Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 68 of 120
Found at i:7959841 original size:16 final size:17
Alignment explanation
Indices: 7959797--7959842 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
7959787 TCTTACGAAT
*
7959797 TTGAAATTCTTGTGAAC
1 TTGAAATTCTTGTCAAC
*
7959814 CT-AAAGTTCTTG-CAAC
1 TTGAAA-TTCTTGTCAAC
7959830 TTGAAATTCTTGT
1 TTGAAATTCTTGT
7959843 GAATCTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (17 bp):
TTGAAATTCTTGTCAAC
Found at i:7960066 original size:17 final size:17
Alignment explanation
Indices: 7960046--7960078 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7960036 GAATTTGAAA
7960046 GTCTTGTGAATCTTTGT
1 GTCTTGTGAATCTTTGT
7960063 GTCTTGTGAATCTTTG
1 GTCTTGTGAATCTTTG
7960079 AATCTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (17 bp):
GTCTTGTGAATCTTTGT
Found at i:7960084 original size:17 final size:17
Alignment explanation
Indices: 7960011--7960084 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
7960001 AGAATATAAA
**
7960011 AATCTTGTGAATCTTCC
1 AATCTTGTGAATCTTTG
* *
7960028 ATTCTTGCGAA--TTTG
1 AATCTTGTGAATCTTTG
7960043 AAAGTCTTGTGAATCTTTG
1 -AA-TCTTGTGAATCTTTG
**
7960062 TGTCTTGTGAATCTTTG
1 AATCTTGTGAATCTTTG
7960079 AATCTT
1 AATCTT
7960085 TTAATAGAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
15 2 0.05
16 1 0.02
17 36 0.84
19 4 0.09
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.46
Consensus pattern (17 bp):
AATCTTGTGAATCTTTG
Found at i:7960326 original size:42 final size:41
Alignment explanation
Indices: 7960273--7960425 Score: 126
Period size: 42 Copynumber: 3.6 Consensus size: 41
7960263 TAATAAGCCT
* *
7960273 ATTTTTTAATTTAAAGTTGTTTAACTTCTGTATAAAAAACTC
1 ATTTCTTAATTTAAAATTGTTTAACTTCTGTATAAAAAAC-C
* * * * * *
7960315 ATTTCTTAATTTAAAATTGTTCAGCCTCTGCATAAAGGAGCC
1 ATTTCTTAATTTAAAATTGTTTAACTTCTGTATAAA-AAACC
* ** * *
7960357 TATTTCTTAATTTAAAAGTTGTTGAGGTTTTATATAAAAAAGCCC
1 -ATTTCTTAATTTAAAA-TTGTTTAACTTCTGTATAAAAAA--CC
*
7960402 ATTTCTTAATTTAAAATTTTTTAA
1 ATTTCTTAATTTAAAATTGTTTAA
7960426 AAAGTTTTTA
Statistics
Matches: 87, Mismatches: 19, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
42 31 0.36
43 24 0.28
44 30 0.34
45 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (41 bp):
ATTTCTTAATTTAAAATTGTTTAACTTCTGTATAAAAAACC
Found at i:7960406 original size:44 final size:44
Alignment explanation
Indices: 7960267--7960417 Score: 155
Period size: 44 Copynumber: 3.5 Consensus size: 44
7960257 TAACCTTAAT
* * * *
7960267 AAGCCTATTTTTTAATTT-AAAGTTGTTTAACTTCTGTATAAAA
1 AAGCCCATTTCTTAATTTAAAAGTTGTTCAGCTTCTGTATAAAA
* * * *
7960310 AA-CTCATTTCTTAATTTAAAA-TTGTTCAGCCTCTGCATAAAG
1 AAGCCCATTTCTTAATTTAAAAGTTGTTCAGCTTCTGTATAAAA
* * * * * *
7960352 GAGCCTATTTCTTAATTTAAAAGTTGTTGAGGTTTTATATAAAA
1 AAGCCCATTTCTTAATTTAAAAGTTGTTCAGCTTCTGTATAAAA
7960396 AAGCCCATTTCTTAATTTAAAA
1 AAGCCCATTTCTTAATTTAAAA
7960418 TTTTTTAAAA
Statistics
Matches: 85, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
42 29 0.34
43 22 0.26
44 34 0.40
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.42
Consensus pattern (44 bp):
AAGCCCATTTCTTAATTTAAAAGTTGTTCAGCTTCTGTATAAAA
Found at i:7960502 original size:34 final size:35
Alignment explanation
Indices: 7960426--7960506 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 35
7960416 AATTTTTTAA
7960426 AAAGTTTTT-AAGCCTCTGTTTAAAGAAACTATTT
1 AAAGTTTTTAAAGCCTCTGTTTAAAGAAACTATTT
* ** *
7960460 AAAATTTTTAAAGCCTCTGTTTATCGAGA-TATTT
1 AAAGTTTTTAAAGCCTCTGTTTAAAGAAACTATTT
*
7960494 GAAGTTTTTAAAG
1 AAAGTTTTTAAAG
7960507 TTATTGAGCC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 24 0.60
35 16 0.40
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (35 bp):
AAAGTTTTTAAAGCCTCTGTTTAAAGAAACTATTT
Found at i:7960813 original size:6 final size:6
Alignment explanation
Indices: 7960798--7960861 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
7960788 AAAATTCCAA
* * *
7960798 TTTAGGT TTTACT TTTA-T TTTAGT TTTAGT TTTAAT TTTGATT TTTAGTT
1 TTTA-GT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTT-AGT TTTAG-T
*
7960848 TTTAAT TTTAGT TT
1 TTTAGT TTTAGT TT
7960862 ATATTATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
5 5 0.10
6 29 0.60
7 14 0.29
ACGTcount: A:0.19, C:0.02, G:0.11, T:0.69
Consensus pattern (6 bp):
TTTAGT
Found at i:7960849 original size:13 final size:12
Alignment explanation
Indices: 7960804--7960861 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 12
7960794 CCAATTTAGG
*
7960804 TTTTACTTTT-A
1 TTTTAGTTTTAA
*
7960815 TTTTAGTTTTAG
1 TTTTAGTTTTAA
* *
7960827 TTTTAATTTTGAT
1 TTTTAGTTTT-AA
7960840 TTTTAGTTTTTAA
1 TTTTAG-TTTTAA
7960853 TTTTAGTTT
1 TTTTAGTTT
7960862 ATATTATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 9 0.24
12 12 0.32
13 13 0.34
14 4 0.11
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.71
Consensus pattern (12 bp):
TTTTAGTTTTAA
Found at i:7961086 original size:24 final size:27
Alignment explanation
Indices: 7961029--7961088 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 27
7961019 TAAATCATGA
7961029 AAAATCAAATCATAAAAAACTAATTCAC
1 AAAATCAAATCATAAAAAAC-AATTCAC
*
7961057 ACAAATCAAATCA-AAGAAA-AATT-AC
1 A-AAATCAAATCATAAAAAACAATTCAC
7961082 AAAATCA
1 AAAATCA
7961089 CAGATTTGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 6 0.20
25 3 0.10
26 4 0.13
28 6 0.20
29 11 0.37
ACGTcount: A:0.63, C:0.17, G:0.02, T:0.18
Consensus pattern (27 bp):
AAAATCAAATCATAAAAAACAATTCAC
Found at i:7962014 original size:24 final size:25
Alignment explanation
Indices: 7961960--7962014 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
7961950 TTTCTGATTT
* *
7961960 TATTTTATTTTGATTTTTCCTCTTA
1 TATTTTATTTTGATTTTTACTCTCA
* *
7961985 TTTTTTATTTTG-TTTTTATTCTCA
1 TATTTTATTTTGATTTTTACTCTCA
7962009 TATTTT
1 TATTTT
7962015 TCATAATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.15, C:0.09, G:0.04, T:0.73
Consensus pattern (25 bp):
TATTTTATTTTGATTTTTACTCTCA
Found at i:7962014 original size:25 final size:25
Alignment explanation
Indices: 7961962--7962015 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
7961952 TCTGATTTTA
*
7961962 TTTTATTTTGATTTTTCCTCTTATT
1 TTTTATTTTGATTTTTCCTCATATT
* *
7961987 TTTTATTTTGTTTTTATTCTCATATT
1 TTTTATTTTGATTTT-TCCTCATATT
7962013 TTT
1 TTT
7962016 CATAATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTTATTTTGATTTTTCCTCATATT
Found at i:7962161 original size:38 final size:41
Alignment explanation
Indices: 7962074--7962168 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 41
7962064 ATATTTAATA
7962074 GCATGATTATTA-AT-ATATTTATTTGTGCAATTATGTTTGATT
1 GCATGA-TATTATATCAT-TTTATTTGTGCAATTATGTTT-ATT
**
7962116 GCATGATA-TATATCATTTTATTTGTGTGATT-TGTTT-TT
1 GCATGATATTATATCATTTTATTTGTGCAATTATGTTTATT
7962154 GCATGATATTATATC
1 GCATGATATTATATC
7962169 TTAATTGCAT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
38 10 0.21
39 6 0.12
40 7 0.15
41 17 0.35
42 8 0.17
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (41 bp):
GCATGATATTATATCATTTTATTTGTGCAATTATGTTTATT
Found at i:7962178 original size:21 final size:20
Alignment explanation
Indices: 7962152--7962230 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 20
7962142 TGATTTGTTT
7962152 TTGCATGATATTATATCTTAA
1 TTGCATGATATTATAT-TTAA
*
7962173 TTGCATGATAGTT-TATATTGA
1 TTGCATGATA-TTATAT-TTAA
*
7962194 TTGCATGATATATTATATTATTA
1 TTGCATG--ATATTATATT-TAA
*
7962217 TTGCATGGTATTAT
1 TTGCATGATATTAT
7962231 TTGCATGATA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 29 0.59
22 5 0.10
23 15 0.31
ACGTcount: A:0.30, C:0.06, G:0.14, T:0.49
Consensus pattern (20 bp):
TTGCATGATATTATATTTAA
Found at i:7964148 original size:33 final size:32
Alignment explanation
Indices: 7964111--7964218 Score: 101
Period size: 33 Copynumber: 3.2 Consensus size: 32
7964101 CAAAATTCTA
7964111 AAACCAAAACCCTAACATTAAAACTCAAACCAT
1 AAACCAAAACCCTAA-ATTAAAACTCAAACCAT
* * *
7964144 AAACCAAAACCCTAAAAATAAAACCCTAAACAAT
1 AAACCAAAACCCT-AAATTAAAACTC-AAACCAT
* * * *
7964178 AAACCCAAAATCCTAAACTTTATA-TCAAACCCT
1 AAA-CCAAAACCCTAAA-TTAAAACTCAAACCAT
7964211 AAACCAAA
1 AAACCAAA
7964219 CCTTAAACCT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
32 5 0.08
33 29 0.48
34 15 0.25
35 12 0.20
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.16
Consensus pattern (32 bp):
AAACCAAAACCCTAAATTAAAACTCAAACCAT
Found at i:7964168 original size:14 final size:15
Alignment explanation
Indices: 7964149--7964180 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7964139 ACCATAAACC
7964149 AAAACCCTAAA-AAT
1 AAAACCCTAAACAAT
7964163 AAAACCCTAAACAAT
1 AAAACCCTAAACAAT
7964178 AAA
1 AAA
7964181 CCCAAAATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.66, C:0.22, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAACCCTAAACAAT
Found at i:7964181 original size:14 final size:14
Alignment explanation
Indices: 7964137--7964183 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7964127 ATTAAAACTC
* *
7964137 AAACCATAAACCA-
1 AAACCCTAAACAAT
7964150 AAACCCTAAA-AAT
1 AAACCCTAAACAAT
7964163 AAAACCCTAAACAAT
1 -AAACCCTAAACAAT
7964178 AAACCC
1 AAACCC
7964184 AAAATCCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 1 0.03
13 9 0.31
14 16 0.55
15 3 0.10
ACGTcount: A:0.60, C:0.30, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCCTAAACAAT
Found at i:7964226 original size:19 final size:20
Alignment explanation
Indices: 7964204--7964246 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7964194 ACTTTATATC
7964204 AAACCCTA-AACCAAACCTT
1 AAACCCTAGAACCAAACCTT
* *
7964223 AAA-CCTAGCACTAAACCTT
1 AAACCCTAGAACCAAACCTT
7964242 AAACC
1 AAACC
7964247 AAATCCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 4 0.20
19 15 0.75
20 1 0.05
ACGTcount: A:0.47, C:0.35, G:0.02, T:0.16
Consensus pattern (20 bp):
AAACCCTAGAACCAAACCTT
Found at i:7978043 original size:31 final size:32
Alignment explanation
Indices: 7978006--7978077 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
7977996 TTATACATTA
**
7978006 ATAAAATATTATCATCTT-ATTTATT-TTATTT
1 ATAAAATATTATCAT-TTAATTTATTAAAATTT
* *
7978037 ATAAAATAATATTATTTAATTTATTAAAATTT
1 ATAAAATATTATCATTTAATTTATTAAAATTT
7978069 ATAAAATAT
1 ATAAAATAT
7978078 ATACAGAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 20 0.59
32 12 0.35
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (32 bp):
ATAAAATATTATCATTTAATTTATTAAAATTT
Found at i:7981624 original size:15 final size:15
Alignment explanation
Indices: 7981604--7981641 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7981594 CTTGATCGGT
7981604 TTAATTTTTATTAAA
1 TTAATTTTTATTAAA
*
7981619 TTAA-TTTGATTAAA
1 TTAATTTTTATTAAA
*
7981633 TCAATTTTT
1 TTAATTTTT
7981642 TAATTTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAATTTTTATTAAA
Found at i:7984137 original size:15 final size:15
