Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 69 of 120
Found at i:8181362 original size:21 final size:23
Alignment explanation
Indices: 8181327--8181368 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8181317 TCAATGAAAA
*
8181327 TTTTAATATTTTTATA-TATAGT
1 TTTTAATATTATTATACTATAGT
8181349 TTTTAA-ATTATTATACTATA
1 TTTTAATATTATTATACTATA
8181369 TCTTATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTTAATATTATTATACTATAGT
Found at i:8181855 original size:15 final size:15
Alignment explanation
Indices: 8181832--8181863 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8181822 TGATTTAAGG
*
8181832 TAAATAATAAAGTTT
1 TAAAAAATAAAGTTT
8181847 TAAAAAATAAAGTTT
1 TAAAAAATAAAGTTT
8181862 TA
1 TA
8181864 TTACCTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
TAAAAAATAAAGTTT
Found at i:8182006 original size:144 final size:145
Alignment explanation
Indices: 8181824--8182104 Score: 467
Period size: 144 Copynumber: 1.9 Consensus size: 145
8181814 ATTAAGAATG
8181824 ATTTAAGGTAAATAATAAAGTTTTAAAAAATAAAGTTTTATTACCTTTAATATGAATTTAATTGA
1 ATTTAAGGTAAATAAT-AAGTTTTAAAAAATAAAGTTTTATTACCTTTAATATGAATTTAATTGA
* * *
8181889 GAGTTATTTAAGATAAATAATAAAACATAAATGTAATTAATTTATTAGACGATACATGAC-AATT
65 GAGTGATTTAAGATAAATAATAAAACATAAATGTAATTAATCTATTAGAAGATACATGACAAATT
8181953 TTTAAATACAACAATC
130 TTTAAATACAACAATC
* **
8181969 ATTTAAGGTAAATAAT-AGTGTTTAAAACATAAAGTTTTATTATGTTTAATATGAATTTAATTGA
1 ATTTAAGGTAAATAATAAGT-TTTAAAAAATAAAGTTTTATTACCTTTAATATGAATTTAATTGA
*
8182033 GAGTGATTTAAGATAAATAATAAAATATAAATGTAATTAATCTATTAGAAGATACATGACAAATT
65 GAGTGATTTAAGATAAATAATAAAACATAAATGTAATTAATCTATTAGAAGATACATGACAAATT
8182098 TTTAAAT
130 TTTAAAT
8182105 TTGCCCACAT
Statistics
Matches: 127, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
143 3 0.02
144 97 0.76
145 27 0.21
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (145 bp):
ATTTAAGGTAAATAATAAGTTTTAAAAAATAAAGTTTTATTACCTTTAATATGAATTTAATTGAG
AGTGATTTAAGATAAATAATAAAACATAAATGTAATTAATCTATTAGAAGATACATGACAAATTT
TTAAATACAACAATC
Found at i:8182179 original size:2 final size:2
Alignment explanation
Indices: 8182174--8182203 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8182164 AATTTTGGTT
8182174 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8182204 AGATATGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8185953 original size:7 final size:7
Alignment explanation
Indices: 8185941--8185965 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8185931 GTCATATTCT
8185941 TTTATTA
1 TTTATTA
8185948 TTTATTA
1 TTTATTA
8185955 TTTATTA
1 TTTATTA
8185962 TTTA
1 TTTA
8185966 CAATTTGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTATTA
Found at i:8187122 original size:21 final size:20
Alignment explanation
Indices: 8187048--8187125 Score: 63
Period size: 21 Copynumber: 3.7 Consensus size: 20
8187038 GCAAAGATAA
8187048 CATGCAATAAATATAATAAAAAAT
1 CATGCAA-AAATATAAT---AAAT
*
8187072 CAAGCAAAAATATTAATAAAT
1 CATGCAAAAATA-TAATAAAT
8187093 CATGC--AAATA-AATTAAAT
1 CATGCAAAAATATAA-TAAAT
8187111 CCATGCAAAAATATA
1 -CATGCAAAAATATA
8187126 TTTATGCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
17 2 0.04
18 5 0.11
19 10 0.22
21 13 0.28
22 1 0.02
23 5 0.11
24 10 0.22
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.24
Consensus pattern (20 bp):
CATGCAAAAATATAATAAAT
Found at i:8187156 original size:24 final size:25
Alignment explanation
Indices: 8187129--8187203 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 25
8187119 AAATATATTT
*
8187129 ATGCAAAT-ATATCATCAT-AAAATC
1 ATGCAAATAAAAT-ATCATAAAAATC
*
8187153 ATGCAATTAAAATATCATAAAAATC
1 ATGCAAATAAAATATCATAAAAATC
*
8187178 ATTCAAA-ACAAATAT-ATAAAAA-C
1 ATGCAAATA-AAATATCATAAAAATC
8187201 ATG
1 ATG
8187204 AAACCAAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
23 3 0.07
24 20 0.47
25 20 0.47
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.27
Consensus pattern (25 bp):
ATGCAAATAAAATATCATAAAAATC
Found at i:8187194 original size:27 final size:28
Alignment explanation
Indices: 8187132--8187194 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
8187122 TATATTTATG
*
8187132 CAAATATATCATCATAAAATCATGCAAT
1 CAAATATATCATCATAAAATCATGCAAA
* *
8187160 TAAA-ATATCAT-A-AAAATCATTCAAAA
1 CAAATATATCATCATAAAATCATGC-AAA
8187186 CAAATATAT
1 CAAATATAT
8187195 AAAAACATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
25 9 0.31
26 6 0.21
27 11 0.38
28 3 0.10
ACGTcount: A:0.56, C:0.14, G:0.02, T:0.29
Consensus pattern (28 bp):
CAAATATATCATCATAAAATCATGCAAA
Found at i:8187294 original size:12 final size:12
Alignment explanation
Indices: 8187279--8187361 Score: 59
Period size: 12 Copynumber: 6.9 Consensus size: 12
8187269 ACTATAATTA
8187279 AAAAAATAAAAT
1 AAAAAATAAAAT
*
8187291 -AAAAATAAACT
1 AAAAAATAAAAT
*
8187302 AAAACAAGAAAAT
1 AAAA-AATAAAAT
8187315 ---AAATAAAAT
1 AAAAAATAAAAT
*
8187324 AAAAAATAAAAGCA
1 AAAAAATAAAA--T
8187338 AAAAAATGAAAA-
1 AAAAAAT-AAAAT
8187350 AAAAAATGAAAA
1 AAAAAAT-AAAA
8187362 CATACGATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
9 7 0.12
10 1 0.02
11 10 0.17
12 23 0.40
13 6 0.10
14 7 0.12
15 4 0.07
ACGTcount: A:0.80, C:0.04, G:0.05, T:0.12
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:8187353 original size:26 final size:28
Alignment explanation
Indices: 8187310--8187361 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
8187300 CTAAAACAAG
8187310 AAAATAAATAAAATAAAAAAT-AAAAGC
1 AAAATAAATAAAATAAAAAATGAAAAGC
8187337 AAAA-AAATGAAAA-AAAAAATGAAAA
1 AAAATAAAT-AAAATAAAAAATGAAAA
8187362 CATACGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.12
Consensus pattern (28 bp):
AAAATAAATAAAATAAAAAATGAAAAGC
Found at i:8197697 original size:159 final size:156
Alignment explanation
Indices: 8197381--8197709 Score: 516
Period size: 159 Copynumber: 2.0 Consensus size: 156
8197371 CTTCCTAGGT
8197381 TTTTACCCTTCTTTAGGATGTCTTGGAAGAATACTGATTTGTTAGGTCTGATTGTGAAAATGGAA
1 TTTTACCCTTCTTTAGGATGTCTTGGAAGAATACTGATTTGTTAGGTCTGATTGTGAAAATGGAA
8197446 GTTTCTGCGTTATATGGCAGATAGTTATATTATGGTCGCCATAGCATGTTATGGGATCAAAATGG
66 GTTTCTGCGTTATATGGCAGATAGTTATATTATGGTCGCCATAGCATGTTATGGGATCAAAATGG
*
8197511 GCAGTTCAATTATGCCCGGTTTCTTTCTA
131 GCAGTTCAATTATGCCCAG--T-TTTCTA
* *
8197540 TTTTACGCTTCTTTAGGATGTCTTGGAAGAATTCTG-TTTCGTTAGGTCTGATTGTGAAAATGGA
1 TTTTACCCTTCTTTAGGATGTCTTGGAAGAATACTGATTT-GTTAGGTCTGATTGTGAAAATGGA
*
8197604 AGTTTCTGCGTTATATGGTAGATAGTTATATTATGGTTGCCTGCCATAGCATGTTATGGGATCAA
65 AGTTTCTGCGTTATATGGCAGATAGTTATATTATGG-T--C-GCCATAGCATGTTATGGGATCAA
8197669 AATGGGCAGTTCAATTATGCCCAGTTTCTTTCTA
126 AATGGGCAGTTCAATTATGCCCAG--T-TTTCTA
8197703 TTTTACC
1 TTTTACC
8197710 TACCCAAAAT
Statistics
Matches: 160, Mismatches: 5, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
158 3 0.02
159 93 0.58
160 1 0.01
162 1 0.01
163 62 0.39
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (156 bp):
TTTTACCCTTCTTTAGGATGTCTTGGAAGAATACTGATTTGTTAGGTCTGATTGTGAAAATGGAA
GTTTCTGCGTTATATGGCAGATAGTTATATTATGGTCGCCATAGCATGTTATGGGATCAAAATGG
GCAGTTCAATTATGCCCAGTTTTCTA
Found at i:8198443 original size:72 final size:70
Alignment explanation
Indices: 8198285--8198463 Score: 182
Period size: 72 Copynumber: 2.5 Consensus size: 70
8198275 AAGAATTTTG
* ** * *
8198285 AAAAATAAAATTTTTCATATTTTCGACAAAGATTGTGTTTTTATCTTTAAAACAGTCTGTATTGA
1 AAAAAT-AATTTTTTCATATTTTTAACAAAGATTGCGTTTTTATCTTTAAAACAGTCTCTATTGA
*
8198350 ATTCTG
65 ATTCTA
*
8198356 AAAAATAATTTTTTTTCATATTTTTAACAAAGATTGCGTTTCTTAT-TTTAGAAA-TGTCGTCTA
1 AAAAATAA--TTTTTTCATATTTTTAACAAAGATTGCGTTT-TTATCTTTA-AAACAGTC-TCTA
8198419 TGCTGAATTCTA
61 T--TGAATTCTA
* *
8198431 AAAAATAATTTTTTTTATATTTTTTACAAAGAT
1 AAAAATAA-TTTTTTCATATTTTTAACAAAGAT
8198464 CACTTTTTTT
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
70 2 0.02
71 6 0.07
72 34 0.37
73 11 0.12
74 23 0.25
75 16 0.17
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.46
Consensus pattern (70 bp):
AAAAATAATTTTTTCATATTTTTAACAAAGATTGCGTTTTTATCTTTAAAACAGTCTCTATTGAA
TTCTA
Found at i:8202525 original size:185 final size:185
Alignment explanation
Indices: 8202208--8202583 Score: 657
Period size: 185 Copynumber: 2.0 Consensus size: 185
8202198 GGGGGTGAAT
8202208 AGATGAAAATTCTTTTTTTATATTTTGGGGGGGGGGGGGGGGGTGGGGGAGTAATTTTTTCTGTA
1 AGATGAAAATTCTTTTTTTATATTTT---GGGGGGGGGGGGGGTGGGGGAGTAATTTTTTCTGTA
*
8202273 CTTTCTCTTCCCCAATTCTTTGGTGGACAAATTATCGTATGGTAGGTTTTGAAAGGAAATGAGGA
63 CTTTCTCTTCCCCAATTCTTTGGTGGACAAATAATCGTATGGTAGGTTTTGAAAGGAAATGAGGA
8202338 AACATACAGTTATATTACAAATTATGACAGCAGGATTTGGTGATGCTTTCTTTTTTTTAA
128 AACATACAGTTATATTACAAATTATGACAGCAGGATTTGGTGATGC-TTC-TTTTTTTAA
* *
8202398 AGATGAATATTCTTTTTTTATATTTT-GGGGTGGGGGGGG-GGGGGAGTAATTTTTTCTGTACTT
1 AGATGAAAATTCTTTTTTTATATTTTGGGGGGGGGGGGGGTGGGGGAGTAATTTTTTCTGTACTT
8202461 TCTCTTCCCCAATTCTTTGGTGGACAAATAATCGTATGGTAGGTTTTGAAAGGAAATGAGGAAAC
66 TCTCTTCCCCAATTCTTTGGTGGACAAATAATCGTATGGTAGGTTTTGAAAGGAAATGAGGAAAC
*
8202526 ATACAGTTATATTACAAGTTATGACAGCAGGATTTGGTGATGCTTCTTTTTTTAA
131 ATACAGTTATATTACAAATTATGACAGCAGGATTTGGTGATGCTTCTTTTTTTAA
8202581 AGA
1 AGA
8202584 ACAAAATAAA
Statistics
Matches: 182, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
183 12 0.07
184 3 0.02
185 130 0.71
186 12 0.07
190 25 0.14
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (185 bp):
AGATGAAAATTCTTTTTTTATATTTTGGGGGGGGGGGGGGTGGGGGAGTAATTTTTTCTGTACTT
TCTCTTCCCCAATTCTTTGGTGGACAAATAATCGTATGGTAGGTTTTGAAAGGAAATGAGGAAAC
ATACAGTTATATTACAAATTATGACAGCAGGATTTGGTGATGCTTCTTTTTTTAA
Found at i:8203059 original size:25 final size:25
Alignment explanation
Indices: 8203031--8203079 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8203021 ACATGTAGAA
8203031 ATCTAATTCTCCTACATTAGTGCAG
1 ATCTAATTCTCCTACATTAGTGCAG
*
8203056 ATCTGATTCTCCTACATTAGTGCA
1 ATCTAATTCTCCTACATTAGTGCA
8203080 ATTTGATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (25 bp):
ATCTAATTCTCCTACATTAGTGCAG
Found at i:8211788 original size:16 final size:17
