Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 9 of 120
Found at i:933302 original size:26 final size:26
Alignment explanation
Indices: 933273--933325 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
933263 GTTGACTTAG
933273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
933299 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
933325 G
1 G
933326 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:934195 original size:26 final size:26
Alignment explanation
Indices: 934165--934216 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
934155 TGGGTTGACT
*
934165 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
934191 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
934217 AAAGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:934354 original size:895 final size:896
Alignment explanation
Indices: 932341--934548 Score: 3289
Period size: 895 Copynumber: 2.5 Consensus size: 896
932331 AGTGCCCGCC
* * *
932341 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATATC
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-C
* * * *
932406 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTATGGCAGCACATGCTAGACTCAGGC
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTATGACAGCACATGCTGGGCTCGGGC
* * * * * *
932471 ATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCACGGGAGCATCGCCAGA-ACACCTGA
130 ATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACGGGAGCATCGTCGGAGA-ACCTGA
* * *
932535 CCGACGGCATTGAGGTTTCGGCGATCGGAGGGGCCGGGGGGTGTGCGTACATGATGTGCGATGGG
194 CCGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
932600 TGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
932665 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
932730 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAAATGAATTTTTTTGTGCATGC
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAAATGAATTTTTTTGTGCACGC
* * * *
932795 CAACAAAAATACAAGGATCACGTCTAAGTTGGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAA
454 CAACAAAAATACAAGAATCACGTCTAAGTTGGGGGACAAAACTCCTTTCAAAAAAATTTTAAAAA
* * *
932860 ACCCCGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
519 ACCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
932925 TTCTCGTGAAGGCTTAAGGGACCATTGTATGAATCTAGAAGCCATAAAAATGGCATTGGCATGCA
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCA
*
932990 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
649 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCT
* *
933055 CTCTGGCCGGCATAGTGCCCACCTGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
714 CTCTGGCCGACATAGTG-CCACCTG-CCG-CCGCCCGCTCGTTTCATCGATTGGCTTAGGCATAC
* * * ** * * * *
933120 GGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCAGCAGCGGGATCGGTAGCACGT
776 GAAGTTCATTCCCAGTATAAGATTGGACCAAACCAAGGGTTGCAGCAGCAGGATCGGCAACACGC
* * * * * * *
933185 AGAGGGTGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAG
841 AGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * * *
933241 CGCCTGCATGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-C
*
933306 GAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGTTTATGACAGCACATGCTGGGCTCGGGC
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTATGACAGCACATGCTGGGCTCGGGC
* *
933371 ATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCCCGGGAGCATCGTCGGAGAACCTGAT
130 ATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACGGGAGCATCGTCGGAGAACCTGAC
*
933436 CGACGGCATTAAGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
195 CGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
933501 GCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTT
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
933566 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * **
933631 TTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCC
390 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAAATGAATTTTTTTGTGCACGCC
* *
933696 AA-AAAAATTACAAGAATGACGTCTACAAAGTTTGGGGACAAAACTCCTTTCAAAAAAATTTTAA
455 AACAAAAA-TACAAGAATCACGTCT---AAGTTGGGGGACAAAACTCCTTTCAAAAAAATTTTAA
* * * *
933760 AAAATCCCAAACCGCAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATTA
516 AAAACCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
933825 AACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCTTAAAATTGGCATTGGCAT
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCAT
* *
933890 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCG
646 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCG
* * * *
933955 TCTCTCTGGCCGACGTAGTG-C-CC-G-C-CCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATAC
711 TCTCTCTGGCCGACATAGTGCCACCTGCCGCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATAC
*
934015 GAAGTTCATTCCCAGTATAAGATTGGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAACACGC
776 GAAGTTCATTCCCAGTATAAGATTGGACCAAACCAAGGGTTGCAGCAGCAGGATCGGCAACACGC
**
934080 AGAGGGGGACCCGGCCAATCCCCGACTTGTTCATCCCGCCCCTCTGGCCAGCTGAG
841 AGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * * *
934136 CGCCCGCGCGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-
* * * *
934201 GAGTTCATTCCCAGTCAAAGATCGGACCGGATC-GAGGGTTACGACAACACATGCTGGGCTCGGG
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGTTTATGACAGCACATGCTGGGCTCGGG
* * **** * *
934265 CATGTGCTGGTGCCATATTTTTTTTTGTCGGGGCACCATCGTATGAGCATCATTGGAGAACCTGA
129 CATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACGGGAGCATCGTCGGAGAACCTGA
* * * * *
934330 CCGATGGCATCGAGGTTCCGACGATCGGGGGGGCGGGGGGGTATGCGCACATGATGTGCGATGGG
194 CCGACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
934395 TGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * * *
934460 TAAGGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
934525 CTTTTTTCAAATGGTCACAAAATC
389 CTTTTTTCAAATGGTCACAAAATC
934549 GTGAAAAATA
Statistics
Matches: 1184, Mismatches: 117, Indels: 19
0.90 0.09 0.01
Matches are distributed among these distances:
895 506 0.43
896 1 0.00
897 1 0.00
899 6 0.01
900 438 0.37
901 2 0.00
903 230 0.19
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTATGACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACGGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAAATGAATTTTTTTGTGCACGCCA
ACAAAAATACAAGAATCACGTCTAAGTTGGGGGACAAAACTCCTTTCAAAAAAATTTTAAAAAAC
CCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCT
CTGGCCGACATAGTGCCACCTGCCGCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGAAGT
TCATTCCCAGTATAAGATTGGACCAAACCAAGGGTTGCAGCAGCAGGATCGGCAACACGCAGAGG
GGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
Found at i:934974 original size:26 final size:26
Alignment explanation
Indices: 934938--935016 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
934928 GTTGACTTAG
934938 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
934964 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
*
934990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
935016 G
1 G
935017 ATCGGACTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 4 0.08
26 43 0.86
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:935925 original size:26 final size:26
Alignment explanation
Indices: 935873--935925 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
935863 GTTAACTTAG
* *
935873 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
935899 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
935925 G
1 G
935926 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:936797 original size:26 final size:26
Alignment explanation
Indices: 936767--936819 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
936757 GTTGATTTAG
936767 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
936793 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
936819 G
1 G
936820 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:938168 original size:875 final size:875
Alignment explanation
Indices: 934990--942815 Score: 8879
Period size: 903 Copynumber: 8.9 Consensus size: 875
934980 CCTAGTCTAA
* * * ** * *
934990 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTGTAGCAGCACATTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
935054 GCACAGACATGTGCTGGTGCCGCATTTATCTTCG-CTGGTGCACCGTCGTCGGAGCGTCACAGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATC-CTGGA
* * * * *
935118 GAACCTGGCCGGCAGCATTGAGGTTCCGACGATCAGGGGGACCGGGGGGGCTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG-TGTGCGAACATGAT
**
935183 GTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
935248 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
935313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
935378 TTGTGCATGCCAAAAAAAATATGAGGATCACGTCTACCAAGTTTGGGGCC-AAAATGTCTTCCGA
386 TTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGA
* * ** *
935442 AAAAATTTTAAAAAATTTCTAAAAACAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
935507 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
935572 GGCATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACAACCCTATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
935637 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGTCCGTTCGTTTCGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG--C--TCGTTTCGT
* * * ** *
935702 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGATCGAGAGTTATGGTA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
* * * * ** * * * *
935767 GCAGTATCGGTAGCATGCAGAAGGGGACCCGACCGATCCTCGACTTACGCATCCCGCCCTTCTGG
770 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * *
935832 TCGACTGAGCGCTCGCACGCACCTTTCGTGCGTTAACTTAG
835 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
935873 GCATACGGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTCCCA-ATCTAAGATTGGACTGGA
1 GCATACGGAGTTCATTCCCA--GT---C-TA---AG---A-T--CAGATC----A--GGAC----
* * * * *
935937 TCGAGGGTT-CGGAAGTAAATGCTGGGCTCGGGCATGTGCTGCTGCCACATTTTTCTTCGTCGGG
41 -CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
936001 GCACCATC-CCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
105 GCACCATCGTCGGAGCATCCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * *
936065 GCCGGGGGGGTGTGCGCACATGATGTGCGGT-GGTGCTGGTACTTGGCACTTATATTGGCCCCCT
168 GCC-GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
936129 ATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
936193 GCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
936257 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG
* * * * * * * **
936322 TTTGGGCCCAAAACA-CTTTCCAAAAAAATTCTAAAAAATCTTGAGCCTCAAAAAGTTTTGAAAA
426 TTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA
* *
936386 TCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
490 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
936451 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
555 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
936516 CTACCACCCTATCGATCCATGGCTTGCGCATCCCCTGTCTCTGGCCGGCGTAAT----GCCCGCT
620 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
936577 CGCCCGCCCGCTCGTTTCATC-GTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGAA
685 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * ** ** * * *
936641 CTGGA-CTGAGGGTTGTGGCAGCAATATCGGCAGCACATAGAGTGGGACCCGATCGATCCCTGGC
750 CCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
* *
936705 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGATTTAG
814 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
936767 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCT----A-A--GA--TCA----GA-TC----A--GGA-C---C
* * *
936832 TGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCG-CTGGG
42 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * * **
936896 GCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-----G
105 GCACCATCGTCGGAGCATCCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
*
936956 --GGGGGGTGTGC-AGACATGATGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCT
169 CCGGGGGGTGTGCGA-ACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
937017 ATCTCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGTT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
**
937081 GCCAGTAGGAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
937146 CTTCAAGTTTTTAGCTTAATTTTTTTGTGCTTGCCAACAAAAACAAAAGGATCACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG
* * * **
937211 TTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTAACCGTAAAAAGTTTCAAAAAT
426 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAAT
* *
937276 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGT
491 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
937341 ATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACC
556 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
937406 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGTCGGTGTAGTGCCTGCCCGCCC
621 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * *
937471 ACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCTTACAGAGTT-ATTCCTAGTGTAAGATTGGAC
686 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
937535 CAGATCGAGGGTTCCAGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
751 CGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* ** *
937600 GCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAG
816 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
937660 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
937724 GCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCATCGGAGCATCACTGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAG
*
937789 AACCTGACCGGCTGCATTGGGGTTCCGACGATCGGGGGTGCCAGGGGGG-GTGCGAACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC-GGGGGGTGTGCGAACATGATGT
* * * * * *
937853 GTGATTGGTTCTAGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
937918 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCGAGTAGCCATTAAAGTGTATGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
937983 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGGGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
938047 GTGCATGCCGAAAAAAATACAAGGATCACACCCACCAAGTTTGGGACCAAAAATCCTTCCTAAAA
388 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * *
938112 AATTTTAAAAAATCCCGAACCACAAAAAGTTTAAAAAATCATGAAAAATTGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
938177 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
938242 ATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
938307 GCATCTCGTCTCTCTAGTCTGCGTAGTGCCCGCCCACCCGCCCGCCTGCTAGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
938372 CTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATTGAACCGGAT-GAAAGGTTGCGACAGCAAGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG-AGGGTTGCGGCAGCAGGA
* * * * * ** *
938436 TTGGCAGCACGCATAGGGGGACACGGTCAATCCCCGACTTTTGCATCGCGCCCCTCTGGCCGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
938501 GAGCGCCGGCACGCTCATTTCATGGGTTGACTTAG
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
938536 GCATACGGAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--AGATC--A--GGAC
* **
938601 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** *
938666 CACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATTGGGGGGG
106 CACCATCGTCGGAGCATC-CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGG
**
938731 CCGGGGGGTGTGC-ACACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 CCGGGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
938795 TCCCCCAGCAAACCTCGAGAACTCACA-CCCCTTCAAAGAGCATTTGAGATTTTAGAGGTTTGCT
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
938859 GCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
938924 CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG
* * * * **
938989 TTTGGGGCCAAAACTCCTTTC-AAAAATATTTTAAAAAATCCCGAA-CAGCAAATAGTTTTGAAA
426 TTTGGGGCCAAAAATCCTTCCGAAAAA-ATTTTAAAAAATCTCGAACCA-CAAAAAGTTTCAAAA
939052 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
489 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
939117 GTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
554 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * **
939182 CCTACCACCCGATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGATCGC
619 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * ** * **
939247 CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCATAGCTCATT-CCAGTCTAAGATTAG
684 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
939311 ACCAGACCAAGGGTTGCAGTAGCAGGATTGCCAGCACGCAGAGGGGGA--C--T---T-----G-
749 ACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
*
939363 -T--GCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
814 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
939422 GCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCA--GT---C-TA---AG---------A-TC--AGATCAG----GAC
* * * * * * * * *
939487 CGAGGGTTGCTGTAGCATATGCTAGGCTCAGGAATGTGCTGGTGCTGTATTTTTCTTCATCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
939552 CACCATCGTCGGAGCATCGTCGGAGAACCTGATCAGTGACATTGGGGTTCCGACGATCGGGGGGC
106 CACCATCGTCGGAGCATCCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-
* * *
939617 CCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTA
169 CCG-GGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
939682 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATCTTATAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
939747 CCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACA
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACA
* *
939812 CTTCGAGTTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAG
362 CTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAG
* * * **
939877 TTTAGGGTCAAAACTCC-TCTCGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAA
426 TTTGGGGCCAAAAATCCTTC-CGAAAAAATTTTAAAAAATCTC-GAACCACAAAAAGTTTCAAAA
* * * * * *
939940 ATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCACGTTAAGGATTAAGGGACCATT
489 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** * *
940005 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGTCTAAACCTA
554 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
940070 CCTACCACCCTATCGATGCACGGCTTGCACATCCCGTCTCCCTGGCCGACGTAGT----GCCCGC
619 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
940131 CCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
684 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * ***
940196 ACCGGA-CCACGGGTTGCGGCAGCAGGATCAGCAGCACGCAGACGGGGG-CCCGATCGATCGTAG
749 ACCGGATCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGGTCGATCCCCG
*
940259 GCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
812 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
940323 GCATACAGAGTTCATTCCCAATCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATT-CC---C--AGTCTA---AG---------A-TC--AGATC--A--GGAC
* * * * * * *
940388 CGAGGGATGCGACAGCTCATGTTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
940453 CACCATCG-CTAGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTACGACGATCGGTGGG
106 CACCATCGTC-GGAGCATC-CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGG
* *
940517 GCCGGGGGGTGCGC-ACAAATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA----------
168 GCCGGGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
940569 A------AT------T-G-G---------CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
940611 GCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
940676 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG
* * *
940741 TTTGGGGCC-AAAATGTCTTTCGAAAAAAGTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA
426 TTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA
940805 TCATGAAAAATAGAAAACGAGT-GATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
490 TCATGAAAAATAGAAAACGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
940869 GTTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCC
554 G-TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
940934 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG
618 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
940995 CCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCG
683 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** * * * *
941060 GACCGGACCGAGGGTTGCGGCAGCAAGATTGGCAGCACATAGAGGGGCACCCGGCCGATCCTCAG
748 GACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGG
* * *
941125 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAG
813 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
941188 GCATACGGAGTTCATTCCCAGTGTAAGATCGGATC-GAACCGAGGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGA-GGGTTGCGGCAGCACATGCTG
* *
941252 GGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-G-G-A------A-
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAG
* * * * *
941307 AACTTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGCTGTGCGTACATAATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGG-TGTGCGAACATGATG
* *
941372 T-CGATGGGTGCTGGTACTTGGCCCTCATATTGG-CCCCTATCTCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
941435 ACACCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
941500 ATAGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
941565 TGTGCATGCCAAAAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-CTTCCGAA
387 TGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAA
**
941629 AAAAGTTTT-AAAAATC-CTGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
450 AAAA-TTTTAAAAAATCTC-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
941692 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-TCGAATTTACAAGCCATAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAA
** * * *
941756 ATGGCATTGGCACACAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGG
577 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** **
941821 CTTGCGCATCCCATCTCTCTGGCCGGTGTAGTACCCGCCCGTCCGCCCGCCAACTTATTTCGTCG
642 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
941886 GTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGAAGT-GAGGGTTGTGGCAG
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGCAG
** * * *
941950 CAGGATCGATAGCACGTAGAGGGGCACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGC
771 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
942015 CGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACCTAG
836 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
942055 GCATACGGAGTTCATTCCCAGTATAAGATCAGA-CCGGACCGAGGGTTACGGCACCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
942119 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A-ACTTG-G-
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGA
* * * *
942180 --CT----GGCAGCATTAGGGTTCCGACGATCGGGGGGCCCGGGGAGGCTGTGCGCACATAATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGG-GG-TGTGCGAACATGATGT
* * *
942239 GAGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
942304 CACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
942369 TGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * * * * * *
942434 GTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGCATAGGGCCAGAACTCGTTTCAAAAA
388 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
** * * *
942499 AATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAATGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
942564 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
942629 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGGTCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
942694 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACTCGTCCGTCCGCTCATTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * * * * *
942755 CTTAGGCATACAAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCA
942816 CATGCTGGGC
Statistics
Matches: 6024, Mismatches: 676, Indels: 505
0.84 0.09 0.07
Matches are distributed among these distances:
829 33 0.01
830 33 0.01
831 11 0.00
832 2 0.00
837 1 0.00
838 1 0.00
839 6 0.00
840 61 0.01
841 2 0.00
844 4 0.00
846 2 0.00
847 3 0.00
853 1 0.00
854 1 0.00
855 1 0.00
856 2 0.00
859 4 0.00
861 1 0.00
862 1 0.00
863 147 0.02
864 505 0.08
865 376 0.06
866 110 0.02
867 347 0.06
868 397 0.07
869 9 0.00
870 1 0.00
871 1 0.00
872 3 0.00
873 1 0.00
874 2 0.00
875 390 0.06
876 254 0.04
878 2 0.00
880 1 0.00
881 1 0.00
882 5 0.00
883 20 0.00
884 52 0.01
885 57 0.01
886 220 0.04
887 180 0.03
888 387 0.06
889 361 0.06
890 4 0.00
892 7 0.00
893 173 0.03
894 196 0.03
895 69 0.01
896 49 0.01
897 6 0.00
898 6 0.00
899 18 0.00
900 42 0.01
901 216 0.04
902 360 0.06
903 623 0.10
904 46 0.01
905 80 0.01
906 20 0.00
907 55 0.01
908 46 0.01
909 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGAACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:938572 original size:26 final size:26
Alignment explanation
Indices: 938536--938588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
938526 GTTGACTTAG
* *
938536 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
938562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
938588 G
1 G
938589 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:939458 original size:26 final size:26
Alignment explanation
Indices: 939422--939474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
939412 GTTGACTTAG
*
939422 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
939448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
939474 G
1 G
939475 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:943411 original size:714 final size:700
Alignment explanation
Indices: 942037--943502 Score: 2147
Period size: 715 Copynumber: 2.1 Consensus size: 700
942027 CGCATGCTTG
* * * * *
942037 TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * *
942102 ACGGCACCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
66 ACGGCACCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCG
* * *
942167 TCGGAGAACTTGGCTGGCAGCATTAGGGTTCCGACGATCGGGGGGCCCGGGGAGGCTGTGCGCAC
131 TCGGAGAACCTGACTGACAGCATTAGGGTTCCGACGATCGGGGGGCCCGGGGAGGCTGTGCGCAC
*
942232 ATAATGTGAGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAA
196 ATAATGTGAGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAA
* *
942297 GAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTG
261 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
942362 TCTGGAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
326 TCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
942427 TTTTTTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGCATAGGGCCAGAACTCGTT
391 TTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGCATAGGGCCAAAAATCCTT
* * * * *
942492 TCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAATGA
456 TCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGA
* * *
942557 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAA
521 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAA
* *
942622 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGGTCCAC
586 AAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCAC
* * * *
942687 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACTCGTCCGTCCGCTCA
651 GGCTTGCGCATCCCATCACTCTGG-CGACGTAGTG--C-C-CGCCCGCCCGCTCA
** *
942742 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* *
942807 ACGGCAGCACATGCTGGGCTCGAGCATGTGCTTGTGCCGCATTTCTCTTCGTCGGGGCACCATCG
66 ACGGCACCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCAT--
* * *
942872 CCGGAGCATCGCAGGAGAACCTGACTGAC-GACATTGGGGTTTCGGCGATCGGAGGGG-CCGGGG
129 -C---G--T--C-GGAGAACCTGACTGACAG-CATTAGGGTTCCGACGATCGG-GGGGCCCGGGG
* * *
942935 -GG-TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
183 AGGCTGTGCGCACATAATGTGAGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCT
**
942998 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
248 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
943063 AGCCATTAAAGTGTCTGAAATAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
313 AGCCATTAAAGTGTCTGAAAT-GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * **
943127 AGTTTTTTAGTTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCATGTCTGCCAAGTTTT
377 AG-TTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAG-CAT
*
943192 A-GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
440 AGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
943256 GAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATC
505 GAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATC
*
943321 AATTTACAAGCCATAAAAATGCCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTAC
570 AATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
943386 CA-CCTAT-GGATCCACGGCTTGCGCATCCTATCACTCTGGCGGCGTAGTGCCCGCCCGCCCGTT
635 CACCCTATCGG-TCCACGGCTTGCGCATCCCATCACTCTGGCGACGTAGTGCCCGCCCGCCCGCT
*
943449 CG
699 CA
*
943451 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
943503 TGGACCGAAG
Statistics
Matches: 682, Mismatches: 62, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
705 115 0.17
708 1 0.00
709 58 0.09
710 1 0.00
711 2 0.00
713 12 0.02
714 212 0.31
715 238 0.35
716 39 0.06
717 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (700 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
ACGGCACCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCG
TCGGAGAACCTGACTGACAGCATTAGGGTTCCGACGATCGGGGGGCCCGGGGAGGCTGTGCGCAC
ATAATGTGAGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGCATAGGGCCAAAAATCCTT
TCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGA
GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAA
AAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCAC
GGCTTGCGCATCCCATCACTCTGGCGACGTAGTGCCCGCCCGCCCGCTCA
Found at i:943664 original size:26 final size:26
Alignment explanation
Indices: 943628--943680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
943618 GTTGACTTAG
943628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
943654 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
943680 G
1 G
943681 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:944763 original size:694 final size:694
Alignment explanation
Indices: 943434--944815 Score: 2011
Period size: 694 Copynumber: 2.0 Consensus size: 694
943424 GCGGCGTAGT
943434 GCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * *
943499 AGACTGGACCGAAGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGGACCCGATCAATGAACG
66 AGACCGGACCGAAGGTTATGGCAGCAGGATCGGCAGCACACAGAGGAGGACCCGACCAATCAACG
* *
943564 CCTTGCGCATCCTGCCCCTCTGGCTGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGG
131 CCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGG
* *
943629 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
196 CATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * **
943694 GTGGGATGCGGCAGCACATTCTGGGCTCAGGCATGTGCTGATGCCGCATTTTTGTTCGTCGAGGC
261 GAGGGATGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGATGCCACATTTTTCTTCACCGAGGC
* ** *
943759 ACCATCGTCGGAGCATCGTTGGAGAACCTGACCGACGACATTGGGGTTCTGACCATCGGGGGGGC
326 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGACCATCGAGGGGGC
** * * *
943824 AGGGGGTGTGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
391 AGGGGGTGTGTGCACACATGACGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTAT
* *
943889 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
456 CCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
943954 CAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTTCACT
521 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCAAAAAATCTTGTACACT
** * *
944019 TCGAGTTACTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
586 TCGAGTTACTAGCTGAATTTTTTTGTGCACACAAAAAAAAATACAAGGATCACGTCTACCAAGTT
* *
944084 TGGGGCTAAAACT-CTTTCCAAAAAAATTTTAAAAAATCTCGCAC
651 TAGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCTCGCAC
* *
944128 GCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
944193 AGACCGGATCGAGGGTTATGGCAGCAGGATTGGCATCACACAGTGG-GGAACCCGGCCGATCACC
66 AGACCGGACCGAAGGTTATGGCAGCAGGATCGGCAGCACACAGAGGAGG-ACCCGACCAATCAAC
* * * * * *
944257 GGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
130 GCCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAG
* * *
944322 GCATACGGAGATCATTCCCAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGA
195 GCATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGA
* * * * * *
944386 CTGAGGGCTGTGGCAGCACGTGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
259 CCGAGGGATGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGATGCCACATTTTTCTTCACCGAG
* * * *
944451 GCACCA-CTGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT-TCGGCGATTGAGG
324 GCACCATC-GCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCT-GACCATCGAGG
944514 GGGCAAGGGGG-GTGTGCACACATGACGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCC
387 GGGC-AGGGGGTGTGTGCACACATGACGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCC
*
944578 CCTATCCCTCATCAAACCTCAAAAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
451 CCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
944643 GCTGCCAGTAGCCCTTAAAGTGTTTGAAATGGGGACACTTTTTACAAATGGTCAAAAAATCTTGT
516 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCAAAAAATCTTGT
** *
944708 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACAAAAAAAAATACAAGGATCATGTCTACC
581 ACACTTCGAGTTACTAGCTGAATTTTTTTGTGCACACAAAAAAAAATACAAGGATCACGTCTACC
*
944773 AAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
646 AAGTTTAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC
944816 CCGAACCGTA
Statistics
Matches: 609, Mismatches: 73, Indels: 12
0.88 0.11 0.02
Matches are distributed among these distances:
693 5 0.01
694 594 0.98
695 10 0.02
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (694 bp):
GCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAAGGTTATGGCAGCAGGATCGGCAGCACACAGAGGAGGACCCGACCAATCAACG
CCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGG
CATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGATGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGATGCCACATTTTTCTTCACCGAGGC
ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGACCATCGAGGGGGC
AGGGGGTGTGTGCACACATGACGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCAAAAAATCTTGTACACT
TCGAGTTACTAGCTGAATTTTTTTGTGCACACAAAAAAAAATACAAGGATCACGTCTACCAAGTT
TAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGCAC
Found at i:945262 original size:26 final size:26
Alignment explanation
Indices: 945226--945278 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
945216 GTTGACTTAG
945226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
945252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
945278 G
1 G
945279 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:945949 original size:26 final size:26
Alignment explanation
Indices: 945920--945972 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
945910 GTTGACTTAG
945920 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
945946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
945972 G
1 G
945973 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:946374 original size:695 final size:694
Alignment explanation
Indices: 945046--946413 Score: 2003
Period size: 694 Copynumber: 2.0 Consensus size: 694
945036 GCCCTCCTGC
*
945046 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * ** * *
945111 GCTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGGACCTGACCGATCAACGCCTTCCACATCCCG
66 GCTGCGACAGCAGGATCGGCAGCACACAGAGGAGGACCCGACCGATCAACGCCTTCCACATCCCA
* *
945176 CCCCTCTGGCCGGCTAAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
131 CCCCTCTGGCCGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGATCAT
*
945241 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGTGGGATGCGGCAG
196 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGATGCGGCAG
* * * *
945306 CACATTCTGGGCTCAGGCATGTGCTGATGCCGCATTTTTGTTCGTCGAGGCACCATCGTCGGAGC
261 CACATTCTGGGCACAGGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGCACCATCGTCAGAGC
* * **
945371 ATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCTGACCATCGGGGGGGCAGGGGGTGTGTGGG
326 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACCATCGGGGGGGCAGGGGGCGTGTGCC
945436 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
391 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
945501 CGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
456 CAAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
945566 GTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTACTAGCT
521 GCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGACTTACTAGCT
* * *
945631 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAC-T
586 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACAT
*
945695 CTTTCCAAAAAAATTTTAAAAAATCTCGCACGCCCGCCTGCCAGT
651 C-TTACAAAAAAATTTTAAAAAATCTCGCACGCCCGCCTGCCAGT
* * *
945740 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * * ** * * *
945805 GTTGCGACAGTAGGATTGGCATCACACAGAGG-GGAACCCGGCCGATCGCCGGCTTGCGCATCCC
66 GCTGCGACAGCAGGATCGGCAGCACACAGAGGAGG-ACCCGACCGATCAACGCCTTCCACATCCC
* * * * * * *
945869 ACCCCTTTGGCTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGATCA
130 ACCCCTCTGGCCGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGATCA
* * * * *
945934 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGGG
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGATGCGGC
* * * *
945998 AGCACATGT-TGGGCACGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCAG
259 AGCACAT-TCTGGGCACAGGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGCACCATCGTCAG
* * *
946062 AGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGCGT
323 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACCATCGGGGGGG-CAGGGGGCGT
* * *
946126 TTGCCCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCA
386 GTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
946191 AACCTCAAGAACTCATAACCCC-TTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
451 AACCTCAAGAACTCA-AACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
946255 ATTAAAGCGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTGACTTCGACTT
515 ATTAAAGCGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGACTT
**
946319 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCC
579 ACTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCC
*
946384 AAAACATCTTACGAAAAAATTTTAAAAAAT
644 AAAACATCTTACAAAAAAATTTTAAAAAAT
946414 TTCGAACTGT
Statistics
Matches: 598, Mismatches: 68, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
693 4 0.01
694 321 0.54
695 266 0.44
696 7 0.01
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (694 bp):
TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GCTGCGACAGCAGGATCGGCAGCACACAGAGGAGGACCCGACCGATCAACGCCTTCCACATCCCA
CCCCTCTGGCCGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGATCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGATGCGGCAG
CACATTCTGGGCACAGGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGCACCATCGTCAGAGC
ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACCATCGGGGGGGCAGGGGGCGTGTGCC
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CAAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGACTTACTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACAT
CTTACAAAAAAATTTTAAAAAATCTCGCACGCCCGCCTGCCAGT
Found at i:947578 original size:26 final size:26
Alignment explanation
Indices: 947542--947594 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
947532 GTTGACTTAG
947542 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
947568 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
947594 G
1 G
947595 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:951446 original size:890 final size:885
Alignment explanation
Indices: 949198--952772 Score: 4331
Period size: 890 Copynumber: 4.0 Consensus size: 885
949188 GTTAACTTAG
* *
949198 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
* * * * ** * * * *
949263 TTCAGGCATGTGCTGATGCCGTATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCAACGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
* * ** * * * * *
949328 ACCTGACCGGCGGCATTGGGGTTCCAACGAT-C--GGCAT-TG-GCAGATGATGTGCGATGTGTA
130 ACCTGACCGGCCGCATTGGGGTTCCGACGATGCGGGGGGTGTGCACACATGATGTGCAATGGGTG
** * *
949388 CTGGTAGTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTCCG-GAACTCACACCCCCTT
195 CTGG-ACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCCCCTT
* *
949452 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACAC
* * *
949517 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATACC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
949582 AACAAAAATACAAGGGTCACATCTACCAAGTTTGGG-CCAACACTCCTTTCGAAAAAATTTAAAA
388 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTAAAA
* * * *
949646 AAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
452 AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAA
949711 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
949776 CAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * *
949841 CTCTCTGGCC-AGCGTAGTGCCCACCCGCCCACCTGCTCGTTTCGTCAGTTGGCTAAGGCATACG
647 ATCTCTGGCCGA-CGTAGTGCCCGCCCGTCCGCCCGCTC-TTTCGTCGGTTGGCTTAGGCATACG
* ** * * * * *
949905 GAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCGGGATCGGTAG-ATCAC
710 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCAGGATCGGCAGCAT-GC
* * ** * * *
949969 AGAGTGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCAA
774 AGAG-GGGACCCGGCAGATCCTCGGCTTAAGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
* *
950034 GCTCATTTC--------A-TAGG--T--TGA---C-TT---AG-----
838 GCTCGTTTCGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAA
*
950057 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-CAGCACATGCTGGG
* * * *
950122 CTCGAGCATGTACTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
* *
950187 ACCTGATCGGCCGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTG-A
130 ACCTGACCGGCCGCATTGGGGTTCCGACGAT-------GCGGGGGGTGTGCACACATGATGTGCA
*
950251 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
188 -ATGGGTGCT-GGACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
950316 CCCCCCTCAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATG
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATG
950381 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTT-
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTG
* * * *
950445 TGCAAGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACA-CCTTCTGAAAA
380 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAA-ATCCTTCCGAAAA
* * *
950509 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
443 AATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCC
*
950574 TGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * **
950639 ATTGGTATGTAGAAAAATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTT
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
950704 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCATTTTGCCGGTTGGCTTA
638 GCATCCCGTATCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTC-TTTCGTCGGTTGGCTTA
* * * * *
950769 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATAGCAGCAGGATTGGT
702 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCAGGATCGGC
* * * *
950834 AGCATGCAGAGTGGGACCCGGCTGATCCTTGGCTTAAGCATCCCGCCCCTCTTGTCGACTGAGCG
767 AGCATGCAGAG-GGGACCCGGCAGATCCTCGGCTTAAGCATCCCGCCCCTCTGGTCGGCTGAGCG
* * * * *
950899 CTCGTATGCTCATTTCGTGGGTTGACTAAGGCATGCGGAGTTCATTCCCAGTCTAA
831 CCCGCACGCTCGTTTCGTGGGTTGACT-AGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
950955 GCGTACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGCATTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
* * * * *
951020 CACGGGTATGTGTTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCATCGGAGCATTATCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCATCGGAGCATCATCGGAG
* *
951084 AACCTGACCGGCCGCATTGGGGTTCCTACGAT-CGGGGGGTGTGAACACATGATGTGCAATGGGT
129 AACCTGACCGGCCGCATTGGGGTTCCGACGATGCGGGGGGTGTGCACACATGATGTGCAATGGGT
* * *
951148 GCTGGTACCTGGTCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTT
194 GCTGG-ACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
951213 AAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAATAACCGTTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACAC
*
951278 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
951343 ATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTAAAA
388 A-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTAAAA
* * *
951408 AAAT-CTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAACCGAGTCGTCCTGCCATGA
452 AAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGA
* *
951472 AACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAT
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
951537 GCAGAAATATGAAGATGTGCCCAAACCC-CCTACCACCCTATCAATCTA-GAACTTGCGCATCCC
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCTTGCGCATCCC
*
951600 ATATCTCT-G--G-C-T-G-GCCCG--C-T-----CG---TTTCGTCGGTTGGCTTAGGCATACG
645 GTATCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCTTTCGTCGGTTGGCTTAGGCATACG
* ** * *
951647 GAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCAGGATCAGCAGCATGTA
710 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCAGGATCGGCAGCATGCA
* ** *
951712 GAGGGGGACCCGACAGATCCTCGGCTTCCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGGACG
775 GA-GGGGACCCGGCAGATCCTCGGCTTAAGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACG
* * *
951777 CTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
839 CTCGTTTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
951825 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCTACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
* * * *
951890 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
* ** * *
951955 ACCTGACTGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCACACATGTTGT
130 ACCTGACCGGCCGCATTGGGGTTCCGACGAT-------G-C-GG-GGGGTGTGCACACATGATGT
* * * * * *
952020 GCGATGGCTGCTGGAACTGGGCCCTTATATTGGCCCACTATCCCACATGAAACCTCGAGAACTCA
185 GCAATGGGTGCTGGACCT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
952085 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
* * *
952150 TGGGGACACTTTTTTCAAATGATCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
952215 GTGCATGCCAAAAAAATTACAAGGATCATGTCTACCAAGTTTGGGGA-CAGAACTCCTTCCAAAA
379 GTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTT-GGGACCAAAAATCCTTCCGAAA
* *
952279 AAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
442 AAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** **
952344 CTGCCATGAAACTTCACGTGAAGGCTTACTGGACCATTGTATGAATTTACATCCCATAAAAATGG
507 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
952409 CATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
952474 CGCATCCCGTTTCTCCGGCCGATGTAGTGCCCACCCGTCCACCCGCCCACCCGCCCGCTCGTTTC
637 CGCATCCCGTATCTCTGGCCGACGTAGTG----CCCG----CCCG----TCCGCCCGCTC-TTTC
* * *
952539 GTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAG
689 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAG
* * * * * * *
952604 TAGCGGGATCGACAGCACGCAGAGGTGGACCCAGCCA-ATCCCCGTCTTGAGCATCCCGCCCCTC
754 TAGCAGGATCGGCAGCATGCAGAGG-GGACCC-GGCAGATCCTCGGCTTAAGCATCCCGCCCCTC
* *
952668 TGGGCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAG
817 TGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTAGGCATACGGAGTTCATTCCCAG
952733 TCTAA
881 TCTAA
* *
952738 CCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
952773 AGATCAAAGG
Statistics
Matches: 2336, Mismatches: 269, Indels: 168
0.84 0.10 0.06
Matches are distributed among these distances:
858 1 0.00
859 142 0.06
867 1 0.00
869 3 0.00
870 312 0.13
871 219 0.09
872 379 0.16
873 3 0.00
874 2 0.00
879 2 0.00
880 12 0.01
881 391 0.17
882 49 0.02
883 3 0.00
884 2 0.00
885 2 0.00
886 3 0.00
887 1 0.00
888 3 0.00
889 46 0.02
890 400 0.17
891 1 0.00
893 6 0.00
897 1 0.00
898 140 0.06
899 2 0.00
909 2 0.00
912 2 0.00
913 202 0.09
914 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGAA
CCTGACCGGCCGCATTGGGGTTCCGACGATGCGGGGGGTGTGCACACATGATGTGCAATGGGTGC
TGGACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTAAAAAAAT
CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCT
CTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGG
ACCCGGCAGATCCTCGGCTTAAGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:951835 original size:26 final size:26
Alignment explanation
Indices: 951799--951851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
951789 GTTGACTTAG
*
951799 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
951825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
951851 G
1 G
951852 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:952327 original size:881 final size:879
Alignment explanation
Indices: 948115--952770 Score: 5179
Period size: 863 Copynumber: 5.3 Consensus size: 879
948105 CCGCCCACCT
* *
948115 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC-GAACTG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTG
*** * * * *
948179 AGGGTTGTGGTAGTAGGATCGGCAGCATGCATAGGGGGACCCAGTCGATCCCCAGCTTGCGCATC
65 AGGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCC-GGCGATCCCCGGCTTGCGCATC
* * * * *
948244 GCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * * * * * * *
948309 CATTCCAAGTCTAAGTATACGGAGTTCATTCCTAGCCTAGGATCAGATCGAATCGAGGGTTGCGG
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGA
* * * *
948374 GAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGG
259 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGG
* * ** * ** * *
948439 AGCATC-GCTGGGGAACCTGACCGATGGAATTACGATTCCGACAATCGAGGGGTCGGGGGGTGTG
324 AGCATCATC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGG-CGGGGGGTGTG
*
948503 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
386 CACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** *
948568 CTCGAGAACTCACAAACCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
948633 AAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAG
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
948698 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CTAAAA
581 CTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGAC-AAAA
* ** * * * *
948762 CTCCTTCCTAGGAAATTT-TAAAAAT-CTCGAACCGTGAAAAGTTTTGAAAAA-CGTAAAAAATA
644 CTCCTTCCGAAAAAATTTAAAAAAATCCT-GAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATA
* * *
948824 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTCACA
707 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * * *
948889 AGATATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTAT
772 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
948954 CGATCCATGGCTTGTGCATTCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCATC
837 CGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C-GC---GTG--CG-CC--C
* *
949007 TGCCTGCCCGCTAGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 -G-CT-----C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * * *
949072 CCGGACCGATGGTTGCAGTAGTAGGATTGGTAGCACGTAGAGGGGGACCTGGTCGATCCCTGGCT
57 CCAGACTGAGGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGG-CGATCCCCGGCT
* * * * *
949137 TGGGCATGCCGCCCCTCTGGCCGGTTGAGCGCCCTCACGCTTGTTTCGT-GG--G---T-----T
121 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
949191 --A-A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
186 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
* * * * * *
949241 GGTTGCGATAGCACATGCTGGGTTCAGGCATGTGCTGATGCCGTATTTTTCTTCGTCAGGGCACC
251 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACC
* * *
949306 ATCGTCGAAGCATCAACGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATC---GGC-----
316 ATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCGGGGG
* * * * * * * * *
949363 AT-TG-GCAGATGATGTGCGATGTGTACTGGTAGTTGGCCCATATATTGGGCCCCTATCCCTCAT
381 GTGTGCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
949426 CAAACCTCCG-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
446 CAAACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
949490 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGT
510 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
949555 TTTTAGCTGAATTTTTTTGTGTATACCAACAAAAATACAAGGGTCACATCTACCAAGTTT-GGGC
575 TTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
* * *
949619 CAACACTCCTTTCGAAAAAATTTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAA
639 CAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
949684 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
704 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
949749 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCC
769 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
949814 TATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCACC
834 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C-GC---GTG------CG--C-CC
* * *
949874 TGCTCGTTTCGTCAGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTG
1 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * *
949939 AGGGTTACGGCAGCGGGATCGGTAG-ATCACAGAGTGGGACCCGGCCGATCCCCGGCTTGCGCAT
65 AGGGTTACAGTAGCAGGATCGGCAGCAT-GCAGAGGGGGACCCGG-CGATCCCCGGCTTGCGCAT
* * * *
950003 CCCGCCCCTCTGGCCGGCTGAGTGCCCGCAAGCTCATTTC--------A--TAGG--T--TGA--
128 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* *
950052 -C-TT---AG-----GCATACGGAGTTCATTCCCAGACTAAGATCAGACCGGACCGAGGGTTGC-
193 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
* * * *
950106 AGCAGCACATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC
258 A-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC
* * *
950171 GGAGCATCACCGGAGAACCTGATCGGCCGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGT
322 GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGCGGGGGGTGT
* * *
950236 GCGCACATGATGTGAGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
385 GCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
950301 CCTCGAGAACTCACACCCCCCTCAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCGTT
450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
950366 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
515 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
950431 GCTGAATTTGTTTT-TGCAAGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAA
580 GCTGAATTT-TTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAA
* * * * *
950495 ACACCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAG
643 ACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
*
950560 AAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
708 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
950625 GCCATAAAAATGGCATTGGTATGTAGAAAAATGAGGATGTGCCTAAACCCACCTACCACCCTATC
773 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
**
950690 GATCCACGGCTTTTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCC
838 GATCCACGGCTTGCGCATCCCGTCTCTCTGG-CG-C---GT--------G--CGCCC
* * * * **
950747 GCTCATTTTGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * * * * ** **
950812 GGGTTATAGCAGCAGGATTGGTAGCATGCAGAGTGGGACCCGGCTGATCCTTGGCTTAAGCATCC
66 GGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGC-GATCCCCGGCTTGCGCATCC
* * * * * * * * * *
950877 CGCCCCTCTTGTCGACTGAGCGCTCGTATGCTCATTTCGTGGGTTGACTAAGGCATGCGGAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * * **
950942 ATTCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGCATTGCGAC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGAC
* * * *
951007 AGCACATGCTGGGCACGGGTATGTGTTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCATCGG
260 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGC-CGGGGCACCATCGTCGG
* * * *
951071 AGCATTATCGGAGAACCTGACCGGCCGCATTGGGGTTCCTACGAT------CGGGGGGTGTGAAC
324 AGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCGGGGGGTGTGCAC
* * * * *
951130 ACATGATGTGCAATGGGTGCTGGTACCTGGTCCTTATGTTGGCCCCCTATCCCTCATCAAACCTC
389 ACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * * *
951195 GAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAATAACCGTTAAAG
454 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
951260 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG
519 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
951325 AATTTTTTTGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAAATC
584 AATTTTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA-CAAAACTC
*
951389 CTTCCGAAAAAATTTAAAAAAAT-CTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
647 CTTCCGAAAAAATTTAAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
951453 CCGAGTCGTCCTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACAAGCC
711 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
951518 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCC-CCTACCACCCTATCAAT
776 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
951582 CTA-GAACTTGCGCATCCCATATCTCT-G-GC-TG-GCCC
841 CCACG-GCTTGCGCATCCCGTCTCTCTGGCGCGTGCGCCC
*
951617 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * * * *
951682 GGGTTACAGTAGCAGGATCAGCAGCATGTAGAGGGGGACCCGACAGATCCTCGGCTTCCGCATCC
66 GGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGC-GATCCCCGGCTTGCGCATCC
* * *
951747 CGCCCCTCTGGTCGGCTGAGCGCCCGGACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * * *
951812 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCTAC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGAC
* **
951877 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGA
260 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGA
* * * * *
951942 GCATCGTCGGGGAACCTGACTGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGT
325 GCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGG-C-GG-GGGGTGT
* * * * * *
952007 GCACACATGTTGTGCGATGGCTGCTGGAACTGGGCCCTTATATTGGCCCACTATCCCACATGAAA
385 GCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
952072 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
952137 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCGCAAAATCTTGTACACTTCGAGTTTTTA
515 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
952202 GCTGAATGTTTTTGTGCATGCCAAAAAAATTACAAGGATCATGTCTACCAAGTTTGGGGACAGAA
580 GCTGAATTTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGACAAAA
* * * *
952267 CTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAA
644 CTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* ** **
952332 AAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTACTGGACCATTGTATGAATTTACATC
709 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
952397 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCG
774 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
952462 ATCCACGGCTTGCGCATCCCGTTTCTCCGGCCGATGTAGTGCCCACCCGTCCACCCGCCCACCCG
839 ATCCACGGCTTGCGCATCCCG--TCT-----C--TCT-G-G----CGCGT------G------CG
952527 CCC
877 CCC
* *
952530 GCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-G
* * * * * * * * *
952594 AGGGTTGCAGTAGCGGGATCGACAGCACGCAGAGGTGGACCCAGCCAATCCCCGTCTTGAGCATC
65 AGGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCC-GGCGATCCCCGGCTTGCGCATC
* * * *
952659 CCGCCCCTCTGGGCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* *
952724 CATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCAGA
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
952771 CCAGATCAAA
Statistics
Matches: 3222, Mismatches: 402, Indels: 258
0.83 0.10 0.07
Matches are distributed among these distances:
855 1 0.00
858 3 0.00
859 282 0.09
861 1 0.00
862 28 0.01
863 411 0.13
864 9 0.00
865 1 0.00
866 2 0.00
867 7 0.00
868 2 0.00
869 2 0.00
870 323 0.10
871 221 0.07
872 368 0.11
873 5 0.00
874 1 0.00
875 135 0.04
876 4 0.00
879 1 0.00
880 11 0.00
881 393 0.12
882 39 0.01
883 3 0.00
884 4 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 46 0.01
890 399 0.12
891 2 0.00
893 3 0.00
894 3 0.00
895 1 0.00
897 1 0.00
898 141 0.04
899 3 0.00
900 4 0.00
901 136 0.04
902 1 0.00
906 1 0.00
912 1 0.00
913 214 0.07
914 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
GGGTTACAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAG
CATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCGGGGGGTGTGCACAC
ATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTC
CGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCGCGTGCGCCC
Found at i:952749 original size:26 final size:26
Alignment explanation
Indices: 952713--952763 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
952703 TTGACCTAGG
952713 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
952739 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
952764 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:952787 original size:185 final size:185
Alignment explanation
Indices: 952554--952952 Score: 611
Period size: 185 Copynumber: 2.2 Consensus size: 185
952544 TTGGCTTAGG
* * * * *
952554 CATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGTAGCGGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGTTGCAGCAACAGGATCGACAG
* * *
952619 CACGCAGAGGTGGACCC-AGCCAATCCCCGTCTTGAGCATCCCGCCCCTCTGGGCGGCTGAGTGC
66 CACGCAGAGGTGAACCCGA-CCAATCCCCGGCTTGAGCATCCCGCCCCTCTGGGCGGCTGAGCGC
* * *
952683 CCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAC
130 CCGCACGCTCGTTTCGTGGGTTGACCTAGGAATACAGAGTTCATTCCCAATCTAAC
* * *
952739 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGTTGCAGCAACAGGATCTACGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGTTGCAGCAACAGGATCGACAG
* *
952804 CACGTAGAGGTGAACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGGCTGAGCGCC
66 CACGCAGAGGTGAACCCGACCAATCCCCGGCTTGAGCATCCCGCCCCTCTGGGCGGCTGAGCGCC
* *
952869 CGCACGCTCGTTTCGTGGGTTGACTTAGGAATACAGAGTTCATTCCCAATCTAAG
131 CGCACGCTCGTTTCGTGGGTTGACCTAGGAATACAGAGTTCATTCCCAATCTAAC
*
952924 CATACGGAGTTCCTTCCCAGTCTAAGATC
1 CATACGGAGTTCATTCCCAGTCTAAGATC
952953 GGATTGGACA
Statistics
Matches: 194, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
185 193 0.99
186 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGTTGCAGCAACAGGATCGACAG
CACGCAGAGGTGAACCCGACCAATCCCCGGCTTGAGCATCCCGCCCCTCTGGGCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACCTAGGAATACAGAGTTCATTCCCAATCTAAC
Found at i:952935 original size:26 final size:26
Alignment explanation
Indices: 952899--952949 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
952889 TGACTTAGGA
952899 ATACAGAGTTCATTCCCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
* * *
952925 ATACGGAGTTCCTTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
952950 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:956825 original size:26 final size:26
Alignment explanation
Indices: 956789--956841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
956779 GGTTGACTAG
*
956789 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
956815 GCATATGGAGTTCATTACCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
956841 G
1 G
956842 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTACCAGTCTAA
Found at i:958600 original size:26 final size:26
Alignment explanation
Indices: 958571--958623 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
958561 GTTGACTTAG
*
958571 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTATAA
* *
958597 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGCAGTTCATTCCCAGTATAA
958623 G
1 G
958624 ATAGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTATAA
Found at i:959253 original size:904 final size:899
Alignment explanation
Indices: 955923--959367 Score: 4394
Period size: 893 Copynumber: 3.9 Consensus size: 899
955913 GTTGACTTAG
* * * *** *
955923 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGGTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
* * * * ** * * ** *
955988 CTTGGGCATGTGCCGGTGCCACT-TTTTTCTTCATCGGGGCACCATTGACGGAGCATCCCCGGAC
66 CTCGAGCATGTGCTGGTGCC-GTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
956052 AACCTGACCGACAGG-ATTAGGGTTCCGACGAACGGGGGGC-AGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGAC-GGCATTGGGGTTCCGGC-AACGGGGGGCGAGGGGGGGTGCGCACATGATGTG
* *
956115 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGC
193 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
956180 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAAT
*
956245 GGGGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTG
323 GGGGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* *
956310 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
956375 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTT
*
956440 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** ** * * * *
956505 TTGGCAGGCAGAAATAT---GAT-CACAAAAACTC-GC-ACC-CCCTATCGGTCCATGGCTTGCA
583 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
** * * * *
956563 CATCCCGTCTCTCTGGTAGGCGTAGT-ACCCGCCCGTCCGTTCGCC-C-GTTCGTTTCGTCAGTT
648 CATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCCTCCG--C-CCACTGCTCGTTTCGTCGGTT
* * * ** *
956625 AGCTTAGGCATACAGAGTTAATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTATGGCAGCAGG
710 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGG
* * * * * *
956690 ATCGGCAGAACGCAGAGGGGGACCCGATCAATCCCTGACTTACGCATCCCG-CCCTTTGGCCGAC
775 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTATGGCTGGC
*
956754 TGAGCGCCCGCATGCTCGTTTCGTAGGTTGAC-TAGGCATATGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCATGCTCGTTTCGT-GGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAA
* * * * *
956815 GCATATGGAGTTCATTACCAGTCTAAGATTGGACCAGACAGAGGGTTGCAGCAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
* * * *
956880 CTC-AGACATGTGCTAGAGCCGTATTTTTCTTTGCCGGGGCACCAACGCCGGAGCATCGTCGGAG
66 CTCGAG-CATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
956944 AACCTGACCGACGGCATTGGGGTTCCGTG-AACGGGGGGGCCAGGGGGGGTGCGAACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCG-GCAAC-GGGGGGCGAGGGGGGGTGCGCACATGATGTG
* * * * * *
957008 CAATGGTTGCTGGCACTTTGCACTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCAC
193 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
957073 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAAT
*
957138 GGGGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTG
323 GGGGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* *
957203 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
957268 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTT
*
957333 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
957398 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTG
583 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* *
957463 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCCG---C-CCGCCCA--G-TCATTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCCTCCGCCCACTGCTCGTTTCGTCGGTTGGC
* * * *
957520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCAGGATC
713 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATC
** * * * * * *
957585 GGCAGCACATAAAAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCTCGCCCCTATGG-TCAGT
778 GGCAGCAC-GCAGAGGGGGACCCGATCGATCCCCGA-CTTACGCATCCCGCCCCTATGGCT-GGC
* * * * * *
957648 TGAGCGCCTGTACGCTCGTTTCGCGGGTTGACTTAGGCTTACAGACTTCATTCCCAGTCTAA
840 TGAGCGCCCGCATGCTCGTTTCG-TGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * *
957710 GCATATGAAGTTCATTCCTAGTCTAAGATTA-AACCAGACCGAGGGTTACAGCAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGA-TAGGACCAGACCGAGGGTTACAGCAGCACATGCTGG
* * *
957774 GCTCGGGCATGAGCTGGTGCCGGATTTTTCTTCGCCGGGGCACCAT---C--A-CA-----GGAG
65 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * **
957828 AACCTGACTGGCGGCATTGGGGTTCC-G--AC---GATCG-GGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGGCAACGGGGGGCGAGGGGGG-GTGCGCACATGATGTGC
* * * * * *
957886 GATGGGTGCTGGTACTTGGCCCTTATATTGACCTCCTATCCCTCTTCAAACCTCAAAAACTCACA
194 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
957951 CCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATG
* ** * * *
958016 AGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
*
958081 GCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTT-GGGACCAAAACTCCTTCCAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CCAAAACTCCTTCCAAAAAA
* * ** ** *
958145 ATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTT
* *
958210 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * ** *
958275 TTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACTCTATCGATGTA-GGCTTGTG
583 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * *
958339 CATGCCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCCTCCGCCCACCTGCTCGTTTCATCTGT
648 CATCCCGTCTCTCTGGCCGACGTAGTG---ACCCGCCCCTCCGCCCA-CTGCTCGTTTCGTCGGT
** ** *
958404 TGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATGGGATTGGACTGAGGGTTGTGGTAGCA
709 TGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCA
* * * *
958468 GAATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTG
773 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTATGGCTG
* *
958533 GCTGAACGCCCGCATGCTCATTTCGTGCGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAA
838 GCTGAGCGCCCGCATGCTCGTTTCGTG-GTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * *
958597 GCATATGGAGTTCATTCCCAGTATAAGATAGGACCAGACCGAGGGTTACGGTAGCATATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
**
958662 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
958727 ACCTGACCGACGGCACTGGAGTTCTGGCAATCGGGGGGCGGGGGGGGGTACGCACATGATGTGCA
131 ACCTGACCGACGGCATTGGGGTTCCGGCAA-CGGGGGGCGAGGGGGGGTGCGCACATGATGTGCA
958792 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
958856 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGGAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGG
* * * * *
958921 GGACACCTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTTTG
325 GGACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
* *
958985 CAAGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACAT-CTTCCAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-AGGGCCAAAAC-TCCTTCC-AAAAA
** *
959048 AATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCATGAAAAAAAG-AAACGAGTCGTC
452 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTC
* * ** * *
959111 CTACCATGAAAGATCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
959176 CATTGGCATGCAGTAATTTGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCATGGCTTG
581 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * ** * *
959241 CGCATCCCGTCTCTCTGGTCGACGTAGTG-CCCGCCCGC-CCGGCCGTTCACTCTTTTCGTCGGT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCC-CTCCGCCCACT-GCTCGTTTCGTCGGT
* *
959304 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCA
709 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCA
959368 CATGCTGGGC
Statistics
Matches: 2228, Mismatches: 253, Indels: 136
0.85 0.10 0.05
Matches are distributed among these distances:
876 41 0.02
877 417 0.19
880 4 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 35 0.02
886 4 0.00
887 187 0.08
888 81 0.04
889 2 0.00
890 2 0.00
891 7 0.00
892 211 0.09
893 454 0.20
894 35 0.02
895 116 0.05
896 8 0.00
897 6 0.00
898 26 0.01
899 5 0.00
900 123 0.06
901 3 0.00
902 30 0.01
903 145 0.07
904 198 0.09
905 78 0.04
906 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCAACGGGGGGCGAGGGGGGGTGCGCACATGATGTGCAA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGG
GACACCGTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGACCCGCCCCTCCGCCCACTGCTCGTTTCGTCGGTTGGCTTA
GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTATGGCTGGCTGAGCG
CCCGCATGCTCGTTTCGTGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:960014 original size:717 final size:703
Alignment explanation
Indices: 958604--960773 Score: 2805
Period size: 717 Copynumber: 3.0 Consensus size: 703
958594 TAAGCATATG
* * ** * *
958604 GAGTTCATTCCCAGTATAAGATAGGACCAGACCGAGGGTTACGGTAGCATATGCTGGGCTCGAGC
1 GAGTTCATTCCTAGTCTAAGATA-GACC-GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGC
* * *
958669 ATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
64 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGACGGAGAACCTGAC
* * * * * *
958734 CGACGGCACTGGAGTTCTGGCAATCGGGGGGCGGGGGGGGGTACGCACATGATGTGCAATGGGTG
128 CGACGGCATTGGGGTTC-GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
958799 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCTTAA
*
958864 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGGAATGGGGACACCT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACACCT
*
958929 TTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCAAGCCAA-
321 TTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCAAGCCAAC
*
958993 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACATCTTCCAAAAAAAATTTTAAAA
386 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACACCTTCC-AAAAAAATTTTAAAA
* * *
959058 AATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAAAAG-AAACGAGTCGTCCTACCATGAAA
449 AATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAA
*
959122 GATCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
514 CATCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGC
*
959187 AGTAATTTGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
578 AGTAATTTGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * **
959252 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGGCCGTTCACTCTTTTCGTCGGTTGGCTTAGGCATA
643 TCTATGGTCGACGTA-TGCCCGCCCGCCCGCCCGCCCACTCTTTTCGTC-GTTGGCTTA-GC--A
959317 C
703 C
959318 AGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAG
1 -GAGTTCATTCCTAGTCTAAGAT-AGACC-GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAG
* * *
959383 CATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCAG-CGAAGCATCGCCGGAGAACCTG
63 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCCG-AGCATCGACGGAGAACCTG
*
959447 ACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATG
126 ACCGACGGCATTGGGG-TTCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATG
959512 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
188 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
*
959577 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACA
253 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACA
*
959642 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTTGCACGC
318 CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCAAGC
*
959707 CAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
382 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAA
* * *
959772 AAAATCCCGAACCGAAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
447 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGA
*
959837 AACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAAGCATAAAAATGGCATTGGCAT
512 AACATCATGTGAAGGCTTAAAGGACCATTGTATGAATTTA-CAAGCATAAAAATGGCATTGGCAT
*
959902 GCCAGT-A-TTGAAAGATCGTGCCTAAAACCCTCCT-CCACCC-CTCGATCCACGGCTTGCGCAT
576 G-CAGTAATTTG-AAGAT-GTGCCT-AAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
959963 -CCGT-TCTATGGTC-ATGT-TGCCCGCCCGCCGCCCGCCCGCCCCGCTTCTTTTCGTCGTTGGC
637 CCCGTCTCTATGGTCGACGTATGCCCG--C-CCGCCCGCCCG-CCCAC-TCTTTTCGTCGTTGGC
960024 TTAGCAC
697 TTAGCAC
* * * *
960031 GAATTCATTTCCTAGTCTAAGATTGGGACCGACCGA-GGTTGTAGCAGCACATGCT-GGCTCGGG
1 GAGTTCA-TTCCTAGTCTAAGA-T-AGACCGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAG
* *
960094 CATGTGC--GTGCCGCATTTTTCTTCGTCGGGGC-CACATCGCCGGGCATC-ACTG-GAACCTG-
63 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC-CATCGCCGAGCATCGACGGAGAACCTGA
* *
960153 CCGACGGCATT-GGGTTCGGCGATCGGGGGGCC--GGGATGTGCGCACATGATTGTG-AATAGGC
127 CCGACGGCATTGGGGTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA-TGTGCAAT-GGG
* * *
960214 TGCTGGTACTTGG-CCTCTATATTGGCCCCC-ATCTCTCATC-AACCTTGAGAACTCAGACCCAT
190 TGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-T
*
960276 T-AAGAGCATTTTTGAGATTTATACAGGTTTGTTGCCACGTGGCCAGTTAAAGTGTCTGGAATGG
253 TAAAGAGCA--TTTGAGATTT-TACAGGTTTGCTGCCA-GTGGCCA-TTAAAGTGTCTGGAATGG
*
960340 GGACAGCCTTTCTC-AATTGTCAC-AAATCTTGTACACTTCGTAGTTTTTAGGCTG-ATTTCTTT
313 GGACA-CCTTTTTCAAATTGTCACAAAATCTTGTACACTTCG-AGTTTTTA-GCTGAATTT-TTT
*
960402 TTGCATGCCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCC-AA
374 TTGCAAG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACC-TTCCAAA
* * *
960465 AAACTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCCATGAAAAAAAGAAAACGAGTCG
437 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT-CATGAAAAAAAGAAAACGAGTCG
960530 TTCTTGCCATGAAACATCACTGGTGAAGGCCTATAAAGGACCATTGTATGAATTTACAAGCATAA
501 -TCTTGCCATGAAACATCA-T-GTGAAGG-CT-TAAAGGACCATTGTATGAATTTACAAGCATAA
** * * *
960595 AAATGGCATTGGCACACCAGAAATATGGAGATGTGCCTAAA--CTCCTACCACCCTATCGAT-CA
561 AAATGGCATTGGCA-TGCAGTAATTTGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCA
* * * * * *
960657 TGGCTTTGCCCATCCCGTCTCTCTGGTCGATCGTAGTGCTCG-CCG-CCGCCTGCCTAACGTGTC
625 CGGC-TTGCGCATCCCGTCTCTATGGTCGA-CGTA-TGCCCGCCCGCCCGCCCGCC-CAC---TC
960720 TTTTCGTCGGTTGGCTTAGGCAC
683 TTTTCGTC-GTTGGCTTA-GCAC
960743 ATGGAGTTCATTACC-AGTCTAAGATCAGACC
1 ---GAGTTCATT-CCTAGTCTAAGAT-AGACC
960774 AGATTGAGGG
Statistics
Matches: 1303, Mismatches: 87, Indels: 132
0.86 0.06 0.09
Matches are distributed among these distances:
698 25 0.02
699 33 0.03
700 42 0.03
701 14 0.01
702 34 0.03
703 140 0.11
704 45 0.03
705 34 0.03
706 19 0.01
707 26 0.02
708 52 0.04
709 67 0.05
710 13 0.01
711 25 0.02
712 34 0.03
713 32 0.02
714 21 0.02
715 157 0.12
716 199 0.15
717 232 0.18
718 49 0.04
719 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (703 bp):
GAGTTCATTCCTAGTCTAAGATAGACCGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGACGGAGAACCTGACCGA
CGGCATTGGGGTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTC
AAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCAAGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACATCATG
TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCATAAAAATGGCATTGGCATGCAGTAATTT
GAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGT
CGACGTATGCCCGCCCGCCCGCCCGCCCACTCTTTTCGTCGTTGGCTTAGCAC
Found at i:960922 original size:26 final size:26
Alignment explanation
Indices: 960893--960946 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
960883 GGGTTGACTT
*
960893 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
*
960919 AGCATGCGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
960945 AG
1 AG
960947 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:961828 original size:26 final size:26
Alignment explanation
Indices: 961789--961841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
961779 GTTGACTTAG
961789 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
961815 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
961841 G
1 G
961842 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:964375 original size:26 final size:26
Alignment explanation
Indices: 964339--964391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
964329 GCTGACTTAG
*
964339 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
964365 GCATGCGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
964391 G
1 G
964392 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:965249 original size:26 final size:26
Alignment explanation
Indices: 965217--965269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
965207 GTTGACTTAG
*
965217 GCATACGGATTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
965243 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
965269 G
1 G
965270 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:966148 original size:26 final size:26
Alignment explanation
Indices: 966112--966164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
966102 GTTGACTTAG
*
966112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
966138 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
966164 G
1 G
966165 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:966268 original size:895 final size:892
Alignment explanation
Indices: 962798--973180 Score: 13178
Period size: 907 Copynumber: 11.7 Consensus size: 892
962788 CTGGCCGAGA
* *
962798 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCG
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
962863 CATCAAACCTCGAAAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
962928 AGCAATTAAAGTGTCTAAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
962993 GTTTTTAGTTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATTACGTGTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
963058 GCCAGAACCCCTTCC-AAAAAATTTTAAAAAATCTCAAACCGTAAAAATTTTCAAAAATCATGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
963122 AAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
963187 TTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCCACCTTGCC
391 TTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACC-TACC
** * * ** * * * * *
963251 ACCCTATCGATCCAC-AATTGCGCATCCCGTCTCTCTGGTCGACGTAATGCCCGCCCGTCTGCCC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGCTC
*
963315 GTTTCGTC-GTTGGCTTAGGCATAC-GAGTTCA-TCCCAGTCTAAGAT--GA--AGACGA-GGTT
519 GTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTT
*
963372 GC-GCAGCA-GATCGG-AGCATGCAGAGAGGGACCCGA-CTGATCCCC-GCTTG-GCAT--C-CC
584 GCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCC
* *
963428 CCTCTGGCTGGCTGAGCGCCCGTACGCTCG--T-GTGGGTTGACTTAGGCATACGGAGTTCATTC
648 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * **
963490 CCAGTC-AA-TATACGGAGTTCA-T-CCAGTCTAAGATC-GA-C-GAACGAGGGTTGGCGGTAGC
713 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGACAGC
963548 ACATGCTGGGCTCGGGCATGTGCT-GTG-CGCATTTTTC-T--TCGGGGCACCATCGCC-GAGCA
777 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGC-
*
963607 AT--CCGGA-AA-CTGACC--AGG-ATTGGGGTT-CGG-GATC--GGGGCCGG
840 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGGGGCCGG
963649 GGGGTGTGCGCACATGATGAT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGTGTGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
963713 TCA-CGAAACCTCGAGAACTCACACCCCCATAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 TCATC-AAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
963777 AGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTGAAATGGTCACAAAATCTTGTACACTT
128 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
963842 CGAGCTTTTAGCT-AAATTTTTTGTGCTTGCCTACAAAAATACAAGGATCATGTCTACCAAGTTT
193 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
963906 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTT
258 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
963971 GAAAAAGAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATAGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
964036 AATTTACAAGCCATAAAAATGGCATTGGCA-TGGAGAAATATGAAGATGTGCCTAAACCCACCTA
388 AATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * **
964100 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGTCGACGCAGTGCCCACCCGCCTGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCA----CCTGC
* * * * ** * *
964165 CCGCTCGTTTTATCGGTTAGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATTGGACCGGAAT
513 CCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
* * * *
964230 AAGGGTTGCGACAGCAGGATCAGCAGCATGCAGAGGGGGA-CC---CGA-------CTTGCACAT
577 GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * *
964284 CTCGCCCCTCTGGTCCGGCAGAGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAG
642 CCCGCCCCTCTGG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
964349 TTCATTCCTAGTCTAAGCATGCGGAGTTCATTCCCATTCTAAGATC-G----GACC---GG--AC
706 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC
** * *
964404 --C-G---A---TGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCT
771 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC
* * * * * *
964460 GGAGCATCGTCGAAGAAGCTGACCGACGGCATTGGGGTTCC-GACGATCGAGGGAGCTGG
835 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATCG-GGGGGCCGG
* * *
964519 GGGGTGTGTACGTACATGATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCC
1 GGGGTGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
964584 CTCATCAAACATCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
64 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
964649 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAACAAAA-CTTGTACACTT
129 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTT
* *
964713 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTT
193 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
964778 GGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAACCCCAAACCGTAAAAAGTTTCAAAAATCAT
258 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
964843 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
964908 AATTAACAAGCCATAAAAATGGTATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTA
388 AATTTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * *
964972 CCACCCTATCGATCCTGGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCCGCTTGCCCGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGC
* * *
965037 TCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACTGAGG
517 TCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGG
* * **
965102 GTTGCGACAGCAAGATCGGCAGCACACCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCC
581 GTTGCGGCAGCAGGATCGGCAGCA-TGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * * * * *
965166 GCCCCTCTGGTCGGTTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGATTTCA
645 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
965231 TTCCCAGTCTAAGCATACGGAGTTCATTCCCTA-TCTAAGATCGGACTAGACCGAGGGTTGCGAT
710 TTCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCAGACCGAGGGTTACGAC
* * *
965295 AGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGA
774 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGA
* ** *
965360 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATTAGGGGGCTGGG
838 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGGGGC-CGG
* * * *
965416 GGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCTCTATTCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
965481 CATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
965546 AGCAATTAAAGTCTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
965611 GTTCTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