Alignment explanation
Indices: 7984117--7984157 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7984107 TTTTTATTAT
7984117 ATAAATATTATACTA
1 ATAAATATTATACTA
* *
7984132 ATAAATAATATATTA
1 ATAAATATTATACTA
*
7984147 ATAAAAATTAT
1 ATAAATATTAT
7984158 TAGATTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAAATATTATACTA
Found at i:7984217 original size:19 final size:21
Alignment explanation
Indices: 7984170--7984344 Score: 83
Period size: 22 Copynumber: 7.9 Consensus size: 21
7984160 GATTTATTAT
7984170 ATAAATAATATTATATTCATAA
1 ATAAATAATATTATATT-ATAA
7984192 ATAAATAATATTATATT-T-A
1 ATAAATAATATTATATTATAA
* *
7984211 ATTAATAATCTATTATATTGGTAA
1 ATAAATAA--TATTATATT-ATAA
* * *
7984235 TATATTATCAATATAATA-TATTA
1 -ATA-AAT-AATATTATATTATAA
*
7984258 ATAAATAATGTTATAATATATTAA
1 ATAAATAATATTAT-AT-TA-TAA
7984282 ATATAAT-ATATTATATTA-ATA
1 ATA-AATAATATTATATTATA-A
* *
7984303 ATAAATTAATA-AATAATATATTA
1 ATAAA-TAATATTAT-AT-TATAA
* *
7984326 ATGAATATTATTATATTAT
1 ATAAATAATATTATATTAT
7984345 TAACAACAAA
Statistics
Matches: 117, Mismatches: 16, Indels: 41
0.67 0.09 0.24
Matches are distributed among these distances:
19 8 0.07
20 10 0.09
21 22 0.19
22 33 0.28
23 16 0.14
24 13 0.11
25 11 0.09
26 2 0.02
27 2 0.02
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAAATAATATTATATTATAA
Found at i:7984285 original size:7 final size:8
Alignment explanation
Indices: 7984248--7984343 Score: 60
Period size: 8 Copynumber: 12.2 Consensus size: 8
7984238 ATTATCAATA
7984248 TAATATAT
1 TAATATAT
*
7984256 TAATA-AA
1 TAATATAT
*
7984263 TAATGT-T
1 TAATATAT
7984270 ATAATATAT
1 -TAATATAT
7984279 TAA-ATA-
1 TAATATAT
7984285 TAATATAT
1 TAATATAT
*
7984293 T-ATATTAA
1 TAATA-TAT
*
7984301 TAATAAAT
1 TAATATAT
*
7984309 TAATA-AA
1 TAATATAT
7984316 TAATATAT
1 TAATATAT
7984324 TAATGAATAT
1 TAAT--ATAT
*
7984334 TATTATAT
1 TAATATAT
7984342 TA
1 TA
7984344 TTAACAACAA
Statistics
Matches: 68, Mismatches: 10, Indels: 20
0.69 0.10 0.20
Matches are distributed among these distances:
6 3 0.04
7 20 0.29
8 34 0.50
9 4 0.06
10 7 0.10
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (8 bp):
TAATATAT
Found at i:7991438 original size:44 final size:45
Alignment explanation
Indices: 7991385--7991470 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
7991375 TGGCGCTGTC
* * *
7991385 AAATCAAATTTTCTGTTATCTATTATTGATGAATTTGTTGTTCAA
1 AAATCAAATTTTCTGTTATCCATGATTGATGAAGTTGTTGTTCAA
* *
7991430 AAAT-AAATTTTGTGTTGTCCATGATTGATGAAGTTGTTGTT
1 AAATCAAATTTTCTGTTATCCATGATTGATGAAGTTGTTGTT
7991471 TAAAGGGTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 32 0.89
45 4 0.11
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (45 bp):
AAATCAAATTTTCTGTTATCCATGATTGATGAAGTTGTTGTTCAA
Found at i:7992137 original size:16 final size:16
Alignment explanation
Indices: 7992104--7992137 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7992094 GCCTTTTTAT
* *
7992104 TTTTTTAATAAGATAA
1 TTTTTTAATAAAAAAA
7992120 TTTTTTAATAAAAAAA
1 TTTTTTAATAAAAAAA
7992136 TT
1 TT
7992138 GATGAGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTTTTAATAAAAAAA
Found at i:7995306 original size:235 final size:234
Alignment explanation
Indices: 7994491--7995835 Score: 1406
Period size: 235 Copynumber: 5.7 Consensus size: 234
7994481 TTTTATTGTC
* * * * *
7994491 AAATTCATTTGGTGAAAAATTTTTTTATGACTTTTTTTATTTTAGGTGATGTTAGAATTTTGTCA
1 AAATTTATTTGGTG-AAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCA
* * * * * * *
7994556 CCAATTTAAAATTTTATCGGTGACAAATTTTTTTCTAATA-ATTTTAGGTAATATTATTAATTAT
65 CCAATTTAAAATTTTATCTGTGATAAA-TGTTTTCTGATAGATTTTAGGTGATGTTATTAATTTT
* * * * * *** *
7994620 TGTCATAAATTGTACATTTTAGTTAATTATTAATAACATTACAATTTTA-TCTTGTCAATTTATG
129 TGTCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAA-TTTAGTCACATCAATGTATG
* * * *
7994684 GTGTTATATAACGATAACATAAATGTTACAAATTTTTACTACC
193 GTGTTATAT-GCGATAACATAAATGTCACAAATTTTTACCACT
* **** ** * * * *
7994727 AAATTTAATTGGT-AAAAAAAATTTGTGATGTTTTTTATTTTA-GTGACATTGTAATTTTATCAT
1 AAATTTATTTGGTGAAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCAC
* *
7994790 CAATTTAAAATTTTATCTGTGACAAACT-TTTT-TGATAGATTTTAAGTGATGTTATTAATTTTT
66 CAATTTAAAATTTTATCTGTGATAAA-TGTTTTCTGATAGATTTTAGGTGATGTTATTAATTTTT
* * * *
7994853 GTCATAAATT-AACA-TCTTAGTTAACTATTAATGACATTACAATTTCGTCACATCAATGTATGG
130 GTCACAAATTGAACACT-TTAGTTAACTATTAATAACATTGCAATTTAGTCACATCAATGTATGG
* * * *
7994916 TATTGTATGACGATAACATAAATATCACAAATTTTTACCATT
194 TGTTATATG-CGATAACATAAATGTCACAAATTTTTACCACT
* * * *
7994958 AAATTTATTTAGTGGGAAA-TTTTTTGTGAC-TTTATTTATTTTAGGTGACATTTTAA-TTTGAT
1 AAATTTATTTGGT-GAAAATTTTTTTGTGACATTT-TTTATTTTAGGTGACGTTATAATTTTG-T
* * * * * * *
7995020 CACCAATTTAGAATTTTCTCTGTGATGAATGTTTTATGATAAATTTTAGGTGACGTTAGTAATTT
63 CACCAATTTAAAATTTTATCTGTGATAAATGTTTTCTGATAGATTTTAGGTGATGTTATTAATTT
* * * * * *
7995085 TTGTCACAAATTAAACACTTTAATTAATTATTAATAACATTGCAATTTAGGCACATCAGTTTATG
128 TTGTCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAATTTAGTCACATCAATGTATG
* * * * *
7995150 ATGTTATATGTGATAGCATAAATGTCACAAACTTTTACCACG
193 GTGTTATATGCGATAACATAAATGTCACAAATTTTTACCACT
* * *
7995192 AAATTTATTTCGTGAAAATTTTTTTTGTGACATTTTTTATTTTATGTGACGTTATAATTTTGTTA
1 AAATTTATTTGGTGAAAA-TTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCA
* * *
7995257 TCAATTTAAAATTTTATCTATGATAAAT-TTGTTCTTATAGATTTTAGGTGATGTTATTAATTTT
65 CCAATTTAAAATTTTATCTGTGATAAATGTT-TTCTGATAGATTTTAGGTGATGTTATTAATTTT
* * * *
7995321 TATCACAAATTGAACACTTTAGTTAACTATTAATAACAATGCTATTTCA-TCACATCAATATATG
129 TGTCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAATTT-AGTCACATCAATGTATG
** * * * *
7995385 GTACTATATGGTGATAATACAAATGTTACAAATTTTTACCACT
193 GTGTTATAT-GCGATAACATAAATGTCACAAATTTTTACCACT
* *
7995428 AAATTTATTTGGTGAAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTATCAT
1 AAATTTATTTGGTGAAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCAC
* * *
7995493 CAATTTAAAATTTTATCTGTAATAAATGTTTTCTGATAGATTTTAAGTGACGTTATTAATTTTTG
66 CAATTTAAAATTTTATCTGTGATAAATGTTTTCTGATAGATTTTAGGTGATGTTATTAATTTTTG
* * * ** * * *
7995558 TCACAAATTGAACACTTTAGTTTATTATTAATGATGTTGCAATTTTGTTACATCAATGTATAGTG
131 TCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAATTTAGTCACATCAATGTATGGTG
* * * * *
7995623 TTATATGACAATAATATAAATATCACAAACTTTTACGA-T
196 TTATATG-CGATAACATAAATGTCACAAATTTTTACCACT
* ** * *
7995662 CAAATTTATTTGGTGAAAATTTATTTGTGATTTTTTTTATTTTAGGTGATGTTATAATTTTGTAA
1 -AAATTTATTTGGTGAAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCA
* * * *
7995727 CCAATTTAAAA-TTTATCTGTGATGAATGTTTTTTGATAGATTTTAGATGATGTTATGAATTTTT
65 CCAATTTAAAATTTTATCTGTGATAAATGTTTTCTGATAGATTTTAGGTGATGTTATTAATTTTT
* * **
7995791 ATCACAAATTGAACATTTTAGTTAACTATTAATGGCATTGCAATT
130 GTCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAATT
7995836 CATGACAATA
Statistics
Matches: 926, Mismatches: 159, Indels: 50
0.82 0.14 0.04
Matches are distributed among these distances:
230 4 0.00
231 90 0.10
232 55 0.06
233 88 0.10
234 184 0.20
235 439 0.47
236 66 0.07
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (234 bp):
AAATTTATTTGGTGAAAATTTTTTTGTGACATTTTTTATTTTAGGTGACGTTATAATTTTGTCAC
CAATTTAAAATTTTATCTGTGATAAATGTTTTCTGATAGATTTTAGGTGATGTTATTAATTTTTG
TCACAAATTGAACACTTTAGTTAACTATTAATAACATTGCAATTTAGTCACATCAATGTATGGTG
TTATATGCGATAACATAAATGTCACAAATTTTTACCACT
Found at i:7995995 original size:216 final size:210
Alignment explanation
Indices: 7995627--7996051 Score: 715
Period size: 216 Copynumber: 2.0 Consensus size: 210
7995617 ATAGTGTTAT
* *
7995627 ATGACAATAATATAAATATCACAAACTTTTACGATCAAATTTATTTGGTGAAAATTTATTTGTGA
1 ATGACAATAATATAAATATCACAAACTTTTACAATCAAATTTATTTAGTGAAAATTTATTTGTGA
*
7995692 TTTTTTTTATTTTAGGTGATGTTATAATTTTGTAACCAATTTAAAATTTATCTGTGATGAATGTT
66 TTTTTTTTATTTTAGGTGATGTTATAATTTTGTAACCAATTTAAAATTTATCTATGATGAATGTT
7995757 TTTTGATAGATTTTAGATGATGTTATGAATTTTTATCACAAATTGAACATTTTAGTTAACTATTA
131 TTTTGATAGATTTTAGATGATGTTATGAATTTTTATCACAAATTGAACATTTTAGTTAACTATTA
7995822 ATGGCATTGCAATTC
196 ATGGCATTGCAATTC
* * *
7995837 ATGACAATAATATAGATATTACAAACTTTTACAATCAAATTTATTTAGTGAAAATTTTTTTATGG
1 ATGACAATAATATAAATATCACAAACTTTTACAATCAAATTTATTTAGTGAAAA-TTTATT-T-G
**
7995902 TTTTTTTTTTTTTAATTTTAGGTGATGTTATAATTTTGTAACCAATTTAAAATTTATCTATGATG
63 --TGATTTTTTTT-ATTTTAGGTGATGTTATAATTTTGTAACCAATTTAAAATTTATCTATGATG
*
7995967 AATGTTTTTTGATAGATTTTAGATGATGTTATGAATTTTTATCATAAATTGAACATTTTAGTTAA
125 AATGTTTTTTGATAGATTTTAGATGATGTTATGAATTTTTATCACAAATTGAACATTTTAGTTAA
7996032 CTATTAATGGCATTGCAATT
190 CTATTAATGGCATTGCAATT
7996052 TCATCACGTC
Statistics
Matches: 200, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
210 50 0.25
211 5 0.03
212 1 0.00
213 1 0.00
215 9 0.05
216 134 0.67
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (210 bp):
ATGACAATAATATAAATATCACAAACTTTTACAATCAAATTTATTTAGTGAAAATTTATTTGTGA
TTTTTTTTATTTTAGGTGATGTTATAATTTTGTAACCAATTTAAAATTTATCTATGATGAATGTT
TTTTGATAGATTTTAGATGATGTTATGAATTTTTATCACAAATTGAACATTTTAGTTAACTATTA
ATGGCATTGCAATTC
Found at i:8000998 original size:200 final size:199
Alignment explanation
Indices: 8000504--8001264 Score: 876
Period size: 199 Copynumber: 3.8 Consensus size: 199
8000494 GTTAATTGTA
* * * *
8000504 TCACCAATATTGTGACGATTTACCTTTCGTCACTAATATATCAAAATTTATCATTTATTTTATTA
1 TCACCAATATTGTAACGATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTAA
* * * * *
8000569 CGATTATAGCATTT-AATGACTTTTTTTTCATATAA-AGTTAATG-AAATCTAATGTCATGAAAG
66 CAATTATAGC-TTTCAATGAATTTTTTTTCATA-AATAGCTAACGAAAAT-TAACGTCAT-AAA-
* * *
8000631 AAAAAGTATAAGGTGATGTTTGATTTTATTATCACATTCGACGTTATCTTATAATCACTT-GTGA
126 AAAAAGTATAAGGTGACGTTTGATTTTATTATCACATTTGACATTATCTTATAATCA-TTGGTGA
* *
8000695 CGTTAATTGTG
190 TGATAA-TGTG
* * * * * *
8000706 TAACCAATATTGTGATGATTTATCTTTTGTCACTAATATATCATATTTTATCATTTATTTTGTAA
1 TCACCAATATTGTAACGATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTAA
* * * * *
8000771 CGATTATAGCTTTCAATG-ATGTTTTTTCATAAATAGCTGACGAAAATTAACGTTACCAAAAAAA
66 CAATTATAGCTTTCAATGAATTTTTTTTCATAAATAGCTAACGAAAATTAACGTCA-TAAAAAAA
* **
8000835 AGTATAAGGTGATGTTTGATTTTATTATCGTATTTGACATTATCTTATAATCATTGGTGATGATA
130 AGTATAAGGTGACGTTTGATTTTATTATCACATTTGACATTATCTTATAATCATTGGTGATGATA
8000900 AT-TG
195 ATGTG
*
8000904 TCACCAATATTGTAACAATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTAA
1 TCACCAATATTGTAACGATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTAA
* * * * * *
8000969 CAATTATAACTTTTAATGACATTTTTTTTCATAAATAGTTGATGAAAACTAACGTCATAAAAAAA
66 CAATTATAGCTTTCAATGA-ATTTTTTTTCATAAATAGCTAACGAAAATTAACGTCATAAAAAAA
* * *
8001034 A-TCATAAGGTGACATTTGATTTTATTATCACATTTGATATTATCTTACAAAT-ATTGGTGATGA
130 AGT-ATAAGGTGACGTTTGATTTTATTATCACATTTGACATTATCTTA-TAATCATTGGTGATGA
8001097 TAAATGTG
193 T-AATGTG
* * * *** *
8001105 TCACTAATATTG-ATACGATTTATCTTTTGTCACTAATATATTGGATTTTATCATTTATTTTGTG