Alignment explanation
Indices: 8211769--8211823 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
8211759 AGTTAATAGG
8211769 ATTCG-ATTCGAATAAA
1 ATTCGAATTCGAATAAA
8211785 ATTCGAATTCG------
1 ATTCGAATTCGAATAAA
8211796 ATTCG-ATTCGAATAAA
1 ATTCGAATTCGAATAAA
8211812 ATTCGAATTCGA
1 ATTCGAATTCGA
8211824 TTCGATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 15
0.67 0.00 0.33
Matches are distributed among these distances:
10 5 0.16
11 5 0.16
16 10 0.32
17 11 0.35
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (17 bp):
ATTCGAATTCGAATAAA
Found at i:8211806 original size:27 final size:27
Alignment explanation
Indices: 8211768--8211830 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
8211758 AAGTTAATAG
8211768 GATTCGATTCGAATAAAATTCGAATTC
1 GATTCGATTCGAATAAAATTCGAATTC
8211795 GATTCGATTCGAATAAAATTCGAATTC
1 GATTCGATTCGAATAAAATTCGAATTC
8211822 GATTCGATT
1 GATTCGATT
8211831 ATTATCGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (27 bp):
GATTCGATTCGAATAAAATTCGAATTC
Found at i:8211953 original size:17 final size:18
Alignment explanation
Indices: 8211931--8211964 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8211921 CTTAATCAAA
8211931 TTTTTA-TATTTAAATTT
1 TTTTTATTATTTAAATTT
*
8211948 TTTTTATTATTTTAATT
1 TTTTTATTATTTAAATT
8211965 AATAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTATTATTTAAATTT
Found at i:8216708 original size:7 final size:7
Alignment explanation
Indices: 8216696--8216724 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
8216686 AGGTATCGAC
8216696 GTAGCTA
1 GTAGCTA
8216703 GTAGCTA
1 GTAGCTA
8216710 GTAGCTA
1 GTAGCTA
8216717 GTAGCTA
1 GTAGCTA
8216724 G
1 G
8216725 AGCCTAGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (7 bp):
GTAGCTA
Found at i:8217582 original size:6 final size:6
Alignment explanation
Indices: 8217573--8217601 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8217563 CTACCACAAC
8217573 CACCAA CACCAA CACCAA CACCAA CACCA
1 CACCAA CACCAA CACCAA CACCAA CACCA
8217602 CCAAAGCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (6 bp):
CACCAA
Found at i:8219288 original size:3 final size:3
Alignment explanation
Indices: 8219280--8219308 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8219270 CTAGTTTAAC
8219280 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8219309 GCTTGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8221293 original size:68 final size:73
Alignment explanation
Indices: 8221206--8221337 Score: 186
Period size: 68 Copynumber: 1.9 Consensus size: 73
8221196 AAAATATTTT
*
8221206 TTTATAAAATTTTTAATAAATCTT-AATTAAAT-A-TTTTTTATTA-TTAAC-TTTTTATTATTC
1 TTTATAAAATTTTTAATAAATCTTCAATTAAATAATTTTTTTATTACTAAACTTTTTTATTATTC
8221266 AGTTCTCA
66 AGTTCTCA
* *
8221274 TTTATTAAAA-TTTTAATAAATTTTCATTTAAATAATTTTTTTATTACTAAACTTTTTTATTATT
1 TTTA-TAAAATTTTTAATAAATCTTCAATTAAATAATTTTTTTATTACTAAACTTTTTTATTATT
8221338 AACTCTTTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
68 17 0.31
69 12 0.22
70 1 0.02
71 10 0.18
72 4 0.07
73 11 0.20
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.58
Consensus pattern (73 bp):
TTTATAAAATTTTTAATAAATCTTCAATTAAATAATTTTTTTATTACTAAACTTTTTTATTATTC
AGTTCTCA
Found at i:8222836 original size:18 final size:17
Alignment explanation
Indices: 8222835--8223035 Score: 118
Period size: 18 Copynumber: 11.6 Consensus size: 17
8222825 ATATTAGTAA
8222835 ATAAATAATATTATATT
1 ATAAATAATATTATATT
*
8222852 AATAAATGATATTATATT
1 -ATAAATAATATTATATT
*
8222870 ACT--AT-ATATTA-ATAA
1 A-TAAATAATATTATAT-T
* *
8222885 ATAATATTATAATATATT
1 ATAA-ATAATATTATATT
8222903 CATAAATAATATTATATT
1 -ATAAATAATATTATATT
8222921 GATAAATAATATTATTATAT
1 -ATAAATAATATTA-TAT-T
* * *
8222941 ATTAATAAATACTATAAT
1 ATAAAT-AATATTATATT
*
8222959 ATTAATAA-A-TATTATT
1 ATAAATAATATTA-TATT
8222975 ATAAATAA-A-TATA-T
1 ATAAATAATATTATATT
8222989 ACT-AAT-ATATTAATATT
1 A-TAAATAATATT-ATATT
8223006 AATAAATAATATTATATT
1 -ATAAATAATATTATATT
*
8223024 AATGAATAATAT
1 -ATAAATAATAT
8223036 AATAAATATT
Statistics
Matches: 150, Mismatches: 13, Indels: 40
0.74 0.06 0.20
Matches are distributed among these distances:
13 1 0.01
14 9 0.06
15 13 0.09
16 19 0.13
17 7 0.05
18 73 0.49
19 21 0.14
20 7 0.05
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (17 bp):
ATAAATAATATTATATT
Found at i:8222919 original size:28 final size:27
Alignment explanation
Indices: 8222846--8222935 Score: 73
Period size: 28 Copynumber: 3.3 Consensus size: 27
8222836 TAAATAATAT
*
8222846 TATATTAATAAATGATATTATATTACT-A
1 TATATT-ATAAATAATATTATATTA-TAA
8222874 TATATTAATAAATAATATTATA--AT-A
1 TATATT-ATAAATAATATTATATTATAA
*
8222899 TAT-TCATAAATAATATTATATTGATAAA
1 TATATTATAAATAATATTATATT-AT-AA
8222927 TAATATTAT
1 T-ATATTAT
8222936 TATATATTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
23 15 0.29
24 1 0.02
25 5 0.10
26 3 0.06
28 23 0.44
29 2 0.04
30 3 0.06
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
TATATTATAAATAATATTATATTATAA
Found at i:8222919 original size:41 final size:41
Alignment explanation
Indices: 8222874--8223177 Score: 242
Period size: 41 Copynumber: 7.0 Consensus size: 41
8222864 TATATTACTA
*
8222874 TATATTAATAAATAATATTATAATATATTCATAAATAATAT
1 TATATTAATAAATAATATTATAATATATTAATAAATAATAT
* * *
8222915 TATATTGATAAATAATATTATTATATATTAATAAATACTAT
1 TATATTAATAAATAATATTATAATATATTAATAAATAATAT
* * *
8222956 AATATTAATAAATATTATTATAA-ATAAATATATACTAAT-ATAT
1 TATATTAATAAATAATATTATAATAT-ATTA-ATA--AATAATAT
* *
8222999 TAATATTAATAAATAATATTATATTAATGAATAATATAATAAATAT
1 T-ATATTAATAAATAATATTATAAT-AT-ATTAATA-AAT-AATAT
* *
8223045 TATTAATTTAATTAATAAACATTATAATAATATATGAATAAATAATA-
1 TA-T-A-TTAATAAAT-AATATTATAAT-ATAT-T-AATAAATAATAT
* *
8223092 TATTATTAATAAATAATATACCATTAATATAATATATTAACA-AATA-
1 TA-TATTAATAAATAATAT--TA-TAATAT-AT-TAATAA-ATAATAT
8223138 T-TATTAATAAATAATATTATAATATATTAATAAATAATAT
1 TATATTAATAAATAATATTATAATATATTAATAAATAATAT
8223178 AAAGAATAAT
Statistics
Matches: 217, Mismatches: 24, Indels: 45
0.76 0.08 0.16
Matches are distributed among these distances:
38 1 0.00
39 9 0.04
40 4 0.02
41 65 0.30
42 4 0.02
43 3 0.01
44 47 0.22
45 12 0.06
46 25 0.12
47 14 0.06
48 13 0.06
49 16 0.07
50 4 0.02
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (41 bp):
TATATTAATAAATAATATTATAATATATTAATAAATAATAT
Found at i:8222942 original size:28 final size:28
Alignment explanation
Indices: 8222911--8223179 Score: 107
Period size: 28 Copynumber: 9.7 Consensus size: 28
8222901 TTCATAAATA
*
8222911 ATATTATATTGATAAATAATATTATTAT
1 ATATTATATTAATAAATAATATTATTAT
* * * *
8222939 ATATTA-ATAAATACTATAATATTAATAA
1 ATATTATATTAATA-AATAATATTATTAT
* *
8222967 ATATTATTATAAATAAAT-ATA-TACTAAT
1 ATATTA-TATTAATAAATAATATTA-TTAT
8222995 ATATTAATATTAATAAATAATATTA-TAT
1 ATATT-ATATTAATAAATAATATTATTAT
*
8223023 -TA--ATGAATAATATAATAAATATTATTA-
1 ATATTAT-ATTAATA-AAT-AATATTATTAT
* * * *
8223050 AT-TTA-ATTAATAAACATTATAATAAT
1 ATATTATATTAATAAATAATATTATTAT
* * * * *
8223076 ATATGA-ATAAATAATATATTATTAATAA
1 ATATTATATTAATAA-ATAATATTATTAT
* ** *
8223104 ATAATATACCATTAATATAATA-TATTA-
1 ATATTATATTAATAA-ATAATATTATTAT
* * *
8223131 ACAAATATTATTAATAAATAATATTATAAT
1 A-TATTA-TATTAATAAATAATATTATTAT
*
8223161 ATATTA-ATAAATAATATAA
1 ATATTATATTAATAA-ATAA
8223180 AGAATAATAA
Statistics
Matches: 179, Mismatches: 39, Indels: 46
0.68 0.15 0.17
Matches are distributed among these distances:
24 2 0.01
25 13 0.07
26 7 0.04
27 39 0.22
28 77 0.43
29 31 0.17
30 10 0.06
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (28 bp):
ATATTATATTAATAAATAATATTATTAT
Found at i:8222944 original size:10 final size:10
Alignment explanation
Indices: 8222928--8223192 Score: 70
Period size: 10 Copynumber: 27.4 Consensus size: 10
8222918 ATTGATAAAT
*
8222928 AATATTATTA
1 AATATTAATA
*
8222938 TATATTAATA
1 AATATTAATA
*
8222948 AATACT-AT-
1 AATATTAATA
8222956 AATATTAATA
1 AATATTAATA
8222966 AATATT-AT-
1 AATATTAATA
*
8222974 --TATAAATA
1 AATATTAATA
*
8222982 AATATATACT-
1 AATAT-TAATA
*
8222992 AATA-T-ATT
1 AATATTAATA
8223000 AATATTAATA
1 AATATTAATA
*
8223010 AATAAT-AT-
1 AATATTAATA
* *
8223018 TATATTAATG
1 AATATTAATA
8223028 AATAATATAATA
1 AAT-AT-TAATA
*
8223040 AATATTATTA
1 AATATTAATA
*
8223050 ATTTAATTAATA
1 A-AT-ATTAATA
*
8223062 AACATTATAATA
1 AATA-T-TAATA
*
8223074 ATATATGAATA
1 A-ATATTAATA
*
8223085 AATAAT-AT-
1 AATATTAATA
*
8223093 ATTATTAATA
1 AATATTAATA
*
8223103 AATAATATACCATT
1 AAT-AT-TA--ATA
8223117 AATA-TAAT-
1 AATATTAATA
*
8223125 -ATATTAACA
1 AATATTAATA
*
8223134 AATATT-ATT
1 AATATTAATA
8223143 AATA--AAT-
1 AATATTAATA
8223150 AATATT-ATA
1 AATATTAATA
8223159 ATATATTAATA
1 A-ATATTAATA
*
8223170 AATAAT-ATA
1 AATATTAATA
* *
8223179 AAGAATAATA
1 AATATTAATA
8223189 AATA
1 AATA
8223193 GTTTTATTTT
Statistics
Matches: 186, Mismatches: 34, Indels: 70
0.64 0.12 0.24
Matches are distributed among these distances:
6 3 0.02
7 10 0.05
8 25 0.13
9 31 0.17
10 65 0.35
11 21 0.11
12 23 0.12
13 3 0.02
14 5 0.03
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (10 bp):
AATATTAATA
Found at i:8222958 original size:69 final size:71
Alignment explanation
Indices: 8222835--8223049 Score: 203
Period size: 69 Copynumber: 3.0 Consensus size: 71
8222825 ATATTAGTAA
* *
8222835 ATAAATAATATTATATTAATAAATGATATTATATTACTATATATTAATAAATAATATT-AT-AAT
1 ATAAATAATATTATATTAATAAATAATATTATATTACTATATATAAATAAATAATATTAATAAAT
8222898 A-TATT
66 ATTATT
* *
8222903 CATAAATAATATTATATTGATAAATAATA-T-TATTA-TATATTAATAAATACTATAATATTAAT
1 -ATAAATAATATTATATTAATAAATAATATTATATTACTATA-T-ATAAATA-AATAATATTAAT
8222965 AAATATTATT
62 AAATATTATT
* * * * * *
8222975 ATAAATAA-ATATATACTAATATATTAATATTAATAAATAATATTATATTAATGAATAATA-TAA
1 ATAAATAATAT-TATATTAATA-AATAATATT-AT-ATTACTA-TATATAAATAAATAATATTAA
8223038 TAAATATTATT
61 TAAATATTATT
8223049 A
1 A
8223050 ATTTAATTAA
Statistics
Matches: 121, Mismatches: 11, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
66 4 0.03
67 6 0.05
68 7 0.06