965676 GCAAAAACTCCTTCCAAAAAAATTTCAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
965741 AAATAGAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* ** *
965806 TTACAAGCCAAAAAAATTTCATTGGCACTCATAAATATGAAGATGTGCCTAAACCCACCTACCAC
391 TTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
965871 CCTGTCCATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGACGTGGTGCCCACCTGCCCGCTCGT
456 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGCTCGT
* * * **
965936 TTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTATAAGATCAGACTGGATCGAGGGTTG
521 TTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTG
* * * * * *
966001 TGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCCCGGCTTACGCATCCCGCCCC
585 CGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
966066 TCTGGCTGGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
650 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
966131 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGATCAAGGGTTACGACAGCACA
715 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACA
* * * * ** *
966196 TGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCAAGGCACCATCCACGGAGCATCA
780 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCC-CGGAGCATCG
* * * * *
966261 CCGGAGAACTTGACCGGCGGCATTGGGGTTCCAGCGACCGGGGGGTCGG
844 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGGGGCCGG
*
966310 GGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
966375 CATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
966440 AGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * **
966505 GTTTTTAGCTGAATGTTTTTGTGGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
966570 ACCAAAACCCCTTCCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
966635 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
966700 TTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
391 TTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
966765 CCTATCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGACGTGGTGCCCGCCCGCCCGCTCGT
456 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGCTCGT
* * * *
966830 TTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATTAGACCAGACCGAGGGTTG
521 TTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTG
* ** * * * * *
966895 CGGTAGCAGGATCAACAGCACGTAGAGGGGG-CCCGGTCGATCCCCGGCTTGCGCATTCCGCCCT
585 CGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
966959 TCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTC
650 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * * * * * *
967024 AGTCTAGGCATACGAAATTCATTCCCAATCTAAGATCAGACCGGATC-AAGGTT-TG-CAACACA
715 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACA
* *** * * * *
967086 TGCTGGGCTCGGGCATGTGCCGGCATCGTATTTTTCTTCGTTGGGGCACCATCCACAGAGCATCA
780 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCC-CGGAGCATCG
* * * * * * *
967151 CCGAAGAACTTGACCGACGGTAATGGGGTTCC-AACGATCGGGGGGGTCGG
844 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATC-GGGGGGCCGG
*
967201 GGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** * *
967266 TGTCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
967331 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
967396 GTTTTTAGCTGAATGTTTTTT-TGGAAGCCAACAAAAATACAAGGATCACGTCTTA-GAAGTTTG
196 GTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTG
* * * *
967459 GGAG-AAAAACCCCTTCCAAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
259 GG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
*
967523 GAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
967588 AATTTACAAGCCATAAAAATGGTATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTA
388 AATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** *
967652 CCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTGGTGCCCACCCACCTGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGC
* * ** *
967717 TCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTTCCAGTATAAGATCAGACTGGACCAAGG
517 TCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGG
* * * * * *
967782 GTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACTCGATCGATGCCCGGCTTACGCATCCTG
581 GTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * *
967847 CCCCTTTGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCAT
646 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
967912 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAG
711 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAG
* *
967977 CACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGC
* * *
968042 ATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCC-GACGATCGGGGGAGCCAG
840 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATCGGGGG-GCCGG
* *
968096 GGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCC
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * * *
968161 CATCACACCTCCAGAACTCACTCCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTACCACT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
968226 AGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
968291 GTTTTCAGCTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATAACATCTACCAAGTTTAGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * ** *
968356 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTGAAAAGTTTTGAAAATCTTGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
968421 AAATAAAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
**
968486 TTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGATTAAACCCACCTACCA
391 TTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
968550 CCCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGGCATAGTGCCCGACCACCCGTCTG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTG--C--CCA--C--CTG
* * * * *
968615 CCCGATCATTTCATCGGTTGCCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGAC
512 CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
968680 TGAGGGTTGCGGTAGTAGGATCGGCAGCATGCAAACGGGGACCCGACCGATCCCCGACTTGCACA
577 -GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * *
968745 TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAG
641 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* ** ** *
968810 TTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCAAACCAGATGGAGGGTTGC
706 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC
* * **
968875 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCC
771 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC
* * * *
968940 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCTGCGATCGGGGGGGCCGAGGAG
835 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATC-GGGGGGCC---G-G
* * *
969003 GGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCGCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
969068 CATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
969133 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
969198 GTTTTTAGCTG-ATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** **
969262 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACAGTGAAAAGTTTTGAAAATTGTGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
969327 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAC
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
969392 TTACAAGCCATAAAAATGGCATTGGCACGT-AGAAATATAAAGATGTGCCTAAACCCACCTACCA
391 TTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
969456 CCCTATCGATCCACGACTTGCGCAACTCGTCTCTCTGGCCGGCGTGGTGCCCACCCGCTCGCTCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGCTCG
* *
969521 TTTCATCAGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
520 TTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTT
*** ** *
969586 ATAGCTA-CAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCC
584 GCGGC-AGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* *
969650 CCTCTGGCCGGCTGAGCGCTCACACGCTCGTTTCGTGGGTTGAC-T-----TA---AG--CA-T-
648 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
969702 --A--C--A--A-A---A-TTTATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTACGATAGAA
713 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCA
* *
969754 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCAT
778 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCAT
* * * ** * * *
969819 TGTCGAAGAACCTGACTAGCGGAATTGGGGTT-CTGACGATCGGGGGGGGTCGGGG
842 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATC--GGGGGG-C-CGG
* * * *
969874 GGGGTGTGCACACATGATGTGCGGTGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCCATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
969939 CATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
970004 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
970069 CTTTTTAGCTAAATGTTTTTGTGCAAGGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * ** *
970134 GCAAAAACTCCTTTCGAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTTGAAAATCGTGAA
261 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
970199 AAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
970264 TTACAAGCCATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCA
391 TTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** ** * * * *
970328 CCTTATCGATCCGTGGCTTGCTTATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTACCCGCCCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTG--C-CC-A----CCTG
* * *
970393 CCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGAC
512 ----CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGAC
* * * * * * * * *
970457 C-GAACTGAGGGTTACGACAGCATGATCAGCAGCACGCACAGGGGGACCCGACCGATCCTCGACT
572 CAG-AC-GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCT
* ** * * * * * *
970521 TGTGCATCCCGTGCCTCCGACCGGCTGAGCACCCGCAAGCTCATTTCGTGGGTCGACTTAGGCAT
635 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** * * * * *
970586 AAAGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAG
700 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * * * * * *
970651 GTTTGCGGCAGCACGTGCTGGGTTCGGGCATGTGCTCGTGCCGCATTTCTCTTCGTC-GGGCACC
765 GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * ** * * *
970715 ATCGTCGGAGGATCGCCAAAGAACCTGACCGACGGCATTGGGGTT-CTGACGATCGGGGGGGCCA
830 ATC-CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATC-GGGGGGCCG
970779 G
892 G
* * * *
970780 GGGGTCTGCGCACATGATTTGCAATGTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAC
1 GGGGTGTGCGCACATGATGTGCGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
970845 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
970910 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
970975 AGTTTTTAGCCGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
971040 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAATGTTTCAAAAATCATGA
260 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
971105 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTATGTGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
971170 TTTACAAGCCATAAAAATGGTATTGGCTCGCAGAAATATGAAGATGTGCCTAAACCCACCTATCA
390 TTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
971235 CCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC---GT----G---G--TGCCCA
* ** * * *
971300 CCTGCCCGCACGTTTTGTCGGTTGGCTTAGGCATACGGAGTCCATTCCGAAGTCTAAGATCAGAC
508 CCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCAGAC
* * * * * * *
971365 C-GAACAAAGGGTTACGGCA-CAGGATCGCCAGCATGTAGAGGGGGACCCGGTCGAGCCTCGGCT
572 CAG-AC-GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCT
971428 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
635 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
971493 ACAGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAC
700 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * * *
971558 GGTTACGACAGTACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACC
765 GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * *
971623 ATCGTCAGAGCATCGCTGGAGAACCTGACCGGCGGCGTTGGGGTTCCGGTGATCGTTGGGGCCGG
830 ATC-CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCG-GGGGGCCGG
* * *
971688 GGGTTGTGCGCACATGATGTGCGAAGAGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCC
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCC
971752 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
971817 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
971882 AGTTTTTAGCCGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
971947 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAATGTTTCAAAAATCATGA
260 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
972012 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTATGTGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
972077 TTTACAAGCCATAAAAATGGTATTGGCTCGCAGAAATATGAAGATGTGCCTAAACCCACCTATCA
390 TTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
972142 CCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC---GT----G---G--TGCCCA
* ** * * *
972207 CCTGCCCGCACGTTTTGTCGGTTGGCTTAGGCATACGGAGTCCATTCCAAGTCTAAGATCAGACC
508 CCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
972272 -GAACAAAGGGTTACGGC-CCAGGATCGCCAGCATGTAGAGGGGGACCCGGTCGAGCCTCGGCTT
573 AG-AC-GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT
972335 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
636 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
972400 CAGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
701 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * *
972465 GTTACGACAGTACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCA
766 GTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
972530 TCGTCAGAGCATCGCTGGAGAACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGCGGCCGG
831 TC-CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGG-GGCCGG
* * * *
972594 GGGTTGTGCGCACATGATGTGCGAAGAGTGCTGGT-TTTGTGCCCTTATATTGGCCCCCTATCCC
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCC
972658 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCT-CTCA
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CA
* **
972721 GTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACGGTTC
129 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * ** * * *
972785 GAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAGGGATCACAACTACAAACTTTA
194 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * ** *
972850 GGGTCAGATAGT-TTTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATTAT
259 GGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* *
972914 GAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
972979 AATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAGGATGTGCCTAAATCCACCTA
388 AATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
973043 CCACCCTATCAATCAATGGCTTGCGCATCCCGTCTCTCCGGCCGCCGTAGTG--C-CC-GCCCGC
452 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGC
* * * * *
973104 TCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCGGACCGAG
517 TCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGA-CGAG
*
973168 GGTTACGGCAGCA
580 GGTTGCGGCAGCA
973181 CATCCTGGGC
Statistics
Matches: 8475, Mismatches: 845, Indels: 386
0.87 0.09 0.04
Matches are distributed among these distances:
850 1 0.00
851 160 0.02
852 300 0.04
853 18 0.00
854 3 0.00
855 8 0.00
856 15 0.00
857 15 0.00
858 26 0.00
859 22 0.00
860 3 0.00
861 5 0.00
862 16 0.00
863 20 0.00
864 6 0.00
865 20 0.00
866 41 0.00
867 14 0.00
868 117 0.01
869 7 0.00
870 27 0.00
871 299 0.04
872 756 0.09
873 9 0.00
874 3 0.00
875 2 0.00
876 2 0.00
877 1 0.00
878 86 0.01
879 23 0.00
880 4 0.00
881 1 0.00
883 9 0.00
884 147 0.02
885 1 0.00
886 3 0.00
887 3 0.00
888 67 0.01
889 8 0.00
890 93 0.01
891 582 0.07
892 141 0.02
893 137 0.02
894 598 0.07
895 1320 0.16
896 7 0.00
897 101 0.01
898 156 0.02
899 6 0.00
900 1 0.00
901 4 0.00
902 4 0.00
903 328 0.04
904 299 0.04
905 45 0.01
906 739 0.09
907 1393 0.16
908 113 0.01
909 56 0.01
910 75 0.01
911 3 0.00
916 2 0.00
917 2 0.00
919 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCACCTGCCCGCTCGT
TTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGC
GGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGCC
GGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGGGGCCGG
Found at i:967055 original size:26 final size:26
Alignment explanation
Indices: 967002--967055 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
966992 TGGGTTGACT
* * * *
967002 TAGGCATACGGAGTTCATTCTCAGTC
1 TAGGCATACGAAATTCATTCCCAATC
967028 TAGGCATACGAAATTCATTCCCAATC
1 TAGGCATACGAAATTCATTCCCAATC
967054 TA
1 TA
967056 AGATCAGACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAATTCATTCCCAATC
Found at i:967927 original size:26 final size:26
Alignment explanation
Indices: 967897--967949 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
967887 GTTGACCTAG
967897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
967923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
967949 G
1 G
967950 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:968830 original size:26 final size:26
Alignment explanation
Indices: 968800--968852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
968790 GTTGACTTAG
*
968800 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
*
968826 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
968852 G
1 G
968853 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:971525 original size:26 final size:26
Alignment explanation
Indices: 971489--971541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
971479 GTTGACTTAG
971489 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
971515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
971541 G
1 G
971542 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:972431 original size:26 final size:26
Alignment explanation
Indices: 972395--972447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
972385 GTTGACTTAG
972395 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
972421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
972447 G
1 G
972448 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:973776 original size:706 final size:706
Alignment explanation
Indices: 972421--974575 Score: 3329
Period size: 706 Copynumber: 3.0 Consensus size: 706
972411 CCCAGTCTAA
* * *
972421 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGGGTTACGACAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACT-GGACCAGACCGAGGGTTACGGCAGCACATCCTGG
* *
972485 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCG-CTGGA
65 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * ** * *
972549 GAACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGCGGCCGGGGGTTGTGCGCACATGATGT
129 GAACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGT
* *
972614 GCGAAGAGTGCTGGT-TTTGTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 GCGAAGAGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTC
*
972678 ACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCT-CTCAGTAGCCATTAAAGTGTCTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC-CAGTAGCCATTAAAGTGTCTGA
*
972741 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACGGTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTT
* * * *
972805 TTGTGCACGCCAACAAAAATA-CAGGGATCACAACTACAAACTTTAGGGTCAGATAGTTTTTCGA
387 TTGTGCACGCCAACAAAAATACCA-GGATCACAACTACCAAGTTTAGGGCCAGATCGTTTTTCGA
* * *
972869 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATTA-TGAAAAATAGAAAACGAGAC
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA-TAGTGAAAAATAGAAAACGAGAC
*
972933 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
* * * *
972998 TGGCATTGGCATGCAGAAATATGAGGATGTGCCTAAATCCACCTACCACCCTATCAATCAATGGC
580 TGGCATTGGCATGAAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
* *
973063 TTGCGCATCCCGTCTCTCCGGCCGCCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
645 TTGCGCATCCCGTCTCTCTGGCCGCCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
973125 GCATAGGGAGTTCATTCCCAGTCTAAGACTGGACCGGACCGAGGGTTACGGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACTGGACCAGACCGAGGGTTACGGCAGCACATCCTGGG
* * *
973190 CTCGGGCATGTGCTGATGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
973255 ACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGC
131 ACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGC
*
973320 GAAGAATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACA
196 GAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACA
973385 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
*
973450 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGT
*
973515 GCACGCCAACAAAAATACCAGGATCACAACTACCAAGTTTAGGGCCAGATCGTTTTTCAAAAAAA
391 GCACGCCAACAAAAATACCAGGATCACAACTACCAAGTTTAGGGCCAGATCGTTTTTCGAAAAAA
*
973580 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGACGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGACGTCTTG
* *
973645 CCATTAAACTTCACGAGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCAATAAAAATGGCAT
521 CCATGAAACTTCACGAGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
973710 TGGCATGAAGAAATATGAGGATGTGCCTAAACCCACATACCACCCTATCAATCCACGGCTTGCGC
586 TGGCATGAAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
*
973775 ATCCCGTCTCTCTGGCCGCCGTAGTCCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
651 ATCCCGTCTCTCTGGCCGCCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* ** *
973831 GCATAGGGAGTTCATTCCCAGTCTAAGACTGGACCAGACCGAGGGTTGTGGCAGCAGATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACTGGACCAGACCGAGGGTTACGGCAGCACATCCTGGG
* * *
973896 CTCGAGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTAGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
973961 ACCTGTCCGACGGCATCGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACCTGATTTGC
131 ACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGC
974026 GAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACA
196 GAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACA
*
974091 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
974156 AGGACATTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * * *
974221 GCACGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAGAACTTTTTTCGAAAAAG
391 GCACGCCAACAAAAATACCAGGATCACAACTACCAAGTTTAGGGCCAGATCGTTTTTCGAAAAAA
* ** *
974286 TTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGACGTCTTG
*
974351 CCATGAAACTTCACGTA-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 CCATGAAACTTCACG-AGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
974415 TTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGAAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * * *
974480 CAACCCGTCCCTCTGGCTGGCGTAGTGCCCGCACACCCACCGCCCGCTCGTTTCATCGGTTGGCT
650 CATCCCGTCTCTCTGGCCGCCGTAGT----G------C-CCGCCCGCTCGTTTCATCGGTTGGCT
974545 TAG
704 TAG
*
974548 GCATACGGAGTTGATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
974576 TAGAATCAGA
Statistics
Matches: 1335, Mismatches: 96, Indels: 27
0.92 0.07 0.02
Matches are distributed among these distances:
704 261 0.20
705 45 0.03
706 970 0.73
707 3 0.00
716 1 0.00
717 55 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACTGGACCAGACCGAGGGTTACGGCAGCACATCCTGGG
CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGC
GAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGT
GCACGCCAACAAAAATACCAGGATCACAACTACCAAGTTTAGGGCCAGATCGTTTTTCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGACGTCTTG
CCATGAAACTTCACGAGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGAAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGCCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:974744 original size:26 final size:26
Alignment explanation
Indices: 974707--974759 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
974697 GTTGACTTAG
974707 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
974733 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
974759 G
1 G
974760 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:977087 original size:879 final size:872
Alignment explanation
Indices: 973831--978900 Score: 4835
Period size: 876 Copynumber: 5.7 Consensus size: 872
973821 GTTGGCTTAG
* * * * * * * * *
973831 GCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCAGACCGAGGGTTGTGGCAGCAGATCCTGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATC-GGACCGGATCGATGGTTGCGGTAGCACATGCTGG
* * * ** *
973895 GCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTAGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCA-C-T----GCATC-ACGGAG
* * * * * *
973960 AACCTGTCCGACGGCATCGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACCTGATTTG
123 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTG
* * *
974025 CGAA-GAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCA
188 C-AATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
974089 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTGAAA
252 CACCCCCTTAAAGGGC---T-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
974154 T-GAGGACATTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTT
313 TAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * *
974218 TGTGCACGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAGAACTTTTTTCGAAA
377 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAAATTCTTCCAAA
* * * ** *
974283 AAGTTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGT
441 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCAT
* *
974347 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
** *
974412 GCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCTT
570 GCATTGGCACACAGAAATATGAAGATGTGCCT------A---AT----C---C-ATCCAC-GCTT
* * ** * * *
974477 GCGCAACCCGTCCCTCTGGCTGGCGTA-G--TGC-CCGCACACCCACCGCCCGCTCGTTTCATCG
617 GCGCATCCCGT--CTCTTGCCAGCGTATGCCTGCGCCGC-CGCCCGCCGCCTGCTCGTTTCATCG
* * * * * * * ** *
974538 GTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATAGAATCAGACCAAGGGTTGTGGTGGC
679 GTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTACGGTAGC
* * * * * *
974603 AGGATCAGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTT-CGCATCCCGCCCTTCTGGC
744 AAGATC-GTAGCACGCAGAGGGGGACCTGATCGATCCCCGG-TTTGCGCATCCCGCCCCTCTGGC
* ** * * * *
974667 CGGCTGACCGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
807 CAGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
974732 A
872 A
* * * * * * * * *
974733 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGGTTGCGGTAGCACATGCTGGG
* * * * * *
974798 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATTGTCAGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCACTG-C--ATCA-CG---GAGA
* ** * ** * * * *
974863 ACTTGACCGATGGCATTGGGGTTTCGGTGATTGGGGGGGCCGGGGGGGTGTGCACATATGATGTG
124 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATTTG
* * * *
974928 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCACTCATCAAACCTTGAGAACTCAC
188 CAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
974993 ACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGCGTCTAAAAT
253 ACCCCCTTAAAGGGC---T-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
975058 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
314 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
975123 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAAAAA
* * *
975188 TTTTAAAAAATCCCGAACCGTAAAATGTTTTGAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
444 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACGAGTCATCTT
*
975253 G-CATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAAATGGC
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCAT-AAAAATGGC
* * * * * **
975316 ATTGGCATACAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTAT-CG-AT-CCATGGCT
572 ATTGGCACACAGAAATATGAAGATGTGCCT-AATCCA--T-CCACGCT-TGCGCATCCCGTCTCT
* * * *** * * * *
975378 TGCGCATCCCGTCT-CTCTG-GCCGACGTAGTGCCCGCCCGCTCGTTTTATCGATTGCCTTAGGC
632 TGC-CA--GCGTATGC-CTGCGCCGCCG-CCCG-CCGCCTGCTCGTTTCATCGGTTGGCTTAGGC
* * ** * * * *
975441 ATACAGACGTTTCAGTT-CCAGTCCTAAGATCAGACTGGATTAGAGGGTGT-GGGCAGCAGGATC
691 ATACGGA-G-TTCA-TTCCCAG-CCTAAGATCGGACCAGA-TCGAGGGT-TACGGTAGCAAGATC
* ** * *
975504 GGACAGCCAC-CAGAGGGGGACCTGGCCGATCCCCGG-TTGCGCATTCCCACCCC-CTGGCCGGC
750 -G-TAG-CACGCAGAGGGGGACCTGATCGATCCCCGGTTTGCGCA-TCCCGCCCCTCTGGCCAGC
* * * *
975566 TTGAGCGCCCGCGACGCTCGTTTCGTGGGTTGACTTAGGCGATACGGAGTTCATTCCCA-ACGAA
811 -TGAGTGCCCGC-ACGCTCGTTTTGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
* * *
975630 G-AT-CGG-G---A----C-G-----GAT-----CGGATCGATGGTTACGGTACCACATGCTGAG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGGTTGCGGTAGCACATGCTGGG
* * *
975674 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCA-C-T----GCATC-ACGGAGA
* * *
975739 ACCGGACCGGCAGCATTGGGGTTCCAAC-AGTCGGGGGGGCCGGTGGGGTGTGCGCACATG-TTG
124 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGGCCGG-GGGGTGTGCGCACATGATT-
** *
975802 TGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGA-CCCCTATCCCTCATCAAACCCCGAGAACT
186 TGCAATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCCTATCCCTCATCAAACCTCGAGAACT
975866 CACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
250 CACACCCCCTTAAAGGGC---T-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
975931 AATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGATTTTTTAGCTGAATTTTT
311 AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
975996 TTTTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTT-GGGCCAAAACTCCTTCCAAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAA
*
976060 AAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
441 AAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
* * * * *
976125 TTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACTATTGTGTGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
* *
976190 GCATTGGCTCACAGAAATATGAAGATGTGCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCT
570 GCATTGGCACACAGAAATATGAAGATGTGCCTAATCCATCCAC-GCTTGCGCATCCCGTCTCT-T
*
976254 GGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
633 -GCCAGCGTA-TGCCTG--CG-CCG-CCGCCCGC-CGCCTGCTCGTTTCATCGGTTGGCTTAGGC
* ** * ** * *
976319 ATACGGAGTTCATTCCCAGTCTAAGATCAGG-CTGGATCGAAGGTTGTGGTAGTAGGATCAGTAG
691 ATACGGAGTTCATTCCCAGCCTAAGATC-GGACCAGATCGAGGGTTACGGTAGCAAGATC-GTAG
* * *
976383 CACACAAAGGGGGACCCGATCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTGCC
754 CACGCAGAGGGGGACCTGATCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTGCC
* *
976448 CGCACGCTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAA
819 CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
976502 ACATACGGAGTTCATTCTTAGTCTCAGATCGGATCGGGGCGATGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGGTTGCGGTAGCACATGCTGGG
* * * * *
976567 CTTGGGCATGTGCTGGTGATGCATTTTTATTCGCCGGGGCACCA-T-CA-CA-GGAGAACCTAAT
66 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCACTGCATCACGGAGAACCTGAC
* * *
976628 CGGCGGCATTGGGGTTCCGATGGTCGGGGGGGCCGGCGGGGTGTGTGCACATGATTTGCAATGGG
131 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATTTGCAATGGG
* * * *
976693 TGCTAGTAATTGGCCCCTTATATTCACCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCC
195 TGCTGGTACTTGG-CCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
976758 TTAAAGGGC-A-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTT
259 TTAAAGGGCTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-T
* *
976821 TTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTATTTTGTGGATGCC
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
976885 AACAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCC-AAAAAATTTTAAA
* * * *
976950 AAATCCCGAACCGCAAAAAGTTTTGAAAACCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * *
977015 ACCTCACGTGATGGCTTAAGGGACCATTGTATGAATATACGAGCCATAAAAATGGCATTGGCACA
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACA
* * * * *
977080 TAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTTATC-AATCCACG--GCTTGCGCATC
581 CAGAAATATGAAGATGTGCCT-AATCCA--T-CCACGCTT-GCGCATCC-CGTCTCTTGC-CA--
* * * * * * *
977141 CCGTCT-CTTTGGTCGGCGTAGCGCCCGCCCGCCTGCTCATTTTATCGGTTGGCTTAGGCATACG
637 GCGTATGC-CT-G-CGCCG--CCGCCCG-CCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACG
** *
977205 GAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTACGACAGCAAGATCGATAGCACGGA
696 GAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTACGGTAGCAAGATCG-TAGCACGCA
* ** * *
977270 GAGGGGGACCTGATCGATCCTCGACTTGCACATCCCGCCCCTCTGG-CAGCTGAGTGCCCCCACG
760 GAGGGGGACCTGATCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTGCCCGCACG
* *
977334 CTCGTTTTGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAA
825 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
977382 GCAAATGAAGTTCACTCTCAGCCTAAGATCGGACCGGACCGAGGGTTGTGGAAGCACATGCT-GG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGGTTGCGGTAGCACATGCTGGG
* * * *
977446 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCGGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCA-C-T----GCATCA-CGGAGA
* * *
977511 ACCTGACCGGCGACATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATCTGC
124 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGC
* **
977576 AATGGGTGC-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
189 AATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
977640 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGGGC---T-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
977704 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTGAGTTTTTAGCTGAATTTTTTTG
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* * * * * *
977769 TGGATACCAACAAAAGTACAAGGGTCCCATCTACCCAAGTTTGGGGGCCAAAAA-T-TTCCAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTT-GGGGCCAAAAATTCTTCCAAAA
* * * * *
977832 AA-TTTAAAAGATCCCGAA-CGTAAAACG-TTTGAAAATCATG-AAAATCGGAAAACGATTTCGT
442 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAT-AGAAAACGA-GTCAT
*
977893 CTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCAATTGTATGAAATATACAAGCCATAAAAA
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATG-AATATACAAGCCATAAAAA
**
977958 TGG-ATTGG--CATGGTAAATATGAA-AGTGTGCCTAAACCCACCTACCACCCTATATCCACGTC
568 TGGCATTGGCACACAG-AAATATGAAGA-TGTGCCT--A---A--T-----CC---ATCCACG-C
*
978019 TTTGCGCATCCCGTCTCTGTTGCCGGCGTA-G-C-GCGCCGCCGCCCG-C-CC-GCTCGTTTCAT
615 -TTGCGCATCCCGTCTC--TTGCCAGCGTATGCCTGCGCCGCCGCCCGCCGCCTGCTCGTTTCAT
* * *
978078 CGGCTTGGCTTCAGGCATATGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTACAG
677 CGG-TTGGCTT-AGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTACGG
* * * * *
978143 TAGCAAGATCGGTAGCACGCAGAGGAGGACCTGGTCGATCCGCGGCTTTTCGTATCCCGCCCCTC
740 TAGCAAGATC-GTAGCACGCAGAGGGGGACCTGATCGATCCCCGG-TTTGCGCATCCCGCCCCTC
978208 T-GCC-GACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
803 TGGCCAG-CTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
978271 GTCTAA
867 GTCTAA
* * * *
978277 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGA-GGATTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGG-TTGCGGTAGCACATGCTGG
* * *
978341 GCTCGGCCATGTGCTGGTGTCACATTTTTCTTCGTCGGGACACCATCACCGGGGCACCATCGTCG
65 GCTCGGGCATGTGCTGGTGACGCATTTTTC-T--TC--G---------CCGGGGCACCA-C-T--
** * * *
978406 GAGCATCATCGGAGAACCTGACCGATGGCATTGGGTTTTCGACGATCGGGGGGGCCGGGGGGTTT
112 --GCATCA-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
* * *
978471 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
174 GCGCACATGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAA
* * * **
978536 CCTTGAGAACTTACACCCTCTTAAAAAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
239 CCTCGAGAACTCACACCCCCTT--AAAGG-GCT-AGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
978601 AAAGT-TACTGAAATAGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACAGTTCGAGTTTTT
300 AAAGTGT-CTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
978664 AGCTGAATTTTTTTGTTCATGCCAAC-AAAATTCAAGGATCACGTCTACCAGGTTTGGGGCC-AA
364 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * ** *
978727 AACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
429 AATTC-TTC-CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATA
* * *
978792 GAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACA
492 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACA
**
978857 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
557 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
978901 AAAACCCACC
Statistics
Matches: 3506, Mismatches: 452, Indels: 410
0.80 0.10 0.09
Matches are distributed among these distances:
871 23 0.01
872 37 0.01
873 50 0.01
874 47 0.01
875 76 0.02
876 430 0.12
877 81 0.02
878 126 0.04
879 204 0.06
880 124 0.04
881 139 0.04
882 87 0.02
883 62 0.02
884 9 0.00
885 2 0.00
886 5 0.00
887 67 0.02
888 41 0.01
889 95 0.03
890 79 0.02
891 93 0.03
892 97 0.03
893 116 0.03
894 118 0.03
895 156 0.04
896 78 0.02
897 35 0.01
898 21 0.01
899 6 0.00
900 7 0.00
901 29 0.01
902 228 0.07
903 281 0.08
904 3 0.00
905 1 0.00
906 8 0.00
907 7 0.00
908 7 0.00
909 19 0.01
910 153 0.04
911 130 0.04
912 101 0.03
913 23 0.01
914 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGATGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCCGGGGCACCACTGCATCACGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGCAATGGGT
GCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGGGCTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAAAAATTTTAAAAAATC
CCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAATCCATCCACGCTTGCGCATCCCGTCTCTTGCCAGCGTATGCCTGCGC
CGCCGCCCGCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAG
ATCGGACCAGATCGAGGGTTACGGTAGCAAGATCGTAGCACGCAGAGGGGGACCTGATCGATCCC
CGGTTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAA
Found at i:978287 original size:26 final size:26
Alignment explanation
Indices: 978251--978303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
978241 GTTGACTTAG
*
978251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
978277 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
978303 G
1 G
978304 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:980746 original size:26 final size:26
Alignment explanation
Indices: 980710--980766 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
980700 GTGGGTTGAC
*
980710 CTAAGCATACGGAGTTCTTTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
980736 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
980762 CTAAG
1 CTAAG
980767 GTCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:982073 original size:893 final size:895
Alignment explanation
Indices: 979039--986728 Score: 8754
Period size: 896 Copynumber: 8.6 Consensus size: 895
979029 CACGTTACGA
* * * * *
979039 CAGCACATGCT-GGCTCGCGGGCATGTGCTGGGTGCCG-AATTTTCTTTGCCGGGGCACCATTGT
1 CAGCACATGCTGGGCT--CGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
*
979102 CGGAGCATC-GTCGGAGAAGCT-ACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
63 CGGAGCATCAG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG
* *
979163 GTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
126 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
979228 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACC
191 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
979293 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
256 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
979358 TTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
321 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *** * * *** *
979423 AAAAATCTTTTTGAAAAAATTTTAAAAAATCTCAAACAACAAAAAGTTTCAAAAATCGTGAAAAA
386 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
979488 TAGAAAACGAGTCGTCTTGCCAT-AAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCT
451 TAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
979552 ACAAGCCATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATCTTCCTAAACCCACCTACCACC
515 ACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
979616 CTATCG----A-----T-C-CA----GTCTCTCTGGCCGACATAGTGCCCGCTCGTCCGCCCGTT
579 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCT
* * * * *
979666 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGTG
640 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* ** * * * * **
979731 TTGCGGTAGCCGGATCGGTAGCACGTAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCTAGC
705 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * *
979796 CCCTCAGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATT
770 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
979861 TCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GAT----------CGAGGGTTGCGG
835 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
* *
979896 CAGCACATGCTGGGCTCAGGCATGTG-TCGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
1 CAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * * * *
979960 GAGCATC-GCTGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGGTCAGAGGGGCTGGGGGGTG
65 GAGCATCAGC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* *
980024 TGCGCACATGATGTGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
129 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
980089 ACCTCGAGAACTCACAGCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
194 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
980154 TAAAGTGTCTAAAATGGGGAAACTTTCTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTT
259 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * **
980219 AGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAA
324 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
980284 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATGG
389 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
980349 AAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
454 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
980414 GCCCTAAAAATGGCATTTGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
519 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
980479 GATCGACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTC
584 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
980544 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAG
649 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAG
** * * * * * *
980609 CAGGATCGGTAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTAGC
714 CAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
980674 TGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCTTTCCCAGTCTA
779 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
980739 AGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGCAG
844 AGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
* * * *
980791 CAGCACATGCTAGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
**
980856 AGCATC-GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTG
66 AGCATCAG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTG
*
980920 TGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
129 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* ** *
980985 ACCTCGAGAACTCACAGCTTCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCAT
194 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
