Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 74 of 120
Found at i:9147932 original size:145 final size:146
Alignment explanation
Indices: 9147750--9148078 Score: 392
Period size: 145 Copynumber: 2.3 Consensus size: 146
9147740 GGGGAATTAC
* * *
9147750 AAAATTACTAAAAT-TTCTTTT-AGGGGTATTTTTGTAATTTAACT-TTC-TCGAGCTCAAATTT
1 AAAATTACTAAAATATCCTTTTAAGGAGTATTTTCGTAATTT-ACTCTTCAT-GAGCTCAAATTT
* *
9147811 TCATAAAACTTTTCAAATCTTAATTTCATAATATTTCAT-AATTTTTTG-TGCATTTGAAGTCAC
64 TCATAAAACTTTTCAAATCTTAATTTCATAATATTTCATGAA--TTTTGATGCATTCGAAATCAC
* *
9147874 AGTAATAC-CTCAAGAAGTGT
127 AGCAATACTC-CAAGAAGTAT
* * *
9147894 AAAATTAAC-AAAATA-CCTTTTAAGGAGTATTTTCGTAATTTAGTCTTCATGAGCTTAGATTTT
1 AAAATT-ACTAAAATATCCTTTTAAGGAGTATTTTCGTAATTTACTCTTCATGAGCTCAAATTTT
* * *
9147957 CATGAAACTTTTTAAATCTTAATTTCATAATATTTCATGAATTTTGATGCATTCGAAATTACAGC
65 CATAAAACTTTTCAAATCTTAATTTCATAATATTTCATGAATTTTGATGCATTCGAAATCACAGC
*
9148022 AATACTCCAAGAGGTAT
130 AATACTCCAAGAAGTAT
*
9148039 AAAATTACTAAAATATCC-TTTAA-CAGTATTTTCGTAATTT
1 AAAATTACTAAAATATCCTTTTAAGGAGTATTTTCGTAATTT
9148079 TACCTTAACA
Statistics
Matches: 160, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
144 41 0.26
145 113 0.71
146 6 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.41
Consensus pattern (146 bp):
AAAATTACTAAAATATCCTTTTAAGGAGTATTTTCGTAATTTACTCTTCATGAGCTCAAATTTTC
ATAAAACTTTTCAAATCTTAATTTCATAATATTTCATGAATTTTGATGCATTCGAAATCACAGCA
ATACTCCAAGAAGTAT
Found at i:9148398 original size:22 final size:22
Alignment explanation
Indices: 9148370--9148413 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9148360 CTTTGGCCCT
9148370 TGGATGAGGTTTGATCCAAGGG
1 TGGATGAGGTTTGATCCAAGGG
9148392 TGGATGAGGTTTGATCCAAGGG
1 TGGATGAGGTTTGATCCAAGGG
9148414 CCTATATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.41, T:0.27
Consensus pattern (22 bp):
TGGATGAGGTTTGATCCAAGGG
Found at i:9150006 original size:105 final size:106
Alignment explanation
Indices: 9149913--9150127 Score: 249
Period size: 105 Copynumber: 2.0 Consensus size: 106
9149903 TTATTAAAAT
* * * * *
9149913 AAAAAAGCCATATATATG-ACAAAACTAGAGCTTTGT-TTAAAATGGGTGGAGACTACACGGTTG
1 AAAAAAGCCATATA-AGGAAAAAAACGA-AGCTTTGTATAAAAAGGGGTGGAGACTACACGGTTG
*
9149976 GCTTGGTTTTG-TGAGATTGAAGAATAGAAAAAGTAATAAAGA
64 GCATGGTTTTGTTGAGATTGAAGAATAGAAAAAGTAATAAAGA
* * * *
9150018 AAGAAAGCCATATAAGGAAAAAAACGAAGCTTTGTATAAAAAGGGGTGGGGACTATACGTTTGGC
1 AAAAAAGCCATATAAGGAAAAAAACGAAGCTTTGTATAAAAAGGGGTGGAGACTACACGGTTGGC
* * *
9150083 ATGGTTTTGTTTTAGATTGAAGAATAGAGGAAA-TATTAAAGA
66 ATGGTTTTG-TTGAGATTGAAGAATAGA-AAAAGTAATAAAGA
9150125 AAA
1 AAA
9150128 GAAGGTCATA
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
104 10 0.11
105 52 0.57
107 26 0.29
108 3 0.03
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (106 bp):
AAAAAAGCCATATAAGGAAAAAAACGAAGCTTTGTATAAAAAGGGGTGGAGACTACACGGTTGGC
ATGGTTTTGTTGAGATTGAAGAATAGAAAAAGTAATAAAGA
Found at i:9162867 original size:2 final size:2
Alignment explanation
Indices: 9162860--9162961 Score: 102
Period size: 2 Copynumber: 52.5 Consensus size: 2
9162850 GCAAGTCTTT
9162860 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
9162901 TT TA TA TT TA TA TT TA TA TT TA TA T- TT TA T- TA GA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
9162941 TA TT TA TA TT TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
9162962 TTTATTAGAG
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
1 3 0.04
2 77 0.96
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (2 bp):
TA
Found at i:9162962 original size:6 final size:6
Alignment explanation
Indices: 9162858--9162967 Score: 125
Period size: 6 Copynumber: 18.3 Consensus size: 6
9162848 GCGCAAGTCT
* * * * *
9162858 TTTATA TATATA TATATA TATATA TATATA TATATA TATTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA T-TTATA TTTATA
* *
9162907 TTTATA TTTATA TTTATA TTT-TA TTAGATA TATATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TT-TATA TTTATA TTTATA TTTATA
9162955 TTTATA TTT-TA TT
1 TTTATA TTTATA TT
9162968 AGAGTATTGA
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
5 8 0.08
6 79 0.83
7 8 0.08
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (6 bp):
TTTATA
Found at i:9163306 original size:2 final size:2
Alignment explanation
Indices: 9163301--9163332 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9163291 TTTCAGTAGA
*
9163301 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9163333 TACGATTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9163537 original size:26 final size:26
Alignment explanation
Indices: 9163504--9163554 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
9163494 AACTGTACAA
* *
9163504 TTGAATCCTAATA-TAAAAAGTAAAAT
1 TTGAATCCAAAGATTAAAAA-TAAAAT
9163530 TTGAATCCAAAGATTAAAAATAAAA
1 TTGAATCCAAAGATTAAAAATAAAA
9163555 AATTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (26 bp):
TTGAATCCAAAGATTAAAAATAAAAT
Found at i:9163583 original size:6 final size:6
Alignment explanation
Indices: 9163568--9163615 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
9163558 TTTTAATATG
* * * * *
9163568 ATTTTA ATTTTG ATTTTA ATTATA ATTTTG ATTTTA TTTTTA GTTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
9163616 GTTTGGTTAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (6 bp):
ATTTTA
Found at i:9163583 original size:24 final size:24
Alignment explanation
Indices: 9163556--9163609 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
9163546 AAAATAAAAA
*
9163556 ATTTTTAA-TATGATTTTAATTTT
1 ATTTTTAATTATAATTTTAATTTT
*
9163579 GA-TTTTAATTATAATTTTGATTTT
1 -ATTTTTAATTATAATTTTAATTTT
9163603 ATTTTTA
1 ATTTTTA
9163610 GTTTTAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATTTTTAATTATAATTTTAATTTT
Found at i:9163614 original size:18 final size:18
Alignment explanation
Indices: 9163568--9163614 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
9163558 TTTTAATATG
9163568 ATTTTAATTTTGATTTTA
1 ATTTTAATTTTGATTTTA
*
9163586 ATTATAATTTTGATTTTA
1 ATTTTAATTTTGATTTTA
* *
9163604 TTTTTAGTTTT
1 ATTTTAATTTT
9163615 AGTTTGGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (18 bp):
ATTTTAATTTTGATTTTA
Found at i:9165102 original size:14 final size:14
Alignment explanation
Indices: 9165083--9165112 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9165073 CTTATATATA
9165083 TTTGCATGATTAAT
1 TTTGCATGATTAAT
*
9165097 TTTGCATGATTTAT
1 TTTGCATGATTAAT
9165111 TT
1 TT
9165113 AATTACATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.57
Consensus pattern (14 bp):
TTTGCATGATTAAT
Found at i:9165133 original size:24 final size:24
Alignment explanation
Indices: 9165108--9165311 Score: 144
Period size: 23 Copynumber: 8.8 Consensus size: 24
9165098 TTGCATGATT
*
9165108 TATTTAATTACAT-A-T-TTATTA
1 TATTTAATTACATGATTATTAATA
9165129 -ATTTAATTACATGATTATTAATA
1 TATTTAATTACATGATTATTAATA
*
9165152 TATTTATTTACATGATTATTTAATA
1 TATTTAATTACATGATTA-TTAATA
*** *
9165177 TATTT-ATGTGTTTGTATGTTGTTAATA
1 TATTTAAT-TACATG-A--TTATTAATA
* *
9165204 TATTTATTTACAT-A--ATTATTA
1 TATTTAATTACATGATTATTAATA
*
9165225 -ATTTAATTATATGATTATTAATA
1 TATTTAATTACATGATTATTAATA
* *
9165248 TA--TATTTACATTATTATTAATA
1 TATTTAATTACATGATTATTAATA
* *
9165270 TATTTAAATA-TTGATTATTAATA
1 TATTTAATTACATGATTATTAATA
* *
9165293 TATTTATTTATATGATTAT
1 TATTTAATTACATGATTAT
9165312 ATTTTATTGT
Statistics
Matches: 140, Mismatches: 26, Indels: 31
0.71 0.13 0.16
Matches are distributed among these distances:
20 22 0.16
21 7 0.05
22 20 0.14
23 30 0.21
24 29 0.21
25 15 0.11
26 1 0.01
27 13 0.09
28 3 0.02
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTTAATTACATGATTATTAATA
Found at i:9165134 original size:20 final size:20
Alignment explanation
Indices: 9165109--9165150 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
9165099 TGCATGATTT
9165109 ATTTAATTACAT-ATTTATTA
1 ATTTAATTACATGA-TTATTA
9165129 ATTTAATTACATGATTATTA
1 ATTTAATTACATGATTATTA
9165149 AT
1 AT
9165151 ATATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTAATTACATGATTATTA
Found at i:9165248 original size:12 final size:11
Alignment explanation
Indices: 9165198--9165338 Score: 70
Period size: 11 Copynumber: 12.9 Consensus size: 11
9165188 TTGTATGTTG
9165198 TTAATATATTTA
1 TTAATATA-TTA
9165210 TTTACATA-ATTA
1 -TTA-ATATATTA
*
9165222 TTAAT-T-TAA
1 TTAATATATTA
9165231 TT-ATATGATTA
1 TTAATAT-ATTA
9165242 TTAATATA-TA
1 TTAATATATTA
9165252 TTTACAT-TATTA
1 -TTA-ATATATTA
9165264 TTAATATATT-
1 TTAATATATTA
*
9165274 TAAATATTGATTA
1 TTAATA-T-ATTA
9165287 TTAATATATTTA
1 TTAATATA-TTA
*
9165299 TT--TATATGA
1 TTAATATATTA
*
9165308 TT-ATATTTTA
1 TTAATATATTA
*
9165318 TT-GTATGATTA
1 TTAATAT-ATTA
9165329 TTAATATATT
1 TTAATATATT
9165339 TATTTTTGTG
Statistics
Matches: 101, Mismatches: 10, Indels: 36
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.02
9 9 0.09
10 25 0.25
11 30 0.30
12 23 0.23
13 9 0.09
14 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (11 bp):
TTAATATATTA
Found at i:9165264 original size:42 final size:43
Alignment explanation
Indices: 9165198--9165343 Score: 154
Period size: 42 Copynumber: 3.3 Consensus size: 43
9165188 TTGTATGTTG
9165198 TTAATATATTTATTTACATAATTATTAATTTAATTATATGATTA
1 TTAATATA-TTATTTACATAATTATTAATTTAATTATATGATTA
* * *
9165242 TTAATATA-TATTTACATTATTATTAATATATTTAAATATTGATTA
1 TTAATATATTATTTACATAATTATTAATTTAATT--ATA-TGATTA
* * * *
9165287 TTAATATATTTATTTATATGATTA-T-ATTTTATTGTATGATTA
1 TTAATATA-TTATTTACATAATTATTAATTTAATTATATGATTA
9165329 TTAATATATTTATTT
1 TTAATATA-TTATTT
9165344 TTGTGATTAT
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
42 43 0.49
43 2 0.02
44 11 0.12
45 19 0.22
46 1 0.01
47 12 0.14
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (43 bp):
TTAATATATTATTTACATAATTATTAATTTAATTATATGATTA
Found at i:9165314 original size:18 final size:18
Alignment explanation
Indices: 9165291--9165385 Score: 57
Period size: 18 Copynumber: 4.9 Consensus size: 18
9165281 TGATTATTAA
9165291 TATATTTATTTATATGAT
1 TATATTTATTTATATGAT
*
9165309 TATATTTTATTGTATGATTATT
1 TATA-TTTATT-TAT-ATGA-T
* *
9165331 AATATATTTATTTTTGTGAT
1 --TATATTTATTTATATGAT
**
9165351 TATATTTGA-TTGCATGAT
1 TATATTT-ATTTATATGAT
* *
9165369 TATATATATTTGTATGA
1 TATATTTATTTATATGA
9165386 ATGATTTTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
17 1 0.02
18 30 0.50
19 7 0.12
20 4 0.07
21 5 0.08
22 3 0.05
23 6 0.10
24 4 0.07
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.58