69 34 0.28
70 4 0.03
71 20 0.17
72 10 0.08
73 1 0.01
74 15 0.12
75 7 0.06
76 8 0.07
77 3 0.02
78 2 0.02
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (71 bp):
ATAAATAATATTATATTAATAAATAATATTATATTACTATATATAAATAAATAATATTAATAAAT
ATTATT
Found at i:8222978 original size:12 final size:13
Alignment explanation
Indices: 8222848--8223173 Score: 118
Period size: 13 Copynumber: 23.9 Consensus size: 13
8222838 AATAATATTA
8222848 TATTAATAAATGA-
1 TATTAATAAAT-AT
* *
8222861 TATTATATTACTAT
1 TATTA-ATAAATAT
*
8222875 ATATTAATAAATAA
1 -TATTAATAAATAT
8222889 TATT-ATAATATAT
1 TATTAATAA-ATAT
*
8222902 TCATAAAT-AATATT
1 T-ATTAATAAATA-T
* *
8222916 ATATTGATAAATAA
1 -TATTAATAAATAT
* *
8222930 TATTATTATATAT
1 TATTAATAAATAT
* * *
8222943 TAATAAATACTATAA
1 T-ATTAATA-AATAT
8222958 TATTAATAAATAT
1 TATTAATAAATAT
8222971 TATTATAAATAAATAT
1 TA-T-T-AATAAATAT
* * *
8222987 ATACTAATATATTAA
1 -TATTAATA-AATAT
*
8223002 TATTAATAAATAA
1 TATTAATAAATAT
*
8223015 TATTATATTAATGAAT
1 TATTA-ATAAAT--AT
*
8223031 AATATAATAAATAT
1 TAT-TAATAAATAT
8223045 TATTAAT---T-T
1 TATTAATAAATAT
* *
8223054 AATTAATAAACAT
1 TATTAATAAATAT
8223067 TA-TAATAATATAT
1 TATTAATAA-ATAT
* *
8223080 GAATAAATAATATAT
1 -TATTAATAA-ATAT
8223095 TATTAATAAATAAT
1 TATTAATAAAT-AT
8223109 ATACCATTAATATAATA-
1 -T---ATTAATA-AATAT
*
8223126 TATTAACAAATAT
1 TATTAATAAATAT
*
8223139 TATTAATAAATAA
1 TATTAATAAATAT
8223152 TATT-AT-AATA-
1 TATTAATAAATAT
8223162 TATTAATAAATA
1 TATTAATAAATA
8223174 ATATAAAGAA
Statistics
Matches: 236, Mismatches: 41, Indels: 73
0.67 0.12 0.21
Matches are distributed among these distances:
9 7 0.03
10 5 0.02
11 6 0.03
12 20 0.08
13 73 0.31
14 59 0.25
15 33 0.14
16 18 0.08
17 4 0.02
18 8 0.03
19 3 0.01
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (13 bp):
TATTAATAAATAT
Found at i:8222991 original size:38 final size:38
Alignment explanation
Indices: 8222869--8223003 Score: 121
Period size: 38 Copynumber: 3.4 Consensus size: 38
8222859 GATATTATAT
* *
8222869 TACT-ATATATTAATAAATAATATTATAATATATTCATAAA
1 TACTAATATATTAATAAATATTATTATAA-ATA--AATAAA
* * * * *
8222909 TAATATTATATTGATAAATAATATTATTATATATTAATAAA
1 TACTAATATATT-A-ATA-AATATTATTATAAATAAATAAA
*
8222950 TACT-ATAATATTAATAAATATTATTATAAATAAATATA
1 TACTAAT-ATATTAATAAATATTATTATAAATAAATAAA
8222988 TACTAATATATTAATA
1 TACTAATATATTAATA
8223004 TTAATAAATA
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
38 32 0.42
39 4 0.05
40 5 0.07
41 19 0.25
42 1 0.01
43 4 0.05
44 11 0.14
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (38 bp):
TACTAATATATTAATAAATATTATTATAAATAAATAAA
Found at i:8223010 original size:44 final size:43
Alignment explanation
Indices: 8222817--8223178 Score: 197
Period size: 44 Copynumber: 8.3 Consensus size: 43
8222807 TTACTTGTAA
* *
8222817 ATAATATTATATTAGTA--AATAAATAATATTATATTAATAAATGAT
1 ATAATAATATATTAATATTAATAAATAATA-T-TA-TAATAAAT-AT
* *
8222862 ATTAT-AT-TACTATATATTAATAAATAATATTATAAT--ATAT
1 ATAATAATATATTA-ATATTAATAAATAATATTATAATAAATAT
* * *
8222902 -TCATAAATAATATT-ATATTGATAAATAATATTAT--TATATAT
1 ATAAT-AAT-ATATTAATATTAATAAATAATATTATAATAAATAT
*
8222943 -TAATAA-ATACTATAATATTAATAAATATTATTATAAATAAATAT
1 ATAATAATATA-T-TAATATTAATAAATAATATTAT-AATAAATAT
* *
8222987 ATACTAATATATTAATATTAATAAATAATATTATATTAATGAATAAT
1 ATAATAATATATTAATATTAATAAATAATA-T-TA-TAATAAAT-AT
* *
8223034 ATAATAAATATTATTAAT-TTAATTAATAAACATTATAAT-AATAT
1 ATAAT-AATA-TATTAATATTAATAAAT-AATATTATAATAAATAT
* *
8223078 ATGAATAA-ATAATATATTATTAATAAATAATATACCATTAATATAATAT
1 AT-AATAATAT-AT-TAATATTAATAAATAATAT--TA-TAATA-AATAT
* *
8223127 ATTAACAA-ATA-T--TATTAATAAATAATATTATAATATAT-T
1 A-TAATAATATATTAATATTAATAAATAATATTATAATAAATAT
8223166 AATAAATAATATA
1 -AT-AATAATATA
8223179 AAGAATAATA
Statistics
Matches: 255, Mismatches: 25, Indels: 78
0.71 0.07 0.22
Matches are distributed among these distances:
38 3 0.01
39 7 0.03
40 12 0.05
41 56 0.22
42 2 0.01
43 14 0.05
44 57 0.22
45 26 0.10
46 28 0.11
47 13 0.05
48 14 0.05
49 22 0.09
50 1 0.00
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (43 bp):
ATAATAATATATTAATATTAATAAATAATATTATAATAAATAT
Found at i:8223051 original size:18 final size:18
Alignment explanation
Indices: 8222876--8223125 Score: 107
Period size: 18 Copynumber: 13.7 Consensus size: 18
8222866 TATTACTATA
8222876 TATTAATA-AAT-AATAT
1 TATTAATATAATAAATAT
*
8222892 TA-TAATATATTCATAAATAA
1 TATTAATATA---ATAAATAT
8222912 TATTATATTGATAA-ATAATAT
1 TATTA-A-T-ATAATA-AATAT
*
8222933 TATTATATATTAATAAATAC
1 TATTA-ATA-TAATAAATAT
8222953 TA-TAATATTAATAAATAT
1 TATTAATA-TAATAAATAT
8222971 TATT-ATA-AATAAATAT
1 TATTAATATAATAAATAT
* *
8222987 ATACTAATAT-ATTAATAT
1 -TATTAATATAATAAATAT
* *
8223005 TAATAA-ATAATATTATAT
1 TATTAATATAATA-AATAT
8223023 TAATGAATAATATAATAAATAT
1 T-AT---TAATATAATAAATAT
* *
8223045 TATTAATTTAATTAATA-
1 TATTAATATAATAAATAT
** *
8223062 -AACATTATAAT-AATA-
1 TATTAATATAATAAATAT
*
8223077 TATGAATA-AATAATATAT
1 TATTAATATAATAA-ATAT
*
8223095 TATTAATA-AATAATATAC
1 TATTAATATAATAA-ATAT
*
8223113 CATTAATATAATA
1 TATTAATATAATA
8223126 TATTAACAAA
Statistics
Matches: 183, Mismatches: 23, Indels: 53
0.71 0.09 0.20
Matches are distributed among these distances:
15 12 0.07
16 26 0.14
17 13 0.07
18 68 0.37
19 11 0.06
20 17 0.09
21 17 0.09
22 9 0.05
23 7 0.04
24 3 0.02
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (18 bp):
TATTAATATAATAAATAT
Found at i:8223192 original size:23 final size:23
Alignment explanation
Indices: 8223134--8223192 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
8223124 TATATTAACA
* * *
8223134 AATATTATTAATAAATAATATTAT
1 AATA-TATAAATAAATAATATAAG
*
8223158 AATATATTAATAAATAATATAAAG
1 AATATATAAATAAATAATAT-AAG
8223182 AATA-ATAAATA
1 AATATATAAATA
8223193 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 22 0.71
24 9 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
AATATATAAATAAATAATATAAG
Found at i:8223289 original size:16 final size:16
Alignment explanation
Indices: 8223213--8223289 Score: 56
Period size: 16 Copynumber: 4.9 Consensus size: 16
8223203 TTATATTAAT
8223213 ATAATATATTAATATTTA
1 ATAATA-ATTAAT-TTTA
**
8223231 ATAAT-ATT-ATTAAA
1 ATAATAATTAATTTTA
8223245 AT-ATAATT-ATGTTTGA
1 ATAATAATTAAT-TTT-A
*
8223261 ATATTAA-TAATTTTA
1 ATAATAATTAATTTTA
8223276 ATAATAATTAATTT
1 ATAATAATTAATTT
8223290 CTATATTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
13 2 0.04
14 9 0.19
15 10 0.21
16 16 0.34
17 5 0.11
18 5 0.11
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
ATAATAATTAATTTTA
Found at i:8223297 original size:24 final size:24
Alignment explanation
Indices: 8223265--8223326 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
8223255 GTTTGAATAT
8223265 TAATAATTTTAATAATAATTAATTTC
1 TAAT-ATTTTAATAATAA-TAATTTC
*
8223291 T-ATATTTTAATAATAATAATTTT
1 TAATATTTTAATAATAATAATTTC
*
8223314 TAATATTCTAATA
1 TAATATTTTAATA
8223327 GTTATATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 7 0.21
24 23 0.70
25 2 0.06
26 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (24 bp):
TAATATTTTAATAATAATAATTTC
Found at i:8223651 original size:23 final size:23
Alignment explanation
Indices: 8223621--8223681 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
8223611 AGTATATAAT
8223621 ATATATTAAAAAATATTATGATA
1 ATATATTAAAAAATATTATGATA
* *
8223644 ATATATTAATAAATATTATTATA
1 ATATATTAAAAAATATTATGATA
8223667 ATAT-TATAAAAAATA
1 ATATAT-TAAAAAATA
8223682 GATTTTTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 1 0.03
23 33 0.97
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
ATATATTAAAAAATATTATGATA
Found at i:8223907 original size:13 final size:13
Alignment explanation
Indices: 8223889--8223929 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 13
8223879 GCATACTTGT
8223889 TTTTTTCTTTCAA
1 TTTTTTCTTTCAA
8223902 TTTTTTGCCTTTCAA
1 TTTTTT--CTTTCAA
*
8223917 TTTTTTGTTTCAA
1 TTTTTTCTTTCAA
8223930 ATTAGTTTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 12 0.48
15 13 0.52
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.66
Consensus pattern (13 bp):
TTTTTTCTTTCAA
Found at i:8223913 original size:15 final size:15
Alignment explanation
Indices: 8223895--8223923 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8223885 TTGTTTTTTT
8223895 CTTTCAATTTTTTGC
1 CTTTCAATTTTTTGC
8223910 CTTTCAATTTTTTG
1 CTTTCAATTTTTTG
8223924 TTTCAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.17, G:0.07, T:0.62
Consensus pattern (15 bp):
CTTTCAATTTTTTGC
Found at i:8225715 original size:29 final size:30
Alignment explanation
Indices: 8225647--8225721 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
8225637 TTTGGTTTGA
8225647 AATAAGAGCTTATTT-GAATACAAACTAAAG
1 AATAAGAGCTTATTTAGAATACAAAC-AAAG
* *
8225677 AATAAAAGCTTATTTAG-GTACAATA-AAAG
1 AATAAGAGCTTATTTAGAATACAA-ACAAAG
*
8225706 TATAAGAGCTTATTTA
1 AATAAGAGCTTATTTA
8225722 AAAAAAGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 18 0.46
30 19 0.49
31 2 0.05
ACGTcount: A:0.48, C:0.08, G:0.13, T:0.31
Consensus pattern (30 bp):
AATAAGAGCTTATTTAGAATACAAACAAAG
Found at i:8225732 original size:29 final size:28
Alignment explanation
Indices: 8225647--8225733 Score: 68
Period size: 29 Copynumber: 3.0 Consensus size: 28
8225637 TTTGGTTTGA
*
8225647 AATAAGAGCTTATTTGAATACAAACT-AAAG
1 AATAAGAGCTTATTT-AA-A-AAAATAAAAG
* ** *
8225677 AATAAAAGCTTATTTAGGTACAATAAAAG
1 AATAAGAGCTTATTTA-AAAAAATAAAAG
*
8225706 TATAAGAGCTTATTTAAAAAAAGTAAAA
1 AATAAGAGCTTATTTAAAAAAA-TAAAA
8225734 TAGTTCAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
28 6 0.14
29 24 0.55
30 14 0.32
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.28
Consensus pattern (28 bp):
AATAAGAGCTTATTTAAAAAAATAAAAG
Found at i:8227244 original size:23 final size:23
Alignment explanation
Indices: 8227212--8227263 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
8227202 TTCTTGTGGG
*
8227212 CACACATCATGATCTTTTTCTTA
1 CACACATCATGATCATTTTCTTA
* *