981050 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
259 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
981115 AGCTGAATTGTTCTGTGCATGGCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
324 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** * * * *
981180 ACTCCCCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAACATAG
389 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
981245 AAAACGAGTCGTCTTCCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATTAATTTACAA
454 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
981310 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATC
519 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * *
981375 GATCTACGGCTTGCGCAACTCGTCTCTTTGGACAACGTAGTGCCCGCCCGCCCGCTCGTTTCATC
584 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* *
981440 GGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCAAGGGTTGCGGTAG
649 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAG
* * * * ** * * *
981504 AAGGATCGATAGCACACAGAGTGGGACCCGGCCGATCCCCGGCTTGCGCCTCCTG-CCCTCCGGC
714 CAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
981568 CGGCTGAACGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTA
779 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
981633 AGCATACGGAGTTCATTCCCAGTCTAAAATGAGACCGGACCGAGGGTTGTGG
844 AGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
* * * *
981685 CAGAACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* **
981750 AGCATCATCGGAGAACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
66 AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* *
981815 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCTTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
981880 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
196 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
981945 AAGTG-CGTGAAATGGGGACACTTTTTTCAAATCGTCGCAAAATCTTGTACACTTCGAGTTTTTA
261 AAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
982009 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAA
325 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
982074 TTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
390 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
982139 AAATGAGTCGTCTTACCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
455 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* ** * * * *** *
982204 CAATAAAAATGGCATTGGCATGCAAAAATATGATGATATGCCTAAATGTACCTACCAACCTATCG
520 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
982269 ATCCATGGCGTGTGCATCCCGTCCCTCTGGCTGACGTAGTGCCCGCCTGACCGTCCGCCCGCTCG
585 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-G--C--CCGCCCGCTCG
* * ** ***
982334 ATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGATTGAGGGTT
642 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
* * * * * *
982399 GCGGTAGTAGGATC-AGCAGCACACAGAAGGGGACCCAATTGATCCCCGGCTTACGCATCCCGCC
707 GCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
*
982463 CCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
771 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
982528 CCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGG
836 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
* * * * *
982587 CAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCACTGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * ** * *
982652 AGCATCATCGGAGAACCTGACTGGCGGACATTAGGGTTTCGGTGATCGGGGGGGCCAGGGGGTTT
66 AGCATCAGCGGAGAACCTGACCGGCGG-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
* * * *
982717 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT-TATTCGCCTGCCTATCCCTTATCAA
130 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAA
* * *
982781 ACCTTCGAGAACTCACACCCCCATATAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCA
194 ACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
982846 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
982911 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAA
323 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
982976 AATTACTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATA
388 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
983041 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCCTTG--T--A--T---
453 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
983097 -G-------AAT---A-T-----AC----------A-A---GCCTAAACCCACCTACCAACCTAT
518 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
983131 CGATCCACGGCTTGCGCATCTCGTGTCTCTGGCTGGCGTAGTGCTCGCCCGCTTGCCCGCCCACT
583 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-G-CC-C--GCCCGCCCGCT
* * * *
983196 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGATCGGATCAAGGG
640 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * * * * ** * *
983261 TTACAGCAACAGGATCGGCAGCATGTGGAGGGGGGCCTCG-TCGATCCCCGGCTTGCACATCCCG
705 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-CGATCGATCCCCGGCTTGCGCATCCCG
* *
983325 CCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-
769 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
983378 T---A--C---G---A---AGTTCATTCCTAGTCTAAGATGAGACCAGACCGAGGGTTGCGG
834 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
* * * **
983426 TAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * *
983491 AGCATCATCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGAGGGAGCCGAGGGGGGGT
66 AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGT
* * * *
983556 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTACATTGGCCCCCTACCCCTCATCA
128 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* ** * *
983621 AACCTCAAGAACTCAGGCCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAGTAGCCA
193 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * * * * *
983686 TTAAGGTGTCTGAAATGGGGACATTTTTTTCCAATTGTCACAAAATCTTGTAAACTTCAAATTTT
258 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
983751 TAGCTGAATTGTTTTATGCATGCCAA-AAAAAAACATAAGGATCACGTCTACCAAGTTTGGGGCC
323 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC--AAGGATCACGTCTACCAAGTTTGGGGCC
* * *
983815 AAAATTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAA
386 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
983880 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTCTGAATTTA
451 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** *
983944 GAAGCCACAAAAATGGCATTGTTACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
516 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * **
984009 ATCGATCCGCGGCTTGTGCATCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCTCGTCCGCCTG
581 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CG--C-CC-G
** * * *
984074 CTCGTTTCGTCGGTTGGCTTAGGCATACCTAGTTAATTCCCAGTCTAAGAGCAGACCTA-ATCAA
638 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCAA
* * * * * *
984138 GGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCC-AGTCGATCACCGGCTTGTGCATC
702 GGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATC
* * * *
984202 CCGCCCCTCTGG-CGGCTAAGCGCCCGCACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTT
766 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
984266 CATTCCTAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCG-GATCGGACCGAGGGTTACG
831 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GAGACCGGACCGAGGGTTGCG
984330 G
895 G
* * *
984331 CAGCACATGCTGGGCTCGTGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * * *
984396 AGCATCACCGGAGAACCTGATCGACGACATTGGGGTTCCGACGAT-TGAGGGGCCGGGGGGTGTG
66 AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
*
984460 CGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
984525 CTCAAGAACTCCCACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
196 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
984590 AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
261 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** ** * **
984655 CTGAATTTTTTTGTGCATGGGAACAAAAATACAAGGATCACGTCTAAAAAACTTTCAGGCCAAAA
326 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAA
* **
984720 CTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCATGAAAAAT-GA
390 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
984784 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAA-TTACAAG
455 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
984848 CCAT-AAAATGGCATTGGCATGCA-AAAAATATGCAAAGATGTGCCCT-AACCCAACCTACCACC
520 CCATAAAAATGGCATTGGCA--CACAGAAATATG--AAGATGTG-CCTAAACCC-ACCTACCACC
* * * *
984910 CTATCGATCCACAGCTTGCGCCTCCCCGTCCTCCTTTTGGTCGACGTAGTGCCCGCCCGCCCACC
579 CTATCGATCCACGGCTTGCGCAT-CCCGT-CT-C-TCTGGCCGACGTAGTGCCCGCCCG--C-CC
* * *
984975 GCTCGTTTTGTCCGGTTGGCTTAGGCATACAGGCGTTCATTCCCAGTCTAAGATAAGA-CAGGGA
637 GCTCGTTTCGT-CGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCA--GA
* * ** * *
985039 CCAAGGGTTATG-GGCAGCAGGATCGACAGCATGCAGAGGTAGACCACGACCGCATCCCCGACTT
698 CCAAGGG-T-TGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-CGATCG-ATCCCCGGCTT
* * * * * * *
985103 GCCACATCCCGCCCCTCTGGCTTGGTTGAGCGCCTGTACGCTCATTTCGTCGGGCCTGACTTAAG
759 G-CGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGCACGCTCGTTTCGT-GGG-TTGACTT-AG
* * ** *
985168 GCCATACGGAGTTCACTCCTACGTCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCA
819 G-CATACGGAGTTCATTCCCA-GTC-TAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCG
* * *
985233 AATCGAGGGTTGCAG
881 GACCGAGGGTTGCGG
* * * * *
985248 TAGCACTTGCTGGGCTCGGGCATGTTCTGGGGCCGTATTTTTCTTCGTCGGGGCACCAT---CGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
985310 -G--TC-GCGGAGAACCTGACTGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGCAGGAG
66 AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG--GGTG
* **
985370 TGCGCACTTGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
129 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
985435 ACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCA
194 ACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
985500 TTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
258 TTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
985565 ATAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGACCA
322 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
985630 AAACTCCTT-AAGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
387 AAACTCCTTCCA-AAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * *
985694 ATAGAAAACGAGTCGTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTT
450 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
985759 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACTCACCTACCACCC
515 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
985824 TATCGATCCACGACTTGCGCATCCTGTCTGTCTGGCCGGCGTAATGCCCACCCGCCCGCCCGCCC
580 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G------TGCCCGCCCGCCC
* * *
985889 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGA
637 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCA
* * * *
985954 A-GGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACTCGATCGATCCTCGGCTTACGCATC
701 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* *
986018 CCACCCCTCTGG-CGGACTGAGCGCCCGCACGCTCGTTTCGTGGGGTTGAGTTAGGCATACGGAG
766 CCGCCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACGGAG
*
986082 TTCATTCCCAGTCTAAG-AT-CGGA---C--T----G-----GAT-------TA---AGGGTTGC
829 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGC
*
986121 AG
894 GG
* * * * * * *
986123 CAACACATGCTGGGCTCGGGCATGTGTTGGTGTCACCTTTTTCTTCGTCGGGTCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * ** ** *
986188 AGTATC-GCCGAGAACCTGACCGGCGATATTGGGGTTCCGACGATCGGGTTGGCCGGGGGGTGTA
66 AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* *
986252 CGCACATGATGTGCAATGGGTGCTTGGTACCTGGCCCTTATATTGGCCCCTCTATCCCTCAATCA
131 CGCACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTC-ATCA
*
986317 AAGCCTCGAG-ACTCAC-CACCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCCTTGCCAGTA
193 AA-CCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-C-TGCCAGTA
*
986380 GCCATT-AAGTGGTTCTGAAGATGGGG-CTGCTTTTTTCAAAATGGTCACAAAATCTTGTACACT
254 GCCATTAAAGT-G-TCTGAA-ATGGGGAC-ACTTTTTTC-AAATGGTCACAAAATCTTGTACACT
* * * * * * *
986443 TTGAGGTTTTTTAAGCTGGAAGTTTTTTATGCATACGAAC-AAAATACAGGGCGATGCATGTCCT
314 TCGA-G-TTTTT-AGCT-GAATTTTTTTGTGCATGCCAACAAAAATACA-AG-GAT-CACGT-CT
* * *
986507 ACCCAGGTTT-GGGCCAAAACTCATTCCCAAAAAAATTTTTAAAAAAATCGCGAACC--ACAAAA
371 A-CCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAAA-TTTT-AAAAAATCCCGAACCGTA-AAAA
* ** *
986569 GTTTCGAAAATTGTGAAAAATAGAAAATGCACGTCCCGTCTTGGCCAT-AAACTTCACGTGAAGG
431 GTTTCAAAAATCATGAAAAATAGAAAACG-A-GT--CGTCTT-GCCATGAAACTTCACGTGAAGG
* *
986633 CCTTAAGGGACCTATTGTATGAATTTATAAAAGCCAT-AAAATGGGCAATTGGC-CATGCCGAAA
491 -CTTAAGGGACC-ATTGTATGAA-TT-TACAAGCCATAAAAAT-GGC-ATTGGCACA--CAGAAA
*
986696 TATGAAGATGTGCCTAAACCTACCTACCACCCT
548 TATGAAGATGTGCCTAAACCCACCTACCACCCT
986729 NNNNNNNNNN
Statistics
Matches: 5896, Mismatches: 673, Indels: 481
0.84 0.10 0.07
Matches are distributed among these distances:
838 26 0.00
839 120 0.02
840 143 0.02
841 189 0.03
842 7 0.00
844 2 0.00
846 1 0.00
847 1 0.00
849 1 0.00
850 1 0.00
852 1 0.00
853 2 0.00
855 10 0.00
856 50 0.01
857 17 0.00
858 451 0.08
859 9 0.00
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 208 0.04
865 1 0.00
866 4 0.00
867 6 0.00
868 4 0.00
869 195 0.03
870 2 0.00
871 2 0.00
872 2 0.00
873 24 0.00
874 2 0.00
875 61 0.01
876 5 0.00
877 3 0.00
878 7 0.00
879 35 0.01
880 199 0.03
881 61 0.01
882 49 0.01
883 22 0.00
884 25 0.00
885 25 0.00
886 28 0.00
887 5 0.00
888 5 0.00
889 12 0.00
890 21 0.00
891 4 0.00
892 5 0.00
893 466 0.08
894 263 0.04
895 201 0.03
896 533 0.09
897 1 0.00
898 22 0.00
899 33 0.01
900 83 0.01
901 361 0.06
902 233 0.04
903 247 0.04
904 360 0.06
905 154 0.03
906 52 0.01
907 38 0.01
908 20 0.00
909 32 0.01
910 72 0.01
911 31 0.01
912 118 0.02
913 139 0.02
914 164 0.03
915 74 0.01
916 22 0.00
917 120 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
AGCATCAGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCA
GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCGG
Found at i:982559 original size:25 final size:26
Alignment explanation
Indices: 982511--982562 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
982501 GTTGACTTAG
982511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
982537 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
982562 G
1 G
982563 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:984291 original size:26 final size:26
Alignment explanation
Indices: 984255--984305 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
984245 TTAACTTAGG
* *
984255 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
984281 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
984306 GATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:990343 original size:873 final size:864
Alignment explanation
Indices: 987729--991522 Score: 5126
Period size: 875 Copynumber: 4.4 Consensus size: 864
987719 NNNNNNNNNN
* *
987729 GTTCCGACGATCAGGGGGTGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTG
1 GTTCCGACGATC-GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** *
987794 GCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCCTTT
64 GCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
987859 GAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTATTCAAAT
128 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
987924 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATAC
193 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * *
987989 AAGGATCTCTTCTATCAAGTTTGTGACCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-TCAGAA
258 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAA
* **
988053 CTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
322 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
988118 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
387 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATG
* * *
988183 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGCATACC-GTCTCTCTAG-
452 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCTGTCTCTCTGGC
* *
988246 TAGGCGTA--G--CGCCCG-CC-C-GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTC
516 T-GGCGTAGTGCCCGCCCGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTC
* * * * * * * * * *
988304 ATTCCCAGTCTAAGATCGGACTGGACCAAAGGTTGCGGTAGTAGAATTGACAGCACGTAGAGGGG
580 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
988369 GACCCGACCAATCCCC-AGCTTGCGCATCGCGCCCCTTTGGCTGGTTGAGCGCCAGCACGCTCGT
645 GACCCGACCAATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
** * * * * * *
988433 TTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAACATCGGACCGGACCGAGGGTTA
709 TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTA
* * * *
988498 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGTATTTTTCTTCACCGGGGCACCAT-GC
774 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGC
* *
988562 CGGAGAACCTGACCGGCGGGATTGGC
839 CGGAGAACCTGACCGGCGGCATTGGG
*
988588 GTTCCGACGATCGGGGGGGCCAGGCGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTG
1 GTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
988653 GCCCTTATATTGGCTTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTT
64 GCCCTTATATTGGC-CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
*
988718 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTCAAAT
128 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
988782 GGCCACAAAAACTTGTGCACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
193 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* **
988847 AAGGATCATGTCTACCAAGTTTGGGGTTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
258 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
*
988912 CGCAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
323 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
988977 AGGCTTAAGGTGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
388 AGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATG
* * * * * *
989042 AAGATGTGCCTGAACCCACCTACCACCCAATCGATCCAC-ACTTGCGCATCCCGTCTCTTTGGCC
452 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCT
* * * * * * * *
989106 GGCGTAGTGCCTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
517 GGCGTAGTGCCCGCCCGCCC-ACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCA
* * ** * **
989171 TTCCTAGTCTAAGATCGGACCGGATGGAGGGTTACTACAGCAGGATCGGCAGCACGCAGAGGGGG
581 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * **
989236 ACTCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGTGCCCGCACACTTATTT
646 ACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
989301 CATGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACG
711 CATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACG
* *
989366 GCAGCATATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACATCGTCGG
776 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG--CA----C--
* * *
989431 AGCATCGCCAGAGAACCTGACCAGCGGCATTGCG
833 --CATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * *
989465 GTTCCGGCGATC-TGGGGGCCGGAGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGC
1 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
989529 TCTTATATTGGCCCCTTATCCATCATCAAACCTTAAGAACTCACAGCCCCATAAAGAGCATTTGA
66 CCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
989594 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
130 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
989659 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAA
195 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
*
989724 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTTTAAAAAA-CTCGAACCG
260 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG
* *
989788 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
325 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
989853 GCTTAAGGGACCATTGTGTGAATGTACAAGCCATAAAAAAGGGATTGGTACGTAAAAATATGAAG
390 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAG
*
989918 ATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGC
455 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGC
*
989983 GTAGTGCCCGCCTGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCC
520 GTAGTGCCCGCCCGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCC
* ** * * *
990048 TAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGAGGACCC
585 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
990113 GGCCGATCCCTGACTTGTC-CATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
650 GACCAATCCCCGACTTG-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* * * * * *
990177 GGGTTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGACAGGACCGAGGGTTGCAGTA
714 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCA
* * *
990242 GCACATGCTGGGCTCGGG-ATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACTATCGCTGGAG
779 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG--C-A---C-----
* *
990306 CATCGTCGGGGAACCTGACCGGCGGCATTGGG
833 CATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * *
990338 GTTCCGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTTGC
1 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
990403 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
66 CCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
990468 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGG
130 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * **
990533 TCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTGTTTTGAGCATGCCAAAAAGTATACAA
195 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* ** * *
990598 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAATTTTTTAAAAAATCCCGAACCA
260 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG
* *
990663 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
325 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
990728 GCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATATGAAG
390 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAG
990793 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGC
455 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGC
990858 GTAGTGCCCGCCCGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCC
520 GTAGTGCCCGCCCGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
990923 CAGCCTAAGAAT-AGACCCGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACACAGAGTGGGACC
585 CAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
** * * * * * * **
990987 CGGTCGATCCCCAACATGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCTCATGCTCGTTTTGT
649 CGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
**
991052 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAGTGGACCAAGGGTTACGGCA
714 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCA
*
991117 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAG
779 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAG
* *
991182 AACCTGACTGGCGGCATTGGA
844 AACCTGACCGGCGGCATTGGG
* * * * * *
991203 GTTTCGACGTTCGGGGGGGCGGGGTGGGGGATGTGCACCCATGATGTGCGATGGGTGCTGGTGCT
1 GTTCCGACGATCGGGGGGGC--CG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * * * *
991268 TGGCCCTTATATTGGCCTCCTGTCCCTTATCGAACGC-TGAGAACTCACACCTCCATGAAGAGCA
62 TGGCCCTTATATTGGCC-CCTATCCCTCATCAAAC-CTTGAGAACTCACACCCCCTTAAAGAGCA
* *
991332 TTTGAGATTTTACAGTTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCA
125 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
991397 AACGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTACATGCCAACAAAAT
190 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * ** *
991462 TACAAGCATCACGTCTACAAAGTTTGGGGACAAAACTCCTTCTGAAGAAATTTTAAAAAAT
255 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
991523 GAAAATGGCA
Statistics
Matches: 2598, Mismatches: 293, Indels: 78
0.88 0.10 0.03
Matches are distributed among these distances:
857 2 0.00
858 226 0.09
859 248 0.10
860 1 0.00
862 4 0.00
863 2 0.00
865 46 0.02
866 247 0.10
867 1 0.00
868 9 0.00
869 252 0.10
870 2 0.00
872 34 0.01
873 347 0.13
874 540 0.21
875 563 0.22
876 40 0.02
877 34 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (864 bp):
GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGC
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCG
TAGTGCCCGCCCGCCCACTGCACGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
ACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGAA
CCTGACCGGCGGCATTGGG
Found at i:991858 original size:26 final size:26
Alignment explanation
Indices: 991828--991878 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
991818 TGACTTAGGC
991828 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
991854 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
991879 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:992761 original size:26 final size:26
Alignment explanation
Indices: 992731--992781 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
992721 TGACTTAGGC
*
992731 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGAAGTTCATTCCCAGTCTAAGT
992757 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
992782 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:994253 original size:26 final size:26
Alignment explanation
Indices: 994220--994273 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
994210 TGGGTTGACT
994220 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
994246 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
994272 TA
1 TA
994274 CGATCGGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:994382 original size:185 final size:185
Alignment explanation
Indices: 994064--994463 Score: 480
Period size: 185 Copynumber: 2.2 Consensus size: 185
994054 GTTGGCTTAG
* * **
994064 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGACGGTTATGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGACGGTTACGACAGCAAGATCGACA
** * * * * * *
994129 GCACGTAGAGGTGGACCCAGCCAATCCTCAGCTTGCGCATCCCTCCCGTCTGGCTGGCTGTGCGC
66 GCACACAGAGGAGGACCCAGCCAATCCCCAGCTTACGCATCCCTCCCCTCTGGCCGGCTGAGCGC
* ** *
994194 CCGCATGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTAATTTCATGGGTTGACTTAAGCATACGGAGTTAATTCCCAGTCTAA
* * * * * **
994249 GCATATGGAGTTCATTCCCAGTCTACGATCGGATCGGACC-ATGGGTTACGACAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-CGGTTACGACAGCAAGATCGAC
* * *
994313 AGCACACAGAGGAGGACCCAGTCGATCCCCGGCTTACGCAT-CCTGCCCCTCTGGCCGGCTGAGC
65 AGCACACAGAGGAGGACCCAGCCAATCCCCAGCTTACGCATCCCT-CCCCTCTGGCCGGCTGAGC
* * * * *
994377 GCCCGCACGCTAATTTCGTGGGTTGTCTTAGGCATAGGGAGTTAATTCCTAGTCTAA
129 GCCCGCACGCTAATTTCATGGGTTGACTTAAGCATACGGAGTTAATTCCCAGTCTAA
*
994434 GCATACGGAGTTCATTCCCAGTATAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
994464 AGACCAGATC
Statistics
Matches: 179, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
184 4 0.02
185 175 0.98
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGACGGTTACGACAGCAAGATCGACA
GCACACAGAGGAGGACCCAGCCAATCCCCAGCTTACGCATCCCTCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTAATTTCATGGGTTGACTTAAGCATACGGAGTTAATTCCCAGTCTAA
Found at i:994438 original size:26 final size:26
Alignment explanation
Indices: 994408--994460 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
994398 GTTGTCTTAG
* * *
994408 GCATAGGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTATAA
*
994434 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTAATTCCCAGTATAA
994460 G
1 G
994461 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTATAA
Found at i:995983 original size:896 final size:894
Alignment explanation
Indices: 994320--996217 Score: 2718
Period size: 896 Copynumber: 2.1 Consensus size: 894
994310 GGTAGCACAC
* * *
994320 AGAGGAGGACCC-AGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
1 AGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
994384 CGCTAATTTCGTGGGTTGTCTTAGGCATAGGGAGTTAATTCCTAGTCTAAGCATACGGAGTTCAT
65 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
994449 TCCCAGTATAAGATCAGACCAGATCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
130 TCCCAGTATAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATCTCCAG
* *
994514 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAAAACCTGACCGGTGGCA
195 GTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCTGGAAAACATGACCGGTGGCA
* *
994579 TTGGGGTTCCGGTGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
260 TTGGGGTTCCGGTGATCGGGGGGCCAGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTAC
*
994644 TTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCA
325 TTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* **
994709 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATCGGGACGTTTTTTTCA
390 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCA
*
994774 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
455 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAA
* *
994839 TACAAGGATCACGTGTACCAAGTTTGGGGGCACAATACCTTCCGAAAAAATTTTAAAAAATCCCC
520 TACAAGGATCACGTCTACCAAGTTTGGGGGCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCC
** * *
994904 AACCACAAAAAGTTTTGAATATCGTGAAAAATAGAAAACGAGTTGTCTTGCCACGAAACTTCACA
585 AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACA
* * *
994969 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATA
650 TGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
995034 TAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTG-
715 TAAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGA
* *
995098 GCCGTCGT-AG-TGACCACCCACTCATTTCGTCGGTTGGCTTAGGAATACAGAGTTCATTCCCAG
780 GCCGTAGTCAGCTGACCACCCACTCATTTCATCGGTTGGCTTAGGAATACAGAGTTCATTCCCAG
* * * *
995161 TCTAAAATCAGACC-AGACCGAAGGTTGCGGCAGTAGGAAT-GGCAGCAAGT
845 TCTAAAATCAGACCGA-ACCGAAGGTTGCGACAGCAGG-ATCGACAACAAGT
* * * *
995211 GGGGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTAC
1 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
995276 GCTCGA-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCAT
66 GCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
995340 TCCCAGTTTAAGATCAGACCGGACCCAA-GGTTGCGACAGCAGATGCTTGGCTTGAGCATCTCCA
130 TCCCAGTATAAGATCAGACCAGA-CCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATCTCCA
* * *
995404 GGTGCTGCATTTTTCTTCATCGTGGCACCATCGTCGGAGCATCGCTGGAGAACATGACCGGTGGC
194 GGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCTGGAAAACATGACCGGTGGC
* * *
995469 ATTGGGGTTTCGGTGATTGGGGCGGCCGGGGGGAGGGGTGTCCGCACATGATGTGCGATGGGTGC
259 ATTGGGGTTCCGGTGATCGGGG-GGCC---AGG-GGGGTGTCCGCACATGATGTGCGATGGGTGC
* *
995534 TGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
319 TGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
995599 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
384 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATCGGGACACTT
* *
995664 TTTTCAAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
449 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
*
995729 CAAAAATACAAGGATCACGTCTACCATGTTT-GGGGCAAAA-ACTCCTTCCGAAAAAATTTTAAA
514 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAATA--CCTTCCGAAAAAATTTTAAA
*** * *
995792 AAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
577 AAATCCCCAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAA
*
995857 ACTTCACGTGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATG
642 ACTTCACATGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
995922 CAGAAATATGAAGATGTGCCTAAACCTACCTACCATCCTATCAATCCACGACTTACGCATCCCGT
707 CAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTACGCATCCCGT
* * * * * * * * *
995987 CTTTCTGACAGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
772 CTCTCTG--AGCCGTAGT--CAG-CTGACCACCCACTCATTTCATCGGTTGGCTTAGGAATACAG
* * * * *
996052 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGATAGCAGGATCGACAACATGT
832 AGTTCATTCCCAGTCTAAAATCAGACCGAACCGAAGGTTGCGACAGCAGGATCGACAACAAGT
** * * *
996115 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATGCCGCCCCTCTGGCCGACTGAGCGCCTGCAC
1 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
996180 GCTCATTTCGTGGTTTGACTTAGGCATACAGAGTTCAT
66 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
996218 CAGACTTTGT
Statistics
Matches: 887, Mismatches: 99, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
891 242 0.27
892 8 0.01
894 1 0.00
895 10 0.01
896 443 0.50
899 6 0.01
902 1 0.00
903 3 0.00
904 172 0.19
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTATAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATCTCCAGG
TGCTGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCTGGAAAACATGACCGGTGGCAT
TGGGGTTCCGGTGATCGGGGGGCCAGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACT
TAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGGCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCCA
ACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACAT
GAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
AAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGAG
CCGTAGTCAGCTGACCACCCACTCATTTCATCGGTTGGCTTAGGAATACAGAGTTCATTCCCAGT
CTAAAATCAGACCGAACCGAAGGTTGCGACAGCAGGATCGACAACAAGT
Found at i:996614 original size:26 final size:26
Alignment explanation
Indices: 996584--996636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
996574 GTTGACTTAG
*
996584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
996610 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
996636 G
1 G
996637 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:999183 original size:395 final size:394
Alignment explanation
Indices: 998449--999213 Score: 1081
Period size: 395 Copynumber: 1.9 Consensus size: 394
998439 GTGAAGGCTG
*
998449 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGT
* * * *
998514 GCCTAAACCTACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCAGGCATAG
66 GCCTAAACCCACCTACCACCATATCAATCCACGACTTACGCAACCCGTCTCTCTGGCAGACATAG
*
998579 TGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
131 TGCCCGCCCG-C--CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
*
998644 AGATCGGACCGAACTGAGGGTTGCAGTAGCAGGATCAACAGCACGTAGAGGGGGACCCGACCGAT
193 AGATCGGACCGAACTGAGGGTTGCAGTA--AGGATCAACAGCACGCAGAGGGGGACCCGACCGAT
** * *
998709 CCCCAGCTTGTGCATGCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGCGGTTTGAC
256 CCCCAGCTTGTGCATGCCGCCCCTCTAACCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGAC
*
998774 TTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATCAGACTTTGTTTTGAATGTG
321 TTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATCAGACTTTGTTTTGAATGTG
998839 GTTTGACTT
386 GTTTGACTT
*
998848 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGT
* * * * *
998913 GCCTAAACCCACCTAGCACCATATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGTC-GACGTA
66 GCCTAAACCCACCTACCACCATATCAATCCACGACTTACGCAACCCGTCTCTCTGG-CAGACATA
*
998977 GTGCCCGCCCG-CCCGCTCATTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
130 GTGCCCGCCCGCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * *
999041 ATTGGACCGGA-TCGAGGGTTATGACAGT-AGGATCGGCAGCACGCAGAGGGGGACTCGGCTGAT
195 ATCGGACCGAACT-GAGGG-T-TG-CAGTAAGGATCAACAGCACGCAGAGGGGGACCCGACCGAT
* * * ** *
999104 CCCCGGCTTGTGCAT-CCTGCCCCTCTAACTGGCTGAGCGCCTGCACTTTCGTTTCGTGGGTTGA
256 CCCCAGCTTGTGCATGCC-GCCCCTCTAACCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGA
* * *
999168 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTCAT
320 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCAT
999214 TCGCAGTCTA
Statistics
Matches: 325, Mismatches: 35, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
394 3 0.01
395 187 0.58
396 1 0.00
397 2 0.01
398 4 0.01
399 127 0.39
400 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (394 bp):
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGT
GCCTAAACCCACCTACCACCATATCAATCCACGACTTACGCAACCCGTCTCTCTGGCAGACATAG
TGCCCGCCCGCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCGAACTGAGGGTTGCAGTAAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCCA
GCTTGTGCATGCCGCCCCTCTAACCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATCAGACTTTGTTTTGAATGTGGTTTG
ACTT
Found at i:1000959 original size:26 final size:26
Alignment explanation
Indices: 1000907--1000959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1000897 GTTGACTTAG
*
1000907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1000933 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1000959 G
1 G
1000960 ATTAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1001844 original size:159 final size:159
Alignment explanation
Indices: 1001550--1001844 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 159
1001540 CCCACCTACC
* ** * * *
1001550 ACCCTATCGATCCACAGCTTGCGCATCCCTTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTT
1 ACCCGATCGATCCACAGCTTGCGCATCCCGCCCCTCTGGCCGGTGTAGCGCCCGCACGCTCGTTT
* * * * ** *
1001615 GGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTGTG
66 GGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
1001680 GCAGCAAGATCGGAAGCACGCAGAGGGGG
131 GCAGCAAGATCGGAAGCACGCAGAGGGGG
* * * *
1001709 ACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG-AGCGCCCGCATGCTCGTT
1 ACCCGATCGATCCACAGCTTGCGCATCCCGCCCCTCTGGCCGG-TGTAGCGCCCGCACGCTCGTT
* * *
1001773 TTGTAGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
65 TGGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
1001838 GGCAGCA
130 GGCAGCA
1001845 CATGCTGGGC
Statistics
Matches: 115, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 113 0.98
160 2 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
ACCCGATCGATCCACAGCTTGCGCATCCCGCCCCTCTGGCCGGTGTAGCGCCCGCACGCTCGTTT
GGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCAAGATCGGAAGCACGCAGAGGGGG
Found at i:1002715 original size:26 final size:26
Alignment explanation
Indices: 1002678--1002729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1002668 GTTGACTTAG
1002678 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
1002704 GCATAC-GTAGTTCTTTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
1002730 AATCAAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:1005368 original size:26 final size:26
Alignment explanation
Indices: 1005332--1005384 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1005322 GTTGACTTAG
1005332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1005358 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1005384 G
1 G
1005385 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1006253 original size:26 final size:26
Alignment explanation
Indices: 1006223--1006275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1006213 GTTGACTTAG
*
1006223 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1006249 GCATATAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1006275 G
1 G
1006276 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1006865 original size:890 final size:887
Alignment explanation
Indices: 1004474--1009788 Score: 7047
Period size: 887 Copynumber: 6.0 Consensus size: 887
1004464 GTTGACTTAG
* * * * *
1004474 GCATAC-GAAGTTCATTCCCAGTCTAAGAACAGATCGGACAGAGGGTTACGGCAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1004538 GCTCGAGCATGTGCTGGTGCAGCATTTTTCTTCATCAGGG-CACCATCGCCGGAGAACCTGACCG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCACCATCACCGGAGAACCTGACCG
* * * * * *
1004602 GCGGCATTGGGGTTTCGATGATCGGGGGGACCAAGGGTGGTGTGTGCACATGATGTACGATGGGT
130 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1004667 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCCCACCCCCTT
193 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
1004732 AAAGAGCATTTGACATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATGGCGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1004797 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
1004862 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
1004926 AAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATTAA
453 AAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1004991 ACTTCGCGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * **
1005056 TAGAAATATGAGGATGTGCCTAGACCCACCTACCACCCTATCGATGAACGGCTTGCGCATCCCGT
583 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
1005121 CTCTTTGGCCGGCGTAGTGCCCGCCCG--CCCGCTCGTTTCATCGGTCGGCTTAGGTATACGGAG
648 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
1005184 TTCATTACCAGTCTAAGATCGGAC-CGAACTGAGGGTTGTGGTAGCAGGATC-GAAGCAAGCAGA
713 TTCATTCCCAGTCTAAGATCGAACTAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * * *
1005247 GGAGGACCCGGCCGATCCCCGGCTTGCACATGCCGCCCCTCTGGCCGACTGACCGCCTGCACGCT
777 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
1005312 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1005358 GCATACGGAGTTCTTTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGGTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1005423 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG----CATCACCGAAGAACCTGACAGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCACCATCACCGGAGAACCTGACCGG
*
1005484 CGGCATTGGGGTTCCGACGATCGGGGCGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1005549 TGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
1005614 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTTAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1005679 TTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * * *
1005744 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
1005809 AATCCCGAACCGTAAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAA
454 AATCCTGAACCGT-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
1005873 ACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAGGCCATAAAAATTGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
1005938 CAGAAATATGAAGATGTACCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCACATCCCGT
583 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
1006003 CTCTCTGGCTGGTGTAATGCTCGCCCGCCCGCCCACCCGCACGTTTCGTCGGCTGGCTTAGGCAT
648 CTCTCTGGCCGACGT-A-G-T-GCCCGCCCG-CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
1006068 ACAGAGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGGGTTACGGCAGCAGGATCGGTAGCAC
707 ACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
*** * * * *
1006133 GCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCTGCCCCTCTCGCAGGCTGAGCACCCGC
772 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
1006198 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
837 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1006249 GCATATAGATTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1006314 CTTGGGCATGTGCTGGTGCCGGATTTTACTTCATC-GGGCCACCATCACCGGAGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCACCATCACCGGAGAACCTGACCGG
* * ** *
1006378 CGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
131 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1006443 AGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
