Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 70 of 120
Found at i:8368707 original size:25 final size:25
Alignment explanation
Indices: 8368651--8368704 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
8368641 TGTAGAAATC
* *
8368651 TGATTCTCTTACATTAGTGCAGATT
1 TGATTCTCCTACATTAGTGCAGACT
*
8368676 TGATTCTCCTACATTAGTGTAG-CT
1 TGATTCTCCTACATTAGTGCAGACT
8368700 TGATT
1 TGATT
8368705 TCTTAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (25 bp):
TGATTCTCCTACATTAGTGCAGACT
Found at i:8372829 original size:16 final size:19
Alignment explanation
Indices: 8372800--8372836 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
8372790 TCATTTACTC
8372800 TTTTGATTTAGTCAA-TTT
1 TTTTGATTTAGTCAAGTTT
8372818 TTTTGA-TT-GTCAAGTTT
1 TTTTGATTTAGTCAAGTTT
8372835 TT
1 TT
8372837 AGGGATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.19, C:0.05, G:0.14, T:0.62
Consensus pattern (19 bp):
TTTTGATTTAGTCAAGTTT
Found at i:8375588 original size:15 final size:15
Alignment explanation
Indices: 8375570--8375600 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8375560 GTGATTGTTA
8375570 AGGTTTAGATTCTTG
1 AGGTTTAGATTCTTG
8375585 AGGTTTAGATTCTTG
1 AGGTTTAGATTCTTG
8375600 A
1 A
8375601 CTTGCAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (15 bp):
AGGTTTAGATTCTTG
Found at i:8379950 original size:3 final size:3
Alignment explanation
Indices: 8379944--8379989 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
8379934 TCTTCTTTCT
*
8379944 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8379990 GCATAACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8380763 original size:14 final size:14
Alignment explanation
Indices: 8380744--8380771 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8380734 CGTTGGAAGG
8380744 AAGAATTAAGCCAA
1 AAGAATTAAGCCAA
8380758 AAGAATTAAGCCAA
1 AAGAATTAAGCCAA
8380772 TACACGTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (14 bp):
AAGAATTAAGCCAA
Found at i:8381064 original size:14 final size:15
Alignment explanation
Indices: 8381045--8381073 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8381035 GATAAGAAAA
8381045 ATTTTATT-TTTTTT
1 ATTTTATTATTTTTT
8381059 ATTTTATTATTTTTT
1 ATTTTATTATTTTTT
8381074 TTAAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTATTATTTTTT
Found at i:8381289 original size:25 final size:24
Alignment explanation
Indices: 8381261--8381308 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8381251 GGCCAAATCT
*
8381261 CTTTTCTTGGTGAGGTTTTCTTTTC
1 CTTTTCAT-GTGAGGTTTTCTTTTC
* *
8381286 CTTTTCATGTTAGGTTTTTTTTT
1 CTTTTCATGTGAGGTTTTCTTTT
8381309 TCCTCCTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.06, C:0.12, G:0.17, T:0.65
Consensus pattern (24 bp):
CTTTTCATGTGAGGTTTTCTTTTC
Found at i:8381344 original size:27 final size:27
Alignment explanation
Indices: 8381314--8381384 Score: 142
Period size: 27 Copynumber: 2.6 Consensus size: 27
8381304 TTTTTTCCTC
8381314 CTTTCTTTATTTTTTTTAAAGAACTCT
1 CTTTCTTTATTTTTTTTAAAGAACTCT
8381341 CTTTCTTTATTTTTTTTAAAGAACTCT
1 CTTTCTTTATTTTTTTTAAAGAACTCT
8381368 CTTTCTTTATTTTTTTT
1 CTTTCTTTATTTTTTTT
8381385 TTCAGCTCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.18, C:0.14, G:0.03, T:0.65
Consensus pattern (27 bp):
CTTTCTTTATTTTTTTTAAAGAACTCT
Found at i:8388843 original size:20 final size:20
Alignment explanation
Indices: 8388820--8388861 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8388810 AAAGAAATTG
*
8388820 AAATTGGAAATAGAAAATGA
1 AAATTGGAAATAAAAAATGA
8388840 AAATTGGAAATAAAAAATGA
1 AAATTGGAAATAAAAAATGA
8388860 AA
1 AA
8388862 CCAAAATTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (20 bp):
AAATTGGAAATAAAAAATGA
Found at i:8393476 original size:22 final size:22
Alignment explanation
Indices: 8393428--8393477 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
8393418 TGAAGCAAAA
**
8393428 AAAAAATGATGAAAAATAGATT
1 AAAAAATGATGAAAAATAGAAG
*
8393450 AAAAAATTATGAAAAA-AGAAG
1 AAAAAATGATGAAAAATAGAAG
8393471 ATAAAAA
1 A-AAAAA
8393478 AAGAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (22 bp):
AAAAAATGATGAAAAATAGAAG
Found at i:8403330 original size:14 final size:14
Alignment explanation
Indices: 8403311--8403338 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8403301 AAGGTCTAAT
8403311 TTATTAGTAAATTA
1 TTATTAGTAAATTA
8403325 TTATTAGTAAATTA
1 TTATTAGTAAATTA
8403339 GACAGATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TTATTAGTAAATTA
Found at i:8405477 original size:34 final size:34
Alignment explanation
Indices: 8405429--8405496 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
8405419 ACAATTATTG
*
8405429 GGAAATAGTAGTATTACTTTTCCTCTTTATCATT
1 GGAAATAGTAGTATTACTTCTCCTCTTTATCATT
* *
8405463 GGAAATAGTGGTATTTCTTCTCCTCTTTATCATT
1 GGAAATAGTAGTATTACTTCTCCTCTTTATCATT
8405497 TTACCTATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47
Consensus pattern (34 bp):
GGAAATAGTAGTATTACTTCTCCTCTTTATCATT
Found at i:8405940 original size:31 final size:31
Alignment explanation
Indices: 8405905--8405963 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8405895 ATAAATCGGG
*
8405905 TGATGATGTTTTATTAATAAAATAAATTAAA
1 TGATGATATTTTATTAATAAAATAAATTAAA
* *
8405936 TGATGTTATTTTATTAATAAATTAAATT
1 TGATGATATTTTATTAATAAAATAAATT
8405964 TTTTAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.47
Consensus pattern (31 bp):
TGATGATATTTTATTAATAAAATAAATTAAA
Found at i:8410478 original size:19 final size:18
Alignment explanation
Indices: 8410467--8410515 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
8410457 ATTTTTTTAT
8410467 TTTATCATTATTGTTGTA
1 TTTATCATTATTGTTGTA
* * *
8410485 TTTATCTTTATTATATATA
1 TTTATCATTATTGT-TGTA
*
8410504 TTTATCTTTATT
1 TTTATCATTATT
8410516 CTTTATCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTATCATTATTGTTGTA
Found at i:8410520 original size:13 final size:13
Alignment explanation
Indices: 8410502--8410635 Score: 75
Period size: 13 Copynumber: 10.1 Consensus size: 13
8410492 TTATTATATA
8410502 TATTTATCTTTAT
1 TATTTATCTTTAT
*
8410515 TCTTTATC-TTATT
1 TATTTATCTTTA-T
8410528 TATTTATC-TTAT
1 TATTTATCTTTAT
* *
8410540 TA--TATATATA-
1 TATTTATCTTTAT
8410550 TATTTATCTTTAT
1 TATTTATCTTTAT
*
8410563 TCTTTATC-TTATT
1 TATTTATCTTTA-T
*
8410576 TATTTATCTTTCTT
1 TATTTATCTTT-AT
*
8410590 TATTTTTATCTCCTTTT
1 TA--TTTATCT--TTAT
8410607 ATATTTATCTCCTT-T
1 -TATTTATCT--TTAT
8410622 TATTTATCTTTAT
1 TATTTATCTTTAT
8410635 T
1 T
8410636 TATTGTTTTT
Statistics
Matches: 98, Mismatches: 9, Indels: 28
0.73 0.07 0.21
Matches are distributed among these distances:
10 5 0.05
11 2 0.02
12 17 0.17
13 35 0.36
14 14 0.14
15 1 0.01
16 18 0.18
17 2 0.02
18 4 0.04
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTTATCTTTAT
Found at i:8410530 original size:22 final size:22
Alignment explanation
Indices: 8410502--8410578 Score: 82
Period size: 22 Copynumber: 3.3 Consensus size: 22
8410492 TTATTATATA
8410502 TATTTATCTTTATTCTTTATCT
1 TATTTATCTTTATTCTTTATCT
* * * *
8410524 TATTTATTTATCTTATTATATATAT
1 TATTTA--TCT-TTATTCTTTATCT
8410549 ATATTTATCTTTATTCTTTATCT
1 -TATTTATCTTTATTCTTTATCT
8410572 TATTTAT
1 TATTTAT
8410579 TTATCTTTCT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
22 13 0.30
23 10 0.23
24 4 0.09
25 10 0.23
26 6 0.14
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTTATCTTTATTCTTTATCT
Found at i:8410531 original size:26 final size:24
Alignment explanation
Indices: 8410485--8410594 Score: 111
Period size: 26 Copynumber: 4.5 Consensus size: 24
8410475 TATTGTTGTA
8410485 TTTATCTTTATTATATATATTTATC
1 TTTATCTTTATT-TATATATTTATC
*
8410510 TTTATTCTTTATCTTATTTATTTATC
1 TTTA-TCTTTAT-TTATATATTTATC
* *
8410536 -TTAT-TATATATATATATTTATC
1 TTTATCTTTATTTATATATTTATC
*
8410558 TTTATTCTTTATCTTATTTATTTATC
1 TTTA-TCTTTAT-TTATATATTTATC
8410584 -TT-TCTTTATTT
1 TTTATCTTTATTT
8410595 TTATCTCCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
22 13 0.18
23 14 0.19
24 2 0.03
25 13 0.18
26 29 0.40
27 1 0.01
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTATCTTTATTTATATATTTATC
Found at i:8410551 original size:48 final size:46
Alignment explanation
Indices: 8410483--8410586 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 46
8410473 ATTATTGTTG
8410483 TATTTATC-TTTATTATATATATTTATCTTTATTCTTTATCTTATT
1 TATTTATCTTTTATTATATATATTTATCTTTATTCTTTATCTTATT
8410528 TATTTATCTTATTATATATATATATTTATCTTTATTCTTTATCTTATT
1 TATTTATCTT-TTAT-TATATATATTTATCTTTATTCTTTATCTTATT
8410576 TATTTATCTTT
1 TATTTATCTTT
8410587 CTTTATTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
45 8 0.14
46 1 0.02
47 5 0.09
48 42 0.75
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (46 bp):
TATTTATCTTTTATTATATATATTTATCTTTATTCTTTATCTTATT
Found at i:8410597 original size:16 final size:15
Alignment explanation
Indices: 8410508--8410631 Score: 60
Period size: 16 Copynumber: 8.1 Consensus size: 15
8410498 TATATATTTA
8410508 TCTTTATTCTTTATCT
1 TCTTTATT-TTTATCT
*
8410524 TATTTA--TTTATCT
1 TCTTTATTTTTATCT
* * *
8410537 TATTATATATATATATTT
1 TCTT-TAT-T-TTTATCT
8410555 ATCTTTATTCTTTATCT
1 -TCTTTATT-TTTATCT
*
8410572 TATTTA--TTTATCTT
1 TCTTTATTTTTATC-T
8410586 TCTTTATTTTTATCT
1 TCTTTATTTTTATCT
* *
8410601 CCTTTTATATTTATCT
1 TC-TTTATTTTTATCT
* *
8410617 CCTTT-TATTTATCT
1 TCTTTATTTTTATCT
8410631 T
1 T
8410632 TATTTATTGT
Statistics
Matches: 86, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
13 17 0.20
14 17 0.20
15 5 0.06
16 30 0.35
17 6 0.07
18 8 0.09
19 3 0.03
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTTATTTTTATCT
Found at i:8411931 original size:160 final size:158
Alignment explanation
Indices: 8411664--8412058 Score: 345
Period size: 160 Copynumber: 2.5 Consensus size: 158
8411654 AACATTTGTT
* * * * ** *
8411664 AGTATAGACTTGTATGTTTTAATTTTTCTTG-CCTATATCGATGGTTAATGGTCGTTAGTATAGA
1 AGTATAGACTTATATGTTTTAATTTTT-TTGACCTATACCGACGATTAA-ACT-GTCAGTATAGA
*** ** *
8411728 CTTGTAATGTTTTTTACCTATATTGACGGTTAAAACTCGTTAGTATA-AATTTTTTTGTTTTAAG
63 CTTGTAATGTTTTTTACCTATACCAACACTTAAAACTCGTTAGTATAGAATTATTTT-TTTTAA-
* * *
8411792 T-TTCTTACCTATACCGATAGCTA-ATGCTTATC
126 TAATCTTACCTATACCGACAGCTAGA-GATTATC
8411824 AGTATAGACTTATATGTTTTAATTTTTTTGACCTATACCGACGATTAACACCTGTCAGTATAGAC
1 AGTATAGACTTATATGTTTTAATTTTTTTGACCTATACCGACGATTAA-A-CTGTCAGTATAGAC
* * ** *
8411889 TTGTAATTTTTTTTATCTATACCAACACTTAGCA-TCCGTTAGTATAGACTTATTTTTTTTAATA
64 TTGTAATGTTTTTTACCTATACCAACACTTAAAACT-CGTTAGTATAGAATTATTTTTTTTAATA
* * * *