8227235 CACACGTCATGATCATTTTCTTT
1 CACACATCATGATCATTTTCTTA
8227258 CACACA
1 CACACA
8227264 AATCAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.38
Consensus pattern (23 bp):
CACACATCATGATCATTTTCTTA
Found at i:8229006 original size:12 final size:12
Alignment explanation
Indices: 8228987--8229016 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8228977 TTAGTTCCAC
8228987 ACAAGTATAAGT
1 ACAAGTATAAGT
*
8228999 ATAAGTATAAGT
1 ACAAGTATAAGT
8229011 ACAAGT
1 ACAAGT
8229017 CAAGTGAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.27
Consensus pattern (12 bp):
ACAAGTATAAGT
Found at i:8230018 original size:32 final size:32
Alignment explanation
Indices: 8229982--8230043 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
8229972 ATCTACTTAA
* *
8229982 TTTCTCAAATTATTGATTATGTTATCATACAG
1 TTTCTCAAACTATTAATTATGTTATCATACAG
8230014 TTTCTCAAACTATTAATTATGTTATCATAC
1 TTTCTCAAACTATTAATTATGTTATCATAC
8230044 TTACTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.47
Consensus pattern (32 bp):
TTTCTCAAACTATTAATTATGTTATCATACAG
Found at i:8230444 original size:11 final size:11
Alignment explanation
Indices: 8230428--8230453 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8230418 TGTGGTTGGG
8230428 TTTTTTTTCTT
1 TTTTTTTTCTT
8230439 TTTTTTTTCTT
1 TTTTTTTTCTT
8230450 TTTT
1 TTTT
8230454 AAGATAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:8234654 original size:24 final size:23
Alignment explanation
Indices: 8234595--8234674 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
8234585 CATAGATTCG
*
8234595 ATTATGAATTCTATAAATGAACAA
1 ATTATGAATTGTATAAATGAA-AA
* * *
8234619 TTTTTGTA-TGTATAAATGAAATA
1 ATTATGAATTGTATAAATGAAA-A
*
8234642 ATTATGAATTGTATTAATGAAAA
1 ATTATGAATTGTATAAATGAAAA
* *
8234665 AATATAAATT
1 ATTATGAATT
8234675 CATATGAAGT
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 1 0.02
23 26 0.59
24 17 0.39
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (23 bp):
ATTATGAATTGTATAAATGAAAA
Found at i:8236456 original size:64 final size:63
Alignment explanation
Indices: 8236283--8236462 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 63
8236273 TATAATGTAA
* * * * *
8236283 CATGTGTATAATCAATTGTTGCATTTCTTTAAAGCAAAATGCAATAATTGTTTATTTTTTAAGC
1 CATGTGTATAATCAATT-ATGTATTTCTTTAAAGTAAAATGCAGTAATTGTTTATTTTTTAAAC
* * * ** *
8236347 CATATTTATAATCAATTAT-TATGCTTCTTTGAAGTAAAACACAGTAATTGTTTATTTTTTAAAT
1 CATGTGTATAATCAATTATGTAT--TTCTTTAAAGTAAAATGCAGTAATTGTTTATTTTTTAAAC
*
8236411 CATGTGTATAATCAATTACTGTATTT-TTTAAAAGTTAAATGCAGTAATTGTT
1 CATGTGTATAATCAATTA-TGTATTTCTTT-AAAGTAAAATGCAGTAATTGTT
8236463 CTTTATATTC
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
62 2 0.02
63 4 0.04
64 84 0.89
65 1 0.01
66 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45
Consensus pattern (63 bp):
CATGTGTATAATCAATTATGTATTTCTTTAAAGTAAAATGCAGTAATTGTTTATTTTTTAAAC
Found at i:8237352 original size:22 final size:22
Alignment explanation
Indices: 8237326--8237368 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8237316 TTAATTAATA
* *
8237326 AAATTTGATTCAATTTCAAATG
1 AAATTAGATTCAAATTCAAATG
8237348 AAATTAGATTCAAATTCAAAT
1 AAATTAGATTCAAATTCAAAT
8237369 TGATTTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (22 bp):
AAATTAGATTCAAATTCAAATG
Found at i:8238516 original size:54 final size:54
Alignment explanation
Indices: 8238429--8238538 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
8238419 TTAAAATGAA
* * * *
8238429 AAAATTAATGAAATAAATAACATAAAATGATATAAATAATAGTTTAGTGGAATT
1 AAAATTAAAGAAATAAACAACATAAAATGATATAAATAATAGTTTAATAGAATT
* * *
8238483 AAAATTAAAGTAATAAACAACATAAAATTATATAAATAGTAGTTTAATAGAATT
1 AAAATTAAAGAAATAAACAACATAAAATGATATAAATAATAGTTTAATAGAATT
8238537 AA
1 AA
8238539 TTAAATGAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATTAAAGAAATAAACAACATAAAATGATATAAATAATAGTTTAATAGAATT
Found at i:8239718 original size:11 final size:11
Alignment explanation
Indices: 8239702--8239746 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
8239692 AGAAATGACC
*
8239702 ATATATATGTA
1 ATATATATATA
*
8239713 ATATATACATA
1 ATATATATATA
*
8239724 ACATATATATA
1 ATATATATATA
8239735 TATATATATATA
1 -ATATATATATA
8239747 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (11 bp):
ATATATATATA
Found at i:8241616 original size:12 final size:12
Alignment explanation
Indices: 8241599--8241624 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8241589 AAATTTGAGG
8241599 GAGAAATTTCTA
1 GAGAAATTTCTA
8241611 GAGAAATTTCTA
1 GAGAAATTTCTA
8241623 GA
1 GA
8241625 AAAAATAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (12 bp):
GAGAAATTTCTA
Found at i:8241653 original size:24 final size:23
Alignment explanation
Indices: 8241626--8241670 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8241616 ATTTCTAGAA
8241626 AAAATAGATAAAAATAATTAATGT
1 AAAATAGATAAAAA-AATTAATGT
* *
8241650 AAAATGGTTAAAAAAATTAAT
1 AAAATAGATAAAAAAATTAAT
8241671 TTTATTACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAATAGATAAAAAAATTAATGT
Found at i:8245926 original size:21 final size:23
Alignment explanation
Indices: 8245879--8245927 Score: 75
Period size: 21 Copynumber: 2.2 Consensus size: 23
8245869 TAAAAAGGTT
*
8245879 AAAAAGTTAAATTTATTTTTTAA
1 AAAAAGTTAAATTTATTTTTCAA
8245902 AAAAAG-TAAATTT-TTTTTCAA
1 AAAAAGTTAAATTTATTTTTCAA
8245923 AAAAA
1 AAAAA
8245928 TCAAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.48
22 7 0.28
23 6 0.24
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
AAAAAGTTAAATTTATTTTTCAA
Found at i:8245954 original size:16 final size:17
Alignment explanation
Indices: 8245933--8245964 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8245923 AAAAATCAAA
8245933 AAAATTAT-TTTTTATC
1 AAAATTATGTTTTTATC
8245949 AAAATTATGTTTTTAT
1 AAAATTATGTTTTTAT
8245965 TTATTCGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
AAAATTATGTTTTTATC
Found at i:8246079 original size:9 final size:9
Alignment explanation
Indices: 8246065--8246104 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
8246055 AAAATTAATA
*
8246065 AAAATAATG
1 AAAATAAGG
8246074 AAAATAAGG
1 AAAATAAGG
8246083 AAAATAAGG
1 AAAATAAGG
**
8246092 AAAGGAAGG
1 AAAATAAGG
8246101 AAAA
1 AAAA
8246105 ATTTTTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.10
Consensus pattern (9 bp):
AAAATAAGG
Found at i:8246714 original size:19 final size:19
Alignment explanation
Indices: 8246692--8246757 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
8246682 GTTTAGAAAT
*
8246692 TTTTTAATTTGATTATGTA
1 TTTTTAATTTGATTATATA
* ** *
8246711 TTTTTTATTTTTTTAAATAAAA
1 TTTTTAATTTGATT--AT-ATA
*
8246733 TTTTTAATTTGATTATTTA
1 TTTTTAATTTGATTATATA
8246752 TTTTTA
1 TTTTTA
8246758 TATTATCCTG
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 18 0.53
20 2 0.06
21 2 0.06
22 12 0.35
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTTTAATTTGATTATATA
Found at i:8253876 original size:25 final size:23
Alignment explanation
Indices: 8253800--8253898 Score: 99
Period size: 25 Copynumber: 4.1 Consensus size: 23
8253790 TATTTAGTAT
8253800 TAATATAATATTTGTAATATTTTAA
1 TAATA-AATATTT-TAATATTTTAA
* * ** *
8253825 TGATAAACAATTTCGACATTTTAA
1 TAATAAA-TATTTTAATATTTTAA
*
8253849 TAATAAATAATTTTTAATATTTCAA
1 TAATAAAT-A-TTTTAATATTTTAA
8253874 TAATAAATATTTTAATATTTTAA
1 TAATAAATATTTTAATATTTTAA
8253897 TA
1 TA
8253899 GTTACAAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
23 15 0.25
24 18 0.31
25 26 0.44
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.47
Consensus pattern (23 bp):
TAATAAATATTTTAATATTTTAA
Found at i:8256547 original size:32 final size:32
Alignment explanation
Indices: 8256515--8256584 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
8256505 TATTGGTTTA
* *
8256515 AAAAAATTAAAT-AAAAATTTCATATCATTTT
1 AAAAAATTAAATAAAAAAATTCATATAATTTT
**
8256546 AAAATGTTAAATAAAAAAATTCATATAATTTT
1 AAAAAATTAAATAAAAAAATTCATATAATTTT
*
8256578 TAAAAAT
1 AAAAAAT
8256585 ATATTTATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
31 10 0.32
32 21 0.68
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (32 bp):
AAAAAATTAAATAAAAAAATTCATATAATTTT
Found at i:8259187 original size:32 final size:31
Alignment explanation
Indices: 8259137--8259196 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
8259127 TGTATTATTT
*
8259137 AATTAAAATAATATATTTTAAAATAAAATAGA
1 AATTAAAATAATAAATTTT-AAATAAAATAGA
8259169 AATTAAAA-AACTAAATTTTAAATAAAAT
1 AATTAAAATAA-TAAATTTTAAATAAAAT
8259197 GACATTACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (31 bp):
AATTAAAATAATAAATTTTAAATAAAATAGA
Found at i:8259852 original size:29 final size:30
Alignment explanation
Indices: 8259789--8259853 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
8259779 TTTTTGAAAT
*
8259789 TAAAAATTAAGAAAATCCAAAGCAAATAAA
1 TAAAAATTAAGAAAATCAAAAGCAAATAAA
* * *
8259819 CAAAATTTAA-AAAATCAAAAATCAAA-AAA
1 TAAAAATTAAGAAAATC-AAAAGCAAATAAA
8259848 TAAAAA
1 TAAAAA
8259854 ACAAGGAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.17
Consensus pattern (30 bp):
TAAAAATTAAGAAAATCAAAAGCAAATAAA
Found at i:8260668 original size:24 final size:24
Alignment explanation
Indices: 8260634--8260712 Score: 61
Period size: 24 Copynumber: 3.1 Consensus size: 24
8260624 CATTTTTCAC
8260634 TTATATAATATATATTATTTTATAT
1 TTATAT-ATATATATTATTTTATAT
* *
8260659 TTATATATAT-TGTGTAATTTATAT
1 TTATATATATATAT-TATTTTATAT
* * *
8260683 TATAATAAATATATAATATTATAGTAT
1 T-T-ATATATATATATTATTTTA-TAT
8260710 TTA
1 TTA
8260713 AAAAAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
23 2 0.05
24 14 0.33
25 8 0.19
26 13 0.31
27 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (24 bp):
TTATATATATATATTATTTTATAT
Found at i:8260857 original size:48 final size:50
Alignment explanation
Indices: 8260780--8260878 Score: 130
Period size: 48 Copynumber: 2.0 Consensus size: 50
8260770 GATTTTTTGG
* *
8260780 TTTTTATTAATTGTGAATTGTTAAGAAATTGT-GAG-TTTCTTGGTTTTT