196 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1006508 GAGCATTTGAGATTTTACAGGTTTGTTGACAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1006573 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1006638 AAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAGTTAAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
1006702 TCCTGAACCGCAAAAA-TTTTGAAACTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
456 TCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1006766 TCACGTGAAGGCTTAAGGGACCATTGTATAAATTTATAAGCCATAAAAATGGCATTGGCACGCAG
521 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
1006831 AAATGTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTC
586 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
1006896 TCTAGCTGACGCAGTGCCCGTCCGCCCGCCCGCCTGCCCGTTCGTTTCGTCAGTTGGCTTAGGCA
651 TCTGGCCGACGTAGTG--C--CCGCCCGCCC-CC-G--C--TCGTTTCGTCGGTTGGCTTAGGCA
* *
1006961 TACGGAGTTCATTCCCAGTCTAAGATC-AGACTAGACT-ACGGGTTGCAGCAGCAGGATTGGCAG
706 TACGGAGTTCATTCCCAGTCTAAGATCGA-ACTAGACTGA-GGGTTGCGGCAGCAGGATCGGCAG
* * * ** * * *
1007024 CACGTAGAGGGGGACTCGACCGATCCCCGACTTGCTTATCCCACCCATCTGGCCAGCTGAGCGCC
769 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
**
1007089 CATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
834 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1007139 -C-T--A-AG---ATT--C---C--AGATC--A---GACAGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1007184 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG--CCA----C----CATCACCGGAGA
* * * * * * * * *
1007249 ACTTGGCCGGCAGCATTAGGGTTCTGACGATCGAGGGGGCTGGGGGGTGTGCACACATGATCTGC
121 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
1007314 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
186 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1007379 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1007444 GGGAGACTTTTTTCAAATCGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * * *
1007509 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGCTTGGGGCGAAAAATCCTTCCGAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * **
1007574 ATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
445 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
1007639 TCCGTGAAACTCCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCA
510 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
1007704 TTAGAAATCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
575 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1007769 CATCCGGTCTCTCTGGCCGACGTAGT----GCCCG--CCCGCTCGTTTCATTGGTTGGCTTAGGC
640 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* **
1007828 ATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTGCGGCAGCAGGATCAACAG
705 ATACGGAGTTCATTCCCAGTCTAAGATCGAACT-AGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
1007892 CATGCATAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCC
769 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
1007957 CGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1008011 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCATATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1008076 CTCGGGCATGTGCTGGTGCCACAGTTTTGTTTACCGGGGCACCGTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGG----G-C--C--ACCATCACCGGAGA
* * * * *
1008141 ACCTGACCGACGGCGTTGGGGTTCCGATGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGT
121 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1008205 GATGGGTGCT-GCTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
186 GATGGGTGCTAG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1008269 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
1008334 GGGGAAACGTTTTTCAAATGGTCACAAAATCTTGTAGACCTCGAGTTTGTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1008399 TGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
1008463 ATTTTAAAAAAT-CTAGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
445 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
1008527 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATCAATTTACAAGCCATAAAAATGGG
509 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GG
* *
1008592 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
573 CATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1008657 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTT
638 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC--CCGCTCGTTTCGTCGGTTGGCTT
* ** * * *
1008722 AGGCATA-GGAGTTCATTCCTAGTCTAAGATC-AGACCGGACTGAGGGTGGCGGCAGTAAGATCG
701 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTAGACTGAGGGTTGCGGCAGCAGGATCG
** * * *
1008785 GCAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATGCTGCCCCTCTGGCCGGCTGAG
765 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
1008850 CACCCGCACGCTTGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
1008908 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
1008973 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG-CACCATCGTCGGAGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCACCATCACCGGAGAACCTGACCGG
* **
1009037 TGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTATGATGGGTGCT
131 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1009102 AGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAA
196 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1009167 GAGCATTTGAGATTTTACAGG-TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1009231 TTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * *
1009296 AAAAATACAAGGACCATGTTTACCAGGCTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** **
1009361 TCCTAAACTATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTAT-CCATGAAAC
456 TCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT-TGCCATGAAAC
* * *
1009425 TTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACA
520 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
1009490 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGGTCT
585 GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* **
1009555 CTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTATTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
650 CTCTGGCCGACGTAGTGCCCGCCCGCCC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
1009620 TTCATTCCCAGTGTAAGATCGGA-TCAGACTGAGGGTTACGGCAGCAAGATCGACAGCACGTAAA
713 TTCATTCCCAGTCTAAGATCGAACT-AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
*** * * * *
1009684 AAAGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTTGCCGACTGAGCGCCCGCATGCT
777 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
1009749 AGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCA
842 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
1009789 CTCGAAGATC
Statistics
Matches: 3882, Mismatches: 446, Indels: 203
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 171 0.04
869 1 0.00
870 57 0.01
871 3 0.00
872 1 0.00
873 7 0.00
874 2 0.00
875 5 0.00
876 5 0.00
877 4 0.00
880 202 0.05
881 306 0.08
882 301 0.08
883 33 0.01
884 262 0.07
885 6 0.00
886 273 0.07
887 429 0.11
888 10 0.00
889 167 0.04
890 362 0.09
891 419 0.11
892 155 0.04
893 205 0.05
894 218 0.06
896 5 0.00
897 243 0.06
898 28 0.01
900 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCACCATCACCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1008017 original size:26 final size:26
Alignment explanation
Indices: 1007988--1008037 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1007978 GACTTAGGCA
1007988 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
1008014 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1008038 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:1008918 original size:26 final size:26
Alignment explanation
Indices: 1008882--1008934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1008872 GTTGACTTAG
*
1008882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1008908 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1008934 G
1 G
1008935 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1009434 original size:887 final size:890
Alignment explanation
Indices: 1001789--1009788 Score: 9669
Period size: 902 Copynumber: 9.0 Consensus size: 890
1001779 GTTGACTTTG
* **
1001789 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
***
1001854 CTCGGGCATGTGCTGGTGGTGCATTTTTCTTCACCGGGGCACCATCATCGAAGCATCGCCGAAGC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG------CA-C----CAT---CG--G-
* * * * * * *
1001919 ATCGCCAGAGAATCTGCCCGACGGAATTTGGGTTCCGATGATCCGGGGGG-CGGATGGGTGTGTG
114 ATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG--GGG-GTGTG
* * *
1001983 TGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAAC
173 CGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
1002048 CTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTA
238 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
1002113 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGTGTTTTTAG
303 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* ** * **
1002178 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGTGAAAAC
368 CTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAC
* * ** *
1002243 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
433 TCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
1002308 AGCGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGC
498 AACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
1002373 CATCAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
563 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
1002438 TCCACGGCTTACGCATCCCGTCTCTCTGGCTGGTGTAGTGCCGTCCCCCCGCCCG-CTCGCTCGT
628 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CCGCCCGCCCGTC-CGCTCGT
* *
1002502 TTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTT-
689 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * * *
1002566 CTAGTAGCAGGATTGGCAACACACAGAGGGGGACCTGGTCAATCCCCGGCTTGCGCATCCCGCCC
754 C-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
1002631 CTCTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
818 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
1002696 TAGTCTAA
883 CAGTCTAA
* * * * ** * * * *
1002704 GCATACGTAGTTCTTTCCTAGTCTAA-AATCAAATCGGACCGAGGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-AGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1002768 GCTTGAGCATGTGCTGGTGCCGCAGTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGCAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC-G-G-ATCG--G-AG
* * * * *
1002833 AACCTGACCGACGGCATTGAGGTTTCAACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTG
121 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1002898 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC-CTGAG-ACATC
186 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAAC-TC
* * *
1002961 ACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
249 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1003026 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
314 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
* * *
1003091 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCT-CTATTCGAA
379 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCT-TCCGAA
* * * * *
1003155 AAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
443 AAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
1003220 CTTGCCATGATACTTCACGTGAAGGCTTAATAGACCATTGTATGAATTTACAAGCCATAAAAATG
508 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * * *
1003285 GCATTGGCACTTAGAAATATGAAGATGTGCTTAAACCCACCTATCACCCTACCGATCGATGGCTT
573 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
1003350 GCTCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTATTTTCGTCGGTTGGCT
638 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
* * * * ** * *
1003415 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAAGGTTGCGATAGAAGGATCA
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * *
1003480 GTAGCACGCAGAGGGGGA-TCGAGACGATCCCCGGCTTGTG-ATCCTGCCCTTCTGGCCGGCTGA
768 GCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
1003543 GCGCCCGCACACTCATTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTCTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * * *
1003602 GCATACGTAGTTCTTTCCCAATCTAAGATCGGACCGGATCGAGGGTTACAGCAACACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
1003667 CTCGAGCATGTGCTGGTGTCGCATTTTGCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC-G-G-A---TCGGAGA
* * * *
1003732 ACCTGACCTGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGAGGGGGGTCTGCACACATGATG
122 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATG
*
1003797 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
184 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * * *
1003862 ACACCGTCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGACAGTAGCAATTAAAATGTCTGAA
249 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
1003927 ATGGAGACACGTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTT
314 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
* * * * * * * *
1003992 TATGCATCCCAACAAAAATACAAGGATCATGACTACCATGTTTGGGGCCACAACTTCTTCCGAAA
379 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
1004057 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGACAATCGTGAAAAATAGAAAACGAGTCGT
444 AAATTTTAAAAAATCCT-AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * * * *
1004121 CTTGCCATGAAACTTCATGTGACGGCTTAAAGCACCATTGTATGAATTTACACGCCATAAATATG
508 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1004186 GCATTGGCATACAGAAATATGAAGATGTGCCTAAGCCCACCTGCCACCCCATCGATCCACAGCTT
573 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * * * * *
1004251 GCGCATCTTGTCTCTCTAGCCGACGTAGT----GCCCGCCCGTCTGGTCATTTCATCTGCTGGCT
638 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * ** *
1004312 TTGGTATACGGAGTTAATTCCCAATCTAAGATCGGACCGGACCGAGGGTTAAGCCAGCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
*
1004377 GCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
768 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
1004442 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
833 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1004500 G-A-AC--AG---------A-TC-------GGAC---A--GAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1004539 CTCGAGCATGTGCTGGTG-CAGCATTTTTCTTCATCAGGGCACCATC-G-CCGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACC
* * * * * *
1004601 GGCGGCATTGGGGTTTCGATGATCGGGGGGACCAAGGGTGGTGTGTGCACATGATGTACGATGGG
130 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
1004666 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCCCACCCCCT
193 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
1004731 TAAAGAGCATTTGACATTTTACAGGTTTGCTGACAGTAGCAATTAAAGTGTCTGAAATGGCGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1004796 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
* * *
1004861 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * * * *
1004925 AAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATTA
453 AAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGA
* *
1004990 AACTTCGCGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * **
1005055 ATAGAAATATGAGGATGTGCCTAGACCCACCTACCACCCTATCGATGAACGGCTTGCGCATCCCG
583 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
1005120 TCTCTTTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCATCGGTCGGCTTAGGTATACG
648 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
1005181 GAGTTCATTACCAGTCTAAGATCGGACC-GAACTGAGGGTTGTGGTAGCAGGATC-GAAGCAAGC
713 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* ** * * * * *
1005244 AGAGGAGGACCCGGCCGATCCCCGGCTTGCACATGCCGCCCCTCTGGCCGACTGACCGCCTGCAC
777 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
1005309 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1005358 GCATACGGAGTTCTTTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
1005423 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CATC--ACCGAAGAACCTGACAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACCG
*
1005483 GCGGCATTGGGGTTCCGACGATCGGGGCGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
1005548 CTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
195 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
1005613 AAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTTAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1005678 TTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCC
* * * * *
1005743 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** *
1005808 AAATCCCGAACCGTAAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTC-TCGCCATG
454 AAATCCTAAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTC-CCATG
* * *
1005871 AAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAGGCCATAAAAATTGCATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
1005936 TGCAGAAATATGAAGATGTACCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCACATCCC
582 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * *
1006001 GTCTCTCTGGCTGGTGTAATGCTCGCCCGCCCGCCCACCCGCACGTTTCGTCGGCTGGCTTAGGC
647 GTCTCTCTGGCCGGCGT-A-G-T-GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
1006066 ATACAGAGTTCATTCCCAGTCTAAGAT-TGAACTAGACCGAGGGTTACGGCAGCAGGATCGGTAG
708 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
1006130 CACGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCTGCCCCTCTCGCAGGCTGAGCACC
772 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
1006195 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * **
1006249 GCATATAGATTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
1006314 CTTGGGCATGTGCTGGTGCCGGATTTTACTTCATCGGGCCACCATC--ACCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACCG
* * ** *
1006377 GCGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
131 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1006442 TAGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
196 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1006507 AGAGCATTTGAGATTTTACAGGTTTGTTGACAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
1006572 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* * * * *
1006637 CAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAGTTAAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** * * *
1006701 ATCCTGAACCGCAAAAA-TTTTGAAACTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
456 ATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAAC
* * *
1006765 TTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTATAAGCCATAAAAATGGCATTGGCACGCA
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
1006830 GAAATGTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCT
586 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
1006895 CTCTAGCTGACGCAGTGCCCGTCCGCCCGCCCGCCTGCCCGTTCGTTTCGTCAGTTGGCTTAGGC
651 CTCTGGCCGGCGTAGTG--C--CCGCCCGCCCG--T--CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
1006960 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-ACGGGTTGCAGCAGCAGGATTGGCAG
708 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCGGCAGCAGGATCGGCAG
* * * * ** * * *
1007024 CACGTAGAGGGGGACTCGACCGATCCCCGACTTGCTTATCCCACCCATCTGGCCAGCTGAGCGCC
772 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
**
1007089 CATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1007139 -C-TA---AG---ATT--C---C--AGA-T---C-AGACAGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
1007184 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT---C-G-G-AT---CGGAGA
* * * * * * * * *
1007249 ACTTGGCCGGCAGCATTAGGGTTCTGACGATCGAGGGGGCTGGGGGGTGTGCACACATGATCTGC
122 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
1007314 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
187 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1007379 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
1007444 GGGAGACTTTTTTCAAATCGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTG
* * *
1007509 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGCTTGGGGCGAAAAATCCTTCCGAAAAA
381 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAA
* *
1007574 ATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
446 ATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
1007639 TCCGTGAAACTCCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCA
511 CCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1007704 TTAG-AAATCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
576 TTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1007768 GCATCCGGTCTCTCTGGCCGACGTAGT----GCCCG--C--CCGCTCGTTTCATTGGTTGGCTTA
640 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
* * **
1007825 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCAGGATCAAC
705 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
1007890 AGCATGCATAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCG
770 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
1007955 CCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
1008011 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1008076 CTCGGGCATGTGCTGGTGCCACAGTTTTGTTTACCGGGGCACCGTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA-C--CATC-G-G-AT---CGGAGA
* * * * *
1008141 ACCTGACCGACGGCGTTGGGGTTCCGATGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGT
122 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1008205 GATGGGTGCT-GCTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
187 GATGGGTGCTAG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1008269 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
251 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
1008334 GGGGAAACGTTTTTCAAATGGTCACAAAATCTTGTAGACCTCGAGTTTGTAGCTGAATTTTTTTG
316 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
* * *
1008399 TGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
381 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAA
**
1008463 ATTTTAAAAAAT-CTAGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
446 ATTTTAAAAAATCCTA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
1008527 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATCAATTTACAAGCCATAAAAATGGG
510 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GG
**
1008592 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
574 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
1008657 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTT
639 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
1008722 AGGCATA-GGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTGGCGGCAGTAAGATCGG
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * *
1008786 CAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATGCTGCCCCTCTGGCCGGCTGAGC
769 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
1008851 ACCCGCACGCTTGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1008908 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
1008973 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-G-TCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACCG
* **
1009036 GTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTATGATGGGTGC
131 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1009101 TAGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAA
196 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1009166 AGAGCATTTGAGATTTTACAGG-TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATTGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1009230 TTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* * * * *
1009295 CAAAAATACAAGGACCATGTTTACCAGGCTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
**
1009360 ATCCTAAACTATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTAT-CCATGAAA
456 ATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT-TCCCATGAAA
* *
1009424 CTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACAC
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
*
1009489 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * **
1009554 TCTCTGGCCGACGTAGTGCCTGCCCGCCCG-CCTATTCGTTTCGTCGGTTGGCTTAGGCATACGG
650 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *
1009618 AGTTCATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTACGGCAGCAAGATCGACAGCACGTAA
714 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
*** * * * * *
1009683 AAAAGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTTGCCGACTGAGCGCCCGCATGC
779 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
1009748 TAGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCA
844 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
1009789 CTCGAAGATC
Statistics
Matches: 6187, Mismatches: 745, Indels: 334
0.85 0.10 0.05
Matches are distributed among these distances:
858 111 0.02
859 309 0.05
860 215 0.03
861 44 0.01
862 2 0.00
863 5 0.00
866 1 0.00
868 175 0.03
869 3 0.00
870 65 0.01
871 3 0.00
872 62 0.01
873 2 0.00
874 4 0.00
875 3 0.00
876 5 0.00
877 7 0.00
878 1 0.00
879 3 0.00
880 202 0.03
881 302 0.05
882 297 0.05
883 37 0.01
884 230 0.04
885 7 0.00
886 268 0.04
887 429 0.07
888 12 0.00
889 167 0.03
890 353 0.06
891 426 0.07
892 164 0.03
893 202 0.03
894 226 0.04
895 3 0.00
896 4 0.00
897 359 0.06
898 321 0.05
899 113 0.02
900 3 0.00
901 445 0.07
902 454 0.07
903 5 0.00
904 43 0.01
905 4 0.00
907 1 0.00
908 1 0.00
909 2 0.00
914 2 0.00
915 85 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1011524 original size:26 final size:26
Alignment explanation
Indices: 1011488--1011540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1011478 GTTGAATTAG
*
1011488 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1011514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1011540 G
1 G
1011541 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1015362 original size:26 final size:26
Alignment explanation
Indices: 1015326--1015378 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1015316 GTTGACTTAG
1015326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1015352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1015378 G
1 G
1015379 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1016264 original size:26 final size:26
Alignment explanation
Indices: 1016225--1016306 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
1016215 TGAGTTGACT
*
1016225 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1016251 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
1016277 TAAGCATACGGAGTTCATTCACAATC
1 TAAGCATACGGAGTTCATTCCCAGTC
1016303 TAAG
1 TAAG
1016307 ATCAGATCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:1016663 original size:918 final size:914
Alignment explanation
Indices: 1015326--1017891 Score: 3364
Period size: 881 Copynumber: 2.8 Consensus size: 914
1015316 GTTGACTTAG
* *
1015326 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAATCTAAGATCAGATC-GAT
* * *
1015391 CGATGGTTGCGGTAGCAGATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
64 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * * * * *
1015456 CACCATCGCCGGAGCATTGTTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGGTTGGGGGGT
129 TAGC-TCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGG-
**
1015521 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
191 GGCCGGTGTGCG---ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
* *
1015586 CTCATCAAATCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCA
253 CTCAT-AAA-CCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
1015651 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
316 GTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
1015716 GAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACTAGGATCACGTCTACCAAGTTTG
380 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
1015781 GGGCCAAAACTCCTTCCGGAAAAATTTTAAAAAACCCTGAACTGCAAAAAGTTTTGAAAATCGTG
445 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCGAAAATCGTG
* * *
1015846 AAAAATAGAAAATGAGTCGTTTTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTG
510 AAAAATAGAAAATGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
1015911 AATTTACAAGCCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTACCTAAACCCACCTAC
574 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
1015976 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCACC
639 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTC-CCCG-CC-CC
* **
1016041 CGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-TTTCAGACTG
701 CGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-AGACCA
* * *
1016105 GACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGT
765 GACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGT
* *
1016170 GCATCCCGCCCC-TCTGGCCGGCTGAACGCCCGCACGCTCATTTTGTGAGTTGACTTAAGCATAC
830 GCATCCCGCCCCATCTGGCCGGCTGAACGCCCGCACACTCATTTCGTGAGTTGACTTAAGCATAC
1016234 AGAGTTCATTCCCAGTCTAA
895 AGAGTTCATTCCCAGTCTAA
1016254 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGATCGAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAATCTAAGATCAGATCG-AT
*
1016319 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCACATTTTTCTTCGTCGGGG
64 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
1016384 TAGCTCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
129 TAGCTCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
*
1016449 CGG-G-G-G-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATG
194 CGGTGTGCGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAT-
* *
1016510 AAACCTCGAGAATTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
258 AAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
1016575 ATTAAAGTGTTTGGAGTGGGGACACTTTTCTCAAATGGTCACTAAATCTTATACACTTCGAGTTT
322 ATTAAAGTGTTTGAAATGGGGACACTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
1016640 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTAGGAGCCA
386 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
1016705 AAACTCCTTCCCAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAAT
451 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCGAAAATCGTGAAAAAT
* * * * * *
1016770 ATAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATCAATTTGC
516 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
1016835 AAGCCATAAAAATGGCATTGGCACGCAGAAGTATGAAGATGTGCCCAAACACACCTACCACCCTA
581 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
1016900 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAGGGTA--G-T----G--CCCGCCCGCTCA
646 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCCCCGCCCCCGCCCGCTCG
* * * * * *
1016956 TTTTGTCGGTTGCCTTAAGCATACAGAGTTCATTCCCTGTCTAAGATTGGACCAGATCGAGGGTT
711 TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTT
** * *
1017021 GTGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGTTCGATCCCCAGCTTGTGCATCCCGCCC
776 GCAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCC
* * * * * **
1017086 CATCTGGCGGGTTGAGCGCCCGCACACTCATTTCGTGCGTTGACTTAGGCATATGGAGTTCATTC
841 CATCTGGCCGGCTGAACGCCCGCACACTCATTTCGTGAGTTGACTTAAGCATACAGAGTTCATTC
1017151 CCAGTCTAA
906 CCAGTCTAA
1017160 GCATACGGAGTTCATTCCCAAG-CTAAG-AT-C-G-G---------A-C------CAGA-C---C
1 GCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCAATCTAAGATCAGATCGATC
* * * ** *
1017200 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGTATGTGCTAGTGCCGTATTTTTCTTCG-C--AGT
65 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGT
* * *
1017262 -G-GCA-C----CATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCC
130 AGCTCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
1017320 AGGGGGTGTGCGCACATGATGTGTGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
195 ----GGTGTGCG---ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
* *
1017385 CTAACTAAACCTTAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
253 CTCA-TAAACCTGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
1017450 GTAGCTGA-TAAAGTGTTTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTT
316 GTAGC-CATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
1017514 CGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGGTT
379 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
1017579 GAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-TCACAAAAAGTTTCAAAAATCG
444 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACT-GCAAAAAGTTTCGAAAATCG
** *
1017643 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATTTGAAGGCTTAAGGGATCATTGTAT
508 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1017708 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
573 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
1017773 CCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGTCGGTGTAGTGCCCTCCCGCCTGC
638 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTC-CCCGCC--C
* * *
1017838 CCGCCCACTTGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
700 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
1017892 GGCATACGGA
Statistics
Matches: 1451, Mismatches: 152, Indels: 105
0.85 0.09 0.06
Matches are distributed among these distances:
870 51 0.04
874 3 0.00
875 3 0.00
876 2 0.00
877 3 0.00
879 1 0.00
880 54 0.04
881 427 0.29
882 6 0.00
883 1 0.00
884 1 0.00
885 4 0.00
889 1 0.00
891 1 0.00
892 1 0.00
893 47 0.03
902 1 0.00
903 1 0.00
904 1 0.00
905 125 0.09
906 89 0.06
907 2 0.00
909 1 0.00
914 1 0.00
915 1 0.00
917 149 0.10
918 291 0.20
922 1 0.00
923 1 0.00
924 1 0.00
925 4 0.00
926 7 0.00
927 47 0.03
928 122 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (914 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAATCTAAGATCAGATCGATCG
AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGTA
GCTCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GTGTGCGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATAAA
CCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTTTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCCCCGCCCCCGCCCGCTCGTTTTG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGC
AGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCATCT
GGCCGGCTGAACGCCCGCACACTCATTTCGTGAGTTGACTTAAGCATACAGAGTTCATTCCCAGT
CTAA
Found at i:1017902 original size:26 final size:26
Alignment explanation
Indices: 1017864--1017914 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1017854 TCGGTTGGCT
* *
1017864 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCAATCCCAGTC
1017890 TAGGCATACGGAGTTCAATCCCAGT
1 TAGGCATACGGAGTTCAATCCCAGT
1017915 GTAAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCAATCCCAGTC
Found at i:1018793 original size:26 final size:26
Alignment explanation
Indices: 1018757--1018806 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1018747 TTTGAATTGG
*
1018757 GCATACGGAGTTCATTCCCAATCTTA
1 GCATACAGAGTTCATTCCCAATCTTA
1018783 GCATACAGAGTTCATTCCCAATCT
1 GCATACAGAGTTCATTCCCAATCT
1018807 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTTA
Found at i:1019671 original size:26 final size:26
Alignment explanation
Indices: 1019632--1019682 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1019622 TGGATTGACT
*
1019632 TAGGCATACGGAGTTCATTCACAGTC
1 TAGGCATACAGAGTTCATTCACAGTC
*
1019658 TAGGCATACAGAGTTCATTCCCAGT
1 TAGGCATACAGAGTTCATTCACAGT
1019683 GTAAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCACAGTC
Found at i:1020551 original size:26 final size:26
Alignment explanation
Indices: 1020522--1020574 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1020512 TTTGAATTGG
*
1020522 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1020548 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1020574 G
1 G
1020575 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1021843 original size:891 final size:888
Alignment explanation
Indices: 1017866--1023732 Score: 7900
Period size: 858 Copynumber: 6.6 Consensus size: 888
1017856 GGTTGGCTTA
* * * * * * *
1017866 GGCATATGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCAATCCCAGTGTAAGATCAGACCGGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
** ** *
1017931 CCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCGGG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * * ** *
1017996 GCACCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGTGATC-AGGGGGCCGGGGGGGG
131 GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGG
*
1018060 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
194 TGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
1018125 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
259 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1018190 ATTAAAGTGTCTGAAATGGGGACACTCTGTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT
324 ATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
1018255 TTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGTTCATGTCTACCAAGTTTGGGGCCA
389 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * *
1018320 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAGAAAGTTTCAAAAAATCAAGAAAAA
454 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC-AAAAATCATGAAAAA
*
1018385 TAAAAAATGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
518 TAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
1018450 CAAGCCATAAAAGTGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
583 CAAGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
1018515 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGGCATAGTGCCCGCCCGCCCGCCCGCTC
648 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GACGTAGTGCCCGCCCGCCCGCCCGTTC
** *
1018579 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCGAACCAGACCGAGGGT
712 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* ** *
1018644 TGCGACAGTAGGATCGGCAGCGTGCAAAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCACC
777 TGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCACC
* *
1018709 CCACTGGCCGGCTGAGCGCTCACACACTCGTTTCGTAATTTGAATTG
842 CCACTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
* * * *
1018756 GGCATACGGAGTTCATTCCCAATCTTAGCATACAGAGTTCATTCCCAATCTAAGATCGGACTGCA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * * **
1018821 -CGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* *
1018885 GCACCATCG-CTGAGAACCTGACCGACGAAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
131 GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* * *
1018949 TGTGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATTAA
196 TGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
1019014 ACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCAA
261 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1019079 TAAAGTGTTTGAAATGGGGACACGT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
326 TAAAGTGTCTGAAATGGGGACAC-TCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
1019143 TAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
390 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * ** * * *
1019208 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACAGTAAAAGGTTTCAAAAATCATGAAAAATA
455 AAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * **
1019273 GAAAATGAGTTGTCTTGCCATGAAACTTCATTTGAAGGCTTAAGGGACCATTGTATGAATTTACA
520 AAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
1019338 AGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCGCCCTAT
585 AGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* **
1019403 CGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGT----GCCCTTCCG--C-TT-GTT
650 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTT
* * * *
1019460 TTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGC
715 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * ** * *
1019525 AGCAGTAGGATCGGCAGCAAGTAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCTCACCCCA
780 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCACCCCA
* * * * *
1019590 CTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGA-TTGACTTA
845 CTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGT-AATTTGAATTG
* * * * * *
1019634 GGCATACGGAGTTCATTCACAGTCTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * ** * *
1019699 CCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGCGATGCATTTTTCTTCGTCGAG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * * *
1019764 GCACTATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGGGGCCGGGGGGTG
131 GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* * *
1019828 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCTCTATCCCTCATCAA
196 TGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** * * * *
1019893 ACCTTAACAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCAT
261 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1019958 TAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTG-GTTTTT
326 TAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTT
* * *
1020022 TAGCTGAATTTTTTTGTCCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTTGGGCCAA
390 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
1020087 AAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
455 AAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
1020152 AAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
520 AAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
1020217 AGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
585 AGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
1020282 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTT
650 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTT
* * * *
1020347 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCAAGGGTTAC
715 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * *
1020412 GGCAGTAGGATCAGCAGCATGCAGAGGGGGACTCGGCCGATCCCTGGCTTACGCATCTCACGCCA
780 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCACCCCA
* * *
1020477 CTGGCCGGTTGAGCGCTCGCACGCTCGTTCCATAATTTGAATTG
845 CTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
*
1020521 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * * * ***
1020586 CTGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCATTTTTTTCTTTGTCGGG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC--T-TC---
* *
1020651 GTAAATCGCCGGGGCACCATCGTCGGAGAACCTGACCGACGGATTTGGGGTTCCGACGATCGGGG
125 ----AT---CGGGGCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGG
*
1020716 GGGCCGGGGGGTGTGCGCATATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
183 GGGCCGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
1020781 TATCCCTCATCAAACCGCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGC
248 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
1020846 TACCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTCTTTTCAAATGGTCTCAAAGTCTTGTAC
313 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTAC
* ** *
1020911 ACTTCGAGTTTTTAGCCGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATACCTACTAA
378 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
* * * *
1020976 GTTTGGCGCCAAAAATCATTCCGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTAAAAA
443 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
*
1021041 TCATGAAAAAGAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