8411953 ATCTTACCTATATCGACGGTTAGAGATTGTC
128 ATCTTACCTATACCGACAGCTAGAGATTATC
* ** * * * *
8411984 AGTATAGAATTATATACTTTAATTTTCTT-ACCTTTACCAACGATTAGAGATTGTCAGTATAGAC
1 AGTATAGACTTATATGTTTTAATTTTTTTGACCTATACCGACGATTA-A-ACTGTCAGTATAGAC
*
8412048 TTAT-ATGTTTT
64 TTGTAATGTTTT
8412059 AATTTTTTTA
Statistics
Matches: 192, Mismatches: 36, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
158 6 0.03
159 36 0.19
160 141 0.73
161 9 0.05
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (158 bp):
AGTATAGACTTATATGTTTTAATTTTTTTGACCTATACCGACGATTAAACTGTCAGTATAGACTT
GTAATGTTTTTTACCTATACCAACACTTAAAACTCGTTAGTATAGAATTATTTTTTTTAATAATC
TTACCTATACCGACAGCTAGAGATTATC
Found at i:8412060 original size:55 final size:55
Alignment explanation
Indices: 8411929--8412064 Score: 173
Period size: 55 Copynumber: 2.5 Consensus size: 55
8411919 AGCATCCGTT
* * ** * * *
8411929 AGTATAGACTTATTTTTTTTAATAATCTTACCTATATCGACGGTTAGAGATTGTC
1 AGTATAGACTTATATATTTTAATTTTCTTACCTATACCAACGATTAGAGATTGTC
* * *
8411984 AGTATAGAATTATATACTTTAATTTTCTTACCTTTACCAACGATTAGAGATTGTC
1 AGTATAGACTTATATATTTTAATTTTCTTACCTATACCAACGATTAGAGATTGTC
*
8412039 AGTATAGACTTATATGTTTTAATTTT
1 AGTATAGACTTATATATTTTAATTTT
8412065 TTTATTATAT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (55 bp):
AGTATAGACTTATATATTTTAATTTTCTTACCTATACCAACGATTAGAGATTGTC
Found at i:8412352 original size:15 final size:15
Alignment explanation
Indices: 8412332--8412369 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8412322 TGTACCAAGT
8412332 TTGATAAAACAAACA
1 TTGATAAAACAAACA
*
8412347 TTGATAAAATAAACA
1 TTGATAAAACAAACA
*
8412362 TAGATAAA
1 TTGATAAA
8412370 GAGTTAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.24
Consensus pattern (15 bp):
TTGATAAAACAAACA
Found at i:8414516 original size:436 final size:431
Alignment explanation
Indices: 8413651--8414518 Score: 1326
Period size: 436 Copynumber: 2.0 Consensus size: 431
8413641 TGTTAGTAAC
* **
8413651 AGTATTCAAGATATCCATATTTTCATTAGGAAATTATCTTTTAAATACTAATAGTACTTAAAGTT
1 AGTATTCAAGATATCCATATTCTCATTAAAAAATTATCTTTTAAATACTAATAGTACTTAAAGTT
* * * * * * *
8413716 TCTTTTAAGTCTTTAATTTCAACCTTCAACTCTTGTACCTCTTTTTTATACTGAACCAATTTAGA
66 TCTTTTAAGTCTTTAATTTCAACCTTCAAATATTATACCTCTTTCTTATACTAAACCAAGTCAGA
*
8413781 AGATGAAAGACCATATTGTTTAGATGAAGTAGATATTGTACCCATGCAATGAACATACTCTTTTC
131 AGATGAAAGACCATATTGTTTAGATGAAGTAGATACTGTACCCATGCAATGAACATACTCTTTTC
* * *
8413846 TCTTCGATTTTTTAACTTTTGAATAAACATCATCTTTTCATGAACTCCTTTAACAATTCTGAGCA
196 TCTTCGATCTTTTAACTTTTGAATAAACATCATCTTTCCATGAACTCCTTTAACAATTCTAAGCA
* *
8413911 ATAGTTTCACTCAAATCTTGTTTCAAGAGTTTCTAAAATTGTAAACAAATATTTTAGTATAAAGA
261 ATAGTTTCACTCAAATCTTGTTTCAAGAGTTCCTAAAATTGTAAACAAATATTTTAGTATAAAAA
* * *
8413976 AACTAAACATAAGTAAAAGCAAGTAATAATTAAATTAAATACCATAATTTTTGCTACCTTATCAT
326 AACCAAACATAAGTAAAAGCAAGTAATAACTAAATTAAATACCATAATTTTAGCTACCTTATCAT
* * * **
8414041 TCATAATACTTTCATCTTTACGTATATGAGAAAGAATATAT
391 TCACAACACTTTCATCTTTACATATACAAGAAAGAATATAT
* *
8414082 AGTATTCAAGATATCCATATTCTCATTAAAAAATTATCTTTTAAGTATCGATAAGATGGTACTTA
1 AGTATTCAAGATATCCATATTCTCATTAAAAAATTATCTTTTAAATA-C--T-A-ATAGTACTTA
* *
8414147 AAGTTTCTTTTAAGTCTTTAATTTTAGCCTTCAAATATTATACCTCTTTCTTATACTAAACCAAG
61 AAGTTTCTTTTAAGTCTTTAATTTCAACCTTCAAATATTATACCTCTTTCTTATACTAAACCAAG
* *
8414212 TCAGAAGATGAAGGACCATATTGTTTAGATGAAGTAGATACTGTACCCATGCAATGAACATGCTC
126 TCAGAAGATGAAAGACCATATTGTTTAGATGAAGTAGATACTGTACCCATGCAATGAACATACTC
* *
8414277 TTTTCTCTTCGATCTTTTAACTTTTGAATAAACATCATCTTTCCATGAACTCTTTTCACAATTCT
191 TTTTCTCTTCGATCTTTTAACTTTTGAATAAACATCATCTTTCCATGAACTCCTTTAACAATTCT
* * *
8414342 AAGCACTAGTTTCACTCAAA-CTTTGTTTCATGAGTTCCTATAATTGTAAACAAATATTTTAGTA
256 AAGCAATAGTTTCACTCAAATC-TTGTTTCAAGAGTTCCTAAAATTGTAAACAAATATTTTAGTA
* *
8414406 TAAAAAAACCAAAGATAAGTAAAAGCAAGTAATAACTAAATTAAATACCATAATTTTAGCTGCCT
320 TAAAAAAACCAAACATAAGTAAAAGCAAGTAATAACTAAATTAAATACCATAATTTTAGCTACCT
8414471 TATCATTCACAACAC-TTCTATCTTTACATATACAAGAAAGAATATAT
385 TATCATTCACAACACTTTC-ATCTTTACATATACAAGAAAGAATATAT
8414518 A
1 A
8414519 TCTCAGCAGG
Statistics
Matches: 393, Mismatches: 37, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
431 43 0.11
432 1 0.00
434 1 0.00
435 5 0.01
436 343 0.87
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (431 bp):
AGTATTCAAGATATCCATATTCTCATTAAAAAATTATCTTTTAAATACTAATAGTACTTAAAGTT
TCTTTTAAGTCTTTAATTTCAACCTTCAAATATTATACCTCTTTCTTATACTAAACCAAGTCAGA
AGATGAAAGACCATATTGTTTAGATGAAGTAGATACTGTACCCATGCAATGAACATACTCTTTTC
TCTTCGATCTTTTAACTTTTGAATAAACATCATCTTTCCATGAACTCCTTTAACAATTCTAAGCA
ATAGTTTCACTCAAATCTTGTTTCAAGAGTTCCTAAAATTGTAAACAAATATTTTAGTATAAAAA
AACCAAACATAAGTAAAAGCAAGTAATAACTAAATTAAATACCATAATTTTAGCTACCTTATCAT
TCACAACACTTTCATCTTTACATATACAAGAAAGAATATAT
Found at i:8420945 original size:63 final size:63
Alignment explanation
Indices: 8420784--8420956 Score: 165
Period size: 63 Copynumber: 2.7 Consensus size: 63
8420774 AAAAACGTTT
* * ** *
8420784 TGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCACTTAGCAAATGCCT
1 TGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTATCAC-TAAAAAATGCCC
** * * * *
8420848 TGAATAATTTTCTT-ATA-AATGCT-TGAAGGGGATTATTCAAGGTGCTTATGA-TAAAAAATGC
1 TGAATAATTCCCTTCA-AGCAT-TTATG-AGGAGATTATTCAAGGTG-TTATCACTAAAAAATGC
8420909 CC
62 CC
*
8420911 TGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTT
1 TGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTT
8420957 TTTACCTAGA
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
62 2 0.02
63 44 0.52
64 35 0.41
65 4 0.05
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (63 bp):
TGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTATCACTAAAAAATGCCC
Found at i:8420986 original size:63 final size:63
Alignment explanation
Indices: 8420783--8420986 Score: 184
Period size: 64 Copynumber: 3.2 Consensus size: 63
8420773 TAAAAACGTT
* *
8420783 TTGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCACTTAGCAAATGCC
1 TTGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCAC-TAGAAAATGCC
** * * * * * *
8420847 TTGAATAATTTTCTT-ATA-AATGCT-TGAAGGGGATTATTCAAGGTGCTTATGA-TAAAAAATG
1 TTGAATAATTCCCTTCA-AGCAT-TTATG-AGGAGATTATTCAAGGTG-TTTTCACTAGAAAATG
8420908 CC
62 CC
* * * * *
8420910 CTGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTTTTTACCTAGAAAATACA
1 TTGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCA-CTAGAAAATGCC
8420974 TTGAATAA-TCCCT
1 TTGAATAATTCCCT
8420987 AATAAATTAT
Statistics
Matches: 108, Mismatches: 23, Indels: 19
0.72 0.15 0.13
Matches are distributed among these distances:
62 4 0.04
63 49 0.45
64 51 0.47
65 4 0.04
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (63 bp):
TTGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCACTAGAAAATGCC
Found at i:8421031 original size:127 final size:127
Alignment explanation
Indices: 8420784--8421016 Score: 317
Period size: 127 Copynumber: 1.8 Consensus size: 127
8420774 AAAAACGTTT
* * * * *
8420784 TGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTCAAGGTGTTTTCACTTAGCAAATGCCTT
1 TGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTTTTCACCTAGAAAATACATT
** * * * *
8420849 GAATAATTTTCTTATAAATGCTTGAAGGGGATTATTCAAGGTGCTTATGATAAAAAATGCCC
66 GAATAATTCCCTAATAAATGATTGAAAGGGATTATTAAAGGTGCTTATGATAAAAAATGCCC
* *
8420911 TGAATAATTCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTTTTTACCTAGAAAATACATT
1 TGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTTTTCACCTAGAAAATACATT
*
8420976 GAATAA-TCCCTAATAAATTATTGAATAGGG-TTATTAAAGGT
66 GAATAATTCCCTAATAAATGATTGAA-AGGGATTATTAAAGGT
8421017 TTTTTTGGCA
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
126 24 0.26
127 67 0.74
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (127 bp):
TGAATAATCCCCTTCAAGCATTTATGAGGAGATTATTAAAGGTGTTTTCACCTAGAAAATACATT
GAATAATTCCCTAATAAATGATTGAAAGGGATTATTAAAGGTGCTTATGATAAAAAATGCCC
Found at i:8421114 original size:57 final size:55
Alignment explanation
Indices: 8421021--8421133 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 55
8421011 AAAGGTTTTT
*
8421021 TTGGCAAAAAATATCTTCAATAATCCCTTCCAATTTTTTTGAGAGGATTATTCAAGG
1 TTGGCAAAAAATACCTTCAATAATCCCTTCCAATTTTTTT--GAGGATTATTCAAGG
* * * * * *
8421078 TTGGCCAAAAATGCCTTCAATTATCCTTTCCCATTTTTTTTAGGATTATTCAAGG
1 TTGGCAAAAAATACCTTCAATAATCCCTTCCAATTTTTTTGAGGATTATTCAAGG
8421133 T
1 T
8421134 GTTTTTGTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
55 15 0.31
57 34 0.69
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (55 bp):
TTGGCAAAAAATACCTTCAATAATCCCTTCCAATTTTTTTGAGGATTATTCAAGG
Found at i:8421206 original size:48 final size:48
Alignment explanation
Indices: 8421116--8421214 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 48
8421106 TCCCATTTTT
* * *
8421116 TTTAGGATTATTCAAGGTGTTTTTGTGATAAAACGCCGTGAATAATCC
1 TTTAGGATTAGTCAAGGTGTTTTAGTGAAAAAACGCCGTGAATAATCC
* * *
8421164 TTTAGGGTTAGTCAAGGTGTTTATAGT-AAAAAATGCCTTGAATAATCC
1 TTTAGGATTAGTCAAGGTGTTT-TAGTGAAAAAACGCCGTGAATAATCC
8421212 TTT
1 TTT
8421215 TCAAGCATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
48 41 0.93
49 3 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (48 bp):
TTTAGGATTAGTCAAGGTGTTTTAGTGAAAAAACGCCGTGAATAATCC
Found at i:8421292 original size:22 final size:22
Alignment explanation
Indices: 8421252--8421294 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
8421242 GGTTTTTTTG
8421252 CCTAAAAAATACCTTAAATAGTC
1 CCTAAAAAATA-CTTAAATAGTC
8421275 CCTAATAAAATA-TTAAATAG
1 CCTAA-AAAATACTTAAATAG
8421295 GGTTATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 5 0.26
24 6 0.32
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.28
Consensus pattern (22 bp):
CCTAAAAAATACTTAAATAGTC
Found at i:8423376 original size:20 final size:20
Alignment explanation
Indices: 8423351--8423400 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8423341 ATTTATAGCA
* *
8423351 TGTATGATTGGCTTTATACT
1 TGTATGATTGACTCTATACT
8423371 TGTATGCA-TGACTCTATACT
1 TGTATG-ATTGACTCTATACT
8423391 TGTATAGATT
1 TGTAT-GATT
8423401 TGTTGTAACG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (20 bp):
TGTATGATTGACTCTATACT
Found at i:8427973 original size:23 final size:22
Alignment explanation
Indices: 8427946--8427994 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
8427936 TCATTTTCCT
*
8427946 TATAATTTTATA-TATTTATTTGA
1 TATAATGTTATATTATTT-TTT-A
8427969 TATAATGTTATATTATTTTTTA
1 TATAATGTTATATTATTTTTTA
8427991 TATA
1 TATA
8427995 TACTTAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 14 0.58
24 5 0.21