1 TTTTTATTAATCGTGAATTATTAAGAAATTGTGGAGTTTTCTTGGTTTTT
* * * *
8260828 TTTTTATTGATCGTGAATTATTAATAAATTGTGGGGTTTTTTTGGTTTTT
1 TTTTTATTAATCGTGAATTATTAAGAAATTGTGGAGTTTTCTTGGTTTTT
8260878 T
1 T
8260879 ATTGGTTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 28 0.65
49 2 0.05
50 13 0.30
ACGTcount: A:0.21, C:0.02, G:0.19, T:0.58
Consensus pattern (50 bp):
TTTTTATTAATCGTGAATTATTAAGAAATTGTGGAGTTTTCTTGGTTTTT
Found at i:8262905 original size:13 final size:13
Alignment explanation
Indices: 8262873--8262906 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8262863 ATAACGTTAC
* *
8262873 CCAAATCTTGTCG
1 CCAAATTTTATCG
8262886 CCAAATTTTATCG
1 CCAAATTTTATCG
8262899 CCAAATTT
1 CCAAATTT
8262907 AGTAGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.35
Consensus pattern (13 bp):
CCAAATTTTATCG
Found at i:8263575 original size:235 final size:235
Alignment explanation
Indices: 8262936--8263603 Score: 789
Period size: 236 Copynumber: 2.8 Consensus size: 235
8262926 ATGTTTTTTT
** *
8262936 TTTTATTTTAGGTGATGTTATAATTTTGTCATAAATTTAAACTTTTATCTGTGA-CAAATTTTTT
1 TTTTATTTTAGGTGATGTTATAATTTTGTCACCAATTTAAACTTTTATCTGTGATGAAATTTTTT
* * *
8263000 TAATAGATTTTAGGTGACATTATTAATTTTTGTTACAAACTGAACACTTTAGTTAGCTATTAATG
66 TGATAGATTTTAGGTGACATTATTAATTTTTGTTACAAATTGAACACTTTAGTTAACTATTAATG
* * * * ** *
8263065 ACATTGCTATTTCATCATGTCTATGTACT-GCATTATATGATGGTAACATAAATGTCACAAACTT
131 ATATTGCAATTTCGTCATGTCAATGTA-TGGTGTTATATGATGATAACATAAATGTCACAAACTT
* * * ***
8263129 TT-TCATCAAGTTTTTTTAAGGGGAATTTTTTTATGGCATTTT
195 TTACCAACAAGTTTTTTT-AGGGAAATTTTTTTAT-GCATAAC
* * *
8263171 TGTTTATTTTAGGTGATATTATAATTTTATCACCAATTTAAAATTTTATCTGTGATG-AATTTTT
1 T-TTTATTTTAGGTGATGTTATAATTTTGTCACCAATTTAAACTTTTATCTGTGATGAAATTTTT
** * * * * *
8263235 TTGATAGATTTTAGGTGATGTTACTAATTTTTATTACAAATTGAATACTTTGGTTAATTATTAAT
65 TTGATAGATTTTAGGTGACATTATTAATTTTTGTTACAAATTGAACACTTTAGTTAACTATTAAT
* * * *
8263300 GATATTGTAATTTTGTCATGTTAATGTATGGTGTTATATGACGATAACATAAATGTCACAAACTT
130 GATATTGCAATTTCGTCATGTCAATGTATGGTGTTATATGATGATAACATAAATGTCACAAACTT
8263365 TTACCAACAA-TTTTATTT-GGTGAAAAATTTTTTT-T-C-TAAC
195 TTACCAACAAGTTTT-TTTAGG-G--AAATTTTTTTATGCATAAC
* * * *
8263405 TTTT-TTTTGGGTGACGTTATAATTTTGTTACCAATTTAAACTTTTATCTATGATGAAATTTTTT
1 TTTTATTTTAGGTGATGTTATAATTTTGTCACCAATTTAAACTTTTATCTGTGATGAAA-TTTTT
* *
8263469 TTGATAGATTTTAGGTGACATTATTTAATTTTTGTCACAAGTTGAACACTTTAGTTAACTATTAA
65 TTGATAGATTTTAGGTGACATTA-TTAATTTTTGTTACAAATTGAACACTTTAGTTAACTATTAA
* ** *
8263534 TGATATTGCAATTTCGTAACATCAATGCATGGTGTTATATGATGATAACATAAATGTCACAAACT
129 TGATATTGCAATTTCGTCATGTCAATGTATGGTGTTATATGATGATAACATAAATGTCACAAACT
8263599 TTTAC
194 TTTAC
8263604 AGCCAAATTT
Statistics
Matches: 365, Mismatches: 57, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
232 44 0.12
233 5 0.01
234 28 0.08
235 101 0.28
236 169 0.46
237 9 0.02
238 9 0.02
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (235 bp):
TTTTATTTTAGGTGATGTTATAATTTTGTCACCAATTTAAACTTTTATCTGTGATGAAATTTTTT
TGATAGATTTTAGGTGACATTATTAATTTTTGTTACAAATTGAACACTTTAGTTAACTATTAATG
ATATTGCAATTTCGTCATGTCAATGTATGGTGTTATATGATGATAACATAAATGTCACAAACTTT
TACCAACAAGTTTTTTTAGGGAAATTTTTTTATGCATAAC
Found at i:8265984 original size:11 final size:11
Alignment explanation
Indices: 8265953--8265986 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8265943 AAATGATGGC
*
8265953 ACTTCAGTTAA
1 ACTTCAGTTGA
*
8265964 ACTTTAGTTGA
1 ACTTCAGTTGA
8265975 ACTTCAGTTGA
1 ACTTCAGTTGA
8265986 A
1 A
8265987 TAAAGTAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (11 bp):
ACTTCAGTTGA
Found at i:8269499 original size:10 final size:10
Alignment explanation
Indices: 8269484--8269508 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8269474 ATTTCTAGGT
8269484 ATATACTTCA
1 ATATACTTCA
8269494 ATATACTTCA
1 ATATACTTCA
8269504 ATATA
1 ATATA
8269509 TCTATGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATACTTCA
Found at i:8270837 original size:201 final size:201
Alignment explanation
Indices: 8270283--8271056 Score: 816
Period size: 201 Copynumber: 3.9 Consensus size: 201
8270273 TAAAATTTAA
* * *
8270283 TGACGTTAATTGTGTCACTAATACTATGATATCATTTA-TCTTTCATCACTAATATATCATATTT
1 TGACGATAATTGTGTCACCAATACTATGATA--ATTTACT-TTTCATCACTAATATATCAGATTT
* * * * ** * * * *
8270347 TAGTATTTATTTTGTAAAGATTATAAATTTTAAGGACCTTTTTTTTCATATATAGC-TAACGAAA
63 TATTATTTATTTTATGATGATTATAACCTTTAATGA-CTTTTTTTTCATAAATAACTTATCGAAA
* * * * * *
8270411 TCTAATGTCACAAAAAAAA--A-AAGGTGACGTTTTATTTTATTGTCATGTTTAACATTATCTTA
127 ACTAATATCACAAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCACGTTTGACATTATCTTA
* *
8270473 CAATAATTTG
192 CAATCATTAG
* * * * * * *
8270483 TGATGTTAATTGTGTCACCAATACTATGAAAATTTACCTTTCATCATTAATATGTCATATTTTAT
1 TGACGATAATTGTGTCACCAATACTATGATAATTTACTTTTCATCACTAATATATCAGATTTTAT
* * *
8270548 CATTTATTTTATGATGATTATAACCTTCAATGA-TGTTTTTCTTCATAAATAACTAAT-GAAAAC
66 TATTTATTTTATGATGATTATAACCTTTAATGACT-TTTTT-TTCATAAATAACTTATCGAAAAC
* * * *
8270611 TAATGTCACAAAAAAAAGCATAAGGTGACATTTGATTTTATAGTCACGTTTGACATTATTTTATA
129 TAATATCACAAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCACGTTTGACATTATCTTACA
*
8270676 ATCATTGG
194 ATCATTAG
* *
8270684 TGACGATAATTATGTCACCAATACTAT-ACAATTTACTTTTCATCACTAATATATCAGATTTTAT
1 TGACGATAATTGTGTCACCAATACTATGATAATTTACTTTTCATCACTAATATATCAGATTTTAT
* * *
8270748 TATTTATTTTATGATGATTATAGCTTTTAATGACTTTTCTTTT-ATAAAT-AGTTATCGAAAACT
66 TATTTATTTTATGATGATTATAACCTTTAATGACTTTT-TTTTCATAAATAACTTATCGAAAACT
* * * *
8270811 AACATCATAAAAAATAAAGTATAAGGTGACATTTGATTTTATTGTTACGTTTGACATTATCTTAC
130 AATATCA-CAAAAA-AAAGCATAAGGTGACATTTGATTTTATTGTCACGTTTGACATTATCTTAC
8270876 AATCATTAG
193 AATCATTAG
* * * * * * * *
8270885 TGATGATAATTGTGTCACCAATATTGTGATGATTTTCTTTTTATCACTAATACATCAGATTTTAC
1 TGACGATAATTGTGTCACCAATACTATGATAATTTACTTTTCATCACTAATATATCAGATTTTAT
* ** * * * * *
8270950 TATTTATTTTGTGACAATTATAGCCTTTAATAAC-TTTTTTTCTTAAATAACTGA-CAAAAACTA
66 TATTTATTTTATGATGATTATAACCTTTAATGACTTTTTTTTCATAAATAACTTATCGAAAACTA
* *
8271013 ATATCACAAAAAAAAGCATAAAGTGATATTTGATTTTATTGTCA
131 ATATCACAAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCA
8271057 TGGTAGATTC
Statistics
Matches: 482, Mismatches: 77, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
196 1 0.00
197 5 0.01
198 90 0.19
199 47 0.10
200 109 0.23
201 167 0.35
202 63 0.13
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (201 bp):
TGACGATAATTGTGTCACCAATACTATGATAATTTACTTTTCATCACTAATATATCAGATTTTAT
TATTTATTTTATGATGATTATAACCTTTAATGACTTTTTTTTCATAAATAACTTATCGAAAACTA
ATATCACAAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCACGTTTGACATTATCTTACAAT
CATTAG
Found at i:8272205 original size:49 final size:49
Alignment explanation
Indices: 8272152--8272248 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
8272142 TTTGATTTTC
* * *
8272152 AATTCAACTTTTTACTATTTATTTTTTTATGAATTTAAAGAATGATACA
1 AATTCAAATTTTGACTATTTATTTTTTTATCAATTTAAAGAATGATACA
* * * *
8272201 AATTCAAATTTTGATTGTTTATTTTTTTGTCAATTTAAAGATTGATAC
1 AATTCAAATTTTGACTATTTATTTTTTTATCAATTTAAAGAATGATAC
8272249 CTTTATGCGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (49 bp):
AATTCAAATTTTGACTATTTATTTTTTTATCAATTTAAAGAATGATACA
Found at i:8279174 original size:71 final size:71
Alignment explanation
Indices: 8279022--8279200 Score: 184
Period size: 71 Copynumber: 2.5 Consensus size: 71
8279012 TGAAAACGTG
* * ** * *
8279022 ATTTTTGTTAAAATTTCATAATTTTCAAAAATAAAGTTTTAACATCCATTATGTTTTTTATTAAA
1 ATTTTTGTTAAAATTTTAGAATTTTCAAAAATAAAGTTTTAACATCCACGACGTTTTATATTAAA
8279087 AAATGCA
66 AAAT-CA
* * * * * *
8279094 GTCTGTGTTAAAATTTTA-AATTTTCAAAAATAAAGTTTTAATATTCACGACGTTTTAATCTTAA
1 ATTTTTGTTAAAATTTTAGAATTTTCAAAAATAAAGTTTTAACATCCACGACGTTTT-ATATTAA
8279158 AAACAT-A
65 AAA-ATCA
* *
8279165 ATTTTTGTTAAAATTCTAGAA-TTTCTAAAATAAAGT
1 ATTTTTGTTAAAATTTTAGAATTTTCAAAAATAAAGT
8279201 CTCAACAACC
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
71 62 0.70
72 24 0.27
73 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (71 bp):
ATTTTTGTTAAAATTTTAGAATTTTCAAAAATAAAGTTTTAACATCCACGACGTTTTATATTAAA
AAATCA
Found at i:8279566 original size:71 final size:71
Alignment explanation
Indices: 8279368--8279598 Score: 204
Period size: 71 Copynumber: 3.2 Consensus size: 71
8279358 TAAAAACACG
* * * * * *
8279368 ATCTTTGTTAAAATTTCATAA-TTTCGAAGATATAGTTTAAACATCTACTACATTTTTATCTTTA
1 ATCTTTGTTAAAATTTCAGAATTTTCAAAAATATAGTTTAAACATCCAATACATTTTTATCTTAA
8279432 AAATGT
66 AAATGT
* * * * *
8279438 AGTCTTTATTAAAATTT-AGAATTTT-AAAAATATAATTTCAATA-CCTATTACATTTTTTATCT
1 A-TCTTTGTTAAAATTTCAGAATTTTCAAAAATATAGTTTAAACATCC-AATACA-TTTTTATCT
*
8279500 TAAAAATATT
63 TAAAAAT-GT
* * *
8279510 ATCTTTGTTAAAATTTCA-AATTTTCAAAAAGATAGTTTTAACATCCAATACCTTTTTTTATCTT
1 ATCTTTGTTAAAATTTCAGAATTTTCAAAAATATAGTTTAAACATCCAATA-C-ATTTTTATCTT
*
8279574 AAAAAAGT
64 AAAAATGT
8279582 AGT-TTATGTTAAAATTT
1 A-TCTT-TGTTAAAATTT
8279599 TGAAAATATA
Statistics
Matches: 129, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
69 1 0.01
70 22 0.17
71 52 0.40
72 24 0.19
73 30 0.23
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.46
Consensus pattern (71 bp):
ATCTTTGTTAAAATTTCAGAATTTTCAAAAATATAGTTTAAACATCCAATACATTTTTATCTTAA
AAATGT
Found at i:8279752 original size:74 final size:73
Alignment explanation
Indices: 8279667--8279848 Score: 215
Period size: 74 Copynumber: 2.5 Consensus size: 73
8279657 ATCTACTACA
* * * *
8279667 TTTTTATCTTAAAAATGC-GATCTTTGTTAAAATTTCATAA-TTTCAAAAATATAATTTTAAGAT
1 TTTTTATCTTAAAAATGCAG-TATTTGTTAAAATTTCA-AACTTTCAAAAATATAATTTCAACAC
*
8279730 CCATTACATTT
64 CCACTAC-TTT
* * * * *
8279741 TTTTTAACTTAAAGAGGCAGTTTTTGTTAAAATTTCAAACTTTCAAAAATATAGTTTCAACACCC
1 TTTTTATCTTAAAAATGCAGTATTTGTTAAAATTTCAAACTTTCAAAAATATAATTTCAACACCC
8279806 ACTACTTT
66 ACTACTTT
* *
8279814 TTTTTTTCTTTAAAATGCAGTATTTGTTAAAATTT
1 TTTTTATCTTAAAAATGCAGTATTTGTTAAAATTT
8279849 TGAAAATATA
Statistics
Matches: 91, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
73 34 0.37
74 56 0.62