Consensus pattern (18 bp):
TATATTTATTTATATGAT
Found at i:9165351 original size:42 final size:42
Alignment explanation
Indices: 9165281--9165379 Score: 148
Period size: 42 Copynumber: 2.4 Consensus size: 42
9165271 ATTTAAATAT
* *
9165281 TGATTATTAATATATTTATTTATATGATTATATTTTATTGTA
1 TGATTATTAATATATTTATTTATATGATTATATTTGATTGCA
* *
9165323 TGATTATTAATATATTTATTTTTGTGATTATATTTGATTGCA
1 TGATTATTAATATATTTATTTATATGATTATATTTGATTGCA
9165365 TGATTA-T-ATATATTT
1 TGATTATTAATATATTT
9165380 GTATGAATGA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 8 0.15
41 1 0.02
42 44 0.83
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (42 bp):
TGATTATTAATATATTTATTTATATGATTATATTTGATTGCA
Found at i:9165469 original size:35 final size:35
Alignment explanation
Indices: 9165420--9165495 Score: 127
Period size: 35 Copynumber: 2.2 Consensus size: 35
9165410 TTGCATAATA
*
9165420 ATTT-TTGTATGGTATGATTTTACATTATTGCATG
1 ATTTATTGTAAGGTATGATTTTACATTATTGCATG
*
9165454 ATTTATTGTAAGGTATGATTTTATATTATTGCATG
1 ATTTATTGTAAGGTATGATTTTACATTATTGCATG
9165489 ATTTATT
1 ATTTATT
9165496 ACATAATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 4 0.10
35 35 0.90
ACGTcount: A:0.26, C:0.04, G:0.16, T:0.54
Consensus pattern (35 bp):
ATTTATTGTAAGGTATGATTTTACATTATTGCATG
Found at i:9165493 original size:17 final size:18
Alignment explanation
Indices: 9165433--9165492 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
9165423 TTTGTATGGT
*
9165433 ATGATTTTACATTATTGC
1 ATGATTTTATATTATTGC
** *
9165451 ATGA-TTTAT-TGTAAGGT
1 ATGATTTTATAT-TATTGC
9165468 ATGATTTTATATTATTGC
1 ATGATTTTATATTATTGC
9165486 ATGATTT
1 ATGATTT
9165493 ATTACATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
16 1 0.03
17 11 0.34
18 19 0.59
19 1 0.03
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.52
Consensus pattern (18 bp):
ATGATTTTATATTATTGC
Found at i:9165510 original size:35 final size:34
Alignment explanation
Indices: 9165431--9165524 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 34
9165421 TTTTTGTATG
* * *
9165431 GTATGATTTTACATTATTGCATGATTTATTGTAA
1 GTATAATTTTATATTATTGCATGATTTATTATAA
*
9165465 GGTATGATTTTATATTATTGCATGATTTATTACATAA
1 -GTATAATTTTATATTATTGCATGATTTATT--ATAA
9165502 -TATAATTTTAT-TTATTGCATGAT
1 GTATAATTTTATATTATTGCATGAT
9165525 ATAATTTTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
34 12 0.22
35 39 0.72
37 3 0.06
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (34 bp):
GTATAATTTTATATTATTGCATGATTTATTATAA
Found at i:9165514 original size:22 final size:22
Alignment explanation
Indices: 9165489--9165547 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 22
9165479 TTATTGCATG
9165489 ATTTATTACATAATATAATTTT
1 ATTTATTACATAATATAATTTT
* *
9165511 ATTTATTGCATGATATAATTTT
1 ATTTATTACATAATATAATTTT
9165533 ATATTATTACATAAT
1 AT-TTATTACATAAT
9165548 TTATTGCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (22 bp):
ATTTATTACATAATATAATTTT
Found at i:9172736 original size:14 final size:14
Alignment explanation
Indices: 9172717--9172744 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9172707 TTTCATCAGC
9172717 ATTCAGCATTAACT
1 ATTCAGCATTAACT
9172731 ATTCAGCATTAACT
1 ATTCAGCATTAACT
9172745 GTAAGCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
ATTCAGCATTAACT
Found at i:9179530 original size:65 final size:64
Alignment explanation
Indices: 9179376--9179535 Score: 153
Period size: 65 Copynumber: 2.5 Consensus size: 64
9179366 AGGAATGCAT
* * * **
9179376 TTTTGCCCAAAAATGCCTTTAATAATCCATACAAAAAGTTTTGTTGAAAGGATTATTGAAGGCA
1 TTTTGACCAAAAATACCTTCAATAATCCATACAAAAAGTTTTGTTGAAAGGATTATAAAAGGCA
* * * * * *
9179440 TTTTTGATCAAAAACATCTTCAATAATTCATACAAAAATTTTTGTT-AAGGTGATTATAAAATGT
1 -TTTTGACCAAAAATACCTTCAATAATCCATACAAAAAGTTTTGTTGAAAG-GATTATAAAA-G-
9179504 GC-
62 GCA
* *
9179506 TTTTGGCCAAAAATACCTTGAATAATCCAT
1 TTTTGACCAAAAATACCTTCAATAATCCAT
9179536 GAATTATTCA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
64 3 0.04
65 69 0.92
66 1 0.01
67 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (64 bp):
TTTTGACCAAAAATACCTTCAATAATCCATACAAAAAGTTTTGTTGAAAGGATTATAAAAGGCA
Found at i:9179845 original size:12 final size:12
Alignment explanation
Indices: 9179828--9179882 Score: 101
Period size: 12 Copynumber: 4.6 Consensus size: 12
9179818 TCATATAAAT
*
9179828 ATATTCATATAA
1 ATATTCACATAA
9179840 ATATTCACATAA
1 ATATTCACATAA
9179852 ATATTCACATAA
1 ATATTCACATAA
9179864 ATATTCACATAA
1 ATATTCACATAA
9179876 ATATTCA
1 ATATTCA
9179883 ATTTTTTCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (12 bp):
ATATTCACATAA
Found at i:9180218 original size:24 final size:25
Alignment explanation
Indices: 9180177--9180223 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
9180167 TCATATAAGC
9180177 TACCAATTAATATAAAACAAATATA
1 TACCAATTAATATAAAACAAATATA
* *
9180202 TACCAA-TAATATTAAACCAATA
1 TACCAATTAATATAAAACAAATA
9180224 CCCCAATCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (25 bp):
TACCAATTAATATAAAACAAATATA
Found at i:9184926 original size:296 final size:295
Alignment explanation
Indices: 9183810--9184917 Score: 1176
Period size: 296 Copynumber: 3.8 Consensus size: 295
9183800 TATTCAAGGC
* * * * * * * * *
9183810 ATAATTCATGGGTTATTGAAGGCATTTTTGACGATAAATGCCTTAAATAGTCCATGAATTATTCA
1 ATAATTCATGGGTTATAGAAAGCATTTTTGGCCAAAAATACCTTGAATAATCTATGAATTATTCA
** * **
9183875 AGATATTTTTAGCCTAAAAAT-CCTTTAATAACCCCATTCAATATTTTGTAAGGGATTATTCAAG
66 AGGCATTTTTAGCC-AAAAATGCCTTTAATAATCTTATTCAATATTTTGTAAGGGATTATTCAAG
* * *
9183939 GCATTTTCTAGCTAAAAA---CTTCAATTATCCCATCATAAAAATTAAAGGGGATTATTCAAGG-
130 GCATTTTCTGGCTAAAAATGCCTTCAATAATCCCATCATAAAAATTAAAAGGGATTATTCAAGGC
* * * *
9184000 AGTTTTCTTAGTAAAAACGCCTTGAATATTTCAAAAAAAATGCTAGGATTATTGAATGCATTTTT
195 A-TTTTCTGAGCAAAAATGCCTTGAATA-TTCAAAAAAAATGCTAGGATTATTGAA-GGA--TTT
* *
9184065 TTTTTTTACAAAAAATGCCTTTAATAATCCCTTTTGAATGA
255 TTTTTTTATAAAAAATGCCTTTAATAATCCCTTTTGAATAA
* * * * *
9184106 ATAATTCGTAGGTTATATAAGGCATTTTTGGCCAAAAATACCTTGAATAATCTATAAATTATTCA
1 ATAATTCATGGGTTATAGAAAGCATTTTTGGCCAAAAATACCTTGAATAATCTATGAATTATTCA
* * * * * * *
9184171 AGGTATTTTTACCCAGAAACGCCTTCAAT-AT-TTCCATTCTATATTTTGTAAGGGATTATTTAA
66 AGGCATTTTTAGCCAAAAATGCCTTTAATAATCTT--ATTCAATATTTTGTAAGGGATTATTCAA
* * *
9184234 AGCATTTTCTGGCTAAAAAATGCCTTCAATAATCCTATCATAAAAATTGAAGAA--AATTATTCA
129 GGCATTTTCTGGCT-AAAAATGCCTTCAATAATCCCATCATAAAAATT-AA-AAGGGATTATTCA
* * * *
9184297 AGGCATTTACTGAGTAAAAATGCCTTGAATATTCCAAAAAAAATGCTATGATTATTAAAGG---T
191 AGGCATTTTCTGAGCAAAAATGCCTTGAATATT-CAAAAAAAATGCTAGGATTATTGAAGGATTT
* * * * * *
9184359 GTTTTTGATAGAAAATGCATTCAATAATCCTTTTTGAATAA
255 TTTTTTTATAAAAAATGCCTTTAATAATCCCTTTTGAATAA
* * * ** *
9184400 ATAATTCACGAGTTATAG-AAG-GTGTTTTGGTTAAAAATGCCTTGAATAATCTATGAATTATTC
1 ATAATTCATGGGTTATAGAAAGCAT-TTTTGGCCAAAAATACCTTGAATAATCTATGAATTATTC
* *
9184463 AAGGCATTTTTAGCAAAAAATG-CTTTCAATAATCTTATTCAA-ATTTTGCAAGGGATTATTCAA
65 AAGGCATTTTTAGCCAAAAATGCCTTT-AATAATCTTATTCAATATTTTGTAAGGGATTATTCAA
* * * *
9184526 GGTATTTTTTTTGCT-AAAATCGTCTTCAATAAT-CCATCATAAAAATTAAAAGGGATTATTCAA
129 GGCA-TTTTCTGGCTAAAAAT-GCCTTCAATAATCCCATCATAAAAATTAAAAGGGATTATTC-A
* * * * * *
9184589 AGTC-TTTT-TTAGGCAAAAATGCTTTGAATATTAAAAAAAAATGTTGGGATTATTGAAGGTATT
191 AGGCATTTTCTGA-GCAAAAATGCCTTGAATATTCAAAAAAAATGCTAGGATTATTGAAGG-ATT
* * * *
9184652 TTTTTTTATATAAAAAATACCTTTAATAATCCCCTCTAAATAA
254 TTTTTTT-TATAAAAAATGCCTTTAATAATCCCTTTTGAATAA
* * *
9184695 ATTATTCGTGGGTTATAGAAAGCATTTTTGGCCAAAAATACCTTGAATAATCTATGAATTGTTCA
1 ATAATTCATGGGTTATAGAAAGCATTTTTGGCCAAAAATACCTTGAATAATCTATGAATTATTCA
*
9184760 TGGCATTTTTAGCCAAAAATGCCTTTAATAATCTTATTCAATATTTTGTAAGGGATTATTCAAGG
66 AGGCATTTTTAGCCAAAAATGCCTTTAATAATCTTATTCAATATTTTGTAAGGGATTATTCAAGG
** * *
9184825 TGTTTTTTGGCTAAAAATGCCTTCAATAATCCCATAATAAAAATTAAAAGGGATTATTCAAGGCA
131 CATTTTCTGGCTAAAAATGCCTTCAATAATCCCATCATAAAAATTAAAAGGGATTATTCAAGGCA
* *
9184890 TTTGCTGGGCAAAAATGCCTTGAATATT
196 TTTTCTGAGCAAAAATGCCTTGAATATT
9184918 TTAAAAAATA
Statistics
Matches: 668, Mismatches: 110, Indels: 67
0.79 0.13 0.08
Matches are distributed among these distances:
289 2 0.00
290 26 0.04
291 46 0.07
292 40 0.06
293 70 0.10
294 55 0.08
295 47 0.07
296 207 0.31
297 87 0.13
298 1 0.00
299 3 0.00
300 80 0.12
301 3 0.00
302 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (295 bp):
ATAATTCATGGGTTATAGAAAGCATTTTTGGCCAAAAATACCTTGAATAATCTATGAATTATTCA
AGGCATTTTTAGCCAAAAATGCCTTTAATAATCTTATTCAATATTTTGTAAGGGATTATTCAAGG
CATTTTCTGGCTAAAAATGCCTTCAATAATCCCATCATAAAAATTAAAAGGGATTATTCAAGGCA
TTTTCTGAGCAAAAATGCCTTGAATATTCAAAAAAAATGCTAGGATTATTGAAGGATTTTTTTTT
TATAAAAAATGCCTTTAATAATCCCTTTTGAATAA
Found at i:9188896 original size:3 final size:3
Alignment explanation
Indices: 9188888--9188936 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
9188878 CATCATAAAC
* *
9188888 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9188936 T
1 T
9188937 TTGGATGCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9188999 original size:18 final size:18
Alignment explanation
Indices: 9188976--9189012 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9188966 TGTTTTATGT
*
9188976 AAAAAAAAATTAATAATA
1 AAAAAAAAAGTAATAATA
*
9188994 AAAAAAAGAGTAATAATA
1 AAAAAAAAAGTAATAATA
9189012 A
1 A
9189013 TAATAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (18 bp):
AAAAAAAAAGTAATAATA
Found at i:9190757 original size:12 final size:12
Alignment explanation
Indices: 9190740--9190773 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
9190730 CTATACTTGA
9190740 TTATTTATTTGT
1 TTATTTATTTGT
*
9190752 TTATTTGTTTGT
1 TTATTTATTTGT
9190764 TTATTTATTT
1 TTATTTATTT
9190774 ATTAACATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (12 bp):
TTATTTATTTGT
Found at i:9197639 original size:18 final size:18
Alignment explanation
Indices: 9197616--9197675 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
9197606 ATTGGTGTTG
9197616 TTTTGATCATCTTTATTT
1 TTTTGATCATCTTTATTT
* ***
9197634 TTTTGATC-TGTGGCTTT
1 TTTTGATCATCTTTATTT
*
9197651 ATCTTGATCATCTTTATTT
1 -TTTTGATCATCTTTATTT
9197670 TTTTGA
1 TTTTGA
9197676 CATGTGATGT
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
17 5 0.17
18 20 0.67
19 5 0.17
ACGTcount: A:0.15, C:0.12, G:0.12, T:0.62
Consensus pattern (18 bp):
TTTTGATCATCTTTATTT
Found at i:9197923 original size:36 final size:35
Alignment explanation
Indices: 9197516--9198637 Score: 324