1 TCACCAATATTGTA-ACGATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTA
* * * *
8001169 ACAATTATAGCCTTCAAT-AACTTTTTTTCATAAATAGCTAACGAAAATTAACCTAATAAAAAAA
65 ACAATTATAGCTTTCAATGAATTTTTTTTCATAAATAGCTAACGAAAATTAACGTCATAAAAAAA
* *
8001233 AGTATAAGATGACGTTTGATTTTATTGTCACA
130 AGTATAAGGTGACGTTTGATTTTATTATCACA
8001265 ACAAATTCAC
Statistics
Matches: 481, Mismatches: 65, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
198 76 0.16
199 127 0.26
200 104 0.22
201 99 0.21
202 75 0.16
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (199 bp):
TCACCAATATTGTAACGATTTACCTTTCGTCACTAATATATCAAATTTTATCATTTATTTTGTAA
CAATTATAGCTTTCAATGAATTTTTTTTCATAAATAGCTAACGAAAATTAACGTCATAAAAAAAA
GTATAAGGTGACGTTTGATTTTATTATCACATTTGACATTATCTTATAATCATTGGTGATGATAA
TGTG
Found at i:8007542 original size:13 final size:13
Alignment explanation
Indices: 8007521--8007554 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8007511 TAAATAAGAG
*
8007521 AATAATTATACGA
1 AATAATTATACAA
*
8007534 AATAGTTATACAA
1 AATAATTATACAA
8007547 AATAATTA
1 AATAATTA
8007555 CAAATTTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (13 bp):
AATAATTATACAA
Found at i:8007567 original size:21 final size:22
Alignment explanation
Indices: 8007543--8007584 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8007533 AAATAGTTAT
8007543 ACAAA-ATAATTACAAATTTAC
1 ACAAACATAATTACAAATTTAC
* *
8007564 ACAAACATATTTACAATTTTA
1 ACAAACATAATTACAAATTTA
8007585 AATTTTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
ACAAACATAATTACAAATTTAC
Found at i:8007593 original size:15 final size:15
Alignment explanation
Indices: 8007573--8007606 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8007563 CACAAACATA
**
8007573 TTTACAATTTTAAAT
1 TTTACAATTCAAAAT
8007588 TTTACAATTCAAAAT
1 TTTACAATTCAAAAT
8007603 TTTA
1 TTTA
8007607 TTTTTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTACAATTCAAAAT
Found at i:8010413 original size:39 final size:38
Alignment explanation
Indices: 8010326--8010413 Score: 104
Period size: 39 Copynumber: 2.3 Consensus size: 38
8010316 TGACCAAGAG
* * * *
8010326 AAAACCAAATTTTGAAACAAAATGAAAATGGCCTAGAT
1 AAAACCAAAGTTTGAAAAAAAATGAAAATGACATAGAT
* * *
8010364 GAAACTAAAGTTTGAAAAAAAAATGAAAATGACATGGAT
1 AAAACCAAAGTTTG-AAAAAAAATGAAAATGACATAGAT
8010403 AAAACCAAAGT
1 AAAACCAAAGT
8010414 AAGCGAATGC
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
38 11 0.28
39 29 0.73
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (38 bp):
AAAACCAAAGTTTGAAAAAAAATGAAAATGACATAGAT
Found at i:8010471 original size:43 final size:43
Alignment explanation
Indices: 8010424--8010552 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
8010414 AAGCGAATGC
* * * *
8010424 AATAAATGAAAATGACTTAGACGAAATCAAAGTCTGAAAATAA
1 AATAAATGAAAATGACTTAGACAAAACCAAAATCTAAAAATAA
* * *
8010467 AATAAATAAAAATGACTTGGACAAAACCAAAATCTAAAAATAG
1 AATAAATGAAAATGACTTAGACAAAACCAAAATCTAAAAATAA
* * * *
8010510 AATAAATGTAAATGACTTGGAC-AAACCTAAAGTTTAAAAATAA
1 AATAAATGAAAATGACTTAGACAAAACC-AAAATCTAAAAATAA
8010553 GATGATCGAG
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 5 0.07
43 68 0.93
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.22
Consensus pattern (43 bp):
AATAAATGAAAATGACTTAGACAAAACCAAAATCTAAAAATAA
Found at i:8010625 original size:34 final size:34
Alignment explanation
Indices: 8010582--8010653 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
8010572 CTAGTGTATG
* * *
8010582 AATGCAACGATCAAGATAAAATCACAAGTTTGAA
1 AATGCAACGATCAAGACAAAATCACAAGTCTAAA
***
8010616 AATGCAACGATGGGGACAAAATCACAAGTCTAAA
1 AATGCAACGATCAAGACAAAATCACAAGTCTAAA
8010650 AATG
1 AATG
8010654 TAATGATTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (34 bp):
AATGCAACGATCAAGACAAAATCACAAGTCTAAA
Found at i:8012458 original size:8 final size:8
Alignment explanation
Indices: 8012445--8012491 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
8012435 TATCACATCG
8012445 TTTTTTTC
1 TTTTTTTC
8012453 TTTTTTTGC
1 TTTTTTT-C
8012462 TTTTTTTC
1 TTTTTTTC
8012470 TTTTTTT-
1 TTTTTTTC
* *
8012477 ATTTCTTC
1 TTTTTTTC
8012485 TTTTTTT
1 TTTTTTT
8012492 GAGAAAGGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 5 0.15
8 20 0.61
9 8 0.24
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTTTC
Found at i:8020202 original size:21 final size:21
Alignment explanation
Indices: 8020176--8020222 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
8020166 TGTCTTCTCT
8020176 ATCTTTGGATAATACAGATCC
1 ATCTTTGGATAATACAGATCC
8020197 ATCTTTGGATAATACAGATCC
1 ATCTTTGGATAATACAGATCC
8020218 ATCTT
1 ATCTT
8020223 CAAACAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (21 bp):
ATCTTTGGATAATACAGATCC
Found at i:8022614 original size:21 final size:19
Alignment explanation
Indices: 8022588--8022630 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8022578 CATAAAATTT
*
8022588 AAAAATATTGAAAATTATAAA
1 AAAAATA-TGAAAAAT-TAAA
8022609 AAAAATATGAAAAATTAAA
1 AAAAATATGAAAAATTAAA
8022628 AAA
1 AAA
8022631 TCCAAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAAATATGAAAAATTAAA
Found at i:8022619 original size:20 final size:21
Alignment explanation
Indices: 8022588--8022630 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8022578 CATAAAATTT
8022588 AAAAATATTG-AAAATTATAAA
1 AAAAATATTGAAAAATTA-AAA
8022609 AAAAATA-TGAAAAATTAAAA
1 AAAAATATTGAAAAATTAAAA
8022629 AA
1 AA
8022631 TCCAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AAAAATATTGAAAAATTAAAA
Found at i:8022637 original size:28 final size:30
Alignment explanation
Indices: 8022606--8022674 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 30
8022596 TGAAAATTAT
8022606 AAAAAAAATATGAAAAATT-AAAAAAT-CC
1 AAAAAAAATATGAAAAATTAAAAAAATCCC
** * *
8022634 AAAAAACTTAAGAAAATTTAAAAAAATCCC
1 AAAAAAAATATGAAAAATTAAAAAAATCCC
*
8022664 CAAAAAAATAT
1 AAAAAAAATAT
8022675 ACTTCTTAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
28 15 0.48
29 7 0.23
30 9 0.29
ACGTcount: A:0.68, C:0.10, G:0.03, T:0.19
Consensus pattern (30 bp):
AAAAAAAATATGAAAAATTAAAAAAATCCC
Found at i:8022955 original size:19 final size:19
Alignment explanation
Indices: 8022931--8022971 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8022921 ATAAAAAATC
*
8022931 AATTTTTCAAAATTTTATA
1 AATTTTCCAAAATTTTATA
*
8022950 AATTTTCCAAAATTTTTTA
1 AATTTTCCAAAATTTTATA
8022969 AAT
1 AAT
8022972 ATTAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTTTCCAAAATTTTATA
Found at i:8023119 original size:13 final size:12
Alignment explanation
Indices: 8023101--8023156 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
8023091 TTTTTAAATA
8023101 TTAAATTAAATTT
1 TTAAATT-AATTT
*
8023114 TTAAA-TATTTT
1 TTAAATTAATTT
**
8023125 TTAAAAAAATTT
1 TTAAATTAATTT
*
8023137 TAAAATTAATTT
1 TTAAATTAATTT
8023149 TTAGAATT
1 TTA-AATT
8023157 TGTTATTCCT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
11 9 0.26
12 16 0.47
13 9 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
TTAAATTAATTT
Found at i:8023214 original size:26 final size:24
Alignment explanation
Indices: 8023140--8023214 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
8023130 AAAATTTTAA
* * *
8023140 AATTAATTTTTAGAATTTGTTATTC
1 AATTAAATTTTA-AATTTTTTATTT
**
8023165 CTTTAAATTTTAAATTTTTTATTT
1 AATTAAATTTTAAATTTTTTATTT
*
8023189 AATTAAATTATTTAATTTTGTTATTT
1 AATTAAATT-TTAAATTTT-TTATTT
8023215 GGTTTTTGGA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 17 0.43
25 17 0.43
26 6 0.15
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (24 bp):
AATTAAATTTTAAATTTTTTATTT
Found at i:8023545 original size:2 final size:2
Alignment explanation
Indices: 8023538--8023585 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
8023528 TTTAACCCAT
*
8023538 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8023579 TA TA TA T
1 TA TA TA T
8023586 GTAGAGATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8023658 original size:2 final size:2
Alignment explanation
Indices: 8023651--8023718 Score: 100
Period size: 2 Copynumber: 34.0 Consensus size: 2
8023641 TTTAATACAT
* * *
8023651 TA TA TA TA TA TA TA TA CA TA TG TA TA TA TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8023693 TA TA TG TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8023719 GAGAGAGAGA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8023723 original size:2 final size:2
Alignment explanation
Indices: 8023718--8023742 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8023708 ATATATATAT
8023718 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
8023743 AAGTTACCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8030972 original size:128 final size:127
Alignment explanation
Indices: 8030754--8031003 Score: 317
Period size: 128 Copynumber: 2.0 Consensus size: 127
8030744 ATTTTCGACA
* * *
8030754 AAAAAAGCCCTTAATAATCCATAAAAAGAATATGAAACGGATTCTTGAAGGCGTTTTTGGCTGAA
1 AAAAAAGCCCTTAATAATCCATAAAAAGAAGATGAAACGGATTCTTGAAGGCGATTTTGGCTCAA
* *
8030819 AGCGCCTTCAATAACCCAATTAATAAATTTTTAGTTGAGATTATTAAAGGTGATTTTTTATT
66 AACGCCTTCAATAACCCAATTAATAAATTTTTAGATGAGATTATTAAAGGTGATTTTTTATT
* * * *
8030881 AAAAAAGCACCTTCAATAATCTATACAAAA-AAGCTGGAATGGATTCTTGAAGGC-ATTTTGGCT
1 AAAAAAGC-CCTT-AATAATCCATA-AAAAGAAGATGAAACGGATTCTTGAAGGCGATTTTGGCT
* *** *
8030944 CAAAACGCCTTTAATATTTC-ATATAATAAATTTTTAGATGGGATTATTAAAGGTGATTTT
63 CAAAACGCCTTCAATAACCCAAT-TAATAAATTTTTAGATGAGATTATTAAAGGTGATTTT
8031004 GGTCGAAAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
127 10 0.10
128 61 0.58
129 30 0.29
130 4 0.04
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (127 bp):
AAAAAAGCCCTTAATAATCCATAAAAAGAAGATGAAACGGATTCTTGAAGGCGATTTTGGCTCAA
AACGCCTTCAATAACCCAATTAATAAATTTTTAGATGAGATTATTAAAGGTGATTTTTTATT
Found at i:8031582 original size:305 final size:301
Alignment explanation
Indices: 8030754--8031704 Score: 1007
Period size: 307 Copynumber: 3.1 Consensus size: 301
8030744 ATTTTCGACA
* * * **
8030754 AAAAAAGCCCTTAATAATCCATAA-AAAGAATA-TGAAACGGATTCTTGAAGGCGTTTTTGGCTG
1 AAAAATGCCCTTAATAATCCATAAGAAA-AATATTG-AA-GAATTCTTGAAGGCATTTTTGGCCA
* * * *
8030817 AAAGCGCCTTCAATAACCCAATTAATAAATTTTTAGTTGAGATTATTAAAGGTGATTTTTTATTA
63 AAAGCGCCTTCAATAATCCAATCAATAAATTTTTAGTTGAGATTATTGAAGGTGA-TTTTTGTT-
* * * * * *
8030882 AAAAAGCACCTTCAATAATCTATACAAAAAAGCTGGAATGGATTCTTGAAGGCATTTTGGCTCAA
126 AAAAA-CACCTTCAATAATCCATACAAAAAAGCTTGAATGGATTCTTAAAGACTTTTTGGCCCAA
* * * * * * *
8030947 AACGCCTTTAATATTTCATATAATAAATTTTTAGATGGGATTATTAAAGGTGATTTTGGTCGAAA
190 AAC-ACTTTAATATTTCACACAATAAATTTTTAGGTAGGATTATTAAAGGT-ATTTTAGTCAAAA
* * * *
8031012 ATACTTTCAATAACATTTTGTTAGGGATTATTCAAGGCATTCTCTTGGT
253 ATGCCTTCAATAACATTTTGTTAGGGATTATTCAAGGCATTTTCTTGCT
* * * * *
8031061 AACAATGCCCTTAATAATCCAT-AGAAAAAATATAGAACAGATTCTTGAAGGCTTTTTTTGGTCG
1 AAAAATGCCCTTAATAATCCATAAG-AAAAATATTGAAGA-ATTCTTGAAGGC-ATTTTTGG-CC