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TATAATGTTATATTATTTTTTA
Found at i:8431415 original size:19 final size:21
Alignment explanation
Indices: 8431380--8431426 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
8431370 AATTTTTGTC
8431380 ACTATTAAACATAATGT-ATT
1 ACTATTAAACATAATGTCATT
8431400 ACTA-TAAAC-TATATGTCATT
1 ACTATTAAACATA-ATGTCATT
*
8431420 ACAATTA
1 ACTATTA
8431427 CAAATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.09
19 9 0.39
20 10 0.43
21 2 0.09
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (21 bp):
ACTATTAAACATAATGTCATT
Found at i:8432189 original size:24 final size:25
Alignment explanation
Indices: 8432139--8432194 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
8432129 TTTCAACATC
8432139 AAAATTTATAATCAATACAAAAATA
1 AAAATTTATAATCAATACAAAAATA
*
8432164 AAGATTTATAATCAATA-AAAAATA
1 AAAATTTATAATCAATACAAAAATA
8432188 AAAATTT
1 AAAATTT
8432195 TTGTACTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 13 0.45
25 16 0.55
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAATTTATAATCAATACAAAAATA
Found at i:8437253 original size:27 final size:27
Alignment explanation
Indices: 8437223--8437294 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
8437213 CAGCAAACCA
* ** *
8437223 AGGCCTATAGATAACAATCATATGCCT
1 AGGCCTACAGATAACAATCATACACCC
8437250 AGGCCTACAGATAACAATCATACACCC
1 AGGCCTACAGATAACAATCATACACCC
*
8437277 AGGCCTACAAATAACAAT
1 AGGCCTACAGATAACAAT
8437295 ATTCAAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.42, C:0.26, G:0.12, T:0.19
Consensus pattern (27 bp):
AGGCCTACAGATAACAATCATACACCC
Found at i:8438344 original size:18 final size:18
Alignment explanation
Indices: 8438321--8438357 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8438311 AGTCCATAGA
8438321 TTAATTGAATTAGTTGAT
1 TTAATTGAATTAGTTGAT
* *
8438339 TTAATTGATTTATTTGAT
1 TTAATTGAATTAGTTGAT
8438357 T
1 T
8438358 GCTATGATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.57
Consensus pattern (18 bp):
TTAATTGAATTAGTTGAT
Found at i:8443713 original size:14 final size:14
Alignment explanation
Indices: 8443694--8443721 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8443684 TTTGGCATAA
8443694 GCTTGAATATATGT
1 GCTTGAATATATGT
8443708 GCTTGAATATATGT
1 GCTTGAATATATGT
8443722 TTACATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
GCTTGAATATATGT
Found at i:8444483 original size:20 final size:20
Alignment explanation
Indices: 8444458--8444505 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
8444448 GCTTTTCTCA
8444458 AATTGATTTTCAAAATCATT
1 AATTGATTTTCAAAATCATT
8444478 AATTGATTTTCAAAATCATT
1 AATTGATTTTCAAAATCATT
8444498 AATTGATT
1 AATTGATT
8444506 AAGGGAGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (20 bp):
AATTGATTTTCAAAATCATT
Found at i:8445710 original size:17 final size:18
Alignment explanation
Indices: 8445690--8445731 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8445680 GTTTTATTTG
*
8445690 TTTATTTATGATT-TATT
1 TTTATTTATCATTATATT
* *
8445707 TTTATATATCTTTATATT
1 TTTATTTATCATTATATT
8445725 TTTATTT
1 TTTATTT
8445732 TTTCATTTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTATTTATCATTATATT
Found at i:8447894 original size:105 final size:104
Alignment explanation
Indices: 8447714--8447980 Score: 333
Period size: 105 Copynumber: 2.5 Consensus size: 104
8447704 TGAAAAAGGT
* *
8447714 TTATTTAGTATATA-TTCTTA-AATTATATTGTTTTTAGTACTAAATAAATACTAGATATATTTG
1 TTATTTAGTATATAGTTCTTATGATT-TATTG-TTTTGGTACTAAAT-AA-A-TA-ATATATTTG
*
8447777 AAAAGAAAAATATTTTGGAAAATGATTTTAGACTTTGAAAAACAA
60 AAAAAAAAAATATTTTGGAAAATGATTTTAGACTTTGAAAAACAA
* *
8447822 TTATTTAGCATATAGTTCTTATGATTTGTTGTGTTTGGTACTAAATAAATAATATATTT-AAAAT
1 TTATTTAGTATATAGTTCTTATGATTTATTGT-TTTGGTACTAAATAAATAATATATTTGAAAA-
* * * *
8447886 AAAAAATATTTTGGAAAATGATTTTGGGCTTTGAAAAAGAT
64 AAAAAATATTTTGGAAAATGATTTTAGACTTTGAAAAACAA
* * *
8447927 TTATTTAGTACATGGTTCTTATGATTTATTATTTTGGTACTAAATAAATAATAT
1 TTATTTAGTATATAGTTCTTATGATTTATTGTTTTGGTACTAAATAAATAATAT
8447981 TTGATTTGCT
Statistics
Matches: 141, Mismatches: 14, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
104 26 0.18
105 71 0.50
106 2 0.01
107 1 0.01
108 16 0.11
109 22 0.16
110 3 0.02
ACGTcount: A:0.39, C:0.04, G:0.12, T:0.44
Consensus pattern (104 bp):
TTATTTAGTATATAGTTCTTATGATTTATTGTTTTGGTACTAAATAAATAATATATTTGAAAAAA
AAAATATTTTGGAAAATGATTTTAGACTTTGAAAAACAA
Found at i:8449356 original size:18 final size:18
Alignment explanation
Indices: 8449329--8449364 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8449319 TTAGCACTTT
*
8449329 TGAATCTAATTATAAAAA
1 TGAATCTAATAATAAAAA
*
8449347 TGAATGTAATAATAAAAA
1 TGAATCTAATAATAAAAA
8449365 GAAATTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (18 bp):
TGAATCTAATAATAAAAA
Found at i:8454255 original size:3 final size:3
Alignment explanation
Indices: 8454242--8454386 Score: 129
Period size: 3 Copynumber: 53.0 Consensus size: 3
8454232 TAGTATGGTA
* * *
8454242 TAT TA- TAT TAT TAT TA- CAT TAT CA- TAT TA- TAT TAT TA- CAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
8454284 TAT TAT TA- TAT TAT TAT TGT TAT GAT TA- TAT TAT TA- TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
8454328 TA- TAG TA- TAT TAT TAT TAT TAC TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8454373 TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT
8454387 CATTTTTCCT
Statistics
Matches: 116, Mismatches: 12, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
2 25 0.22
3 91 0.78
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:8454255 original size:8 final size:8
Alignment explanation
Indices: 8454242--8454386 Score: 93
Period size: 8 Copynumber: 17.4 Consensus size: 8
8454232 TAGTATGGTA
8454242 TATTATAT
1 TATTATAT
8454250 TATTAT-T
1 TATTATAT
*
8454257 ACATTATCA-
1 -TATTAT-AT
8454266 TATTATAT
1 TATTATAT
*
8454274 TATTACAT
1 TATTATAT
8454282 TA-TATTAT
1 TATTA-TAT
8454290 TA-TATTAT
1 TATTA-TAT
*
8454298 TATTGTTAT
1 TATT-ATAT
*
8454307 GATTATAT
1 TATTATAT
8454315 TATTATATT
1 TATTATA-T
*
8454324 ATATTATAG
1 -TATTATAT
8454333 TA-TATTAT
1 TATTA-TAT
*
8454341 TATTATTAC
1 TATTA-TAT
8454350 TATTATAT
1 TATTATAT
8454358 TATTATTAT
1 TATTA-TAT
8454367 TATTATTAT
1 TATTA-TAT
*
8454376 TATTATTT
1 TATTATAT
8454384 TAT
1 TAT
8454387 CATTTTTCCT
Statistics
Matches: 112, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
7 6 0.05
8 64 0.57
9 35 0.31
10 7 0.06
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:8454306 original size:6 final size:6
Alignment explanation
Indices: 8454242--8454386 Score: 129
Period size: 5 Copynumber: 26.5 Consensus size: 6
8454232 TAGTATGGTA
* * *
8454242 TATTA- TATTAT TATTA- CATTAT CA-TAT TA-TAT TATTA- CATTA-
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
* *
8454284 TATTAT TA-TAT TATTAT TGTTAT GATTA- TATTAT TA-TAT TA-TAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
* *
8454328 TA-TAG TA-TAT TATTAT TATTAC TATTA- TATTAT TATTAT TATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
8454373 TATTAT TATT-T TAT
1 TATTAT TATTAT TAT
8454387 CATTTTTCCT
Statistics
Matches: 121, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
5 62 0.51
6 59 0.49
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (6 bp):
TATTAT
Found at i:8454313 original size:20 final size:20
Alignment explanation
Indices: 8454242--8454386 Score: 149
Period size: 20 Copynumber: 7.2 Consensus size: 20
8454232 TAGTATGGTA
8454242 TATTATATTATTATTACATTAT
1 TATTATATTATTATT--ATTAT
8454264 CATATTATATTATTACATTA-TAT
1 --TATTATATTATT--ATTATTAT
*
8454287 TATTATATTATTATTGTTAT
1 TATTATATTATTATTATTAT
*
8454307 GATTATATTATTA-TATTA-
1 TATTATATTATTATTATTAT
*
8454325 TATTATAGTA-TATTATTAT
1 TATTATATTATTATTATTAT
8454344 TATTACTATTA-TATTATTAT
1 TATTA-TATTATTATTATTAT
8454364 TATTATTATTATTATTATT-T
1 TATTA-TATTATTATTATTAT
8454384 TAT
1 TAT
8454387 CATTTTTCCT
Statistics
Matches: 107, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
17 2 0.02
18 13 0.12
19 12 0.11
20 42 0.39
21 19 0.18
23 3 0.03
24 13 0.12
26 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (20 bp):
TATTATATTATTATTATTAT
Found at i:8459957 original size:7 final size:6
Alignment explanation
Indices: 8459941--8460032 Score: 73
Period size: 6 Copynumber: 14.7 Consensus size: 6
8459931 GAGGTGTGTA
* *
8459941 AAAAAA AAAAAG CAAAAATG AAAAA- AAAAAC AAAAAG CAAAAATG AAAAA-
1 AAAAAG AAAAAG -AAAAA-G AAAAAG AAAAAG AAAAAG -AAAAA-G AAAAAG
*
8459991 AAAAAG CAAAAAAG AAAAA- AAAAGAG AAAAAA AAAAAG AAAA
1 AAAAAG --AAAAAG AAAAAG AAAA-AG AAAAAG AAAAAG AAAA
8460033 CTTAAACTAA
Statistics
Matches: 72, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
5 14 0.19
6 26 0.36
7 24 0.33
8 8 0.11
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:8459966 original size:18 final size:19
Alignment explanation
Indices: 8459961--8460032 Score: 87
Period size: 19 Copynumber: 3.8 Consensus size: 19
8459951 AGCAAAAATG
*
8459961 AAAAAA-AAAACAAAAAGC
1 AAAAAAGAAAAAAAAAAGC
*
8459979 AAAAATGAAAAAAAAAAGC
1 AAAAAAGAAAAAAAAAAGC
8459998 AAAAAAGAAAAAAAAAGAG-
1 AAAAAAGAAAAAAAAA-AGC
8460017 AAAAAA-AAAAAGAAAA
1 AAAAAAGAAAAA-AAAA
8460033 CTTAAACTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.21
19 36 0.75
20 2 0.04
ACGTcount: A:0.85, C:0.04, G:0.10, T:0.01
Consensus pattern (19 bp):
AAAAAAGAAAAAAAAAAGC
Found at i:8459966 original size:19 final size:19
Alignment explanation
Indices: 8459942--8460013 Score: 81
Period size: 19 Copynumber: 3.5 Consensus size: 19
8459932 AGGTGTGTAA
8459942 AAAAAAAAAAGCAAAAATG
1 AAAAAAAAAAGCAAAAATG
8459961 AAAAAAAAAACAAAAAGCAAAAATG
1 -----AAAAA-AAAAAGCAAAAATG
*
8459986 AAAAAAAAAAGCAAAAAAG
1 AAAAAAAAAAGCAAAAATG
8460005 AAAAAAAAA
1 AAAAAAAAA
8460014 GAGAAAAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
19 22 0.48
20 5 0.11
24 5 0.11
25 14 0.30
ACGTcount: A:0.83, C:0.06, G:0.08, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAGCAAAAATG
Found at i:8459968 original size:25 final size:24
Alignment explanation
Indices: 8459940--8460032 Score: 109
Period size: 25 Copynumber: 3.7 Consensus size: 24
8459930 AGAGGTGTGT
8459940 AAAAAAAAAAAAGCAAAAATGAAAA
1 AAAAAAAAAAAAG-AAAAATGAAAA
*
8459965 AAAAAACAAAAAGCAAAAATGAAAA
1 AAAAAAAAAAAAG-AAAAATGAAAA
8459990 AAAAAAGCAAAAAAGAAAAA--AAAA
1 AAAAAA--AAAAAAGAAAAATGAAAA
8460014 GAGAAAAAAAAAAAGAAAA
1 -A-AAAAAAAAAAAGAAAA
8460033 CTTAAACTAA
Statistics
Matches: 62, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
24 15 0.24
25 31 0.50
26 10 0.16
