 613016--613068 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
613006 GTTGACTTAG
*
613016 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
613042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
613068 G
1 G
613069 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:614714 original size:26 final size:26
Alignment explanation
Indices: 614678--614730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
614668 GTTGACTTAG
*
614678 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
614704 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
614730 G
1 G
614731 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:616390 original size:26 final size:26
Alignment explanation
Indices: 616339--616392 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
616329 TTGGTTGACT
* **
616339 TAGGCATACGTAGTTCATTCTTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
616365 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
616391 TA
1 TA
616393 AGATCGGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:618831 original size:26 final size:26
Alignment explanation
Indices: 618802--618854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
618792 CTGGTCCGAT
618802 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
618828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
618854 C
1 C
618855 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:620618 original size:26 final size:26
Alignment explanation
Indices: 620589--620641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
620579 CCGGTCTGAT
620589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
620615 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
620641 C
1 C
620642 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:622083 original size:898 final size:896
Alignment explanation
Indices: 617679--625079 Score: 9346
Period size: 903 Copynumber: 8.3 Consensus size: 896
617669 NNNNNNCTCA
* *
617679 AGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
617744 CGGACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATG
66 CGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
** * * *
617809 CTCCGGTGA-GGTGCCCTGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
130 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * **
617873 TGCTGCAACCCTTGATCCGGTCCGTTCTTTGACTGGGAATGAACTCTATATGCTTAGACTGGGAA
195 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
617938 TGAACTTCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGTCGCTCAGCCGGCCAGAGTGGC
260 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGGCCAGAGGGGC
* * ** * * *
618003 AGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACC
324 GGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
* *
618068 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA
389 CTCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA
* * * *
618132 GTGGGCAGGCAGACGGGCAGGCAATACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAA
453 GCGGGC-GG--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
618197 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATA-TACTGCGTGCCAATGCCATTTTTATGGCTT
514 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * * *
618261 GTAAATTAATACAACGGCCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
579 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
618326 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTT
644 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTT
*
618391 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAACAAAATTCAGCTA
708 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAAATTCAGCTA
*
618455 AAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTA
772 AAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
618519 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATCAGTTCTCC
836 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* ** * ** *
618580 AGGTTTTATGACTGATAGGGGGCCATTATAAGGGCCAAGTACCAAAACCCATCTCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * **
618645 CGCACACCCCTCCGACCCCCCCGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTTCGATGAT
66 CGCACACCCC-CCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * * * *
618710 GCTCCAATGATGGTGCTCCGACGAAGAAAAATGTGGCACCAGAACATGCTCGAGCCCAGCATGTG
129 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * *
618775 CTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGA
194 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
618840 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCAGCCAGCTAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGGCCAGAGGGG
* * * * * * * * *
618905 CGGGATGCGCAAGTCGGGGATCGACCAGGTTCCCCTCTGTGTGCTGCTGATCCTTCTACCGCAAC
323 CGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * *
618970 CCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA
388 CCTCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
619035 GTAGGCGGGTGAACGGGCGGGCGGGCACTACGTCGGCCATAGAGATGGGATGCGCAAGTCGTGGA
452 --A-GC-GG-G--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
619100 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCGAATGCCATTTTTATG
510 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
619165 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTT
575 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
619230 TTCTATTTTTCACGATTTTTGAAACTTTTTACTGTT-AGGGATTTTTTAAAATTTTTTCAGAAGG
640 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA-GGATTTTTTAAAATTTTTTC-GAAGG
* *
619294 AATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
703 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
619359 GCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAACTGTCTCCATTTGAGACACT
768 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
619424 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCG
833 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
619488 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * * *
619553 TGCACACCACCCGCTAGCCCCCCCGATCGCCGGAACGTCAATGCCGTCGATCAGGTTCTCCGGTG
66 CGCACACC-CCC-C--GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * * *
619618 ATGCTCCGTCGGTGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATG
127 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
619683 TGCTGCCACAATCCT---T---G---G-TC-----C-----A-G---TCCG-ATG-TTAGACTGG
192 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
619722 GAGA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAG
257 GA-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAG
* * * * *
619786 GGGAGGGATGCGCAAGCCAGGGATCGGTCGGGTCACCCTCTGTGTGCTGCTGATCCTGCTGCCGC
320 GGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * ** * * *
619851 AACCTTCGGTCCAGTCCAATCTTAGACCGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAA
385 AACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
619916 CG-AGCGGGTGGGCGGGCGGGCGGGCA-TCATGCCGACCAGAGAGACGGGATGCGCATGCTGTGG
449 CGAAGC----GGGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
619979 ATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTAT
509 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
620044 GGCTTGTAGATTCACACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
574 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
620109 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTCAGAAG
639 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTC-GAAG
** *
620174 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTT-TTTTCATGGA-AAAAAAATT
702 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATT
* * *
620237 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAATGTCCCTATTTCAGACA
766 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
620302 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTC
831 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
620367 G
896 G
* * * * *
620368 AGGTTTGATGAGGTATAGGGGGCCAATATAAGGGTCGAGTGCCAGCTCCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
620433 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGGCAGTCAGGTTTTCTGGCGAT
66 CGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** * * * * * *
620498 GCTCCGGTGATCGTG-CCCGACGAAGAAAAATACGACACCAGCACATGCCCAAGCCTAGCTTGTG
129 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * ** *
620562 CTGTCGTAAACCTCTATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
194 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
620627 ATGAACTCTGTATGCCTAAGTCAACCCCCAAAATGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGC
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGG
* * * * * *
620692 CGGGATGCGTAAGCCAAGGATCGATCGGGTCCCCCTTTGCGTGCTGTCGATCTTGCTGCCACAAC
323 CGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * * * * *
620757 CCTCAGTTCGATCTAATCTTAGACTGGGAATGAATTTCGTATGCCTGAGCCAACCGATGAAACGA
388 CCTC-GATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * ** * *
620822 GCAGGCGGACGGACGGGTGGGCACTACGTTGGCCAGAGAGATGGGATGCGCAAGTCGTGGATCGA
452 --A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
620887 TAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATTCCAATTCCATTATTATGGCTT
514 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
*
620952 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCA
579 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
621017 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGACAGGAGTTT
644 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AGGAGTTT
* * * * * *
621082 TGGCCCAAAACATGGCAGATGTGATCCGTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAA
708 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
**
621147 AAACTCGAAGTGTACAAGATTGGGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAA
773 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAA
621211 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
837 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
621271 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCTTCGCACATCTTGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
621336 TGCACACCCCCCAGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGATAAGGTTCTCCGGC-ATG
66 CGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * ** * *
621400 CTCAGGCGTTGGT-CCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTG
130 CTCCGACGATGGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * * ** *
621464 CTACCGTAACTCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTATTTGCTTAGACTGGGA
194 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
621529 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGCGCGCTCAGCCGGCCAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGCCAGAGGGG
* * * * * * * *
621594 CGGGATGCACAAGCCGGGGATCGATCGAGTCCCCATCTACGTGCTGCCGATTCTACTGCCACAAC
323 CGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * *
621659 CCTCGATGCAGCCTGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
388 CCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
621724 A-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCACATGCCGTGGATCAATAG
452 AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * ** * *
621788 AGTGGTAGGTGGCTTTAGGCACATCCACATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
517 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
621853 AATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
582 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
621918 TTTCACAATTTTTGAAACTTTTTTACTGTTCAGGATTTTTTAAAATATTTTCGCAAGGAGTTTTG
647 TTTCACGATTTTTGAAAC-TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTG
*
621983 GCCCC-AACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
710 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
622047 ACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGG
775 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
622112 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTG
840 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
622169 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATTATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
622234 CGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCAAATGCTGCCGGTCAGGTTCTCTGACGA
66 CGCACA-CCC-CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
*
622299 TGCTCCGATGATGGTGCCCCGACGAAGAAAAAT---G---C-G-----G--C-A--CCAGCATGT
128 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
622347 GCAGCCACAACCCTCGGTCCGGTCCGATCTTAGAC------TG------G---G---A-A-T--G
193 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
622390 -A--AA-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGG
* * * * * ** *
622451 GCGGGATGCGCAAGACAGAGATC-AGCCGGGGCCCCCTTTGCGTGCTATCGATCCTGTTGCCGCA
322 GCGGGATGCGCAAGCCAGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* ** * * * *
622515 ACCCTCAGTTCAATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAAC
386 ACCCTC-GATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
622580 GAGCGGGCGGGCGGGCGGGCGGGCTCTGCACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
450 GA---AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* ** *
622645 AATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCAAATGCCATTTTTATGGC
512 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * *
622709 TTGTAAATTCATACAAGGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
577 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
622774 CTATTTTTCATGATTTTT-AAAAATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
642 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGT
* *
622838 TTTGGCCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGTACAAAAAAATTCAGC
706 TTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
622903 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTAAGACACTTT
770 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
622968 AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
835 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
623030 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACTCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * **
623095 CGAACACCCCCCAGGCCCGCCCGATCATCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGATGAT
66 CGCACACCCCCC-GGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* ** * *
623160 GCTCCGAAGATGGTGCCCCGGTGAAGAAAAATGTGGCACCATCACATGCCTCGAGCCCAGCATGT
129 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGCATGT
*
623225 GCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
193 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
623290 AATGGACTCCGTATGCCTAAGTCAACCCGCGAAATGAGCATGCGGCCGTTCAGCCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGGCCAGAGGG
* * * * * * * *
623355 GTGGGATGCGCAAGTCAGGGATCGGTCGGGTCTCCTTATGCGTGCTGCCGATCTTGCTACCGCAA
322 GCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
**
623420 CCCTC-AGTCCGGTCTCTTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
387 CCCTCGA-T-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * * *
623484 GAGCAAGCGGGCGGACGGACGGGCACTATGTCGGCCAGAGAAACGGGATGTGCAAGCCGTGGATT
450 --G-AAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* **
623549 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTGAATGCCATTTTTATGGC
512 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * * * * **
623614 ATGTGAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCGTGGCAAAATTACTCGTTTT
577 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * ** * *
623679 TTATTTTTGATGATTTTTGAAACTTTTTGTGGTTC-GAGATTTTTTAAAATTTTTTCGGAAAGTG
642 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTC-GAAGGAG
* * *
623743 TTTTGGCCCTAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGC
705 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
623808 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
770 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
623873 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCG
835 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
623935 AGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGTACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
624000 CGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
66 CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
** * ***
624065 TCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGTTTGAGCCCAGCATGTGCT
131 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * *
624130 GCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
196 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
624195 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAACCGGTCGGAGGCGCG
261 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGCCAGAGGGGCG
* * * *
624260 GGATGCGCAAGACAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCC
325 GGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
* * * * *
624325 TCGGTCTGGTCTGATCTTAGATTGGCAATGAAC-CTGTATGCCTAAGCCAACCGACGAAATG-AG
390 TCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG
* * *
624388 CGGGCGGGCGGGCGGACGGGCACTACACCGGCCAAAGAGACGGGATGTGCAAGCCGTGGATCGAT
454 CGGGCGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
624453 AGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTG
515 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
624518 TTAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTA
580 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * * *
624583 TTTTTCACGATTTTTGAAACTATTTGTGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAGTTTC
645 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTT
* * * *
624648 GACCCCAAAC----TAGGCGTCATCCTTGTTTTTTTGTTGGCATGCACAAAAAAAATTCAGCTAA
709 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAA
*
624709 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAAT
773 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* ** *
624774 GGCTACTGGCGGTGAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCG
838 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
624833 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTT
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
624898 TGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATA
66 CGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * *
624963 CTCCGGCGATGGTGCCCCAACGAATAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATTTGC
130 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
625028 CGCCGCAACCGTCGGTCCGATCCGATCTT-GACTGGGAATGAACTCCGTATGC
195 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
625080 CTAAGCCAAC
Statistics
Matches: 5660, Mismatches: 683, Indels: 317
0.85 0.10 0.05
Matches are distributed among these distances:
857 1 0.00
858 158 0.03
859 55 0.01
860 77 0.01
861 365 0.06
862 58 0.01
863 1 0.00
864 1 0.00
865 1 0.00
866 2 0.00
869 1 0.00
872 1 0.00
875 1 0.00
876 1 0.00
877 56 0.01
878 92 0.02
879 2 0.00
880 411 0.07
881 60 0.01
882 5 0.00
883 3 0.00
884 213 0.04
885 7 0.00
886 6 0.00
887 3 0.00
889 2 0.00
890 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 1 0.00
897 41 0.01
898 655 0.12
899 172 0.03
900 49 0.01
901 368 0.07
902 624 0.11
903 936 0.17
904 219 0.04
905 370 0.07
906 49 0.01
907 84 0.01
908 385 0.07
909 8 0.00
910 107 0.02
911 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
CGATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGCG
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
Found at i:623282 original size:26 final size:26
Alignment explanation
Indices: 623253--623305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
623243 CCGGTCCGAT
623253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
623279 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
623305 C
1 C
623306 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:624184 original size:26 final size:26
Alignment explanation
Indices: 624155--624207 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
624145 CTGGTCCAAT
*
624155 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
624181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
624207 C
1 C
624208 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:627391 original size:26 final size:26
Alignment explanation
Indices: 627362--627414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
627352 CTGGTTTGAT
*
627362 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
627388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
627414 C
1 C
627415 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:628076 original size:12 final size:12
Alignment explanation
Indices: 628059--628090 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
628049 TGAGTGATAG
628059 GGGGCCAATATA
1 GGGGCCAATATA
628071 GGGGCCAATATA
1 GGGGCCAATATA
*
628083 AGGGCCAA
1 GGGGCCAA
628091 GTACCAGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:629043 original size:26 final size:26
Alignment explanation
Indices: 629014--629066 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
629004 CCGGTCCGAT
* *
629014 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAAACTAGGAATGAACTCCGCATG
*
629040 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGCATG
629066 C
1 C
629067 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGCATG
Found at i:630826 original size:26 final size:26
Alignment explanation
Indices: 630790--630842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
630780 CAGTTCTGAT
630790 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
630816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
630842 C
1 C
630843 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:631714 original size:26 final size:26
Alignment explanation
Indices: 631685--631734 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
631675 TCGGTCCGAT
*
631685 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGAAATGAACTCCGTACG
*
631711 CTTAGATTGGAAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
631735 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTACG
Found at i:632612 original size:26 final size:26
Alignment explanation
Indices: 632583--632635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
632573 CCGGTCCGAT
632583 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
632609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
632635 C
1 C
632636 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:633922 original size:907 final size:902
Alignment explanation
Indices: 628261--636408 Score: 10359
Period size: 908 Copynumber: 9.1 Consensus size: 902
628251 CCCATCTGCA
* * * *
628261 TGCTGCCGATCCTGCTGCCGTAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * ** *
628326 TGCCTAAGCCAACTGACG--A--AGC--GAGCGGGCGGGCGGGCGAGCTTTACGCC-CCCAGAGA
66 TGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
628384 GACGGGATGTGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
131 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** * * * * *
628449 ATGTGCCAATGCCATTTTTATAGCTTGTCACTTCATACAATGGTCACTTAAGCCTT-ACGGGAAG
196 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * *
628513 TTTCATGGCAAGGTGACTCGTTTTCTCTTTTTCATGATTTTTAAAACTTTTTA-GGTTCGGGATT
261 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA-TTTTTACGGTTCGGGATT
* * *
628577 TTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCCC-AACTTGGTAGATGTGATCCTTGTATTTTTG
325 TTTTAAAATTTTTTCGGAAAGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
** **
628641 TTGGCATGCACAAAAATCTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
389 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
* ** *
628706 AAATGTCCGTATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
454 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
628771 TTAAGGGGGTGTGAGTTGTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCA
519 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
628835 GCACCTATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
584 GCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* *
628900 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGC
647 GCC-GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GACGAAGAAAAATGCGGCACCAGC
** * * * * *
628965 ACATGCCCGAGCAAAGCATGTGCTACTGCAACTCTTGGCCCGGTCCGATCTTAGACTGGGAATGA
710 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
629030 ACTCCGCATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
775 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * ** **
629095 GGAGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCA
840 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTG
* * * ** *
629158 TGCTGCCGATCCTACTACCGCAACCCTCAGTCCATTCCGATCTTAGGCTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
629223 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGTGGGCAGTACGCCGGCCAGA
66 TGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* *
629288 AAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTACGCACATCTTCATATTT
129 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
629352 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGA
194 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
629417 AGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
259 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAATTTTTACGGTTCGGGA
** * *
629482 TTTTTTAAAATTTTTTTAGAAAGAGTTTTGGACCCAAACTTGGTAGATGTGATCCTTGTATTTTT
323 TTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
629547 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
388 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
629612 AAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
453 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
629677 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
518 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
** * *
629742 AGCACCCATTACACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCC
583 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* *
629807 GCCTGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
647 GCC-GTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGC
* *
629872 GCAT------G-CC--CA-----TGCCGCAACCCTCGGTCCGGTCCGATCTTATACTGGGAATGA
710 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * *
629923 ACTCCGTATGCTTAGTC-AGGGAATGAACTCGGTATGCCTAAGTAAACCCACGAAACGAGCGTGC
775 ACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** * * *
629987 GGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTAGGGATCAGTCAGGTCCCCCTTTGTG
839 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTG
** * * * * * * * * *
630051 TGCTACCAATCCTGCGGCCGTAACCCTCATTTCGGAT-CAATCTTAGACTAGTAATGAACTCCTT
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGG-TCCGATCTTAGACTGGGAATGAACTCCGT
*
630115 ATGCCTAAGCCAACCGACGAAACGA--------------GCGGGCGGGCACTACGTCGGCCAGAG
65 ATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
*
630166 AGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
130 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
630231 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
195 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
630296 GTTTCATGGCATGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGAT
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA-TTTTTACGGTTCGGGAT
* * * * **
630361 CTTTTAAAATTTTTTCGGAATGAGTTTTGACCCCAAACTTGGTAGACATGATAATTGTATTTTTG
324 TTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
630426 TTGACTTGCACAAAAAAATTCAGCTAAGAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
389 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
630491 AAGTGTTCCCATTTCGGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCT
454 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* ** * * * *
630556 TTCAGGGGGTACGAGTTCTCAAGGTTTGATGAGGGATAGGGTGACAATATAAGGGCCAAGTTCCA
519 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * *
630621 GCACCCATTACACATCGTGTGCGCACACACCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCC
584 GCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * **
630686 GTCGATCAGGAT-T-------T--T-CGGCGATGGTGCCCCGACGAAGAAAAATGTTGCACCAGC
647 GCCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGC
* * * *
630740 ACATGCCTGAGCCCAGGATGTGCTGCCGCAACCCTCGGTCCAGTTCTGATCTTAGACTGGGAATG
710 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATG
* * * *
630805 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGC
774 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * **
630870 GGGTGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCCCTTCTACG
839 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTG
* * * * * *
630934 TGGTGTTGATCTTGCTGCCGCAACCCTTAGTCCGG-CCTGATCCTAGACTGGGAATGAACTCTGT
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCC-GATCTTAGACTGGGAATGAACTCCGT
* *
630998 ATGCCTAAGCCAACTGACGAAACGA----------GCGGGCAGGCGGGCACTACGCCGGCCAGAG
65 ATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
631053 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
130 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
631118 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCATTAAGCCTTCACGTGAA
195 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
631183 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGAT
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAATTTTTACGGTTCGGGAT
* * * * * ** *
631248 TTTTTTAAATTTTTTC-AAAAGGAGTGTGGGTCCCAAACTTTTTAGACGTGATCCTTCTATTTTT
324 TTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
631312 GTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
388 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
631377 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAACGCTC
453 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* **
631442 TTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATAGCCAAGTACC
518 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
631507 AGCACCCATCGCACATCATGTGCACATACCCCCTGGCCCCCCCGATCGTCAGAACCCCAATGCCG
583 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
631572 CTGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCA
648 C-CGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCA
* * * *
631637 CATGACCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAA
711 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
631702 CTCCGTACGCTTAGA-TTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
776 CTCCGTATGCTTAGACTAGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
631766 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCACCCTCTGTG
840 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTG
* * * * *
631829 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
631894 TGCCTAAGCCAACCGACGAAACGATC--GGGC--G-GGGCGGGCGGGCACCACGCCGGCCAAAGA
66 TGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * * * *
631954 GACGGGATGCACAAGCCGTGGATCGGTGGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTTT
131 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
632019 GTGTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
196 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * **
632084 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTTATGG-T
261 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA-TTTTTACGG-TTCGGGAT
* * * * *
632148 TTTTTAAAATTTTTTCGGAAAGATTTTTAGCCCCAAACTTGTTAGACGTGCTCCTTGTATTTTTT
324 TTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
632213 TTGGCATGCA-AAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATCATTTGAAA
389 TTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
*
632277 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTC
453 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
632342 TTTAAGGGGGTGTGAGTTCTCAAGGTTTG-TGAGGGATAGGGGGCCAGTATAAGGGCCAAGTTCC
518 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* ** *
632406 AGCACCCATCGCACATCATGTGCGGACACCCCTTGG-CCCCCCGATCGTCGGAACCCTAATGCCG
583 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * **** *
632470 TCGCTCAGGTTCTCGGAAGATGCTCCGACGACAACGCCAC-AGCGAAGAAAAATACGGCACCAGC
648 CCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CGA-CGAAGAAAAATGCGGCACCAGC
* * * *
632534 ACATGCCCGAGCCCAGCATGTGCTGTCGCGACCCCCGGTCCGGTCCGATCTTAGACTGGGAAAGA
710 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
632599 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCG
775 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * *
632664 GGCGCTCAGCCGGCCAGAGGGGCGAGATGCGAAAGCCGGGGATC-GACCGGGTGCCCCTTTGTG
840 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAG-CCGGGTCCCCCTCTGTG
* * * *
632727 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGACTGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
** * ** *
632792 TGCCTCTGCCAACCGATGAAACGAGCGGGCAGGCGGAAGGGCGGGCGGGCACTATGCCGGCCAGA
66 TGCCTAAGCCAACCGACGAAACGAGCGGG--GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
*
632857 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTT
129 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
632922 CTACGTGCCAATGCCATTTGTATCGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGA
194 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
632987 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAATTTTTACGATTTGGGAT
259 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAATTTTTACGGTTCGGGAT
*
633052 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
324 TTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * *
633117 TT-GCATGCTCAAAATATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAA
389 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
633181 AAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGATCT
454 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
633246 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCA
519 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
633311 GCACCCATCGTACATTATGTGCGCACACCCGCCGG-CCCCCCGATCGCCAGAACCCCAAGGCCGT
584 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-
* ** *
633375 CAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCAC
648 CCGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
633440 ATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCAGTCTGTTCCGATCTTAGACTGGGAATGAAC
712 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
633505 TCCGTATGCTTAAACTAGG-ATGAAACTCCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGGC
777 TCCGTATGCTTAGACTAGGAATG-AACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GC
* * * *
633569 GGGCGCTCAGCCGGCTAGAGGGGCAGGATGCGGCAAGTCGGGGATC-GCCCGGTCCCTCCTCTGT
839 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCAGCCGGGTCCC-CCTCTGT
633633 G
902 G
* ** ** ** * *
633634 TGCTATCGAT-CTGCTTTCGCAACCCTTTGGTTTGGTCTGATCTTAGAGTGGGAATGAACTCCGT
1 TGCTGTCGATCCTGCTGCCGCAACCC-TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
633698 ATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAG
65 ATGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
* * *
633763 AGAGACGGGACGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATT
128 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
633828 TCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
193 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * ***
633893 AAGTTTCATGGCAAGACAACGCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGGG
258 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAATTTTTACGGTTCGGG
* * *
633958 ATTTTTTGAAATTTTTT-TGAAAGAGTTTTGGGCCCAAACTTGGT-GAACGTGATCCTTGTATTT
322 ATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTT
634021 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
386 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* *
634086 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGC
451 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
634151 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
516 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
634216 CAAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGAAACCCCAATG
581 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * * ** *
634281 CCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCGGAGAAAAAATGTAGCCCC
645 CCGCCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGA-CGAAG-AAAAATGCGGCACC
* ** * * * * * * *
634346 AGCACCTGCTGGAGCCAAGCATGTGCTGCCGCAACCTTCGTTTCGATTCGATCATAGACTGGGAA
707 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * *
634411 CGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
772 TGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
634476 GCGGGCGCTCAGCTGGCCAGAGGGACGGGATGCACAAGCCAGGGATCGGTCGTGTCCCCCTCTGC
837 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGT
*
634541 A
902 G
* ** * * * *
634542 TGCTGTCGATCCTGCTACCATAAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * ** * *
634607 TGCCTAAGCCAACTGACGGAACAAGCGGGTGGGTGGGCGCACAGGCAGGCACTACGCCGGCCAGA
66 TGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* *
634672 GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACAT-TTGCATATT
129 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATT
** ** * *
634736 TCTGAATGCCAATTACATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTACACGTG
193 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * **
634801 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAATTTTTTGCGGTTCCAG
258 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA-TTTTTACGGTTCGGG
* * * **
634866 ATTTTTTAAAA-TTCTTC-GAAAGGAGTTTTGGGCCCAAACTTAGCGGACGTGATCCTTGTATTT
322 ATTTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
634929 TTCTTAGCATGCATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
386 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
*
634994 AAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
451 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
635059 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTA
516 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
635124 CAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-CCGAACCCGAATG
581 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * *
635188 CCGCCGATCAGGTTTTCCGACGATGCTCTGACGATGGTGCCTCG--GTAGAGAAAAATGCAGCAC
645 CCGCCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CGACG-A-AGAAAAATGCGGCAC
* * * ** * *
635251 CAGCACATGCCTGAGCCCAGCATGTGCTGCAGCAACCCTCGGCCCAATCCGATCTTACATTGGGA
706 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
635316 ATGAAATCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
771 ATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
635381 TGCGGGTGCTCAGCTGGCCAGAGGGGCGGCATGCGGAAGCCGGGGATCGGCCGGGTCCACCTCTG
836 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTG
635446 TG
901 TG
* * * * *
635448 TGCTATCGATCCTGCTGCCGCAACCCT-TGATCCAGTCCGATCTTAGACTGAGAATGAACTCTGT
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
635512 ATGCGTAAGGCAACCGACGGAACGAGCAGGCTGGCGGGCGGGCGGGTGGGCATGCACTACGCCGG
65 ATGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGG-CGG---GCACTACGCCGG
635577 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
124 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
635642 TATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
189 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * ****
635707 CGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTATTT
254 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAATTTTTACGGTT
* * * * * *
635772 CAGGATTTTTTTAAATTTTTT-TGAAAGAGTTTTGGGCCCAAACTTGGTAGACGAGATCATTGTA
318 CGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
635836 TTTTTGTTGGCATACAAAAAAAAATTCAACTAAAAACTCCAAGTGTACAAGATTTTGTGACCATT
383 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATT
* *
635901 TGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
448 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
635966 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGGTTGATGAGGGATAGGGAGCCAATATAAGGGCCAA
513 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * ** *
636031 GTACTAGCACCCATCGCACATCATCCGTGCACAC-CCCCCCAG-CCCCCTGATCGTTAGAACCCT
578 GTACCAGCACCCATCGCACATCAT--GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * *
636094 AATGCCACCAGTCAGGTTCTCCGACGATGGTGCC--CCA--GT----G--G-AGAAAAATGCGGC
641 AATGCCGCC-GTCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCGACGAAGAAAAATGCGGC
* * * * *
636148 ACCAGCACATGCCCGAGCCAAGCATGTGCTACCGCAACCCTCGTTCTGATCCGATCTTAGACTGG
704 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
636213 GAATGAACTCCGTATGCTAAGAGTATGAATGAACTCCGTATGCCTAAGTCAATCCACGAAATGAG
769 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * ** * * *
636278 CGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCACAGGCCGGGGATTGGTCGGATCCCACTC
834 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTC
**
636343 TGCA
899 TGTG
* * * ** * * * *
636347 TGCTGTCGATCCTACTGCCGTAATCCTTGGTCTGATTCGATCTTAAACTGGGAATGAACTCC
1 TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
636409 ATTTGAAAAA
Statistics
Matches: 6340, Mismatches: 782, Indels: 256
0.86 0.11 0.03
Matches are distributed among these distances:
868 40 0.01
869 1 0.00
871 1 0.00
874 1 0.00
875 2 0.00
877 65 0.01
878 396 0.06
879 41 0.01
880 4 0.00
882 19 0.00
883 198 0.03
885 43 0.01
886 4 0.00
887 446 0.07
888 3 0.00
892 1 0.00
893 220 0.03
894 4 0.00
895 206 0.03
896 74 0.01
897 79 0.01
898 322 0.05
899 302 0.05
900 392 0.06
901 12 0.00
902 5 0.00
903 144 0.02
904 286 0.05
905 318 0.05
906 410 0.06
907 700 0.11
908 857 0.14
909 71 0.01
910 560 0.09
911 103 0.02
912 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
TGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAATTTTTACGGTTCGGGATTT
TTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTG
Found at i:638156 original size:904 final size:891
Alignment explanation
Indices: 636418--641181 Score: 6078
Period size: 903 Copynumber: 5.4 Consensus size: 891
636408 CATTTGAAAA
* *
636418 AAGATTTTTTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
636483 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGACGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * * *
636548 GACAATATAAGGGCCAAATACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCT
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * *
636613 GATCA-CTGGAACCCC-ATGCCGCCGGTCAGGTTCTCCGACGTTGCTCCGACGATGGTGTCCCAG
196 GATCATC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCCG
* * *
636676 CGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTCCTGCCGTAAACCACGGTCCAT
259 CGAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCG-CAACC-C-GTCCA-
* * *
636741 TCCGATCTTAGACTAGGAATGAGCTCCATATGCTTAGACTAGGAATGAAGTCCGTATGCATAAGT
320 T-CGATC-TAGACT-GGAA-GA-CTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * *
636806 CAACCAACGAAATGA-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGAT
380 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGAT
* **** * * *
636870 CGATCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTATTGCAACCCTCGGTCCAGT-TCGGTCTT
445 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCT-GATCTT
* *
636934 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGAC--G-GGCGGCGGGC
509 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGCGGCGGGC
* * * * *
636996 ACTACGTCGGCCAGAGAGACGGG-TACGTAAGCCGTGGATCGTTAGTGTGGTAGGTGGGTTTAGG
574 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
637060 CACATCTTCATATTTCTAC-ATGCCAATGCCATTTTTATGACTTGTAAATTCATATAATGGTCCC
639 CACATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCC
* *
637124 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCTAAA-
703 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
637188 TTTTTTACGATTCGAGATTTTTTAAAATTTTTTC-GACAGGAGTTTTGGCCCCAAACTTGGTAGA
768 TTTTTT-CGATTCGAGATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
637252 CATGACCCTTGTATTTTTGTTGGCATACAAAAAAAAATTCAACTAAAAACTCCAAGTGTAC
831 CCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
*
637313 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
637378 ACCTGTAAAATCTAAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* *
637443 GCCAATATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * *
637508 CAATCGTCGAAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG
195 CGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-G
* *** * ** * * *
637573 CGGAGAAAAATGTAGCACCAGCACCTGCTGGAGCCAAGCATGTGCTGCCGCAACCTTCATTTCGA
259 CGAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACC--C--GTCCA
*
637638 TTCGATCATAGACTGGGAACGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATGCCTAAGT
320 -TCGATC-TAGACT-GGAA-G-ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * **
637703 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGGCCAGAGGGACGGGATGCACAAGCCAGGGAT
380 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGAT
* * * ** * *
637768 CGGTCGTGTCCCCCTCTGCATGCTGTCGATCCTGCTACCATAAACCTCAGTCTGGTCTGATCTTA
445 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCTGATCTTA
* *
637833 GACTGGGAATGAACTCTGTATGCCTAAGCTAACCGACGAAACGAGCGGACGGGCGAGCAGGCGGG
510 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG-GC-GGCGGG
** * ** *
637898 CACTATACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTTTAGGTGGGTTTAA
573 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
637963 GCACATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAGTGGTCCC
638 GCACATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCC
* * *
638028 TTAAGCCTTCAGGTGTAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTCGAAAC
703 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
*
638093 TTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACC
768 TTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACC
*
638158 TGATCCTTGTATTTTTTTTGGCATGCACAAAATAATTCAGCTAAAAACTCCAAGTGTAC
833 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
* * * * *
638217 AAGATTTTGTGACCTTTTGAAAAAAGTGTCCCTATTTCAGGCACTTTACTGGCTACTGGTAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
638282 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * *
638347 GCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCGTGTGCACACACCCCCCTGGCCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC
* * * * **
638412 CGATCATCGAAA-CCCAACGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGA
195 CGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG-
* * * *
638476 CGAAGAAAAATATGGCACCAGCACATG-TCCAAGACCAGCATATGTTGCCGCAACCCTCGGTCCA
259 CGAAGAAAAATACGGCACCAGCACATGCT-CAAGCCCAGCATGTGCTGCCGCAA-CC-C-GTCCA
* * *
638540 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGACTGAACTCCGTATGCCTAAG
320 -T-CGATC-TAGACT-GGAA-G-ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * **
638605 TCAACCCATGAAACGAGCATGCGGGCGCTCAG-TCGGCCAGAGGGGCGGGATGCGCAAGCCGAAG
379 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCTGGGG
* * * * * * *
638669 ATCGGTCGGGTCCCCCTCTGAGTGCTACCAATCCTACTGCCATAACCTTCAGTCCGATCTGATCT
443 ATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCTGATCT
* *
638734 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGG-CTGGGCGGATGGGC
508 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GGGCGG--CGGC
* * * *
638798 GGGCACTACGCCGGCTAGAGAGAGGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTCGGTT
570 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * **
638863 TAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTGCATGG-TTGGC-AAATTCATACAATG
635 TAGGCACATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTT--CTAAATTCATACAATG
* *
638926 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
698 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * * ** * *
638991 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCACAAACCTGGT
763 GAAACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
639056 AGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
828 AGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
* * * * * *
639120 AAGATTTTGTGACCATTTGAGAAAACTGTCCCTATTTCAGACACTTTTATAGCTACTGGTAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
639185 ACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
*
639250 GCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCGGCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC-CCGGCCCC
* * ** * *
639315 TCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
193 CCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * ** * *
639380 GGCGAAGAAACATGCGGCACCAACACATGCCCAAGCTTAGCATGTGCTACCGTAACCC-T-CA--
258 -GCGAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCCGTCCATC
** *
639441 G---T---CT-G--G--TCCG-AT-CTTAGACCGGGAAGGAACTCCGTATGCCTAAGTCAACCCA
322 GATCTAGACTGGAAGACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
639493 CGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGGGGCAGAAAGTGCAAGTTGGGGATCGATCGG
387 CGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGG
* * * * *
639558 GTCCCCTCTCTACGTGCTACCGATCCTACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGC
452 GTCCCC-CTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCTGATCTTAGACTGG
*
639623 GAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC-A----A---GC-G-GGCGGGCACTACGC
516 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGCGGCGGGCACTACGC
* * *
639678 CGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGAGTGGTAGGTGGGTTTAGGCACATCT
581 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
639743 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
646 TCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
639808 TCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCAAGATTTTCAAAACTTTTTGCG
711 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTTCG
* * * ** * *
639873 GTTCGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTCACCCAAAACTTGGTAGACGTGATCCTT
776 ATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTT
* * *
639938 GTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
841 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
* *
639989 AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
640054 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* *
640119 GCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCT
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * *
640184 GATCACCAAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGT
196 GATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GC
* ** * *
640249 GAAGAAAAATACGGCACCAGCATATGCTTGAGCCCAGCATGTGCTGTCGCAACCC-T---T-GGT
260 GAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCCGTCCATCGAT
* * *
640309 C----C--G--G--TCCG-AT-ATTAGACT-GAGAATGAACTCCGTATG-CTTAGACAACCCACG
325 CTAGACTGGAAGACTCCGTATGCTTAGACTAG-GAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
640360 AAACGAGCGTGCGGGCGCTCAG-TCGGCCAGAGGAGCGGGATGCACAAGCTGGGGATCGATCGAG
389 AAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGG
* * *
640424 TCCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
453 TCCCCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
* * *
640489 ATGAACTCCGTATGCCTAAGCTAACTGACGAAACGAGCAGACGGGCGGGCGGGCGGGCGGGCACT
518 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AG-CGGACGGGC-GGC-GGCGGGCACT
** * * *
640554 ATACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAAGCAC
577 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
640619 ATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAGTGGTCCCTTAA
642 ATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
* * *
640684 GCCTTCAGGTGTAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTCGAAACTTTT
707 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
*
640749 TTCGATTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGAT
772 TTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGAT
*
640814 CCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCCAAGTGTAC
837 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
* * * * * *
640869 AAGATTTTGTGACCTTTTGAAAAAAATGTCCCTATTTCAGGCACTTTAATGGCTATTGGTAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
640934 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * *
640999 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCC-G-ACCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
** * * * * **
641062 GATCATCGGTAGCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGAC
196 GATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG-C
* * * * *
641127 GAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCC
260 GAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCC
641182 TCGATCCAGT
Statistics
Matches: 3407, Mismatches: 399, Indels: 143
0.86 0.10 0.04
Matches are distributed among these distances:
864 84 0.02
865 71 0.02
866 143 0.04
867 5 0.00
868 1 0.00
869 464 0.14
870 2 0.00
872 1 0.00
873 2 0.00
876 2 0.00
877 1 0.00
878 107 0.03
879 1 0.00
880 565 0.17
881 85 0.02
882 3 0.00
885 1 0.00
888 1 0.00
890 2 0.00
893 1 0.00
895 168 0.05
896 31 0.01
897 149 0.04
898 143 0.04
899 1 0.00
900 1 0.00
901 3 0.00
902 14 0.00
903 792 0.23
904 446 0.13
905 29 0.01
906 87 0.03
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGCG
AAGAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCCGTCCATCGATC
TAGACTGGAAGACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
CCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGCGGCGGGCACTACGCCGGCC
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTCTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTTCGATTCG
AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATT
TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTAC
Found at i:638576 original size:26 final size:26
Alignment explanation
Indices: 638547--638599 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
638537 CCAGTCCGAT
638547 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
638573 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
638599 C
1 C
638600 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:642272 original size:809 final size:804
Alignment explanation
Indices: 640457--643709 Score: 3704
Period size: 809 Copynumber: 3.9 Consensus size: 804
640447 CTGCTATCGT
* ** * *
640457 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAA
1 AACCCTTAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAA
* *
640522 CGAGCAGACGGGCGGGCGGGCGGGCGGGCACTATACCGGTCAGAGAGACGGGATGCGCAAGCCGT
66 CGAGC-GA-----------GCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
640587 GGATCGATAGGGTTGTAGGTGGGTTTAAGCACATCTTCATATTTCT-CTGTGCCAATGCCATTTT
119 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-GTGCCAATGCCTTTTT
* * * * * ** * *
640651 TATGGCTTCTAAATTCATACAGTGGTCCCTTAAGCCTTCAGGTGTAGTTTCATGGCAAGACGACT
183 TATGGCTTGTAAACTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATT
* * * * * * * * *
640716 CCTTTTCTATTTTTCATGATTTTCGAAACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTTGGA
248 CGTTTTCTATTTTTCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCA
* *
640781 AGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACA-AAACAA
313 AGGTGTTTTGGCCCCAAACTTGGT---CCTGA---TT-T-TTTTCTTT-GCATGCACATAAA-AA
* * * * *
640845 TTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAATGTCCCTATTTCAGG
368 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
640910 CACTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTT
433 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
640975 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
498 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * * * *
641040 GTGCGCATACCCCCC-GAC-CCCCGATCATCGGTAGCCTAATGTCGCCGGTCAGGTTCTCCGGCG
563 GTGCGCACACCCCCCGGCCACCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GC-
* *
641103 ATGCTCCGGGGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATG
626 --GCGCC---GATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * *
641168 TGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAG
686 TGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAG
* * * * *
641233 CCCACAAAACGAGCATACGGGTGCCCCTCTGTATGCTCCTGATCCTACTGCCGC
751 CCCACAAAACGAGCGTGCGGGTGCCCCTCTGGATGCTCCTAATCCTGCTGCCGC
*
641287 AA-CCTTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACTGACGAA
1 AACCCTT-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAA
* *
641351 ACGAGCGAGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
65 ACGAGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
641416 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAA
130 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAA
641481 ACTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTT
195 ACTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTT
*
641546 TTCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGCTGTTTTGGC
260 TTCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGC
* * * * *
641611 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCATA-AAACAATTTAGCTAAAAA
325 CCCAAACTTGGT---CCTGAT--TT-T-TTTCT-TT-GCATGCACATAAA-AATTCAGCTAAAAA
* * * * *
641675 CTTGAAGTGTACAAGATTTTGTGACCATTTCATAAAAGTGTCCTCATTTTAGACACTTTAATGGC
380 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
641740 TACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGAT
445 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
641805 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
510 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
*
641870 CCTCGGCC-CCCCGATCATCGGAAGCCCAATGCCGCCGGTCAGGTTCT-C-CG-G-CGATGGTGC
575 CC-CGGCCACCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGCGCCGATGGTGC
* * *
641930 CCCGACGAAGAAAAATGCGACACCAGCACATGCCTGAGTCCAGCATGTGCTGTCGTAACCCTCGA
639 CCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGA
641995 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAACGAGCGTGC
704 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAACGAGCGTGC
*
642060 GGGTGCCCCTCTGGATGCTGCTAATCCTGCTGCCGC
769 GGGTGCCCCTCTGGATGCTCCTAATCCTGCTGCCGC
* *
642096 AACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAA
1 AACCCTTAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAA
642161 CGAGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
66 CGAGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
642226 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAA
131 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAA
642291 CTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTT
196 CTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTT
642356 TCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCC
261 TCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCC
*
642421 CCAAACTTGGTCCTTATTTTTTTCTTTGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTA
326 CCAAACTTGGTCCTGATTTTTTTCTTTGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
642486 CAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
642551 AACCTGTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
642615 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCGGCCGC
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC-CCGGCCAC
* * * * *
642680 CCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAGGATGGTCCGGCGATGGTGCCCC
584 CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---G--CG--CGCCGATGGTGCCCC
* * * * ** *
642745 GACGAAGAAAAATGTGGCACCAGCACATGCCCGACCCCATCATGTGCTACCGCAACCCTCGATCT
642 GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCC
* * * * ** * *
642810 GGTTCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGACCGTGCGGC
707 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAACGAGCGTGCGG-
* * * * * *
642875 CGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCTAGGGAT-CGGTCGGGTCCCC
771 -G-T--GCC-CCT-------CTGGATGCTC---CTA---ATCCTG-C-TG-CCGC
* ** * * * ** * * *
642929 ATCTATGTGGTACCGATCCTGCTGTCACAACCCTCAGTCT-GGTCTG-A-T-CTTAGACTTGGAA
1 AAC--CCT--TA--G-TCC-G--GTC-CAA-TCTTAGACTGGGAATGAACTCCGTATACCT--AA
* ** * * * *** * * ** *
642990 TG--AACT-CCGTATGCCTAAGTCGA-CCGAC-AAAACGA-GCGGGCGGGAG-GGCGGGCACTAT
52 -GCCAACTGACG-A-AAC-GAG-CGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGG----AT
* *
643048 GCCGGCCAGAGAGACG-GGATGCGCA-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
108 G-C-G-C--A-AGCCGTGGAT-CG-ATAG-GGTGG-------------TAGGTGGGTTTAGGCAC
643111 ATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAACTCATACAATGTTCCCTCAA
151 ATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAACTCATACAATGTTCCCTCAA
*
643176 GCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACAATTTTCTAAACTTTT
216 GCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTCTAAACTTTT
*
643241 TACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCCCCAAACTTGGTCCTTATTTT
281 TACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCCCCAAACTTGGTCCTGATTTT
*
643306 TTTCTTTGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTG
346 TTTCTTTGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
643371 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATG
411 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
643436 CTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGAGAGGGGGCCAATATAA-GGCCAAGT
476 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
643500 ACCAGCACCCATCACACATCATGTGTGCACGCCCCCCTGGCCACCTCGATCGCTAC--AACCCCA
541 ACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GGCCACCCCGATC-AT-CGGAACCCCA
* * * *
643563 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCAGCGAAGAAAAATGCGGC
603 ATGCCGCCGGTCAGGTTCTCCG-C---G---CGCCGATGGTGCCCCGA-CGAAGAAAAATGCGAC
* * * ** *
643628 ACCAGCACATGCCCGAGCCCAGCATGGGCTG-CTGCAACACTCGGTCCTATCCGTTCTTAGACTG
660 ACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGATCCGGTCCGATCTTAGACTG
*
643692 GGAATGAACTCCTTATGC
724 GGAATGAACTCCGTATGC
643710 TTAGACTGGG
Statistics
Matches: 2143, Mismatches: 179, Indels: 167
0.86 0.07 0.07
Matches are distributed among these distances:
799 92 0.04
800 119 0.06
801 41 0.02
802 5 0.00
803 1 0.00
804 2 0.00
806 4 0.00
808 1 0.00
809 488 0.23
810 4 0.00
811 1 0.00
812 124 0.06
814 2 0.00
815 2 0.00
816 2 0.00
817 10 0.00
818 450 0.21
819 3 0.00
820 38 0.02
825 7 0.00
828 3 0.00
829 5 0.00
830 62 0.03
831 3 0.00
832 1 0.00
833 5 0.00
835 1 0.00
837 1 0.00
839 1 0.00
840 3 0.00
841 14 0.01
842 14 0.01
843 9 0.00
844 13 0.01
845 12 0.01
846 1 0.00
847 1 0.00
848 1 0.00
850 5 0.00
851 8 0.00
852 5 0.00
861 1 0.00
863 3 0.00
864 61 0.03
865 462 0.22
866 52 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (804 bp):
AACCCTTAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAA
CGAGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAA
CTCATACAATGTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTT
TCACGATTTTCTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCC
CCAAACTTGGTCCTGATTTTTTTCTTTGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCACCC
CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGCGCCGATGGTGCCCCGACGAAGAA
AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAACGAGCGTGCGGGTGCCCCTCT
GGATGCTCCTAATCCTGCTGCCGC
Found at i:643712 original size:26 final size:26
Alignment explanation
Indices: 643683--643735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
643673 CCTATCCGTT
*
643683 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
643709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
643735 C
1 C
643736 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:644593 original size:26 final size:26
Alignment explanation
Indices: 644557--644609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
644547 CTGGTCCAAT
* *
644557 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
644583 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
644609 C
1 C
644610 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:644871 original size:874 final size:868
Alignment explanation
Indices: 642114--646274 Score: 4972
Period size: 865 Copynumber: 4.7 Consensus size: 868
642104 GTCCGATCCA
* * * *
642114 ATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAAC--GA--GC-GA---GCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGGACGGGTG
642171 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGG
* *
642236 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAACTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
642301 GTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
642366 CTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCCCCAAACTTGG
260 -TAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
642431 T---CCTTAT-T-T-TTTTCTTT-GCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 TAGACATGATCTGTATTTT-TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
642489 GATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
642554 CTGTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
642618 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCGGCCGCCCC
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCC-CCCC
* * ** *
642683 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAGGATGGTCCGGCG-AT-GG-TGCCCC
581 GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCCCCGACGAATGGGCTG-CCC
** * ** * * * * * * * *
642745 GA-CGAAGAAAAATG-TGGCACCAGCACAT--GCCCGACCCCATCATGT-G-CTACCGCAACCCT
645 GAGCCCAG-CATGTGCTGCCA-CAAC-CCTCGGTCCTATCCAATC-T-TAGACT--GGCAA---T
* * * * * *
642804 CGATCT-GGT-TCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAC
700 -GAACTCCGTAT-G--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * ** *
642867 CGTGCGGCCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCTAGGGATCGGTCGGGTCCCCATC
761 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *
642932 TATGTGGTACCGATCCTGCTGTCACAACCCTCAGTCTGGTCTG
826 TACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCTG
* * * * *
642975 ATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCGACCGACAAAAC--GA--GCGGGCGGGAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGGACGGGTG
643036 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGG
* *
643101 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAACTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
643166 GTTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACAATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
643231 CTAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGCAAGGTGTTTTGGCCCCAAACTTGG
260 -TAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
643296 T---CCTTAT-T-T-TTTTCTTT-GCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 TAGACATGATCTGTATTTT-TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
643354 GATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
643419 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGAGAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
643484 CAATATAA-GGCCAAGTACCAGCACCCATCACACATCATGTGTGCACGCCCCCCTGGCCACCTCG
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCG
*
643548 ATCG-CTACAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCAG
582 ATCGTCGA-AACCCCAATGCCGTCGGTCAGG-T-T----C--T--T-CGACGA---TG--CCC--
* * ** *
643612 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCTGCAACACTCGGTCCTA
628 CGACG---AAT--GG-----G--C-TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCTA
** * *
643677 TCCGTTCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
680 TCCAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
643742 CAACCCACGAAACGAGTGTGCGGGCACTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
745 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
643807 TGGTCGGGTCCACCTCTGCATGCTGCCGATCCTACTACCCCAACCCTAGGTCTGGTCTG
810 CGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCTG
* * * * **
643866 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAATGAGTA-GGCGGGCGGAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG-AGGGCGGACGGGT
*
643930 GGGTC-GGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
65 GGG-CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGT
* * * *
643994 GGGTTCAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
128 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
644059 ATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATT
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
644124 TTTGAAACTTTTTGCGATTCGAGATTTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
258 TTT-AAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** * *
644189 TGGTAGACGGGATCCCTGTATTTTTGTTGGCATGCACCAAAAAAATTTAGCTAAAAACTTGAAGT
321 TGGTAGACATGAT--CTGTATTTTT-TTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGT
644254 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
382 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
644319 GAAAACTTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATA
447 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
644384 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAAGTGCGCACACCCCCGCCGGC
512 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGC
* * **
644449 CCCCTCGATTGTC-AGAACACCAATATCGTCGGTCAGGTTCTTCGACGATGCCCCGACG-AT-GG
576 CCCC-CGATCGTCGA-AACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCCCCGACGAATGGG
* * * *
644511 -TGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGT-CTGGTCCAATCTTAGGCTGGGAATGAA