75 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (73 bp):
TTTTTATCTTAAAAATGCAGTATTTGTTAAAATTTCAAACTTTCAAAAATATAATTTCAACACCC
ACTACTTT
Found at i:8279787 original size:250 final size:247
Alignment explanation
Indices: 8279410--8279891 Score: 627
Period size: 250 Copynumber: 1.9 Consensus size: 247
8279400 TAGTTTAAAC
* * *
8279410 ATCTACTACATTTTTATCTTTAAAATGTAGTCTTTATTAAAATTTAGAATTTTAAAAATATAATT
1 ATCTACTACATTTTTATCTTAAAAATGGAGTCTTTATTAAAATTTAGAATTTCAAAAATATAATT
* * * * *
8279475 TCAATACCTATTACATTTTTTATCTTAAAAATATTATCTTTGTTAAAATTTCAAATTTTCAAAAA
66 TCAAGACCTATTACATTTTTTAACTTAAAAACAGTATCTTTGTTAAAATTTCAAACTTTCAAAAA
* * *
8279540 GATAGTTTTAACATCCAATACCTTTTTTTATCTTAAAAAAGTAGT-TTATGTTAAAATTTTGAAA
131 GATAGTTTCAACACCCAATACCTTTTTTTATCTTAAAAAAGCAGTATT-TGTTAAAATTTTGAAA
*
8279604 ATATAGTTTCAACAT-CATTACGT-TTTTTATCTTAAAATTTTGATTTTTTTAAT
195 ATATAATTTCAACATCCATTA--TATTTTTATCTTAAAATTTTGATTTTTTTAAT
* *
8279657 ATCTACTACATTTTTATCTTAAAAATGCGA-TCTTTGTTAAAATTTCATAATTTCAAAAATATAA
1 ATCTACTACATTTTTATCTTAAAAATG-GAGTCTTTATTAAAATTT-AGAATTTCAAAAATATAA
* *
8279721 TTTTAAGATCC-ATTACATTTTTTTTAACTTAAAGAGGCAGT-T-TTTGTTAAAATTTCAAACTT
64 TTTCAAGA-CCTATTACA--TTTTTTAACTTAAA-A-ACAGTATCTTTGTTAAAATTTCAAACTT
* * * * * *
8279783 TCAAAAATATAGTTTCAACACCCACTACTTTTTTTTTTCTTTAAAATGCAGTATTTGTTAAAATT
124 TCAAAAAGATAGTTTCAACACCCAATACCTTTTTTTATCTTAAAAAAGCAGTATTTGTTAAAATT
8279848 TTGAAAATATAATTTCAACATCCATTATATTTTTATCTTAAAAT
189 TTGAAAATATAATTTCAACATCCATTATATTTTTATCTTAAAAT
8279892 CACGATATTT
Statistics
Matches: 203, Mismatches: 22, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
247 40 0.20
248 29 0.14
249 3 0.01
250 120 0.59
251 9 0.04
252 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (247 bp):
ATCTACTACATTTTTATCTTAAAAATGGAGTCTTTATTAAAATTTAGAATTTCAAAAATATAATT
TCAAGACCTATTACATTTTTTAACTTAAAAACAGTATCTTTGTTAAAATTTCAAACTTTCAAAAA
GATAGTTTCAACACCCAATACCTTTTTTTATCTTAAAAAAGCAGTATTTGTTAAAATTTTGAAAA
TATAATTTCAACATCCATTATATTTTTATCTTAAAATTTTGATTTTTTTAAT
Found at i:8279912 original size:63 final size:65
Alignment explanation
Indices: 8279786--8279917 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 65
8279776 CAAACTTTCA
* * *
8279786 AAAATATAGTTTCAACACCCACTACTTTTTTTTTTCTTTAAAATGCAGTATTTGTTAAAATTTT-
1 AAAATATAATTTCAACACCCACTAC-TATTTTTATCTTTAAAATGCAGTATTTGTTAAAATTTTA
8279850 G
65 G
* *
8279851 AAAATATAATTTCAACATCCATTA-TATTTTTATC-TTAAAAT-CACGATATTTGTTAAAATTTT
1 AAAATATAATTTCAACACCCACTACTATTTTTATCTTTAAAATGCA-G-TATTTGTTAAAATTTT
8279913 AG
64 AG
8279915 AAA
1 AAA
8279918 TTTGAAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
61 2 0.03
62 8 0.14
63 24 0.41
64 4 0.07
65 21 0.36
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (65 bp):
AAAATATAATTTCAACACCCACTACTATTTTTATCTTTAAAATGCAGTATTTGTTAAAATTTTAG
Found at i:8279978 original size:70 final size:71
Alignment explanation
Indices: 8279847--8280066 Score: 214
Period size: 70 Copynumber: 3.1 Consensus size: 71
8279837 TTGTTAAAAT
* * * * *
8279847 TTTGAAAATATAATTTCAACATCCATTATATTTTTATCTTAAAATCACGATATTTGTTAAAATTT
1 TTTGAAAATATAATTTCAACATCCACTATATTTTTATCTTAAAAACAAGATATTTATTAAAATTC
8279912 TAGAAA
66 TAGAAA
* * * *
8279918 TTTGAAAATATAGTTTCAACTTCCACTAT-TTTTTATTTTAAAAACATAG-TTTTTATTAAAATT
1 TTTGAAAATATAATTTCAACATCCACTATATTTTTATCTTAAAAACA-AGATATTTATTAAAATT
*
8279981 CTAGAAT
65 CTAGAAA
* * ** * * *
8279988 TTTGAAAATAAAATTTTAACATTTAGTACGT-TTTTTATCTTAAAAATATGATATTTATTAAAAT
1 TTTGAAAATATAATTTCAACATCCACTA--TATTTTTATCTTAAAAACAAGATATTTATTAAAAT
*
8280052 TATA-AAA
64 TCTAGAAA
*
8280059 TTTCAAAA
1 TTTGAAAA
8280067 AAATATTTAA
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
70 53 0.44
71 37 0.31
72 31 0.26
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (71 bp):
TTTGAAAATATAATTTCAACATCCACTATATTTTTATCTTAAAAACAAGATATTTATTAAAATTC
TAGAAA
Found at i:8296957 original size:3 final size:3
Alignment explanation
Indices: 8296949--8297023 Score: 64
Period size: 3 Copynumber: 25.0 Consensus size: 3
8296939 ATAATGGTGC
* * * *
8296949 TGA TGA TGA TGA TGA TGA GGCA -GA GGA TGA TGA TGA TAA TAA TCG-
1 TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA TGA TGA TGA T-GA
* *
8296994 TGA TGA TGA TGA TGA TCA TGA TGA TAA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
8297024 AACACATGAG
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
2 2 0.03
3 57 0.95
4 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.31, T:0.29
Consensus pattern (3 bp):
TGA
Found at i:8299522 original size:15 final size:15
Alignment explanation
Indices: 8299502--8299530 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8299492 GATGGATGCT
8299502 ATGGATATTTTATGG
1 ATGGATATTTTATGG
8299517 ATGGATATTTTATG
1 ATGGATATTTTATG
8299531 ATGTTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (15 bp):
ATGGATATTTTATGG
Found at i:8299539 original size:10 final size:11
Alignment explanation
Indices: 8299517--8299569 Score: 65
Period size: 11 Copynumber: 4.8 Consensus size: 11
8299507 TATTTTATGG
*
8299517 ATGGATATTTT
1 ATGGATGTTTT
8299528 AT-GATGTTTT
1 ATGGATGTTTT
8299538 ATGGATGTTTT
1 ATGGATGTTTT
8299549 AT-GATGTATTT
1 ATGGATGT-TTT
8299560 GATGGATGTT
1 -ATGGATGTT
8299570 ATCTGAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
10 14 0.38
11 15 0.41
12 3 0.08
13 5 0.14
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (11 bp):
ATGGATGTTTT
Found at i:8299543 original size:21 final size:23
Alignment explanation
Indices: 8299516--8299566 Score: 79
Period size: 21 Copynumber: 2.3 Consensus size: 23
8299506 ATATTTTATG
8299516 GATGGATATTTTATGATGT-TTT
1 GATGGATATTTTATGATGTATTT
*
8299538 -ATGGATGTTTTATGATGTATTT
1 GATGGATATTTTATGATGTATTT
8299560 GATGGAT
1 GATGGAT
8299567 GTTATCTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 17 0.65
22 3 0.12
23 6 0.23
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (23 bp):
GATGGATATTTTATGATGTATTT
Found at i:8303744 original size:6 final size:6
Alignment explanation
Indices: 8303733--8303765 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
8303723 AAACGTGTCC
8303733 CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCC
1 CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCC
8303766 TTTTCTGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCCCT
Found at i:8305147 original size:1 final size:1
Alignment explanation
Indices: 8305141--8305170 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
8305131 GCAATGAATT
8305141 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8305171 GCTGATTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8305804 original size:25 final size:24
Alignment explanation
Indices: 8305768--8305823 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
8305758 ATTAAATGAT
* *
8305768 AATTAGAATGTATAGATAATTTTTA
1 AATT-GAATGTATAAATAAATTTTA
8305793 AATTGAAGTGTATAAATAAATTTTA
1 AATTGAA-TGTATAAATAAATTTTA
8305818 AATTGA
1 AATTGA
8305824 CAAATATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.41
Consensus pattern (24 bp):
AATTGAATGTATAAATAAATTTTA
Found at i:8305858 original size:13 final size:13
Alignment explanation
Indices: 8305840--8305864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8305830 TATTTCAAAT
8305840 TAATAATAATAAA
1 TAATAATAATAAA
8305853 TAATAATAATAA
1 TAATAATAATAA
8305865 GTGATATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:8306779 original size:26 final size:27
Alignment explanation
Indices: 8306719--8306779 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
8306709 TTATTTTATT
8306719 TATTTCTTTATTTTGCATTTATAAAAAA
1 TATTT-TTTATTTTGCATTTATAAAAAA
* * * *
8306747 TAATTTTTATTTT-TATTTATCAAATA
1 TATTTTTTATTTTGCATTTATAAAAAA
8306773 TATTTTT
1 TATTTTT
8306780 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 16 0.57
27 8 0.29
28 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
TATTTTTTATTTTGCATTTATAAAAAA
Found at i:8308392 original size:20 final size:20
Alignment explanation
Indices: 8308353--8308392 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8308343 ATTTGTTAAG
8308353 TTTTTTTATTTTAATATATA
1 TTTTTTTATTTTAATATATA
8308373 TTTTTATTATTTTAAT-TATA
1 TTTTT-TTATTTTAATATATA
8308393 AAATTACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTTTATTTTAATATATA
Found at i:8308521 original size:2 final size:2
Alignment explanation
Indices: 8308514--8308538 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8308504 CTTCCTATGA
8308514 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
8308539 ACTCCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:8311918 original size:2 final size:2
Alignment explanation
Indices: 8311911--8311938 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8311901 ACAATAAATA
8311911 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8311939 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8313217 original size:30 final size:30
Alignment explanation
Indices: 8313161--8313217 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8313151 AGTCTAATTA
*
8313161 TTTTATTTTTCATTTTTCCTTCTTTTTATT
1 TTTTATTTTTCATTTTTCCCTCTTTTTATT
*
8313191 TTTTATTTTTCCCTTTTTCCCT-TTTTT
1 TTTTATTTTT-CATTTTTCCCTCTTTTT
8313218 GAATAATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (30 bp):
TTTTATTTTTCATTTTTCCCTCTTTTTATT
Found at i:8313660 original size:21 final size:21
Alignment explanation
Indices: 8313634--8313673 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8313624 TTTAAACTAC
8313634 AAAAGAAAAAGAA-AGAAAAGG
1 AAAAGAAAAA-AATAGAAAAGG
8313655 AAAAGAAAAAAATAGAAAA
1 AAAAGAAAAAAATAGAAAA
8313674 ATATTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAAAATAGAAAAGG
Found at i:8314915 original size:10 final size:10
Alignment explanation
Indices: 8314893--8314923 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
8314883 ATAATTAAGT
8314893 AAATTTATAAA
1 AAATTT-TAAA
8314904 AAATTTTAAA
1 AAATTTTAAA
8314914 AAATTTTAAA
1 AAATTTTAAA
8314924 GCTAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:8315457 original size:128 final size:127