27 6 0.10
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAAGAAAAATGAAAA
Found at i:8459969 original size:12 final size:11
Alignment explanation
Indices: 8459940--8460032 Score: 68
Period size: 11 Copynumber: 8.4 Consensus size: 11
8459930 AGAGGTGTGT
8459940 AAAAAAAAAA-
1 AAAAAAAAAAG
** *
8459950 AAGCAAAAATG
1 AAAAAAAAAAG
*
8459961 AAAAAAAAAAC
1 AAAAAAAAAAG
8459972 AAAAAGCAAAAATG
1 AAAAA--AAAAA-G
8459986 AAAAAAAAAAG
1 AAAAAAAAAAG
*
8459997 ---CAAAAAAG
1 AAAAAAAAAAG
8460005 AAAAAAAAAGAG
1 AAAAAAAAA-AG
8460017 AAAAAAAAAAAG
1 -AAAAAAAAAAG
8460029 AAAA
1 AAAA
8460033 CTTAAACTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
8 7 0.11
10 7 0.11
11 22 0.34
12 9 0.14
13 14 0.22
14 5 0.08
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:8460027 original size:44 final size:43
Alignment explanation
Indices: 8459942--8460032 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 43
8459932 AGGTGTGTAA
* *
8459942 AAAAAAAAAAGCAAAAATGAAAAAAAAAACAAAAAGCAAAAATG
1 AAAAAAAAAAGCAAAAAAGAAAAAAAAAACAAAAAG-AAAAAAG
*
8459986 AAAAAAAAAAGCAAAAAAGAAAAAAAAAGAGAAAAA-AAAAAAG
1 AAAAAAAAAAGCAAAAAAGAAAAAAAAA-ACAAAAAGAAAAAAG
8460029 AAAA
1 AAAA
8460033 CTTAAACTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 10 0.23
44 27 0.63
45 6 0.14
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (43 bp):
AAAAAAAAAAGCAAAAAAGAAAAAAAAAACAAAAAGAAAAAAG
Found at i:8460045 original size:1 final size:1
Alignment explanation
Indices: 8459940--8460032 Score: 51
Period size: 1 Copynumber: 93.0 Consensus size: 1
8459930 AGAGGTGTGT
** ** * ** ** ** *
8459940 AAAAAAAAAAAAGCAAAAATGAAAAAAAAAACAAAAAGCAAAAATGAAAAAAAAAAGCAAAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
8460005 AAAAAAAAAGAGAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
8460033 CTTAAACTAA
Statistics
Matches: 67, Mismatches: 25, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (1 bp):
A
Found at i:8464385 original size:115 final size:115
Alignment explanation
Indices: 8464183--8464415 Score: 403
Period size: 115 Copynumber: 2.0 Consensus size: 115
8464173 GTTGGCCAAT
*
8464183 TTTTGTTGCCACAAAAATCTAATTATACAACCATGGAGAGTTTGCTTATTGAAAAGGAAGTCAAT
1 TTTTGGTGCCACAAAAATCTAATTATACAACCATGGAGAGTTTGCTTATTGAAAAGGAAGTCAAT
8464248 CATATATCAAAGATTTCGATACTAATTCACCTATTTTCCTTCTTAATGTC
66 CATATATCAAAGATTTCGATACTAATTCACCTATTTTCCTTCTTAATGTC
* * **
8464298 TTTTGGTGCCATAGAAATCTAATTATACAACCATGGAGAGTTTGCTTATTGAAAAGGAAGTTGAT
1 TTTTGGTGCCACAAAAATCTAATTATACAACCATGGAGAGTTTGCTTATTGAAAAGGAAGTCAAT
* *
8464363 CATATATCAAAGATTTTGATACTGATTCACCTATTTTCCTTCTTAATGTC
66 CATATATCAAAGATTTCGATACTAATTCACCTATTTTCCTTCTTAATGTC
8464413 TTT
1 TTT
8464416 AAAAATGAAT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (115 bp):
TTTTGGTGCCACAAAAATCTAATTATACAACCATGGAGAGTTTGCTTATTGAAAAGGAAGTCAAT
CATATATCAAAGATTTCGATACTAATTCACCTATTTTCCTTCTTAATGTC
Found at i:8466138 original size:23 final size:22
Alignment explanation
Indices: 8466094--8466139 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
8466084 ATTAAATTTC
*
8466094 AAATATAAAATTATAAATTAAT
1 AAATATAAAATCATAAATTAAT
8466116 AAATAATAAAATCA-AAATATAAT
1 AAAT-ATAAAATCATAAAT-TAAT
8466139 A
1 A
8466140 TTTAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATATAAAATCATAAATTAAT
Found at i:8466311 original size:16 final size:16
Alignment explanation
Indices: 8466290--8466322 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8466280 TTTATCAAAA
8466290 AAATTTTTAAAATTAT
1 AAATTTTTAAAATTAT
8466306 AAATTTTTAAAATTAT
1 AAATTTTTAAAATTAT
8466322 A
1 A
8466323 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTTTTAAAATTAT
Found at i:8466348 original size:612 final size:612
Alignment explanation
Indices: 8465133--8466352 Score: 1986
Period size: 612 Copynumber: 2.0 Consensus size: 612
8465123 TTTTCACGCA
* *
8465133 GTGGCATGCTTGTTATTTTGTATAAAAACAAAATAAACTTACATTTAGAAATATTAATGTTACTT
1 GTGGCATGCTTGTTATTTTGTATAAAAACAAAATAAACTTACATTCAGAAATATTAATATTACTT
* * *
8465198 ATTTCATCATTAAAAATTGAATCTACATTAAATTTTTAAATTTTTAGTTTTTAATCTTAAAAGTA
66 ATTCCATCATTAAAAATTGAATCTACATTAAATTTTTAAATTTTTAATTTTTAATCTTAAAAGCA
* * *
8465263 ATAGATCGTAAAACACTAAATTCATTAAGTAACTTAATCTTTTTGATACACTAATTGATGTAAAA
131 ATAGATCATAAAACACTAAATTCATTAAGTAACTTAATCTTTTTGATACACTAACTGATATAAAA
** * * * *
8465328 ATTTTTTTATCACGAATTACTTTCAATATATTATATAATAAATAGAATCTTTAATAATTACACAA
196 AAATTTTAATCACAAATTACTTTCAATATATTATATAATAAATAGAATATTCAATAATTACACAA
* * *
8465393 AAATAAAAATAAATTAATAAGAATTAATTTAATAGCAAAAGAATTGACAACAATATAAATACCAA
261 AAATAAAAATAAATTAATAAGAATTAATTGAAAAGCAAAAGAATTAACAACAATATAAATACCAA
*
8465458 AACAACAAAAAATTATTAAATTTCGATATAAAATTATAAATTAATAAATAACAAAATCAAAATAT
326 AACAACAAAAAATTATTAAATTTCAATATAAAATTATAAATTAATAAATAACAAAATCAAAATAT
*
8465523 AACATTTAATTTTAATTATTTTTCATCTAACTTATATAAAAAAATTTATTAAAATTTTTCATCTA
391 AACATTTAATTTTAATTATTTTTCATCTAACTTATAAAAAAAAATTTATTAAAATTTTTCATCTA
* *
8465588 AAATCCCTATATATATCATATTAAATTATTAATTTCGTAATTTTTTCAATTATAAAATCTCAATC
456 AAATCCCTATATATATCATATTAAATTATTAATCTCGTAATTTTTTCAATTATAAAATCCCAATC
*
8465653 TCTCTAACTAAATTTGATCTAAAAAAATTTTAAAAATTACAAATTTTTAAATTTATATTTTAATA
521 TCTCTAACTAAATTTGATCTAAAAAAATTTTAAAAATTACAAATTTTTAAAATTATATTTTAATA
8465718 AAATTAATTACAAAATTAAATAATGGG
586 AAATTAATTACAAAATTAAATAATGGG
* *
8465745 GTGGCATGCTTGCTT-TTTTGTATAAAAACAAAATAAACTTATATTCAGAAATATTAATATTATT
1 GTGGCATGCTTG-TTATTTTGTATAAAAACAAAATAAACTTACATTCAGAAATATTAATATTACT
*
8465809 TATTCCATCATTAAAAATTGAATCTACATTAAATTTTGT-AATTTTTAATTTTTAATCTTAAGAG
65 TATTCCATCATTAAAAATTGAATCTACATTAAATTTT-TAAATTTTTAATTTTTAATCTTAAAAG
** *
8465873 CAATAGATCATAAAACGTTAAATTTATTAAGTAACTTAATCTTTTTGATACACTAACTGATATAA
129 CAATAGATCATAAAACACTAAATTCATTAAGTAACTTAATCTTTTTGATACACTAACTGATATAA
8465938 AAAAATTTTAATCACAAATTACTTTCAATATATTATATAATAAATAGAATATTCAATAATTACAC
194 AAAAATTTTAATCACAAATTACTTTCAATATATTATATAATAAATAGAATATTCAATAATTACAC
*
8466003 AAAAATAAAAATAAATTAATAAGAATTAATTGAAAAGTAAAAG-ATTAACAACAATATAAATACC
259 AAAAATAAAAATAAATTAATAAGAATTAATTGAAAAGCAAAAGAATTAACAACAATATAAATACC
*
8466067 AAAACAACAAAAATATTATTAAATTTCAAATATAAAATTATAAATTAATAAATAATAAAATCAAA
324 AAAACAACAAAAA-ATTATTAAATTTC-AATATAAAATTATAAATTAATAAATAACAAAATCAAA
* *
8466132 ATATAATATTTAATTTTAATTATTTTTTATCTAACTTATAGAAAAAAAATTTTATTAAAATTTTT
387 ATATAACATTTAATTTTAATTATTTTTCATCTAACTTATA-AAAAAAAA-TTTATTAAAATTTTT
* *
8466197 CATCTAAAATCCCTATATATATTATATTAAATTATTAATCTC-TTATTCTTTT-AATTATAAAAT
450 CATCTAAAATCCCTATATATATCATATTAAATTATTAATCTCGTAATT-TTTTCAATTATAAAAT
* * *
8466260 CCCAATCTCTCTAACTAAATTTTATC-AAAAAAATTTTTAAAATTATAAATTTTTAAAATTATAT
514 CCCAATCTCTCTAACTAAATTTGATCTAAAAAAATTTTAAAAATTACAAATTTTTAAAATTATAT
*
8466324 TTTAATAAAATTAATTA-TAAATTAAATAA
579 TTTAATAAAATTAATTACAAAATTAAATAA
8466353 AAACTACCTA
Statistics
Matches: 563, Mismatches: 38, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
611 33 0.06
612 297 0.53
613 128 0.23
614 46 0.08
615 59 0.10
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (612 bp):
GTGGCATGCTTGTTATTTTGTATAAAAACAAAATAAACTTACATTCAGAAATATTAATATTACTT
ATTCCATCATTAAAAATTGAATCTACATTAAATTTTTAAATTTTTAATTTTTAATCTTAAAAGCA
ATAGATCATAAAACACTAAATTCATTAAGTAACTTAATCTTTTTGATACACTAACTGATATAAAA
AAATTTTAATCACAAATTACTTTCAATATATTATATAATAAATAGAATATTCAATAATTACACAA
AAATAAAAATAAATTAATAAGAATTAATTGAAAAGCAAAAGAATTAACAACAATATAAATACCAA
AACAACAAAAAATTATTAAATTTCAATATAAAATTATAAATTAATAAATAACAAAATCAAAATAT
AACATTTAATTTTAATTATTTTTCATCTAACTTATAAAAAAAAATTTATTAAAATTTTTCATCTA
AAATCCCTATATATATCATATTAAATTATTAATCTCGTAATTTTTTCAATTATAAAATCCCAATC
TCTCTAACTAAATTTGATCTAAAAAAATTTTAAAAATTACAAATTTTTAAAATTATATTTTAATA
AAATTAATTACAAAATTAAATAATGGG
Found at i:8478609 original size:80 final size:80
Alignment explanation
Indices: 8478476--8478640 Score: 276
Period size: 80 Copynumber: 2.1 Consensus size: 80
8478466 AATATATTTT
* *
8478476 AAAGTTAATTAAATTTAATAGGCCAATTTCATTATCTTATCTAAGCTAATACTTTCAAGTAAGTC
1 AAAGTTAATTAAATTTAATAGGCCAATCTCATTATCTTATCTAAGCTAATACTTTCAAGGAAGTC
*
8478541 GTAAAGTAAAAAAAA
66 ATAAAGTAAAAAAAA
* *
8478556 AAAGTTAATTAAATTTAATAGGCCAATCTCATTATCTTATTTGAGCTAATACTTTCAAGGAAGTC
1 AAAGTTAATTAAATTTAATAGGCCAATCTCATTATCTTATCTAAGCTAATACTTTCAAGGAAGTC
*
8478621 ATAACGTAAAAAAAA
66 ATAAAGTAAAAAAAA
8478636 AAAGT
1 AAAGT
8478641 AAATACATAG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (80 bp):
AAAGTTAATTAAATTTAATAGGCCAATCTCATTATCTTATCTAAGCTAATACTTTCAAGGAAGTC
ATAAAGTAAAAAAAA
Found at i:8483508 original size:7 final size:7
Alignment explanation
Indices: 8483496--8483526 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8483486 AATTTTTTAA
8483496 AAAAAAT
1 AAAAAAT
8483503 AAAAAAT
1 AAAAAAT
8483510 AAAAAAT
1 AAAAAAT
*
8483517 AAAAACT
1 AAAAAAT
8483524 AAA
1 AAA
8483527 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:8484483 original size:17 final size:18
Alignment explanation
Indices: 8484448--8484485 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8484438 TTCCTTTAAA
8484448 AAAAAGATTGAAAATGGT
1 AAAAAGATTGAAAATGGT
8484466 AAAAAGAATT-AAAA-GGT
1 AAAAAG-ATTGAAAATGGT
8484483 AAA
1 AAA
8484486 TATCAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 10 0.53
19 3 0.16
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.18
Consensus pattern (18 bp):
AAAAAGATTGAAAATGGT
Found at i:8484708 original size:31 final size:33
Alignment explanation
Indices: 8484673--8484737 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 33
8484663 CTTTTGCTTG
* *
8484673 TTAGAATGATACAAAAATGAAAA-AT-AAAAAA
1 TTAGAAGGAAACAAAAATGAAAAGATGAAAAAA
* *
8484704 TTAGAAGGAAAGAAATATGAAAAGATGAAAAAA
1 TTAGAAGGAAACAAAAATGAAAAGATGAAAAAA
8484737 T
1 T
8484738 ATACATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 19 0.68
32 2 0.07
33 7 0.25
ACGTcount: A:0.65, C:0.02, G:0.15, T:0.18
Consensus pattern (33 bp):
TTAGAAGGAAACAAAAATGAAAAGATGAAAAAA
Found at i:8485311 original size:30 final size:30
Alignment explanation
Indices: 8485241--8485300 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8485231 ACTTATGTTC
* *
8485241 AAAACTTATTTAAGTACAAATTAAAATTTA
1 AAAATTTATTTAAATACAAATTAAAATTTA
*
8485271 AAAATTTATTTAAATACAAATTAAAGTTTA
1 AAAATTTATTTAAATACAAATTAAAATTTA
8485301 TGAGTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATTTATTTAAATACAAATTAAAATTTA
Found at i:8494174 original size:39 final size:39
Alignment explanation
Indices: 8494131--8494225 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 39
8494121 AAAACAACAA
*
8494131 ATTAAACCTAATCTAACATGT-TTTAAATCATGCATAAAC
1 ATTAAACCTAATCTAA-ATGTATTTAAATCATACATAAAC