Period size: 36 Copynumber: 31.4 Consensus size: 35
9197506 GTTATCGTAG
* *
9197516 TCATCTTTATTTTTTGA-TCTATGATATCGTCTCGA
1 TCATCTTTATTTTTTGACT-TATGATGTTGTCTCGA
** * * *
9197551 TCATCTTTATCTTTTCAAC-CATGGTGTTGTC-CCA
1 TCATCTTTAT-TTTTTGACTTATGATGTTGTCTCGA
* * * * * *
9197585 GTCATATTTGTTTTTTCAAC-TATTGGTGTTGTTTTGA
1 -TCATCTTTATTTTTT-GACTTA-TGATGTTGTCTCGA
* * * *
9197622 TCATCTTTATTTTTTTGATCTGT-GGCT-TTATCTTGA
1 TCATCTTTA-TTTTTTGA-CT-TATGATGTTGTCTCGA
* * *
9197658 TCATCTTTATTTTTTTGACATGTGATGTTGTCT-TA
1 TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
*
9197693 GTCATCTTTATTTTCTT-AATT-TGTAGTGTTGTC-CTGA
1 -TCATCTTTATTTT-TTGACTTATG-A-TGTTGTCTC-GA
** * * * *
9197730 TCATCTTTATTTTATCAACTTACGTTGTTATCTCAA
1 TCATCTTTATTTT-TTGACTTATGATGTTGTCTCGA
* * * *
9197766 TCATCTTTTATTTTTTTGACTTACGATTTTGTCCCAA
1 TCATC-TTTA-TTTTTTGACTTATGATGTTGTCTCGA
** * * * * * *
9197803 TCATAATTGTTTTTTGAATCATTGGTGTTGTCCCAA
1 TCATCTTTATTTTTTGACTTA-TGATGTTGTCTCGA
* * * * * **
9197839 TTATTTTTATTTTTTGACCTAT-AGTATTATCTTAA
1 TCATCTTTATTTTTTGACTTATGA-TGTTGTCTCGA
* * *
9197874 TTATCTTTATTTTTTGACTTATGATGTTGTCTTGG
1 TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
* **
9197909 TCATTTTTATTTTTTTGACTTACAATGTTGTCTC-A
1 TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
* *
9197944 GTCATCTTTATTTTTTGACCTGT-TG-TGTTCTC-CTA
1 -TCATCTTTATTTTTTGA-CT-TATGATGTTGTCTCGA
* * * * *
9197979 GTCATATTTATTTTTTTTTACTTATGATGTTATCCCAA
1 -TCATCTTTA--TTTTTTGACTTATGATGTTGTCTCGA
* *
9198017 TCATATTTATTTTTTGAC--ATGCAGTGTTGTCCCGA
1 TCATCTTTATTTTTTGACTTATG-A-TGTTGTCTCGA
* *
9198052 TCATCTTTATTTTTTTGACTTATGGTGTTGTC-CTA
1 TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
* * * * *
9198087 GTCTTTTTTGATTTTTTGACTGTTTGATATTGTCTTGA
1 -TCATCTTT-ATTTTTTGACT-TATGATGTTGTCTCGA
* *
9198125 TCATCTTTATTTTTTTGAC--CTGCAGTGTTATCTCGA
1 TCATCTTTA-TTTTTTGACTTATG-A-TGTTGTCTCGA
* *
9198161 TCATCTTTATTTTTTGACCTATGGTGTTGTCTCGA
1 TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
* * * * *
9198196 TCATTTTTATTTATTCGACTTATGGTCTTGTCCTTG-
1 TCATCTTTATTT-TTTGACTTATGATGTTGT-CTCGA
* * * * * *
9198232 TTATATTTGTTTTCTTGACCATTA--ATGTTATCCCAA
1 TCATCTTTATTTT-TTGA-C-TTATGATGTTGTCTCGA
* * * ** * * *
9198268 TTATTTTTATTTTTTTCACTTGCGGTGTTATC-CCA
1 TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
* * ** * * *
9198303 GTCATATTTGTTTTCTCAATCGT-TGACGTTGTCTTGA
1 -TCATCTTTATTTT-TTGA-CTTATGATGTTGTCTCGA
*
9198340 TCATCTTTATTTTTTGACTTACGATGTTGTCTC-A
1 TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
** * *
9198374 GTCATCTTTATTTTTTTGACTTGCGATGTTATC-CAA
1 -TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
* * * * * * *
9198410 GTTATATTTGTTTTCTCGATCGT-TGGTGTTGTCTAGA
1 -TCATCTTTATTTT-TTGA-CTTATGATGTTGTCTCGA
* ** * * *
9198447 TCATCTTTATTTTTTGACCTGCGGTGTTGTCCCAA
1 TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
* ** *
9198482 TCATCTTTATTTTCTGACTTGCGGTGTTGTCTC-A
1 TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
* * * * *
9198516 CTCATATTTATTTTTTTGATCGT-TGGTGTTGTCCCAA
1 -TCATCTTTA-TTTTTTGA-CTTATGATGTTGTCTCGA
* * ** * * *
9198553 TCATTTTTATTTTTCTAACTTACAATGGTATCTCTA
1 TCATCTTTATTTTT-TGACTTATGATGTTGTCTCGA
* * *
9198589 TCATCTTTATTTTTTTAACTTATGTTGTTGTTTCGA
1 TCATCTTTA-TTTTTTGACTTATGATGTTGTCTCGA
*
9198625 TCATATTTATTTT
1 TCATCTTTATTTT
9198638 CCTAATCGTT
Statistics
Matches: 816, Mismatches: 193, Indels: 156
0.70 0.17 0.13
Matches are distributed among these distances:
33 3 0.00
34 21 0.03
35 272 0.33
36 394 0.48
37 111 0.14
38 14 0.02
39 1 0.00
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.53
Consensus pattern (35 bp):
TCATCTTTATTTTTTGACTTATGATGTTGTCTCGA
Found at i:9198189 original size:108 final size:109
Alignment explanation
Indices: 9197880--9198191 Score: 366
Period size: 108 Copynumber: 2.9 Consensus size: 109
9197870 TTAATTATCT
* * * * *
9197880 TTATTTTTTGACTTATGATGTTGTCTTGGTCATTTTTATTTTTTTGACTTACAATGTTGTCTC-A
1 TTATTTTTTGACTTATGATGTTGTCTTGATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGA
* * *
9197944 GTCATCTTTATTTTTTGACCTGTTGTGTTCTCCTAGTCATATTTA
66 -TCATCTTTATTTTTTGACCTATGGTGTTGTCCTAGTCATATTTA
* * *** *
9197989 TT-TTTTTTTACTTATGATGTTATCCCAATCATATTTA-TTTTTTGACATGCAGTGTTGTCCCGA
1 TTATTTTTTGACTTATGATGTTGTCTTGATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGA
*
9198052 TCATCTTTATTTTTTTGACTTATGGTGTTGTCCTAGTC-T-TTT-
66 TCATCTTTA-TTTTTTGACCTATGGTGTTGTCCTAGTCATATTTA
* * * * *
9198094 TTGATTTTTTGACTGTTTGATATTGTCTTGATCATCTTTATTTTTTTGACCTGCAGTGTTATCTC
1 TT-ATTTTTTGACT-TATGATGTTGTCTTGATCATATTTATTTTTTTGACATGCAGTGTTGTCTC
9198159 GATCATCTTTATTTTTTGACCTATGGTGTTGTC
64 GATCATCTTTATTTTTTGACCTATGGTGTTGTC
9198192 TCGATCATTT
Statistics
Matches: 170, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
105 2 0.01
106 3 0.02
107 39 0.23
108 92 0.54
109 34 0.20
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.55
Consensus pattern (109 bp):
TTATTTTTTGACTTATGATGTTGTCTTGATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGA
TCATCTTTATTTTTTGACCTATGGTGTTGTCCTAGTCATATTTA
Found at i:9198203 original size:108 final size:106
Alignment explanation
Indices: 9197844--9198531 Score: 387
Period size: 107 Copynumber: 6.4 Consensus size: 106
9197834 CCCAATTATT
* * * * * * * *
9197844 TTTATTTTTTGACCTATAGTATTATCTTAATTATCTTTATTTTTTGACTTATGATGTTGTCTTGG
1 TTTATTTTTTGACCTATGGTGTTGTCCTAGTCATTTTTATTTTTTGACTTATGATGTTGTCTTGA
* * * *
9197909 TCATTTTTATTTTTTTGACTTACAATGTTGTCTC-AGTCATC
66 TCATATTTATTTTTTTGACATGCAGTGTTGTCTCGA-TCATC
* * * * * * **
9197950 TTTATTTTTTGACCTGTTGTGTTCTCCTAGTCATATTTATTTTTTTTTACTTATGATGTTATCCC
1 TTTATTTTTTGACCTATGGTGTTGTCCTAGTCAT-TTT-TATTTTTTGACTTATGATGTTGTCTT
* *
9198015 AATCATATTTA-TTTTTTGACATGCAGTGTTGTCCCGATCATC
64 GATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGATCATC
* * * *
9198057 TTTATTTTTTTGACTTATGGTGTTGTCCTAGTCTTTTTTGATTTTTTGACTGTTTGATATTGTCT
1 TTTA-TTTTTTGACCTATGGTGTTGTCCTAGTCATTTTT-ATTTTTTGACT-TATGATGTTGTCT
* * *
9198122 TGATCATCTTTATTTTTTTGACCTGCAGTGTTATCTCGATCATC
63 TGATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGATCATC
* * * *
9198166 TTTATTTTTTGACCTATGGTGTTGT-CTCGATCATTTTTATTTATTCGACTTATGGTCTTGTCCT
1 TTTATTTTTTGACCTATGGTGTTGTCCTAG-TCATTTTTATTT-TTTGACTTATGATGTTGT-CT
* * * * * * * * * *
9198230 TG-TTATATTTGTTTTCTTGACCAT-TAATGTTATCCCAATTATT
63 TGATCATATTTATTTTTTTGA-CATGCAGTGTTGTCTCGATCATC
* * ** * * * * ** * *
9198273 TTTATTTTTTTCACTTGCGGTGTTATCCCAGTCATATTTGTTTTCTCAATCGT-TGACGTTGTCT
1 TTTA-TTTTTTGACCTATGGTGTTGTCCTAGTCATTTTTATTTT-TTGA-CTTATGATGTTGTCT
* * *
9198337 TGATCATCTTTA-TTTTTTGACTTAC-GATGTTGTCTC-AGTCATC
63 TGATCATATTTATTTTTTTGACATGCAG-TGTTGTCTCGA-TCATC
* * * * * * * *
9198380 TTTATTTTTTTGA-CT-TGCGATGTTATCCAAGTTATATTTGTTTTCTCGATCGT-TGGTGTTGT
1 TTTA-TTTTTTGACCTATG-G-TGTTGTCCTAGTCATTTTTATTTT-TTGA-CTTATGATGTTGT
* * * * * *
9198442 CTAGATCATCTTTA-TTTTTTGACCTGCGGTGTTGTCCCAATCATC
61 CTTGATCATATTTATTTTTTTGACATGCAGTGTTGTCTCGATCATC
* * ** * *
9198487 TTTATTTTCTGACTTGCGGTGTTGT-CTCACTCATATTTATTTTTT
1 TTTATTTTTTGACCTATGGTGTTGTCCT-AGTCATTTTTATTTTTT
9198532 TGATCGTTGG
Statistics
Matches: 455, Mismatches: 101, Indels: 53
0.75 0.17 0.09
Matches are distributed among these distances:
105 3 0.01
106 57 0.13
107 203 0.45
108 156 0.34
109 36 0.08
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (106 bp):
TTTATTTTTTGACCTATGGTGTTGTCCTAGTCATTTTTATTTTTTGACTTATGATGTTGTCTTGA
TCATATTTATTTTTTTGACATGCAGTGTTGTCTCGATCATC
Found at i:9198357 original size:107 final size:107
Alignment explanation
Indices: 9198241--9198609 Score: 311
Period size: 107 Copynumber: 3.4 Consensus size: 107
9198231 GTTATATTTG
* * * *
9198241 TTTTCTTGACCATTA-ATGTTATCCCAATTATTTTTATTTTTTTCACTTGCGGTGTTATCCCAGT
1 TTTT-TTGACC-TTACATGTTATCCCAATCATCTTTATTTTTTTCACTTGCGATGTTATCCAAGT
*
9198305 CATATTTGTTTTCTCAATCGTTGACGTTGTCTTGATCATCTTTA
64 CATATTTGTTTTCTCAATCGTTGACGTTGTCTAGATCATCTTTA
* * * * *
9198349 TTTTTTGA-CTTACGATGTTGTCTCAGTCATCTTTATTTTTTTGACTTGCGATGTTATCCAAGTT
1 TTTTTTGACCTTAC-ATGTTATCCCAATCATCTTTATTTTTTTCACTTGCGATGTTATCCAAGTC
* **
9198413 ATATTTGTTTTCTCGATCGTTGGTGTTGTCTAGATCATCTTTA
65 ATATTTGTTTTCTCAATCGTTGACGTTGTCTAGATCATCTTTA
* * * * * * * *
9198456 TTTTTTGACC-TGCGGTGTTGTCCCAATCATCTTTA-TTTTCTGACTTGCGGTGTTGTCTC-ACT
1 TTTTTTGACCTTAC-ATGTTATCCCAATCATCTTTATTTTTTTCACTTGCGATGTTATC-CAAGT
* * ** ** * *
9198518 CATATTTATTTTTTTGATCGTTGGTGTTGTCCCA-ATCATTTTTA
64 CATATTTGTTTTCTCAATCGTTGACGTTGT-CTAGATCATCTTTA
* * * * *
9198562 TTTTTCT-AACTTACAATGGTATCTCTATCATCTTTATTTTTTTAACTT
1 TTTTT-TGACCTTAC-ATGTTATCCCAATCATCTTTATTTTTTTCACTT
9198610 ATGTTGTTGT
Statistics
Matches: 216, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
105 3 0.01
106 64 0.30
107 135 0.62
108 14 0.06
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (107 bp):
TTTTTTGACCTTACATGTTATCCCAATCATCTTTATTTTTTTCACTTGCGATGTTATCCAAGTCA
TATTTGTTTTCTCAATCGTTGACGTTGTCTAGATCATCTTTA
Found at i:9198531 original size:71 final size:70
Alignment explanation
Indices: 9198339--9198604 Score: 227
Period size: 71 Copynumber: 3.7 Consensus size: 70
9198329 CGTTGTCTTG
* * * * *
9198339 ATCATCTTTATTTTTTGACTTACGATGTTGTCTCAGTCATCTTTATTTTTTTGACTTGCGATGTT
1 ATCATCTTTATTTTCTGACTT-CGGTGTTGTCTCAATCATCTTTATTTTTTTGACCTGCGGTGTT
*
9198404 AT-CCA
65 GTCCCA
* * *
9198409 AGTTATATTTGTTTTCTCGATCGTT-GGTGTTGTCT-AGATCATCTTTA-TTTTTTGACCTGCGG
1 A-TCATCTTTATTTTCT-GA-C-TTCGGTGTTGTCTCA-ATCATCTTTATTTTTTTGACCTGCGG
9198471 TGTTGTCCCA
61 TGTTGTCCCA
* * * *
9198481 ATCATCTTTATTTTCTGACTTGCGGTGTTGTCTCACTCATATTTATTTTTTTGATC-GTTGGTGT
1 ATCATCTTTATTTTCTGACTT-CGGTGTTGTCTCAATCATCTTTATTTTTTTGACCTG-CGGTGT
9198545 TGTCCCA
64 TGTCCCA
* * ** * * *
9198552 ATCATTTTTATTTTTCTAACTTACAATGGTATCTCTATCATCTTTATTTTTTT
1 ATCATCTTTA-TTTTCTGACTT-CGGTGTTGTCTCAATCATCTTTATTTTTTT
9198605 AACTTATGTT
Statistics
Matches: 158, Mismatches: 26, Indels: 22
0.77 0.13 0.11
Matches are distributed among these distances:
68 2 0.01
69 1 0.01
70 22 0.14
71 73 0.46
72 57 0.36
73 1 0.01
74 2 0.01
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (70 bp):
ATCATCTTTATTTTCTGACTTCGGTGTTGTCTCAATCATCTTTATTTTTTTGACCTGCGGTGTTG
TCCCA
Found at i:9198914 original size:16 final size:16
Alignment explanation
Indices: 9198893--9198936 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
9198883 CTTTATTTTT
9198893 CAAAACAAAAAATAAA
1 CAAAACAAAAAATAAA
9198909 CAAAACAAAAAAATAAA
1 CAAAAC-AAAAAATAAA
9198926 -AATAACAAAAA
1 CAA-AACAAAAA