* * * * ** *
8031125 AAAAGTGCCTTCAATAATCCAATCAATAAATTTTTAGTTGGGATTACTGAATGCAATTTTTGTCA
62 AAAAGCGCCTTCAATAATCCAATCAATAAATTTTTAGTTGAGATTATTGAAGGTGATTTTTGTTA
* * * * * * *
8031190 AAAGCGCCTTTAATAATCCATACAAAAAAGTTTGAACGGATTCTTAAATGTA-TTTTTTGCCTAA
127 AAAACACCTTCAATAATCCATACAAAAAAGCTTGAATGGATTCTTAAA-G-ACTTTTTGGCCCAA
* * *
8031254 AACACTTTTAATATTTCACACAATAAATTTTTAGGTTGGATTATTTAAGGCTATTTTAATCAAAA
190 AACAC-TTTAATATTTCACACAATAAATTTTTAGGTAGGATTATTAAAGG-TATTTTAGTCAAAA
* ** *
8031319 ATGCCTTCAATAACATTTTGTTAGGGATTATTCAATGTGTTTTCTTACT
253 ATGCCTTCAATAACATTTTGTTAGGGATTATTCAAGGCATTTTCTTGCT
* *
8031368 AAAAATGCTCTTAATAATCCATAAGAAAAATATTGAATGAATTTTTGAAGGCATTTTTGGCCAAA
1 AAAAATGCCCTTAATAATCCATAAGAAAAATATTGAA-GAATTCTTGAAGGCATTTTTGGCCAAA
* * *
8031433 AACGCCTTCAATAATCCAATCAATAAAATTTTAGTTAAGATTATTGAAGGTGATTTTTGTTAAAA
65 AGCGCCTTCAATAATCCAATCAATAAATTTTTAGTTGAGATTATTGAAGGTGATTTTTGTTAAAA
* * *
8031498 ATACCTTCAATAATCCATACAAAAAAG-TTGAATTGGATTCTCAAAGACGTTTTTGGCCCAAAAT
130 ACACCTTCAATAATCCATACAAAAAAGCTTGAA-TGGATTCTTAAAGAC-TTTTTGGCCCAAAAC
* * *
8031562 ATCTTTAATA-TTCAACACAATAAATTTTTAGGTAGGATTATTGAAGATAGTTTTAGTAAAAAAA
193 A-CTTTAATATTTC-ACACAATAAATTTTTAGGTAGGATTATTAAAGGTA-TTTTAGT-CAAAAA
* * * *
8031626 TGCCTTTAATGACATTTTGTTTGGGATTTTTCAAGGCATTTTCTTGCT
254 TGCCTTCAATAACATTTTGTTAGGGATTATTCAAGGCATTTTCTTGCT
* *
8031674 AAAAATG-CCTTCATTAATCCCATAAAAAAAA
1 AAAAATGCCCTT-AATAAT-CCATAAGAAAAA
8031705 CTTATTTTTG
Statistics
Matches: 532, Mismatches: 91, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
303 1 0.00
304 11 0.02
305 151 0.28
306 104 0.20
307 197 0.37
308 21 0.04
309 47 0.09
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (301 bp):
AAAAATGCCCTTAATAATCCATAAGAAAAATATTGAAGAATTCTTGAAGGCATTTTTGGCCAAAA
GCGCCTTCAATAATCCAATCAATAAATTTTTAGTTGAGATTATTGAAGGTGATTTTTGTTAAAAA
CACCTTCAATAATCCATACAAAAAAGCTTGAATGGATTCTTAAAGACTTTTTGGCCCAAAACACT
TTAATATTTCACACAATAAATTTTTAGGTAGGATTATTAAAGGTATTTTAGTCAAAAATGCCTTC
AATAACATTTTGTTAGGGATTATTCAAGGCATTTTCTTGCT
Found at i:8031767 original size:35 final size:35
Alignment explanation
Indices: 8031721--8031792 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
8031711 TTTGTATATG
*
8031721 TGAAGTCAGTTATAGGTTTACACCCAAAAAACATT
1 TGAAGTCAGTTATAGATTTACACCCAAAAAACATT
** *
8031756 TGAAGTCAGTTATAGATTTATGCCCAAAAAATATT
1 TGAAGTCAGTTATAGATTTACACCCAAAAAACATT
8031791 TG
1 TG
8031793 GTTTATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (35 bp):
TGAAGTCAGTTATAGATTTACACCCAAAAAACATT
Found at i:8035537 original size:247 final size:240
Alignment explanation
Indices: 8034969--8035829 Score: 880
Period size: 238 Copynumber: 3.6 Consensus size: 240
8034959 AAATTTTAAA
* * * * * *
8034969 AAAAATTATTAAAGGCGTATAATGCAAAAAATGCCTTCAATAAATTTTTTCAAAAATTAGAACGA
1 AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCTTAAAAAATCATAACGA
* * * * *
8035034 ATTAGTGATGGCATTGTTCTAGAAT-AATCGCCTTTAATAACCCCAT-TT-AAATTTTACTAGTG
66 ATTAGTGAAGGCATTTTTCTAGAATAAAT-GCCTTCAATAA--CCATCTTAAAATGTTAGTAGTG
** ** * *
8035096 AAATATTGAATGTATTTTTTACTAGAAGACACCTTTAATAATTTCAAACAATTTTTTTAAA-AAA
128 AAATATTGAATGCGTTTTTTACTAGAAGACACCTTTAATAATCCCAAACAAATTTTTAAAAGAAA
* ** * *
8035160 ATTATTGAAGG-TGTTTGTTCTAAAAATATGTATTCAATAATTCTGTAA
193 ATTATTGAAGGTTGTTT-TTCTAAAAAAATGCCTTCAATAATTATGTAC
* * * * *
8035208 AAAAATTATTGAAGG-ATATAATGTAAAAAATATCTTCAATAAATTTCTTCAAAAATCAAAACGA
1 AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCTTAAAAAATCATAACGA
* * * *
8035272 ATTAGTGAATGTATTTTTCTAGAATAAATGCCTTTACTAACCATCTTAAAATGTTAGTAGTGAAA
66 ATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCAATAACCATCTTAAAATGTTAGTAGTGAAA
* *
8035337 TACTGAATGCGTTTTTCACTAGAAGACACCTTTAATAATCCCAAACAAATTTTTAAAAGAAAATT
131 TATTGAATGCGTTTTTTACTAGAAGACACCTTTAATAATCCCAAACAAATTTTTAAAAGAAAATT
*
8035402 ATTGAAGGTGTTAGGCGTTTATTCTAAAAAAATGCCTTCAATAATTTTGTAC
196 ATTGAA-G-GTT----GTTT-TTCTAAAAAAATGCCTTCAATAATTATGTAC
* * * *
8035454 AAAAATTATTGAAGGCGTATAATGCAAAAAACACTTTCAATAAATTTCTTAAAAAATCATAACGA
1 AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCTTAAAAAATCATAACGA
* * * * *
8035519 ATTAGTGAAGCCATTTTTCT-GAAATAAATACCTTCACTAACCATCTTAAAATGTTAGTAATGGA
66 ATTAGTGAAGGCATTTTTCTAG-AATAAATGCCTTCAATAACCATCTTAAAATGTTAGTAGTGAA
* * * ** * * *
8035583 ATATTGAAGGCGTTTTTTATTAGAAAATGCCTTTAATAATCCCTAAC-ACTTTTTAAATGAAAAT
130 ATATTGAATGCGTTTTTTACTAGAAGACACCTTTAATAATCCCAAACAAATTTTTAAAAGAAAAT
* * ** * * **
8035647 TATTGAAAGCATT-TTTTTCTGATGAAACGCCTTTAATAATTACCTAC
195 TATTG-AAG-GTTGTTTTTCTAAAAAAATGCCTTCAATAATTATGTAC
* * *
8035694 AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCATAAAAAAT-TTGAACA
1 AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCTTAAAAAATCAT-AACG
* * * * * * * *
8035758 AATTAGTGGAGGCA-TTTTCTAAAATAAACGCCTTCAATAACCGTATTAAATTTTTAGTAGTGGA
65 AATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCAATAACCATCTTAAAATGTTAGTAGTGAA
8035822 ATATTGAA
130 ATATTGAA
8035830 GGTGTATAAT
Statistics
Matches: 525, Mismatches: 81, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
236 4 0.01
237 2 0.00
238 138 0.26
239 78 0.15
240 91 0.17
241 4 0.01
242 1 0.00
246 69 0.13
247 138 0.26
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (240 bp):
AAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCTTAAAAAATCATAACGA
ATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCAATAACCATCTTAAAATGTTAGTAGTGAAA
TATTGAATGCGTTTTTTACTAGAAGACACCTTTAATAATCCCAAACAAATTTTTAAAAGAAAATT
ATTGAAGGTTGTTTTTCTAAAAAAATGCCTTCAATAATTATGTAC
Found at i:8036068 original size:223 final size:224
Alignment explanation
Indices: 8035680--8036128 Score: 846
Period size: 223 Copynumber: 2.0 Consensus size: 224
8035670 GAAACGCCTT
* *
8035680 TAATAATTACCTACAAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTTCATA
1 TAATAATTACCTAAAAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTCCATA
*
8035745 AAAAATTTGAACAAATTAGTGGAGGCATTTTCTAAAATAAACGCCTTCAATAACCGTATTAAATT
66 AAAAATTTGAACAAATTAGTGGAGGCATTTTCTAAAATAAACGCCTTCAATAACCGTATTAAACT
8035810 TTTAGTAGTGGAATATTGAAGGTGTATAATGCAAAAAACACCTTTAATAAATTCCTTTAAAAAGT
131 TTTAGTAGTGGAATATTGAAGGTGTATAATGCAAAAAACACCTTTAATAAATTCCTTTAAAAAGT
8035875 AAAATAAATTAGTGAAGGCA-TTTTTTAC
196 AAAATAAATTAGTGAAGGCATTTTTTTAC
8035903 TAATAATTACCTAAAAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTCCATA
1 TAATAATTACCTAAAAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTCCATA
*
8035968 AAAAATTTGAACAAATTAGTGGAGGCATTTTCTGAAATAAACGCCTTCAATAACCGTATTAAACT
66 AAAAATTTGAACAAATTAGTGGAGGCATTTTCTAAAATAAACGCCTTCAATAACCGTATTAAACT
*
8036033 TTTAGTAGTGGAATATTGAAGGTGTATAATGCAAAACACACCTTTAATAAATTCCTTTAAAAAGT
131 TTTAGTAGTGGAATATTGAAGGTGTATAATGCAAAAAACACCTTTAATAAATTCCTTTAAAAAGT
8036098 AAAATAAATTAGTGAAGGCATTTTTTTAC
196 AAAATAAATTAGTGAAGGCATTTTTTTAC
8036127 TA
1 TA
8036129 GAAGAAGCCT
Statistics
Matches: 220, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
223 210 0.95
224 10 0.05
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (224 bp):
TAATAATTACCTAAAAAAATTATTAAAGGCATATAATGCAAAAAATACCTTCAATAAATTCCATA
AAAAATTTGAACAAATTAGTGGAGGCATTTTCTAAAATAAACGCCTTCAATAACCGTATTAAACT
TTTAGTAGTGGAATATTGAAGGTGTATAATGCAAAAAACACCTTTAATAAATTCCTTTAAAAAGT
AAAATAAATTAGTGAAGGCATTTTTTTAC
Found at i:8036452 original size:239 final size:236
Alignment explanation
Indices: 8036110--8036886 Score: 852
Period size: 239 Copynumber: 3.3 Consensus size: 236
8036100 AATAAATTAG
* * *
8036110 TGAAGGCATTTTTTTACTAGAAGAAGCCTTTAATAATCTTAAATAAATTTTTAAAAGAAAATTAT
1 TGAATGCA-TTTTTTACTAGAAGATGCCTTTAATAATCCTAAAT-AATTTTTAAAAG-AAATTAT
* * * * *
8036175 TGAAAGCGTTTGTTCTAAAAAAATACCTTCAATAATTCTGTACAAAAATTATTGAAGGTGTAAAA
63 TGAAGGCATTTGTTCTAAAAAAAT-CTTTCAATAATTCTATACAAAAATTATTGAAGGTGTATAA
* *
8036240 TACAAAAAACGCCTTCAATAAATTCCTTCAAAAATCAAAACAAATTAATGAAGGTGTTTTTCTAG
127 TACAAAAAACGCCTTCAATAAATTCCTTCAAAAATCAAAACAAATTAGTGAAGGTATTTTTCTAG
* *
8036305 AATAAATGCCTTCACTAACCATATTAAAATATTACTAGTGAAATAT
192 AATAAATGCCTTCACTAACCATCTTAAAAT-TTAGTAGTGAAATAT
*
8036351 TGAATGTATTTTTTACTAGAAGATGCCTTTAATAATCCTAAATAATTTTTAAAAAGAAATTATTG
1 TGAATGCATTTTTTACTAGAAGATGCCTTTAATAATCCTAAATAATTTTT-AAAAGAAATTATTG
* * * *
8036416 AAGGCATTTGTTCTCAAAAAATGCTTTCAATAATTCTATACAAAAATTATTAAAGGTATATAATG
65 AAGGCATTTGTTCTAAAAAAAT-CTTTCAATAATTCTATACAAAAATTATTGAAGGTGTATAATA
* * * *
8036481 TAAAAAACGCCTTCAATAAATTCCTTCAAAATTCATAACAAATTAGTGAAGGTATTTTT-TTGAA
129 CAAAAAACGCCTTCAATAAATTCCTTCAAAAATCAAAACAAATTAGTGAAGGTATTTTTCTAG-A
* **
8036545 ATAAACGCCTTCACTAACTGTCTTAAAATGTTAGTAGT-AGAATAT
193 ATAAATGCCTTCACTAACCATCTTAAAAT-TTAGTAGTGA-AATAT
* * *
8036590 TGAAAGCGTTTTTTACTAGAAGATGCCTTTAATAATCC----------TT--AACAAATTATTGA
1 TGAATGCATTTTTTACTAGAAGATGCCTTTAATAATCCTAAATAATTTTTAAAAGAAATTATTGA
* * * * *
8036643 AGGCGTTTGTTCTAAAAAAAATATCTTCAATAGTTCTATATAAAAATTATTGAAGGCGTATAATA
66 AGGCATTTGTTCT-AAAAAAATCT-TTCAATAATTCTATACAAAAATTATTGAAGGTGTATAATA
* * * * * * *
8036708 CAAAAAACACTTTCAATAAAAT-CTTCCAAAAATTAAAACGAATTAGTGAATGCATTTTTCTAGA
129 CAAAAAACGCCTTCAATAAATTCCTT-CAAAAATCAAAACAAATTAGTGAAGGTATTTTTCTAGA
* * *
8036772 ATAAATGCCTTCAATAA-CA-CTTAAAATTTGGTAGTGAAATAG
193 ATAAATGCCTTCACTAACCATCTTAAAATTTAGTAGTGAAATAT
* * * * * * *
8036814 TAAATGCATTTTCTA-TAGAAGACGCATTTAATAATCCCAAACAATTTTTTAAAAAAAATTATTG
1 TGAATGCATTTTTTACTAGAAGATGCCTTTAATAATCCTAAATAA-TTTTTAAAAGAAATTATTG
*
8036878 AATGCATTT
65 AAGGCATTT
8036887 TTAGTAAGAA
Statistics
Matches: 450, Mismatches: 65, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
223 20 0.04
224 22 0.05
225 9 0.02
226 28 0.06
227 102 0.23
228 2 0.00
229 2 0.00
234 2 0.00
236 18 0.04
238 3 0.01
239 198 0.44
240 38 0.08
241 6 0.01
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (236 bp):
TGAATGCATTTTTTACTAGAAGATGCCTTTAATAATCCTAAATAATTTTTAAAAGAAATTATTGA
AGGCATTTGTTCTAAAAAAATCTTTCAATAATTCTATACAAAAATTATTGAAGGTGTATAATACA
AAAAACGCCTTCAATAAATTCCTTCAAAAATCAAAACAAATTAGTGAAGGTATTTTTCTAGAATA
AATGCCTTCACTAACCATCTTAAAATTTAGTAGTGAAATAT
Found at i:8039472 original size:12 final size:12
Alignment explanation
Indices: 8039455--8039485 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8039445 CTTGATGTTT
8039455 AAAATGATGAAA
1 AAAATGATGAAA
*
8039467 AGAATGATGAAA
1 AAAATGATGAAA
8039479 AAAATGA
1 AAAATGA
8039486 CCCCAATGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (12 bp):
AAAATGATGAAA
Found at i:8046960 original size:20 final size:20
Alignment explanation
Indices: 8046943--8046981 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8046933 TAATTTTATT
*
8046943 TAATAAGATTTGAATTTAAA
1 TAATAAGATTTAAATTTAAA
8046963 TAATAAGATTTAAATTTAA
1 TAATAAGATTTAAATTTAA
8046982 TATTTTGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (20 bp):
TAATAAGATTTAAATTTAAA
Found at i:8047043 original size:18 final size:19
Alignment explanation
Indices: 8047010--8047045 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8047000 AAATTCAAAC