Alignment explanation
Indices: 8315322--8315561 Score: 365
Period size: 128 Copynumber: 1.9 Consensus size: 127
8315312 GATAGATATC
8315322 AAAATTATTAAAAAATTAATTTTAAAAGATAAAAAGATATATATTTAAAATATATATCTAAATTA
1 AAAATTATTAAAAAATTAATTTTAAAAGATAAAAAGATATATATTTAAAATATATA-C-AAATTA
*
8315387 TTATAAAATT-ATTTTGGATAACTAATAAATTTTGAATACTTTTATTTAGTAGATAAATACCAT
64 TTAGAAAATTAATTTTGGATAACTAATAAATTTTGAATACTTTTATTTAGTAGATAAATACCAT
** * * * * *
8315450 AAAATTATTAGTAAATTCATTTTAGAATATAAAAAGATATATGTTTAAATTATATACAAATTATT
1 AAAATTATTAAAAAATTAATTTTAAAAGATAAAAAGATATATATTTAAAATATATACAAATTATT
* *
8315515 AGAAAATTAATTTTGGATAACTTATAAATTTTGAATATTTTTATTTA
66 AGAAAATTAATTTTGGATAACTAATAAATTTTGAATACTTTTATTTA
8315562 TTTGATTAAT
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
126 15 0.15
127 37 0.37
128 49 0.49
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (127 bp):
AAAATTATTAAAAAATTAATTTTAAAAGATAAAAAGATATATATTTAAAATATATACAAATTATT
AGAAAATTAATTTTGGATAACTAATAAATTTTGAATACTTTTATTTAGTAGATAAATACCAT
Found at i:8316488 original size:22 final size:22
Alignment explanation
Indices: 8316429--8316490 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
8316419 TTTAAATTTA
* **
8316429 AAAAGATATATATCTAAACTAT
1 AAAAGATATATATTTAAAAGAT
*
8316451 TAAAGA-AT-TAATTTTAAAAGAT
1 AAAAGATATAT-A-TTTAAAAGAT
8316473 AAAAGATATATATTTAAA
1 AAAAGATATATATTTAAA
8316491 TTATATATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
20 1 0.03
21 3 0.10
22 23 0.74
23 3 0.10
24 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (22 bp):
AAAAGATATATATTTAAAAGAT
Found at i:8316506 original size:15 final size:15
Alignment explanation
Indices: 8316478--8316509 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8316468 AAGATAAAAG
*
8316478 ATATATATTTAAATT
1 ATATATATCTAAATT
8316493 ATATATATCTAAATT
1 ATATATATCTAAATT
8316508 AT
1 AT
8316510 TAGAAAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATATATCTAAATT
Found at i:8316761 original size:50 final size:52
Alignment explanation
Indices: 8316705--8316804 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 52
8316695 ATTTTAAAAG
*
8316705 ATAAAAGATATCTATTTAAATTATACA-A-CTAAATTATTAGAAAATTAAAC
1 ATAAAAGATATATATTTAAATTATACATATCTAAATTATTAGAAAATTAAAC
* *
8316755 ATAAAAGATATATATTTAAATTATATATATGTAAATTATTAGAAAATTAA
1 ATAAAAGATATATATTTAAATTATACATATCTAAATTATTAGAAAATTAA
8316805 TTTTGGTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 25 0.56
51 1 0.02
52 19 0.42
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (52 bp):
ATAAAAGATATATATTTAAATTATACATATCTAAATTATTAGAAAATTAAAC
Found at i:8316781 original size:13 final size:15
Alignment explanation
Indices: 8316762--8316793 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8316752 AACATAAAAG
*
8316762 ATATATATTTAAATT
1 ATATATATGTAAATT
8316777 ATATATATGTAAATT
1 ATATATATGTAAATT
8316792 AT
1 AT
8316794 TAGAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATATATATGTAAATT
Found at i:8316791 original size:151 final size:155
Alignment explanation
Indices: 8316604--8316906 Score: 411
Period size: 158 Copynumber: 1.9 Consensus size: 155
8316594 TTAGAAGATA
*
8316604 AAAAAATATATAGTTAAATTTTATATATTTGTAAATTATTAGAAAATTAATTTTGG-ATAACTAA
1 AAAAAATATATAGTTAAA-TTTATATATATGTAAATTATTAGAAAATTAATTTTGGTATAACTAA
* *
8316668 TAA-TTTTAAATAATTTTTATTTGA-TTG-ATTTTAAAAGAT-AAAAGATATCTATTTAAATTAT
65 TAATTTTTAAAT-ATTTTTATTT-ATTTGCATTTTAAAAAATAAAAAGATATATATTTAAATTAT
*
8316729 ACAACTAAATTATTAGAAAATTAAACAT
128 ACAACTAAATTATTAAAAAATTAAACAT
* * *
8316757 AAAAGATATATATTTAAA-TTATATATATGTAAATTATTAGAAAATTAATTTTGGTTTAACTAAT
1 AAAAAATATATAGTTAAATTTATATATATGTAAATTATTAGAAAATTAATTTTGGTATAACTAAT
8316821 AATTTTTAAATATTTTTATTTATTTGCTCAATTTTAAAAAATAAAAAAGATATATATTTAAATTA
66 AATTTTTAAATATTTTTATTTATTTG--C-ATTTTAAAAAAT-AAAAAGATATATATTTAAATTA
* * *
8316886 TATATCTGAATTATTAAAAAA
127 TACAACTAAATTATTAAAAAA
8316907 AAAATTTTTG
Statistics
Matches: 131, Mismatches: 10, Indels: 13
0.85 0.06 0.08
Matches are distributed among these distances:
151 36 0.27
152 23 0.18
153 24 0.18
156 11 0.08
158 37 0.28
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.44
Consensus pattern (155 bp):
AAAAAATATATAGTTAAATTTATATATATGTAAATTATTAGAAAATTAATTTTGGTATAACTAAT
AATTTTTAAATATTTTTATTTATTTGCATTTTAAAAAATAAAAAGATATATATTTAAATTATACA
ACTAAATTATTAAAAAATTAAACAT
Found at i:8317590 original size:29 final size:30
Alignment explanation
Indices: 8317545--8317606 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
8317535 ATCCACATCT
8317545 TATTGGTAAGAAAATAAAGCTAAATAAGGC
1 TATTGGTAAGAAAATAAAGCTAAATAAGGC
*
8317575 TATTGG-AAGAAGATAAAGCTAAATAAGGC
1 TATTGGTAAGAAAATAAAGCTAAATAAGGC
8317604 TAT
1 TAT
8317607 CTTTTTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24
Consensus pattern (30 bp):
TATTGGTAAGAAAATAAAGCTAAATAAGGC
Found at i:8320746 original size:19 final size:19
Alignment explanation
Indices: 8320700--8320746 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8320690 AAAAATAATC
*
8320700 ATTAAATTATTAAAAATTTA
1 ATTAAA-TAATAAAAATTTA
*
8320720 ATTTAATAATAAAAATTTCA
1 ATTAAATAATAAAAATTT-A
8320740 A-TAAATA
1 ATTAAATA
8320747 TTTTTTTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTAAATAATAAAAATTTA
Found at i:8325333 original size:2 final size:2
Alignment explanation
Indices: 8325326--8325364 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8325316 TCAAAGTAAA
8325326 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8325365 ATAGGAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8325540 original size:5 final size:5
Alignment explanation
Indices: 8325508--8325538 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
8325498 AGTTCAACAG
*
8325508 AAAGA AAAGA AAAGA AAAGA AAAGA ATAGA A
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA A
8325539 TAAAAGGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:8332353 original size:106 final size:107
Alignment explanation
Indices: 8332175--8332400 Score: 395
Period size: 106 Copynumber: 2.1 Consensus size: 107
8332165 GACCTATTGG
* *
8332175 CCAAAAAC-ATTT-TGGACTTATGTCTAACCAAATTATTGTGGACTATCAATGTGTTTAGATATG
1 CCAAGAACGATTTATGGACTTATGTCTAACCAAATTATTGTAGACTATCAATGTGTTTAGATATG
8332238 AGACTTTATAATC-AATATCTTTATAATTCACCCTTACTATT
66 AGACTTTATAATCGAATATCTTTATAATTCACCCTTACTATT
*
8332279 CCAAGAATGATTTATGGACTTATGTCTAACCAAATTATTGTAGACTATCAATGTGTTTAGATATG
1 CCAAGAACGATTTATGGACTTATGTCTAACCAAATTATTGTAGACTATCAATGTGTTTAGATATG
*
8332344 GGACTTTATAATCGAATATCTTTATAATTCACCCTTACTATT
66 AGACTTTATAATCGAATATCTTTATAATTCACCCTTACTATT
8332386 CCAAGAACGATTTAT
1 CCAAGAACGATTTAT
8332401 TGGGAATTTT
Statistics
Matches: 114, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
104 6 0.05
105 4 0.04
106 62 0.54
107 42 0.37
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (107 bp):
CCAAGAACGATTTATGGACTTATGTCTAACCAAATTATTGTAGACTATCAATGTGTTTAGATATG
AGACTTTATAATCGAATATCTTTATAATTCACCCTTACTATT
Found at i:8334061 original size:107 final size:110
Alignment explanation
Indices: 8333875--8334077 Score: 306
Period size: 107 Copynumber: 1.9 Consensus size: 110
8333865 TTGTCTTAAG
* * * *
8333875 AAAAATTATTAAATTTTCCAATAGTTTGGTAAGATTTTACTTTGAGATTTAAATATTCCAATAGT
1 AAAAATCATTAAATCTTCCAATAGTTTGGTAAGATTTTAATTTAAGATTTAAATATTCCAATAGT
8333940 TTGATAGGACTAAAAAT-T-TTATTTATTAATTTATTTCTTTTAT
66 TTGATAGGACTAAAAATATATTATTTATTAATTTATTTCTTTTAT
*
8333983 AAAAATCATTAAATCTTCTAATAGTTTGGTAAGA-TTTAATTTAAGATTTAAAT-TCTCCAATAG
1 AAAAATCATTAAATCTTCCAATAGTTTGGTAAGATTTTAATTTAAGATTTAAATAT-TCCAATAG
* *
8334046 TTTGATAGGATTAAAAATATATTTTTTATTAA
65 TTTGATAGGACTAAAAATATATTATTTATTAA
8334078 ATTTTCTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
106 1 0.01
107 42 0.49
108 32 0.38
109 10 0.12
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.46
Consensus pattern (110 bp):
AAAAATCATTAAATCTTCCAATAGTTTGGTAAGATTTTAATTTAAGATTTAAATATTCCAATAGT
TTGATAGGACTAAAAATATATTATTTATTAATTTATTTCTTTTAT
Found at i:8334530 original size:21 final size:22
Alignment explanation
Indices: 8334504--8334549 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 22
8334494 CTTTTTTTTT
8334504 TCTTTCAAATTTTTTC-CT-TCC
1 TCTTTC-AATTTTTTCTCTCTCC
*
8334525 TCTTTCTATTTTTTCTCTCTCC
1 TCTTTCAATTTTTTCTCTCTCC
8334547 TCT
1 TCT
8334550 AGAATTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 8 0.36
22 6 0.27
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (22 bp):
TCTTTCAATTTTTTCTCTCTCC
Found at i:8335590 original size:33 final size:33
Alignment explanation
Indices: 8335553--8335618 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
8335543 GGTCTACGTT
*
8335553 GAAATCTGAAAA-TAGAATGACCTAGA-TTGAACC
1 GAAATATGAAAATTA-AATGACCTA-ATTTGAACC
8335586 GAAATATGAAAATTAAATGACCTAATTTGAACC
1 GAAATATGAAAATTAAATGACCTAATTTGAACC
8335619 AAAGTTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 1 0.03
33 27 0.90
34 2 0.07
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (33 bp):
GAAATATGAAAATTAAATGACCTAATTTGAACC
Found at i:8335754 original size:33 final size:33
Alignment explanation
Indices: 8335717--8335784 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
8335707 GTTCGAGCAA
8335717 AAATC-TAAAAATAGAACGACC-TAGATTGAATCG
1 AAATCTTAAAAATA-AACG-CCTTAGATTGAATCG
* *
8335750 AAATCTTAAAATTAAATGCCTTAGATTGAATCG
1 AAATCTTAAAAATAAACGCCTTAGATTGAATCG
8335783 AA
1 AA
8335785 GTGTAAGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 2 0.06
33 22 0.71
34 7 0.23
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.26
Consensus pattern (33 bp):
AAATCTTAAAAATAAACGCCTTAGATTGAATCG
Found at i:8335800 original size:33 final size:33
Alignment explanation
Indices: 8335738--8335800 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
8335728 TAGAACGACC
* *
8335738 TAGATTGAATCGAAATCTTAAAATTAAATGCCT
1 TAGATTGAATCGAAATCGTAAAATGAAATGCCT
*
8335771 TAGATTGAATCGAAGT-GTAAGAATGAAATG
1 TAGATTGAATCGAAATCGTAA-AATGAAATG