9198937 CAACAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.82, C:0.11, G:0.00, T:0.07
Consensus pattern (16 bp):
CAAAACAAAAAATAAA
Found at i:9198921 original size:17 final size:17
Alignment explanation
Indices: 9198893--9198936 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
9198883 CTTTATTTTT
9198893 CAAAAC-AAAAAATAAA
1 CAAAACAAAAAAATAAA
9198909 CAAAACAAAAAAATAAA
1 CAAAACAAAAAAATAAA
9198926 -AATAACAAAAA
1 CAA-AACAAAAA
9198937 CAACAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.82, C:0.11, G:0.00, T:0.07
Consensus pattern (17 bp):
CAAAACAAAAAAATAAA
Found at i:9198927 original size:9 final size:9
Alignment explanation
Indices: 9198899--9198965 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
9198889 TTTTCAAAAC
*
9198899 AAAAAATAA
1 AAAAAACAA
*
9198908 ACAAAAC-A
1 AAAAAACAA
*
9198916 AAAAAATAA
1 AAAAAACAA
*
9198925 AAATAACAA
1 AAAAAACAA
*
9198934 AAACAACAA
1 AAAAAACAA
9198943 AAAATAAC--
1 AAAA-AACAA
*
9198951 AAATAACAA
1 AAAAAACAA
9198960 AAAAAA
1 AAAAAA
9198966 GGAAGGACCA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
7 3 0.07
8 9 0.20
9 29 0.66
10 3 0.07
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.07
Consensus pattern (9 bp):
AAAAAACAA
Found at i:9198947 original size:19 final size:19
Alignment explanation
Indices: 9198923--9198965 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
9198913 ACAAAAAAAT
9198923 AAAAATAACAAA-AACAACA
1 AAAAATAACAAATAACAA-A
9198942 AAAAATAACAAATAACAAA
1 AAAAATAACAAATAACAAA
9198961 AAAAA
1 AAAAA
9198966 GGAAGGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.07
Consensus pattern (19 bp):
AAAAATAACAAATAACAAA
Found at i:9200823 original size:26 final size:26
Alignment explanation
Indices: 9200787--9200838 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
9200777 GGTTTAGAGG
*
9200787 CTACAAAAATCTAACCTTTGCAGTGA
1 CTACAAAAATCCAACCTTTGCAGTGA
*
9200813 CTACAAAAATCCAACCTTTGCGGTGA
1 CTACAAAAATCCAACCTTTGCAGTGA
9200839 ATAATGTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (26 bp):
CTACAAAAATCCAACCTTTGCAGTGA
Found at i:9201527 original size:17 final size:18
Alignment explanation
Indices: 9201505--9201541 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
9201495 AAAATAAGCC
*
9201505 TCTTTTTTTTTC-TTTTT
1 TCTTTTTTCTTCATTTTT
9201522 TC-TTTTTCTTCATTTTT
1 TCTTTTTTCTTCATTTTT
9201539 TCT
1 TCT
9201542 CTTTAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 3
0.81 0.05 0.14
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (18 bp):
TCTTTTTTCTTCATTTTT
Found at i:9203871 original size:23 final size:22
Alignment explanation
Indices: 9203836--9203878 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
9203826 ACCACTAATG
* *
9203836 ATAGAATTTTTAAGAATTCCAA
1 ATAGAATTCTTAAAAATTCCAA
9203858 ATAGCAATTCTTAAAAATTCC
1 ATAG-AATTCTTAAAAATTCC
9203879 TTAGGTGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (22 bp):
ATAGAATTCTTAAAAATTCCAA
Found at i:9206038 original size:15 final size:15
Alignment explanation
Indices: 9205999--9206038 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
9205989 TTCATGTAAA
*
9205999 TAATAATAAAAAAAG
1 TAATAATAATAAAAG
* *
9206014 GAATAATAATAATAG
1 TAATAATAATAAAAG
9206029 TAATAATAAT
1 TAATAATAAT
9206039 GATGATGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
TAATAATAATAAAAG
Found at i:9210529 original size:25 final size:25
Alignment explanation
Indices: 9210501--9210550 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9210491 ATAATATATA
*
9210501 ACATAATTAAAATATGTATAAAATG
1 ACATAATTAAAATATGCATAAAATG
* *
9210526 ACATGATTAAAATATGCATGAAATG
1 ACATAATTAAAATATGCATAAAATG
9210551 TAAAACACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (25 bp):
ACATAATTAAAATATGCATAAAATG
Found at i:9210599 original size:10 final size:10
Alignment explanation
Indices: 9210586--9210613 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
9210576 TTTTTGCATT
9210586 TTTTTGAAAA
1 TTTTTGAAAA
9210596 TTTTTGAAAA
1 TTTTTGAAAA
9210606 TTTTTGAA
1 TTTTTGAA
9210614 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54
Consensus pattern (10 bp):
TTTTTGAAAA
Found at i:9212747 original size:26 final size:27
Alignment explanation
Indices: 9212694--9212749 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
9212684 TTCATAAAGA
*
9212694 TTTTTCACTATTTTTCTCTCTTCTTTT
1 TTTTTCACTATTTTTCTCTCTTCATTT
* *
9212721 TTTTTCAC-ATTTTTTTCTC-TCAATT
1 TTTTTCACTATTTTTCTCTCTTCATTT
9212746 TTTT
1 TTTT
9212750 CTTCTCTCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 8 0.31
26 10 0.38
27 8 0.31
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTTCACTATTTTTCTCTCTTCATTT
Found at i:9213774 original size:20 final size:21
Alignment explanation
Indices: 9213738--9213787 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
9213728 AATTTCATTC
*
9213738 ATTTTGACC-ATTATTGA-TCA
1 ATTTTGACCAAATATTGACT-A
9213758 ATTTTGACCAAAT-TTGACTA
1 ATTTTGACCAAATATTGACTA
9213778 A-TTTGACCAA
1 ATTTTGACCAA
9213788 TTTTTACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (21 bp):
ATTTTGACCAAATATTGACTA
Found at i:9214080 original size:24 final size:24
Alignment explanation
Indices: 9214052--9214100 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
9214042 ACCCTATCTC
9214052 TCTTTCCCCTC-TTCC-TCTCTTATT
1 TCTTT-CCCTCGTTCCTTC-CTTATT
9214076 TCTTTCCCTCGTTCCTTCCTTATT
1 TCTTTCCCTCGTTCCTTCCTTATT
9214100 T
1 T
9214101 ACAATCAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.22
24 16 0.70
25 2 0.09
ACGTcount: A:0.04, C:0.39, G:0.02, T:0.55
Consensus pattern (24 bp):
TCTTTCCCTCGTTCCTTCCTTATT
Found at i:9214657 original size:29 final size:29
Alignment explanation
Indices: 9214624--9214680 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
9214614 GAACATAAGA
*
9214624 ATTATTAATTGCATTGAATTTGAAATTAC
1 ATTATTAATTGCATTGAACTTGAAATTAC
*
9214653 ATTATTAATTGCATTGAACTTGTAATTA
1 ATTATTAATTGCATTGAACTTGAAATTA
9214681 AAGAAGCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (29 bp):
ATTATTAATTGCATTGAACTTGAAATTAC
Found at i:9219482 original size:35 final size:35
Alignment explanation
Indices: 9219436--9219505 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
9219426 ATATATAAAC
* *
9219436 CAAATATTTTCTGGGCATAAATATACAATTAACTT
1 CAAATATTTTCTAGGCATAAACATACAATTAACTT
* * *
9219471 CAAATGTTTTCTAGGCATAAACCTACAATTGACTT
1 CAAATATTTTCTAGGCATAAACATACAATTAACTT
9219506 GACATATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (35 bp):
CAAATATTTTCTAGGCATAAACATACAATTAACTT
Found at i:9223890 original size:79 final size:79
Alignment explanation
Indices: 9223744--9223894 Score: 259
Period size: 79 Copynumber: 1.9 Consensus size: 79
9223734 GGCGATTGGA
* *
9223744 CGTAATCCCTTCCGACGGATCGACCTCAGGCAGTGGTGGGCGACTGGTTGGAACAGATTTGGTCG
1 CGTAATCCCTTCCGACGGATCGACCTCAGGCAGAGGTGGGCGACTGGTTGGAACAGATTTAGTCG
9223809 CATCCAGTTCTGGG
66 CATCCAGTTCTGGG
*
9223823 CGTAGTCCCTTCCGACGGATCGACCTCAGGCAGAGGTGGGCGACTGGTTGGAACAGATTTAAG-C
1 CGTAATCCCTTCCGACGGATCGACCTCAGGCAGAGGTGGGCGACTGGTTGGAACAGATTT-AGTC
9223887 GCATCCAG
65 GCATCCAG
9223895 ACTGGGGGTC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
79 67 0.99
80 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (79 bp):
CGTAATCCCTTCCGACGGATCGACCTCAGGCAGAGGTGGGCGACTGGTTGGAACAGATTTAGTCG
CATCCAGTTCTGGG
Found at i:9224053 original size:80 final size:79
Alignment explanation
Indices: 9223911--9224092 Score: 310
Period size: 80 Copynumber: 2.3 Consensus size: 79
9223901 GGTCTTGTTA
*
9223911 GAACCAGATTTGGGCGCATCCAGTTCTGGCGTAGTCCCTTCCGACGGATCCACCTCAGGCAGTGG
1 GAACCAGATTTGGGCGCATCCAGTTCTGGCGTAGTCCCTTCCGACGGATCCACCTCAAGCAGTGG
9223976 TGGGCGACTGGTTG
66 TGGGCGACTGGTTG
* *
9223990 GAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAAGCAGTG
1 GAACCAGATTTGGGCGCATCCAGTTCT-GGCGTAGTCCCTTCCGACGGATCCACCTCAAGCAGTG
9224055 GTGGGCGACTGGTTG
65 GTGGGCGACTGGTTG
**
9224070 GAACCAGATTCAGGCGCATCCAG
1 GAACCAGATTTGGGCGCATCCAG
9224093 ACTGGGGGTC
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 27 0.28
80 70 0.72
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (79 bp):
GAACCAGATTTGGGCGCATCCAGTTCTGGCGTAGTCCCTTCCGACGGATCCACCTCAAGCAGTGG
TGGGCGACTGGTTG
Found at i:9224184 original size:197 final size:196
Alignment explanation
Indices: 9223749--9224208 Score: 737
Period size: 197 Copynumber: 2.3 Consensus size: 196
9223739 TTGGACGTAA
*
9223749 TCCCTTCCGACGGATCGACCTCAGGCAGTGGTGGGCGACTGGTTGGAA-CAGATTTGGTCGCATC
1 TCCCTTCCGACGGATCGACCTCAGGCAG-GGTGGGCGACTGGTTGGAACCAGATTTGGGCGCATC
*
9223813 CAGTTCTGGGCGTAGTCCCTTCCGACGGATCGACCTCAGGCAGAGGTGGGCGACTGGTTGGAACA
65 CAGTTCTGGGCGTAGTCCCTTCCGACGGATCGACCTCAAGCAGAGGTGGGCGACTGGTTGGAACA
* * *
9223878 GATTTAAGCGCATCCAGACTGGGGGTCTTGTTAGAACCAGATTTGGGCGCATCCAGTTCTGGCGT
130 GATTCAAGCGCATCCAGACTGGGGGTCTTGTTAGAACCAGATTTGGGCACATCCAGTTCTGGCAT
9223943 AG
195 AG
*
9223945 TCCCTTCCGACGGATCCACCTCAGGCAGTGGTGGGCGACTGGTTGGAACCAGATTTGGGCGCATC
1 TCCCTTCCGACGGATCGACCTCAGGCAG-GGTGGGCGACTGGTTGGAACCAGATTTGGGCGCATC
* *
9224010 CAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAAGCAGTGGTGGGCGACTGGTTGGAACC
65 CAGTTCTGGGCGTAGTCCCTTCCGACGGATCGACCTCAAGCAGAGGTGGGCGACTGGTTGGAA-C
* *
9224075 AGATTCAGGCGCATCCAGACTGGGGGTCTTGTTGGAACCAGATTTGGGCACATCCAGTTCTGGGC
129 AGATTCAAGCGCATCCAGACTGGGGGTCTTGTTAGAACCAGATTTGGGCACATCCAGTTCT-GGC
9224140 ATAG
193 ATAG
* * * *
9224144 TCCCTTTCGACGGATCGAGCTCAGGCA-GGTGGGTGACTGGTTGGAACCAGATTCGGGCGCA-CC
1 TCCCTTCCGACGGATCGACCTCAGGCAGGGTGGGCGACTGGTTGGAACCAGATTTGGGCGCATCC
9224207 AG
66 AG
9224209 ACTGGGGGTC
Statistics
Matches: 246, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
196 51 0.21
197 107 0.43
198 58 0.24
199 30 0.12
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (196 bp):
TCCCTTCCGACGGATCGACCTCAGGCAGGGTGGGCGACTGGTTGGAACCAGATTTGGGCGCATCC
AGTTCTGGGCGTAGTCCCTTCCGACGGATCGACCTCAAGCAGAGGTGGGCGACTGGTTGGAACAG
ATTCAAGCGCATCCAGACTGGGGGTCTTGTTAGAACCAGATTTGGGCACATCCAGTTCTGGCATA
G
Found at i:9224245 original size:116 final size:117
Alignment explanation
Indices: 9223986--9224325 Score: 549
Period size: 116 Copynumber: 2.9 Consensus size: 117
9223976 TGGGCGACTG
*
9223986 GTTGGAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAAGC
1 GTTGGAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAGGC
9224051 AGTGGTGGGCGACTGGTTGGAACCAGATTCAGGCGCATCCAGACTGGGGGTCTT
66 A--GGTGGGCGACTGGTTGGAACCAGATTCAGGCGCATCCAGACTGGGGGTCTT
* * *
9224105 GTTGGAACCAGATTTGGGCACATCCAGTTCTGGGCATAGTCCCTT-TCGACGGATCGAGCTCAGG