*
8047010 AAAATTCTATCAAAAATTG
1 AAAATTCTACCAAAAATTG
8047029 AAAATT-TACCAAAAATT
1 AAAATTCTACCAAAAATT
8047046 TTAAATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAATTCTACCAAAAATTG
Found at i:8048215 original size:3 final size:3
Alignment explanation
Indices: 8048207--8048256 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
8048197 TTATTTTTCC
8048207 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8048255 TA
1 TA
8048257 ATTTTTATGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8048768 original size:2 final size:2
Alignment explanation
Indices: 8048761--8048793 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8048751 TTGTTATAAT
8048761 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8048794 TATATGTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8058839 original size:41 final size:41
Alignment explanation
Indices: 8058793--8058872 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
8058783 TAGTTTAGGG
* *
8058793 TATAGTTATTTTCGTGTGAAAGTTTGTAAACCAATTTAGAT
1 TATAGTTATTTTCGGGTGAAAGTTTATAAACCAATTTAGAT
* * *
8058834 TATAGTTCTTTTTGGGTGAAAGTTTATGAACCAATTTAG
1 TATAGTTATTTTCGGGTGAAAGTTTATAAACCAATTTAG
8058873 GATATAATCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (41 bp):
TATAGTTATTTTCGGGTGAAAGTTTATAAACCAATTTAGAT
Found at i:8058886 original size:41 final size:41
Alignment explanation
Indices: 8058808--8058887 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
8058798 TTATTTTCGT
* * *
8058808 GTGAAAGTTTGTAAACCAATTTAGATTATAGTTCTTTTTGG
1 GTGAAAGTTTATAAACCAATTTAGATTATAATCCTTTTTGG
*
8058849 GTGAAAGTTTATGAACCAATTTAGGA-TATAATCCTTTTT
1 GTGAAAGTTTATAAACCAATTTA-GATTATAATCCTTTTT
8058888 TATTTATAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 32 0.94
42 2 0.06
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (41 bp):
GTGAAAGTTTATAAACCAATTTAGATTATAATCCTTTTTGG
Found at i:8062864 original size:3 final size:3
Alignment explanation
Indices: 8062856--8062894 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8062846 ATTTGTTAAT
8062856 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8062895 ATGGAAGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8067572 original size:19 final size:17
Alignment explanation
Indices: 8067526--8067585 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
8067516 ATATTATACT
8067526 TATAATTTTATAAAAAA
1 TATAATTTTATAAAAAA
* *
8067543 TATATTATTTATAATATAA
1 TATAAT-TTTATAA-AAAA
**
8067562 TAATAATTTTATATTAAA
1 T-ATAATTTTATAAAAAA
8067580 TATAAT
1 TATAAT
8067586 AGTTGACAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 10 0.29
18 10 0.29
19 10 0.29
20 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TATAATTTTATAAAAAA
Found at i:8068110 original size:28 final size:28
Alignment explanation
Indices: 8068049--8068110 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
8068039 TTATATATTA
*
8068049 ATATAATTTTTTATTAAATTAAGATATT
1 ATATAATTTTTTATTAAATTAAGACATT
* *
8068077 AAATAATATTTTTATT-AATATAATACA-T
1 ATATAAT-TTTTTATTAAAT-TAAGACATT
8068105 ATATAA
1 ATATAA
8068111 ATATAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
ATATAATTTTTTATTAAATTAAGACATT
Found at i:8069032 original size:37 final size:34
Alignment explanation
Indices: 8068961--8069032 Score: 83
Period size: 37 Copynumber: 2.0 Consensus size: 34
8068951 TTACTTTATT
* *
8068961 TATTTATCTTGTTATTGTTTTTGTATTCTATTTA
1 TATTTATCTTGTCATTGTTTTTCTATTCTATTTA
8068995 TATTTATCATTAGTCATTGTTTTTTCTATT-TAGTTTA
1 TATTTATC-TT-GTCATTG-TTTTTCTATTCTA-TTTA
8069032 T
1 T
8069033 CTCATGGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
34 8 0.25
35 2 0.06
36 8 0.25
37 14 0.44
ACGTcount: A:0.19, C:0.07, G:0.08, T:0.65
Consensus pattern (34 bp):
TATTTATCTTGTCATTGTTTTTCTATTCTATTTA
Found at i:8069463 original size:13 final size:13
Alignment explanation
Indices: 8069445--8069474 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8069435 GGTTTCTTTG
*
8069445 AATTTTTTGATTA
1 AATTTTTTGACTA
8069458 AATTTTTTGACTA
1 AATTTTTTGACTA
8069471 AATT
1 AATT
8069475 CAAACTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (13 bp):
AATTTTTTGACTA
Found at i:8070219 original size:56 final size:56
Alignment explanation
Indices: 8070003--8070442 Score: 392
Period size: 56 Copynumber: 7.9 Consensus size: 56
8069993 GTTCTTTTCA
* **
8070003 AATTTCAAAAATGTGAGGAAAATTTTGAAATATCAATTTTTCCTTAAAA-TAAAAAT
1 AATTTCAAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACT-AAAAT
* * * * * *
8070059 CATTTCAAAAAAATTTGAAGAAAAA-ATGGAATATCAAATTTTCCTTAAAACAAAAAT
1 AATTTC--AAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACTAAAAT
* ** * *
8070116 AATTTAAAAAATTAAAGGGAAAAAGTTGAAATATTAAAATTTT-CTTAAAACTAAAAT
1 AATTTCAAAAATTTGA-GGAAAAAGTTGAAATA-TCAATTTTTCCTTAAAACTAAAAT
* * * * *
8070173 AATTTCAAAATTTTGAGGAACAACTTAAAATATCAATTTTTCCTTAAAACAAAAAT
1 AATTTCAAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACTAAAAT
* * * * * * *
8070229 AATTTC-AAATTTTAAAGAAAAAAGTTGAAATAGCAATTTTTTCTTTAAATTAAAAT
1 AATTTCAAAAATTT-GAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACTAAAAT
** * **
8070285 AATTTCAAATTTTTGAAGAAAAAGTTGAAATATCAATTTTTTTTTAAAA-TGAAAAT
1 AATTTCAAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACT-AAAAT
* ** * *
8070341 AATTTTAAAAATTAAAGGAAAAAGTTGAAGTA-C-ATTTTTCCTTAAAACCAAAAT
1 AATTTCAAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACTAAAAT
* * * *
8070395 AATTT-AAAGAATTTGAGAAAAAAATTGAAATATCTATTTTTTCTTAAA
1 AATTTCAAA-AATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAA
8070443 GTAAAAATGA
Statistics
Matches: 310, Mismatches: 60, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
53 3 0.01
54 40 0.13
55 25 0.08
56 152 0.49
57 68 0.22
58 22 0.07
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (56 bp):
AATTTCAAAAATTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAAACTAAAAT
Found at i:8070289 original size:112 final size:111
Alignment explanation
Indices: 8070018--8070442 Score: 435
Period size: 112 Copynumber: 3.8 Consensus size: 111
8070008 CAAAAATGTG
** * * * *
8070018 AGGAAAATTTTGAAATATCAATTTTTCCTTAAAA-TAAAAATCATTTCAAAAAAATTTGAAGAAA
1 AGGAAAAAGTTGAAATA-CAATTTTTTCTTAAAACT-AAAATAATTTC--AAAATTTTGAGGAAA
* *
8070082 AAA-TGGAATATCAAATTTTCCTTAAAACAAAAATAATTTAAAAAATTAA
62 AAATTGAAATATCAATTTTTCCTTAAAACAAAAATAATTTAAAAAATTAA
* ** *
8070131 AGGGAAAAAGTTGAAATATTAAAATTTTCTTAAAACTAAAATAATTTCAAAATTTTGAGGAACAA
1 A-GGAAAAAGTTGAAATA-CAATTTTTTCTTAAAACTAAAATAATTTCAAAATTTTGAGGAAAAA
* * * **
8070196 CTTAAAATATCAATTTTTCCTTAAAACAAAAATAATTTCAAATTTTAA
64 ATTGAAATATCAATTTTTCCTTAAAACAAAAATAATTTAAAAAATTAA
* * * * * *
8070244 AGAAAAAAGTTGAAATAGCAATTTTTTCTTTAAATTAAAATAATTTCAAATTTTTGAAGAAAAAG
1 AGGAAAAAGTTGAAATA-CAATTTTTTCTTAAAACTAAAATAATTTCAAAATTTTGAGGAAAAAA
** ** *
8070309 TTGAAATATCAATTTTTTTTTAAAATGAAAATAATTTTAAAAATTAA
65 TTGAAATATCAATTTTTCCTTAAAACAAAAATAATTTAAAAAATTAA
* * * * *
8070356 AGGAAAAAGTTGAAGTAC-ATTTTTCCTTAAAACCAAAATAATTT-AAAGAATTTGAGAAAAAAA
1 AGGAAAAAGTTGAAATACAATTTTTTCTTAAAACTAAAATAATTTCAAA-ATTTTGAGGAAAAAA
* *
8070419 TTGAAATATCTATTTTTTCTTAAA
65 TTGAAATATCAATTTTTCCTTAAA
8070443 GTAAAAATGA
Statistics
Matches: 259, Mismatches: 49, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
109 3 0.01
110 54 0.21
111 1 0.00
112 121 0.47
113 42 0.16
114 37 0.14
115 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (111 bp):
AGGAAAAAGTTGAAATACAATTTTTTCTTAAAACTAAAATAATTTCAAAATTTTGAGGAAAAAAT
TGAAATATCAATTTTTCCTTAAAACAAAAATAATTTAAAAAATTAA
Found at i:8072696 original size:19 final size:21
Alignment explanation
Indices: 8072672--8072711 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8072662 AATCATTTCA
8072672 AAATAA-T-TTTAACAATGAT
1 AAATAACTATTTAACAATGAT
8072691 AAATAACTATTTAACAATGAT
1 AAATAACTATTTAACAATGAT
8072712 TTTGACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (21 bp):
AAATAACTATTTAACAATGAT
Found at i:8072888 original size:78 final size:79
Alignment explanation
Indices: 8072806--8072968 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
8072796 AAATGAATGC
* **** * *
8072806 TATTTTTAAAATTGTACAAAACT-AAAAGAT-AAAAAGTCTAAAA-GACACAATCAATTATCATA
1 TATTTTTAAAATTGAACAAAA-TGAAAAGATGAAAAACAAGAAAATGA-ACAATAAATTATCAAA
8072868 ATTAATAGATAAATAT
64 ATTAATAGATAAATAT
* * *
8072884 TATTTTTAAAGTTGAAGAAAATGAAAAGGTGAAAAACAAGAAAATGAACAATAAATTATCAAAAT
1 TATTTTTAAAATTGAACAAAATGAAAAGATGAAAAACAAGAAAATGAACAATAAATTATCAAAAT
*
8072949 TAATATATAAATAT
66 TAATAGATAAATAT
8072963 TATTTT
1 TATTTT
8072969 AAACAAAAGT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
77 1 0.01
78 24 0.34
79 44 0.62
80 2 0.03
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (79 bp):
TATTTTTAAAATTGAACAAAATGAAAAGATGAAAAACAAGAAAATGAACAATAAATTATCAAAAT
TAATAGATAAATAT
Found at i:8073361 original size:79 final size:76
Alignment explanation
Indices: 8073180--8073368 Score: 202
Period size: 79 Copynumber: 2.4 Consensus size: 76
8073170 TCTAATTTTA
* *** *
8073180 AATAAATAAATATTATTTTTAATAATGAAAAAAACTAAAAGATAATAAAACCCAAAAACATAATC
1 AATAAATAAATATTATTTTTAA-AATG-AAAAAACTAAAAGATAAAAAAAAAAAAAAACACAATC
8073245 AACGATCACAATT
64 AACGATCACAATT
* *
8073258 AATAGAA-AAATATT-TTCTTAAAAATGAAAAAATTGAAAAGATAAAAAAAGAAAAAAATACACA
1 AATA-AATAAATATTATT-TTTAAAATGAAAAAACT-AAAAGATAAAAAAA-AAAAAAA-ACACA
** * *
8073321 ATCAATTATTATAATT
61 ATCAACGATCACAATT
8073337 AATAAATAAATATTATTTTTAAAATGAAAAAA
1 AATAAATAAATATTATTTTTAAAATGAAAAAA
8073369 GAAAAAGTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
76 7 0.08
77 19 0.21
78 21 0.23
79 43 0.47
80 2 0.02
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.28
Consensus pattern (76 bp):
AATAAATAAATATTATTTTTAAAATGAAAAAACTAAAAGATAAAAAAAAAAAAAAACACAATCAA
CGATCACAATT
Found at i:8075121 original size:2 final size:2
Alignment explanation
Indices: 8075116--8075146 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8075106 GTGTGTCTAC
8075116 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8075147 GCCCAATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8078196 original size:104 final size:102
Alignment explanation
Indices: 8078088--8078275 Score: 232
Period size: 103 Copynumber: 1.8 Consensus size: 102
8078078 AATTATTTTA
* * * * * *
8078088 TAACGACAAAATATTGTTCTATAAACTTTATTTTAGTAACCATACAATTTGGTTATAAAAAACTC
1 TAACGACAAAATATTATTATATAAACTTT-TTTTAGCAACCACAAAATTTGATTATAAAAAACTC
8078153 TTACATAATAATATTAGCTTTATTACATAAAATATTTCG
65 TTACATAATAATATTA-CTTTATTACATAAAATATTTCG
** * * * *
8078192 TAACGATTAAATATTATTATTTTAACTTTTTTTAGCAACCACAAAATTTGATTATAAAAACCTTT
1 TAACGACAAAATATTATTATATAAACTTTTTTTAGCAACCACAAAATTTGATTATAAAAAACTCT
**
8078257 TATGTAATAATATTACTTT
66 TACATAATAATATTACTTT
8078276 TGTTGCCTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
102 4 0.06
103 43 0.61
104 23 0.33