508 TCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
1021106 TATGAATTTACAAGCCATAAAAATGCCATTGGCACGCTGAAATTTGAAGATGTGCCTAAACCCAC
573 TATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
1021171 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCC
638 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCG--C-CC
* * ** * *
1021236 GCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGTATATAGAGTTCATTCCTAGTCTAAGATCAGAC
700 GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
*
1021301 CAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTT
765 CAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTT
* * *
1021366 ACGCATCTCACCCCACTGGCCGGCTAAGTGCTCGCACGCTCGTTTCATAATTTGAATTG
830 ACGCATCTCACCCCACTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
* * * *
1021425 GGCATACGGAGTTCATTCCCAATCTAAGCACAAAGAGTTCATTCCCAATTTAAGATCAGACTGGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * * * * *
1021490 CGGAGGGTTGCGACAGCACATGCTGGGATCGGGCATGTGCTGGTGCCACATTTTTTTTCATTGGG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * * *
1021555 GCACCATCGCCGGAGAACCTGACCGACGGAATTAGGCTTCCGACGAT-AGGGGGTCCGGGGGGTT
131 GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-T
*
1021619 GTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCA
195 GTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * *
1021684 AACCGCGAGAACTCGCACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCA
260 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
1021749 TTAAAGTGTCTGAGATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTT
325 TTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
1021814 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCATGCCTACCAAGTTTGGCACCAA
390 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * *
1021879 AAATCATTCCGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATA
455 AAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
1021944 AAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
520 AAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
1022009 AGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTAT
585 AGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
** * ** * * ** *
1022074 CGATCCACGGCTTGTACATCCCGTCTCTCTAGTCGGTGTAGT----GCCCTCCCACCTATTTGTT
650 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTT
* * * * * *
1022135 TCGTCAGTTGGCTTACGAATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGC
715 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * ** * *
1022200 GACAGTAGGATCGGCAGCACACAGAGGGGGACTGGGTCGATACCCT-ACTTACGCATCTCACCCC
780 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCTGGCTTACGCATCTCACCCC
* * * *
1022264 ACTGGCCGACTGAGCGCTCGCACGCTTGTTTTGTAATTTGACTTG
844 ACTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
1022309 GGCATACGGAGTTCATTCCCAATCTAAG-AT-C---G----------------G---AG--CGGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * * *
1022348 TCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
66 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
** * * *
1022413 GCACCATCATCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTT
131 GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* *
1022478 TGCGAACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAA
196 TGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
1022543 A-CTGTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
261 ACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
1022607 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTT
325 TTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * **
1022672 TAGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAA
390 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * * * * *
1022737 AACT-CTATTCGAAAAAATTTTAAAAAATCCCAAACCACAAAAGGTTTCAAAAATCGTGAAAACT
455 AAATCCT-TCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
1022801 AGAAAACGAGCCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
519 AAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
1022866 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTA
584 AAGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
1022931 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCCGCTGC
649 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCC-GCCCG-T--
* *
1022996 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGATG
710 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* ** * * **** *** ** *
1023061 GTTACGGCAACAGGATCGGTAGCACGCAGAGGGTGACCTAATCGATCCCCAACTTGTGCATCCCA
775 GTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCA
* * * *** ** *
1023126 CCCCTA-TGGCCGGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
840 CCCC-ACTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
* * ** * *
1023175 GGCATACGGAGTTCAATCCCAGTCTAAGCATATGGAGTTCATTCCCAGA-CTAAGATCGGACCGA
1 GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCGG
* * * *
1023239 ACCAAGGGTTAC-AGCAGCACATGCTTGGCTCTGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
65 ACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG
* * * * *
1023303 AGGCACCATTACTGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTTCAACGATCGGGG
129 GGGCACCA-T-C----G---C-C-GGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGG
* * *
1023368 GGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCC
183 GGG-CCGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
1023433 CTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
247 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
1023498 TTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAA-GTTGTA
312 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTA
* *
1023562 CACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
377 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
* * * ** * **
1023627 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTGAAAAAATCCTGAATCGCAAAAAGTTTTGAAA
442 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
* * *** *
1023692 ATCGTAAAAAATTTGAAATGAGTCATCTTGCCATGAAACTT
507 ATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
1023733 GTGCCACGAC
Statistics
Matches: 4403, Mismatches: 483, Indels: 169
0.87 0.10 0.03
Matches are distributed among these distances:
857 2 0.00
858 551 0.13
859 13 0.00
860 2 0.00
862 7 0.00
863 3 0.00
864 1 0.00
865 3 0.00
866 164 0.04
867 3 0.00
871 1 0.00
878 210 0.05
879 536 0.12
880 35 0.01
882 7 0.00
883 8 0.00
884 188 0.04
885 6 0.00
886 177 0.04
887 546 0.12
888 32 0.01
889 73 0.02
890 70 0.02
891 519 0.12
892 64 0.01
893 1 0.00
894 3 0.00
897 1 0.00
900 45 0.01
901 483 0.11
902 3 0.00
903 192 0.04
904 452 0.10
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (888 bp):
GGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
GCACCATCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
TGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
AATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAA
AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCTCACCCCAC
TGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTAATTTGAATTG
Found at i:1023212 original size:26 final size:26
Alignment explanation
Indices: 1023176--1023228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1023166 GTTGGCTTAG
*
1023176 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGACTAA
* *
1023202 GCATATGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCAATCCCAGACTAA
1023228 G
1 G
1023229 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGACTAA
Found at i:1025779 original size:26 final size:26
Alignment explanation
Indices: 1025743--1025795 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1025733 GTTGACTTTG
*
1025743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1025769 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1025795 G
1 G
1025796 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1026177 original size:884 final size:887
Alignment explanation
Indices: 1023736--1029448 Score: 6797
Period size: 869 Copynumber: 6.4 Consensus size: 887
1023726 GAAACTTGTG
* * ** * * *
1023736 CCACGACTTGTGCATCCCGTCTCTCTGGCCAACATTGTGCCTGTCGGCCCGCTCGCCCGCTCGTT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC---C-GCCCGCCCGCCCGCTCGTT
* * * ** * *
1023801 TCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCTAGTCTAAGATTGGAGCAGA-TCGAGGGTTG
62 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTA
* * * * * * * *
1023865 CGGCAGTAAGATCGATAGCAGGTAGTGAGGGACCCGACCGATCCCAAGCT-TGCGCATCTCGCCC
126 CGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CC--CCGA-CCC--G-TAT--GCA-CCCGCCC
* * * * *
1023929 CTCTGGCTGGCTGAGTGCCCGTACGCTCGTTTCAG-GGGTTGACTTAGGCATACGAAGTTCATTC
181 CTCTGGCCGGCTGAGCG-CCGCACGCTCATTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ** * *
1023993 CCAGTCCAAGCACACGAAGTTCATTCTTAGTCTAAGATTGGA-CGAGACCGAGGGTTACGACAGC
244 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-GACAGAGGGTTACGACAGC
* * * * * * *
1024057 ACATGCTTGGCTCGGGCTTGTTCTGGTGCCACATTTTTCTCCGACGGGGCACCATCGTCGGTGCA
308 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
** * *
1024122 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGTGTGGCTGGAGGGGGTGTGCG
373 TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGC-CG-GGGGGTGTGCG
*
1024187 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCT
435 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1024252 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
500 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
1024317 GTGTCTAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCT
565 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
1024382 GAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGAC-AAAAAC
630 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAAC
* * * * *
1024445 TCCTTCTGGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
695 T--TTC-GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAA
*
1024510 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGC
757 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
1024575 CATAAAAATGGCAATGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
822 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
1024640 T
887 T
* * * *
1024641 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCCCACCTGCCCGCTCGTTTCAT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * * * *
1024706 TGATTGGCTCAGCCGTATGGAGTTCATTCACAGTCTAAGATCAGACCAGACTAATGGTTACGGTA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
* * * *
1024771 GCAGGATC-AGTAGCACGCAGAGGGGGA-CCC-AACCG-AT-C-CTCGCCTCTCTGGCCGGCTGA
131 GCAGGATCGA-CAGCACGCAGAGGGGGACCCCGACCCGTATGCACCCGCCCCTCTGGCCGGCTGA
* **
1024830 GCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
195 GCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** * *
1024895 GAGTTCATTCCTAGCCTAAGATCAGACTAGACCGAGGGTTACGAAAGCACATGCTGGGCTCGGGC
260 GAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGC
** * * * ** * *
1024960 ATGTGCTATTGCAGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCATCGGAGAACGTGAC
325 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * ** * *
1025025 CGACGGCATTGGGGATCCGGCGATTAGGGGGCCGGGGGGTGTGCGAACATGATGTACGATGGGTG
390 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * *
1025090 CTGGCACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTGACACCACCTTA
455 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
1025155 AACAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATT
520 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
1025220 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
585 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
1025285 AAAAAAATACAAGGATCACATCTACCTAGTTTAGGGCCAAAAAACTTTCTGAAAAATTTTTAAAA
650 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACTTTC-GAAAAAATTTTAAAA
* * * *
1025350 AATCCCGAACCGCAAAAAGTTTCGACAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
714 AATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
1025415 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTATAGGCCATAAAAATGGCATTGGCACGT
779 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
**
1025480 AGAAATATGAAGATGTGCCTAATTCCACCTACCA-CCTATCGAT
844 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
1025523 CCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCGTCCGCTCATTTCGT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * *
1025588 CGGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTATGGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
*
1025653 CCAGGATCGACAGCACGCAG-GGGGGA-CCCGA-CCG-AT-C-CCCGCCCCTCTGGCCGGCTGAG
131 GCAGGATCGACAGCACGCAGAGGGGGACCCCGACCCGTATGCACCCGCCCCTCTGGCCGGCTGAG
* * * *
1025712 CGCCGCACGTTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
196 CGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * * * *
1025777 AGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCGAAAGCACATGCTGGGCTAGGGCA
261 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCA
* *
1025842 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACC
326 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * ** *
1025907 GACGGCATCGGGGTTTCGGTGAACGAGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
391 GACGGCATTGGGGTTCCGACGATCG-GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
1025972 TGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTTACACCCCCT
453 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
1026037 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAATGTCTAAAATGGGGACA
518 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * * **
1026102 TTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCACAC
583 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
1026167 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAA
648 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-AACTTTCGAAAAAATTTTAA
* * *
1026232 AAAATCCTAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
712 AAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
1026297 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCAAAAAAATGGCATTGGCAC
777 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
1026362 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
842 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
1026408 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * ** *
1026473 TGGTCGGCTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
* * * *
1026538 GAAGGATCGATAGCA--CAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCCACCCCTCTGG
131 GCAGGATCGACAGCACGCAGAGGGGGACC---CCGA--CCC-G--TATGCA-CCCGCCCCTCTGG
* * *
1026601 CCGGCTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCT
187 CCGGCTGAGC-GCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** *
1026666 AAG-AT-C-G-G---------A--C-----T-GG-CC---C-GAGGGTTGTGGCAGCACATGCTG
251 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCACATGCTG
* * * * * * * * * *
1026705 GGCCCAGGCATGTG-TTGTGCCACTTTTTTCTTCGTCGGGGTACCATTGTCAGAGCATCGCCAGA
316 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * * *
1026769 GAACCTGATCGGCGGCATTGGGGTTTCGACGATCGGAGGGG-CAGGGGGTGTGCGCATATGATTT
381 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGT
* *
1026833 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCAAGAACTCA
445 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
1026898 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTTTGAAA
510 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
1026963 TGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
575 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
1027028 ATGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
640 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-AACTTTCGAAAA
* * ** *
1027093 AATTTAAAAAAATCCTAAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
704 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1027158 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
769 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1027223 ATTGGCACACAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
834 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
1027277 CCACGGCTTGCGCATCCCATCTTTTTGGCCGGTGTAGTGCCAGCCCGCCTGTCCGCTCGCTCGCT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C---CCG--C-C-CGCT
* * *
1027342 CGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAATTGAGG
58 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGG
* * * * * * *
1027406 GTTCCGACAGCAAGATCGATAGCATGCAGAGGGGGCCCCGGCCGATCCCCGTTTTGCACATCCCG
122 GTTACGGCAGCAGGATCGACAGCACGCAGAGGGGG-ACC--CCGA--CCCG-TATG--CA-CCCG
* * *
1027471 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCAT
178 CCCCTCTGGCCGGCTGAGCGCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1027536 TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGATC-GAGGGTTACGGCA
242 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTACGACA
* ** * ** ** *
1027600 GCACATGCTAGGCTCGAACATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGAAG
306 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
** * ** ** * **
1027665 CATCGTCGGAGAACCTGACCGACAGCATTTAGGTTCCGGTGATCGGGGTTGCCGGGGGGTGTATG
371 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCG
* * * *
1027730 CACATAATGTACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
435 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * * *
1027795 CGAGAACTCACACCCCCGTGAAGAGCATTTGAGATTGTACAGGTTTCCTGCTAGTAGCCATTAAA
500 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
1027860 GTATCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
565 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
**
1027925 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTC
630 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-AA
* * * * * * *
1027990 CATCCGAAGAAATTTTAAAAATTCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
694 CTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAA
* *
1028055 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTAGAAGCCA
759 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
1028119 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
824 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
1028183 CCACGGCTTGCGCATCCCGTCTCTCTGGCGGGTGTAGT----GCCCGCCTGCCCGCTCATTTTGT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * *
1028244 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTACAGC
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTAC-G-
* * * * *
1028308 AGTACGCAGGATCGGCAGCATGCAAAGGGTGACACGGCCGATCCCCGGCT-TGCGTATCCCGCCC
128 -GCA-GCAGGATCGACAGCACGCAGAGGGGGAC-C--CCGA--CCC-G-TATGC--A-CCCGCCC
*
1028372 CTCTGGCCGGCTGAGCGCC-CACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCC
181 CTCTGGCCGGCTGAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
1028436 AGTTTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGACAGCACA
246 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCACA
* * * * *
1028501 TGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTTGTCGGGGCAGCATCG-CGGGAGCATC
311 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC
* * * * * *
1028565 ACCGGAGAACCTGACCGACGACATTGAGGTTTCGATGATCGGGGGGCCGGGGGGTGTCCACACAT
375 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
* *
1028630 GATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAA
440 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1028695 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
505 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* **
1028759 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATT
570 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** * *
1028824 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT---AAGTTTGGGGCCAATACTCCTTCC
635 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACTTTCG
* * *
1028886 AAAAAAATTT-AAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
700 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
* *
1028950 GTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
765 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1029015 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
830 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
1029073 CCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGGCCCCCCGTCCACT
1 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-G---CCCG----CT
* ** *
1029138 CGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGACGG
58 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * *
1029203 TTGCGGCAGTAGGATCTACAGCACGCAGAGGGTGACCCGGTCGATCCCCG-ACTTGCGCATCTCG
123 TTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC---CGA--CCCGTA--T--GCA-CCCG
* * * **
1029267 CCCCTCTGACCGGCTGAGCGCCTGCACACCCATTTCGTCTGTTGACTTAGGCATACGGAGTTCAT
178 CCCCTCTGGCCGGCTGAGCGCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * **
1029332 TCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGTTTACGGTAG
242 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAG
* * *
1029397 CACATGTTGGACTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
307 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
1029449 GGATCGGCAG
Statistics
Matches: 4186, Mismatches: 513, Indels: 223
0.85 0.10 0.05
Matches are distributed among these distances:
869 482 0.12
870 1 0.00
871 2 0.00
872 75 0.02
873 34 0.01
874 1 0.00
875 1 0.00
876 2 0.00
877 81 0.02
878 4 0.00
879 95 0.02
880 4 0.00
881 227 0.05
882 141 0.03
883 412 0.10
884 418 0.10
885 150 0.04
886 182 0.04
887 20 0.00
888 4 0.00
889 82 0.02
890 132 0.03
891 17 0.00
892 3 0.00
893 1 0.00
894 223 0.05
895 93 0.02
896 190 0.05
897 7 0.00
898 151 0.04
899 57 0.01
900 148 0.04
901 91 0.02
902 68 0.02
903 1 0.00
905 66 0.02
906 181 0.04
907 339 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
GCAGGATCGACAGCACGCAGAGGGGGACCCCGACCCGTATGCACCCGCCCCTCTGGCCGGCTGAG
CGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACTTTCGAAAAAATTTTAAAAAA
TCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
Found at i:1027558 original size:26 final size:26
Alignment explanation
Indices: 1027522--1027573 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1027512 TTGACTTAGA
1027522 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
* *
1027548 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
1027574 ATCCGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:1028469 original size:26 final size:26
Alignment explanation
Indices: 1028417--1028469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1028407 GTTGACTTAG
* *
1028417 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1028443 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1028469 G
1 G
1028470 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1028826 original size:894 final size:893
Alignment explanation
Indices: 1026642--1029448 Score: 3771
Period size: 907 Copynumber: 3.1 Consensus size: 893
1026632 GTTGACTTAG
* * * * **
1026642 GCATACGGAGTTCATTCCCACTCTAAGATCGGACTGGCCCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
1026707 C-CCAGGCATGTG-TTGTGCCACTTTTTTCTTCGTCGGGGTACCATTGTCAGAGCATCGCCAGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAG
* * * * * * * * *
1026770 AACCTGATCGGCGGCATTGGGGTTTCGACGATCGGAGGGG-CAGGGGGTGTGCGCATATGATTTG
129 AACCTGACCGACGACATTGAGGTTTCGATGATCGG-GGGGCCGGGGGGTGTACGCACATGATGTG
*
1026834 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTC-AAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA-AACTCA
* *
1026898 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1026963 TGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1027028 ATGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
1027093 AATTTAAAAAAATCCTAAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTT-TAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1027158 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
** * *
1027223 ATTGGCACACAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1027288 GCATCCCATCTTTTTGGCCGGTGTAGTGCCAGCCCGCCTGTCCGCTCGCTCGCTCGTTTTGTCGG
646 GCATCCCGTCTCTCTGGCCGGTGTAGT----GCCCGCC--T--G--C-C-CGCTCATTTTGTCGG
* * *
1027353 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTC-C-G-ACA
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTCGCAGTAC-
* * * * ** *
1027415 GCAAGATCGATAGCATGCAGAGGGGGCCCCGGCCGATCCCCGTTTTGCACATCCCGCCCCTCTGG
763 GCAGGATCGACAGCATGCAGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
* * * * *
1027480 CCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAATCT
828 CCGGCTGAGCGCC-GCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1027545 AA
892 AA
* * * *
1027547 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGATC-GAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA-CAGAGGGTTACGGCAGCACATGCTGG
* * * ** * * *
1027611 GCTCGAACATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGAAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCGGAG
* * * * * *
1027676 AACCTGACCGAC-AGCATTTAGGTTCCGGTGATCGGGGTTGCCGGGGGGTGTATGCACATAATGT
129 AACCTGACCGACGA-CATTGAGGTTTCGATGATCGGGG-GGCCGGGGGGTGTACGCACATGATGT
* * * *
1027740 ACGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCA
* * * * * * *
1027805 CACCCCCGTGAAGAGCATTTGAGATTGTACAGGTTTCCTGCTAGTAGCCATTAAAGTATCTAAAA
257 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1027870 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1027935 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCATCCGAAGA
387 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
1028000 AATTTTAAAAATTCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAA-TCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
1028065 TGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTAGAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
1028129 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1028194 GCATCCCGTCTCTCTGGCGGGTGTAGTGCCCGCCTGCCCGCTCATTTTGTCGATTGGCTTAGGCA
646 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCA
* *
1028259 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACAGCAGTACGCAGGATCGGC
711 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTT-C-GCAGTACGCAGGATCGAC
* * * *
1028324 AGCATGCAAAGGGTGACACGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCG
774 AGCATGCAGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
1028389 CC-CACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
839 CCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1028443 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
1028508 CTTGAGCATGTGCTAGTGCCGCATTTTTCTTTGTCGGGGCAGCATCGCGGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAGA
* *
1028573 ACCTGACCGACGACATTGAGGTTTCGATGATCGGGGGGCCGGGGGGTGTCCACACATGATGTGCG
130 ACCTGACCGACGACATTGAGGTTTCGATGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGCG
*
1028638 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAC
*
1028702 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
**
1028767 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1028832 CATGCCAACAAAAATACAAGGATCATGTCT---AAGTTTGGGGCCAATACTCCTTCC-AAAAAAA
390 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
1028893 TTTAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTTAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
1028958 ATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
*
1029023 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** *
1029088 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGGCCCCCCGTCCACTCGTTTCGTCGGTTGG
650 CCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCC-G-----C-T-CA-T--TTT-GTCGGTTGG
* * * * * *
1029153 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACTGACGGTT-GCGGCA-GTAG
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACTGAGGGTTCGCAGTACGCAG
* * * * *
1029215 GATCTACAGCACGCAGAGGGTGACCCGGTCGATCCCCGACTTGCGCATCTCGCCCCTCTGACCGG
767 GATCGACAGCATGCAGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1029280 CTGAGCGCCTGCACACCCATTTCGTCTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 CTGAGCGCC-GCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1029343 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGTTTACGGTAGCACATGTTGGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
*
1029408 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
1029449 GGATCGGCAG
Statistics
Matches: 1674, Mismatches: 195, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
889 77 0.05
890 145 0.09
891 22 0.01
894 214 0.13
895 87 0.05
896 187 0.11
897 3 0.00
898 138 0.08
899 7 0.00
900 145 0.09
901 4 0.00
902 61 0.04
905 63 0.04
906 188 0.11
907 332 0.20
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAA
CCTGACCGACGACATTGAGGTTTCGATGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACC
CCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTCGCAGTACGCAGGATCGACAGCATGC
AGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACG
CTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1029353 original size:26 final size:26
Alignment explanation
Indices: 1029317--1029369 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1029307 GTTGACTTAG
*
1029317 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1029343 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1029369 G
1 G
1029370 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1029581 original size:26 final size:26
Alignment explanation
Indices: 1029552--1029604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1029542 GTTGACTTAG
1029552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1029578 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1029604 G
1 G
1029605 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1031935 original size:900 final size:893
Alignment explanation
Indices: 1029446--1032106 Score: 3656
Period size: 890 Copynumber: 3.0 Consensus size: 893
1029436 CTTCGTCGGG
* * * * * *
1029446 GCAGGATCGGCAGCACGCAAAGGGTGACCCAACCGATCGTTGGCTTGTGCATCCTGCCCCTCTAG
1 GCAGGATCAGCAGCACGCAAAGGGTGACCCGACCGATCCTCGGCTT-AGCATCCTGCCCCTCTGG
* *
1029511 CCGGCTGAGCGCCCGCATGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
65 CCGGCTGAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTT-TTTCCCAGTCT
** *
1029576 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAAAGGTTTACGGCAGCACATGCTG
129 AAGCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGTTTACGACAGCACATGCTG
* * *
1029641 GACTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGT-GGCACCATCACGAGAGCATCACCGG
193 G-CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-TAGGCACCATCACG-GAGCATCGCCGG
* * *
1029705 AGAACCTGACCGACGGCATTAAGGTTTTGGCGATC--GGGGGGCTGGGGGGTGTGCGCACATGAT
255 AGAACCTGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGGGCGGGGGGGTGTGCGCACATGAT
*
1029768 GTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
320 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** *
1029833 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTATAGCGTCTGA
385 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-A-AGTCTGA
**
1029898 AATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAAATGAATTTTT
448 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1029962 TTAG-GCATGCCAACAAAAATACAAGGCTCACGT-T--TAAGTTTGGGGCCAAAACTCCTTTCGA
513 TT-GTGCATGCCAA-AAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCC-TTCGA
* * *
1030023 AAAAATTTTAAAAAACTTCGAACCGAAAAAAGTTTCGAAAATCGTGAAAAATAGAGAACGAGTCG
575 AAAAATTTTAAAAAAC-TCGAACCG-CAAAAGTTTCGAAAATCGTGAAAAATAGAAAACCAGTCG
1030088 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAAT
638 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAAT
1030153 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
703 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1030218 TGTGCATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGT--------CTGCTCGTTTCGTCAGT
768 TGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGT
** * **
1030275 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCA
833 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCA
* * * * *
1030336 GCAGGATCAGCAGCATGCAGAGGGTGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGG
1 GCAGGATCAGCAGCACGCAAAGGGTGACCCGACCGATCCTCGGCTTA-GCATCCTGCCCCTCTGG
* * * *
1030401 TCGACTGAGCGCCCGTACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCT
65 CCGGCTGAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTT-TTCCCAGTCT
*
1030466 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CAGAGGTTTACGATAGCACATGCT
129 AAGCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGATC-GAGGTTTACGACAGCACATGCT
* * * *
1030530 GGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAAGGCACCATCGCGGGAGCATCGCCGG
192 -GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTAGGCACCATCAC-GGAGCATCGCCGG
* *
1030595 AGAACTTGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGGCCGGGGGGGGGTGTGCGCACATG
255 AGAACCTGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGG--GCGGGGGGGTGTGCGCACATG
* *
1030660 ATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
318 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
1030725 CTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT
383 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAA-GTCT
*
1030790 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTT
446 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * *
1030855 TTTTGTGCATGCCAAAAAAAATATGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTG
511 TTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTC-G
** * *
1030920 AAAAAATTTTAAAAAATCTCGAACAACAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGCA-T
574 AAAAAATTTTAAAAAA-CTCGAACCGC-AAAAGTTTCGAAAATCGTGAAAAATAGAAAAC-CAGT
* * *
1030984 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACATGCCATAAAA
636 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAA
* * * *
1031049 ATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACAACCCTATCGATCCACGA
701 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** *
1031114 CTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCG
766 CTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCG
* * * * *
1031179 GTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGGTCAGACTGGACCGAGGGTTACGGTA
831 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCA
* * *
1031242 GCAGTAT-TGACAGCACGTAAAGAGG-GACCCGACCGATCCTCGGCTTAGCATCCTGCCCCTCTG
1 GCAGGATCAG-CAGCACGCAAAG-GGTGACCCGACCGATCCTCGGCTTAGCATCCTGCCCCTCTG
* * * * * * *
1031305 GCCGGCTGAGCGCTCGCACGCTCGTTCCGTGGGTTGACTTAGGTATACGGAGTTGTTTCCTAGTG
64 GCCGGCTGAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTT-TTTCCCAGTC
* ** *
1031370 TAAGCATATGGAATTCATTCCCAGTCTAAGATCGCACTGGATCGAGGGTTACGACAGCACATGCT
128 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCG-ACCAGATCGAGGTTTACGACAGCACATGCT
* * *
1031435 AGGCTCAGGCATGTGCTGCTACCGCATTTTTCTTCGTCTAGGCACCATC-CTGGAGCATCGTCGG
192 -GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTAGGCACCATCAC-GGAGCATCGCCGG
* * * * * *
1031499 AGAACCTGACCGGCGGCGTTGGGGTTCCGACGATCGGGGGGGGCGGGGGGGTGTGCGCCCATGAT
255 AGAACCTGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGGGCGGGGGGGTGTGCGCACATGAT
* *
1031564 GTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
320 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
1031629 CACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAATGAA
385 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-CTGAA
* *
1031694 ATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATTGTTT
449 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
1031758 TGTGCATGCCAAAAAATATACAAGGATCACGTCTACAAACTTTGGGGTGAAAACTCCTTCCAAAA
514 TGTGCATGCCAAAAAA-ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCGAAAA
* * * **
1031823 ATATTTTTAAGAAAACCCGAACCGCAAAAGTTTCGCAAATCATGAAAAATAGAAAATTAGTCGTC
578 A-A-TTTTAA-AAAACTCGAACCGCAAAAGTTTCGAAAATCGTGAAAAATAGAAAACCAGTCGTC
*
1031888 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGG
640 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGG
* * *
1031953 CATTGGCATGCAGAAATATAAAGATGTGCCTACACCCACCTACCACCCTATCGATCCATGGCTTG
705 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
1032018 TGCA-CCCGTCTCTCTGGCCGGCGTAGT----G--C--CCGCCCGCCCGCTTGTTTCGTCGGTTG
770 TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTG
1032074 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
835 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1032107 CATATCGAGT
Statistics
Matches: 1567, Mismatches: 163, Indels: 81
0.87 0.09 0.04
Matches are distributed among these distances:
890 253 0.16
891 61 0.04
892 5 0.00
893 1 0.00
894 170 0.11
895 60 0.04
896 3 0.00
897 3 0.00
898 233 0.15
899 36 0.02
900 218 0.14
901 65 0.04
902 138 0.09
904 50 0.03
905 167 0.11
906 102 0.07
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCAGGATCAGCAGCACGCAAAGGGTGACCCGACCGATCCTCGGCTTAGCATCCTGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTTTTCCCAGTCTAA
GCATATGGAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGTTTACGACAGCACATGCTGGCT
CAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTAGGCACCATCACGGAGCATCGCCGGAGAACC
TGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAA
AAAACTCGAACCGCAAAAGTTTCGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCA
Found at i:1033017 original size:26 final size:26
Alignment explanation
Indices: 1032981--1033033 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1032971 GTTGACTTAG
1032981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1033007 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1033033 G
1 G
1033034 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1033911 original size:26 final size:26
Alignment explanation
Indices: 1033872--1033923 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1033862 TGGGTTGACT
*
1033872 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1033898 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1033924 AAAGATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:1033952 original size:894 final size:892
Alignment explanation
Indices: 1032048--1034266 Score: 3090
Period size: 894 Copynumber: 2.5 Consensus size: 892
1032038 GCGTAGTGCC
* * *
1032048 CGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATC
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-C
* * * ***
1032113 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGTTTATGGCAGCACATGCTAGACTCAAG
65 GAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGTTTACGACAGCACATGCTAGGCTTGGG
* * * * * * * *
1032177 CATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCACGGGAGCATCGCCAGAAAACCTGA
129 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCTGGAGCATCGTCGGAGAACCTGA
* *
1032242 CCGGCAGCATTGAGGTTTCGGCGATC-AGAGGGGCCGGGGGGTGTGCGTACATGATGTGG-GATG
194 CCGGCGGCATTGAGGTTTCGGCGATCGAG-GGGGCCGGGGGGTGTGCGCACATGATG-GGCGATG
*
1032305 GGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCACGAACTCACACCCC
257 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACACCCC
* *
1032370 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATAAAAGTGTCTGAAATGGGGA
321 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1032435 CACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCAAGTTTTTAAATGAATTTTTTTGTGCAT
386 CACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCAAGTTTTTAAATGAATTTTTTTATGCAC
* * * * *
1032500 GCCAACAAAAATACAAGGATCACGTCTAAGTTGGGGCCCAAAACTCCTTTCGAAAAAATTTTAAA
451 ACCAACAAAAATACAAGAATCACGTCTAAGTTGGGGCACAAAAATCCTTTCAAAAAAATTTTAAA
* * *
1032565 AAACCCCGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAA
516 AAACCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAA
* *
1032630 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTAGAAGCCATAAAAATGGCATTGGCAT
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCAC
* *
1032695 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
646 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCG
* * * *
1032760 TCTCTCTAGTCGGCATAGTGCCCACACGCCCGCCCGCCCGTTCGTTTCGTCTGTTGGCTTAGGCA
711 TCTCTCTAGCCGACATAGT-------CGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCA
* ** * * *
1032825 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCAGCAGCAGGATCGGTAGCA
769 TACGAAGTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTACAGCAGCAGGATCGGCAACA
* * * * * *
1032890 CGCAGAGGGTGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCTGGTTGAG
834 CACAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTTAGGCTGGCTGAG
* * * * *
1032949 TGCCTGCACGCTCATTTCGTCAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-C
* *
1033014 GAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGTTTACGACAGCACATGCTGGGCTTGGGC
65 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGTTTACGACAGCACATGCTAGGCTTGGGC
1033079 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCTGGAGCATCGTCGGAGAACCTGAC
130 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCTGGAGCATCGTCGGAGAACCTGAC
* *
1033144 CGGCGGCATTAAGGTTTCGGCGATCGAGGGGGCCGGGGGATGTGCGCACATGATGGGCGATGGGT
195 CGGCGGCATTGAGGTTTCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGGGCGATGGGT
1033209 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTT
1033273 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * ** *
1033338 TTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCACATC
389 TTTTTTCAAATGGTCACAAAATCTTGCACACTTCAAGTTTTTAAATGAATTTTTTTATGCACACC
* *
1033403 AACAAAAATGCAAGAATGACGTCTACAAAGTTTGGGG-ACAAAAATCCTTTCAAAAAAATTTTAA
454 AACAAAAATACAAGAATCACGTCT---AAG-TTGGGGCACAAAAATCCTTTCAAAAAAATTTTAA
* * * **
1033467 AAAATCCCAAACCGTAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATT-
515 AAAACCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTA
* * *
1033531 AAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCA
580 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCA
* *
1033596 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCC
645 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCC
* * *
1033661 GTCTCTCTGGCCGACGTAGT-GCCCGCCCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGAA
710 GTCTCTCTAGCCGACATAGTCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGAA
* *
1033725 GTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTACGGCAGTAGGATCGGCAACACACAGA
775 GTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTACAGCAGCAGGATCGGCAACACACAGA
* *
1033790 GGGGGACCCGGCCAATCCCCGACTTGTGCATCCCGCCCCTCTAGTC-GGCTGAG
840 GGGGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCT-TAGGCTGGCTGAG
* * *
1033843 CGCCCGCGCGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-
* *
1033908 GAGTTCATTCCCAGTCAAAGATCAGACCGGATCGAGGGTTACGACAGCACATGCTAGGCTTGGGC
65 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGTTTACGACAGCACATGCTAGGCTTGGGC
* * * * * * *
1033973 ATGTTCTGGTGCCATATTTTTTTTTGTCGGGGCACCAT-CGTCGGAGCATCATTGGAGAACCTGA
130 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCT-GGAGCATCGTCGGAGAACCTGA
* * * * * * *
1034037 CCGACGGCATCGAGGTTCCGGCGATCG-GGGGGCGGGGGGGTATGCGCACATTATGTGCGATGGG
194 CCGGCGGCATTGAGGTTTCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGGGCGATGGG
1034101 TGCTGGTACTTGGCCCTTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
259 TGCTGGTACTTGGCCC------T------TATATTGGCCCCCTATCCCTCATCAAACCTC-AGAA
* *
1034166 CTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
311 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1034231 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
376 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
1034267 GTGAAAAATA
Statistics
Matches: 1175, Mismatches: 119, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
893 50 0.04
894 333 0.28
895 3 0.00
899 1 0.00
900 148 0.13
901 280 0.24
902 140 0.12
903 83 0.07
904 6 0.01
905 41 0.03
906 90 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGTTTACGACAGCACATGCTAGGCTTGGGCA
TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCTGGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGAGGTTTCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGGGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGCACACTTCAAGTTTTTAAATGAATTTTTTTATGCACACCAA
CAAAAATACAAGAATCACGTCTAAGTTGGGGCACAAAAATCCTTTCAAAAAAATTTTAAAAAACC
CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCT
CTAGCCGACATAGTCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATTGGACCAAACCAAGGGTTACAGCAGCAGGATCGGCAACACACAGAGGGGGA
CCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTTAGGCTGGCTGAG
Found at i:1034145 original size:13 final size:12
Alignment explanation
Indices: 1034110--1034141 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1034100 GTGCTGGTAC
*
1034110 TTGGCCCTTATA
1 TTGGCCCCTATA
1034122 TTGGCCCCTATA
1 TTGGCCCCTATA
1034134 TTGGCCCC
1 TTGGCCCC
1034142 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:1035587 original size:26 final size:26
Alignment explanation
Indices: 1035535--1035587 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1035525 GTTAACTTAG
* *
1035535 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1035561 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1035587 G
1 G
1035588 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1036870 original size:890 final size:892
Alignment explanation
Indices: 1034652--1041132 Score: 8042
Period size: 890 Copynumber: 7.2 Consensus size: 892
1034642 ACTTAGGCAT
* * * * *
1034652 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTAGCAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* * * ** ** * *
1034717 GACATGTGCTGGTGCCGCATTTTTCTTCGCCGGTGCACCATCATC-GAAGTGTCACAGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAG-AGCATCGCCGGAGAACC
* * *
1034781 TG-ACGGGCAGCATTGAGGTTCCGACGATCAGGAGGGCCGGGGGGGCTGTGCGTACATGATGTGC
130 TGAAC-GGCGGCATTGGGGTTCCGACGAT---------CGGGGGGG-TGTGCGCACATGATGTGC
*
1034845 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1034910 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1034975 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * **
1035040 GCATGCCAAAAAAAATATGAGGATCACGTCTACCAAGTTTGGGGCCAAAACGTCTTCCGAAAAAA
379 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAA
* ** * *
1035105 TTTTAAAAAATTTCT-AACAACAAAAAGTTTCGAAAATCATCAAAAATAGAAAACGAGTCGTCTT
444 TTTTAAAAAA-TCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* **
1035169 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGCGAATTTACAAGCCATAAAAATGGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1035234 TTGGCATGCAGAAATATGAAGATGTGCCTCAATCCACCTACAACCCTATCGATCCACGGCTTGTG
573 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1035299 CATCCAGTCTCTCTGGTCGGCATAGTGCCCACTCGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGT
638 CATCCCGTCTCTCTGGCCGGC---GT----AGT-GCCCGCCCGCCCG--C--CCGCTCGTTTCGT
* * * * * **
1035364 CGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGGT-TAGACCGGATC-GAGAGTTATGG
691 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCAGAGGGTTGCGG
* * * ** * * * * *
1035427 TAGTAGTATCGGTAGCATGCAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCGCCCTTCT
755 CAGCAGGATCGACAGCACGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT
* * * * * *
1035492 GGTCGACTGAGCGCTCGCACGCTCCTTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGT
820 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
1035557 GTAAGCAT
885 CTAAGCAC
* * * * * ** * * *
1035565 ATGGAGTTCATTCCCAATCTAAGATTGGACTGGATCGAGGGTTGCGGTAGTAAATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* * *
1035630 GGCATGTGCTGCTGCCACATTTTTCTTCG-TCGGGGCACCATC-CCAGAGCATCGTCGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCAGAGCATCGCCGGAGAACC
* *
1035693 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGA
130 TGAACGGCGGCATTGGGGTTCCGACGAT---------CGGGGGGGTGTGCGCACATGATGTGCGA
* * *
1035758 TGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCACACC
186 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1035823 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
251 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
1035888 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
316 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
1035953 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACTTTCCAAAAAAATT
381 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAATT
* * * ** * *
1036018 CTAAAAAATCTTGAGCCTCAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCC
446 TTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
1036083 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTG
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
1036148 GCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
576 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
1036213 CCCCTGTCTCTGGCCGGCGTAATGCCCGCTCGCCCGCCCACTCGTTTCATC-GTTGGCATAGGCA
641 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * **
1036277 TACGGAGTTAATTCCCAGTCTAAGATCGAACTGGA-CAGAGGGTTGTGGCAGCAATATCGACAGC
706 TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAGC
* * *
1036341 ACGTAGAGTGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
771 ACGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* ** *
1036406 GCACGCTCGTTTCATGGGTTGACTTAGGCATACATAGTTGATTCCCAGTCTAAGCAC
836 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* *
1036463 ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* *
1036528 GGCATGTGCTGGTGCTGCATTTTTGTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* *
1036593 -AACGGACGGCGTTGGGGTTCCGACGATCGGGGGGGTGTGCGGACATGATGTGC-ATTGGGTGCT
131 GAACGG-CGGCATTGGGGTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCT
* * *
1036656 GGTACTTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTCGAGAACTCGCACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1036721 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1036786 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCTTGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
1036851 AAAAACAAAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAATTTTAAAAAA
*
1036916 TCCCT-AACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
454 T-CCTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
1036979 CTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
1037044 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTG
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
1037109 TCTCTGGCCGGCGTAATGCCCGCTCGCCCGCCCACTCGTTTCATC-GTTGGCATAGGCATACGGA
647 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** *
1037173 GTTAATTCCCAGTCTAAGATCGAACTGGA-CAGAGGGTTGTGGCAGCAATATCGACAGCACGTAG
712 GTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* *
1037237 AGTGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
777 AGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* ** *
1037302 TCGTTTCATGGGTTGACTTAGGCATACATAGTTGATTCCCAGTCTAAGCAC
842 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* *
1037353 ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* *
1037418 GGCATGTGCTGGTGCTGCATTTTTGTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* * *
1037483 G-ACGGACGGCGTTGGGGTTCCGGCGATCGGGGGGGTGTGCGGACATGATGTGC-ATTGGGTGCT
131 GAACGG-CGGCATTGGGGTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCT
* * *
1037546 GGTACTTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1037611 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1037676 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCTTGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1037741 AAAAACAAAAGGATCACGTCTACCAAGTTTGGGCCCAAAA-ATCCTTCCGAAAAAATTTTAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACA-CCTTCCGAAAAAATTTTAAAAA
* * *
1037805 ATCCCT-AA-CTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
453 AT-CCTGAACCT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
1037868 ACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
1037933 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
1037998 CTCTCTAGTCGGCGTAGTGCCTGCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCTT
646 CTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
1038063 ACGGAGTTCATTCCTAGTGTAAGATTGGACCAGATC-GAGGGTTGCGGCAGTAGGATCGGCAGCA
707 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * ** *
1038127 CGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCACTCTGGCCGGCTGAATGCCGG
772 CGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
1038192 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT------
837 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* * *
1038242 A---AG---------A-T-T-AGA-C--A--GGACCGAGGGTTACGACAGCACATGCTGGGCTTG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* * * * *
1038287 GGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCACTGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCAGAGCATCGCCGGAGAACC
* * * * * *
1038351 TGACCCGCTGCATTGGGGTTCCGACGATCGGGGGTGCCAGGGGGTGC-CAACATGATGTGTGATT
130 TGAACGGCGGCATTGGGGTTCCGACGATC--GGG-G---GGGTGTGCGC-ACATGATGTGCGATG
* *
1038415 GGTTCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
188 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
1038480 CTGAAAGAGCATTTGAGATTTTACAGGATTGCTGCGAGTAGCCATTAAAGTGTATAAAATGGGGA
253 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1038545 CACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTT
318 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * * *
1038610 GCCGAA-AAAAATACAAGGATCACACCCACCAAGTTTGGGACCAAAA-ATCCTTCCTAAAAAATT
383 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACA-CCTTCCGAAAAAATT
* * * *
1038673 TTAAAAAATCCCGAACCACAAAAAGTTTAAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCC
446 TTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1038738 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATATACAAGCCATAAAAATGGCATTC
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
1038803 GCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
576 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
1038868 CTCGTCTCTCTAGTCTGCGTAGTGCCCGCCCACCCGCCCGCCTGCTAGTTTAGTCGGTTGGCTTA
641 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTA
* * * ** * * *
1038933 GGCTTATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATGA-AAGGTTGCGGCAGCAGGATTGG
702 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
1038997 CAGCACGCATAGT-GGTCACGGTCGATCCCCGACTTTCGCATCCCGTCCCTCTGGCCGACTGAGC
767 CAGCACGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
1039061 ACCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAAGCAT
832 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* *
1039122 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
* * ** * * **
1039187 GGCATGTGCTGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTTGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* * * ** * * *
1039252 GACCGGTGGCATTGGGGTTCTGGTGATTGGGGGGGCCGAGGGGTGTGCACACATGATGTACGATG
131 GAACGGCGGCATTGGGGTTCCGACGA-T----CGG--G-GGGGTGTGCGCACATGATGTGCGATG
*
1039317 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-CTAGCAAACCTCGAGAACTCACA-CC
188 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACACCC
* *
1039380 CCTTCAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGG
252 CCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1039445 GACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGC
316 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1039509 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAATAT
381 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAA-AT
* ** * **
1039573 TTTAAAAAATCCCGAACAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
445 TTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
1039638 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
510 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1039703 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACAGCTTGCGCA
575 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
1039768 TCCCATCTCTCTGGCCGGCGTAGTGCCCGATCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
640 TCCCGTCTCTCTGGCCGGCGTAGTG-CC---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
1039833 AGGCATGCAGAGCTCATT-CCAGTCTAAGATCGGACCAGACCA-AGGGTTGCGGTAGCAGGATTG
701 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCG
* * *
1039896 CCAGCACCCAGA----GA---G---G------GACTTGCGCATCCCGCCCTTCTGGCCGGCTGAG
766 ACAGCACGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
1039945 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCTT
831 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* * * * * * *
1040007 ACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCT-GTAGCATATGCTAGGCTC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-ATGGCAGCACATGCTGGGCTC
* * * * * * * *
1040071 GGGAATGTGCTGGTTCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACC
* * *
1040136 TGATCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCCGAAGGGGTGTGCGCACATGATGTGCGA
130 TGAACGGCGGCATTGGGGTTCCGACGATC----GG---G--GGGGTGTGCGCACATGATGTGCGA
* *
1040201 TGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
186 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1040266 CCCTTAAAGAGCATTTGAGATCTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
251 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1040331 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
316 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1040396 ATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTAGGG-CCAAAA-ATCCTCCCGAAAAAA
381 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCCAAAACA-CCTTCCGAAAAAA
* * * * *
1040459 TTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTTGTCTT
444 TTTTAAAAAATCCTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
1040523 GCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
1040588 TTGGCACACAGAAATATGAAGATGTGTCTAAACCTACCTACCACCCTATCGATGCACGGCTTGCA
573 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1040653 CATCCCGTCTCCCTGGCCGACATAGTGCCCGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
1040718 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCA-CGGGTTGCGGCAGCAGGATC-AG
703 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGA-
*
1040781 CAGCACGCAGACG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
767 CAGCACGCAGA-GTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
1040845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGC-C
831 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* * *
1040906 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG--ATGCGACAGCTCATGTTGGGC
1 -ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATG-G-CAGCACATGCTGGGC
* * * *
1040969 TCGCGCATGTGCTGGTGCCGTATTTTTCTTTG-TCGGGGCACCATCGCCAGAGCATCACCGGAGA
63 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * *
1041033 ACCTG-ACTGGCGGCATTAGGGTTACGAGGATCGGTGGGGTCGGGAGGTGCGCACAAATGATGTG
127 ACCTGAAC-GGCGGCATTGGGGTTCCGACGATC---GGGG--GGG-TGTGCGCAC--ATGATGTG
** *
1041097 CGATGGGTGCTGGTACTTGGAACTTAAATTGGCCCC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1041133 TTAAAGAGCA
Statistics
Matches: 4965, Mismatches: 476, Indels: 268
0.87 0.08 0.05
Matches are distributed among these distances:
868 1 0.00
869 106 0.02
870 2 0.00
871 22 0.00
872 3 0.00
873 2 0.00
874 99 0.02
875 528 0.11
876 5 0.00
877 1 0.00
880 1 0.00
883 48 0.01
884 52 0.01
885 222 0.04
886 202 0.04
887 253 0.05
888 11 0.00
889 3 0.00
890 1340 0.27
891 5 0.00
892 1 0.00
893 1 0.00
894 28 0.01
895 167 0.03
896 6 0.00
897 11 0.00
898 260 0.05
899 100 0.02
900 376 0.08
901 288 0.06
902 191 0.04
903 16 0.00
904 4 0.00
905 15 0.00
908 2 0.00
910 2 0.00
911 448 0.09
912 49 0.01
913 94 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
GAACGGCGGCATTGGGGTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAATTTTAAAAAATC
CTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGTG
GGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
Found at i:1039121 original size:26 final size:26
Alignment explanation
Indices: 1039092--1039144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1039082 GTTGACTTAG
* *
1039092 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1039118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1039144 G
1 G
1039145 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1040016 original size:26 final size:26
Alignment explanation
Indices: 1039980--1040029 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1039970 GACTTAGGCA
*
1039980 TACGGAGTTCATTCCCATTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
1040006 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1040030 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:1040929 original size:26 final size:26
Alignment explanation
Indices: 1040880--1040929 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1040870 GACTTAGGCA
*
1040880 TACGGAGTTCATTCCCAATTTAAGCC
1 TACGGAGTTCATTCCCAATCTAAGCC
*
1040906 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
1040930 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCC
Found at i:1043955 original size:714 final size:697
Alignment explanation
Indices: 1042598--1044059 Score: 2005
Period size: 714 Copynumber: 2.1 Consensus size: 697
1042588 TGGGTTGACC
* *
1042598 TAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT
* * * * * **
1042663 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACTTGGCC
66 AGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGAACAGGGCC
* *
1042728 GGCAGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGGTTGTGCGCACATAATGTGAGATGG
131 GACAGCATTGGGGTTCAGACGATCGGGGGGCCC-GGGGGGGTTGTGCGCACATAATGTGAGATGG
1042793 GTGCTGGTACTTGGCCCTCAATATTGGCCCCCTATCCCTCATCAAACCTCAGAAACTCACACCCC
195 GTGCTGGTACTTGGCCCTCAATATTGGCCCCCTATCCCTCATCAAACCTCAGAAACTCACACCCC
* * *
1042858 CTTAAAAGCTTTTGAGATTTTACAGTTTGTTGCAGTAGCCATTTAAAGTGTCTGGAATGTGGACA
260 CTTAAAAGCATTTGAGATTTTACAGTTTGCTGCAGTAGCCATTTAAAGTGTCTGAAATGTGGACA
* *
1042923 CTTTTTTCAAATGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTTGCACGC
325 CTTTTTTCAAATGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTGCAAGC
* *
1042988 CACAAAAATACAAGGATCACATCTACCAAGCATAGGCCAGAACTCGTTTCAAAAAATTTTTAAAA
390 CACAAAAATACAAGGATCACATCTACCAAGCATAGGCCAAAACTCCTTTCAAAAAATTTTTAAAA
** * ** * *
1043053 AATCTGGAACCGTAAAAGTTTTCAAAAATTGTGAAAATTGAAAATGAGTCGTCGTGACATGAACT
455 AATCCCGAACCGAAAAAGTTTTCAAAAATCATGAAAATAGAAAAGGAGTCGTCGTGACATGAACT
* * * *
1043118 TCACTGTGAAGGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
520 TCACTGTGAAGGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
1043183 AGAAATATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGGTCCACGGCTTGCGCATCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCCCATC
* **
1043248 TCTCTGGCCGACGTAGTGCCCGCTTGTCCGCCCGCTCATTTTGTCGGTTGGCT
650 ACTCTGGCCGACGTAGTGCCCGC----CCGCCCG-TCATTTCATCGGTTGGCT
*
1043301 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT
* * *
1043366 AGGCTCGAGCATGTGCTTGTGTCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAGG
66 AGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAG-A--ACAGG
*
1043431 AGAACCTGACTAACGACATTGGGGTTTCAG-CGATCGGGGGGGCC-GGGGGG-TGTGCGCACATA
128 -G--CC-GAC--A-G-CATTGGGG-TTCAGACGATCGGGGGGCCCGGGGGGGTTGTGCGCACATA
* * *
1043493 ATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCT-TGAG
184 ATGTGAGATGGGTGCTGGTACTTGGCCCTCAATATTGGCCCCCTATCCCTCATCAAACCTCAGA-
1043556 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTG
248 AACTCACACCCCCTTAAA-AGCATTTGAGATTTTACA-GTTTGCTG-CAGTAGCCATTTAAAGTG
1043620 TCTGAAATAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
310 TCTGAAAT-GTGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * **
1043684 ATTTTTTTG-TGCAAGCCAAGAAAAATACAAGGATCATGTCTGCCAAGTTTTAGGCCAAAACTCC
373 ATTTTTTTGTTGCAAGCC-ACAAAAATACAAGGATCACATCTACCAAG-CATAGGCCAAAACTCC
1043748 TTTCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAA
436 TTTC-AAAAAATTTTTAAAAAATCCCGAACCG-AAAAAGTTTTCAAAAATCATG-AAAATAGAAA
* *
1043811 AGGAGTCGTCTTGCCATGAAACTTCAC-GTGAA-GGCTTAAGGGACAATTGTATCAATTTACAAG
498 AGGAGTCGTCGTGACATG-AACTTCACTGTGAAGGGCTTAAGGGACAATTGTATCAATTTACAAG
*
1043874 CCATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-G
562 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * ** **
1043938 GATCCATGGCTTGCGCATCCTATCACTCTGGCCGGGGTAGTGCCCGCCCGCCCGTTGTTTCATCG
627 G-TCCACGGCTTGCGCATCCCATCACTCTGGCCGACGTAGTGCCCGCCCGCCCGTCATTTCATCG
1044003 GTTGGCT
691 GTTGGCT
* * *
1044010 TAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGACCAGACTGAGGGTT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
1044060 GTGGTAGCAG
Statistics
Matches: 672, Mismatches: 62, Indels: 44
0.86 0.08 0.06
Matches are distributed among these distances:
703 111 0.17
704 1 0.00
706 2 0.00
707 1 0.00
709 64 0.10
710 56 0.08
711 57 0.08
712 53 0.08
713 82 0.12
714 193 0.29
715 44 0.07
716 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (697 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT
AGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGAACAGGGCC
GACAGCATTGGGGTTCAGACGATCGGGGGGCCCGGGGGGGTTGTGCGCACATAATGTGAGATGGG
TGCTGGTACTTGGCCCTCAATATTGGCCCCCTATCCCTCATCAAACCTCAGAAACTCACACCCCC
TTAAAAGCATTTGAGATTTTACAGTTTGCTGCAGTAGCCATTTAAAGTGTCTGAAATGTGGACAC
TTTTTTCAAATGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTGCAAGCC
ACAAAAATACAAGGATCACATCTACCAAGCATAGGCCAAAACTCCTTTCAAAAAATTTTTAAAAA
ATCCCGAACCGAAAAAGTTTTCAAAAATCATGAAAATAGAAAAGGAGTCGTCGTGACATGAACTT
CACTGTGAAGGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCCCATCA
CTCTGGCCGACGTAGTGCCCGCCCGCCCGTCATTTCATCGGTTGGCT
Found at i:1044208 original size:26 final size:26
Alignment explanation
Indices: 1044172--1044224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1044162 GTTGACTTAG
*
1044172 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1044198 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1044224 G
1 G
1044225 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1044898 original size:26 final size:26
Alignment explanation
Indices: 1044869--1044918 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1044859 GACTTAGGCA
1044869 TACGGAGATCATTCCCAGTCTAAGCT
1 TACGGAGATCATTCCCAGTCTAAGCT
*
1044895 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGATCATTCCCAGTCTAAG
1044919 ATTGAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGATCATTCCCAGTCTAAGCT
Found at i:1045801 original size:26 final size:26
Alignment explanation
Indices: 1045765--1045817 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1045755 GTTGACTTAG
1045765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1045791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1045817 G
1 G
1045818 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1046409 original size:899 final size:898
Alignment explanation
Indices: 1044671--1047154 Score: 3826
Period size: 894 Copynumber: 2.8 Consensus size: 898
1044661 AAATCCCGCA
*
1044671 CGCCCGCCTGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCG-TTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * *
1044736 CAGACCGGATCGAGGGTTATGGCAGCAGGATTGGCATCACACAAAGG-GGAACCCGGCCGATCAC
65 CAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGG-ACCCGGCCGATCAA
* * * * * * *
1044800 CGGCTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTA
129 CGCCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
1044865 GGCATACGGAGATCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGG
194 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAG
* * * * * *
1044929 ACCGAGGGCTGCGGCAGCACATGCTAGGCTCAGGCATGGGCTGGTGCCACATTTTTCTTCGTCGG
258 ACCGTGGGATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGG
* * * * * *
1044994 GGCACCA-CTGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATTGAGG
323 GGCACCATC-GTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATCGGGG
* * * * * *
1045058 GGGCTAGGGGGGTGTGCACACATGACGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCAC
387 GGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
1045123 CTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
451 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
1045188 CTGCCAGTAGCCCTTAAAGTGTTTGAAATGGGGACACTTTTTACAAATGGTCAAAAAATCTTGTA
516 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
1045253 CACTTCGAGTTTTTAGCTAAATTTTTTTGTGCACA-CCAAAAAAAATAC-AGGATCACGTCTACC
581 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-AGCCAAAAAAAATACAAGGATCACGTCTACC
* *
1045316 AAG-TTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACATCAAGAAGCTTCAA
645 AAGTTTTA-GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACATCAAAAAGCTTCAA
* * * * *
1045380 AAATCGTGAAACATTGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
709 AAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAA
*
1045445 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
774 TTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
1045510 CACCTATCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCC
839 CACCTACCACCCTATCAATCCACGGCTTACGCATCCCATCACTCTGGCCGGCGTAGTGCC
*
1045570 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCG-TTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
1045635 CGGACCGGACCGAGGGCTGTGGCAGCAGGATCGGCAGCATGGAGAGGAGGACCCGGCTGATCAAC
65 CAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCAAC
*
1045700 GCCTTGCACATCCCGCCCCTCTGGCAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAG
130 GCCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAG
1045765 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAC
195 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAC
*
1045830 CGTGGGATGCGGCAGCACATTCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGG
260 CGTGGGATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGG
*
1045895 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACCATCGGGGGGG
325 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATCGGGGGGG
1045960 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
390 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1046025 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
455 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
1046090 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
520 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
1046155 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCATGTCTGCCAAGTT
585 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* *
1046220 TTAGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATC
650 TTAGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA-CATCAAAAAGCTTCAAAAATC
1046284 ATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTA
714 ATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTA
*
1046349 TCAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCT
779 TCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
** * *
1046414 ACCACCCTATGGATCCACGGCTTGCGCATCCTATCACTCTGGCCGGCGTAGTGCC
844 ACCACCCTATCAATCCACGGCTTACGCATCCCATCACTCTGGCCGGCGTAGTGCC
* * * *
1046469 TG--C-CTC-CCCGTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATC
1 CGCCCGCCCGCCCGTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
1046530 AGACCAGACTGAGGGTTGTGGTAGCAGGATCGGTAGCATGTAGAGGAGGACCCGGCCGATCAACG
66 AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCAACG
* *
1046595 CCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGG
131 CCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
1046660 CATACGGAGTTCATTTCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
196 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
*
1046725 GTGGGATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTTGGGGC
261 GTGGGATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGC
*
1046790 ACCATCTTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATC-GGGGGGC
326 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATCGGGGGGGC
*
1046854 GGGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
391 GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1046919 CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
455 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
1046984 CAGTAGCCATTAAAGTGTCTGAAATGGGGACGA-TTTTTTCAAATGGTCACAAAATCTTGTTCAC
520 CAGTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * *
1047048 TTCGAGTTACTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
584 TTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * *
1047113 TTGGGGCCAAAACT-CTTTCCAAAAAAATTTGAAAAAATCCCG
649 TTTAGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCG
1047155 CACGCCCGCC
Statistics
Matches: 1460, Mismatches: 115, Indels: 25
0.91 0.07 0.02
Matches are distributed among these distances:
893 17 0.01
894 619 0.42
895 5 0.00
896 2 0.00
897 2 0.00
898 221 0.15
899 584 0.40
900 10 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CGCCCGCCCGCCCGTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCAACG
CCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
GTGGGATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGC
ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATCGGGGGGGC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
TAGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACATCAAAAAGCTTCAAAAATCAT
GAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATC
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCAATCCACGGCTTACGCATCCCATCACTCTGGCCGGCGTAGTGCC
Found at i:1046695 original size:26 final size:26
Alignment explanation
Indices: 1046659--1046711 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1046649 GTTGACTTAG
*
1046659 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1046685 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1046711 G
1 G
1046712 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1047381 original size:26 final size:26
Alignment explanation
Indices: 1047352--1047404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1047342 GTTGACTTAG
*
1047352 GCATACGGAGATCATTCCGAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
1047378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
1047404 G
1 G
1047405 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:1047835 original size:695 final size:692
Alignment explanation
Indices: 1046470--1047845 Score: 1958
Period size: 693 Copynumber: 2.0 Consensus size: 692
1046460 CGTAGTGCCT
* *
1046470 GCCTCCCCGTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGACC
1 GCCTCCCCGTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACC
* ** * ***
1046535 AGACTGAGGGTTGTGGTAGCAGGATCGGTAGCATGTAGAGGAGGACCCGGCCGATCAACGCCTTG
66 AGACTAAGGGTTACGGTAGCAGGATCGGCAGCACACAGAGGAGGACCCGGCCGATCAACGCCTTG
* * *
1046600 CGCATCCCGCCCCTCTGGCTGACTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
131 CGCATCCCACCCCTCTGGCGGACTGAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
1046665 GGAGTTCATTTCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGTGGG
196 GGAGATCATTTCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
* * * *
1046730 ATGCGGCAGCACATTCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTGTTCGTTGGGGCACCAT
261 ATGCGGCAGCACATTCTAGGCACAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
1046795 CTTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACCATCGGGGGGCGGGGGG
326 CGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACCATCGGGGGGCGGGGGG
* **
1046860 TGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
391 CGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
1046925 TCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
456 TCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAG
*
1046990 CCATTAAAGTGTCTGAAATGGGGACGATTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGT
521 CCATTAAAGTGTCTGAAATGGGGACGATTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGACT
* *
1047055 TACTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
586 TACTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGC
*
1047120 CAAAACTCTTTCCAAAAAAATTTGAAAAAATCCCGCACGCCC
651 CAAAACTCTTTACAAAAAAATTTGAAAAAATCCCGCACGCCC
* *
1047162 GCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGAC
1 GCCTCCCCGTT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGAC
* * * * * *
1047227 CGGA-TCAAGGGTTACGGTAGCAGGATTGGCATCACACAGAGG-GGAATCCGGCCGATCACCGGC
65 CAGACT-AAGGGTTACGGTAGCAGGATCGGCAGCACACAGAGGAGG-ACCCGGCCGATCAACGCC
* * * * *
1047290 TTGCGCATCCCACCCCTTTGGCGGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCA
128 TTGCGCATCCCACCCCTCTGGCGGACTGAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
1047355 TACGGAGATCA-TTCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACC
193 TACGGAGATCATTTCC-AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACC
* * * * *
1047418 GAGGGTTGCGGGAGCACATGT-TGGGCACGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGG
256 GAGGGATGCGGCAGCACAT-TCTAGGCACAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * *
1047482 CACCGTCGTCAGAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTTTCAACGATCGGGGGGG
320 CACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACCATC-GGGGGG
* *
1047547 CCGGGGGGCGTTTGCCCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
384 -CGGGGGGCGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
1047612 ATCCCTCATCAAACCTCAAGAACTCACAACCCCTTGAATAGCATTTAAGATTTTACAGGTTTGCT
448 ATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCT
*
1047677 GCCAGTAGCCATTAAAGTGTCTTG-AATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTTTT
513 GCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACGA-TTTTTTCAAATGGTCACAAAATCTTGTT
* ** *
1047740 GACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCA
576 CACTTCGACTTACTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* *
1047805 AGTTTGGAGCCAAAACGTC-TTACGAAAAAATTTTAAAAAAT
641 AGTTTGGAGCCAAAAC-TCTTTACAAAAAAATTTGAAAAAAT
1047846 TTCAAACTGT
Statistics
Matches: 602, Mismatches: 71, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
692 18 0.03
693 305 0.51
694 8 0.01
695 267 0.44
696 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (692 bp):
GCCTCCCCGTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACC
AGACTAAGGGTTACGGTAGCAGGATCGGCAGCACACAGAGGAGGACCCGGCCGATCAACGCCTTG
CGCATCCCACCCCTCTGGCGGACTGAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
GGAGATCATTTCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
ATGCGGCAGCACATTCTAGGCACAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
CGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACCATCGGGGGGCGGGGGG
CGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACGATTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGACT
TACTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGC
CAAAACTCTTTACAAAAAAATTTGAAAAAATCCCGCACGCCC
Found at i:1049009 original size:26 final size:26
Alignment explanation
Indices: 1048972--1049024 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1048962 GTTGACTTAG
*
1048972 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCAGGTCTAA
1048998 GCATACGAAGTTCATTCCAGGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
1049024 G
1 G
1049025 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGTCTAA
Found at i:1049764 original size:26 final size:26
Alignment explanation
Indices: 1049727--1049777 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1049717 GTTGACTTAG
*
1049727 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
1049753 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCAAGTCTA
1049778 GGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:1052891 original size:891 final size:885
Alignment explanation
Indices: 1050635--1054186 Score: 4245
Period size: 891 Copynumber: 4.0 Consensus size: 885
1050625 TAGGCATACG
* * * *
1050635 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGTTCAGGC
1 GAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* * ** ** * * *
1050700 ATGTGCTGATGTCATATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCAACGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
** ** * * * * *
1050765 CGGTGGCATTGGGGTT-CGACGATC--GA--CAT-TG-GCAGATGATGTGCGATGTGTACTGGTA
130 CGGCCGCATTGGGGTTCCGACGATCGGGAGGGGTGTGCACACATGATGTG-AATGGGTGCTGGTA
** * * * * *
1050823 GTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTAAAAGAGC
194 CCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1050888 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
1050953 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAA
* * * *
1051018 ATACAAGGGTCACGTCTACCAAGTTTGGG-CCAAAACTCCTTTCGAAAAGATTTTAAAAAATCCT
388 ATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* *
1051082 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
453 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCAC
1051147 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
518 GTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
1051212 AGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTG
582 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-GGCTTGCGCATCCCGTCTCTCTG
* * * ** * *
1051277 GCC-AGCGTAG-TGCCCACCCGCCCACTTGCTCGTTTCGTCAGTTGGCTAAGGCATACGGAGTTC
646 GCCGA-CGTAGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** *
1051340 ATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTACGGTAGCGGGATCGGTAG-ATCACAGAGTG
710 ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAGGATCGACAGCAT-GCAGAG-G
* * * * * * *
1051404 GGACCCGACTGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGTGCCCGCAAGCTCAT
773 GGACCCGACAGATCCCCGACTTGAGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCAT
*
1051469 TTCGTAGGTTGACT-----TA--G-G--------CA---T-A-CG---
838 TTCGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTAA
* *
1051493 GAGTTCATTCCCAGACTAAGATTAGACTGGACTGAGGGTTAC-AGCAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATTAGAC-GGACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGG
*
1051557 CATGTACTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
64 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
* *
1051622 TCGGCCGCATTGGGGTTCCGACGATCGGGGGGGCGGAGGGGTGTGCGCACATGATGTGAGATGGG
129 CCGGCCGCATTGGGGTTCCGACGATC------G-GGAGGGGTGTGCACACATGATGTGA-ATGGG
* *
1051687 TGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
186 TGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1051752 TCAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG-TCGTTAAAGTGTCTGAAATGGGGAC
251 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCT-ATTAAAGTGTCTGAAATGGGGAC
* *
1051816 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAAG
315 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
1051881 CCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACA-CCTTCTGAAAAAATTTT
380 CC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAA-ATCCTTCCGAAAAAATTTT
* * *
1051945 CAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
443 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCAT
* * *
1052010 GAAACTTCACCTGAAGCCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
508 GAAACTTCACGTGAAGGCTTAAGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
1052075 ATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
572 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-GGCTTGCGCATCC
* *
1052140 CGTCTCTCTGGCCGACGTAG-AGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCAT
636 CGTCTCTCTGGCCGACGTAGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
1052204 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATAGCAGTAGGAT-TAGCAGCA
701 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAGGATCGA-CAGCA
* * * * * *
1052268 TGCAGAGTGGGACCCGACTGATCCTCGGCTTAAGCATCCCGCCCCTTTTGCCGGCTGAGCGCCCG
765 TGCAGAG-GGGACCCGACAGATCCCCGACTTGAGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCG
* * *
1052333 TACGCTTATTTCGTGGGTTGACTAAGGCATGCGGAGTTCATTCCCAGTCTAAGCGTACA
829 CACGCTCATTTCGTGGGTTGACT-AGGCATACGGAGTTCATTCCCAGTCTAAGCGTA-A
* * * *
1052392 GAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGCGTTACGACAGCACATGCTGGGCACGGGT
1 GAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* *
1052457 ATGTGCTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATTACCGGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
1052521 CCGGCCGCATTGGGGTTCCGACGATCGGG-GGGGTGTGCACACATGATGTGCAATGGGTGCTGGT
129 CCGGCCGCATTGGGGTTCCGACGATCGGGAGGGGTGTGCACACATGATGTG-AATGGGTGCTGGT
* * *
1052585 ACCTAGTCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
193 ACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
1052650 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCTTTTAAAGTGTCTGAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
1052715 CAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCATCAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAA
1052780 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
387 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
* *
1052845 -CAAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCCTGCCATGAAACTTC
452 TGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTC
* *
1052909 ACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
516 ACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
1052974 ATATGAAGATGTGCCCAAACCC-CCTACCACCCTATCGATCCAGAACTTGCGCATCCCATATCTC
580 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAG-GCTTGCGCATCCCGTCTCTC
* * * *
1053038 TGGCCG--GT-GTAG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTACGCATACAGAGTT
644 TGGCCGACGTAGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** *
1053098 CATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGCAGGATCGACAGCATGTAGAGGG
709 CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAGGATCGACAGCATGCAGA-GG
* * * * * *** *
1053163 GGACTCGACAGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCATTCGGACGCTCAT
773 GGACCCGACAGATCCCCGACTTGAGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCAT
* *
1053228 TTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-T-A
838 TTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAAGCGTAA
* * *