1 GTTGGAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCT-GACGGATCGACCTCAGG
* *
9224169 CAGGTGGGTGACTGGTTGGAACCAGATTCGGGCGCA-CCAGACTGGGGGTCTT
65 CAGGTGGGCGACTGGTTGGAACCAGATTCAGGCGCATCCAGACTGGGGGTCTT
* *
9224221 GTTGGAACCAGATTTGGGCGCATCCAGTTTTGGACGTAGTCCCTTCTGACGGATCGACCTCAGGC
1 GTTGGAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAGGC
* *
9224286 AGGTGGGCGACTGGTTAGAACTAGATTCAGGCGCATCCAG
66 AGGTGGGCGACTGGTTGGAACCAGATTCAGGCGCATCCAG
9224326 TTCTGAGGGT
Statistics
Matches: 203, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
116 105 0.52
117 37 0.18
118 1 0.00
119 60 0.30
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (117 bp):
GTTGGAACCAGATTTGGGCGCATCCAGTTCTGGGCGTAGTCCCTTCTGACGGATCGACCTCAGGC
AGGTGGGCGACTGGTTGGAACCAGATTCAGGCGCATCCAGACTGGGGGTCTT
Found at i:9230313 original size:20 final size:20
Alignment explanation
Indices: 9230277--9230336 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
9230267 AAAAAAGAGT
*
9230277 AAATCTTGTTGAA-TCTTGAA
1 AAATCTTGAT-AATTCTTGAA
*
9230297 AAATCTTGATAATTCTTGAT
1 AAATCTTGATAATTCTTGAA
* *
9230317 CAATCTTAGATGATTCTTGA
1 AAATCTT-GATAATTCTTGA
9230337 TGCATTGGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 2 0.06
20 21 0.62
21 11 0.32
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (20 bp):
AAATCTTGATAATTCTTGAA
Found at i:9230334 original size:21 final size:20
Alignment explanation
Indices: 9230298--9230337 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
9230288 AATCTTGAAA
9230298 AATCTTGATAATTCTTGATC
1 AATCTTGATAATTCTTGATC
*
9230318 AATCTTAGATGATTCTTGAT
1 AATCTT-GATAATTCTTGAT
9230338 GCATTGGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (20 bp):
AATCTTGATAATTCTTGATC
Found at i:9233075 original size:18 final size:20
Alignment explanation
Indices: 9233040--9233079 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
9233030 TTTGTAAGGA
9233040 TTTTATTTGAAAAAGATTTT
1 TTTTATTTGAAAAAGATTTT
*
9233060 TTTTA-TTG-AAAGGATTTT
1 TTTTATTTGAAAAAGATTTT
9233078 TT
1 TT
9233080 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 3 0.16
20 5 0.26
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (20 bp):
TTTTATTTGAAAAAGATTTT
Found at i:9233332 original size:19 final size:19
Alignment explanation
Indices: 9233296--9233332 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9233286 AAATGAGCTA
*
9233296 AAAAATAAAATCAAAAAAT
1 AAAAATAAAATAAAAAAAT
9233315 AAAAATAAAATAAAAAAA
1 AAAAATAAAATAAAAAAA
9233333 GGAAACTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (19 bp):
AAAAATAAAATAAAAAAAT
Found at i:9234254 original size:3 final size:3
Alignment explanation
Indices: 9234248--9234287 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
9234238 AAAAAAAATG
*
9234248 ATA ATA ATA ATG AT- ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9234288 CTATACAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:9234273 original size:20 final size:20
Alignment explanation
Indices: 9234248--9234287 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
9234238 AAAAAAAATG
*
9234248 ATAATAATAATGATATAATA
1 ATAATAATAATAATATAATA
9234268 ATAATAATAATAATATAATA
1 ATAATAATAATAATATAATA
9234288 CTATACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
ATAATAATAATAATATAATA
Found at i:9234758 original size:120 final size:119
Alignment explanation
Indices: 9234584--9234941 Score: 376
Period size: 120 Copynumber: 3.0 Consensus size: 119
9234574 GATTAAGCTA
* * * * * * * *
9234584 AAACCACGAATCAAAAATGAAACAACTAGGATTAAGTCGAGGTTAAAAATGAATGATCAGGATGA
1 AAACTACGAGTCAAAAATGAAGCAACCAGGACTGAGTCGAGGTAAAAAATGAATGATC-GGACGA
** * * * *
9234649 AACTACAAGTCATAAGAAATGATTTAGACTGAGCCAAGATCGAGTGATCGGGTTG
65 AACTATGAGTCATAAGAAATGATCTAGACTAAGCCAAGATCGGGTGATCGGGATG
* ** * ** * *
9234704 AAA-TCACGAGTTAAAAATGAAGTGACCAGGACTGAGTTGAGGTCGAAAATGAATGACCGAGACA
1 AAACT-ACGAGTCAAAAATGAAGCAACCAGGACTGAGTCGAGGTAAAAAATGAATGATCG-GACG
* * * **
9234768 AAACCATGAGTCATAAGAAATGATCTAGATTAAGCCAAGATCGGGTAATCAAGATG
64 AAACTATGAGTCATAAGAAATGATCTAGACTAAGCCAAGATCGGGTGATCGGGATG
* *
9234824 AAACTACGAGTCAAAAATGAAGCAACCAGGATTGAGTCGAGGTAAAAAATGAATGATCGAACGAA
1 AAACTACGAGTCAAAAATGAAGCAACCAGGACTGAGTCGAGGTAAAAAATGAATGATCGGACGAA
* * * * *
9234889 ACTATGAGTCATAAAAAATAATCTGGACTAAGCTAAGATCGGGTGACCGGGAT
66 ACTATGAGTCATAAGAAATGATCTAGACTAAGCCAAGATCGGGTGATCGGGAT
9234942 TAAATTGCAA
Statistics
Matches: 189, Mismatches: 46, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
119 48 0.25
120 140 0.74
121 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (119 bp):
AAACTACGAGTCAAAAATGAAGCAACCAGGACTGAGTCGAGGTAAAAAATGAATGATCGGACGAA
ACTATGAGTCATAAGAAATGATCTAGACTAAGCCAAGATCGGGTGATCGGGATG
Found at i:9235132 original size:16 final size:16
Alignment explanation
Indices: 9235111--9235169 Score: 118
Period size: 16 Copynumber: 3.7 Consensus size: 16
9235101 TTTCAAATCG
9235111 CAAGAATGAAAGATCA
1 CAAGAATGAAAGATCA
9235127 CAAGAATGAAAGATCA
1 CAAGAATGAAAGATCA
9235143 CAAGAATGAAAGATCA
1 CAAGAATGAAAGATCA
9235159 CAAGAATGAAA
1 CAAGAATGAAA
9235170 TATTCCTAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.58, C:0.12, G:0.19, T:0.12
Consensus pattern (16 bp):
CAAGAATGAAAGATCA
Found at i:9235323 original size:69 final size:69
Alignment explanation
Indices: 9235245--9235455 Score: 368
Period size: 69 Copynumber: 3.1 Consensus size: 69
9235235 TCAGATTCAC
*
9235245 AAGAAAGAAAGATTCACAATATTCCAAGTTTCACAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
1 AAGAAAGAAAGATTCACAAGATTCCAAGTTTCACAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
9235310 TCGT
66 TCGT
*
9235314 AAGAAAGAAAGATTCACAAGATTCCAAGTTTCGCAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
1 AAGAAAGAAAGATTCACAAGATTCCAAGTTTCACAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
9235379 TCGT
66 TCGT
* * * *
9235383 AAGAAAGAAAGATTCACAAGATTCTAAGTTTCACAAAGATGTAAGGTTCGCAAGGACTTTCAAAT
1 AAGAAAGAAAGATTCACAAGATTCCAAGTTTCACAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
9235448 TCGT
66 TCGT
9235452 AAGA
1 AAGA
9235456 TTTTAAGTTT
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 135 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (69 bp):
AAGAAAGAAAGATTCACAAGATTCCAAGTTTCACAAAGGTGCAAGGTTCGTAAGGACTTTCAAAT
TCGT
Found at i:9235508 original size:52 final size:52
Alignment explanation
Indices: 9235394--9235526 Score: 151
Period size: 52 Copynumber: 2.6 Consensus size: 52
9235384 AGAAAGAAAG
* ** * *
9235394 ATTCACAAGATTCTAAGTTTCACAAAGATGTAAGGTTCGCAAGGACTTTCAA
1 ATTCACAAGATTTTAAGTTTTGCAAAGGTGCAAGGTTCGCAAGGACTTTCAA
** * *
9235446 ATTCGTAAGATTTTAAGTTTTGCAAAGGTGCAAGGTTCGTAAGGACTTTCAG
1 ATTCACAAGATTTTAAGTTTTGCAAAGGTGCAAGGTTCGCAAGGACTTTCAA
* *
9235498 TTTCACAAGATTTCATA-TTTTGCAAAGGT
1 ATTCACAAGATTTTA-AGTTTTGCAAAGGT
9235527 TCTAGATTTG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
52 66 0.99
53 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (52 bp):
ATTCACAAGATTTTAAGTTTTGCAAAGGTGCAAGGTTCGCAAGGACTTTCAA
Found at i:9236939 original size:12 final size:12
Alignment explanation
Indices: 9236922--9236953 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
9236912 ATCAATTTTC
9236922 TTTTTTTT-CTT
1 TTTTTTTTGCTT
9236933 TTTTTTTTGCTT
1 TTTTTTTTGCTT
9236945 TTTTTTTTG
1 TTTTTTTTG
9236954 TGGAGCACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (12 bp):
TTTTTTTTGCTT
Found at i:9237004 original size:43 final size:42
Alignment explanation
Indices: 9236943--9237035 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 42
9236933 TTTTTTTTGC
** * *
9236943 TTTTTTTTTTGTGGAGCACATTGGCATTTTGCCCCATCATTT
1 TTTTTTTTTTGTAAAGCACATCGGCATTTTGCCCCATCAATT
* **
9236985 TTTTTTTTTTGATAAAGCACATCGGCATTTTGTCCTGTCAATT
1 TTTTTTTTTTG-TAAAGCACATCGGCATTTTGCCCCATCAATT
9237028 TTTTTTTT
1 TTTTTTTT
9237036 CATTTTTTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 11 0.26
43 32 0.74
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.54
Consensus pattern (42 bp):
TTTTTTTTTTGTAAAGCACATCGGCATTTTGCCCCATCAATT
Found at i:9239970 original size:51 final size:50
Alignment explanation
Indices: 9239915--9240014 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 50
9239905 AGATATATAT
9239915 ATAATAAATAAATAATTAAGCAAGTATAAGCAATGAAAAGAAATAAAAAAA
1 ATAATAAATAAATAATTAAGCAAGTATAAGCAATGAAAAGAAA-AAAAAAA
* *
9239966 ATAATAAATAAATAATTAAGCAAGTGTAAGTAATGAAAAGAAAAAAAAA
1 ATAATAAATAAATAATTAAGCAAGTATAAGCAATGAAAAGAAAAAAAAA
9240015 TCTCAAATTC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 6 0.13
51 41 0.87
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (50 bp):
ATAATAAATAAATAATTAAGCAAGTATAAGCAATGAAAAGAAAAAAAAAA
Found at i:9240738 original size:18 final size:20
Alignment explanation
Indices: 9240702--9240742 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
9240692 TTTGTAAAGA
9240702 TTTTTATTTGAAAAAGATTT
1 TTTTTATTTGAAAAAGATTT
*
9240722 TTTTTA-TTG-AAAGGATTT
1 TTTTTATTTGAAAAAGATTT
9240740 TTT
1 TTT
9240743 GTTTTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 3 0.15
20 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (20 bp):
TTTTTATTTGAAAAAGATTT
Found at i:9240821 original size:27 final size:26
Alignment explanation
Indices: 9240791--9240847 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
9240781 TTTGTTATTA
9240791 TTTTGAAAACTTATTTGAAAAGATTTT
1 TTTTGAAAACTTATTTGAAAAG-TTTT
****
9240818 TTTTTTTTACTTATTTGAAAAGTTTT
1 TTTTGAAAACTTATTTGAAAAGTTTT
9240844 TTTT
1 TTTT
9240848 ATATAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTTGAAAACTTATTTGAAAAGTTTT
Found at i:9240864 original size:26 final size:27
Alignment explanation
Indices: 9240801--9240864 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
9240791 TTTTGAAAAC
* * *
9240801 TTATTTGAAAAGATTTTTTTTTTTTAC
1 TTATTTGAAAAGATTTTTTTTATATAA
9240828 TTATTTGAAAAG-TTTTTTTTATATAA
1 TTATTTGAAAAGATTTTTTTTATATAA
* *
9240854 TTTTTTTAAAA
1 TTATTTGAAAA
9240865 CCTATTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.62
27 12 0.38
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (27 bp):
TTATTTGAAAAGATTTTTTTTATATAA
Found at i:9240935 original size:13 final size:13
Alignment explanation
Indices: 9240917--9240984 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
9240907 ATAAAACCAT
9240917 AATAAAAACTAAA
1 AATAAAAACTAAA
9240930 AATAAAATGAGCTAAA
1 AATAAAA--A-CTAAA
* *
9240946 AA-AATAAAATCAA
1 AATAA-AAACTAAA
* *
9240959 AATAAAAGCAAAA