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (102 bp):
TAACGACAAAATATTATTATATAAACTTTTTTTAGCAACCACAAAATTTGATTATAAAAAACTCT
TACATAATAATATTACTTTATTACATAAAATATTTCG
Found at i:8084189 original size:132 final size:130
Alignment explanation
Indices: 8084027--8084460 Score: 396
Period size: 132 Copynumber: 3.3 Consensus size: 130
8084017 ACTCTAAATA
* * * **
8084027 TCGCAACAA-AATTTTTTATTGTTACAAATATAATAGGAATTCATAATGATAAAAATTATTGTTA
1 TCGCAACAATAATTTTTTATCGTTACAAATATGATAGAAATTCATAAAAAT-AAAATTATTGTTA
* * *
8084091 TATAAAATATTTTTAAAAAATCAATTAAGTAA-AGACATTGAAAAATCGTTGCAAATAAAACAGG
65 TATAAAA-ATATTTAAAAAATAAATTAAGTAACA-ACATTGAAAAATCATTGCAAATAAAACAGG
8084155 TTT
128 TTT
* * **** *
8084158 TTGCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTTCATAAAAATTTTTTTGTTGTT
1 TCGCAACAATAATTTTTTATCGTTACAAATATGATAGAAA--TTCATAAAAATAAAATTATTGTT
* *
8084223 ATATAAAAATATTTAAAAAATAAATTAAGTAACAATATTGAAAAATCATTGCAAATAAAATAGGT
64 ATATAAAAATATTTAAAAAATAAATTAAGTAACAACATTGAAAAATCATTGCAAATAAAACAGGT
8084288 TT
129 TT
* * ** * **** *** *
8084290 TCACAACAATAATTTTTTATCATTACAAATATGATAGAAATTTTGTAACAATTTTGTTGCCGTTG
1 TCGCAACAATAATTTTTTATCGTTACAAATATGATAGAAA-TTCATAAAAATAAAATTATTGTTA
* * *
8084355 TAT-AAAATA-TTAACAAAAAAAATTAAGCAATAACATTGAAAAATCATTGCAAATGAAATA-AG
65 TATAAAAATATTTAA-AAAATAAATTAAGTAACAACATTGAAAAATCATTGCAAAT-AAA-ACAG
*
8084417 CTTT
127 GTTT
* * * *
8084421 T-GCAATAAT-AGTTCTTATCGTTACAAATATGATAAAAATT
1 TCGCAACAATAATTTTTTATCGTTACAAATATGATAGAAATT
8084461 TTAGTAACAC
Statistics
Matches: 257, Mismatches: 39, Indels: 17
0.82 0.12 0.05
Matches are distributed among these distances:
128 2 0.01
129 29 0.11
130 48 0.19
131 38 0.15
132 115 0.45
133 16 0.06
134 9 0.04
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.36
Consensus pattern (130 bp):
TCGCAACAATAATTTTTTATCGTTACAAATATGATAGAAATTCATAAAAATAAAATTATTGTTAT
ATAAAAATATTTAAAAAATAAATTAAGTAACAACATTGAAAAATCATTGCAAATAAAACAGGTTT
Found at i:8084468 original size:130 final size:132
Alignment explanation
Indices: 8084087--8084469 Score: 447
Period size: 132 Copynumber: 2.9 Consensus size: 132
8084077 AAAAATTATT
* ** * *
8084087 GTTATATAAAATATTTTTAAAAAATCAATTAAGTAA-AGACATTGAAAAATCGTTGCAAATAAAA
1 GTTATATAAAA-ATATTTAAAAAAAAAATTAAGCAACA-ACATTGAAAAATCATTGCAAATAAAA
* * * * *
8084151 CAGGTTTTTGCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTTCA-TAAAAATTTTT
64 TAAGCTTTTGCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTT-AGTAACAATTTTG
**
8084215 TTGTT
128 TTGCC
* * *
8084220 GTTATATAAAAATATTTAAAAAATAAATTAAGTAACAATATTGAAAAATCATTGCAAATAAAAT-
1 GTTATATAAAAATATTTAAAAAAAAAATTAAGCAACAACATTGAAAAATCATTGCAAATAAAATA
* * * *
8084284 AGGTTTTCACAACAATAATTTTTTATCATTACAAATATGATAGAAATTTT-GTAACAATTTTGTT
66 AGCTTTT-GCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTTAGTAACAATTTTGTT
8084348 GCC
130 GCC
* * *
8084351 GTTGTAT-AAAATA-TTAACAAAAAAAATTAAGCAATAACATTGAAAAATCATTGCAAATGAAAT
1 GTTATATAAAAATATTTAA-AAAAAAAATTAAGCAACAACATTGAAAAATCATTGCAAATAAAAT
* * *
8084414 AAGCTTTTGCAATAAT-AGTTCTTATCGTTACAAATATGATAAAAATTTTAGTAACA
65 AAGCTTTTGCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTTAGTAACA
8084470 CCTATTTTTG
Statistics
Matches: 217, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
129 33 0.15
130 58 0.27
131 29 0.13
132 85 0.39
133 12 0.06
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.36
Consensus pattern (132 bp):
GTTATATAAAAATATTTAAAAAAAAAATTAAGCAACAACATTGAAAAATCATTGCAAATAAAATA
AGCTTTTGCAACAATAATTTTTTATCGTTACAAATATGATAAAAATTTTAGTAACAATTTTGTTG
CC
Found at i:8085435 original size:17 final size:17
Alignment explanation
Indices: 8085415--8085459 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
8085405 GGCAGTCAAA
8085415 TTTTGGGTTTTCTAGGT
1 TTTTGGGTTTTCTAGGT
8085432 TTTTGGGTTTTCTAGGT
1 TTTTGGGTTTTCTAGGT
8085449 TTTTGGGTTTT
1 TTTTGGGTTTT
8085460 GATTGAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.04, C:0.04, G:0.29, T:0.62
Consensus pattern (17 bp):
TTTTGGGTTTTCTAGGT
Found at i:8085442 original size:8 final size:8
Alignment explanation
Indices: 8085415--8085459 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
8085405 GGCAGTCAAA
8085415 TTTTGGGT
1 TTTTGGGT
*
8085423 TTTCTAGGT
1 TTT-TGGGT
8085432 TTTTGGGT
1 TTTTGGGT
*
8085440 TTTCTAGGT
1 TTT-TGGGT
8085449 TTTTGGGT
1 TTTTGGGT
8085457 TTT
1 TTT
8085460 GATTGAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
8 17 0.55
9 14 0.45
ACGTcount: A:0.04, C:0.04, G:0.29, T:0.62
Consensus pattern (8 bp):
TTTTGGGT
Found at i:8090272 original size:10 final size:10
Alignment explanation
Indices: 8090252--8090290 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
8090242 TAAAAAGGGC
8090252 AAAAT-AAAA
1 AAAATGAAAA
8090261 AAAATG--AA
1 AAAATGAAAA
8090269 AAAATGAAAA
1 AAAATGAAAA
8090279 AAAATGAAAA
1 AAAATGAAAA
8090289 AA
1 AA
8090291 GGGAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
9 5 0.19
10 14 0.52
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (10 bp):
AAAATGAAAA
Found at i:8090290 original size:43 final size:43
Alignment explanation
Indices: 8090233--8090331 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
8090223 AATCTATTTT
*
8090233 GAAAAATGATAAAAAGGG-CAAAATAAAAAAAATGAAAAAATGAAA
1 GAAAAATGA-AAAAAGGGAAAAAAT-AAAAAAATGAAAAAA-GAAA
8090278 -AAAAATGAAAAAAGGGAAAAAATAAAAAAATGAAAAAAGAAA
1 GAAAAATGAAAAAAGGGAAAAAATAAAAAAATGAAAAAAGAAA
8090320 GAAAAA-GAAAAA
1 GAAAAATGAAAAA
8090332 GAAATTGATG
Statistics
Matches: 51, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
42 10 0.20
43 28 0.55
44 13 0.25
ACGTcount: A:0.76, C:0.01, G:0.15, T:0.08
Consensus pattern (43 bp):
GAAAAATGAAAAAAGGGAAAAAATAAAAAAATGAAAAAAGAAA
Found at i:8090313 original size:9 final size:9
Alignment explanation
Indices: 8090252--8090315 Score: 71
Period size: 8 Copynumber: 7.3 Consensus size: 9
8090242 TAAAAAGGGC
*
8090252 AAAATAAAA
1 AAAATGAAA
8090261 AAAATG-AA
1 AAAATGAAA
8090269 AAAATGAAAA
1 AAAATG-AAA
8090279 AAAATG-AA
1 AAAATGAAA
* *
8090287 AAAAGGGAA
1 AAAATGAAA
8090296 AAAAT-AAA
1 AAAATGAAA
8090304 AAAATGAAA
1 AAAATGAAA
8090313 AAA
1 AAA
8090316 GAAAGAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
8 22 0.47
9 17 0.36
10 8 0.17
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (9 bp):
AAAATGAAA
Found at i:8090329 original size:17 final size:16
Alignment explanation
Indices: 8090259--8090335 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
8090249 GGCAAAATAA
8090259 AAAAAATGAAAAAATGAA-
1 AAAAAA-GAAAAAA--AAG
**
8090277 AAAAAATGAAAAAAGGG
1 AAAAAA-GAAAAAAAAG
* *
8090294 AAAAAATAAAAAAATG
1 AAAAAAGAAAAAAAAG
8090310 AAAAAAGAAAGAAAAAG
1 AAAAAAGAAA-AAAAAG
8090327 -AAAAAGAAA
1 AAAAAAGAAA
8090336 TTGATGGGGC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
16 25 0.50
17 11 0.22
18 14 0.28
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:8090330 original size:25 final size:24
Alignment explanation
Indices: 8090259--8090335 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 24
8090249 GGCAAAATAA
*
8090259 AAAAAATGAAAAAATGAAAAAAAATG
1 AAAAAAGGAAAAAA--AAAAAAAATG
*
8090285 AAAAAAGGGAAAAAATAAAAAAATG
1 AAAAAA-GGAAAAAAAAAAAAAATG
*
8090310 AAAAAA-GAAAGAAAAAGAAAAA-G
1 AAAAAAGGAAA-AAAAAAAAAAATG
8090333 AAA
1 AAA
8090336 TTGATGGGGC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
23 8 0.18
24 9 0.20
25 15 0.33
26 6 0.13
27 7 0.16
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.06
Consensus pattern (24 bp):
AAAAAAGGAAAAAAAAAAAAAATG
Found at i:8092184 original size:17 final size:17
Alignment explanation
Indices: 8092162--8092196 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8092152 CAAGAATCAT
8092162 ATTCTTGCAAATTTGAA
1 ATTCTTGCAAATTTGAA
**
8092179 ATTCTTGTGAATTTGAA
1 ATTCTTGCAAATTTGAA
8092196 A
1 A
8092197 ACTCTTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (17 bp):
ATTCTTGCAAATTTGAA
Found at i:8092286 original size:17 final size:18
Alignment explanation
Indices: 8092256--8092300 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8092246 AGAACCTTTG
* *
8092256 TGAAACTTGAAACTTTTA
1 TGAATCTTGGAACTTTTA
*
8092274 TGAAT-TTGGAACTTTTG
1 TGAATCTTGGAACTTTTA
8092291 TGAATCTTGG
1 TGAATCTTGG
8092301 GATCTTTACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (18 bp):
TGAATCTTGGAACTTTTA
Found at i:8092359 original size:17 final size:17
Alignment explanation
Indices: 8092314--8092366 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
8092304 CTTTACGAGT
* *
8092314 TTTGAAATCATTGCAAA
1 TTTGAAACCTTTGCAAA
8092331 TTTGAAACCTTTGCGAAA
1 TTTGAAACCTTTGC-AAA
* *
8092349 TTTGAAACTTTTACAAA
1 TTTGAAACCTTTGCAAA
8092366 T
1 T
8092367 CTAGAACCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (17 bp):
TTTGAAACCTTTGCAAA
Found at i:8092546 original size:18 final size:18
Alignment explanation
Indices: 8092493--8092580 Score: 74
Period size: 17 Copynumber: 4.9 Consensus size: 18
8092483 ATATTTGCTA
*
8092493 AAACTTGAATCTTTTTGTG
1 AAACTTGAATC-TTTTGCG
** *
8092512 AATTTTGAA-CCTTTGCG
1 AAACTTGAATCTTTTGCG
8092529 AAACTTGAATCTTTTGCG
1 AAACTTGAATCTTTTGCG
** *
8092547 AATTTTGATTCTTTAT--G
1 AAACTTGAATCTTT-TGCG
8092564 AAACTTGAATCTTTTGC
1 AAACTTGAATCTTTTGC
8092581 AAATTTTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
16 1 0.02
17 24 0.46
18 19 0.37
19 8 0.15
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (18 bp):
AAACTTGAATCTTTTGCG
Found at i:8092551 original size:35 final size:35
Alignment explanation
Indices: 8092442--8092627 Score: 182
Period size: 35 Copynumber: 5.3 Consensus size: 35
8092432 CAAATCTTGA
*
8092442 AATTTTGAACCTTTGTGAAACTTG-ATCTTTTACG
1 AATTTTGAACCTTTGTGAAACTTGAATCTTTTGCG
* *
8092476 AATTTTGATA--TTTGCTAAAACTTGAATCTTTTTGTG
1 AATTTTGA-ACCTTTG-TGAAACTTGAATC-TTTTGCG
*
8092512 AATTTTGAACCTTTGCGAAACTTGAATCTTTTGCG
1 AATTTTGAACCTTTGTGAAACTTGAATCTTTTGCG
** * *
8092547 AATTTTGATTCTTTATGAAACTTGAATCTTTTGCA
1 AATTTTGAACCTTTGTGAAACTTGAATCTTTTGCG
* * * * *
8092582 AATTTTTTAATCTTAGTGAAGCTTGAATC-TTTGCA
1 AA-TTTTGAACCTTTGTGAAACTTGAATCTTTTGCG
8092617 AATTTTAGAAC
1 AATTTT-GAAC
8092628 TGTTACAAAT
Statistics
Matches: 126, Mismatches: 18, Indels: 15
0.79 0.11 0.09
Matches are distributed among these distances:
33 4 0.03
34 20 0.16
35 53 0.42
36 45 0.36
37 4 0.03
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (35 bp):
AATTTTGAACCTTTGTGAAACTTGAATCTTTTGCG
Found at i:8092569 original size:71 final size:70
Alignment explanation
Indices: 8092442--8092578 Score: 204
Period size: 71 Copynumber: 1.9 Consensus size: 70
8092432 CAAATCTTGA
* *
8092442 AATTTTGAACCTTTGTGAAACTTGATCTTTTACGAATTTTGATATTTGCTAAAACTTGAATCTTT
1 AATTTTGAACCTTTGCGAAACTTGATCTTTTACGAATTTTGATATTTGATAAAACTTGAATCTTT
8092507 TTGTG
66 TTGTG
* * *
8092512 AATTTTGAACCTTTGCGAAACTTGAATCTTTTGCGAATTTTGAT-TCTTTATGAAACTTGAATCT
1 AATTTTGAACCTTTGCGAAACTTG-ATCTTTTACGAATTTTGATAT-TTGATAAAACTTGAATCT