*
8494170 ATTAAACCTAATC-AAATTTAACTTTAAATCATACATAAAC
1 ATTAAACCTAATCTAAATGT-A-TTTAAATCATACATAAAC
8494210 ATTAAACCTAATCTAA
1 ATTAAACCTAATCTAA
8494226 TAGCTTGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
37 3 0.06
38 2 0.04
39 13 0.26
40 30 0.60
41 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (39 bp):
ATTAAACCTAATCTAAATGTATTTAAATCATACATAAAC
Found at i:8494458 original size:20 final size:21
Alignment explanation
Indices: 8494421--8494460 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8494411 TAAATTTCTT
*
8494421 AAAAACTTAAATTAAACTTGC
1 AAAAAATTAAATTAAACTTGC
8494442 AAAAAATTAAATT-AACTTG
1 AAAAAATTAAATTAAACTTG
8494461 AAAGAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAAATTAAATTAAACTTGC
Found at i:8497295 original size:7 final size:7
Alignment explanation
Indices: 8497283--8497334 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
8497273 GAAAGGCAAA
8497283 AAAAAAG
1 AAAAAAG
8497290 AAAAAAG
1 AAAAAAG
*
8497297 AAAAAAA
1 AAAAAAG
*
8497304 AAGAGAAAC
1 AA-A-AAAG
*
8497313 CAAAAAG
1 AAAAAAG
8497320 AAAAAAG
1 AAAAAAG
8497327 AAAAAAG
1 AAAAAAG
8497334 A
1 A
8497335 TAGGGAAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
7 32 0.84
8 2 0.05
9 4 0.11
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:8498357 original size:22 final size:22
Alignment explanation
Indices: 8498309--8498357 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
8498299 TGATGTTTTA
8498309 AATTTTTTGTTTTATCTTATTT
1 AATTTTTTGTTTTATCTTATTT
*
8498331 TATTTTATT-TTTTA-CTTAATTT
1 AATTTT-TTGTTTTATCTT-ATTT
8498353 AATTT
1 AATTT
8498358 CATGCAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 3 0.13
22 18 0.78
23 2 0.09
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (22 bp):
AATTTTTTGTTTTATCTTATTT
Found at i:8498397 original size:3 final size:3
Alignment explanation
Indices: 8498385--8498434 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
8498375 CATGTCATAA
8498385 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
8498433 AT
1 AT
8498435 GATGTAATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8498503 original size:3 final size:3
Alignment explanation
Indices: 8498497--8498525 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8498487 AATAATAATA
8498497 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
8498526 TTTAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:8500278 original size:4 final size:4
Alignment explanation
Indices: 8500269--8500298 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
8500259 TATGCTATGC
*
8500269 TTAT TTAT TTAT TTAT TTGT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
8500299 GTTAACATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:8500299 original size:12 final size:12
Alignment explanation
Indices: 8500269--8500301 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8500259 TATGCTATGC
*
8500269 TTATTTATTTAT
1 TTATTTGTTTAT
8500281 TTATTTGTTTAT
1 TTATTTGTTTAT
8500293 TTATTTGTT
1 TTATTTGTT
8500302 AACATTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (12 bp):
TTATTTGTTTAT
Found at i:8504812 original size:70 final size:71
Alignment explanation
Indices: 8504738--8504875 Score: 224
Period size: 70 Copynumber: 2.0 Consensus size: 71
8504728 GTTATTCTAG
* * *
8504738 TAGTGGATGATAAAAGCAATTTAAATGATGACCATGATTGATGTTGCC-TTGGGAAAATGTAGGG
1 TAGTGGATGATAAAAGCAATTTAAATGATGACCATGATTGATGTTACCATAGGAAAAATGTAGGG
8504802 CATTAA
66 CATTAA
* *
8504808 TAGTGGATGATAAAAGCAATTTAAATGATGACTATGATTGTTGTTACCATAGGAAAAATGTAGGG
1 TAGTGGATGATAAAAGCAATTTAAATGATGACCATGATTGATGTTACCATAGGAAAAATGTAGGG
8504873 CAT
66 CAT
8504876 GTGATCTAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
70 45 0.73
71 17 0.27
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (71 bp):
TAGTGGATGATAAAAGCAATTTAAATGATGACCATGATTGATGTTACCATAGGAAAAATGTAGGG
CATTAA
Found at i:8510285 original size:25 final size:26
Alignment explanation
Indices: 8510257--8510316 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
8510247 AAAAAACTCC
*
8510257 AATAAAAAATA-AAATCAAAATAAAA
1 AATAAAAAATATAAATCAAAAGAAAA
*
8510282 AATAAAAAA-ATCAATCAAAAGAAAA
1 AATAAAAAATATAAATCAAAAGAAAA
8510307 AA-AAAGAAAT
1 AATAAA-AAAT
8510317 TATTCAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.13
Consensus pattern (26 bp):
AATAAAAAATATAAATCAAAAGAAAA
Found at i:8510287 original size:18 final size:18
Alignment explanation
Indices: 8510218--8510288 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
8510208 AAAATAATCA
*
8510218 CAAAATAAAAAATAAGAT
1 CAAAATAAAAAATAAAAT
* *
8510236 CAAATTCAAACAAA-AAACT
1 CAAAAT-AAA-AAATAAAAT
*
8510255 C-CAATAAAAAATAAAAT
1 CAAAATAAAAAATAAAAT
8510272 CAAAATAAAAAATAAAA
1 CAAAATAAAAAATAAAA
8510289 AAATCAATCA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
16 3 0.07
17 8 0.19
18 21 0.50
19 7 0.17
20 3 0.07
ACGTcount: A:0.72, C:0.11, G:0.01, T:0.15
Consensus pattern (18 bp):
CAAAATAAAAAATAAAAT
Found at i:8510309 original size:21 final size:20
Alignment explanation
Indices: 8510260--8510311 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
8510250 AAACTCCAAT
*
8510260 AAAAAATAAAATCAAAATAAA
1 AAAAAAAAAAATC-AAATAAA
*
8510281 AAATAAAAAAATC-AATCAAA
1 AAAAAAAAAAATCAAAT-AAA
8510301 AGAAAAAAAAA
1 A-AAAAAAAAA
8510312 GAAATTATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
20 4 0.15
21 19 0.73
ACGTcount: A:0.81, C:0.06, G:0.02, T:0.12
Consensus pattern (20 bp):
AAAAAAAAAAATCAAATAAA
Found at i:8510362 original size:52 final size:51
Alignment explanation
Indices: 8510297--8510394 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
8510287 AAAAATCAAT
**
8510297 CAAAAGAAAAAAAAAGAAATTATTCAGACTGAAAACCCAGAAAAGAGCTATC
1 CAAAAGAAAAAAAAA-AAAAGATTCAGACTGAAAACCCAGAAAAGAGCTATC
* * *
8510349 CAAAA-AAAGAAAAAAAAAAGATTCAGATTGAAAATCTAGAAAAGAG
1 CAAAAGAAA-AAAAAAAAAAGATTCAGACTGAAAACCCAGAAAAGAG
8510395 AGGTCTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
51 29 0.73
52 11 0.28
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.13
Consensus pattern (51 bp):
CAAAAGAAAAAAAAAAAAAGATTCAGACTGAAAACCCAGAAAAGAGCTATC
Found at i:8511537 original size:71 final size:70
Alignment explanation
Indices: 8511432--8511622 Score: 194
Period size: 71 Copynumber: 2.7 Consensus size: 70
8511422 TGATGTTGTC
* * ** *
8511432 CCAA-TCATCTTTATTTTTTGA-GT-TGTTGTATTGTCCTGGTCATATTT-GTTTTTCTGACCA-
1 CCAAGTCATCTTTATTTTTTGACCTATGCTG--TTGTCCTAATCATATTTATTTTTTC-GA-CAT
8511492 TTGGTATTA
62 TTGGTATTA
8511501 TCCAAGTCATCTTTATTTTTTGACCTATGCTGTTGTCCTAATCATATTTATTTTTTCGACATTTG
1 -CCAAGTCATCTTTATTTTTTGACCTATGCTGTTGTCCTAATCATATTTATTTTTTCGACATTTG
8511566 GTATTA
65 GTATTA
* * * * * *
8511572 CTCTAGTCATATTTATTTTTTAACCTATGGTGTTGTCCCAATCATCTTTAT
1 C-CAAGTCATCTTTATTTTTTGACCTATGCTGTTGTCCTAATCATATTTAT
8511623 GTTTCTAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
70 7 0.07
71 86 0.83
72 7 0.07
73 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.51
Consensus pattern (70 bp):
CCAAGTCATCTTTATTTTTTGACCTATGCTGTTGTCCTAATCATATTTATTTTTTCGACATTTGG
TATTA
Found at i:8511617 original size:106 final size:106
Alignment explanation
Indices: 8511405--8511622 Score: 248
Period size: 106 Copynumber: 2.0 Consensus size: 106
8511395 GGTGTTGTCT
* * * * *
8511405 TTTATTTTTTTGACCTATGATGTTGTCCCAATCATCTTTATTTTTTGAGTTGTTGTATTGTCCTG
1 TTTA-TTTTTTGACCTATGATGTTGTCCCAATCATATTTATTTTTTGAATTGTGGTATTCTCCTA
* *
8511470 GTCATATTTGTTTTTCTGACCATTGGTATTATCCAAGTCATC
65 GTCATATTTATTTTTCTAACCATTGGTATTATCCAAGTCATC
* *
8511512 TTTATTTTTTGACCTATGCTGTTGTCCTAATCATATTTATTTTTTCGACATT-TGGTATTACT-C
1 TTTATTTTTTGACCTATGATGTTGTCCCAATCATATTTATTTTTT-GA-ATTGTGGTATT-CTCC
* *
8511575 TAGTCATATTTATTTTT-TAACC-TATGGTGTTGTCCCAA-TCATC
63 TAGTCATATTTATTTTTCTAACCAT-TGGTATTAT-CCAAGTCATC
8511618 TTTAT
1 TTTAT
8511623 GTTTCTAACC
Statistics
Matches: 95, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
105 1 0.01
106 59 0.62
107 32 0.34
108 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (106 bp):
TTTATTTTTTGACCTATGATGTTGTCCCAATCATATTTATTTTTTGAATTGTGGTATTCTCCTAG
TCATATTTATTTTTCTAACCATTGGTATTATCCAAGTCATC
Found at i:8511639 original size:71 final size:69
Alignment explanation
Indices: 8511470--8511920 Score: 350
Period size: 71 Copynumber: 6.3 Consensus size: 69
8511460 TATTGTCCTG
* * * * *
8511470 GTCATATTTGTTTTTCTGACCAT-TGGTATTATCCAAGTCATCTTTA-TTTTTTGACCTATGCTG
1 GTCATCTTTATTTTT-TGACC-TGTGGTATTATCC-AGTCATATTTATTTTTTTAACC-ATGGTG
*
8511533 TTGTCCTA
62 TTGTCCCA
* * * * *
8511541 ATCATATTTATTTTTTCGACATTTGGTATTACTCTAGTCATATTTA-TTTTTTAACCTATGGTGT
1 GTCATCTTTATTTTTT-GACCTGTGGTATTA-TCCAGTCATATTTATTTTTTTAACC-ATGGTGT
8511605 TGTCCCA
63 TGTCCCA
* * * * * * *
8511612 ATCATCTTTATGTTTCTAACCTGTGGTATTATTCCAATCATATATATTTTTCTAACCGACGGTGT
1 GTCATCTTTAT-TTTTTGACCTGTGGTATTA-TCCAGTCATATTTATTTTTTTAACC-ATGGTGT
*
8511677 TGTCCTA
63 TGTCCCA
* * **
8511684 GTCATCTTTATTTTTTGAGCTGTGATGCTATCCCAGTCATATTTATTTTTTTCAACCACTGGTGT
1 GTCATCTTTATTTTTTGACCTGTGGTATTAT-CCAGTCATATTTATTTTTTT-AACCA-TGGTGT
* **
8511749 TATTACA
63 TGTCCCA
* * * * * *
8511756 GTCATCTTTATGTTTCTAACCTGCGGTATTATTCCAATCATATTTATTTTTTTAACCGACGATGT
1 GTCATCTTTAT-TTTTTGACCTGTGGTATTA-TCCAGTCATATTTATTTTTTTAACC-ATGGTGT
*
8511821 TGTCCTA
63 TGTCCCA
* * **
8511828 GTCATCTTTATTTTTTGAGCTGTGATGCTATCCCAGTCATATTTATTTTTTTCAACCACTGGTGT
1 GTCATCTTTATTTTTTGACCTGTGGTATTAT-CCAGTCATATTTATTTTTTT-AACCA-TGGTGT
*
8511893 TATCCCA
63 TGTCCCA
* *
8511900 GTCATCTTTAGTTCTTGACCT
1 GTCATCTTTATTTTTTGACCT
8511921 ACGATGTTAT
Statistics
Matches: 301, Mismatches: 65, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
70 4 0.01
71 151 0.50
72 113 0.38
73 32 0.11
74 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (69 bp):
GTCATCTTTATTTTTTGACCTGTGGTATTATCCAGTCATATTTATTTTTTTAACCATGGTGTTGT
CCCA
Found at i:8511777 original size:144 final size:144
Alignment explanation
Indices: 8511576--8511909 Score: 566
Period size: 144 Copynumber: 2.3 Consensus size: 144
8511566 GTATTACTCT
* * *
8511576 AGTCATATTTA-TTTTTT-AACCTA-TGGTGTTGTCCCAATCATCTTTATGTTTCTAACCTGTGG
1 AGTCATATTTATTTTTTTCAACC-ACTGGTGTTATCCCAGTCATCTTTATGTTTCTAACCTGCGG
*
8511638 TATTATTCCAATCATATATATTTTTCTAACCGACGGTGTTGTCCTAGTCATCTTTATTTTTTGAG
65 TATTATTCCAATCATATATATTTTTCTAACCGACGATGTTGTCCTAGTCATCTTTATTTTTTGAG
8511703 CTGTGATGCTATCCC
130 CTGTGATGCTATCCC
**
8511718 AGTCATATTTATTTTTTTCAACCACTGGTGTTATTACAGTCATCTTTATGTTTCTAACCTGCGGT
1 AGTCATATTTATTTTTTTCAACCACTGGTGTTATCCCAGTCATCTTTATGTTTCTAACCTGCGGT