1 AATAAAAACTAAA
9240972 AATAAAAA-TAAA
1 AATAAAAACTAAA
9240984 A
1 A
9240985 TGAAAAAAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
12 4 0.10
13 23 0.55
14 3 0.07
15 3 0.07
16 9 0.21
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (13 bp):
AATAAAAACTAAA
Found at i:9240947 original size:24 final size:22
Alignment explanation
Indices: 9240920--9240987 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 22
9240910 AAACCATAAT
*
9240920 AAAAACTAAAAATAAAATGAGC
1 AAAAAATAAAAATAAAATGAGC
*
9240942 TAAAAAA-ATAAAATCAAAATAAAAGC
1 -AAAAAATA-AAAAT-AAAAT--GAGC
9240968 AAAAAATAAAAATAAAATGA
1 AAAAAATAAAAATAAAATGA
9240988 AAAAAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
22 2 0.05
23 10 0.27
24 10 0.27
25 11 0.30
26 4 0.11
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.15
Consensus pattern (22 bp):
AAAAAATAAAAATAAAATGAGC
Found at i:9240964 original size:19 final size:19
Alignment explanation
Indices: 9240942--9240992 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
9240932 TAAAATGAGC
*
9240942 TAAAA-AAATAAAATCAAAA
1 TAAAAGAAA-AAAATAAAAA
*
9240961 TAAAAGCAAAAAATAAAAA
1 TAAAAGAAAAAAATAAAAA
9240980 TAAAATGAAAAAA
1 TAAAA-GAAAAAA
9240993 GAAAACTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (19 bp):
TAAAAGAAAAAAATAAAAA
Found at i:9240997 original size:19 final size:19
Alignment explanation
Indices: 9240957--9240997 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
9240947 AAATAAAATC
*
9240957 AAAATAAAAGCAAAAAATA
1 AAAATAAAAGCAAAAAAGA
9240976 AAAATAAAATG-AAAAAAGA
1 AAAATAAAA-GCAAAAAAGA
9240995 AAA
1 AAA
9240998 CTTTACGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.10
Consensus pattern (19 bp):
AAAATAAAAGCAAAAAAGA
Found at i:9240997 original size:24 final size:23
Alignment explanation
Indices: 9240902--9240997 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 23
9240892 CAAAATTTCT
** * *
9240902 TAAAAATAAAACCATAATAAAAAC
1 TAAAAATAAAATGA-AAAAAAAAA
**
9240926 TAAAAATAAAATGAGCTAAAAAAA
1 TAAAAATAAAATGA-AAAAAAAAA
9240950 T-AAAATCAAAAT-AAAAGCAAAAAA
1 TAAAAAT-AAAATGAAAA--AAAAAA
9240974 TAAAAATAAAATGAAAAAAGAAAA
1 TAAAAATAAAATGAAAAAA-AAAA
9240998 CTTTACGATC
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
22 1 0.02
23 8 0.14
24 39 0.68
25 9 0.16
ACGTcount: A:0.74, C:0.06, G:0.05, T:0.15
Consensus pattern (23 bp):
TAAAAATAAAATGAAAAAAAAAA
Found at i:9241383 original size:21 final size:20
Alignment explanation
Indices: 9241335--9241391 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
9241325 TCGGTCATTG
* *
9241335 AAAAATT-CATATTTTTCAT
1 AAAAATTCCAAATTTTTCAA
9241354 AAAAA-TCCAAATTTTTCAAA
1 AAAAATTCCAAATTTTTC-AA
*
9241374 AAAAATTCCAAAATTTTC
1 AAAAATTCCAAATTTTTC
9241392 CCAAATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 1 0.03
19 14 0.44
20 6 0.19
21 11 0.34
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATTCCAAATTTTTCAA
Found at i:9241869 original size:3 final size:3
Alignment explanation
Indices: 9241863--9241938 Score: 113
Period size: 3 Copynumber: 26.0 Consensus size: 3
9241853 AGAAAAAATG
*
9241863 ATA ATA ATA ATG AT- ATA ATA ATA GA-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
9241907 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9241939 CTATACAATA
Statistics
Matches: 68, Mismatches: 1, Indels: 8
0.88 0.01 0.10
Matches are distributed among these distances:
2 5 0.07
3 62 0.91
4 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9247744 original size:19 final size:19
Alignment explanation
Indices: 9247720--9247759 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
9247710 ATCATTAAAA
*
9247720 TTTGTTAAGTATATCAAAT
1 TTTGTTAAGTATACCAAAT
9247739 TTTGTTAAGTATACCAAAT
1 TTTGTTAAGTATACCAAAT
9247758 TT
1 TT
9247760 GGTCATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.47
Consensus pattern (19 bp):
TTTGTTAAGTATACCAAAT
Found at i:9248127 original size:22 final size:22
Alignment explanation
Indices: 9248094--9248181 Score: 77
Period size: 22 Copynumber: 3.7 Consensus size: 22
9248084 AAGTACTTTT
*
9248094 TCTTTTATTTAAATATTTATGC
1 TCTTTAATTTAAATATTTATGC
* *
9248116 TCTTTAACTTAAATAATGTAAGTACTTC
1 TCTTTAATTTAAAT-AT-T---TA-TGC
*
9248144 TTCTTTTATTTAAATATTTATGC
1 -TCTTTAATTTAAATATTTATGC
9248167 TCTTTAATTTAAATA
1 TCTTTAATTTAAATA
9248182 AAAGAGCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
22 26 0.50
23 4 0.08
24 3 0.06
27 3 0.06
28 4 0.08
29 12 0.23
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (22 bp):
TCTTTAATTTAAATATTTATGC
Found at i:9248142 original size:51 final size:51
Alignment explanation
Indices: 9248081--9248182 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
9248071 TTCATTAAAT
*
9248081 TGTAAGTACTTTTTCTTTTATTTAAATATTTATGCTCTTTAACTTAAATAA
1 TGTAAGTACTTCTTCTTTTATTTAAATATTTATGCTCTTTAACTTAAATAA
*
9248132 TGTAAGTACTTCTTCTTTTATTTAAATATTTATGCTCTTTAATTTAAATAA
1 TGTAAGTACTTCTTCTTTTATTTAAATATTTATGCTCTTTAACTTAAATAA
9248183 AAGAGCAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.53
Consensus pattern (51 bp):
TGTAAGTACTTCTTCTTTTATTTAAATATTTATGCTCTTTAACTTAAATAA
Found at i:9249044 original size:249 final size:248
Alignment explanation
Indices: 9248590--9249086 Score: 879
Period size: 249 Copynumber: 2.0 Consensus size: 248
9248580 TATACTTAAT
*
9248590 AAATTTTAGTAACCTGAATGGGGAAAATTAAAATTCAGTAACCCAAATGAGATTTAGGTATAAGT
1 AAATTTTAGTAACCTAAATGGGGAAAATTAAAATTCAGTAACCCAAATGAGATTTAGGTATAAGT
* *
9248655 TGGGTGATTTATGATGAAATTTAGCCACAAACACTATCCAAAAAAAGTTTTTGTTGACAATTTTT
66 TGGGTGATTTATGATGAAATTTAGCCACAAACACTATCCAAAAAAAGTTTTTATTAACAATTTTT
* * *
9248720 TGTCTGTAAAAGTCAATATTCTATCGATATTAGCATTAGCGACTGATTTAGCAATGGGAAATTTC
131 CGTCTGTAAAAGTCAATATTCTATCGATATTAGCATTAGCGACTGATTTAGCAATGGAAAAATTC
*
9248785 TGCCAATGATAGCTAGTCGGTAATGCTATTTCGTTGGTAACAAATGAAATCCA
196 TGCCAATGATAGCTAGTCGGTAATGCTATTTCATTGGTAACAAATGAAATCCA
9248838 AAATTTTAGTAACCTAAATGGGGAAAATTAAAATTCAGT-ACCCAAATGAGATTTAGGTATAAGT
1 AAATTTTAGTAACCTAAATGGGGAAAATTAAAATTCAGTAACCCAAATGAGATTTAGGTATAAGT
*
9248902 TGGGTGATTTATTATGAAATTTAGCCACAAACACTATCCAAAAAAAGTTTTTATTAACAAAATTT
66 TGGGTGATTTATGATGAAATTTAGCCACAAACACTATCCAAAAAAAGTTTTTATTAAC--AATTT
*
9248967 TTCGTCTGTAAAAGTCAATATTCTATCGATATTAGCATTAGTGACTGATTTAGCAATGGAAAAAT
129 TTCGTCTGTAAAAGTCAATATTCTATCGATATTAGCATTAGCGACTGATTTAGCAATGGAAAAAT
*
9249032 TCTGCCAATGATAGCTAGTCGGTAATGCTATTTCATTGGTAATAAATGAAATCCA
194 TCTGCCAATGATAGCTAGTCGGTAATGCTATTTCATTGGTAACAAATGAAATCCA
9249087 TTGGTAATTA
Statistics
Matches: 237, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
247 80 0.34
248 38 0.16
249 119 0.50
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (248 bp):
AAATTTTAGTAACCTAAATGGGGAAAATTAAAATTCAGTAACCCAAATGAGATTTAGGTATAAGT
TGGGTGATTTATGATGAAATTTAGCCACAAACACTATCCAAAAAAAGTTTTTATTAACAATTTTT
CGTCTGTAAAAGTCAATATTCTATCGATATTAGCATTAGCGACTGATTTAGCAATGGAAAAATTC
TGCCAATGATAGCTAGTCGGTAATGCTATTTCATTGGTAACAAATGAAATCCA
Found at i:9249378 original size:19 final size:19
Alignment explanation
Indices: 9249356--9249398 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
9249346 TAAAAACATT
9249356 TATAATTATTCAAAAAACC
1 TATAATTATTCAAAAAACC
* *
9249375 TATAATTATTTAAGAAACC
1 TATAATTATTCAAAAAACC
9249394 TATAA
1 TATAA
9249399 ATTACAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (19 bp):
TATAATTATTCAAAAAACC
Found at i:9252064 original size:59 final size:59
Alignment explanation
Indices: 9251972--9252085 Score: 210
Period size: 59 Copynumber: 1.9 Consensus size: 59
9251962 CATACATCAA
*
9251972 TCGCTATTAGAAGTAGCAAACTCATGTGTTTTATCATGATAATGATGATGATGATGATG
1 TCGCTATTAGAACTAGCAAACTCATGTGTTTTATCATGATAATGATGATGATGATGATG
*
9252031 TCGCTATTAGAACTAGCAAACTCATGTGTTTTATCATGATTATGATGATGATGAT
1 TCGCTATTAGAACTAGCAAACTCATGTGTTTTATCATGATAATGATGATGATGAT
9252086 CATCATCATC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (59 bp):
TCGCTATTAGAACTAGCAAACTCATGTGTTTTATCATGATAATGATGATGATGATGATG
Found at i:9258634 original size:135 final size:133
Alignment explanation
Indices: 9258429--9258671 Score: 310
Period size: 135 Copynumber: 1.8 Consensus size: 133
9258419 GAAACGTCGC
* * ** ** ** * *
9258429 TAAATTAGTTACGTTTTTATGAGAAAAACGTCATTGCTTTGGTGGTGTTTGTAATTGAAAATGCC
1 TAAATTAGTGACATTTTTATGAGAAAAACACCATTGCTTTACTGGCATTTGTAACTGAAAATACC
*
9258494 GCTACTTTAAAGGCAT-TTTGAATCTAAAAATGCCTCTATATTAGTAGTATTTTTATTTTTGAGA
66 GCTACTTTAAAGG--TGTTTGAATCTAAAAATACCTCTATATTAGTAGTATTTTTATTTTTGAGA
9258558 TGCCA
129 TGCCA
9258563 TAAATTTAGTGACATTTTTATGAGAAAAACACCATTGCTTTACTGGCATTTGTAACT-AAAATTA
1 TAAA-TTAGTGACATTTTTATGAGAAAAACACCATTGCTTTACTGGCATTTGTAACTGAAAA-TA
* * *
9258627 CCTCTACTTTAGAGGTGTTTGTATCTAAAAATACCTCTATATTAG
64 CCGCTACTTTAAAGGTGTTTGAATCTAAAAATACCTCTATATTAG
9258672 CGGCGTTTGC
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
133 1 0.01
134 34 0.37
135 57 0.62
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.40
Consensus pattern (133 bp):
TAAATTAGTGACATTTTTATGAGAAAAACACCATTGCTTTACTGGCATTTGTAACTGAAAATACC
GCTACTTTAAAGGTGTTTGAATCTAAAAATACCTCTATATTAGTAGTATTTTTATTTTTGAGATG
CCA
Found at i:9258637 original size:33 final size:33
Alignment explanation
Indices: 9258600--9258665 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
9258590 AACACCATTG
* *
9258600 CTTTACTGGCATTTGTAACTAAAATTACCTCTA
1 CTTTACAGGCATTTGTAACTAAAAATACCTCTA
* ** *
9258633 CTTTAGAGGTGTTTGTATCTAAAAATACCTCTA
1 CTTTACAGGCATTTGTAACTAAAAATACCTCTA
9258666 TATTAGCGGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (33 bp):
CTTTACAGGCATTTGTAACTAAAAATACCTCTA
Found at i:9258680 original size:33 final size:33
Alignment explanation
Indices: 9258611--9258685 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
9258601 TTTACTGGCA
* * *
9258611 TTTGTAACTAAAATTACCTCTACTTTAGAGGTG
1 TTTGTATCTAAAAATACCTCTACTTTAGAGGCG
*
9258644 TTTGTATCTAAAAATACCTCTA-TATTAGCGGCG
1 TTTGTATCTAAAAATACCTCTACT-TTAGAGGCG
*
9258677 TTTGCATCT
1 TTTGTATCT
9258686 TTGAGACACC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
32 1 0.03
33 35 0.97
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (33 bp):
TTTGTATCTAAAAATACCTCTACTTTAGAGGCG
Found at i:9259368 original size:21 final size:21
Alignment explanation
Indices: 9259323--9259375 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
9259313 CAACTGCTTA
* *
9259323 AATTTTA-CACGTTCTTTCTC
1 AATTTTAGCACATTCTTCCTC
*
9259343 CATTTTAGCACATTCTTCCTC
1 AATTTTAGCACATTCTTCCTC
*
9259364 AATTTTGGCACA
1 AATTTTAGCACA