8092576 TTT
64 TTT
8092579 GCAAATTTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
70 24 0.40
71 36 0.60
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (70 bp):
AATTTTGAACCTTTGCGAAACTTGATCTTTTACGAATTTTGATATTTGATAAAACTTGAATCTTT
TTGTG
Found at i:8092607 original size:71 final size:71
Alignment explanation
Indices: 8092441--8092622 Score: 201
Period size: 71 Copynumber: 2.6 Consensus size: 71
8092431 GCAAATCTTG
* * *
8092441 AAATTTTGAACCTTTGTGAAACTTG-ATCTTTTACGAATTTTGATATTTGCTAAAACTTGAATCT
1 AAATTTTGAACCTTAGTGAAACTTGAATCTTTTGCGAATTTTGATATTTGATAAAACTTGAATCT
*
8092505 TTTTGT
66 TTTTGC
* * * * *
8092511 GAATTTTGAACCTTTGCGAAACTTGAATCTTTTGCGAATTTTGAT-TCTTTATGAAACTTGAATC
1 AAATTTTGAACCTTAGTGAAACTTGAATCTTTTGCGAATTTTGATAT-TTGATAAAACTTGAATC
8092575 -TTTTGC
65 TTTTTGC
* * * *
8092581 AAATTTTTTAATCTTAGTGAAGCTTGAATC-TTTGCAAATTTT
1 AAA-TTTTGAACCTTAGTGAAACTTGAATCTTTTGCGAATTTT
8092623 AGAACTGTTA
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
70 42 0.44
71 53 0.56
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (71 bp):
AAATTTTGAACCTTAGTGAAACTTGAATCTTTTGCGAATTTTGATATTTGATAAAACTTGAATCT
TTTTGC
Found at i:8092638 original size:18 final size:19
Alignment explanation
Indices: 8092606--8092659 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
8092596 AGTGAAGCTT
*
8092606 GAATCT-TTGCAAATTTTA
1 GAATCTGTTACAAATTTTA
*
8092624 GAA-CTGTTACAAATTTTT
1 GAATCTGTTACAAATTTTA
* *
8092642 TAATTTGTTACAAATTTT
1 GAATCTGTTACAAATTTT
8092660 GGAGTGTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 2 0.07
18 15 0.50
19 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (19 bp):
GAATCTGTTACAAATTTTA
Found at i:8092982 original size:6 final size:6
Alignment explanation
Indices: 8092971--8093037 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
8092961 GCCCAAAATT
* * * * * *
8092971 TTTTAA TTTTAA TTTTAA -TTTGA TTTTGA TTTCAG TTTTGA TTTTGA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
8093018 TTTTAA -TTTAA -TTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTT
8093038 GTTTTTTGTC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
5 14 0.27
6 37 0.73
ACGTcount: A:0.25, C:0.01, G:0.07, T:0.66
Consensus pattern (6 bp):
TTTTAA
Found at i:8093222 original size:16 final size:15
Alignment explanation
Indices: 8093197--8093240 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
8093187 CAAAACCAAA
*
8093197 TCACAAAAAATTAAT
1 TCACAAAAAATCAAT
8093212 TCACAAAAAAATCAAT
1 TCAC-AAAAAATCAAT
8093228 TCA-AATAAAATCA
1 TCACAA-AAAATCA
8093241 TAAAAATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (15 bp):
TCACAAAAAATCAAT
Found at i:8093237 original size:15 final size:16
Alignment explanation
Indices: 8093197--8093240 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
8093187 CAAAACCAAA
*
8093197 TCAC-AAAAAATTAAT
1 TCACAAAAAAATCAAT
8093212 TCACAAAAAAATCAAT
1 TCACAAAAAAATCAAT
*
8093228 TCA-AATAAAATCA
1 TCACAAAAAAATCA
8093241 TAAAAATTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (16 bp):
TCACAAAAAAATCAAT
Found at i:8094136 original size:7 final size:7
Alignment explanation
Indices: 8094126--8094186 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
8094116 TTTCTAGCTC
8094126 TTTTTAT
1 TTTTTAT
*
8094133 TTTTTGT
1 TTTTTAT
8094140 TTTTTA-
1 TTTTTAT
*
8094146 TTTTGAT
1 TTTTTAT
8094153 TTTTT-T
1 TTTTTAT
* *
8094159 CTTTGAT
1 TTTTTAT
8094166 TTTGGTTAT
1 TTT--TTAT
8094175 TTTTTAT
1 TTTTTAT
8094182 TTTTT
1 TTTTT
8094187 TCCTTTTTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
6 9 0.21
7 27 0.64
9 6 0.14
ACGTcount: A:0.10, C:0.02, G:0.08, T:0.80
Consensus pattern (7 bp):
TTTTTAT
Found at i:8094155 original size:13 final size:12
Alignment explanation
Indices: 8094127--8094168 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
8094117 TTCTAGCTCT
8094127 TTTTATTTTTTG-
1 TTTT-TTTTTTGA
8094139 TTTTTTATTTTGA
1 TTTTTT-TTTTGA
8094152 TTTTTTTCTTTGA
1 TTTTTTT-TTTGA
8094165 TTTT
1 TTTT
8094169 GGTTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.07
12 10 0.37
13 15 0.56
ACGTcount: A:0.10, C:0.02, G:0.07, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:8094662 original size:46 final size:46
Alignment explanation
Indices: 8094595--8094686 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
8094585 CATTTTCATG
** *
8094595 AATACTCATAAGGTGAAAAAATTATTTTGAATTACTACCAAACTAT
1 AATACTCATAAGGTGAAAAAATTATCCTAAATTACTACCAAACTAT
*
8094641 AATACTCATAAGGTGAGAAAATTATCCTAAATTACTACCAAACTAT
1 AATACTCATAAGGTGAAAAAATTATCCTAAATTACTACCAAACTAT
8094687 TGAAGTACTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (46 bp):
AATACTCATAAGGTGAAAAAATTATCCTAAATTACTACCAAACTAT
Found at i:8114077 original size:2 final size:2
Alignment explanation
Indices: 8114070--8114109 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8114060 TATGAACTCC
8114070 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
8114110 TTGTATCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:8120059 original size:17 final size:17
Alignment explanation
Indices: 8120032--8120066 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8120022 TAATAGTTAG
8120032 AATTGTCAAATTTCTTGA
1 AATTGTCAAATTT-TTGA
8120050 AATT-TCAAATTTTTGA
1 AATTGTCAAATTTTTGA
8120066 A
1 A
8120067 GGCCCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 8 0.47
18 4 0.24
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (17 bp):
AATTGTCAAATTTTTGA
Found at i:8125205 original size:16 final size:16
Alignment explanation
Indices: 8125184--8125237 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
8125174 TTTAAAAACT
*
8125184 TATCAATTAAAGAATA
1 TATCAATTAAATAATA
*
8125200 TATCAATT--ATACT-
1 TATCAATTAAATAATA
8125213 TATCAATTAAATAATA
1 TATCAATTAAATAATA
8125229 TATCAATTA
1 TATCAATTA
8125238 TAAAATGACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
13 8 0.25
14 3 0.09
15 4 0.12
16 17 0.53
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (16 bp):
TATCAATTAAATAATA
Found at i:8125223 original size:29 final size:29
Alignment explanation
Indices: 8125181--8125239 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
8125171 TTTTTTAAAA
8125181 ACTTATCAATTAAAGAATATATCAATTAT
1 ACTTATCAATTAAAGAATATATCAATTAT
*
8125210 ACTTATCAATTAAATAATATATCAATTAT
1 ACTTATCAATTAAAGAATATATCAATTAT
8125239 A
1 A
8125240 AAATGACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (29 bp):
ACTTATCAATTAAAGAATATATCAATTAT
Found at i:8125478 original size:44 final size:46
Alignment explanation
Indices: 8125430--8125526 Score: 114
Period size: 44 Copynumber: 2.2 Consensus size: 46
8125420 ATCCGCAATA
*
8125430 ATCCACAATAAAGATT-ACCATCCACA-AACATAATAGGCATTACT
1 ATCCACAATAAACATTGACCATCCACAGAACATAATAGGCATTACT
***
8125474 AT-C-C-ATAAACATTGTTGATCCACATGAACATAATAGGCATTACT
1 ATCCACAATAAACATTGACCATCCACA-GAACATAATAGGCATTACT
8125518 ATCCACAAT
1 ATCCACAAT
8125527 GATCCATAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
41 8 0.19
42 8 0.19
43 1 0.02
44 22 0.51
45 1 0.02
46 1 0.02
47 2 0.05
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (46 bp):
ATCCACAATAAACATTGACCATCCACAGAACATAATAGGCATTACT
Found at i:8146883 original size:2 final size:2
Alignment explanation
Indices: 8146876--8146907 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8146866 GTTTATATGT
*
8146876 TA TA TA TA TA TA TA TA TA GA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8146908 AGAAATGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8150240 original size:32 final size:32
Alignment explanation
Indices: 8150204--8150271 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
8150194 AGGATTAAAA
* * *
8150204 AATAAAAAGAAAAAATACATCAATTTTAATTT
1 AATAAAAAGAAAAAATACATAAATATTAATTG
*
8150236 AATAAAAAGAAAATATACATAAATATTAATTG
1 AATAAAAAGAAAAAATACATAAATATTAATTG
8150268 AATA
1 AATA
8150272 GTTGTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (32 bp):
AATAAAAAGAAAAAATACATAAATATTAATTG
Found at i:8150485 original size:19 final size:19
Alignment explanation
Indices: 8150461--8150497 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8150451 GGTGGGTACC
8150461 ATATTTTATAACCATAATA
1 ATATTTTATAACCATAATA
*
8150480 ATATTTTATGACCATAAT
1 ATATTTTATAACCATAAT
8150498 TATTCTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (19 bp):
ATATTTTATAACCATAATA
Found at i:8150720 original size:142 final size:143
Alignment explanation
Indices: 8150553--8150820 Score: 416
Period size: 142 Copynumber: 1.9 Consensus size: 143
8150543 CGGTTGATTG
* *
8150553 AAATATTTTATTTTATTAATTTAATTATGGAAAATTAATTTGATATATTTGTTTTTTATATTTAC
1 AAATATTTTATTTCATTAATTTAATTATAGAAAATTAATTTGATATATTTGTTTTTTATATTTAC
* * * *
8150618 ACAA-GAAATATATTAATTACTT-AAATAGATATTATATTTAATCAATTAT-AAATGTATCAATC
66 A-AATAAAATACATTAATT-CTTCAAATAGATACTATATTTAATCAAATATAAAATGTATCAATC
8150680 AAACATAAATTAATA
129 AAACATAAATTAATA
*
8150695 AAATATTTTATTTCATTAATTTAATTATAGAGAATTAATTTGATATATTTGTTTTTTATATTTAC
1 AAATATTTTATTTCATTAATTTAATTATAGAAAATTAATTTGATATATTTGTTTTTTATATTTAC
* *
8150760 AAATAAAATACATTAATTTTTCAAATGGATACTATATTTAATCAAATATAAAATGTATCAA
66 AAATAAAATACATTAATTCTTCAAATAGATACTATATTTAATCAAATATAAAATGTATCAA
8150821 ATAATTGATT
Statistics
Matches: 114, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
141 4 0.04
142 99 0.87
143 11 0.10
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (143 bp):
AAATATTTTATTTCATTAATTTAATTATAGAAAATTAATTTGATATATTTGTTTTTTATATTTAC
AAATAAAATACATTAATTCTTCAAATAGATACTATATTTAATCAAATATAAAATGTATCAATCAA
ACATAAATTAATA
Found at i:8151461 original size:12 final size:12
Alignment explanation
Indices: 8151438--8151472 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
8151428 TTTATTTAAT
8151438 TTTATA-AT-TA
1 TTTATATATATA
8151448 TTTATATATATA
1 TTTATATATATA
8151460 TTTATATATATA
1 TTTATATATATA
8151472 T
1 T
8151473 ATTTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.26
11 2 0.09
12 15 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATATATATA
Found at i:8151467 original size:14 final size:14
Alignment explanation
Indices: 8151450--8151492 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
8151440 TATAATTATT
8151450 TATATATATATTTA
1 TATATATATATTTA
8151464 TATATATATATTTA
1 TATATATATATTTA
*
8151478 -AT-TTTATATTTA
1 TATATATATATTTA
8151490 TAT
1 TAT
8151493 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 9 0.33
13 4 0.15
14 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATATATATTTA
Found at i:8151485 original size:12 final size:12
Alignment explanation
Indices: 8151421--8151489 Score: 50
Period size: 14 Copynumber: 5.3 Consensus size: 12
8151411 AAATAATTTT
8151421 TTTAATTTT-TA
1 TTTAATTTTATA
8151432 TTTAATTTTATAA
1 TTTAATTTTAT-A
* *
8151445 TTATTTATATATATA
1 -T-TTAAT-TTTATA
*
8151460 TTTATATATATATA
1 TTTA-AT-TTTATA
8151474 TTTAATTTTATA