* *
8511783 ATTATTCCAATCATATTTATTTTTTTAACCGACGATGTTGTCCTAGTCATCTTTATTTTTTGAGC
66 ATTATTCCAATCATATATATTTTTCTAACCGACGATGTTGTCCTAGTCATCTTTATTTTTTGAGC
8511848 TGTGATGCTATCCC
131 TGTGATGCTATCCC
8511862 AGTCATATTTATTTTTTTCAACCACTGGTGTTATCCCAGTCATCTTTA
1 AGTCATATTTATTTTTTTCAACCACTGGTGTTATCCCAGTCATCTTTA
8511910 GTTCTTGACC
Statistics
Matches: 179, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
142 11 0.06
143 7 0.04
144 161 0.90
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (144 bp):
AGTCATATTTATTTTTTTCAACCACTGGTGTTATCCCAGTCATCTTTATGTTTCTAACCTGCGGT
ATTATTCCAATCATATATATTTTTCTAACCGACGATGTTGTCCTAGTCATCTTTATTTTTTGAGC
TGTGATGCTATCCC
Found at i:8511866 original size:35 final size:35
Alignment explanation
Indices: 8511498--8512447 Score: 209
Period size: 35 Copynumber: 26.6 Consensus size: 35
8511488 ACCATTGGTA
* * * * *
8511498 TTATCCAAGTCATCTTTATTTTTTGACCTATGCTG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
* * * * * * * *
8511533 TTGTCCTAATCATATTTATTTTTTCGACATTTGGTA
1 TTATCCCAGTCATATTTATTTTTT-AACCTGTGATG
* * *
8511569 TTA-CTCTAGTCATATTTATTTTTTAACCTATGGTG
1 TTATC-CCAGTCATATTTATTTTTTAACCTGTGATG
* * * * * *
8511604 TTGTCCCAATCATCTTTATGTTTCTAACCTGTGGTA
1 TTATCCCAGTCATATTTAT-TTTTTAACCTGTGATG
* * * * *
8511640 TTATTCCAATCATATATATTTTTCTAACC-GACGGTG
1 TTATCCCAGTCATATTTATTTTT-TAACCTG-TGATG
* * * * *
8511676 TTGTCCTAGTCATCTTTATTTTTTGAGCTGTGATG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
* ** *
8511711 CTATCCCAGTCATATTTATTTTTTTCAACCACTGGTG
1 TTATCCCAGTCATATTTA-TTTTTT-AACCTGTGATG
** * * * * *
8511748 TTATTACAGTCATCTTTATGTTTCTAACCTGCGGTA
1 TTATCCCAGTCATATTTAT-TTTTTAACCTGTGATG
* * *
8511784 TTATTCCAATCATATTTATTTTTTTAACC-GACGATG
1 TTATCCCAGTCATATTTA-TTTTTTAACCTG-TGATG
* * * * *
8511820 TTGTCCTAGTCATCTTTATTTTTTGAGCTGTGATG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
* ** *
8511855 CTATCCCAGTCATATTTATTTTTTTCAACCACTGGTG
1 TTATCCCAGTCATATTTA-TTTTTT-AACCTGTGATG
* * * * **
8511892 TTATCCCAGTCATCTTTAGTTCTTGACCTACGATG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
** * * * * *
8511927 TTATCCTGGTCATTTTTATTTTTTGACTTATGGTG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
*** * * * ** *
8511962 TTATCTTGGTTATCTTTATTTTTTGATTTGTAATG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
* ** * **
8511997 TTGTCCTGGTCATATTT-TTTGTCGACCAT-T-AGTG
1 TTATCCCAGTCATATTTATTTTTTAACC-TGTGA-TG
* * * * * *
8512031 TTGTCCTAGTCATCTTTATTTTTTGACCTACTATAGTG
1 TTATCCCAGTCATATTTATTTTTTAACCT-GT-GA-TG
* * * ** *
8512069 TTAT-CCTGATCATTTTTAATTTTTAACCTACGGTG
1 TTATCCCAG-TCATATTTATTTTTTAACCTGTGATG
* *** * *
8512104 CTATCTTGGTCATATTTATTTTTTCAA-CTGCTGGTA
1 TTATCCCAGTCATATTTATTTTTT-AACCTG-TGATG
* * * ** *
8512140 TTGTCCCAGTCATTTTTATTTTTTGACCT-ACATTA
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGA-TG
* * * *
8512175 TTGTCCCAGTCATCTTTATTTTTCTAACCTACATGTTG
1 TTATCCCAGTCATATTTATTTTT-TAACCT--GTGATG
* * * * *
8512213 TT-GCCTAGGTCATTTTTATTTTTTAACCTATGGTG
1 TTATCCCA-GTCATATTTATTTTTTAACCTGTGATG
* * * * * *
8512248 TCATCTCGGTTATATTTATTTTTTCTACCAT-TAATG
1 TTATCCCAGTCATATTTATTTTTT-AACC-TGTGATG
* * * * *
8512284 TTGT-CCTGATCATCTTTATTTTTTTTACCTGTAATG
1 TTATCCCAG-TCATATTTA-TTTTTTAACCTGTGATG
* * * *
8512320 TCATCCCAGTCATCTTTATTTTTTTAACCTATGGTG
1 TTATCCCAGTCATATTTA-TTTTTTAACCTGTGATG
* * * * * **
8512356 TTATCTCAATCTTTTTTATTTTTCAACCT-ACAGTG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGA-TG
* * * **
8512391 TTGTCCCAGTCATTTTTATTTTCTAACCCAT-AGTG
1 TTATCCCAGTCATATTTATTTTTTAACCTGTGA-TG
* *
8512426 TTGTCCCAGTCATATTTGTTTT
1 TTATCCCAGTCATATTTATTTT
8512448 CCCAATCGCT
Statistics
Matches: 677, Mismatches: 196, Indels: 84
0.71 0.20 0.09
Matches are distributed among these distances:
33 1 0.00
34 25 0.04
35 301 0.44
36 241 0.36
37 68 0.10
38 41 0.06
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (35 bp):
TTATCCCAGTCATATTTATTTTTTAACCTGTGATG
Found at i:8511932 original size:72 final size:71
Alignment explanation
Indices: 8511576--8511950 Score: 330
Period size: 72 Copynumber: 5.2 Consensus size: 71
8511566 GTATTACTCT
* * * *
8511576 AGTCATATTTA-TTTTTTAACCTA-TGGTGTTGTCCCAATCATCTTTATGTTTCTAACCTGTGGT
1 AGTCATATTTATTTTTTTAACCGACTGGTGTTGTCCCAGTCATCTTTA-GTTT-TGACCTGTGAT
* *
8511639 ATTATTCC
64 GTTATCCC
* * * * * *
8511647 AATCATATATATTTTTCTAACCGAC-GGTGTTGTCCTAGTCATCTTTATTTTTTGAGCTGTGATG
1 AGTCATATTTATTTTTTTAACCGACTGGTGTTGTCCCAGTCATCTTTA-GTTTTGACCTGTGATG
*
8511711 CTATCCC
65 TTATCCC
* ** * * *
8511718 AGTCATATTTATTTTTTTCAACC-ACTGGTGTTATTACAGTCATCTTTATGTTTCTAACCTGCGG
1 AGTCATATTTATTTTTTT-AACCGACTGGTGTTGTCCCAGTCATCTTTA-GTTT-TGACCTGTGA
* *
8511782 TATTATTCC
63 TGTTATCCC
* * * * *
8511791 AATCATATTTATTTTTTTAACCGAC-GATGTTGTCCTAGTCATCTTTATTTTTTGAGCTGTGATG
1 AGTCATATTTATTTTTTTAACCGACTGGTGTTGTCCCAGTCATCTTTA-GTTTTGACCTGTGATG
*
8511855 CTATCCC
65 TTATCCC
* **
8511862 AGTCATATTTATTTTTTTCAACC-ACTGGTGTTATCCCAGTCATCTTTAGTTCTTGACCTACGAT
1 AGTCATATTTATTTTTTT-AACCGACTGGTGTTGTCCCAGTCATCTTTAGTT-TTGACCTGTGAT
*
8511926 GTTATCCT
64 GTTATCCC
* *
8511934 GGTCATTTTTATTTTTT
1 AGTCATATTTATTTTTT
8511951 GACTTATGGT
Statistics
Matches: 241, Mismatches: 54, Indels: 17
0.77 0.17 0.05
Matches are distributed among these distances:
71 72 0.30
72 138 0.57
73 31 0.13
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (71 bp):
AGTCATATTTATTTTTTTAACCGACTGGTGTTGTCCCAGTCATCTTTAGTTTTGACCTGTGATGT
TATCCC
Found at i:8512288 original size:144 final size:142
Alignment explanation
Indices: 8511858--8512350 Score: 385
Period size: 144 Copynumber: 3.4 Consensus size: 142
8511848 TGTGATGCTA
* ** * * * *
8511858 TCCCAGTCATATTTATTTTTTTCAACC-ACTGGTGTTATCCCAGTCATCTTTAGTTCTTGACCTA
1 TCCCAGTCATATTTA-TTTTTT-GACCTA-TAATGTTGTCCCAGTCATCTTTATTTTTTAACCTA
* * * * *
8511922 CGATGTT-ATCCTGGTCATTTTTATTTTTTGACTTATGGTGTTATCTTGGTTATCTTTATTTTTT
63 CGATGTTGTTCCTGGTCATTTTTATTTTTTAACCTATGGTGTCATCTTGGTTATATTTATTTTTT
* *
8511986 -GA-TTTGTAATGTTG
128 CAACTAT-TAATGTTG
** * * * * * *
8512000 TCCTGGTCATATTT-TTTGTCGACC-ATTAGTGTTGTCCTAGTCATCTTTATTTTTTGACCTACT
1 TCCCAGTCATATTTATTTTTTGACCTA-TAATGTTGTCCCAGTCATCTTTATTTTTTAACCTACG
* * * *
8512063 ATAG-TGTTATCCTGATCATTTTTAATTTTTAACCTACGGTG-CTATCTTGGTCATATTTATTTT
65 AT-GTTG-T-TCCTGGTCATTTTTATTTTTTAACCTATGGTGTC-ATCTTGGTTATATTTATTTT
** ** *
8512126 TTCAACTGCTGGTATTG
126 TTCAACTATTAATGTTG
* * * *
8512143 TCCCAGTCATTTTTATTTTTTGACCTACATTATTGTCCCAGTCATCTTTATTTTTCTAACCTAC-
1 TCCCAGTCATATTTATTTTTTGACCTATAATGTTGTCCCAGTCATCTTTATTTTT-TAACCTACG
*
8512207 ATGTTGTTGCCTAGGTCATTTTTATTTTTTAACCTATGGTGTCATCTCGGTTATATTTATTTTTT
65 ATGTTGTT-CCT-GGTCATTTTTATTTTTTAACCTATGGTGTCATCTTGGTTATATTTATTTTTT
* *
8512272 CTACCATTAATGTTG
128 CAACTATTAATGTTG
* * * * **
8512287 T-CCTGATCATCTTTATTTTTTTTACCTGTAATGTCATCCCAGTCATCTTTATTTTTTTAACCTA
1 TCCCAG-TCATATTTA-TTTTTTGACCTATAATGTTGTCCCAGTCATCTTTA-TTTTTTAACCTA
8512351 TGGTGTTATC
Statistics
Matches: 276, Mismatches: 58, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
139 38 0.14
140 5 0.02
142 60 0.22
143 25 0.09
144 99 0.36
145 44 0.16
146 5 0.02
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (142 bp):
TCCCAGTCATATTTATTTTTTGACCTATAATGTTGTCCCAGTCATCTTTATTTTTTAACCTACGA
TGTTGTTCCTGGTCATTTTTATTTTTTAACCTATGGTGTCATCTTGGTTATATTTATTTTTTCAA
CTATTAATGTTG
Found at i:8512302 original size:36 final size:36
Alignment explanation
Indices: 8512262--8512343 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
8512252 CTCGGTTATA
** *
8512262 TTTATTTTTTCTACCAT-TAATGTTGT-CCTGATCATC
1 TTTATTTTTTCTACC-TGTAATGTCATCCCAG-TCATC
*
8512298 TTTATTTTTTTTACCTGTAATGTCATCCCAGTCATC
1 TTTATTTTTTCTACCTGTAATGTCATCCCAGTCATC
8512334 TTTATTTTTT
1 TTTATTTTTT
8512344 TAACCTATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
35 1 0.03
36 36 0.90
37 3 0.08
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.56
Consensus pattern (36 bp):
TTTATTTTTTCTACCTGTAATGTCATCCCAGTCATC
Found at i:8512340 original size:72 final size:74
Alignment explanation
Indices: 8512178--8512350 Score: 180
Period size: 72 Copynumber: 2.4 Consensus size: 74
8512168 TACATTATTG
* *
8512178 TCCCAGTCATCTTTA-TTTTTCTAACCTACATGTTGTTGCCTAGGTCATTTTTATTTTTTAACCT
1 TCCCAGTCATCTTTATTTTTTCTAACCTACATGTTGTTGCCTAGATCATCTTTATTTTTTAACCT
**
8512242 ATGGTGTCA
66 ATAATGTCA
* * * * *
8512251 TCTCGGTTATATTTATTTTTTCT-ACCATTA-ATGTTG-T-CCT-GATCATCTTTATTTTTTTTA
1 TCCCAGTCATCTTTATTTTTTCTAACC--TACATGTTGTTGCCTAGATCATCTTTA-TTTTTTAA
*
8512311 CCTGTAATGTCA
63 CCTATAATGTCA
8512323 TCCCAGTCATCTTTATTTTTT-TAACCTA
1 TCCCAGTCATCTTTATTTTTTCTAACCTA
8512351 TGGTGTTATC
Statistics
Matches: 81, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
70 2 0.02
71 10 0.12
72 39 0.48
73 15 0.19
74 13 0.16
75 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (74 bp):
TCCCAGTCATCTTTATTTTTTCTAACCTACATGTTGTTGCCTAGATCATCTTTATTTTTTAACCT
ATAATGTCA
Found at i:8512595 original size:15 final size:15
Alignment explanation
Indices: 8512563--8512594 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
8512553 TTTTCAAAAC
8512563 AAACAACAACAAATA
1 AAACAACAACAAATA
8512578 AAACAA-AACAAATA
1 AAACAACAACAAATA
8512592 AAA
1 AAA
8512595 AAGAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.78, C:0.16, G:0.00, T:0.06
Consensus pattern (15 bp):
AAACAACAACAAATA
Found at i:8516041 original size:6 final size:7
Alignment explanation
Indices: 8516027--8516070 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
8516017 TCTTTTTTTC
8516027 TTCATTT
1 TTCATTT
8516034 TTCATTT
1 TTCATTT
8516041 TTCACTTT
1 TTCA-TTT
8516049 TT--TTT
1 TTCATTT
*
8516054 TTTATTT
1 TTCATTT
8516061 TTCATTT
1 TTCATTT
8516068 TTC
1 TTC
8516071 CTTAGAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
5 5 0.15
7 23 0.70
8 5 0.15
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (7 bp):
TTCATTT
Found at i:8516049 original size:27 final size:27
Alignment explanation
Indices: 8516018--8516070 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
8516008 ACCTTTTTTT
8516018 CTTTTTTTCTTCATTTTTCATTTTTCA
1 CTTTTTTTCTTCATTTTTCATTTTTCA
* *
8516045 CTTTTTTTTTTTATTTTTCATTTTTC
1 CTTTTTTTCTTCATTTTTCATTTTTC
8516071 CTTAGAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.75
Consensus pattern (27 bp):
CTTTTTTTCTTCATTTTTCATTTTTCA
Found at i:8516054 original size:20 final size:19
Alignment explanation
Indices: 8516031--8516069 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
8516021 TTTTTCTTCA
8516031 TTTTTCATTTTTCACTTTTT
1 TTTTTCATTTTTCA-TTTTT
*
8516051 TTTTTTATTTTTCATTTTT