9259376 CTCATATTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.43
Consensus pattern (21 bp):
AATTTTAGCACATTCTTCCTC
Found at i:9268146 original size:79 final size:79
Alignment explanation
Indices: 9268041--9268211 Score: 243
Period size: 79 Copynumber: 2.2 Consensus size: 79
9268031 TTAAATATTG
* * * *
9268041 TGGTTTGCTGAAACTTGTTGTTTGATATTTTTTTGCTAAATGGTATTATATGATATTAGGGTGCT
1 TGGTTTGCTG-AACTTGTTGTATGATATTGTATTGCTAAATGGTATTATATGATATTAGGGGGCT
* *
9268106 GAATCGTATGCTTAA
65 GAATCATATGCTGAA
* * * *
9268121 TGGTTTGCTGAACTTGTTGTATGATATTGTATTGTTGAATGGTATTGTATGATATTGGGGGGCTG
1 TGGTTTGCTGAACTTGTTGTATGATATTGTATTGCTAAATGGTATTATATGATATTAGGGGGCTG
9268186 AATCATATGCTGAA
66 AATCATATGCTGAA
9268200 TGGTTTGCTGAA
1 TGGTTTGCTGAA
9268212 TGGTATTTCT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 71 0.88
80 10 0.12
ACGTcount: A:0.23, C:0.07, G:0.26, T:0.44
Consensus pattern (79 bp):
TGGTTTGCTGAACTTGTTGTATGATATTGTATTGCTAAATGGTATTATATGATATTAGGGGGCTG
AATCATATGCTGAA
Found at i:9268157 original size:18 final size:18
Alignment explanation
Indices: 9268134--9268170 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9268124 TTTGCTGAAC
*
9268134 TTGTTGTATGATATTGTA
1 TTGTTGAATGATATTGTA
*
9268152 TTGTTGAATGGTATTGTA
1 TTGTTGAATGATATTGTA
9268170 T
1 T
9268171 GATATTGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (18 bp):
TTGTTGAATGATATTGTA
Found at i:9268208 original size:12 final size:12
Alignment explanation
Indices: 9268193--9268236 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
9268183 CTGAATCATA
9268193 TGCTGAATGGTT
1 TGCTGAATGGTT
9268205 TGCTGAATGGTAT
1 TGCTGAATGGT-T
* * *
9268218 TTCTGAGTAGTT
1 TGCTGAATGGTT
9268230 TGCTGAA
1 TGCTGAA
9268237 GGGTGTATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.20, C:0.09, G:0.30, T:0.41
Consensus pattern (12 bp):
TGCTGAATGGTT
Found at i:9268245 original size:79 final size:78
Alignment explanation
Indices: 9268041--9268240 Score: 190
Period size: 79 Copynumber: 2.5 Consensus size: 78
9268031 TTAAATATTG
* * * * * * *
9268041 TGGTTTGCTGAAACTTGTTGTTTGATATTTTTTTGCTAAATGGTATTATATGATATTAGGGTGCT
1 TGGTTTGCTG-AACTGGTTGTATGATA-TGTATTGCTGAAGGGTATTATATGATATTAGGGGGCT
* *
9268106 GAATCGTATGCTTAA
64 GAATCATATGCTGAA
* * * * *
9268121 TGGTTTGCTGAACTTGTTGTATGATATTGTATTGTTGAATGGTATTGTATGATATTGGGGGGCTG
1 TGGTTTGCTGAACTGGTTGTATGATA-TGTATTGCTGAAGGGTATTATATGATATTAGGGGGCTG
9268186 AATCATATGCTGAA
65 AATCATATGCTGAA
* *
9268200 TGGTTTGCTGAA-TGGTATTTCTGAGTA-GT-TTGCTGAAGGGT
1 TGGTTTGCTGAACTGGT-TGTATGA-TATGTATTGCTGAAGGGT
9268241 GTATTTGAGC
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
77 10 0.10
78 5 0.05
79 76 0.74
80 12 0.12
ACGTcount: A:0.22, C:0.07, G:0.28, T:0.43
Consensus pattern (78 bp):
TGGTTTGCTGAACTGGTTGTATGATATGTATTGCTGAAGGGTATTATATGATATTAGGGGGCTGA
ATCATATGCTGAA
Found at i:9273328 original size:302 final size:303
Alignment explanation
Indices: 9272778--9273338 Score: 777
Period size: 302 Copynumber: 1.9 Consensus size: 303
9272768 TAATTATATG
* ** * * * **
9272778 GAATATTAAAGGTGTTTTAGGAAAAAAATGCCTTTAAGAATCCATCGCGTCTTTTTTGTATGGAT
1 GAATATTAAAGGCGTTTTAGGAAAAAAACACATTCAAGAATCCATCGAGTCTTTTTTGTATAAAT
9272843 TATTAAAGGCATTTTAAAAAAACACCTTCAATAATACCAACTAAAAATTAACCAAATAGATTATA
66 TATTAAAGGCATTTTAAAAAAACACCTTCAATAATACCAACTAAAAATTAACCAAATAGATTATA
*
9272908 AAGGGCATTTTTCTACGAGTAACGCCTTAAATAATCCCTAATAAAATGTTATTGAAAACGTTTCT
131 AAGGGCATTTTTCTACGAGTAACGCCTTAAATAATCCCTAACAAAATGTTATTGAAAACGTTTCT
* * * * *
9272973 GGACATAATCGCCTTCAATAATTCAACCATTAAAATTTATCATATGAAATATTAATGGTGTTTTT
196 GGACATAACCACCTTCAATAATCCAACCATTAAAATTTATCATATGAAATATTAAAGGCGTTTTT
9273038 TTTACCAAAACCACCTTCAATAATCTTACCAAAAATTTGTGTA
261 TTTACCAAAACCACCTTCAATAATCTTACCAAAAATTTGTGTA
* *
9273081 GAATATTAAAGGCGTTTTGGGCAAAAAACACATTCAAGAATCCATCGAGTCTTTTTTGTATAAAT
1 GAATATTAAAGGCGTTTTAGGAAAAAAACACATTCAAGAATCCATCGAGTCTTTTTTGTATAAAT
* ** * * * *
9273146 TATTGAAGGCATTTT-AAAAAATGCCTTCAATAATACCAACTAAAAATTAATCGAATGGATTATG
66 TATTAAAGGCATTTTAAAAAAACACCTTCAATAATACCAACTAAAAATTAACCAAATAGATTATA
* * * * ** *
9273210 AAGGGCA-TTTTCTTATGGGTAACGCCTTGAATAATCTCTAACAAAATGTTATTGAAGGCGTTTT
131 AAGGGCATTTTTC-TACGAGTAACGCCTTAAATAATCCCTAACAAAATGTTATTGAAAACGTTTC
* * * *
9273274 TGGATATAACCACCTTCAATAATCCGACCATTAAAATTTATCGTTTCG-AATATTAAAGGCGTTT
195 TGGACATAACCACCTTCAATAATCCAACCATTAAAATTTATCATAT-GAAATATTAAAGGCGTTT
9273338 T
259 T
9273339 GAGCCAAAAA
Statistics
Matches: 222, Mismatches: 34, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
301 5 0.02
302 147 0.66
303 70 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (303 bp):
GAATATTAAAGGCGTTTTAGGAAAAAAACACATTCAAGAATCCATCGAGTCTTTTTTGTATAAAT
TATTAAAGGCATTTTAAAAAAACACCTTCAATAATACCAACTAAAAATTAACCAAATAGATTATA
AAGGGCATTTTTCTACGAGTAACGCCTTAAATAATCCCTAACAAAATGTTATTGAAAACGTTTCT
GGACATAACCACCTTCAATAATCCAACCATTAAAATTTATCATATGAAATATTAAAGGCGTTTTT
TTTACCAAAACCACCTTCAATAATCTTACCAAAAATTTGTGTA
Found at i:9274712 original size:27 final size:27
Alignment explanation
Indices: 9274678--9274729 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
9274668 TATTTTATTC
9274678 TATTATAATCTTATATACTAAATATCT
1 TATTATAATCTTATATACTAAATATCT
* *
9274705 TATTATAATTTTATATATTAAATAT
1 TATTATAATCTTATATACTAAATAT
9274730 GAGATTGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (27 bp):
TATTATAATCTTATATACTAAATATCT
Found at i:9281522 original size:20 final size:19
Alignment explanation
Indices: 9281499--9281708 Score: 106
Period size: 20 Copynumber: 10.5 Consensus size: 19
9281489 TATAAACTTA
*
9281499 TAAACCGTAAATCTAAACCC
1 TAAACC-TAAACCTAAACCC
* *
9281519 TAAACCCAAACCAAAACCC
1 TAAACCTAAACCTAAACCC
* *
9281538 TAAACTTAAACCCAAACCC
1 TAAACCTAAACCTAAACCC
* *
9281557 TTAAACCCT-AATCTAAACCAT
1 -TAAA-CCTAAACCTAAACC-C
*
9281578 TAAAACCT-AACCTAAATCTC
1 T-AAACCTAAACCTAAA-CCC
*
9281598 TAAATCCTAAACTTAAA-CC
1 TAAA-CCTAAACCTAAACCC
* * * *
9281617 TAAACTCCAAACCAAAATCT
1 TAAAC-CTAAACCTAAACCC
*
9281637 TAAACTTAAATCC-AAACCCC
1 TAAACCTAAA-CCTAAA-CCC
9281657 TAAACCCT-AACCTAAACCCC
1 TAAA-CCTAAACCTAAA-CCC
9281677 TAAACTCTAAACCCTTAAACCC
1 TAAAC-CTAAA-CC-TAAACCC
* *
9281699 CAAACTTAAA
1 TAAACCTAAA
9281709 TTAAAACCCC
Statistics
Matches: 147, Mismatches: 26, Indels: 33
0.71 0.13 0.16
Matches are distributed among these distances:
18 1 0.01
19 51 0.35
20 61 0.41
21 21 0.14
22 9 0.06
23 4 0.03
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.20
Consensus pattern (19 bp):
TAAACCTAAACCTAAACCC
Found at i:9281529 original size:13 final size:12
Alignment explanation
Indices: 9281517--9281690 Score: 59
Period size: 12 Copynumber: 13.8 Consensus size: 12
9281507 AAATCTAAAC
9281517 CCTAAACCCAAA
1 CCTAAACCCAAA
*
9281529 CCAAAACCCTAAA
1 CCTAAACCC-AAA
*
9281542 CTTAAACCCAAA
1 CCTAAACCCAAA
*
9281554 CCCTTAAACCCTAA
1 -CC-TAAACCCAAA
*
9281568 TCTAAA-CC--A
1 CCTAAACCCAAA
* * *
9281577 -TTAAAACCTAA
1 CCTAAACCCAAA
*
9281588 CCTAAATCTCTAAA
1 CCTAAA-C-CCAAA
**
9281602 TCCTAAACTTAAA
1 -CCTAAACCCAAA
9281615 CCTAAACTCCAAA
1 CCTAAAC-CCAAA
* **
9281628 CCAAAATCTTAAA
1 CCTAAA-CCCAAA
* *
9281641 CTTAAATCCAAA
1 CCTAAACCCAAA
*
9281653 CCCCTAAACCCTAA
1 --CCTAAACCCAAA
9281667 CCTAAACCCCTAAA
1 CCTAAA-CCC-AAA
9281681 CTCTAAACCC
1 C-CTAAACCC
9281691 TTAAACCCCA
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
8 4 0.03
9 3 0.03
11 3 0.03
12 35 0.29
13 34 0.29
14 29 0.24
15 11 0.09
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (12 bp):
CCTAAACCCAAA
Found at i:9281688 original size:15 final size:14
Alignment explanation
Indices: 9281655--9281697 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
9281645 AATCCAAACC
9281655 CCTAAA-CCCT-AA
1 CCTAAACCCCTAAA
9281667 CCTAAACCCCTAAA
1 CCTAAACCCCTAAA
*
9281681 CTCTAAACCCTTAAA
1 C-CTAAACCCCTAAA
9281696 CC
1 CC
9281698 CCAAACTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 6 0.22
13 4 0.15
14 4 0.15
15 13 0.48
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (14 bp):
CCTAAACCCCTAAA
Found at i:9281713 original size:99 final size:98
Alignment explanation
Indices: 9281506--9281713 Score: 235
Period size: 99 Copynumber: 2.1 Consensus size: 98
9281496 TTATAAACCG
* *
9281506 TAAATCTAAACCCTAAACCCAAACCAAAACCCTAAACTTAAACCCAAACCCTTAAACCCTAATCT
1 TAAAT-TAAACCCTAAACCCAAACCAAAACCCTAAACTTAAACCCAAACCCCTAAACCCTAACCT
* * *
9281571 AAACCATTAAAACCTAACCTAAATCTCTAAATCC
65 AAACCACTAAAACCTAACCTAAATCCCCAAATCC
* * *
9281605 TAAACTTAAA-CCTAAACTCCAAACCAAAATCTTAAACTTAAATCCAAACCCCTAAACCCTAACC
1 TAAA-TTAAACCCTAAAC-CCAAACCAAAACCCTAAACTTAAACCCAAACCCCTAAACCCTAACC
* *
9281669 TAAACCCCT-AAACTCTAAACCCTTAAA-CCCCAAA-CT
64 TAAACCACTAAAAC-CT-AA-CC-TAAATCCCCAAATCC
9281705 TAAATTAAA
1 TAAATTAAA
9281714 ACCCCAAAGT
Statistics
Matches: 93, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
98 11 0.12
99 63 0.68
100 8 0.09
101 7 0.08
102 4 0.04
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (98 bp):
TAAATTAAACCCTAAACCCAAACCAAAACCCTAAACTTAAACCCAAACCCCTAAACCCTAACCTA
AACCACTAAAACCTAACCTAAATCCCCAAATCC
Found at i:9281795 original size:23 final size:23
Alignment explanation
Indices: 9281766--9281852 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
9281756 CAAACAATAC
*
9281766 CCCAACCCAAACCGAACCAAAAT
1 CCCAACCCAAACCAAACCAAAAT
* * *
9281789 CCTAA-CCAAGACCAAACC-ATAC
1 CCCAACCCAA-ACCAAACCAAAAT
**
9281811 CCCAACCCAAACTGAACCAAAAT
1 CCCAACCCAAACCAAACCAAAAT
9281834 CCCAACCCAAACCAAACCA
1 CCCAACCCAAACCAAACCA
9281853 TACCCTAATC
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
22 16 0.32
23 34 0.68
ACGTcount: A:0.47, C:0.44, G:0.03, T:0.06
Consensus pattern (23 bp):
CCCAACCCAAACCAAACCAAAAT
Found at i:9281804 original size:45 final size:45
Alignment explanation
Indices: 9281755--9281885 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
9281745 TAAACCAACC
* *
9281755 CCAAACAATACCCCAACCCAAACCGAACCAAAATCCTAA-CCAAGA
1 CCAAACCATACCCCAACCCAAACCGAACCAAAATCCCAACCCAA-A
*
9281800 CCAAACCATACCCCAACCCAAACTGAACCAAAATCCCAACCCAAA
1 CCAAACCATACCCCAACCCAAACCGAACCAAAATCCCAACCCAAA
* * * ** *
9281845 CCAAACCATACCCTAATCAAAACTAAACTAAAATCCCAACC
1 CCAAACCATACCCCAACCCAAACCGAACCAAAATCCCAACC
9281886 TAAATTGAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 73 0.95
46 4 0.05
ACGTcount: A:0.48, C:0.40, G:0.02, T:0.09
Consensus pattern (45 bp):
CCAAACCATACCCCAACCCAAACCGAACCAAAATCCCAACCCAAA
Found at i:9281913 original size:45 final size:45
Alignment explanation