1 TTTAATTTTATA
8151486 TTTA
1 TTTA
8151490 TATTAAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
11 9 0.19
12 10 0.21
13 5 0.10
14 15 0.31
15 5 0.10
16 4 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTAATTTTATA
Found at i:8154089 original size:66 final size:67
Alignment explanation
Indices: 8154017--8154162 Score: 192
Period size: 66 Copynumber: 2.2 Consensus size: 67
8154007 AAATTTATTC
* * *
8154017 TTGAGAATAAAATTCATAAAATCC-TA-TCAAATTATTGAAAAT-TTTTTATGAGTT-TTAAAAT
1 TTGAGAATAAAATTCATAAAA-CCTTACT-AAACTA-TCAAAATATTTTTATGAGTTGTAAAAAT
*
8154078 GATTT
63 GATAT
8154083 TTGAGAATAAAATTCATAAAACCTTACTAAACTATCAAAATATTTTTATGAGTTGTAAAAATGAT
1 TTGAGAATAAAATTCATAAAACCTTACTAAACTATCAAAATATTTTTATGAGTTGTAAAAATGAT
8154148 AT
66 AT
*
8154150 TTGAAAATAAAAT
1 TTGAGAATAAAAT
8154163 CTTACCAAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
65 8 0.11
66 40 0.56
67 23 0.32
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (67 bp):
TTGAGAATAAAATTCATAAAACCTTACTAAACTATCAAAATATTTTTATGAGTTGTAAAAATGAT
AT
Found at i:8156348 original size:21 final size:21
Alignment explanation
Indices: 8156319--8156366 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
8156309 ATCACACTCA
* * *
8156319 AAATGCTTTAATTGAAATTCG
1 AAATTCTTTAACTGAAATTCC
8156340 AAATTCTTTAACTGAAATTCC
1 AAATTCTTTAACTGAAATTCC
8156361 AAATTC
1 AAATTC
8156367 AATCTCTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (21 bp):
AAATTCTTTAACTGAAATTCC
Found at i:8159317 original size:14 final size:14
Alignment explanation
Indices: 8159291--8159359 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
8159281 TCTTCTACTT
8159291 AAAAATAATAATAC
1 AAAAATAATAATAC
8159305 AAAAA-AATAAATA-
1 AAAAATAAT-AATAC
* *
8159318 AATAATAAATAGTA-
1 AAAAAT-AATAATAC
* *
8159332 AATAATAAGAATAC
1 AAAAATAATAATAC
8159346 AAAAATTAATAATA
1 AAAAA-TAATAATA
8159360 AAGTTTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
13 12 0.27
14 22 0.50
15 10 0.23
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (14 bp):
AAAAATAATAATAC
Found at i:8159891 original size:13 final size:13
Alignment explanation
Indices: 8159875--8159899 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8159865 AAATAAAATA
8159875 AAAATTAAAAAAG
1 AAAATTAAAAAAG
8159888 AAAATTAAAAAA
1 AAAATTAAAAAA
8159900 AAGAAAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATTAAAAAAG
Found at i:8167012 original size:29 final size:29
Alignment explanation
Indices: 8166951--8167014 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
8166941 TCAACTTAAA
*
8166951 TCAAA-CCCAACCAAATGCACGTTTAGGG
1 TCAAATCCCAACCAAATGCACATTTAGGG
* * * *
8166979 CCAAATCCCAGCCAAATGCACATTTTGGT
1 TCAAATCCCAACCAAATGCACATTTAGGG
8167008 TCAAATC
1 TCAAATC
8167015 AGGAAAGTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (29 bp):
TCAAATCCCAACCAAATGCACATTTAGGG
Found at i:8172297 original size:21 final size:21
Alignment explanation
Indices: 8172256--8172298 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8172246 TTTGATAATT
*
8172256 TAAAAAAAAAAAAAGATAAGA
1 TAAAAAAAAAAAAAGAAAAGA
8172277 TAAAAAAAAAAGAAA-AAAAGA
1 TAAAAAAAAAA-AAAGAAAAGA
8172298 T
1 T
8172299 TATCTTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (21 bp):
TAAAAAAAAAAAAAGAAAAGA
Found at i:8172730 original size:47 final size:48
Alignment explanation
Indices: 8172671--8172814 Score: 143
Period size: 47 Copynumber: 3.0 Consensus size: 48
8172661 GTTATTGAGT
* *
8172671 CTCTGATGAGAAAAGCCTTTTATTATTTGATTTTTAAAA-TTTCAAGC
1 CTCTAATGAGAAAAGCCTTTCATTATTTGATTTTTAAAAGTTTCAAGC
* * * *
8172718 CTCTAATGAGAAAAGCC-TTCAATGTTTAATTTTTTAAAAGTTTTTAAGC
1 CTCTAATGAGAAAAGCCTTTCATTATTTGA-TTTTTAAAAG-TTTCAAGC
** *
8172767 CTCTAATGA-AAAGAGTATTTCATTATTTGATTTTT-GAAGTTATCAAGC
1 CTCTAATGAGAAA-AGCCTTTCATTATTTGATTTTTAAAAGTT-TCAAGC
8172815 TTATAACGAG
Statistics
Matches: 78, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
46 8 0.10
47 27 0.35
48 11 0.14
49 23 0.29
50 9 0.12
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (48 bp):
CTCTAATGAGAAAAGCCTTTCATTATTTGATTTTTAAAAGTTTCAAGC
Found at i:8172912 original size:39 final size:38
Alignment explanation
Indices: 8172832--8172920 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 38
8172822 GAGAGGAACC
* * * *
8172832 CAAAA-AAAAAAAAAAAAAAGCCAAAAAACCAAAAAAC
1 CAAAATAAAAACAACAAAAAGCCAAAAAAACAAAAAAA
*
8172869 CAAAATGAAAACAACAAAAA-CCAAAACAAACAAATAAAA
1 CAAAATAAAAACAACAAAAAGCCAAAA-AAACAAA-AAAA
8172908 CAAAATAAAAACA
1 CAAAATAAAAACA
8172921 TTTTTTCACT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
37 11 0.26
38 17 0.40
39 15 0.35
ACGTcount: A:0.78, C:0.17, G:0.02, T:0.03
Consensus pattern (38 bp):
CAAAATAAAAACAACAAAAAGCCAAAAAAACAAAAAAA
Found at i:8172917 original size:29 final size:29
Alignment explanation
Indices: 8172854--8172917 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
8172844 AAAAAAAGCC
*
8172854 AAAAAACCAAAAAACCAAAATGAAAACAA
1 AAAAAACCAAAAAAACAAAATGAAAACAA
*
8172883 CAAAAACCAAAACAAAC-AAAT-AAAACAA
1 AAAAAACCAAAA-AAACAAAATGAAAACAA
8172911 AATAAAA
1 AA-AAAA
8172918 ACATTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 8 0.27
29 19 0.63
30 3 0.10
ACGTcount: A:0.77, C:0.17, G:0.02, T:0.05
Consensus pattern (29 bp):
AAAAAACCAAAAAAACAAAATGAAAACAA
Found at i:8174266 original size:7 final size:7
Alignment explanation
Indices: 8174254--8174300 Score: 55
Period size: 6 Copynumber: 7.0 Consensus size: 7
8174244 GTTCAGATTT
8174254 TTTTTTA
1 TTTTTTA
8174261 TTTTTTTA
1 -TTTTTTA
8174269 TTTTTTA
1 TTTTTTA
8174276 -TTTTT-
1 TTTTTTA
*
8174281 GTTTTTA
1 TTTTTTA
8174288 -TTTTTA
1 TTTTTTA
8174294 TTTTTTA
1 TTTTTTA
8174301 CTATTGTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 16 0.44
7 13 0.36
8 7 0.19
ACGTcount: A:0.13, C:0.00, G:0.02, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:8174273 original size:18 final size:18
Alignment explanation
Indices: 8174250--8174299 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
8174240 TCTGGTTCAG
8174250 ATTTTTTTTTATT-TTTTT
1 ATTTTTTTTT-TTGTTTTT
8174268 ATTTTTTATTTTTGTTTTT
1 ATTTTTT-TTTTTGTTTTT
8174287 ATTTTTATTTTTT
1 ATTTTT-TTTTTT
8174300 ACTATTGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.31
19 19 0.66
20 1 0.03
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (18 bp):
ATTTTTTTTTTTGTTTTT
Found at i:8174291 original size:25 final size:25
Alignment explanation
Indices: 8174250--8174300 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
8174240 TCTGGTTCAG
*
8174250 ATTTTTTTTTATTTTTTTATTTTTT
1 ATTTTTTTTTATATTTTTATTTTTT
8174275 ATTTTTGTTTT-TATTTTTATTTTTT
1 ATTTTT-TTTTATATTTTTATTTTTT
8174300 A
1 A
8174301 CTATTGTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (25 bp):
ATTTTTTTTTATATTTTTATTTTTT
Found at i:8175226 original size:6 final size:5
Alignment explanation
Indices: 8175204--8175262 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 5
8175194 ATTAATCATT
8175204 AAATA AAATA AAATA ACAATA ACAATAA AAATTA AAATTA AAA-A AAA-A
1 AAATA AAATA AAATA A-AATA A-AAT-A AAA-TA AAA-TA AAATA AAATA
*
8175252 AGATA AAATA A
1 AAATA AAATA A
8175263 CAAAAGTGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
4 7 0.15
5 17 0.35
6 21 0.44
7 3 0.06
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:8175267 original size:19 final size:18
Alignment explanation
Indices: 8175208--8175267 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
8175198 ATCATTAAAT
*
8175208 AAAATAAAATAACAATAAC
1 AAAAAAAAATAA-AATAAC
* *
8175227 AATAAAAATTAAAATTAA-
1 AAAAAAAAATAAAA-TAAC
8175245 AAAAAAAAGATAAAATAAC
1 AAAAAAAA-ATAAAATAAC
8175264 AAAA
1 AAAA
8175268 GTGAAGATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 12 0.36
19 21 0.64
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.17
Consensus pattern (18 bp):
AAAAAAAAATAAAATAAC
Found at i:8179207 original size:360 final size:360
Alignment explanation
Indices: 8178483--8179227 Score: 978
Period size: 360 Copynumber: 2.1 Consensus size: 360
8178473 TTTTTTACTC
* *
8178483 TATTATCTTATATAAATATATAAAAGCCAAAAACTTTGACAAAATAAGAAATTGTCCAACATGAA
1 TATTATCTTATATAATTATATAAAAGCCAAAAACTTTGACAAAATAAGAAATTATCCAACATGAA
** ** *
8178548 TAGCCTATATAATTGACAAATAGATGATTTTAAAAAATTGTCATGTATTTTCTAATAAATTAATT
66 TAGCCTATATAATTGACAAATAGACAATTTTAAAAAATTGTCATGTACCTTCCAATAAATTAATT
* * * *
8178613 ACATTTATATTTTATTATTTATCTTAAATCACTCTTAATTAAATTAATATTAAAAGTAATAAAAT
131 ACATTTATATTTTATTATTTACCTTAAATCACTATCAATTAAATTAATATTAAAAGTAATAAAAC
* *
8178678 TTTAATCGCCATCAATTTTGTCACCTCATTTTCCAATTGTAAATATTCAACTCTTAAATTACATT
196 TTTAATCGCCATCAATTTTGTCACATCATTTTCCAATTGTAAATATTCAACTCTTAAATTACAAT
* * *** * *
8178743 TGTGTTAAAAAAAATTCAGTTGTTAATTTTCTAACTTATAACCTATTTATTTACTCCATCATTTA
261 TGTGATAAAAAAAATTCAATTACCAATTTTCTAACCTATAACCTATTTATTTACTCCACCATTTA
* * *
8178808 AGCTATGTTATATATATACGTTTAATATGTATATA
326 AGCTATGTTATATAGATACATTTAATACGTATATA
* ** *
8178843 TATTATCTTATATAATTATATAAAAGCCGAAGTCTTTGACAAAA-AATGAAATTATCCAATA-GA
1 TATTATCTTATATAATTATATAAAAGCCAAAAACTTTGACAAAATAA-GAAATTATCCAACATGA
** ** *
8178906 GATAGTTTATATAATTGACATGTGGACAATTTTAAAAAATTGTCATGTACCTTCCAATAAATTAA
65 -ATAGCCTATATAATTGACAAATAGACAATTTTAAAAAATTGTCATGTACCTTCCAATAAATTAA
* *
8178971 TTATATTTATATTTTATTATTTACCTTAAATCACTATCAATTAAATTCATATT-AAAGATAATAA
129 TTACATTTATATTTTATTATTTACCTTAAATCACTATCAATTAAATTAATATTAAAAG-TAATAA
* * ** *
8179035 AACTTTAATTGCCATCAGTTTTGTCACATTTTTTTCCAATTGTAAATATTCAACTCTTAAATTAT
193 AACTTTAATCGCCATCAATTTTGTCACATCATTTTCCAATTGTAAATATTCAACTCTTAAATTAC
* * * * * *
8179100 AATTGT-ATAAAAACAATTCAATTACCAATTTTTTAACCTATGACTTGTTTATTTACTCTACCAT
258 AATTGTGATAAAAAAAATTCAATTACCAATTTTCTAACCTATAACCTATTTATTTACTCCACCAT
* *
8179164 TTAAGTTATGTTATCTAGATACATTTAATACGTATATTA
323 TTAAGCTATGTTATATAGATACATTTAATACGTATA-TA
8179203 TATTATATCTTATAT-ATTATATAAA
1 TA-T-TATCTTATATAATTATATAAA
8179228 TATATAAAAG
Statistics
Matches: 332, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
359 84 0.25
360 227 0.68
361 11 0.03
362 10 0.03
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (360 bp):
TATTATCTTATATAATTATATAAAAGCCAAAAACTTTGACAAAATAAGAAATTATCCAACATGAA
TAGCCTATATAATTGACAAATAGACAATTTTAAAAAATTGTCATGTACCTTCCAATAAATTAATT
ACATTTATATTTTATTATTTACCTTAAATCACTATCAATTAAATTAATATTAAAAGTAATAAAAC
TTTAATCGCCATCAATTTTGTCACATCATTTTCCAATTGTAAATATTCAACTCTTAAATTACAAT
TGTGATAAAAAAAATTCAATTACCAATTTTCTAACCTATAACCTATTTATTTACTCCACCATTTA
AGCTATGTTATATAGATACATTTAATACGTATATA
Found at i:8180423 original size:23 final size:24
Alignment explanation
Indices: 8180387--8180432 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
8180377 ATTGCAAATG
*
8180387 GTTTTATTTTTAAACTTTATTATC
1 GTTTTATTCTTAAACTTTATTATC
* *
8180411 GTTTT-TTCTTAAATTTTTTTAT
1 GTTTTATTCTTAAACTTTATTAT
8180433 GAATAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (24 bp):
GTTTTATTCTTAAACTTTATTATC
Done.