8335801 ACTTGGACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 3 0.12
33 23 0.88
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (33 bp):
TAGATTGAATCGAAATCGTAAAATGAAATGCCT
Found at i:8335812 original size:164 final size:162
Alignment explanation
Indices: 8335459--8335878 Score: 452
Period size: 164 Copynumber: 2.6 Consensus size: 162
8335449 AGTTTGAGTC
** * * * *
8335459 TGTAAAAAAAAATGACTTGGACTAAGCTTACGTTTGAGAATAAACAATTCGAACTAAGCTAAAAT
1 TGTAAAATGAAATGACTTGGACTAAGCCTAAGTCTGAGAATAAACAATT-GAACTAAGCTAAAGT
* * * * *** * *
8335524 TTAAAAATAAAAATGACTTGG-TCTACGTTGAAATCTGAAAATAGAATGACCTAGATTGAACCGA
65 TTGAAAAT-AAAACGATTTGGTTCGA-GCAAAAATCTAAAAATAGAACGACCTAGATTGAACCGA
8335588 AATATGAAAATTAAATGACCTAATTTGAACCAAAG
128 AATATGAAAATTAAATGACCTAATTTGAACCAAAG
* * * * * *
8335623 TTTTAAATGTAATAACCTT-GACTAAGCCTGAGTCTGAGAATAAACAACTTGAACTAAGTTAAAG
1 TGTAAAATGAAATGA-CTTGGACTAAGCCTAAGTCTGAGAATAAACAA-TTGAACTAAGCTAAAG
* *
8335687 TTTGAAAATAAAAGGATTTGGTTCGAGCAAAAATCTAAAAATAGAACGACCTAGATTGAATCGAA
64 TTTGAAAATAAAACGATTTGGTTCGAGCAAAAATCTAAAAATAGAACGACCTAGATTGAACCGAA
* * * *
8335752 ATCTTAAAATTAAATG-CCTTAGA-TTGAATCGAAG
129 ATATGAAAATTAAATGACC-TA-ATTTGAACCAAAG
* *
8335786 TGTAAGAATGAAATGACTTGGACTAAGCCTAAATCTGAGAATAAATAATATGAACTAAGCTAAAG
1 TGTAA-AATGAAATGACTTGGACTAAGCCTAAGTCTGAGAATAAACAAT-TGAACTAAGCTAAAG
* *
8335851 TTTGGAAATAAAACGATTTGGTTTGAGC
64 TTTGAAAATAAAACGATTTGGTTCGAGC
8335879 CAATGTTCGA
Statistics
Matches: 211, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
162 2 0.01
163 75 0.36
164 129 0.61
165 5 0.02
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (162 bp):
TGTAAAATGAAATGACTTGGACTAAGCCTAAGTCTGAGAATAAACAATTGAACTAAGCTAAAGTT
TGAAAATAAAACGATTTGGTTCGAGCAAAAATCTAAAAATAGAACGACCTAGATTGAACCGAAAT
ATGAAAATTAAATGACCTAATTTGAACCAAAG
Found at i:8336832 original size:11 final size:11
Alignment explanation
Indices: 8336816--8336849 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8336806 GATTTGAACC
8336816 TTTCTTTTTTT
1 TTTCTTTTTTT
8336827 TTTCTTTTTTT
1 TTTCTTTTTTT
*
8336838 TGTCCTTTTTTT
1 T-TTCTTTTTTT
8336850 ATTTTTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:8343255 original size:67 final size:67
Alignment explanation
Indices: 8343139--8343275 Score: 186
Period size: 67 Copynumber: 2.0 Consensus size: 67
8343129 CTAATTATAC
* * *
8343139 GTACCACCTAGCAGCAAAGCTTATAAGTCTATTTGAAAACATATCTATTAGCAACTT-TTCATCA
1 GTACCACCTAACAGCAAAGCCTATAAGGCTATTTGAAAACATATCTATTAGCAACTTCTT-ATCA
8343203 TGA
65 TGA
* * * * *
8343206 GTACCATCTAACAGCGAAGCCTATAAGGCTATTTTAAAATATATTTATTAGCAACTTCTTATCAT
1 GTACCACCTAACAGCAAAGCCTATAAGGCTATTTGAAAACATATCTATTAGCAACTTCTTATCAT
8343271 GA
66 GA
8343273 GTA
1 GTA
8343276 TAGATAGCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 59 0.97
68 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (67 bp):
GTACCACCTAACAGCAAAGCCTATAAGGCTATTTGAAAACATATCTATTAGCAACTTCTTATCAT
GA
Found at i:8353346 original size:21 final size:21
Alignment explanation
Indices: 8353311--8353355 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8353301 GTTGTTGAGC
* *
8353311 TGATTTTTCTTTTAATTTTTG
1 TGATTTTTCTTTTAAATCTTG
8353332 TGATTTTT-TTGTTAAATCTTG
1 TGATTTTTCTT-TTAAATCTTG
8353353 TGA
1 TGA
8353356 AAAAACTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.18, C:0.04, G:0.13, T:0.64
Consensus pattern (21 bp):
TGATTTTTCTTTTAAATCTTG
Found at i:8357688 original size:30 final size:29
Alignment explanation
Indices: 8357648--8357728 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
8357638 TTAATTTTAA
*
8357648 TTAAAAATAAATATAAATATTTTAAACATT
1 TTAATAATAAATATAAATATTTT-AACATT
* * * **
8357678 TTAATAATAAATATTATTATATTATGATT
1 TTAATAATAAATATAAATATTTTAACATT
8357707 TTAATAATAAATAATAAATATT
1 TTAATAATAAAT-ATAAATATT
8357729 AATATAATAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 16 0.39
30 25 0.61
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
TTAATAATAAATATAAATATTTTAACATT
Found at i:8357721 original size:7 final size:7
Alignment explanation
Indices: 8357709--8357743 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
8357699 TTATGATTTT
8357709 AATAATA
1 AATAATA
8357716 AATAATA
1 AATAATA
*
8357723 AATATTA
1 AATAATA
8357730 ATATAATA
1 A-ATAATA
8357738 AATAAT
1 AATAAT
8357744 GTTCTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (7 bp):
AATAATA
Found at i:8357772 original size:18 final size:18
Alignment explanation
Indices: 8357749--8357806 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 18
8357739 ATAATGTTCT
*
8357749 TATTATTTTAATAAGAAA
1 TATTATTTTAATAACAAA
*
8357767 TATTATTTAAGATAACAATA
1 TATTATTTTA-ATAACAA-A
* *
8357787 TTTTCATTTTAATAATAAA
1 TATT-ATTTTAATAACAAA
8357806 T
1 T
8357807 TTTGATAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.28
19 8 0.25
20 10 0.31
21 5 0.16
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TATTATTTTAATAACAAA
Found at i:8357888 original size:21 final size:20
Alignment explanation
Indices: 8357848--8357889 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
8357838 TTTATATTAT
8357848 TTTTAATATTTTAATTAAAAA
1 TTTTAATATTTT-ATTAAAAA
8357869 TTTTAATATTATT-TTAAAAA
1 TTTTAATATT-TTATTAAAAA
8357889 T
1 T
8357890 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 10 0.50
22 2 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTAATATTTTATTAAAAA
Found at i:8360149 original size:35 final size:36
Alignment explanation
Indices: 8360110--8360200 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 36
8360100 AAATAATTTA
* * *
8360110 AATAAAATAAATTATA-TTTAAATCAACTGCTTATC
1 AATAATATAAATTATATTTTAAATCAACTACATATC
8360145 AATAATATAAATTATTCATATTTTTAAATCAACTACATATC
1 AATAATAT-AA--ATT-ATA-TTTTAAATCAACTACATATC
8360186 AATAATATAAATTAT
1 AATAATATAAATTAT
8360201 TCATATTAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
35 7 0.15
36 2 0.04
37 2 0.04
38 6 0.13
39 3 0.06
40 2 0.04
41 25 0.53
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.40
Consensus pattern (36 bp):
AATAATATAAATTATATTTTAAATCAACTACATATC
Found at i:8360177 original size:41 final size:41
Alignment explanation
Indices: 8360126--8360207 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
8360116 ATAAATTATA
* *
8360126 TTTAAATCAACTGCTTATCAATAATATAAATTATTCATATT
1 TTTAAATCAACTACATATCAATAATATAAATTATTCATATT
8360167 TTTAAATCAACTACATATCAATAATATAAATTATTCATATT
1 TTTAAATCAACTACATATCAATAATATAAATTATTCATATT
8360208 AGTCAATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (41 bp):
TTTAAATCAACTACATATCAATAATATAAATTATTCATATT
Found at i:8360345 original size:24 final size:25
Alignment explanation
Indices: 8360290--8360345 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
8360280 AATTTTCAAT
* *
8360290 ATAAA-ATATTATACTATTTTAATA
1 ATAAATATATTATAATAATTTAATA
* *
8360314 GTATATATATT-TAATAATTTAATA
1 ATAAATATATTATAATAATTTAATA
8360338 ATAAATAT
1 ATAAATAT
8360346 TACATTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
ATAAATATATTATAATAATTTAATA
Found at i:8360497 original size:7 final size:7
Alignment explanation
Indices: 8360485--8360539 Score: 51
Period size: 7 Copynumber: 7.6 Consensus size: 7
8360475 ATAATATTTT
8360485 AATATTA
1 AATATTA
8360492 AATATTA
1 AATATTA
*
8360499 TAATTAATA
1 -AA-TATTA
8360508 AATATTA
1 AATATTA
8360515 AA-ATTAA
1 AATATT-A
8360522 AATATT-
1 AATATTA
8360528 AATAATTA
1 AAT-ATTA
8360536 AATA
1 AATA
8360540 ATGAATTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
6 6 0.15
7 20 0.50
8 10 0.25
9 4 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AATATTA
Found at i:8360505 original size:19 final size:19
Alignment explanation
Indices: 8360464--8360507 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8360454 TTTTCAGTAT
*
8360464 TTAATATTAATATAATATT
1 TTAATATTAATATAATATA
*
8360483 TTAATATTAA-ATATTATAA
1 TTAATATTAATATAATAT-A
8360502 TTAATA
1 TTAATA
8360508 AATATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATATTAATATAATATA
Found at i:8360533 original size:31 final size:32
Alignment explanation
Indices: 8360464--8360541 Score: 94
Period size: 31 Copynumber: 2.5 Consensus size: 32
8360454 TTTTCAGTAT
*
8360464 TTAAT-ATTAATATAATATTTTAATATTAAATA
1 TTAATAATTAATATAATA-TTTAAAATTAAATA
8360496 TT-ATAATTAATA-AATA-TTAAAATTAAAATA
1 TTAATAATTAATATAATATTTAAAATT-AAATA
8360526 TTAATAATTAA-ATAAT
1 TTAATAATTAATATAAT
8360542 GAATTATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
29 7 0.17
30 8 0.20
31 17 0.41
32 9 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (32 bp):
TTAATAATTAATATAATATTTAAAATTAAATA
Found at i:8360884 original size:82 final size:82
Alignment explanation
Indices: 8360756--8360921 Score: 332
Period size: 82 Copynumber: 2.0 Consensus size: 82
8360746 CGACCTAAAA
8360756 TTGCCGACGGTTCACATAATCGCACCCTTTCCCTCGCGCCAAAAAAACGCAACCTGGATTCCATT
1 TTGCCGACGGTTCACATAATCGCACCCTTTCCCTCGCGCCAAAAAAACGCAACCTGGATTCCATT
8360821 TCCCTGCTAACAATTTG
66 TCCCTGCTAACAATTTG
8360838 TTGCCGACGGTTCACATAATCGCACCCTTTCCCTCGCGCCAAAAAAACGCAACCTGGATTCCATT
1 TTGCCGACGGTTCACATAATCGCACCCTTTCCCTCGCGCCAAAAAAACGCAACCTGGATTCCATT
8360903 TCCCTGCTAACAATTTG
66 TCCCTGCTAACAATTTG
8360920 TT
1 TT
8360922 TCTAGTTAGG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (82 bp):
TTGCCGACGGTTCACATAATCGCACCCTTTCCCTCGCGCCAAAAAAACGCAACCTGGATTCCATT
TCCCTGCTAACAATTTG
Found at i:8364481 original size:12 final size:12
Alignment explanation
Indices: 8364464--8364488 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8364454 CAAGTGTGTA
8364464 TCCTTTATATGT
1 TCCTTTATATGT
8364476 TCCTTTATATGT
1 TCCTTTATATGT
8364488 T
1 T
8364489 TGATTACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (12 bp):
TCCTTTATATGT
Found at i:8364542 original size:2 final size:2
Alignment explanation
Indices: 8364535--8364561 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8364525 TGGTAACATG
8364535 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
8364562 CAGTTTACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Done.