Indices: 9281780--9281913 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 45
9281770 ACCCAAACCG
* * * * *
9281780 AACCAAAATCCTAA-CCAAGACCAAACCATACCCCAACCCAAACTG
1 AACCAAAATCCCAACCCAA-ACCAAACCAAACCCTAAGCCAAACTA
* * *
9281825 AACCAAAATCCCAACCCAAACCAAACCATACCCTAATCAAAACTA
1 AACCAAAATCCCAACCCAAACCAAACCAAACCCTAAGCCAAACTA
* * *** *
9281870 AACTAAAATCCCAACCTAAATTGAACCAAACTCTAAGCCAAACT
1 AACCAAAATCCCAACCCAAACCAAACCAAACCCTAAGCCAAACT
9281914 GAACAAACCC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 70 0.95
46 4 0.05
ACGTcount: A:0.49, C:0.36, G:0.03, T:0.13
Consensus pattern (45 bp):
AACCAAAATCCCAACCCAAACCAAACCAAACCCTAAGCCAAACTA
Found at i:9282048 original size:17 final size:17
Alignment explanation
Indices: 9282023--9282057 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9282013 AACTTTAAAA
9282023 TCAAATCGAACCAAACC
1 TCAAATCGAACCAAACC
* *
9282040 TCAACTCGAACTAAACC
1 TCAAATCGAACCAAACC
9282057 T
1 T
9282058 AAACCTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.34, G:0.06, T:0.17
Consensus pattern (17 bp):
TCAAATCGAACCAAACC
Found at i:9283231 original size:21 final size:21
Alignment explanation
Indices: 9283205--9283259 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
9283195 AGCTTAAATC
9283205 ATTTTAAATTTAAATT-ATTAA
1 ATTTTAAATTTAAATTAATT-A
*
9283226 ATTTTAAAATTAAATTAAATTA
1 ATTTTAAATTTAAATT-AATTA
9283248 ATTTT-AATTTAA
1 ATTTTAAATTTAA
9283260 TTCAAAGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 21 0.70
22 6 0.20
23 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTTAAATTTAAATTAATTA
Found at i:9283279 original size:31 final size:31
Alignment explanation
Indices: 9283236--9283296 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
9283226 ATTTTAAAAT
*
9283236 TAAATTAAATTAATTTTAATTTAATTCAAAG
1 TAAAATAAATTAATTTTAATTTAATTCAAAG
9283267 TAAAATAAATTAATTTTAATTTAATTCAAA
1 TAAAATAAATTAATTTTAATTTAATTCAAA
9283297 TTTGAATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (31 bp):
TAAAATAAATTAATTTTAATTTAATTCAAAG
Found at i:9284512 original size:21 final size:20
Alignment explanation
Indices: 9284488--9284526 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9284478 ATATTTAATA
9284488 TATTTTATTTATAATTTTTGT
1 TATTTTATTT-TAATTTTTGT
*
9284509 TATTTTATTTTAGTTTTT
1 TATTTTATTTTAATTTTT
9284527 AAATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TATTTTATTTTAATTTTTGT
Found at i:9290193 original size:76 final size:76
Alignment explanation
Indices: 9290097--9290245 Score: 237
Period size: 76 Copynumber: 2.0 Consensus size: 76
9290087 ATTCTTGTTG
* *
9290097 AATATTGAGTACTCAATTGTCAAATGCTTTTTTGGTAATGCAATTTTTTT-TTGAAGTTGATTAT
1 AATATTGAGTACTCAATTGTCAAATGC-TTCTTGGTAATGCAATTTTTTTGTTAAAGTTGATTAT
9290161 ATGTTATAAATT
65 ATGTTATAAATT
* * *
9290173 AATATTGAGTGCTTAATTGTCATATGCTTCTTGGTAATGCAATTTTTTTGTTAAAGTTGATTATA
1 AATATTGAGTACTCAATTGTCAAATGCTTCTTGGTAATGCAATTTTTTTGTTAAAGTTGATTATA
9290238 TGTTATAA
66 TGTTATAA
9290246 TTTGCATGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
75 21 0.31
76 46 0.69
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (76 bp):
AATATTGAGTACTCAATTGTCAAATGCTTCTTGGTAATGCAATTTTTTTGTTAAAGTTGATTATA
TGTTATAAATT
Found at i:9291642 original size:18 final size:18
Alignment explanation
Indices: 9291619--9291655 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9291609 TGGCCTAAAA
*
9291619 TTTGTGTAGACATTTTTT
1 TTTGTGTAGAAATTTTTT
*
9291637 TTTGTGTTGAAATTTTTT
1 TTTGTGTAGAAATTTTTT
9291655 T
1 T
9291656 GAATATATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.16, T:0.65
Consensus pattern (18 bp):
TTTGTGTAGAAATTTTTT
Found at i:9299939 original size:21 final size:21
Alignment explanation
Indices: 9299895--9299939 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9299885 ATAATATAGT
* **
9299895 ATATCAATTACCATGCAATTA
1 ATATAAATTACCATGCAAAAA
*
9299916 ATATAAATTATCATGCAAAAA
1 ATATAAATTACCATGCAAAAA
9299937 ATA
1 ATA
9299940 ATAATAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.31
Consensus pattern (21 bp):
ATATAAATTACCATGCAAAAA
Found at i:9300556 original size:20 final size:20
Alignment explanation
Indices: 9300532--9300570 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9300522 AAGGAAACCA
*
9300532 AAAAATTACCTAAAAAACCTC
1 AAAAA-TACCAAAAAAACCTC
*
9300553 AAAAATCCCAAAAAAACC
1 AAAAATACCAAAAAAACC
9300571 CAGATTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.62, C:0.26, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAAATACCAAAAAAACCTC
Found at i:9303814 original size:13 final size:13
Alignment explanation
Indices: 9303792--9303829 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
9303782 AGAAAGATGT
*
9303792 AGAAAGAAAAAAG
1 AGAAAAAAAAAAG
9303805 AGAAAAAAAAAAG
1 AGAAAAAAAAAAG
9303818 -GAAATAAAAAAA
1 AGAAA-AAAAAAA
9303830 AGTTTAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (13 bp):
AGAAAAAAAAAAG
Found at i:9304278 original size:13 final size:13
Alignment explanation
Indices: 9304260--9304289 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
9304250 TTTGATTCAA
9304260 ATTAAATGTGGAT
1 ATTAAATGTGGAT
9304273 ATTAAATGTGGAT
1 ATTAAATGTGGAT
9304286 ATTA
1 ATTA
9304290 GGTTTAGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (13 bp):
ATTAAATGTGGAT
Found at i:9305132 original size:20 final size:20
Alignment explanation
Indices: 9305107--9305145 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
9305097 ATTTTAAATT
9305107 TTTTAA-AAATTAAATATATA
1 TTTTAATAAATTAAA-ATATA
9305127 TTTTAATAAATTAAAATAT
1 TTTTAATAAATTAAAATAT
9305146 TTAACAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTAATAAATTAAAATATA
Found at i:9306486 original size:27 final size:27
Alignment explanation
Indices: 9306456--9306508 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
9306446 GAGTTTAAGT
*
9306456 TAGGTTGATCATTTTATTTGTGGTAGC
1 TAGGTTGATCATTTTATTTCTGGTAGC
9306483 TAGGTTGATCATTTTATTTCTGGTAG
1 TAGGTTGATCATTTTATTTCTGGTAG
9306509 TACAACATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.49
Consensus pattern (27 bp):
TAGGTTGATCATTTTATTTCTGGTAGC
Found at i:9310816 original size:19 final size:17
Alignment explanation
Indices: 9310770--9310816 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 17
9310760 ACATACAATA
9310770 TATATAATAATAAATTT
1 TATATAATAATAAATTT
9310787 TATATGAAATAATAAAATTT
1 TATAT--AATAAT-AAATTT
9310807 TATTATAATA
1 TA-TATAATA
9310817 TTTTTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.19
19 10 0.38
20 8 0.31
21 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TATATAATAATAAATTT
Found at i:9310967 original size:73 final size:77
Alignment explanation
Indices: 9310811--9310959 Score: 202
Period size: 73 Copynumber: 2.0 Consensus size: 77
9310801 AAATTTTATT
* *
9310811 ATAATATTTTTGTTTTCATATTTTCAACAACAATGATATTTTTATCTTAAAAAAGTCCTCTTTGT
1 ATAA-ATTTTTGTTTTCATATTTTCAACAACAATGATATTTTTATCTTAAAAAACTCATCTTTGT
9310876 TGAATTCTAAAAA
65 TGAATTCTAAAAA
*
9310889 ATAAATTTTT-TTTT-ATATTTTCAAC-A-AA-GATCGTTTTTATCTTAAAAACACT-ATCTTTG
1 ATAAATTTTTGTTTTCATATTTTCAACAACAATGAT-ATTTTTATCTTAAAAA-ACTCATCTTTG
9310948 TTGAATTCTAAA
64 TTGAATTCTAAA
9310960 GATTAAATAA
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
72 3 0.05
73 35 0.53
74 3 0.05
75 11 0.17
76 4 0.06
77 6 0.09
78 4 0.06
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (77 bp):
ATAAATTTTTGTTTTCATATTTTCAACAACAATGATATTTTTATCTTAAAAAACTCATCTTTGTT
GAATTCTAAAAA
Found at i:9313823 original size:28 final size:27
Alignment explanation
Indices: 9313779--9313832 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
9313769 TGATTTGATT
* *
9313779 TTGTAGATAATATATCATTTATAATTA
1 TTGTAGATAATATATCAATCATAATTA
9313806 TTGTAGTATAATGA-ATCAATCATAATT
1 TTGTAG-ATAAT-ATATCAATCATAATT
9313833 TAGTATTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 6 0.26
28 16 0.70
29 1 0.04
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (27 bp):
TTGTAGATAATATATCAATCATAATTA
Found at i:9315551 original size:20 final size:19
Alignment explanation
Indices: 9315508--9315552 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
9315498 CTTAAAATTT
*
9315508 AATTTAATTAATTTATATA
1 AATTTAATTAATTTAAATA
* *
9315527 TATTTTATTATATTTAAATA
1 AATTTAATTA-ATTTAAATA
9315547 AATTTA
1 AATTTA
9315553 GATATAAAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTAATTAATTTAAATA
Found at i:9316023 original size:25 final size:26
Alignment explanation
Indices: 9315975--9316024 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
9315965 TCATTTTCTT
* *
9315975 TGTTTTCTTTTTAATGTCTCAAATTA
1 TGTTTTCTTTTTAATATCTAAAATTA
*
9316001 TGTTTT-TTTTTAATATTTAAAATT
1 TGTTTTCTTTTTAATATCTAAAATT
9316025 TAAAATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (26 bp):
TGTTTTCTTTTTAATATCTAAAATTA
Found at i:9324965 original size:22 final size:23
Alignment explanation
Indices: 9324940--9324988 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
9324930 TCTTTTCATT
9324940 TTTATTTATTAAC-TATTTTTAG
1 TTTATTTATTAACTTATTTTTAG
*
9324962 TTTATTTATTAACTTGTTTTTAG
1 TTTATTTATTAACTTATTTTTAG
9324985 TTTA
1 TTTA
9324989 CTTTTGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (23 bp):
TTTATTTATTAACTTATTTTTAG
Found at i:9325484 original size:46 final size:46
Alignment explanation
Indices: 9325430--9325518 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 46
9325420 AAGAAAGATG
9325430 AATTTCTAAATAGACCAAAATGGT-GAAGAATTTAGAAATAAAAAAA
1 AATTTCTAAATAGACCAAAATGGTGGAA-AATTTAGAAATAAAAAAA
* * *
9325476 AATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATAAAA
1 AATTTCTAAATAGACCAAAATGGTGGAAAATTTAGAAATAAAA
9325519 CTTTTAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
46 36 0.92
47 3 0.08
ACGTcount: A:0.52, C:0.08, G:0.15, T:0.26
Consensus pattern (46 bp):
AATTTCTAAATAGACCAAAATGGTGGAAAATTTAGAAATAAAAAAA
Found at i:9331390 original size:66 final size:66
Alignment explanation
Indices: 9331309--9331432 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 66
9331299 GCTAAATGAC
* * * * *
9331309 TTTAAAATAAAAAATGAGCTTCGCTATATAGAGGCTAAATGATTTTAAAATAAAAAATGACCTTA
1 TTTAAAATAAAAAATGAGCTTCGCTATACAAAGGCAAAACGAATTTAAAATAAAAAATGACCTTA
9331374 T
66 T
* ** *
9331375 TTTAAAATAAGAAATGAGCTTCTTTATACAAAGGCAAAACGAATTTAAAATAAGAAAT
1 TTTAAAATAAAAAATGAGCTTCGCTATACAAAGGCAAAACGAATTTAAAATAAAAAAT
9331433 TGGCTCTTCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (66 bp):
TTTAAAATAAAAAATGAGCTTCGCTATACAAAGGCAAAACGAATTTAAAATAAAAAATGACCTTA
T
Done.