639 CTGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCT-ATCCAATCTTAGACTGGCAATGAA
* * *
644574 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAATCGAGCGTCCGG
703 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * **
644639 GCGCTCAGCCGGCCAGAGGGGAGAGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGGGTGC
768 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * *
644704 TACCGATCCTACTGGCACAACTCTTGGTCTGGTCTG
833 TACCGATCCTACTGCCACAACCCTCGGTCTGGTCTG
* *
644740 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGTAAGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG--A--GGGCGGACG
* * *
644805 GGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT-CTGCAAGCCGTGGATCGATAGGGTGGTG
62 GGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATA-GGTGGTA
*
644869 GGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
125 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
644934 ACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
190 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
644999 ATTTTTGAAACTTTTTACGGTTCAGGATTTTTTCATATTTTTTCGGAAGGAGTTTTGG-CCCAAA
255 ATTTTT-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
645063 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAG
319 CTTGGTAGACATGAT-C-TGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
645128 TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGGC
381 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
645193 AGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGCGTGAGTTCTCAAGGTTTGAAGAGGGAC
446 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
645257 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGGC
511 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * *
645321 GCCCCCGATCGTTGTAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGC
576 -CCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGG-T-T-C-----T--T-CGACGA---TGC
* * **
645386 CCCGACGAAGAAAAATGCGGCACCAGCACATGGTCGAGCCCAGCATGTGCTACTGCAACCCTCGG
626 CCCGAC---G---AATG-GG---CTGC-C-----CGAGCCCAGCATGTGCTGCCACAACCCTCGG
* * * *
645451 TCCTGTCCAATCTTAGACTAGCAATGAACTCCATATGCTTACACTGGGAATGAACTCCGTATGCC
675 TCCTATCCAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
645516 TAAGTCAACACATGAAACGAACGTGCGGGCGCTCCA-CCGGCCAGAGGGGTGCGATGCGCAAGCC
740 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
645580 GGGTATCGGCCGGGTCCCCCTCTACGTGCTGCTGTTCCTACTGCCACAACCCTCGATCCGGTCTG
804 GGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCTG
* **
645645 ATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGGCGGACGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGGACGGGTG
645710 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG-GTGGTAGGTGG
* * * *
645775 GTTTAGGCACGTCTTCATATTTCTACGTGTCAATGCTATTTTTATGGCTTATAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
645840 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
645905 CAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGCTA-TTTTGTCCCCAAACTTG
260 -TAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAACTTG
* * *
645969 GTAGACATGATCGTTGAATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTA
323 GTAGACATGATC--TGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
646034 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTAAATGGCTACTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
646099 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
646164 GGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCGCACACCCCGCCGGCCCCC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCC
* * *
646229 CCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
579 CCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATG
646275 GTGCCCCGGC
Statistics
Matches: 2893, Mismatches: 281, Indels: 223
0.85 0.08 0.07
Matches are distributed among these distances:
861 46 0.02
862 1 0.00
863 2 0.00
864 35 0.01
865 445 0.15
866 52 0.02
870 1 0.00
872 30 0.01
873 11 0.00
874 322 0.11
875 125 0.04
876 33 0.01
877 35 0.01
878 209 0.07
880 2 0.00
882 4 0.00
883 7 0.00
886 13 0.00
889 2 0.00
890 6 0.00
891 171 0.06
892 7 0.00
893 11 0.00
894 6 0.00
895 208 0.07
896 46 0.02
897 18 0.01
898 18 0.01
899 5 0.00
900 3 0.00
901 243 0.08
902 158 0.05
903 85 0.03
904 47 0.02
905 245 0.08
906 166 0.06
907 44 0.02
908 30 0.01
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (868 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGGACGGGTG
GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACATGATCTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
TCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCCCCGACGAATGGGCTGCCCGAGCCC
AGCATGTGCTGCCACAACCCTCGGTCCTATCCAATCTTAGACTGGCAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACT
GCCACAACCCTCGGTCTGGTCTG
Found at i:645491 original size:26 final size:26
Alignment explanation
Indices: 645462--645514 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
645452 CCTGTCCAAT
*
645462 CTTAGACTAGCAATGAACTCCATATG
1 CTTACACTAGCAATGAACTCCATATG
* * *
645488 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGCAATGAACTCCATATG
645514 C
1 C
645515 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTAGCAATGAACTCCATATG
Found at i:647083 original size:26 final size:26
Alignment explanation
Indices: 647054--647105 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
647044 CCGGTCTGAT
647054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
647080 CTTAGACTGGGCATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
647106 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:647959 original size:26 final size:26
Alignment explanation
Indices: 647930--647982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
647920 CTGGTCTGAT
*
647930 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
647956 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
647982 C
1 C
647983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:648600 original size:876 final size:872
Alignment explanation
Indices: 646334--648750 Score: 3349
Period size: 889 Copynumber: 2.7 Consensus size: 872
646324 TGTGCTGCCG
*
646334 CAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * * * *
646399 ACGAGCGGGCGGGCGGGCACTACGTCGACCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
66 ACGGGCGGGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
646464 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATTCCATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
646529 ATTCATACAATGGTCCCTTAAGCCGTT-ACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATT
196 ATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
646593 TTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCA-TTTTG
260 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTG
* * *
646657 GCCCCAAAGTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
324 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAAAAATTCAGCTAAAA
*
646722 ATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGG
388 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGG
* *
646787 GTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
453 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
646852 TGAGGGATAGGGAACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACACC
518 TGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACC
* * * * *
646917 CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTGTCCGACGATGGTGCCCCG
583 CCCCAGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGA---TGCTCCG
* * * * *
646982 GCGAAGAAAAATACGGCATCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTTGGTCCG
645 GCGAAGAAAAACACGGCA-CAGAAAAT---CGAG--C-G-ATGTGCTGCCGTAACCCTCGGTCCG
* * *
647047 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGCATGAACTCTGTATGGCTAAG
702 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAG
* *
647112 TCAACCCACGAAACGAGCCTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
767 TCAACCCACGAAACGAGCCTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
** * * * * **
647177 TCGGTTGGGTTCCCCTCTGCGTGCTGCCAATCCTTCTACTG
832 TCGGCCGGGTCCCCCACTCCGTGCTGCCAATCCTACTACCA
* * * * *
647218 CAACCCTTGGTCTGGTCCGATCTTAGAGTGGGAATGCACTCCGTATGCCTAAGCCAACCGAGGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG--
* * * *
647283 ACAACCGGGCGGACGGGCGGGCAG-TATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGTTCG
64 A-AA-CGGGCGGGCGGGCGGGC-GCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
647347 ATAGGATGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCTTGCCAGTGCCATTTTTATGGCT
126 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
647412 TGTAAAATCAAACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTCTC
191 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * **
647477 TATTTTTCATGATTTTCAAAAATTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGCTGT
256 TATTTTTCATGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * **
647542 TTTGGCCCCAAACTTGGTAGACGTGATCGTTGAATTTTTGTTGGCATGCAAAAAGAAATTCAAAT
320 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAA-AAATTCAGCT
* *
647607 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTAA
384 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAA
647672 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
449 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * * *
647737 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGTACATCATGTATGCA
514 TTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCA
* *
647802 CAACCCCCCCAGCCCCCTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCT
579 C-A-CCCCCCAGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCT
* * * **** * *
647867 CTGGTGATG-GTGCCCCGGCGA-AGAAAAAT-G-G-G-TGTGCTGCCGTAACCCTCGGTCTGGTC
642 CCGGCGAAGAAAAACACGGC-ACAG-AAAATCGAGCGATGTGCTGCCGTAACCCTCGGTCCGGTC
* *
647926 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTTTGTATGCCTAAGTCA
705 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCA
* * * * * *
647991 ACCCATGAAACGAGCGTACGGGCGTTTAGCTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
770 ACCCACGAAACGAGCCTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
* * *
648056 GCCGGGTCCCCCACTCCGTGTTGTCGATCCTACTACCA
835 GCCGGGTCCCCCACTCCGTGCTGCCAATCCTACTACCA
* * * *
648094 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCTTATGCCTAAGCCAATTGACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
*
648159 ATGGGCGGGTGGGCGGGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGA
66 A----C----GGGCGGGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
648224 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
123 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
648289 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
188 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * *
648354 TTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTCGGGGTTTTTTAAAATTTTTTCGGAAGGA
253 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
** * *
648419 GTTTTGGAACCAAACTTGGTAGACATGATCCTTTTATTTTTCTTGGCATGCACAAAAAATTCAGC
318 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAATTCAGC
*
648484 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
383 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTA
* * * *
648549 ATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGTGTGTGGGTTCTCGAGG
448 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
648614 TTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGC
513 TTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGC
* * *
648679 ACACCCCCCAGGCCCCCTCGATCGCAGGAACCCCAATGCTGCCGGTCAGGTTCTCTGGCGATGCT
578 ACACCCCCCA-GCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCT
648744 CCGGCGA
642 CCGGCGA
648751 TGCTCCGGCG
Statistics
Matches: 1349, Mismatches: 162, Indels: 51
0.86 0.10 0.03
Matches are distributed among these distances:
873 2 0.00
874 1 0.00
876 231 0.17
877 55 0.04
878 190 0.14
879 88 0.07
880 186 0.14
882 1 0.00
883 1 0.00
884 57 0.04
886 3 0.00
887 11 0.01
888 194 0.14
889 277 0.21
890 1 0.00
891 51 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (872 bp):
CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
ACGGGCGGGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCC
CAGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGGCGAAG
AAAAACACGGCACAGAAAATCGAGCGATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
GAGCCTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCC
CACTCCGTGCTGCCAATCCTACTACCA
Found at i:648751 original size:11 final size:11
Alignment explanation
Indices: 648735--648763 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
648725 CAGGTTCTCT
648735 GGCGATGCTCC
1 GGCGATGCTCC
648746 GGCGATGCTCC
1 GGCGATGCTCC
648757 GGCGATG
1 GGCGATG
648764 GTGCCCCGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.31, G:0.41, T:0.17
Consensus pattern (11 bp):
GGCGATGCTCC
Found at i:648880 original size:26 final size:26
Alignment explanation
Indices: 648844--648896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
648834 CTGGTCTGAT
*
648844 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
648870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
648896 C
1 C
648897 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:649623 original size:26 final size:26
Alignment explanation
Indices: 649587--649639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
649577 CTGGTCTGAT
*
649587 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
649613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
649639 C
1 C
649640 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:649776 original size:743 final size:743
Alignment explanation
Indices: 648115--650392 Score: 3569
Period size: 743 Copynumber: 3.1 Consensus size: 743
648105 CTGGTCTGAT
* * ** * ** ** * *
648115 CTTAGATTGGGAATGAACTCCTTATGCCTAAGCCAATTGACGAAATGGGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCAGGTGGGCAGG
* * * * *
648180 CGGGCGCTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACCACGCCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
648245 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
648310 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
648375 AAACTTTTTACAGTTCGGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACCAAACTTGGTA
261 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTA
*
648440 GACATGATCCTTTTATTTTTCTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
648504 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
648569 CTGTAAAATCTCAAATGCTCTTTATGGGTGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGAGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
648634 CAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCTCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCAGGCCCCCCCG
* * *
648699 ATCGCAGGAACCCCAATGCTGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGCTCCGGCGATG
584 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC---C-A-------ACGATGCTCCGGCGATG
*
648764 GTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
638 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
648829 TCGCTCTGGTCTGATCTTAGACTGGGAATGAAATTCGTATG
703 TCGCTCTGGTCTGATCTTAGACTGGGAATGAAATTCGTATG
648870 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCAGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCAGGTGGGCAGG
648935 CGGGCACCACGCCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACCACGCCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
649000 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * ** * *
649065 TCCCTTAGGCCTTCACATGAAGTTTTGTGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
649130 AAACTTTTT-CGGTTTGAGATTTTTTAAAATATTTTCGGAAGCAGTTTTGGCCCCAAAGTTGGTA
261 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTA
* * *
649194 GACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
649259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGAAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
649324 CTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
649389 CAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCAGCCCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCAGGCCCCCCCG
* *
649453 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTTCGACGATGGTGCCCCGACG
584 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACG
649518 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGCTCTGGTC
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGCTCTGGTC
649583 TGATCTTAGACTGGGAATGAAATTCGTATG
714 TGATCTTAGACTGGGAATGAAATTCGTATG
*
649613 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAACGGGCAGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCAGGTGGGCAGG
*
649678 CGGGCACCACACCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACCACGCCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
649743 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
649808 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
** *
649873 AAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAACTTGGTAG
261 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAG
* * ** *
649938 ACATGATCCTTGTATCTTTCTTGGCAGGCACAAAAAAATTTGGCTAAAAACTCGAAGTGTACACG
326 ACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
650003 ATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
650068 TATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGGGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
650133 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-AACACCCCCTGGCCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAC-CCCCCAGGCCCCCCCGA
*
650197 TCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGA
585 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * ** *
650262 AGAAAAATGCGGCACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGTAACCCTCATTCCGAG-C
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGCTCTG-GTC
* * * *
650326 TGAT-TTAGACTGGTAATGAACTCCGCATG
714 TGATCTTAGACTGGGAATGAAATTCGTATG
*
650355 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
650393 CATGAAACGA
Statistics
Matches: 1410, Mismatches: 108, Indels: 23
0.91 0.07 0.01
Matches are distributed among these distances:
742 60 0.04
743 715 0.51
744 69 0.05
750 1 0.00
751 1 0.00
754 155 0.11
755 409 0.29
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (743 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCAGGTGGGCAGG
CGGGCACCACGCCGACCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCAGGCCCCCCCGAT
CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGCTCTGGTCTG
ATCTTAGACTGGGAATGAAATTCGTATG
Found at i:650359 original size:26 final size:26
Alignment explanation
Indices: 650330--650381 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
650320 CCGAGCTGAT
*
650330 TTAGACTGGTAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
*
650356 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
650382 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:651255 original size:26 final size:26
Alignment explanation
Indices: 651219--651271 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
651209 CCGGTCTGAT
651219 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
651245 CTTAGACTGGGTATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
651271 C
1 C
651272 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:652863 original size:26 final size:26
Alignment explanation
Indices: 652834--652886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
652824 CTGGTCCGAT
652834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
652860 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
652886 C
1 C
652887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:655979 original size:888 final size:878
Alignment explanation
Indices: 653801--656652 Score: 3670
Period size: 888 Copynumber: 3.2 Consensus size: 878
653791 GCGCTCAGCC
* * * ** * * * ** *
653801 GGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCAATTGTGCTACAGCAACCCTTTGTCCGGTCTG
1 GGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCG
* * * *
653866 ATCCTAGGCTGGGAATGAACTCTGTATGCCTAAGCTAACCGAAGAAACGAGCGGGCGGGCGGGCA
65 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCA
* * *
653931 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTAGGC
130 CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGC
* * *
653996 ACATCATCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
195 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
654061 GAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
260 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* *
654126 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
325 TTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * *
654191 ATCCTTGTATTTTTGTTGGCACGCCCAAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTT
390 ATCCTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
654256 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAA
454 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
654321 AATGTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAACAT
519 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
** * *
654386 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCGGGCCCCCCGATCACCG
584 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCGATCGCCG
* ** * * *
654451 GAACCTTAATGCTGTCGGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGGTGAAGAAAA
649 AAACCCCAATACCGTCGGTCAGGTTCTCC-G----G---C---GATGGTGCCCCGGCGAAGAAAA
* *
654516 ATGCGGCACCAGCACATGCCCGAGCCCATCATGTGCTGCCGCAA-CC-C-T-CAGTCCG---TT-
703 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCAGTCCGATCTTA
654573 --CT--G-AT---CT---TA-----GACTGGGAATGAACTCCGTT--C-AA--C-A-CACGAAAC
768 GACTGGGAATGAACTCCGTATGCTTGACTGGGAATGAACTCCGTTGCCTAAGTCAACCACGAAAC
* * *
654615 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGCGATGCGCAAGTT
833 GAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * * * * * *
654661 AGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGTTGCCGCAATCGTCAGTCCGGTCTG
1 GGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCG
* * *
654726 ACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTGGGCG
65 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC-----GG-GCG-G
* *
654791 GCTGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
123 GC-GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCG
* * *
654856 GTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAAT
187 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
654921 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACAATTTT
252 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * * *
654986 TGAAACATTTT-GGGGTTCACGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGTCCCAAACTTG
317 TAAAACTTTTTACGGTTTGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
655050 GTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTA
381 GTAGACA-TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
655114 CAAGATTTTGTGACTATTTTAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
445 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
655179 AACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGG
510 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
*
655244 GGCGAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCACCCCCTCGGC
575 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA--C-CCCCC-CGGC
* * *
655309 CCGCCCGATCGTCGAAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACAAAGA
636 CC-CCCGATCGCCGAAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGA
* * *
655374 AAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCCCAACCCTCGGTCCGGTCCGAT
700 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCAGTCCGAT
655439 CTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACGC
764 CTTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCCGT-TGCCTAAGTCAAC-C
* *
655504 ACGAAACGAGTGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT
826 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * *
655557 GGGGATCAGGTGGGTCCCCCTTTGCATGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGTCCG
1 GGGGATC-GGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCG
* *
655622 ATCTTTGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCA
65 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCA
** *
655687 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTCGGTTTAGGC
130 CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGC
655752 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCCA-ACAATGGTCCCT
195 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT-CATACAATGGTCCCT
* * * *
655816 TAAGGCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTGTTTTTCACGATTTTCAAAACT
259 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* *
655881 TTTTACGGTTTGAGAGTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACCT
324 TTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* * *
655945 GATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTTAAAACTCAAAGTGTACAAGATTT
389 GATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
656010 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
453 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
656075 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAACGTTTGATGAGGGATAGGGAGCCAATA
518 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
656140 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTACACACCCCCCCGACCCCCCGATCGCC
583 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCGATCGCC
* * *
656205 GAAACCCCAATGCCACCAGTCAGGTTCTCCGACGATACTCCGGTGATGGTG-CCCGTGCGAAGAA
648 GAAACCCCAAT---ACC-GTC-GG---T-C-A-GGTTCTCCGGCGATGGTGCCCCG-GCGAAGAA
* *
656269 AAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATC
701 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCAGTCCGATC
** * *
656334 TTAGACTGGGAATGAAGGCCGTATGCTTAGACTGGTAATGAACTCCGCTTGCCTAAGTTAACCCA
765 TTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCCG-TTGCCTAAGTCAA-CCA
* * * * * *
656399 CGAAACGAGCGTGCGAGCGCTCAACCAGCCATAGGGGCAGGATGCACAAGCC
827 CGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT
* * *
656451 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCCG
1 GGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCG
* * *
656516 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGTGGGTGGGCGGGCG
65 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGA----GCGGGCGGGCG
* * * * *
656581 GGCACTACACCGGCCAAAGAGACGGGATGTGCAAGCCGTGAATCGATAGGGTGGTTGGTCAGTTT
126 GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTT
656646 AGGCACA
191 AGGCACA
656653 ACTTGAAGAT
Statistics
Matches: 1732, Mismatches: 186, Indels: 110
0.85 0.09 0.05
Matches are distributed among these distances:
860 99 0.06
861 59 0.03
862 2 0.00
863 1 0.00
864 1 0.00
865 3 0.00
866 8 0.00
867 206 0.12
868 257 0.15
869 3 0.00
870 5 0.00
871 6 0.00
872 35 0.02
874 1 0.00
875 2 0.00
878 2 0.00
881 2 0.00
883 20 0.01
884 5 0.00
885 5 0.00
886 4 0.00
887 75 0.04
888 400 0.23
889 10 0.01
890 3 0.00
891 5 0.00
892 1 0.00
893 9 0.01
894 280 0.16
895 2 0.00
896 145 0.08
897 2 0.00
898 74 0.04
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (878 bp):
GGGGATCGGTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAC
TACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCA
CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
TTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
TCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCGATCGCCGAA
ACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCAGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTGACTGGGAATGAACTCCGTTGCCTAAGTCAACCACGAAACGAGCGTGCGGGCG
CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT
Found at i:656839 original size:210 final size:206
Alignment explanation
Indices: 656461--656845 Score: 511
Period size: 210 Copynumber: 1.8 Consensus size: 206
656451 GGGGATCGGT
** * *
656461 CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACT
1 CGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACA
* * * *
656526 GGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGTGGGTGGGCGGGCGGGCACTACAC
66 GGGAATGAACTCCGTACGCCTAAGCCAACAGACGAAACGAGGGGGCGGGCGGGCGGGCACTACAC
* * *
656591 CGGCCAAAGAGACGGGATGTGCAAGCCGTGAATCGATAGGGTGGTTGGTCAGTTTAGGCACAACT
131 CAGCCAAAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGTTGGTCAGTTTAGGCACAACT
656656 TGAAGATTTGA
196 TGAAGATTTGA
* * * * *
656667 CGGGTCCCCCTCTATGTGCCTACCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGAC
1 CGGGTCCCCCTCTACGTG-CTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAC
* * * *
656732 AGGGAATGAACTCTG-ACGCTTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGTCGGGCAC
65 AGGGAATGAACTCCGTACGCCTAAGCCAACAGACGAAACGA--GGG-GG-CGGGCGGGCGGGCAC
* * *
656796 TACGCCAGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
126 TACACCAGCCAAAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGT
656846 AGGTGGGCTT
Statistics
Matches: 151, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
206 38 0.25
207 52 0.34
208 2 0.01
209 2 0.01
210 57 0.38
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (206 bp):
CGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACA
GGGAATGAACTCCGTACGCCTAAGCCAACAGACGAAACGAGGGGGCGGGCGGGCGGGCACTACAC
CAGCCAAAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGTTGGTCAGTTTAGGCACAACT
TGAAGATTTGA
Found at i:657496 original size:26 final size:26
Alignment explanation
Indices: 657445--657497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
657435 CTGGTCTGAT
* **
657445 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
657471 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
657497 C
1 C
657498 CTATGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:658369 original size:26 final size:26
Alignment explanation
Indices: 658333--658385 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
658323 CTGGTCCAAT
*
658333 CTTAGACTGGGAGTGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
658359 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
658385 C
1 C
658386 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:658556 original size:26 final size:26
Alignment explanation
Indices: 658518--658570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
658508 CCGGTCTGAT
*
658518 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
658544 CTTAGAC-AGGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
658570 C
1 C
658571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:658676 original size:185 final size:185
Alignment explanation
Indices: 658309--658729 Score: 509
Period size: 185 Copynumber: 2.3 Consensus size: 185
658299 GCATGTGCTG
* * * * * *
658309 CCGCAACCATTGGTCTGGTCCAATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAGGGAATG
* *
658374 AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGTGTACGGGCACTCAACCGACCAGAGGGGCGG
66 AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCACTCAACCGACCAAAGGGGCGG
* * * ** * * *
658439 GATGCGCAAGCCAGGGATCGATCGGGTCTTCTTTTACATGCTACCGATCCTACTA
131 GATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
* **
658494 CCGCATCCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAGGGAATG
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAGGGAATG
* * * * * *
658559 AACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTACGGGCATTCAGCCGGCCAAAGGGGCGG
66 AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCACTCAACCGACCAAAGGGGCGG
* * * *** * *
658624 GATGCATAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGTTGCCAATCCTACTA
131 GATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
* * * *
658679 CTGCAACCCTCGGTCTGGTCCAATTTTAGACTAGGAATGAACTCCGTATGC
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGC
658730 CTAAGCCAAC
Statistics
Matches: 196, Mismatches: 40, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
185 196 1.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (185 bp):
CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAGGGAATG
AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCACTCAACCGACCAAAGGGGCGG
GATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
Found at i:659436 original size:26 final size:26
Alignment explanation
Indices: 659400--659452 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
659390 CTGGTCCAAT
*
659400 CTTAGACTGGGAGTGAACTTCA-TATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
659426 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
659452 C
1 C
659453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:659743 original size:185 final size:185
Alignment explanation
Indices: 659376--659794 Score: 453
Period size: 185 Copynumber: 2.3 Consensus size: 185
659366 GCATGTGCTG
* * * * * * *
659376 CCGCAACCATTGGTCTGGTCCAATCTTAGACTGGGAGTGAACTTCATATGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATACTTAGACTGGGAATG
* * * *
659441 AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGTGTGCGGGCACTCAACCGACCAGAGGGGCGG
66 AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACAGGCACTCAACCGACCAAAGGGGCGG
* * * ** * * *
659506 GATGCGCAAGCCAGGGATCGATCGGGTCTTCTTTTACATGCTACCGATCCTACTA
131 GATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
* **
659561 CCGCATCCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATACTTAGA-TGGGGAAT
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATACTTAGACT-GGGAAT
* * * * * *
659625 GAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTACAGGCGCTCAGCCGGCCAAAGGGGCG
65 GAACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACAGGCACTCAACCGACCAAAGGGGCG
* * * *** * * *
659690 GGATGCATAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGTTGCCAATCCTACTG
130 GGATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
* * * *
659746 CTGCAACCCTCGGTCTGGTCCAATTTTAGACTAGGAATGAACTCCGTAT
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTAT
659795 GCCTAAGCCA
Statistics
Matches: 189, Mismatches: 44, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
184 1 0.01
185 188 0.99
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (185 bp):
CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATACTTAGACTGGGAATG
AACTCAGTATGCCTAAGTCAACCCAAGAAACGAGCGTACAGGCACTCAACCGACCAAAGGGGCGG
GATGCACAAGCCAGGGATCGACCGAGTCCCCCTCTACATGCTACCAATCCTACTA
Found at i:661155 original size:26 final size:26
Alignment explanation
Indices: 661119--661171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
661109 CCGGTCCGAT
*
661119 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
661145 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
661171 C
1 C
661172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:662051 original size:26 final size:26
Alignment explanation
Indices: 662022--662074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
662012 CCGGTCTGAT
*
662022 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
662048 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
662074 C
1 C
662075 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:662814 original size:898 final size:898
Alignment explanation
Indices: 661072--667438 Score: 8448
Period size: 898 Copynumber: 7.1 Consensus size: 898
661062 TAGCAGAAAA
* ** * *
661072 ATGCCCGAGCCCAACATGTGCTGCCAAAACCCTCGGTCCGGTCCGATCTTAGTCTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
661137 TCTGTATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * ** *
661202 CACTCAGCTGGCCAGAGGGGTGGGATGCGCAAGATGGGGATCG-GTCGGGTCCCCCT-TCGCGTG
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCT-GCGTG
** * * * * * * ** * *
661265 CTGTCGATCCTACTACCCCAGCCCTCGGTCCGATCCCATCTTAGGCTGGGAATGAACTCTGTATG
195 CTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
661330 CCTAAGCCAACTGACGAAACGAGCGAGCGGGCAGGCGGGCGGGCATTACCCCGGCCAGAGAGACG
260 CCTAAGCCAACCGACGAAACGAGCG-GCGGGCA----GGCGGGCACTACGCCGGCCAGAGAGACG
*
661395 GGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
320 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
* *
661460 TCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
385 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * **
661525 ATGGCAAGACGACTGGTTTTCTATTTTTCACAATTTTTTAAACTTTTTTTGGTTCGGGATTTTTT
450 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* * * * * *** ** *
661590 TAAATTTTTTCAGAAGGAGTTTAGGACCCAAACTCGACGGACACGATCCTTGTATTCTTGTTGGC
515 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
661655 ATGCACAAAAAAATTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTT
580 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
661720 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
645 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
661785 GGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACT
710 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * *
661850 CATCGCACATCTTCTACGTACACCCCCCGGCCCCTTCGATCGTCGGAACCCCAATGCCGCCGGTC
775 CATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCATCGAAACCCCAATGCCGCCGGTC
* *
661915 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACAC
839 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * ** *
661975 ATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTTAGTCCGGTCTGATCTTAGATTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
662040 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
662105 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGAGGATCGACT-GGGTCCCCCTCTGTGTGC
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGC
* ** * ** * *
662169 TACCGATCCTACTGCCATAACCCTCTATTTGGTCTGATCTCAGACTAGGAATGAACTCCGTATGC
196 TACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
662234 CTAAGCCAACCGACGAAACGAGCGGTCGGGCAGGCGGGTACTACGTCGGCCAGAGAGACGGGATG
261 CTAAGCCAACCGACGAAACGAGCGG-CGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
662299 CGCAAGCCGTGGATCAATAGGGTAGTAGGTGGGTTTAGGTACATATTCATATTTCTGCGTGCCAA
325 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * *
662364 TGCCATTTTTATGGCTTCTAAATTTATAAAATGGTCCCCTTAAGCCTTCACGTGAAGTTTCATGG
390 TGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * **
662429 CAAGACGACTCATTTTCTATTTTTCATGATTTTCGAACCTTTTTGCAGTTCAAGATTTTTTAAAA
454 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
* * * *
662494 TTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTT-TTGGCATGG
519 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
662558 A-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
584 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
662622 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
649 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
662687 TGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATC
714 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
662752 GTACATCATGTGCCCACACCCCCGCGGCCCCCCGATCATCGAAACCCCAATTCCGTCGGTCAGGT
779 GCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGT
* ** *
662817 TCTCTGGCGATTTTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
843 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
662873 ATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGT-CTGTTTCGATCTTAGACTGGGAAGGAA
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAA
* * *
662937 CTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGT
65 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *
663002 GTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GTCGGGTCCCCCTCTGCGTG
130 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTG
** * *
663066 CTGTCGATCCTGCTGCCGCAACCCTC-AGTTCGGT-TCGATCTTAGACTGGGAATGAACTGTC-T
195 CTACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAACT-CCGT
* * *
663128 ATGCTTAAGCCAACCGATGAAACGA---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
257 ATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
663190 ATGCGCAAGCTGTGGAGCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACGTGC
322 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
*
663255 CAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
387 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * ** *
663320 TGCAGGACGACTCGTTTTCTATTTTTCACAATTTTCCAAACCTTTTGCGGTTCGGGATTTTTTAA
452 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
*
663385 AATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCATT-TATTTTTGTTGGCA
517 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCA
* *
663449 TGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
581 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
663514 CCCGATTTTAGACACTTTAATGGCTACCAGG-AGCAAACCTGTAAAATCTCAAATGCCCTTTAAG
646 CCCCATTTCAGACACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
663578 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACC
710 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
663642 CATCGTACATCATGTGCTCACACCCCTCGGCCCCCTCGATC-TCCAGAACCCCAATGCCACCGGT
775 CATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGA-AACCCCAATGCCGCCGGT
* * * ** * * *
663706 CAGGTCCTCCGGTGATGCTCTGATGATGGTGCCCCGACAAAGATAAATACGGCACCAGCAC
838 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
663767 ATGCCCGAGCCCAGCATTTGCAGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
663832 TCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCATGAAACCAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
663897 CGCTTAGCTGGCCAGAGGGGCAGGATGCACAAGCCGGAGATCGA-TCGGGTCCCCCTCTGCGTGC
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGC
* * * ** * *
663961 TACCGATCCTGTTGCTGCAACCCTCGGTTTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGC
196 TACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *** * *
664026 CTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCTATCACTACGCCGACTAGAGAGACGGGATG
261 CTAAGCCAACCGACGAAACGAGC-GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
664091 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAA
325 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * * *
664156 TGCCATTTTTGCT-GCTTTTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAG
390 TGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
664220 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGTGGTTTGGGATTTTTTAAAA
454 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
* *
664285 TTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGC
519 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
664350 ACAAAAAAATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCC
584 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
664415 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
649 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
664480 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATC
714 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
664545 GCAAATCATGTGCGCAGACCCCACTCGCCCCCCCGATCGTCGAAACCCCAATCCCGCCGGTCAGG
779 GCACATCATGTGCGCACACCCC-C-CGGCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGG
* * *
664610 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAG
842 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* *
664667 ATGCCTGAGCCCAGCATGTGCTGCTGCAA----C---CC--TCTG-TC-----C---G-AT---C
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
664710 T--G-AT-CTTAGACTGGGAATCAACTCTGTATACCTAAGTCAACCCATGAAACGAACGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
664771 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-CGGGTCCCCCTCTGCATGC
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGC
* * * * * *
664835 TACCGAGCCTGCTACCGCAACCTTC-AGTCTGGTCTGATCTTAAACTAGGAATGAACTCCGTATG
196 TACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
664899 ACTAAGCCAACCGACAAAACGAGCGGAC--G--GGCGGGCACTATGCCGGCCAGAGAGACGGGAT
260 CCTAAGCCAACCGACGAAACGAGCGG-CGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
664960 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
324 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
* * *
665025 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGC
389 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
665090 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTAAAA
454 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
665155 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
519 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
665220 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCC
584 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
665285 CATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGG
649 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
665350 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
714 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * *
665415 GCACATCATGTGCGCACACCCCCCGGCCACCTCGATCGCCGGAACCCCAATGCCGCGGGTCAGGT
779 GCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGT
* * * * * ** *
665480 TCTCCGGCGATGGTTCGGTGATGGTGACCCGACGAAGGAAAATGCAACACCAGCAA
843 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
665536 ATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGCCCGATATTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
665601 TCCGTTTGCTTAGACTGGTAATAAACTCTGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * **
665666 CTCTCAGCCGGCCAGTGGGGCGGGATGTGCAAGTTGGGGA-CTGAC-CGGGTCCCCCTCTGCGTG
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACTCGGGTCCCCCTCTGCGTG
* * * *
665729 CTGCCAATCCTGCTGCCGCAACCCTCGATCCGGTCTGTTCTTAGACTGGGAATGAACTCCATATG
195 CTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
665794 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCACCGGCCAAAGAGACG
260 CCTAAGCCAACCGACGAAACGA----GC-GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
665859 GGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCAT
320 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
665924 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
385 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
665989 ATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCT-AATCTTTTTGCGGTTC-AGATTTTT
450 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTGCGGTTCGGGATTTTT
* * * ** *
666052 TAAAATTTTTTTGAAAGGACTACTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
514 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
666117 CATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGT
579 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
666182 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
644 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
666247 GGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
709 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
666312 CCATCGCACATCATCTACGCACACCCCCCGGCCCCTCCGATCA-CCAGAACCCCAATGCCGCCGG
774 CCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCATCGA-AACCCCAATGCCGCCGG
* ** * * * **
666376 TCAGGTTCTCCGGTGATGCTTTGGCGACGGTGCCCCGATGAAGAAAAATGTGGCACCAGTGC
837 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
666438 TTGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTGCGGTCTGATCCGCTCTTAGACTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * *
666502 CTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTACGG
65 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* ** *** * * * *
666567 GCGCTCAGCCGGCCAGAGGGGCGGAATGCATAAGCCAATGATCG-GTCGGGTCCTCCTCTACGTA
130 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTG
* * * * * * ** *
666631 CTATCGATCTTGTTGCCGGAACCCTCGGTACGGTCAAATCTTAGACTGGGAATGAACTCCATATG
195 CTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** **
666696 CCTAAGCCAACCGATAAAACGAGCGAGCCGACGGGC-GGCCGGGCACTACGCTTGCCAGAGAGAC
260 CCTAAGCCAACCGACGAAACGAGC--G--G-CGGGCAGG-CGGGCACTACGCCGGCCAGAGAGAC
* *
666760 GGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACG
319 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* *
666825 TGCCAATGGCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
384 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
666890 CATGGGAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
449 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * * * *
666955 TAAAATTTTTTTGGAAGGACTTTTGGCCCCAAAGTTGGTAGATGTGATACTTGTATTTTTGTTGG
514 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * *
667020 CATGCACAAAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGGGACCATTTGAAGAAATT
579 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * * *
667085 GTCCACATTTTAGACATTTTGATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA
644 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
667150 GGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCAC
709 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
667215 CCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCCGACCGA-CGGAACCCCAATGCCACCGG
774 CCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATC-ATCGAAACCCCAATGCCGCCGG
* *
667279 TCATGTTCT----C-A------GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
837 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
** * ** *
667330 ATGCCCGAGCCCAGCATGTGCTGCCGCAACTGTTGGTCCAATCTAATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
667395 TCCGTATGCTTAGACTGGGAATGAACTCCATCTACCTAAGTCAA
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
667439 ATGCTCTTTA
Statistics
Matches: 4829, Mismatches: 545, Indels: 191
0.87 0.10 0.03
Matches are distributed among these distances:
868 4 0.00
869 105 0.02
870 475 0.10
873 3 0.00
874 184 0.04
875 2 0.00
876 3 0.00
878 4 0.00
879 1 0.00
881 2 0.00
882 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
888 2 0.00
890 2 0.00
891 6 0.00
892 130 0.03
893 147 0.03
894 483 0.10
895 345 0.07
896 5 0.00
897 12 0.00
898 952 0.20
899 176 0.04
900 226 0.05
901 21 0.00
902 781 0.16
903 742 0.15
904 12 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (898 bp):
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGC
TACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCT
CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
Found at i:662956 original size:26 final size:26
Alignment explanation
Indices: 662920--662972 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
662910 CTGTTTCGAT
*
662920 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
662946 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
662972 C
1 C
662973 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:663843 original size:26 final size:26
Alignment explanation
Indices: 663814--663866 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
663804 CCGGTCTGAT
663814 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
663840 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
663866 C
1 C
663867 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:666450 original size:902 final size:897
Alignment explanation
Indices: 664714--667422 Score: 3839
Period size: 902 Copynumber: 3.0 Consensus size: 897
664704 CCGATCTGAT
* * * * *
664714 CTTAGACTGGGAATCAACTCTGTATACCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* *
664779 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGAGCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
664844 TGCTACCGCAACCTTC-AGTCTGGTCTGATCTTAAACTAGGAATGAACTCCGTATGACTAAGCCA
131 TGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* *
664908 ACCGACAAAACGAGCGGACGGGCGGGCA--CT---A-TG-CCGGCCAGAGAGACGGGATGCGCAA
195 ACCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCCCGGCCAGAGAGACGGGATGCGTAA
664966 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
665031 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGCCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
665096 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTT
* *
665161 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 TGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
*
665226 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
665291 AGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAG
583 AGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
665356 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
665421 CATGTGCGCACACCCCCCGGCCACCT-CGATCGCCGGAACCCCAATGCCGCGGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCGGCC-CCTCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *** * *
665485 GGCGATGGTTCGGTGATGGTGACCCGACGAAGGAAAATGCAACACCAGCAAATACCCGAGCCCAG
777 GG-GAT-GTT-GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * *
665550 CATGTGCTGCCGCAACCCTCGGTCCAGCCCGATATTAGACTGGGAATGAACTCCGTTTG
839 CATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
665609 CTTAGACTGGTAATAAACTCTGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
665674 CGGCCAGTGGGGCGGGATGTGCAAGTTGGGGA-CTGACCGGGTCCCCCTCTGCGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTACCGATC
*
665738 CTGCTGCCGCAACCCTCGATCCGGTCTGTTCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* *
665803 ACCGACGAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCACCGGCCAAAGAGACGGGATGCGTA
195 ACCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGC-CCGGCCAGAGAGACGGGATGCGTA
*
665868 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
665933 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
665998 CGACTCGTTTTCTTTTTTTCACGATTTTCT-AATCTTTTTGCGGTTCAGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTT
* ** *
666062 TTGAAAGGACTACTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TTGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
666127 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTT
518 A-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
666192 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
666257 GTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
666322 TCATCTACGCACACCCCCCGGCCCCTCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
712 TCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** *
666387 GGTGATGCTTTGGCGACGGTGCCCCGATGAAGAAAAATGTGGCACCAGTGCTTGCCCGAGCCCAG
777 GG-GATG--TTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* *
666452 CATGTGCTGCCGCAA-CCTGCGGT-CTGATCCGCTCTTAGACTGGGAATGAACTCCGTATG
839 CATGTGCTGCCGCAACCCT-CGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
666511 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* ** *** ** * * * * *
666576 CGGCCAGAGGGGCGGAATGCATAAGCCAATGATCGGTCGGGTCCTCCTCTACGTACTATCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * **
666641 TGTTGCCGGAACCCTCGGTACGGTCAAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * * * **
666706 CCGATAAAACGAGCGAGCCGACGGGC-GGCCGGGCACTACGCTTGCCAGAGAGACGGGATGCGTA
196 CCGACAAAACGAGCGGGCGGGCGGGCAGG-CTGGCACTGC-CCGGCCAGAGAGACGGGATGCGTA
* * * *
666770 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGCCAATGGC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
666835 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
666900 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTT
* * *
666965 TTGGAAGGACTTTTGGCCCCAAAGTTGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAA
453 TTGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
667030 AAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGGGACCATTTGAAGAAATTGTCCACATTT
518 AAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
667095 TAGACATTTTGATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
667160 GTTCTCGAGGTTTGAT-AAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCAC
647 GTTCTCGAGGTTTGATGAA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
667224 ATCATGTGTGCACACCCCCTCGGCCCC-CCGACCGA-CGGAACCCCAATGCCACCGGTCATGTTC
711 ATCATGTGCGCACACCCCC-CGGCCCCTCCGATC-ACCGGAACCCCAATGCCGCCGGTCAGGTTC
667287 T-C---A----GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
774 TCCGGGATGTTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
** * * **
667344 CATGTGCTGCCGCAACTGTTGGTCCAATCTAATCTTAGACTGGGAATGAACTCCGTATG
839 CATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
667403 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
667423 CATCTACCTA
Statistics
Matches: 1619, Mismatches: 168, Indels: 57
0.88 0.09 0.03
Matches are distributed among these distances:
892 115 0.07
893 2 0.00
894 1 0.00
895 191 0.12
896 1 0.00
897 2 0.00
898 1 0.00
900 1 0.00
901 18 0.01
902 787 0.49
903 491 0.30
904 9 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
CCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCCCGGCCAGAGAGACGGGATGCGTAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTTG
GAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCTCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGGA
TGTTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:666514 original size:26 final size:26
Alignment explanation
Indices: 666485--666537 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
666475 CTGATCCGCT
666485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
666511 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
666537 C
1 C
666538 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:669489 original size:26 final size:26
Alignment explanation
Indices: 669453--669505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
669443 CCGATCTGAT
*
669453 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
669479 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
669505 C
1 C
669506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:670644 original size:159 final size:158
Alignment explanation
Indices: 670349--670709 Score: 384
Period size: 159 Copynumber: 2.3 Consensus size: 158
670339 CTCGATCCAG
* * * ** * *
670349 TCCGATCTTAGATCGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAGGAGCG
1 TCCGATCTTAGATTG-GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAATACGAGCA
* * * * *** * *
670414 CTCAGCCGGCCAGAGGGGCGGGATGCCCAAGCTGAGGATCGGCCGAGTCCCCTTCTGGGTGCTGT
65 CTCAGCCGGCCAGAGGGGCGGAAAGCCCAAGCTGAGGATCGACCGAGTCCCCCTCTACATGCAGC
* * *
670479 CGATCCTGCT-ATCGCAATCCTCAGTCCGA
130 CAATCCTGCTGCT-GCAACCCTCAGTCCGA
*
670508 TCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGAATACGAGCA
1 TCCGATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAATACGAGCA
* ** * * * *
670573 CTCAGTCGGCCAGAGGGGCGGAAAGCGTAAG-TCGGGGATCTATCGGGTCCCCCTCTACATGCAG
65 CTCAGCCGGCCAGAGGGGCGGAAAGCCCAAGCT-GAGGATCGACCGAGTCCCCCTCTACATGCAG
*
670637 CCAATCCTGCTGCTGCAACCCTCAGTCCGG
129 CCAATCCTGCTGCTGCAACCCTCAGTCCGA
* * *
670667 TCTGATCTTAGATTGGGAATGAACTCCGCATGCCTAAGCCAAC
1 TCCGATCTTAGATT-GGAATGAACTCCGTATGCCTAAGTCAAC
670710 TGACGAAATC
Statistics
Matches: 167, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 3 0.02
159 161 0.96
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TCCGATCTTAGATTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAATACGAGCAC
TCAGCCGGCCAGAGGGGCGGAAAGCCCAAGCTGAGGATCGACCGAGTCCCCCTCTACATGCAGCC
AATCCTGCTGCTGCAACCCTCAGTCCGA
Found at i:671429 original size:26 final size:26
Alignment explanation
Indices: 671392--671445 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
671382 TCCGATCGGA
*
671392 GCTTAGATTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
*
671418 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCATAT
671444 GC
1 GC
671446 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:672324 original size:26 final size:26
Alignment explanation
Indices: 672295--672346 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
672285 CGGTCCGATT
672295 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
672321 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
672347 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:672634 original size:901 final size:904
Alignment explanation
Indices: 670514--674007 Score: 4614
Period size: 905 Copynumber: 3.9 Consensus size: 904
670504 CCGATCCGAT
* * ** * * *
670514 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGAATACGAGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTACGGGCGCTCAGC
* * * * ** *** *
670579 CGGCCAGAGGGGC-GGAAAGCGTAAGTCGGGGATCTATCGGGTCCCCCTCTACATGCAGCCAATC
66 CGGCCAGAAGGGCAGG-ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATC
* * * * * *
670643 CTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGCATGCCTAAGCCA
130 CTACTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
670708 ACTGACGAAATC-AGCGGGCAAGCGGGCGGGCGGGCACTAAGTCAGCCAGAGAGACGGGATACGC
195 ACCGACGAAA-CGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACGC
* * *
670772 AAGCCGTGTATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
670837 CATTTTTGTGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAT
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-
* * *
670902 G-CAACTCGTTTTCTATTATTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
388 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * ** *
670966 TTTCGAAAGTAGTTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTCTCTTGCACA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
671031 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* **
671096 TTTAGACACTTTAATATCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
671161 GAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * **
671226 CATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACCCTAATGTTGCCGGTCAGGTT
713 CATCATGTGCGCACACCCCCC-CGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTT
** * *
671291 CTCCGGTGATGCTCCGGCGATGGTGCCCCGAGGAAGAAAAATACGGCACCAGCACATGCCCGAGC
777 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * * * *
671356 CCAACATGTGCTGCTGCCACCCTTGGTCCGATCGGAGCTTAGATTGGGAATGAACTCCATATG
842 CCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
** *
671419 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-TGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAATAAGCGTACGGGCGCTCAG
* * *
671483 CCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATC
65 CCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATC
* * * *
671548 CTATTGCTGCATCCCTC-GATCCGGTCCGATCTTAGACT-TGGAATGAACTTCGTATGCCTAAGC
130 CTACTGCTACAACCCTCAG-TCCGGTCCGATCTTAGACTGT-GAATGAACTCCGTATGCCTAAGC
* * * * *
671611 CAACCGACGAAACGAGC-GACTGGGC-GAGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
193 CAACCGACGAAACGAGCGGGC-GGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATA
* ** * *
671674 CACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTGTTCATATTTCTGCATGCCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* *
671739 TGCCATTTTTATGGCCTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
671804 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTCGGGATTTTTTAAATT
386 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
671869 TTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATGCC-TGCATTTTTGTTGGCATGC
451 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT-CCTTGTATTTTTGTTGGCATGC
*
671933 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAGGTGTCCC
515 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
671997 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
672062 TGTGAGTTCTCGAGGTTTGTTGTGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATC
645 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
672127 GTACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCAGAACCCCAATGCCGCCGATCAGG
710 GCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGG
* * *
672191 TTCTCCGACAATGCTCCGACAATGGTGCCCCGACGAAGAAAAATACGGAACCAGCACATGCCCGA
775 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * * * *
672256 GCCTAGCATATGTTGCCGTAACCCTTGG-CCGGTCCGATTTTAGACTGGGAATGAACTCCGTATG
840 GCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
672320 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCTACCAACAAAATAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTACGGGCGCTCAGC
* *
672385 CGGCCAGAAGGGCAGGATGCACAAGCCGGGGATCGGTCGTGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
* * * * * * *
672450 TGCTGCTACAATCCTCGGTCTGGTTCGATCTTATACTGTGAATGAACTCCGTATGCCTAAGCTAA
131 TACTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
672515 CCAACGAAACGAACGGGTGGGCGGATGGGCGGGCACTACGGCGGCCAGAGAGACAGGATACGCAA
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACGCAA
* * * *
672580 GCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
672645 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
672710 GACTTGTTTTCTATTTTTCATGATTTTTGAAA-CTTTATGCGGTTCGAGATTTTTTAAAATTTTT
391 GACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTT-TACGGTTCGGGATTTTTTAAAA-TTTT
** * *** *
672774 TTCGGAATTAGTTTTGGCCCTAAACTTCACAGACATGATCCTTGTATTTTTGTTGGTATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
** *
672839 AAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
672904 TCAGACAATTTAACGGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
672969 AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
673034 ATCTTATGAGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCT
714 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT
* **
673099 CC-AGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
779 CCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * * *
673163 CAGTATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATG
843 CAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * ** * *
673225 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTACGGGCGCTCAGC
* * * * * *
673290 CGGCAAGAGAGGTG-A-GATACGTAAACCGAGGATCGG-CTAGGTCCCCCTCTACATGCTGCCGA
66 CGGCCAGA-AGG-GCAGGATGCGCAAGCCGGGGATCGGTC-GGGT-CCCC-CT-C-TG-T---G-
* * * * *
673352 TCCTACTGCTACCAATCCTACTGCTACAACCCTTAGTCTGATCCAATCTTAGACTAG-GAATGAA
119 ------TGCTGCCAATCCTACTGCTACAACCCTCAGTCCGGTCCGATCTTAGACT-GTGAATGAA
* * * * * *
673416 CTCTGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACCACGCCGGCC
177 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCC
* ** * * **
673481 AGAGAGACAGGATGCTTAAGTCGTGGACCGATAGTTTGGTAGGTGGGTTTAGGCACATCTTCATA
242 AGAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
673546 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCTCG
307 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** * *
673611 TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCA
372 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCG
* *
673676 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTATACCTGATCCTTGTATT
437 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * *
673740 TTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTCGAAGCGTACAAGATTTTGTGACCATTTG
502 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
673805 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
567 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
673870 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
632 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
673935 ACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAAACCCAAT
697 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAAT
674000 GCCGCCGG
762 GCCGCCGG
674008 CCAGAGAGAT
Statistics
Matches: 2263, Mismatches: 285, Indels: 69
0.86 0.11 0.03
Matches are distributed among these distances:
900 9 0.00
901 412 0.18
902 217 0.10
903 158 0.07
904 278 0.12
905 588 0.26
906 16 0.01
907 3 0.00
908 1 0.00
909 2 0.00
910 1 0.00
913 1 0.00
918 274 0.12
919 17 0.01
920 282 0.12
921 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTACGGGCGCTCAGC
CGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
TACTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:674473 original size:529 final size:528
Alignment explanation
Indices: 673473--674516 Score: 1644
Period size: 529 Copynumber: 2.0 Consensus size: 528
673463 GTGGGCACCA
* * ** *
673473 CGCCGGCCAGAGAGACAGGATGCTTAAGTCGTGGACCGATAGTTTGGTAGGTGGGTTTAGGCACA
1 CGCCGGCCAGAGAGACAGGATGCTCAAGCCGTGGACCGATAGGGTGATAGGTGGGTTTAGGCACA
673538 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
673603 CCGTCTCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTT
131 CCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTCAAAACTTTTT
* ** *
673668 ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAAACTTGGTATACCTGATCC
196 ACGGTTCAGGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGCCCCAAACTTGGTAGACCTGATCC
* *
673733 TTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTCGAAGCGTACAAGATTTTGTGA
261 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGA
* *
673798 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTGCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATC
** * *
673863 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCAAATATAAGG
* *
673928 GCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAA
456 GCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAA
673993 ACCCAATGC
520 ACCCAATGC
** *
674002 CGCCGGCCAGAGAGATGGGATG-TGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCAC
1 CGCCGGCCAGAGAGACAGGATGCT-CAAGCCGTGGACCGATAGGGTGATAGGTGGGTTTAGGCAC
* *
674066 ATCTTCATATTTCTATGTGCCAATGCCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
65 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
674131 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTTAAAACTTTT
130 GCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTCAAAACTTTT
** **
674196 TGA-GGTTTGGGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
195 T-ACGGTTCAGGATTTTTAAAAATTTTTTCAAAAGGAGTTTT-GCCCCAAACTTGGTAGACCTGA
* * * *
674260 TCCTTTTATTTTTTTTGGCATG-ACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTG
258 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTG
*
674324 TGACCATTTGAAAAAAGTGTCCCCATTGCAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAA
323 TGACCATTTGAAAAAAGTGTCCCCATTGCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAA
*
674389 ATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCAAGGTTTGATGAGGGATAAGGGGCAAATATA
388 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCAAATATA
* * *
674454 AGGGCCAAGTACTAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCTGATCGTC
453 AGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGACCCCCCCGATCGTC
674517 AGAACCCTAA
Statistics
Matches: 469, Mismatches: 43, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
528 21 0.04
529 408 0.87
530 40 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (528 bp):
CGCCGGCCAGAGAGACAGGATGCTCAAGCCGTGGACCGATAGGGTGATAGGTGGGTTTAGGCACA
TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTCAAAACTTTTT
ACGGTTCAGGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGCCCCAAACTTGGTAGACCTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTGCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCAAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGACCCCCCCGATCGTCGGAAA
CCCAATGC
Found at i:676339 original size:26 final size:26
Alignment explanation
Indices: 676288--676340 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
676278 CTGGTCTGAT
***
676288 CTTAGACTGGGAAAGAACTTTGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
676314 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
676340 C
1 C
676341 CTAAGTCATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:676586 original size:117 final size:117
Alignment explanation
Indices: 676378--676608 Score: 297
Period size: 117 Copynumber: 2.0 Consensus size: 117
676368 GGGAGCTCAG
* * * *
676378 CCGGCCAGAGGGGATAGATGCACAAGTCGGGGATCAGTTGGGTCCCCCTCTGTGTGCTGTCGATC
1 CCGGCCAGAGGGAATAGATGCACAAGACGGGGATCAGTCGGGTCCCCCTCTATGTGCTGTCGATC
* ** *
676443 CTGCTACTGCAACCCTTGATTCGGTCTGATCTAAGACTGGGAATGAACTTAA
66 CTACTACTGCAACCCTCAATTCGGTCTAATCTAAGACTGGGAATGAACTTAA
* * *
676495 CCGGCCAGATGGAATGGATG-AGCAAGACGGGGATC-GATCGGGTCCCCCTTTATGTGCTGTCGA
1 CCGGCCAGAGGGAATAGATGCA-CAAGACGGGGATCAG-TCGGGTCCCCCTCTATGTGCTGTCGA
* *
676558 TCCTACTGCTGCAACCCTCAA-TCTGGTCTAATCTGAGACTGGGAATGAACT
64 TCCTACTACTGCAACCCTCAATTC-GGTCTAATCTAAGACTGGGAATGAACT
676609 CTGTATGCCT
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
116 4 0.04
117 94 0.96
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (117 bp):
CCGGCCAGAGGGAATAGATGCACAAGACGGGGATCAGTCGGGTCCCCCTCTATGTGCTGTCGATC
CTACTACTGCAACCCTCAATTCGGTCTAATCTAAGACTGGGAATGAACTTAA
Found at i:677022 original size:26 final size:26
Alignment explanation
Indices: 676986--677037 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
676976 TGGTCTGATT
676986 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
677012 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
677038 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:678894 original size:26 final size:26
Alignment explanation
Indices: 678844--678894 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
678834 CGGTCTGATC
*
678844 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
678870 TTAGACTGGGAATGAACTTCATATG
1 TTAGACTGGGAATGAACTCCATATG
678895 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:681221 original size:902 final size:900
Alignment explanation
Indices: 679054--684143 Score: 6326
Period size: 894 Copynumber: 5.6 Consensus size: 900
679044 AACTTTGTAT
* *
679054 GCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTT
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
**
679119 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT-AATT-ATACAAT-GTCCCTTAAGCC-TC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
679180 ACATGAAGTTTCATGGCAAGACGAATCGTTTTTTAATTTGTT-ACGAATTTTTGAAACTTTTTAC
131 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT-ATTT-TTCACG-ATTTTTGAAACTTTTTAC
* * * * *
679244 GGTTCGAGATTTTTTAAAATTTTTTGGGAAGGATTTTTGGCCCCAAACTTTGTAGATGTGATCCT
193 GGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
679309 TGTACTTTTATTGGCATGC-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
257 TGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
679373 CCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAAACCTGTAAAAT
321 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAAT
* * * *
679438 CTCAAATGCTC-TTAAGGGGGT-TTAGTTCTCAAAGGTTTGATGAGGGGTAGGGGGCCAAATATA
385 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAAGGGGCC-AATATA
* ** * * *
679501 AGGGTCAAGTAATA-CACGCAT-AGCACATAATGTGCGAA-ACACCCCCAGCCCCGCCGATCGTC
448 AGGGCCAAGTACCAGCACCCATCA-CACATCATGTGCGAACAC-CCCCCGGCCCC-CCGATCGTC
* * * * *
679563 GGAACCCTAATGCCGTCGGTCAGGTTCTCTGATGATGCTCCTACGATGGTGCCCCGAGGAAGAAA
510 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
679628 AATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAAACCTCGGTCTGATCCGATCT
575 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCT
* * * * *
679693 TAGGCTGGGAATGAACTTCGTTTGCTTAGATTGGGAATGAACTCCGTATGCTTAAGTTAACCCAC
640 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * *
679758 GAAACGAGTGTGCGGGTGCTCAACCAGCCAAAGGGGCGGGATGCACGAGTCGAGGATCGCTCGGG
705 GAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGG-AGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * *
679823 TCCCCCTCTGCATGTTGCCAATCCTACTGCCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGA
769 TCCCCCTCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
* *
679888 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA--------GCGGGCGGGCGGGCACTTCGT
834 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGT
679945 CG
899 CG
* * * * *
679947 TCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGATAT-TTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
680011 ATATTTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTA
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
680076 ACGTAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
** *
680141 TCAAGATTTTTTAAAAGTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
196 TCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
680206 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTTGTGACCA
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCA
* ** * * * *
680271 TTTGAAAAAAGTGTCCCCATTTTAGATGCTTTAATGGCCATTGGTAGCAAACCTGCAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
680336 AATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
* ** * * * * *
680401 AAGTACTAGCATGCATCGCACATTATGTGCGAACACCCCTCAGCCCCCCGATCATCGGAACCCCA
454 AAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * *
680466 ATGCCGTTGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCA
519 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * ** *
680531 CCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAAATCTCGGTCTGATCCGATCTTAGACTGAG
584 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGG
* * *
680596 AATGAACTTCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGT
649 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
680661 GTGCGGGTGCTCAACCGGCCAGAGGGGCAAGATGTGCGAGCCGGGGATCGGTCGAGTCCCCCTCT
714 GTGCGGGTGCTCAACCGGCCAGAGGGG-AGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * *
680726 GCATGTTGCCAATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
778 GCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * *
680791 GTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGTGTGCACTACGTCG
843 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCG
* * *
680849 GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGGATAT-TTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
680913 ATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
680978 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGT
131 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * *
681043 TCGGGATTTTTTAAAAGTTTTTCAGAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGT
196 TCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
681108 ATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAAGTCGAAGTGTACAAGATTTTTGTGACCA
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCA
* * *
681173 TTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
681238 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCGAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
* * * * *
681303 AAGTACCAACACGCATCATACATCA-GAGCGCACAACCCCCGCCGGCCCCCCGATCGTCGGAACC
454 AAGTACCAGCACCCATCACACATCATGTGCGAAC-A-CCCC-CCGGCCCCCCGATCGTCGGAACC
* * * ** * *
681367 CCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCA
516 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
** ** * * **
681432 GCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCACAACCCTCGATC-CAGTGTGATCTTAGAC
581 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGA-TCCGATCTTAGAC
* * *
681496 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAAT
645 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
681561 GAGCGTGCGGGAGCTCAACCGGCC-GAGGGGATGGATGCGCAAGCCGGGGATCGGTCGGGTCCTC
710 GAGCGTGCGGGTGCTCAACCGGCCAGAGGGGA-GGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
** * * * * * *
681625 CTCCACGTGCTGCTGATCTTGCTGCTGTAACCCGTTGGTCGCGGTCCTGGATCTTGGACTGGGAA
774 CTCTGCGTGCTGCCGATCCTACTGCCGTAACCC-TCGGTC-CGGT-CT-GATCTTAGACTGGGAA
* * *
681690 TCGAACTCCGT-TGCCTAAGCCAACCGACGAAAATGAGCGGGCGGGGCGGGCGTAGCGGGTACTT
835 T-GAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCGGGC-GGGCGGGCG-GGCGGGCAC-T
681754 GACG-CTG
895 -ACGTC-G
681761 GCCAGAGAGACGGGATGCGCAAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGAGGCACATCT
1 GCCAGAGAGACGGGATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCT
** * * *
681826 TCATATTTCCATGTGTTGCCAATGCCCATTTTTCATGTCTTTCTAAATTCATACAATGCTCCCTT
64 TCATATTT-C-TG-CATGCCAATG-CCATTTTT-ATGGC-TTGTAAATTCATACAATGGTCCCTT
* * **
681891 AAGCCTTTCACGTGAAGGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCCATGA-TTTCAAAA
123 AAGCC-TTCACGTGAA-GTTTCATGGCAAGATGACTCGTTTTCTATTTTT-CACGATTTTTGAAA
* ** ** * * *
681955 CTTTTTACAGTTTAGGA-TTTGCAAAATTTTTCGGAAGGGGTTTTAGCCCCAAACTTGGTAGACA
185 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
682019 TCATCCTTGTATTTTTGTT-GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
250 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
682083 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
315 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
682148 AAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGAGCCAA
380 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG-GCCAA
*
682212 TATAAGGGCCAAGTACCAGCA-CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
444 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACA-CCCCCCGG-CCCCCCGATC
* * * *
682276 GTCGGAACCCCAATGCTGTCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGTCCCAACGAAG
507 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * *
682341 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGACCGGTCCGA
572 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGA
* * *
682406 TCTTAGAATGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACC
637 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
682471 CATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGAGAGATGCGCAAGTCGGGGATCGGCC
702 CACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGAG-GATGCGCAAGCCGGGGATCGGTC
* * * ** * ** * * *
682536 GGGTCCTCTTCTGCGTGCTGCCGATCCTCCTGCCACAATCCTCAATCCGATCCGATCTTAGACTA
766 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
682601 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGACGGGTGGGCACTA
831 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTA
**
682658 CACCG
896 CGTCG
* * *
682663 ACCAGAGAGACGGCATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
682728 ATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCGCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
682793 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTCTTTACGGT
131 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * *
682858 TCGGGAGTTTTTAAAATCTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGT
196 TCGGGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
682923 ATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATATTGTGACCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * ****
682988 TTGAAAAAAGTGTGCCCATTTTAGACACTTTAATAGCTACAAATAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * ** * *
683053 ATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGATATTATACGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCA
* * * *
683118 AGTACCAGCACCTACCACACATCATGTGC-ACACACCCTCCCGGCCCCCCGATCGCCGAAACCCC
455 AGTACCAGCACCCATCACACATCATGTGCGA-ACACCC-CCCGGCCCCCCGATCGTCGGAACCCC
* ** * *
683182 AAAGCCG-CAGGTCAGGTTCTCCGACGATGCTCCGGACGATGGTGCCCCGACGAAGAAAAAAGTG
518 AATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
683246 GCACCAGCACATACCGGAGCCTAGCAAGTGCTGCCGTAACCCTTGGTCTGATCCGATCTTAGACT
581 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACT
683311 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
646 -GG---G------A-ATG---A-AC------T----T-CGTATGCTTAGACTGGGAATGAACTCC
* * ** *
683376 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGTCGGCCAGAGGGGTGGGATGCG
685 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGG-AGGATGCG
* * * * * ** * *
683441 CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACTGATCCTGCTACCACAACCCTTGGTCT
749 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCC
** * * * *
683506 GGTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGA
814 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
683571 CGGGCGGGCGGGCACTACGTCG
879 CGGGCGGGCGGGCACTACGTCG
* * *
683593 GCCAGAGAGACGGCATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * ** * *
683658 ATATTTCTACGTGCCAGTGCCATTTTTATCTCTTGTAAATTCATATAATGGTCCTTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
683723 ACGTGAAGTTTCATGGCAAG-TCGACTCGTTTTTTATTTTTCACAATTTTTAAAACTTTTTACTG
131 ACGTGAAGTTTCATGGCAAGAT-GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * *
683787 TTTGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
195 TTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
683852 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGTTTTTGTGA-CA
259 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
683916 TTTGGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACTTGTAAAATCTC
324 TTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
683981 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAATATAAAGG
388 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGG
* * * * * *
684045 CCAAGTACCAGCACCCATCACACATCATATGCGCACACCCCACGGCCCCCTCGATCATCGAAAAC
452 CCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCCGGCCCCC-CGATCGTCGGAACC
*
684110 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTC
516 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
684144 TGACAAAGAA
Statistics
Matches: 3672, Mismatches: 417, Indels: 179
0.86 0.10 0.04
Matches are distributed among these distances:
891 4 0.00
892 83 0.02
893 79 0.02
894 598 0.16
895 358 0.10
896 154 0.04
897 11 0.00
898 2 0.00
899 1 0.00
900 19 0.01
901 36 0.01
902 492 0.13
903 63 0.02
904 217 0.06
905 10 0.00
906 3 0.00
907 36 0.01
908 20 0.01
909 9 0.00
910 6 0.00
911 4 0.00
912 26 0.01
913 30 0.01
914 20 0.01
915 42 0.01
916 1 0.00
917 10 0.00
918 238 0.06
919 214 0.06
920 44 0.01
921 78 0.02
922 202 0.06
923 53 0.01
924 5 0.00
929 16 0.00
930 486 0.13
931 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (900 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCACACATCATGTGCGAACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
GCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGTGCTCAACCGGCCAGAGGGGAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
TGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCG
Found at i:681525 original size:26 final size:26
Alignment explanation
Indices: 681489--681541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
681479 CCAGTGTGAT
*
681489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
681515 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
681541 C
1 C
681542 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:682436 original size:26 final size:26
Alignment explanation
Indices: 682407--682459 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
682397 CCGGTCCGAT
682407 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACA-GGGAATGAACTCCGTATG
682433 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
682459 C
1 C
682460 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:683339 original size:26 final size:26
Alignment explanation
Indices: 683303--683381 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
683293 CTGATCCGAT
*
683303 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
683329 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
683355 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
683381 C
1 C
683382 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:685506 original size:26 final size:26
Alignment explanation
Indices: 685477--685581 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
685467 CTGATCCGAT
*
685477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
685503 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
685529 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCATATG
685555 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
685581 C
1 C
685582 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:685556 original size:52 final size:52
Alignment explanation
Indices: 685477--685581 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
685467 CTGATCCGAT
*
685477 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
*
685529 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
685581 C
1 C
685582 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (52 bp):
CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
Found at i:687317 original size:26 final size:26
Alignment explanation
Indices: 687288--687392 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
687278 CTGATCCGAT
*
687288 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
687314 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
687340 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCATATG
687366 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
687392 C
1 C
687393 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:687367 original size:52 final size:52
Alignment explanation
Indices: 687288--687392 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
687278 CTGATCCGAT
*
687288 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
*
687340 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
687392 C
1 C
687393 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (52 bp):
CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCAATATG
Found at i:688977 original size:866 final size:875
Alignment explanation
Indices: 685552--695358 Score: 10796
Period size: 902 Copynumber: 11.0 Consensus size: 875
685542 TGAACTCCGC
* *
685552 ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * *
685617 AGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACTG
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-CGATCGGGTCCCCCTCTGCGTGCTGCCG
* * ** * *
685681 ATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAACTCTGTATGCCTAAG
130 ATCCTGCTGCCACAACCCTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * *
685746 CCAACTGACGAATTGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGCATGC
194 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * * *
685811 GCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAGT
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
** * *
685876 GCCATTTTTATCTCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCA
324 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
685941 AGTCGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACTGTGCGGGATTTTTTAAAATT
389 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATT
* * * *
686006 TTTTTGGATGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAT
453 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-
* * * * * *
686071 AAAAAAATTCAGCTAAAAACTTGAAGGGTACAAGTTTTTGTGACCATTTGAAAAAAATGTCCCCT
517 CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
686136 TTTCAGACACTTGAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
686201 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * *
686266 ACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCGAAACCCCAAT-CCACCGGTCAGGTTC
712 ACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-
* *
686330 CTCGACGATGCTCCGACTATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCC
776 CTC--CG--G---CG---ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * ** *
686395 CAGCATGTGCTTTCGTAACCCTCG----G----CCCGAT-C-C-A
831 CAGCATGTGCTGCCGCAACCCTCGTCTAGATTACGGGATACTCGT
* * * *
686429 AT-CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * *
686493 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGCCAA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* ** * * * ** * *
686558 TCCTGTTATCGCAACACTCGATCCATTTTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
686623 CAATCGACGAAAC-A---A----GCGGGCGGGCGGGCACTACGTCGG-CAGAGAGACAGGCTGCG
195 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * *
686679 CAATCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATA
260 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
686744 CCATTTTTATGTCTTGTAAATTCATACAATGGCCCCTTAAGCCTCCACGTGAAGTTTCATGGCAA
325 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
686809 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCCAGATTTTTTAAAATTT
390 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-CGGATTTTTTAAAATTT
* * * *
686874 TTTCGGAAGCG-GTTTTGGCACCAAACTTGGTAGATGTGATCCATGTATTTTTGTTGGCGTGCAC
454 TTTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
686938 AAAAAAACTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCG
518 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* ***
687003 TTTTAGACACTTTAATGGCTACAAACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTA
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-
* ** * * * * *
687067 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATATTATATGGGCCAAGTACCAGCAGCCACCA
646 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * * *
687132 CACATCATGTGCACACACCCTCCCGGCCCCTCGATCGCCGGAACCACAGTGCCGCAGGTCAGGTT
711 CACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * *
687197 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGTCGGAGCCTAGCAAGTGC
776 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
687262 TGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGT
841 TGCCGCAACCCTC-GTCT-A---GA--TT--AC-GGG-AT--ACT-CGT
** * *
687311 ATGCTTAGACTGGGAATGAACTCAATATGCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGG
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAA--CC-CA--C---GA----
* * * ** ** *
687376 GAATGAAC-TCCATATGC-CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGA
47 -AACGAGCGTGC--GGGCGC----TCAA--C-C-----G-GCCAG-AGG-G----G-C-------
* * *
687439 GGGGTGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTACC
82 -----GGGATGCGCAAGCCGGGGAT-CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* ** * * *
687503 ACAACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACTGACGA
141 ACAACCCTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * * *
687568 ATTGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGCATGCGCAAGCCGTGG
205 AACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
687633 ATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
270 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
687698 GGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCGACTCGT
335 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * *
687763 TTTTTATTTTTCACGATTTTTAAAACTTTTTACTGTGCGGGATTTTTTAAAATTTTTTTGGATGG
400 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGG
* * *
687828 ATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
464 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCA
* * * * *
687893 GCTAAAAACTTGAAGGGTACAAGTTTTTGTGACCATTTGAAAAAAATGTCCCCTTTTCAGACACT
528 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
687958 TGAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAA
593 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
688023 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCATCCATCGCACATTATGTGC
658 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
688088 GTACAACCCCCTC-AGCCCCCGATCATCGGAACCCCAATGCTGCCGGTCAAGTTCTCCGGTGATG
723 GCAC-ACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* *
688152 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC
787 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
688216 -C-TC-AG-TT-C-GG-T-CT-G-
852 TCGTCTAGATTACGGGATACTCGT
*
688230 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * **
688294 ATCTGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATGGACCAGGTCCCCCTCTTTGTGCTGCCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
** *
688359 TCCTGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
688424 CAACTGACGAAACAAGCGAGTGGGCGGGCGGGCAGGCGCTACGCCGGCCAGAGAGACGGGATGCG
195 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
** **
688489 CAAGTAGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
260 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
688554 CCAATTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
325 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
688619 GACGACTCATTCTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAACTT
390 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTT
** *
688684 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCCGTATTTTTGTTGGCATGAACA
454 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
688749 AAAAATTTAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
688814 TCAGATACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
688879 AGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATTGCAC
649 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
688943 ATCATGTGCGCACACCCCCCCCGACGCTCCCGATCGTCGGAACCATAATACCGTCGGCCAGGTTC
714 ATCATGTGCGCACA-CCCCCCCGAC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** *
689008 TCTGGCAATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCT
777 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
689073 GCCGCAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGT
842 GCCGCAACCCTC-GTCTAG----A--TT--AC-GGG-AT--ACT-CGT
* * * * *
689121 ATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
689186 AACCGACTAGAAGGGCAGGATGCAG-AAGTCGGGGATCGATTGGGTCCCCCTTTGCATGCTGTCG
66 AACCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
* * * * * *
689250 ATCCTGCTACCACAACCCTCGATCCGGTCAGATCTTATACTAGGAATGAACTCCATATGCCTAAG
130 ATCCTGCTGCCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * * * *
689315 CCAACCGACGAAATGAGCGGGCGGACGGGCGGGCTTGCACTACGCCGACCAGAGATA-TGGATGC
194 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * **
689379 GCAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCATGAAAAT
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
689444 GCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCA
324 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
689509 AGACAACTCGTTTTTTCTATTTTTC-CTGATTTTTGAAACTTTTTACGATTCGAGATTTTGT-AA
389 AGACGACTCG--TTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAA
* * *
689572 ATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATG
450 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
689637 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCC
515 CA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
689701 CCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
579 CCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
689766 GGTGCGAGTTCTCAAGGTTTCATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAACA-CCA
643 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
689829 TCGCACATCATGTGCGCACACCCCCCCGGTCCCCCCGATCGTCGAAACCCCAATACCGTCGGTCA
708 TCGCACATCATGTGCGCACACCCCCCC-GACCCCCCGATCGTCGGAACCCCAATGCCG-C---C-
* *
689894 GGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
767 GG-TC--AGGT--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
689959 GAGCCCAACATGTGCTGTCGTAACCTTCGGTCATGTCT-GATCTTAGACTGGGAATGAACTCCGT
826 GAGCCCAGCATGTGCTGCCGCAACC--C--TC--GTCTAGA--TT--AC-GGG-AT--ACT-CGT
* * ** *
690023 ATGCTTAGATTCGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * * * * ** *
690088 AGCCTACCAGAGGGGTGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCTTCTGTATGCTACCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * * *
690153 TCTTGCTACTACAACCCTCGATACGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
690218 CAACCGACGAAATGAGCGAGCGGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCG
195 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
** * * * * *
690283 CAAGTTGTGGATCGATAGGGTGGAATGTGGGCTTGGGCACATCTTCATATTTTTG-AGTGCCAAT
260 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAAT
**
690347 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATTCTTCACGTGAAGTTTCATGGCA
324 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
690412 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGCTGTTCAGGATTTTTTAAAATT
389 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATT
* * * * * *
690477 TTTTTGGAAGGAGTTTTGGCTCAAAACTTGGTAGACATGATGCTTGTATTTTT-TTGGCATGGAC
453 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
690541 AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCA
518 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
**
690606 TTTCAGACACTTTAATATCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
690671 TGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * ** *
690736 ACATCATGTGCGCATACCACCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTC
712 ACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
*
690801 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
777 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
690866 GCTGCCACCCTTGGTCCTGTCT-GATCTTAGATTGGGAATGAACTCCGT
842 GCCGCAACCC----T-C-GTCTAGA--TT--A-CGGG-AT--ACT-CGT
*
690914 ATGCTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
690978 AACCAGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCTCTTCTGTGTGCTGCCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* ** * **
691043 TCCTACTGCCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
691108 CAACCGACGAAACGAGCGA----GCAGGCGAGCGGGCACTACGTCGGCCAGTA-AGACGGGATGC
195 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAG-AGAGACGGGATGC
* * *
691168 GCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAAT
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
691233 GCCATTTTTATGGCTTTTAAATTCATACATTGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCA
324 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
691298 AGACGACTCGTTTTCTATTTTTCTCGATTTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATT
389 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATT
* * *
691363 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGCAC
453 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
691428 AAAAATAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCA
518 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
691493 TTTCAAACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** * *
691558 TGAGTTCTTGAGGTTTGATG-GGGGTAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * ** *
691622 ACATCATGTGCGCACACCTCCCCAGGCTCCCCGATCGTCAGAACCCCAACGCTACCGGTCAAGTT
712 ACATCATGTGCGCACACC-CCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * **
691687 C-AC--CGATGATGCTCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAATATGTGC
776 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
691749 TGCCGCAACCCTCGGTCCGGTCCA-ATCTTAGACTGGGAATGAACTCCGT
841 TGCCGCAACCCTC-GT-C--T--AGA--TT--AC-GGG-AT--ACT-CGT
* * *
691798 ATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
691863 AGCCGGCCAGAGGGGCGGAATGCACAATCCGAGGATCGGTCAGGTCCCCCTCTGCATGCTGTCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * *
691928 TCCTACTGCCACAACTCTCGATTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * **
691993 CAACC-AAGAAAACGAGCGGGCCAACAGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGG
195 CAACCGACG-AAACGAGC--G--AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * * * **
692057 ATGTGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGC
255 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
692122 CAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAT
320 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* **
692187 GGCAAGGCGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAA
385 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAA
* **
692252 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGCGTTTTTGTTGGCAT
449 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
692317 GCATAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCC
514 GCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
692382 CCATTTCAGACACTTTAGTGGCTACTAGCAGCAAACCTGTAAAATTTGAAATGCTCTTTAAAGGG
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
692447 GTGTGAGTTCTCAAGGTTTGATGAGGGACAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCAT
644 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
692512 CGCACATCATGTGCGCACACCCCCCTGGCCCCCCGATCGCCAGAACGCCAATGCCGTCGGTCAGG
709 CGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA-G
* *
692577 TTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGA
773 ------G-T--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* **
692642 GCCAAGCATGTGCTATCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGT
828 GCCCAGCATGTGCTGCCGCAACCCTC-GTCT-A---GA--TT--AC-GGG-AT--ACT-CGT
* * * *
692704 ATGCTTAGACTGGCAATGAACTCCATATGCCTAAGTAAACCCACGAAACGAGCGTGCAGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * * * * * *
692769 AGTCAGCCAGAGGGGTGGGATGCACAATCCGAGGATCGACCGGGTCCCCCTCTGCATGCTGCCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
** * * * * *
692834 TCCTATTGCCACAGCCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGC
131 TCCTGCTGCCACAACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * *
692899 CAACCGA--AAA--AATGAGTGGGCGGGCGGGGCGGGCACTACGTCGACTAGAGAGACGGGATGT
195 CAACCGACGAAACGAGCGAGCGGGCGGGC-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * **
692960 GCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAAT
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
693025 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCA
324 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** **
693090 AGACGACTCGTTTTCTTTTTTTCACGATCTTCAAAACTTTTTACGGTTTAAGATTTTTTAAAATT
389 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGATTTTTTAAAATT
* **
693155 TTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGT
453 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
693220 AAAACATTCAGCTAAAAACTCGAAGGGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
693285 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
693350 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGCA
648 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
693415 CATCATGTGCGCACACCCCACCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGCTCTGGT
713 CATCATGTGCGCACA--CC-CCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* *
693480 TCTCCGGCGATGCTCCGGTGATGGTGCCCC-ACCGAAGAAACATTCGGCACCAGCACATGCCCGA
775 TCT-C--CG--G---C---GATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * *
693544 ACCTAGCATGTGCTACCGCAACCCTCGATCTAGTCAGATCTTAGACTGGGAATGAACTCCGT
828 GCCCAGCATGTGCTGCCGCAACCCTCG-TC---T-AGA--TT--AC-GGG-AT--ACT-CGT
* *
693606 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
693671 AGCCGACTAGAAGGGCGGGATGCGCAAGCCGGTGATCGATCGGGTCCCACTCTACGTGCTACCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* **** * * ** * *
693736 TCTTGCTGTTGTAGCCCTCGGTTCGATCTGATCTTAGACACGGAATGAACTCTGTATCCCTAAGC
131 TCCTGCTGCCACAACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * * * * * *
693801 CAACCGACGAAACAATCGGGCAGGCGGGCTGACGAGCATTACATCGGCCAGAAAGATGGGATGCA
195 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* *
693866 CAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCATGCTAATG
260 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
693930 CCA-TTTTATGGCTTGTTAAATTCATACCAAT-GTCCCTTTAAGCCTTCATGTGAAGTTTTGATG
325 CCATTTTTATGGCTTG-TAAATTCATA-CAATGGTCCC-TTAAGCCTTCACGTGAAG-TTTCATG
* **
693993 GCAAAGACGACT-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTC-GATAATTTTTA
386 GC-AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGAT--TTTTTA
* * *
694056 AAATTTTTTCGGAAGGAAG-TTTGGCCCCAAACTTGGTAAACGCGATCCTTGTATTTTTTTTGGC
448 AAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
694120 ATGCACAAAAACATTCAGCTAAAAACTCGGAAGTGTACAAGATTTTTGGGTGACCATCTTGGAAA
512 ATGCACAAAAA-ATTCAGCTAAAAACTC-GAAGTGTACAAGA-TTTT--GTGACCAT-TT-GAAA
*
694185 AAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
570 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
694250 TTTAACGAGGTGTGAGTTCTCAAGATTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACC
635 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
694315 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATTGTCGGAACCCCAATGCT
700 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC-CGATCGTCGGAACCCCAATGCC
* * ** * * *
694379 GTCGGTTAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGTACCAGCACATGCCCTAG
764 GCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
694444 CCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCTGATTTAGATTGGGAATGAACTCCGT
829 CCCAGCATGTGCTGCCGCAACCCTC-G-TC--T-AGA-TT--A-CGGG-AT--ACT-CGT
*
694504 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
694569 AACCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAACCGGGTCCCCCTCTACGTGCTGCCGA
66 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* ** *
694634 TCCTACTGCTGCAACCCTCAG-TCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAG
131 TCCTGCTGCCACAACCCTC-GTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
694698 CCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGC
194 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
694763 GCAAGTCGTGGATTGATAGGG-GGTAGGTCGGTTTAGGCACATCTTCATATTTCT--ATGTTCCA
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCA
* *
694825 ATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
322 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
694890 CAAGACGACTCGTTTTCTATTTTTTAAGATTTTTGAAACTTGTTGCAGTTCGATATTTTTTTAAA
387 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAA
* * ** * * * * * *
694955 CTTTTTGGGAAGGAGTTTTCACCCTAAACTTGGTAGATGCGATCCCTGTATTTTTGTTGTCGTGC
451 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
695020 ACAAAAAAATTCACCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
516 AC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
695085 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
695150 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
645 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * ** * *
695215 ACACATCATATGCGCACA-CCCCCGGCCCCCCCGATCATCAAAACCCCAATGCTGCCAGTCAGGT
710 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
695279 TCTCCGACGATGGTGCCCCGATGAAGAAAAATGCCGCTCCAGCACATGCCCGAGTCCAGCATGTG
775 TCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
695344 TTGCCGCAACCCTCG
840 CTGCCGCAACCCTCG
695359 GTCCGGTCCA
Statistics
Matches: 7657, Mismatches: 997, Indels: 541
0.83 0.11 0.06
Matches are distributed among these distances:
857 60 0.01
858 1 0.00
860 2 0.00
863 1 0.00
864 48 0.01
865 152 0.02
866 477 0.06
867 452 0.06
868 38 0.00
870 2 0.00
871 1 0.00
874 1 0.00
875 4 0.00
876 169 0.02
877 3 0.00
878 3 0.00
879 5 0.00
880 2 0.00
881 2 0.00
882 3 0.00
883 29 0.00
884 113 0.01
885 164 0.02
886 323 0.04
887 181 0.02
888 4 0.00
889 97 0.01
890 337 0.04
891 290 0.04
892 494 0.06
893 530 0.07
894 13 0.00
895 27 0.00
896 126 0.02
897 55 0.01
898 306 0.04
899 549 0.07
900 7 0.00
901 191 0.02
902 720 0.09
903 175 0.02
904 46 0.01
905 94 0.01
906 389 0.05
907 38 0.00
908 13 0.00
909 19 0.00
910 32 0.00
911 11 0.00
912 2 0.00
913 153 0.02
915 1 0.00
916 3 0.00
917 3 0.00
918 28 0.00
919 2 0.00
920 1 0.00
922 3 0.00
923 1 0.00
925 1 0.00
927 2 0.00
929 1 0.00
932 2 0.00
934 1 0.00
935 98 0.01
936 3 0.00
938 1 0.00
940 2 0.00
942 1 0.00
943 27 0.00
944 512 0.07
945 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
TCCTGCTGCCACAACCCTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGTCTAGATTACGGGATACTCGT
Found at i:689134 original size:26 final size:26
Alignment explanation
Indices: 689098--689149 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
689088 CTGGTTCAAT
689098 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
689124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
689150 TCTAAGCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:690051 original size:26 final size:26
Alignment explanation
Indices: 690000--690052 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
689990 CATGTCTGAT
* *
690000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
* *
690026 CTTAGATTCGGAATGAACTCTATATG
1 CTTAGACTCGGAATGAACTCCATATG
690052 C
1 C
690053 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:690927 original size:26 final size:25
Alignment explanation
Indices: 690891--690942 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
690881 CCTGTCTGAT
*
690891 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
690917 CTTAGACTGGGAATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
690942 C
1 C
690943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:691804 original size:26 final size:26
Alignment explanation
Indices: 691775--691827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
691765 CCGGTCCAAT
*
691775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
691801 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
691827 C
1 C
691828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:692721 original size:26 final size:26
Alignment explanation
Indices: 692681--692733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
692671 CTGATCTGAT
* *
692681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
692707 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
692733 C
1 C
692734 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:693619 original size:26 final size:26
Alignment explanation
Indices: 693583--693635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
693573 CTAGTCAGAT
693583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
693609 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
693635 C
1 C
693636 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:694518 original size:26 final size:26
Alignment explanation
Indices: 694482--694533 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
694472 TCGGTCTGAT
*
694482 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
694508 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
694534 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:697029 original size:163 final size:162
Alignment explanation
Indices: 696692--697075 Score: 417
Period size: 163 Copynumber: 2.4 Consensus size: 162
696682 ACTCCGTATA
* * * * *
696692 CTTACACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCATGC---GGGCACTC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGGGGCACTC
* * * * * *
696754 TGCCTGCCAGAAGGGCGAGATGCGCAAGTCGAGGATCGGTCGGGTCCTCTTCTACGTGCTGCCGA
66 TACCTGCCAGAAGGACGAGATGCGCAAGCCGAGGATCGATCGAGTCCTCCTCTACGTGCTGCCGA
* *
696819 TCCTCCTGCCGCAATCCTCAATCTGATCTGAT
131 TCCTCCTACCGCAACCCTCAATCTGATCTGAT
*
696851 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGTGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGG-GGGCACT
696916 AC-ACC-GACCAG-AGAGACG-GCATGCGCAAGCCG-GGAATCGATCGAGTCAC-CCTCTACGTG
65 -CTACCTG-CCAGAAG-GACGAG-ATGCGCAAGCCGAGG-ATCGATCGAGTC-CTCCTCTACGTG
** * ** *
696975 CTGTTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
124 CTGCCGATCCTCCTACCGCAACCCTCAATCTGATCTGAT
** * *
697014 CTTAGACTGGGAATGAACTCCGTATGTGTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGG-GGGC
697076 GAGCGGGCAG
Statistics
Matches: 189, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
159 48 0.25
162 6 0.03
163 133 0.70
164 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (162 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGGGGCACTC
TACCTGCCAGAAGGACGAGATGCGCAAGCCGAGGATCGATCGAGTCCTCCTCTACGTGCTGCCGA
TCCTCCTACCGCAACCCTCAATCTGATCTGAT
Found at i:697761 original size:26 final size:26
Alignment explanation
Indices: 697723--697775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
697713 TCGGTCTGAT
*
697723 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
697749 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
697775 C
1 C
697776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:699033 original size:26 final size:26
Alignment explanation
Indices: 698997--699049 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
698987 CCTGTCTGAT
698997 CTTAGACTGGGAAT-AAACTCCGTATG
1 CTTAGACTGGGAATGAAA-TCCGTATG
* *
699023 CTTAGATTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
699049 C
1 C
699050 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Done.