1 TTTTTCATTTTTCATTTTT
8516070 CCTTAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTCATTTTTCATTTTT
Found at i:8518187 original size:18 final size:18
Alignment explanation
Indices: 8518164--8518208 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
8518154 TAAGGTTTGT
8518164 TTTAGGGTTTGAGTAAGG
1 TTTAGGGTTTGAGTAAGG
* * *
8518182 TTTAGGGCTTGATTAGGG
1 TTTAGGGTTTGAGTAAGG
8518200 TTTAGGGTT
1 TTTAGGGTT
8518209 CAATTTAGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (18 bp):
TTTAGGGTTTGAGTAAGG
Found at i:8518232 original size:30 final size:29
Alignment explanation
Indices: 8518198--8518294 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 29
8518188 GCTTGATTAG
*
8518198 GGTTTAGGGTTCAATTTAGAGTTTAGGCTA
1 GGTTTAGGGTTAAATTTAG-GTTTAGGCTA
* * * *
8518228 GGTTTAGGTTTAAAATAAGGTTTAGGGTTA
1 GGTTTAGGGTTAAATTTAGGTTTA-GGCTA
* *
8518258 GGTTTA-GGTTTAGTTTAGGGTTTAGGCTTA
1 GGTTTAGGGTTAAATTTA-GGTTTAGGC-TA
8518288 GGTTTAG
1 GGTTTAG
8518295 TGTTTAGGCT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
29 13 0.25
30 39 0.75
ACGTcount: A:0.23, C:0.03, G:0.32, T:0.42
Consensus pattern (29 bp):
GGTTTAGGGTTAAATTTAGGTTTAGGCTA
Found at i:8518237 original size:6 final size:6
Alignment explanation
Indices: 8518212--8518331 Score: 91
Period size: 6 Copynumber: 19.7 Consensus size: 6
8518202 TAGGGTTCAA
* ** * * *
8518212 TTTAGAG TTTAGG -CTAGG TTTAGG TTTAAA ATAAGG TTTAGG GTTAGG
1 TTTAG-G TTTAGG TTTAGG TTTAGG TTTAGG TTTAGG TTTAGG TTTAGG
* *
8518260 TTTAGG TTTA-G TTTAGGG TTTAGG CTTAGG TTTAGTG TTTAGG CTTAGG
1 TTTAGG TTTAGG TTTA-GG TTTAGG TTTAGG TTTAG-G TTTAGG TTTAGG
* * *
8518309 TTTATG TTAATG TTTAGGG TTTA
1 TTTAGG TTTAGG TTTA-GG TTTA
8518332 TAGTTAGGTT
Statistics
Matches: 88, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
5 9 0.10
6 58 0.66
7 21 0.24
ACGTcount: A:0.22, C:0.03, G:0.30, T:0.46
Consensus pattern (6 bp):
TTTAGG
Found at i:8518294 original size:19 final size:19
Alignment explanation
Indices: 8518249--8518312 Score: 87
Period size: 19 Copynumber: 3.5 Consensus size: 19
8518239 AAAATAAGGT
* *
8518249 TTAGGGTTA-GGTTTAGGT
1 TTAGGTTTAGGGTTTAGGC
8518267 TTA-GTTTAGGGTTTAGGC
1 TTAGGTTTAGGGTTTAGGC
*
8518285 TTAGGTTTAGTGTTTAGGC
1 TTAGGTTTAGGGTTTAGGC
8518304 TTAGGTTTA
1 TTAGGTTTA
8518313 TGTTAATGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
17 4 0.10
18 14 0.34
19 23 0.56
ACGTcount: A:0.17, C:0.03, G:0.33, T:0.47
Consensus pattern (19 bp):
TTAGGTTTAGGGTTTAGGC
Found at i:8518342 original size:19 final size:18
Alignment explanation
Indices: 8518245--8518347 Score: 54
Period size: 19 Copynumber: 5.6 Consensus size: 18
8518235 GTTTAAAATA
*
8518245 AGGTTTAGGG-TTAGGTTT
1 AGGTTTAGGGTTTATG-TT
*
8518263 AGGTTTA--GTTTAGGGTTT
1 AGGTTTAGGGTTTA-TG-TT
*
8518281 AGGCTTA-GGTTTAGTGTTT
1 AGGTTTAGGGTTTA-TG-TT
*
8518300 AGGCTTA-GGTTTATGTT
1 AGGTTTAGGGTTTATGTT
*
8518317 AATGTTTAGGGTTTATAGTT
1 -AGGTTTAGGGTTTAT-GTT
*
8518337 AGGTTTTGGGT
1 AGGTTTAGGGT
8518348 AGGGTTTGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
16 1 0.01
17 5 0.07
18 25 0.34
19 39 0.53
20 3 0.04
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (18 bp):
AGGTTTAGGGTTTATGTT
Found at i:8518606 original size:17 final size:16
Alignment explanation
Indices: 8518584--8518615 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8518574 TTGATTGGGG
8518584 TTAGGGTTTAGAGTTTT
1 TTAGGGTTTAG-GTTTT
8518601 TTAGGGTTTAGGTTT
1 TTAGGGTTTAGGTTT
8518616 AAGGTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (16 bp):
TTAGGGTTTAGGTTTT
Found at i:8525821 original size:14 final size:14
Alignment explanation
Indices: 8525802--8525828 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8525792 TATGGGCTTT
8525802 ATTTATATTTTTAC
1 ATTTATATTTTTAC
8525816 ATTTATATTTTTA
1 ATTTATATTTTTA
8525829 TGTTGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATTTTTAC
Found at i:8526487 original size:3 final size:3
Alignment explanation
Indices: 8526479--8526511 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8526469 TTTTTATTGA
8526479 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8526512 TTAAGAAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8528565 original size:16 final size:16
Alignment explanation
Indices: 8528553--8528592 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
8528543 TCATCTTGGA
8528553 AAAGGCTCTTCTTTGT
1 AAAGGCTCTTCTTTGT
8528569 AAAGGCTCTTCTTTGT
1 AAAGGCTCTTCTTTGT
8528585 AAAGGCTC
1 AAAGGCTC
8528593 AACAACTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (16 bp):
AAAGGCTCTTCTTTGT
Found at i:8528674 original size:40 final size:40
Alignment explanation
Indices: 8528614--8528694 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
8528604 ATATTCTCAT
8528614 ATTGGAAAAGGCTCCCCTTGGTAGAGACTCAACAACTTTA
1 ATTGGAAAAGGCTCCCCTTGGTAGAGACTCAACAACTTTA
** * *
8528654 ATTGGAAAAGGCTCTTCTTGGTAGAGGCTTAACAACTTTA
1 ATTGGAAAAGGCTCCCCTTGGTAGAGACTCAACAACTTTA
8528694 A
1 A
8528695 AAATTCTTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (40 bp):
ATTGGAAAAGGCTCCCCTTGGTAGAGACTCAACAACTTTA
Found at i:8528736 original size:91 final size:91
Alignment explanation
Indices: 8528569--8528744 Score: 212
Period size: 91 Copynumber: 1.9 Consensus size: 91
8528559 TCTTCTTTGT
* * * *
8528569 AAAGGCTCTTCTTTGTAAAGGCTCAACAACTTTAAATATTCTCATATTGGAAAAGGCTCCCCTTG
1 AAAGGCTCTTCTTGGTAAAGGCTCAACAACTTTAAAAATTCTCATATTGGAAAAGGCTCACCTAG
* *
8528634 GTAGAGACTCAACAACTTTAATTGGA
66 ATAAAGACTCAACAACTTTAATTGGA
* * * *
8528660 AAAGGCTCTTCTTGGTAGAGGCTTAACAACTTTAAAAATTCTTC-TCTTGGAAATA-GCTCATCT
1 AAAGGCTCTTCTTGGTAAAGGCTCAACAACTTTAAAAATTC-TCATATTGGAAA-AGGCTCACCT
* *
8528723 AGATAAAGGCTCAATAACTTTA
64 AGATAAAGACTCAACAACTTTA
8528745 TTTCTCATAT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
91 68 0.96
92 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (91 bp):
AAAGGCTCTTCTTGGTAAAGGCTCAACAACTTTAAAAATTCTCATATTGGAAAAGGCTCACCTAG
ATAAAGACTCAACAACTTTAATTGGA
Found at i:8534379 original size:18 final size:18
Alignment explanation
Indices: 8534356--8534393 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8534346 ATCTTGGAAG
8534356 GTAAATAGAATTCACCAT
1 GTAAATAGAATTCACCAT
8534374 GTAAATAGAATTCACCAT
1 GTAAATAGAATTCACCAT
8534392 GT
1 GT
8534394 CTGGCAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (18 bp):
GTAAATAGAATTCACCAT
Found at i:8538816 original size:12 final size:11
Alignment explanation
Indices: 8538798--8538879 Score: 60
Period size: 12 Copynumber: 7.1 Consensus size: 11
8538788 AGATAAACAT
*
8538798 TTTTTTTCTTA
1 TTTTTTTATTA
8538809 TATTTTTTATTA
1 T-TTTTTTATTA
8538821 -TTTTTTATTTA
1 TTTTTTTA-TTA
*
8538832 TTTTATTTCTT-
1 TTTT-TTTATTA
8538843 TTTTTTTAATTA
1 TTTTTTT-ATTA
*
8538855 TTTCTCTTATTA
1 TTT-TTTTATTA
*
8538867 TTATTGTTATTA
1 TT-TTTTTATTA
8538879 T
1 T
8538880 AAGGTTTATT
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
10 10 0.17
11 10 0.17
12 31 0.53
13 7 0.12
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTTTTATTA
Found at i:8538832 original size:23 final size:22
Alignment explanation
Indices: 8538796--8538877 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 22
8538786 TCAGATAAAC
*
8538796 ATTTTTTTTCTTATATTTTTTATT
1 ATTTTTTAT-TTAT-TTTTTTATT
*
8538820 ATTTTTTATTTATTTTATTTCTT
1 ATTTTTTATTTATTTT-TTTATT
* * *
8538843 TTTTTTTAATTATTTCTCTTATT
1 ATTTTTTATTTATTT-TTTTATT
8538866 ATTATTGTTATT
1 ATT-TT-TTATT
8538878 ATAAGGTTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
22 3 0.07
23 28 0.61
24 11 0.24
25 4 0.09
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (22 bp):
ATTTTTTATTTATTTTTTTATT
Found at i:8539031 original size:21 final size:19
Alignment explanation
Indices: 8539007--8539061 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
8538997 TAACATGTAT
8539007 AAATATTAATAATAAAATTTA
1 AAATATTAA-AA-AAAATTTA
** *
8539028 AAATAACAAAAAAATTTTA
1 AAATATTAAAAAAAATTTA
*
8539047 AAAAATTAAAAAAAA
1 AAATATTAAAAAAAA
8539062 AATTTTACCT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 18 0.67
20 2 0.07
21 7 0.26
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATATTAAAAAAAATTTA
Found at i:8539048 original size:19 final size:20
Alignment explanation
Indices: 8539006--8539068 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 20
8538996 TTAACATGTA
* *
8539006 TAAATATTAATAATAAAA-TT
1 TAAA-ATTAAAAAAAAAATTT
*
8539026 TAAAA-TAACAAAAAAATTT
1 TAAAATTAAAAAAAAAATTT
8539045 TAAAAAATTAAAAAAAAAATTT
1 T--AAAATTAAAAAAAAAATTT
8539067 TA
1 TA
8539069 CCTGAATCGG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 9 0.25
19 4 0.11
20 5 0.14
21 4 0.11
22 14 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (20 bp):
TAAAATTAAAAAAAAAATTT
Found at i:8539063 original size:22 final size:21
Alignment explanation
Indices: 8539027--8539068 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
8539017 AATAAAATTT
*
8539027 AAAATAACAAAAAAATTTTAA
1 AAAATAAAAAAAAAATTTTAA
8539048 AAAATTAAAAAAAAAATTTTA
1 AAAA-TAAAAAAAAAATTTTA
8539069 CCTGAATCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAAAAAAAAATTTTAA
Found at i:8541528 original size:16 final size:16
Alignment explanation
Indices: 8541507--8541558 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
8541497 TTTACAATTC
8541507 ATTCCTTTATATATTA
1 ATTCCTTTATATATTA
8541523 ATTCCTTTGTATATATTA
1 ATTCC-TT-TATATATTA
* * *
8541541 ATTTCTTTGTATGTTA
1 ATTCCTTTATATATTA
8541557 AT
1 AT
8541559 AACTTCAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 14 0.45
17 4 0.13
18 13 0.42
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.58
Consensus pattern (16 bp):
ATTCCTTTATATATTA
Found at i:8541537 original size:18 final size:18
Alignment explanation
Indices: 8541514--8541552 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
8541504 TTCATTCCTT
8541514 TATATATTAATTCCTTTG
1 TATATATTAATTCCTTTG
*
8541532 TATATATTAATTTCTTTG
1 TATATATTAATTCCTTTG
8541550 TAT
1 TAT
8541553 GTTAATAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (18 bp):
TATATATTAATTCCTTTG
Found at i:8542894 original size:3 final size:3
Alignment explanation
Indices: 8542886--8542920 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8542876 TAACATCAAT
8542886 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8542921 TGCCAATGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8543346 original size:21 final size:19
Alignment explanation
Indices: 8543296--8543333 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8543286 AATATTATTT
8543296 TTTAAA-ATTATATTTATA
1 TTTAAATATTATATTTATA
8543314 TTTAAATATTATATTTATA
1 TTTAAATATTATATTTATA
8543333 T
1 T
8543334 AATTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTAAATATTATATTTATA
Found at i:8544376 original size:16 final size:16
Alignment explanation
Indices: 8544355--8544387 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8544345 TTCTAACCTC
8544355 TCTCATTTTATAATTT
1 TCTCATTTTATAATTT
8544371 TCTCATTTTATAATTT
1 TCTCATTTTATAATTT
8544387 T
1 T
8544388 ATTTTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (16 bp):
TCTCATTTTATAATTT
Found at i:8544538 original size:23 final size:22
Alignment explanation
Indices: 8544511--8544558 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
8544501 GCACTTGACG
8544511 TGCCCACCAATCCATCTCACTTA
1 TGCCCACC-ATCCATCTCACTTA
*
8544534 TG--C-CCATTCATCTCACTTA
1 TGCCCACCATCCATCTCACTTA
8544553 TGCCCA
1 TGCCCA
8544559 TTCTTAGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 7
0.72 0.03 0.24
Matches are distributed among these distances:
19 15 0.71
20 2 0.10
21 2 0.10
23 2 0.10
ACGTcount: A:0.23, C:0.42, G:0.06, T:0.29
Consensus pattern (22 bp):
TGCCCACCATCCATCTCACTTA
Found at i:8544547 original size:19 final size:19
Alignment explanation
Indices: 8544523--8544561 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8544513 CCCACCAATC
8544523 CATCTCACTTATGCCCATT
1 CATCTCACTTATGCCCATT
8544542 CATCTCACTTATGCCCATT
1 CATCTCACTTATGCCCATT
8544561 C
1 C
8544562 TTAGCCTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.38, G:0.05, T:0.36
Consensus pattern (19 bp):
CATCTCACTTATGCCCATT
Found at i:8545494 original size:336 final size:333
Alignment explanation
Indices: 8544845--8545513 Score: 1142
Period size: 336 Copynumber: 2.0 Consensus size: 333
8544835 AAATTTTGAG
* * *
8544845 GACGATAAATTTAAAAACTAAATCTTTTCCTCCTCTAATCAACTGACTCCTCAAAAGAGCTTCTA
1 GACGACAAATTTAAAAACTAAAACTTTTCCTCCTCTAATCAACTGACTCATCAAAAGAGCTTCTA
8544910 GTAAGAAATTCAAAAAGTTTACTGAAACAAATCATTTTTGGCCGATGCTTTGCTTACTCATCCAT
66 GTAAGAAATTCAAAAAGTTTACTGAAACAAATCATTTTTGGCCGATGCTTTGCTTACTCATCCAT
* *
8544975 CACATCCCAACTGTTTCTCGTTCCGAAAAAGCCTCGTTTTCTTTTCTGACGTGGCCCGAATATTC
131 CACATCCCAACTGTTTCTCGTACCGAAAAAGCCTCGTTTTCTTTTCTGACGCGGCCCGAATATTC
8545040 TCTACCACATAACCAATTGTTATCTGCCATGTCACTACACATTCATTTCTTTATATTGTGTGTGC
196 TCTACCACATAACCAATTGTTATCTGCCATGTCACTACACATTCATTTCTTTATATTGTGTGTGC
* * ** *
8545105 AATCGCCACTGTCGCCTTTAAAACCCCAGCTTTATCACTTTCACAAGCCTCCTCTTCTTCAATTT
261 AATAGCCACTCTCGCCTTTAAAACCCCAGCTAAATCACCTTCACAAGCCTCCTCTTCTTCAATTT
*
8545170 CAAGTCTC
326 CAACTCTC
*
8545178 GACGACAAATTTAAAAACTAAACACTTTTCCTCCCTCTGATCAACTGACTCATCAAAAGAGCTTC
1 GACGACAAATTTAAAAACTAAA-ACTTTTCCT-CCTCTAATCAACTGACTCATCAAAAGAGCTTC
* *
8545243 TATTAAGTAATTCAAAAAGTTTACTGAAACAAATCATTTTTGGCCGATGCTTTGCTTACTCATCC
64 TAGTAAGAAATTCAAAAAGTTTACTGAAACAAATCATTTTTGGCCGATGCTTTGCTTACTCATCC
*
8545308 ATCCCATCCCAATCTGTTTCTCGTACCGAAAAAGCCTCGTTTTCTTTTCTGACGCGGCCCGAATA
129 ATCACATCCCAA-CTGTTTCTCGTACCGAAAAAGCCTCGTTTTCTTTTCTGACGCGGCCCGAATA
*
8545373 TTCTCTACCACATGACCAATTGTTATCTGCCATGTCACTACATC-TTCATTTCTTTATATTGTGT
193 TTCTCTACCACATAACCAATTGTTATCTGCCATGTCACTACA-CATTCATTTCTTTATATTGTGT
*
8545437 GTGCAATAGCCACTCTCGCCTTTAAAACCCCAGCTAAATCACCTTCGCAAGCCTCCTCTTCTTCA
257 GTGCAATAGCCACTCTCGCCTTTAAAACCCCAGCTAAATCACCTTCACAAGCCTCCTCTTCTTCA
8545502 ATTTCAACTCTC
322 ATTTCAACTCTC
8545514 TTATCTCTTT
Statistics
Matches: 315, Mismatches: 17, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
333 21 0.07
334 8 0.03
335 104 0.33
336 181 0.57
337 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.34
Consensus pattern (333 bp):
GACGACAAATTTAAAAACTAAAACTTTTCCTCCTCTAATCAACTGACTCATCAAAAGAGCTTCTA
GTAAGAAATTCAAAAAGTTTACTGAAACAAATCATTTTTGGCCGATGCTTTGCTTACTCATCCAT
CACATCCCAACTGTTTCTCGTACCGAAAAAGCCTCGTTTTCTTTTCTGACGCGGCCCGAATATTC
TCTACCACATAACCAATTGTTATCTGCCATGTCACTACACATTCATTTCTTTATATTGTGTGTGC
AATAGCCACTCTCGCCTTTAAAACCCCAGCTAAATCACCTTCACAAGCCTCCTCTTCTTCAATTT
CAACTCTC
Found at i:8547112 original size:112 final size:112
Alignment explanation
Indices: 8546924--8547129 Score: 310
Period size: 112 Copynumber: 1.8 Consensus size: 112
8546914 GCATAAAAGG
*
8546924 TTTTTATAGAAGTTAAAATATAAAAATAATATTAATTTGAAATTTTGAAAAGAGAATAGTATATT
1 TTTTTATAGAAGTTAAAATATAAAAATAATATTAATTTGAAATTTTAAAAAGAGAATAGTATATT
* *
8546989 TAGATGAACGATAATATTGATTTTGATGAGATTTTTAATATAAAATT
66 TAGATGAACGATAATAATGATTTCGATGAGATTTTTAATATAAAATT
* *
8547036 TTTTTATAGAAGTTAAAATATAAAAATAATGTTAGTTTGAAATTTTAAAAAGAGAAT-G-ATGCA
1 TTTTTATAGAAGTTAAAATATAAAAATAATATTAATTTGAAATTTTAAAAAGAGAATAGTAT--A
*
8547099 TTT-GAATGGACGATAATAATGATTTCGATGA
64 TTTAG-ATGAACGATAATAATGATTTCGATGA
8547130 AATTAAAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
110 2 0.02
111 2 0.02
112 81 0.95
ACGTcount: A:0.45, C:0.02, G:0.15, T:0.39
Consensus pattern (112 bp):
TTTTTATAGAAGTTAAAATATAAAAATAATATTAATTTGAAATTTTAAAAAGAGAATAGTATATT
TAGATGAACGATAATAATGATTTCGATGAGATTTTTAATATAAAATT
Found at i:8554525 original size:16 final size:16
Alignment explanation
Indices: 8554504--8554535 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8554494 AAAATGCAAC
8554504 CTTACATTTAGAAAGG
1 CTTACATTTAGAAAGG
8554520 CTTACATTTAGAAAGG
1 CTTACATTTAGAAAGG
8554536 TAAAAAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
CTTACATTTAGAAAGG
Found at i:8555999 original size:22 final size:22
Alignment explanation
Indices: 8555974--8556015 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8555964 GGTGGCTCTT
8555974 GGAATAAAGAACTACATGGAGA
1 GGAATAAAGAACTACATGGAGA
*
8555996 GGAATTAAGAACTACATGGA
1 GGAATAAAGAACTACATGGA
8556016 ATGGAGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.10, G:0.26, T:0.17
Consensus pattern (22 bp):
GGAATAAAGAACTACATGGAGA
Found at i:8556678 original size:144 final size:143
Alignment explanation
Indices: 8556468--8556749 Score: 365
Period size: 144 Copynumber: 2.0 Consensus size: 143
8556458 AATACCTAAC
* * * * *
8556468 TATGATTTAGAGCTTTTCGTGAAAAATCAACCTCGAAAATGCCAAACTACGAAAATACCTTTAAA
1 TATGATTTAAAGATTTTCGTGAAAAATAAAACTCGAAAATGCCAAACTACGAAAATACCTTCAAA
* * *
8556533 -GGTAATTTTGGTAATTTTACTCATTT-TG-GGTGCAATCAAAATTTTTAATGCATCAAAATTCA
66 GGGT-ATTTTGGTAATTTCACT-ATTTCAGAGATGCAATCAAAATTTTTAATGCAT-AAAATTCA
8556595 TGGAATAATATAAAAA
128 TGGAATAATATAAAAA
* * * *
8556611 TATGATTTAAAGATTTTACGTGAAAAATAAAATTCGAGAAA-GTCAAATTACGAAAATATCTTCA
1 TATGATTTAAAGATTTT-CGTGAAAAATAAAACTCGA-AAATGCCAAACTACGAAAATACCTTCA
*
8556675 AAGGGTATTTTGGTAATTTCACTATTTCAGAGATGCAATCAAAGTTTTTAATGCATAAAATTCAT
64 AAGGGTATTTTGGTAATTTCACTATTTCAGAGATGCAATCAAAATTTTTAATGCATAAAATTCAT
*
8556740 GGACTAATAT
129 GGAATAATAT
8556750 TAAGGCTTGA
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
143 19 0.16
144 72 0.60
145 29 0.24
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (143 bp):
TATGATTTAAAGATTTTCGTGAAAAATAAAACTCGAAAATGCCAAACTACGAAAATACCTTCAAA
GGGTATTTTGGTAATTTCACTATTTCAGAGATGCAATCAAAATTTTTAATGCATAAAATTCATGG
AATAATATAAAAA
Found at i:8557496 original size:45 final size:46
Alignment explanation
Indices: 8557427--8557535 Score: 168
Period size: 45 Copynumber: 2.4 Consensus size: 46
8557417 CAAAGGTTCC
*
8557427 ACAACTTTTGAAAATAAATCTAAAAACTCATCTTATTAGAAG-CTCT
1 ACAACTTTTGAAAATAAATCTAAAAACTCATCTCATTA-AAGCCTCT
* *
8557473 ACAAC-TTTAAAAATAAATCTAAAAACTCCTCTCATTAAAGCCTCT
1 ACAACTTTTGAAAATAAATCTAAAAACTCATCTCATTAAAGCCTCT
8557518 ACAACTTTTGAAAATAAA
1 ACAACTTTTGAAAATAAA
8557536 GACAATAACT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
44 3 0.05
45 38 0.67
46 16 0.28
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.30
Consensus pattern (46 bp):
ACAACTTTTGAAAATAAATCTAAAAACTCATCTCATTAAAGCCTCT
Found at i:8557972 original size:40 final size:40
Alignment explanation
Indices: 8557923--8558013 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
8557913 CTTGGAGGTT
* * *
8557923 TTACAAATCTTGACACTTAAATAGA-TTCAGCTTGGAAGAC
1 TTACGAATCTTGACACTAAAATAAACTT-AGCTTGGAAGAC
** *
8557963 TTACGAATCTTGATGCTAAAATAAACTTTGCTTGGAAGAC
1 TTACGAATCTTGACACTAAAATAAACTTAGCTTGGAAGAC
*
8558003 TTATGAATCTT
1 TTACGAATCTT
8558014 TCTCATCTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (40 bp):
TTACGAATCTTGACACTAAAATAAACTTAGCTTGGAAGAC
Found at i:8558241 original size:84 final size:84
Alignment explanation
Indices: 8558051--8558267 Score: 226
Period size: 84 Copynumber: 2.6 Consensus size: 84
8558041 ATTATGCTTA
* *
8558051 ACTTAGAGATTATGCTAGAGGAT-TTATAAATCTTGACATTATAAATAGATTTAACTTAGAAGGA
1 ACTTAGAGATTATGCTAGAGG-TCTTATAAATCTTGACACTATAAATAGATTCAACTTAGAAGGA
8558115 TAACAAATCTTACTCAGAAG
65 TAACAAATCTTACTCAGAAG
* ** *
8558135 ACTTAGGGATTACACTTGGAGGTCTTATAAATCTTGACACTA-AAATAGATTCAACTT-GAAAGG
1 ACTTAGAGATTATGC-TAGAGGTCTTATAAATCTTGACACTATAAATAGATTCAACTTAG-AAGG
* * * *
8558198 CTTACAAATCTTGCATGA-AAG
64 ATAACAAATCTTAC-TCAGAAG
* * * *
8558219 ACTTAAAGATTATGTCTAGAGGTCTTAAAAATTTTGACATCTATGAATA
1 ACTTAGAGATTATG-CTAGAGGTCTTATAAATCTTGACA-CTATAAATA
8558268 CTCTTCTAAA
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
83 1 0.01
84 75 0.69
85 28 0.26
86 4 0.04
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.32
Consensus pattern (84 bp):
ACTTAGAGATTATGCTAGAGGTCTTATAAATCTTGACACTATAAATAGATTCAACTTAGAAGGAT
AACAAATCTTACTCAGAAG
Found at i:8561332 original size:75 final size:73
Alignment explanation
Indices: 8561198--8561335 Score: 188
Period size: 75 Copynumber: 1.9 Consensus size: 73
8561188 TTTGGGTGAT
**
8561198 TTTACTAGTATTTCTTTGGTGGTTTTGCTATTTTTTTCCTGATATTTTTTTGGTATGATTATAGG
1 TTTACTAGTATTTCTTTGGTGGTTTTGCTATTTTTTTCCTGATATTGCTTTGGTATGATTATAGG
8561263 CTGGTAAA
66 CTGGTAAA
* ** *
8561271 TTTACTAGTTTTTCTTTGGT-GTTTTGCTAGAATTTTTTTGTTGATATTGCTTTGGTGTGATTAT
1 TTTACTAGTATTTCTTTGGTGGTTTTGCT---ATTTTTTTCCTGATATTGCTTTGGTATGATTAT
8561335 A
63 A
8561336 AGACACTGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
72 8 0.14
73 19 0.34
75 29 0.52
ACGTcount: A:0.17, C:0.07, G:0.20, T:0.57
Consensus pattern (73 bp):
TTTACTAGTATTTCTTTGGTGGTTTTGCTATTTTTTTCCTGATATTGCTTTGGTATGATTATAGG
CTGGTAAA
Found at i:8565247 original size:18 final size:18
Alignment explanation
Indices: 8565221--8565259 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8565211 TCCCACCCTA
*
8565221 ACCACATCTTCATTTCTT
1 ACCACATCTTCATTTCCT
* *
8565239 ACCATATCTTTATTTCCT
1 ACCACATCTTCATTTCCT
8565257 ACC
1 ACC
8565260 TTTACTACCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.44
Consensus pattern (18 bp):
ACCACATCTTCATTTCCT
Done.