1053270 -AG---A-T--C-G-----GATT----GGACCAAGGGTTGCTG-CAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATTAGACGGACCGAGGGTTAC-GACAGCACATGCTGGGCTCGGGC
** ** *
1053317 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGGGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* ** * * *
1053382 TGGTGGCATTAGGGTTCCGGTGATCGAGGGGGCCGGGAGGGGTGTGCACACATGATGTGTGATGG
130 CGGCCGCATTGGGGTTCC---GA-CGA-----TCGGGAGGGGTGTGCACACATGATGTG-AATGG
* * * *
1053447 CTGCTGGTA-CTGGGCCCTTATACTGGCCCGCTATCCCACATCAAACCTCGAGAACTCACACCCC
185 GTGCTGGTACCT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1053511 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
249 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGA
* ** * *
1053576 CACTTTTTTCAAATGATTGCAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTTTTGTGCAT
314 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1053641 GCCAAAAAAATTACAAGGATCATGTCTACCAAGTTTGGGGA-CAAAACTCCTTCCAAAAAAATTT
379 GCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTT-GGGACCAAAAATCCTTCCGAAAAAATTT
* * *
1053705 AAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCA
442 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCA
*
1053770 TGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGG
507 TGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
1053835 CATGCAGCAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
571 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-GGCTTGCGCATC
* * * *
1053900 CCGTCTCTCCGACCGACGTAGTGCCCACCCGTCCACCCGCCCACCCGCCCGCTCGTTCCGTCGGT
635 CCGTCTCTCTGGCCGACGTA--G--CA---G----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
1053965 TGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCAAGGGTTGCAGTAGCA
689 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTACAGTAGCA
* * * *
1054029 GGATCGACAGCATGCAGAGGTGGACCTAGCCA-ATCCCCGTCTTGAGCATCCCGCCCCTCTAGGC
753 GGATCGACAGCATGCAGAGG-GGACC-CGACAGATCCCCGACTTGAGCATCCCGCCCCTCTAGCC
* * *
1054093 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCGTTCCCAGTCTAA
816 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA-CTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1054158 GCGTATG
880 GCGTA-A
1054165 GAGTTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
1054187 CGGATCAGAT
Statistics
Matches: 2318, Mismatches: 252, Indels: 198
0.84 0.09 0.07
Matches are distributed among these distances:
857 2 0.00
858 123 0.05
859 8 0.00
860 99 0.04
861 2 0.00
863 2 0.00
864 3 0.00
865 4 0.00
868 2 0.00
869 11 0.00
870 397 0.17
871 49 0.02
872 228 0.10
873 386 0.17
874 4 0.00
876 1 0.00
877 2 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 3 0.00
882 1 0.00
884 1 0.00
886 182 0.08
887 179 0.08
888 8 0.00
889 2 0.00
890 48 0.02
891 403 0.17
892 7 0.00
893 3 0.00
894 1 0.00
895 2 0.00
896 2 0.00
898 1 0.00
899 140 0.06
900 3 0.00
902 1 0.00
903 1 0.00
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GAGTTCATTCCCAGTCTAAGATTAGACGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
GGCCGCATTGGGGTTCCGACGATCGGGAGGGGTGTGCACACATGATGTGAATGGGTGCTGGTACC
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAA
CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTG
AAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAGGATCGACAGCATGCAGAGGGGACCCGA
CAGATCCCCGACTTGAGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
TTGACTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTAA
Found at i:1053658 original size:870 final size:868
Alignment explanation
Indices: 1049753--1054158 Score: 5331
Period size: 861 Copynumber: 5.0 Consensus size: 868
1049743 CCAAGTCTAA
* * * * * *
1049753 GCATACGAAGTTCATTCCCAGTCTAGGATCAGATCGAATCGAGGGTTACGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTAC-GCAGCACATGCTGGG
* * * *
1049818 CTCGAGCATGTGCTGGTGCCATATTTTTCTTTATCGGGGCACCATCGTCGGAGCATC-ACTGGGG
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAAC-GGAG
* * ** * * * *
1049882 AACCTGACCGATGGAATTACGATTCTGACAATCGGGGGGGTCGG-GGGGTGTGCGCACATGATGT
129 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGTCGGAGGGGTGTGCGCACATGATGT
*
1049946 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1050011 CACACCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1050076 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
1050141 GTGCATGCCAACAAAATAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTAGGA
389 GTGCATGCCAAAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
* * * * *
1050206 AATTTT-AAAAAT-CTCGAACCGTGAAAAGTTTTAAAAAACGTAAAAAATAGAAAACGAGTCATC
453 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * **
1050269 TTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTCACAAGATATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
1050334 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
1050399 TGCATTCCATCTCTCTGGCCGGCGTGGTGCCCTCCCATCTGCCCGACCGCTAGTTTCATCGATTG
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTG-----CC--C-GCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
1050464 GCTTAGGCATACGGAGTTCATTCCCAGTCTAA-ATCGGACCGGACCGATGGTTGCAGTAGTAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGTAGCAGGA
* ** * * * * * * * * *
1050528 TTGGTAACACGTAGAGGGGGACCTGGTC-GATCCTCGGCTTGGGCAT-GTCGCCCCTCTGGTCGG
769 TCGACAGCATGCAGAGGGGGA-CTCGACAGATCCCCGGCTTGAGCATCCT-GCCCCTCTGGCCGG
* * *
1050591 CTGAGCGCCCTCACGCTCGTTTCGTGGGTTAACTTAG
832 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
** *
1050628 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTACG-CAGCACATGCTGGG
* * * * ** * *
1050693 TTC-AGGCATGTGCTGATGTCATATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCAACGGAG
65 CTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAACGGAG
*
1050757 AACCTGACCGGTGGCATTGGGGTT-CGACGATCGA------C--A----T-TG-GCAGATGATGT
129 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGTCGGAGGGGTGTGCGCACATGATGT
* * * * * * *
1050807 GCGATGTGTACTGGTAGTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTTGGGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1050872 CACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1050937 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1051002 GTGCATACCAACAAAAATACAAGGGTCACGTCTACCAAGTTTGGG-CCAAAACTCCTTTCGAAAA
389 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
*
1051066 GATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
1051131 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1051196 ATTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
1051261 GCTTCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCACTTGCTCGTTTCGTCAGTTGGCTAA
648 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTA
* * * **
1051326 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTACGGTAGCGGGATCGGT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGTAGCAGGATCGAC
* * * * *
1051391 AG-ATCACAGAGTGGGACCCGACTGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAG
774 AGCAT-GCAGAGGGGGACTCGACAGATCCCCGGCTTGAGCATCCT-GCCCCTCTGGCCGGCTGAG
* * *
1051454 TGCCCGCAAGCTCATTTCGTAGGTTGACTTAG
837 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
1051486 GCATACGGAGTTCATTCCCAGACTAAGATTAGACTGGACTGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTAC-GCAGCACATGCTGGG
* * * *
1051551 CTCGGGCATGTACTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAACGGAGA
* ** *
1051616 ACCTGATCGGCCGCATTGGGGTTCCGACGATCG-GGGGGGCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGTCGGAGGGGTGTGCGCACATGATGTG
* *
1051680 AGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1051745 ACCCCCTTCAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1051810 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1051875 TGCAAGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACACCTTCTGAAAAA
390 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
* * *
1051940 ATTTTCAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1052005 GCCATGAAACTTCACCTGAAGCCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1052070 TTGGTATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1052135 CATCCCGTCTCTCTGGCCGACGTAG-AGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCG--GT-GTAG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
1052199 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATAGCAGTAGGAT-TAG
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGTAGCAGGATCGA-
* * * * * * * *
1052263 CAGCATGCAGAGTGGGACCCGACTGATCCTCGGCTTAAGCATCCCGCCCCTTTTGCCGGCTGAGC
773 CAGCATGCAGAGGGGGACTCGACAGATCCCCGGCTTGAGCATCCTGCCCCTCTGGCCGGCTGAGC
* * *
1052328 GCCCGTACGCTTATTTCGTGGGTTGACTAAG
838 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
1052359 GCATGCGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCTAGTCTAAGATTAGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---------A-TC--AGATT-----GGAC
* * * *
1052424 CGAGCGTTACGACAGCACATGCTGGGCACGGGTATGTGCTGGTGCCGTATTTTTCTTC-CTCGGG
40 CGAGGGTTACG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCAC-CGGG
* * **
1052488 GCACCATCGTCGGAGCATTACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGACGATC------
103 GCACCATCGTCGGAGCATCAACGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGG
* * * * * *
1052547 G--GG-GGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACCTAGTCCTTATGTTGGCCCCCT
168 GTCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1052609 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* **
1052674 ACCAGTAGCTTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
1052739 CTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAG
* *
1052804 TTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC-CAAGCCGTAAAAAGTTTCAAAAA
427 TTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-CCGTAAAAAGTTTCAAAAA
* * * *
1052868 TCATGAAAAATAGAAACCGAGTCGTCCTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
1052933 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCC-C
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
1052997 CTACCACCCTATCGATCCA-GAACTTGCGCATCCCATATCTCTGGCCGGTGTAGTGCCCGCCCGC
621 CTACCACCCTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGC
* * * *
1053061 CCGCTCGTTTCGTCGGTTGGCTTACGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACT
685 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * *
1053126 GAGGGTTACAGTAGCAGGATCGACAGCATGTAGAGGGGGACTCGACAGATCCCCGACTTGCGCAT
750 GAGGGTTACAGTAGCAGGATCGACAGCATGCAGAGGGGGACTCGACAGATCCCCGGCTTGAGCAT
* *** * *
1053191 CCTGCCCCTCTGGTCGGCTGAGCATTCGGACGCTCATTTTGTGGGTTGACTTAG
815 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
1053245 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTAC-GCAGCACATGCTGGG
* ** ** *
1053310 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGGGA
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAACGGAGA
* * ** * *
1053375 ACCTGACTGGTGGCATTAGGGTTCCGGTGATCGAGGGGGCCGGGAGGGGTGTGCACACATGATGT
130 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGTC-GGAGGGGTGTGCGCACATGATGT
* * * * * *
1053440 GTGATGGCTGCTGGTACTGGGCCCTTATACTGGCCCGCTATCCCACATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1053505 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * *
1053570 TGGGGACACTTTTTTCAAATGATTGCAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1053635 GTGCATGCCAAAAAAATTACAAGGATCATGTCTACCAAGTTTGGGGA-CAAAACTCCTTCCAAAA
389 GTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCGAAA
* *
1053699 AAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1053764 CTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAACCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1053829 CATTGGCATGCAGCAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1053894 CGCATCCCGTCTCTCCGACCGACGTAGTGCCCACCCGTCCACCCGCCCACCCGCCCGCTCGTTCC
647 CGCATCCCGTCTCTCTGGCCG--GT-GT----A---GT------GCCCGCCCGCCCGCTCGTTTC
* * * * *
1053959 GTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCAAGGGTTGCA
696 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACA
* * * * *
1054023 GTAGCAGGATCGACAGCATGCAGAGGTGGACCTAGCCA-ATCCCCGTCTTGAGCATCCCGCCCCT
760 GTAGCAGGATCGACAGCATGCAGAGGGGGA-CTCGACAGATCCCCGGCTTGAGCATCCTGCCCCT
* * *
1054087 CTAGG-CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACCTAG
824 CT-GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
1054132 GCATACGGAGTTCGTTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
1054159 CGTATGGAGT
Statistics
Matches: 3060, Mismatches: 361, Indels: 208
0.84 0.10 0.06
Matches are distributed among these distances:
853 4 0.00
854 2 0.00
855 1 0.00
856 2 0.00
857 48 0.02
858 230 0.08
859 10 0.00
860 124 0.04
861 421 0.14
862 9 0.00
863 1 0.00
864 1 0.00
865 4 0.00
866 2 0.00
867 2 0.00
868 2 0.00
869 7 0.00
870 397 0.13
871 49 0.02
872 228 0.07
873 391 0.13
874 14 0.00
875 130 0.04
876 5 0.00
877 10 0.00
878 3 0.00
879 1 0.00
880 1 0.00
881 4 0.00
882 2 0.00
884 1 0.00
886 182 0.06
887 184 0.06
888 11 0.00
889 1 0.00
890 45 0.01
891 406 0.13
892 3 0.00
894 5 0.00
898 2 0.00
899 115 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTACGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCAACGGAGAA
CCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGTCGGAGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGTAGCAGGATCGACAGCATGC
AGAGGGGGACTCGACAGATCCCCGGCTTGAGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAG
Found at i:1054291 original size:185 final size:185
Alignment explanation
Indices: 1053973--1054376 Score: 603
Period size: 185 Copynumber: 2.2 Consensus size: 185
1053963 GTTGGCTTAG
* * * * * *
1053973 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAAAGGTTGCAGCAACAGGATCGACA
* * * * *
1054038 GCATGCAGAGGTGGACCTAGCCAATCCCCGTCTTGAGCATCCCGCCCCTCTAGGCGGCTGAGCGC
66 GCACGCAGAGGTGAACCGAGCCAATCCCCGGCTTGAGCATCCCGCCCCTCTAGGAGGCTGAGCGC
* *
1054103 CCGCACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCGTTCCCAGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACCTAGGAATACGGAGTTCATTCCCAGTCTAA
* * *
1054158 GCGTATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAAAGGTTGCAGCAACAGGATCTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAAAGGTTGCAGCAACAGGATCGACA
* *
1054223 GCACGCAGAGGTGAACCCGA-CCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGAGGCTGAGCG
66 GCACGCAGAGGTGAA-CCGAGCCAATCCCCGGCTTGAGCATCCCGCCCCTCTAGGAGGCTGAGCG
* *
1054287 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGACCTAGGAATACGGAGTTCATTCCCAGTCTAA
*
1054343 GCATACGGAGTTCCTTCCCAGTCTAAGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1054377 TGGACAAAGG
Statistics
Matches: 196, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
185 193 0.98
186 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAAAGGTTGCAGCAACAGGATCGACA
GCACGCAGAGGTGAACCGAGCCAATCCCCGGCTTGAGCATCCCGCCCCTCTAGGAGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACCTAGGAATACGGAGTTCATTCCCAGTCTAA
Found at i:1054355 original size:26 final size:26
Alignment explanation
Indices: 1054319--1054369 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1054309 TGACTTAGGA
1054319 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
1054345 ATACGGAGTTCCTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1054370 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1055273 original size:26 final size:26
Alignment explanation
Indices: 1055222--1055273 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1055212 GTTGACTTAG
* * *
1055222 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1055248 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1055274 TATCAGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1055742 original size:26 final size:26
Alignment explanation
Indices: 1055686--1055735 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
1055676 CTCCTTTTGA
***
1055686 AAAAATTTTAAAAAATCTTGAACCGC
1 AAAAATTTTAAAAAATCTTGAAAAAC
1055712 AAAAA-TTTAAAAAATCTTGAAAAA
1 AAAAATTTTAAAAAATCTTGAAAAA
1055736 TACAAAACGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCTTGAAAAAC
Found at i:1056137 original size:26 final size:26
Alignment explanation
Indices: 1056108--1056160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1056098 GTTGACTTAG
*
1056108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1056134 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1056160 G
1 G
1056161 ATCAGACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1056919 original size:907 final size:894
Alignment explanation
Indices: 1054164--1057507 Score: 4392
Period size: 907 Copynumber: 3.7 Consensus size: 894
1054154 CTAAGCGTAT
* * * **
1054164 GGAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCAAAGGTTGCAGCAACAGGATCTACAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-AAGGGTTGCAGCAGCAGGATCGGCAGCACG
* * * * **
1054228 CAGAGGTGAACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGAGGCTGAGCGCCCGCA
65 CAGAGGGGGACCCGAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
1054293 CGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCT
130 CGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* ** * **
1054358 TCCCAGTCTAAGATCGGATTGGACAAAGGGTTGCTGCTGCACATGCTGGGCTCGGGCATGTGCTG
195 TCCCAGTCTAAGATCAGA-CCGACCAAGGGTTGCTGAAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * ** *
1054423 GTGCCGCATTTTTCTCTGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACAGGCGGCA
259 GTGCCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCA
*
1054488 TTGGGGTTCTGGCGATCGGGGGGGCCGGTGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
324 TTGGGGTTCCGGCGATC-GGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
* *
1054553 TCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACACCCCCTTAAAGAG
386 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
1054618 CATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
451 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
1054683 CAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAAGAA
516 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAA-AA
* * * **
1054748 AAATACGAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTTGAAAATATTTTAAAAATCC
579 AAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAAAAAC
* * * *
1054813 TGAACCGTAAAAAGTTTCGAAAATCCTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
644 TGAACCGCAAAAA-TTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * *
1054878 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAAAAA
708 CGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
1054943 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
773 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * *
1055008 GGCCGGTATAGTGCCCGCCCGTCCGCCCGCTCGCTTGTTCCGTCGGTTGGCTTAGGCATAC
838 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT--CAT-TT-CGTCGGTTGGCTTAGGCATAC
* * * * *
1055069 GGGGTTCATTCCCAGTCTAAGAGCAGACCAGACTGAGGGTTGCAGCAGCAGGAT-GGACAGCATG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCAGCAGCAGGATCGG-CAGCACG
** * * *
1055133 CAGAGGGGGACCCGGTCGATCCCCGGCTTACGTATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
65 CAGAGGGGGACCCGAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
1055198 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCA
130 CGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCA
* * *
1055262 TTCCCAGCCTAATATCAGATCAGACCAAGGGTTGCTGCAA-CACATGCTGGGCTCGGGCATGTGC
194 TTCCCAGTCTAAGATCAGA-CCGACCAAGGGTTGCTG-AAGCACATGCTGGGCTCGGGCATGTGC
* * *
1055326 TGGTGCCACATTTTTC----TC----CACC--GA--GGCACCATCACCGGAGAACCTGACCGACG
257 TGGTGCCACATTTTTCTTTGTCGGGGCACCATCATCGG-AGCATCACCGGAGAACCTGACCGGCG
* * * * *
1055379 GCATTGGGGTTCCGGCGATCAGGGGGTCGGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGT
321 GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
* * *
1055444 TCTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGCA-AACTCGCACCCCCTTAAAGA
386 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGA
*
1055508 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
450 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * ** *
1055573 TCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCAGCTTTTTTTTGTGCATGCCATGAA
515 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAA
* * * *
1055638 AAATACAAGGATCACATCTACCATGGTTT-GGCCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT
579 AAATACAAGGATCACGTCTACCA-AGTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAAAAA
** * * *
1055702 CTTGAACCGCAAAAATTTAAAAAATCTTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTC
643 C-TGAACCGCAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
1055767 ACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
707 ACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
1055832 ATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
772 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
1055897 TGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
837 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
1055955 GGAGTACATTCCCATTCTAAGATCAGA-CCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACA
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACTAAGGGTTGCAGCAGCAGGATCGGCAGCACG
* ***
1056019 CAGAGGGGGACCCGAACGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCTTTA
65 CAGAGGGGGACCCGAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
1056084 CGCTCATTTCTTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
130 CGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* *
1056149 TCCCAGTCTAAGATCAGACCGTAGCGAGGGTTG-TAGAAGCACATGCTGGGCTCGGGCATGTGCT
195 TCCCAGTCTAAGATCAGACCG-ACCAAGGGTTGCT-GAAGCACATGCTGGGCTCGGGCATGTGCT
* *
1056213 GGTGTCACATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGC
258 GGTGCCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGC
* * *
1056278 ATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGTGCCCATGATGTGCAATGGGTGTTGGTA
323 ATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
1056343 CTTGGCCCTTATATTTGG-CCCCTATCCCTCATCAAACCCTCGAGAACTCACACCCCCTTAAAGC
387 CTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAG-
* * * * *
1056407 AGCA-TTGAGATTTTACA-GCTTGCTGCCAGTAGCCATT-GAGGGTCCGAAATGGGGACATTTTT
449 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTT
* * *
1056469 TTTCAAGTTGGTTCACAAAATCCTGTTACACTTCGACTTTTTAGTTGAATTTTTTTGTGCATGCC
513 TTTCAA-ATGG-TCACAAAATCCTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
1056534 AAAAAAATGGCAAGGATCACGGCTACCAAGATTTGGGGCC-AAACTCCTTTCCGAAAAAATTTTA
575 AAAAAAAT-ACAAGGATCACGTCTACCAAG-TTTGGGCCCAAAACTCCTTT-CGAAAAAATTTTA
* * * *
1056598 AAAAAACTCGAATCGCAAAAATTTTTGAAAATTCATGAGAAGATAGAAAAATGAGTCATTATTG-
637 AAAAAACT-GAACCGCAAAAA-TTTTGAAAA-TCATGA-AAAATAG-AAAATGAGTC-GTCTTGC
* ** *
1056662 CATGTGAAACTTCACGTAAAGGCTTAA-GGATTATTGTATGAATTTACAAGCCATAAAAAGGGCA
696 CA--TGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1056726 CTGCCACGTAGAAATATGAAGATGT-CCGTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
759 TTGGCATGCAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1056790 GCATCCGGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCACTCATTTCATCGGTTGGCTTA
823 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
1056855 GGCATAC
888 GGCATAC
* * *
1056862 GGAGTTCATTCCCAGTCTAAGATTAGATCAGACTAAGGGTTACGGCAGC-GAGATCGGCAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCAGCAGCAG-GATCGGCAGCACG
* * * *
1056926 TAGAGGGGGACCC-AACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGC
65 CAGAGGGGGACCCGAA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
1056990 ACGTTCGTTTCTTAGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
129 ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * * * * *
1057055 TTCCCAGTCTAAGATCGGCCCAAACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
194 TTCCCAGTCTAAGATCAGACC-GACCAAGGGTTGCTGAAGCACATGCTGGGCTCGGGCATGTGCT
* *
1057120 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGC
258 GGTGCCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGC
* **
1057185 ATTAGGGTTCCGGCGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
323 ATTGGGGTTCCGGCGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
* * *
1057250 CTTGGCCATTATATTGGTCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
387 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * **
1057315 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATAAGGACACTTTTTTC
452 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
1057380 AAATGGTCACAAAATCTTATACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
517 AAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAA
* * *
1057444 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAAC
580 AATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAAAAAC
1057508 CTGACTGACG
Statistics
Matches: 2149, Mismatches: 228, Indels: 126
0.86 0.09 0.05
Matches are distributed among these distances:
885 7 0.00
886 251 0.12
887 5 0.00
888 2 0.00
890 272 0.13
891 210 0.10
892 1 0.00
893 8 0.00
894 44 0.02
896 1 0.00
897 71 0.03
898 91 0.04
899 42 0.02
900 23 0.01
901 66 0.03
902 33 0.02
903 36 0.02
904 65 0.03
905 266 0.12
906 63 0.03
907 545 0.25
908 47 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCAGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
CCCAGTCTAAGATCAGACCGACCAAGGGTTGCTGAAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
GGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAAAAACTGAACCG
CAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
Found at i:1057051 original size:26 final size:26
Alignment explanation
Indices: 1057015--1057067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1057005 GTTGACTTTG
1057015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1057041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1057067 G
1 G
1057068 ATCGGCCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1057829 original size:333 final size:334
Alignment explanation
Indices: 1057203--1057838 Score: 1026
Period size: 333 Copynumber: 1.9 Consensus size: 334
1057193 TCCGGCGATC
* * ** *
1057203 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGT
1 CGGGGGGACGGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCATTATATTGGC
*
1057268 CCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
66 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1057333 TTGCTGCCAGTAGCAATTAAAGTGTCTAAAATAAGGACACTTTTTTCAAATGGTCACAAAATCTT
131 TTGCTACCAGTAGCAATTAAAGTGTCTAAAATAAGGACACCTTTTTCAAATGGTCACAAAATCTT
* *
1057398 ATACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
196 ATACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTA
*
1057463 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCTGACTGACGGCACTGGAGT
261 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAACCTGACTGACGGCACTGGAGT
1057528 TCTGGCAAT
326 TCTGGCAAT
*
1057537 CGGGGGGACGGGGGG-GTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
1 CGGGGGGACGGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCATTATATTGGC
1057601 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
66 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * ** ** *
1057666 TTGCTATCAGTGGCCATTAAAGTGTTTGGAATGGGGACACCTTTTTCAAATTGTCACAAAATCTT
131 TTGCTACCAGTAGCAATTAAAGTGTCTAAAATAAGGACACCTTTTTCAAATGGTCACAAAATCTT
* *
1057731 GTACAC-TTCGAGTTTTTAGCTGAATTTTTTTTTGCAAGCCAAAAAAAATACAAGGATCACGTCT
196 ATACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCT
1057795 ACCAAGTTTGGGGCCAAAACAT-CTTCCAAAAAAATTTTAAAAAA
260 ACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTTAAAAAA
1057839 TCCTAAACCG
Statistics
Matches: 277, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
332 3 0.01
333 259 0.94
334 15 0.05
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (334 bp):
CGGGGGGACGGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCATTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTACCAGTAGCAATTAAAGTGTCTAAAATAAGGACACCTTTTTCAAATGGTCACAAAATCTT
ATACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAACCTGACTGACGGCACTGGAGT
TCTGGCAAT
Found at i:1060541 original size:26 final size:26
Alignment explanation
Indices: 1060501--1060552 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1060491 GTTGACTTAG
* *
1060501 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
1060527 GCATATGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
1060553 TATCGGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:1062011 original size:26 final size:27
Alignment explanation
Indices: 1061982--1062035 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
1061972 GTTGACTTAG
1061982 GCATACGGAGTTCA-TTCCCAATCTAA
1 GCATACGGAGTTCAGTTCCCAATCTAA
*
1062008 GCATACGGAGTTCAGTTCCCAGTCTAA
1 GCATACGGAGTTCAGTTCCCAATCTAA
1062035 G
1 G
1062036 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCAGTTCCCAATCTAA
Found at i:1062924 original size:26 final size:26
Alignment explanation
Indices: 1062887--1062939 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1062877 GTTGACTTAG
1062887 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1062913 GCATACCG-AGTTCATTCCCAGTCTAA
1 GCATA-CGAAGTTCATTCCCAGTCTAA
1062939 G
1 G
1062940 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1063804 original size:903 final size:898
Alignment explanation
Indices: 1061813--1075152 Score: 16157
Period size: 892 Copynumber: 15.1 Consensus size: 898
1061803 TCTACCAAGT
* * * * *
1061813 TTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
** * *
1061878 GGAATCGACAGCACGCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCTGCCCCTCTGGCA
65 GG-ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
1061943 GACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1062008 GCATACGGAGTTCAGTTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGCACATGCTGG
194 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGG
* * * * *
1062073 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAG
257 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * * *
1062138 AACCTGATCGGCGACATGGGGGATCCGGCGATCGGGGGGGTCGATGGGGTGTGCGTACATGATGT
322 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
1062203 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAGAACTC
386 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTC
*
1062267 ACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGC-GCCAGTAGCCATTAAAGTGTCTGAA
450 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * ** *
1062331 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTT
515 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * * *
1062396 TTCTGCATGCCAACAAAAAGACAGGGATCACGTCTACCAAGTTTGGGGCTAAATCTCCTTCTGAA
579 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
1062461 AAAA-TTTAGAAAAATCCCGAACCGT-AAAAGTATT-GAAAATCGTGAAAAATAGAAAACGAGTC
644 AAAATTTTA-AAAAATCTCGAACCGTAAAAAGT-TTCGAAAATCGTGAAAAATAGAAAACGAGTC
1062523 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
707 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1062588 TGGCAATTGGCAAGCAGAAATGTGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGG
772 TGGC-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * ** *
1062653 CTTGCGCGTCCCGTCTCTCTAGCCGTCGTAGTGCCCCCCCGCCCGTTCGCCCGCTCGTTTCGTCG
836 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CCCCCGCCCGCCCG-CTGCTCGTTTCGTCG
1062718 G
898 G
* * * * *** *
1062719 TTGGCTTAGGTATACGGACTTCATTCCTAGTCTAAGATCGGACCGGACC-ACAAATTGCAGCAGT
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGA-GGGTTGCAGCAGC
* * * * * * * * *
1062783 AGAAT-TAGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGTATCCCACTCCTCCGGT
64 AGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
1062847 TGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
128 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
1062912 AGCATACCGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCAGCAGCACATGCTGG
193 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGG
* * * *
1062977 GTTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCTTCGCCGGAG
257 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** *
1063042 AACTTGATCGGCGACATTAAGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
322 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
1063107 CGATGGGTGCTAGTACTTGGCTCTTATATTGGCACCCTATCCCTTATCAAACCTTGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * **
1063172 ACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTACCAGTAGCTTTTAAAGTGTCTGAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1063237 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1063302 TGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAA
582 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1063367 AATTTTAAAAAATC-CGAACTGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCT
646 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1063431 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
711 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1063496 ATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGC
776 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
1063561 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCATTCGCCCGCCCGCCTGCTTATTTCGTCGG
841 GCATCCCGTCTCTCTGGCCGACGTAGTGCCC--CCGCCCGCCCG-CTGCTCGTTTCGTCGG
* **
1063622 TTGGCTTAGGCATATGGAGTTCATTACCAGTCTAAGATCAGACCAGATTGAGGGTTGCAGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * *
1063687 GGATCGACAGCACGCAGAGGGAGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCCGGCTG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
1063752 GCTAAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
1063817 CATGCGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACTGAGGGTTAGGGCAGCACATGCTAGG
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTT-GCGCAGCACATGCTGGG
* * * * **
1063881 CCCGGGCATGTGCTGGTGCCACATTTTTCTTCGAT-GGGGCACCATCGCCGAAGCAACGTAGGAG
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** ** *
1063945 AACCTGACCGACGACATTAGGGTTCCGATGATCGGGGGGGCTAGGGGGTGTGCACACATGATGTG
322 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1064010 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCTAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1064075 ATCCCCTTAAGGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1064140 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTGTTTAGCTGAATTTTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * **
1064205 TGCAAGCCAAGAAAACTTCAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
1064270 AGTTTAAAAAATC-CTGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCT
647 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1064334 TGCCATGAAACTTCACGTGAAGG-TTGAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
711 TGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1064398 CATTGGCACGCAGAAATAT-AGAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTT
775 CATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
1064462 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGCTTATTTCGTCGG
839 GCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCGCCCGC-TGCTCGTTTCGTCGG
* * * *
1064525 TTGGCTTAGGCATATGGAGTTCATTCCGAGTCTAAGATCAGATCAGACTGGGGGTTGCAGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * * *
1064590 GGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
1064655 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * *
1064720 CATGCAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGACAGCACATGCTGGGC
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGC
* * *
1064785 CCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA---CCGAAGAA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * ** ** *
1064839 CCTGACCGACGACATTAGGGTTGCAACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGTG
324 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1064904 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCTAGAACTCACAC
389 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1064969 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
454 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1065034 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTG
519 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
1065098 CATG-C--C----A-AC-A--ATC-C-T-T-CC---------G--AAAAATCCTTCCGAAAAAAT
584 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
1065137 TTTAAAAAATCCTC-AACCGCAAAAAGTTTCAAAAATCATGAAAAATATAGAACGAGTCGTCTTG
649 TTTAAAAAAT-CTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
1065201 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
713 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
1065266 TGGCATGTAGAAATATGAAGATCTTCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
778 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
1065331 GTCCCGTCTCTC--GACGACGTAGTGCCTGCTCGCCTGGCCGCTCGCTC-ATT--TCAG
843 ATCCCGTCTCTCTGGCCGACGTAGTGCC--CCCGCCCGCCCGCT-GCTCGTTTCGTCGG
* * ** * *
1065385 TTGGATTAGGCATACGAAGTTCATTCCCAAACTAAGATCAGACCAG--C------T-AAG-GGC-
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * * * * * *
1065439 -TAT-GACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTACACATCCCGCCCCTCTAGCTG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
1065502 GCTGAGCGCCTGCCCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** *
1065567 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCACCAGCACATGCTGGGC
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGC
* * *
1065632 TCAGGCATGTGCTGGTACCGCATTTTTCTTCGTC-GAG-A-CA----C----CATCGCCGGAG-A
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* *
1065685 --T------C--C--T--GG---C--CGA-----------GAGGGGTGTGCGCACATGATGTGTG
324 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
1065720 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAA
389 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
1065785 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTAAAATGT
454 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1065850 GGACACTCTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
519 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * **
1065915 CATGCCAA-AAAAATACAAGGATTGCGTGTACCAAGTTTGGGGCCAAAAGACCTTCCGAAAAAAT
584 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * *
1065979 TTTAAAAAATCTCAAACCGTAAAAATTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGC
649 TTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
1066044 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
714 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
1066109 GCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCATATCGATCCACAGCTTGCGCA
779 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
1066174 TCCCGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGTCCGGTCGCTCGTTTCGTCGG
844 TCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCGCCCGCT-GCTCGTTTCGTCGG
* *
1066232 TTGGATTAGGCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTG-AGGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA-GCAGCA
** * *
1066296 GGATCGACAGCACATAGAGGGGTACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
1066361 GCTGAGCGCCCGCATGCTCCTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCAAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
1066426 CATACGGAGTTCATTCCAAGTCTAAGATCGGACC-GCACCGAGGGTTGCGATAGCACATGCTAGG
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCG-CAGCACATGCTGGG
* **
1066490 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCAT--------CA---CCGGAGA
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
1066544 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
1066609 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1066674 ACCCCCATAAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
452 ACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1066739 TGGGAACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AAATTTTTT
516 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1066803 GTGCTTGCCTACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
581 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1066867 AATTTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAAGAGAAAACGAGTCGTC
646 AA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1066932 TTGCCATGATACTTCATGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGG
710 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1066997 CATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTA
775 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1067062 CGCATCCCGTCTCTCTGGTCGACGCAGTGCCCACCCGCCTG-CC-C-GCTCATTTCATCGG
840 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCGCCCGCTGCTCGTTTCGTCGG
* ** * *** * **
1067120 TTGGCTTAGGCATACGGAGCTCATTCCTAGTCTAAGATTGGACCGGAATAAGGGTCGCAATAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * **
1067185 GGATC-AGCAACACGCAGAGGGGGA--C--CCGA-------CTTGCACATCTTGCCCCTCTGGCC
65 GGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * * *
1067238 GGCAGAGCACCCGTACACTCGTTCCGTAGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
1067303 GCATGTGGAGTTCATTCCCATTCTAAGAT-----CAGACC-------G-G-A-C-C--GATGGGC
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCACATGCTGGGC
* * * * *
1067350 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGAATCGTCGAAGAA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * * *
1067415 GCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGACTGGGGGTGTGTGCGTACATGATGTGC
324 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGC
* * * *
1067480 AATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAATTCACA
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1067545 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCAATTAAAGTGTCTGAAATG
453 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1067610 GGGACACTTTTTTCAAATGGTCA-ACAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
518 GGGACACTTTTTTCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1067674 TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCAAAAAATCCTTCCAAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
1067739 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
647 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1067804 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
1067869 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CATGGGCTTGC
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGC
* * * * * * *
1067933 GCATCCCGTCTCTCTGGTCGGCGTGGTG--CCCGCCCG-TC-C-GCTCATTTCATCAG
841 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* * * * *
1067986 TTGGCTTAGGCATACGGAGTTCATTCCCAG--TAAGATCGGACCGGACTGAGGGTTACGGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * * * *
1068049 AGATCGGCAGCACGCAAAGGGGCACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
1068114 GTTAAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
1068179 -AT-C--AG---------A--C-----T------AGACCGAGGGTTGCGATAGCACATGCTAGGC
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGC
* * * *
1068218 TCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * ** * *
1068283 CCTGACCGGCGGCATTAGGGTTCCGGAGAT-TAGGGGGCTGGGGGGGTGTGCGCACATGATATGC
324 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
* * * *
1068347 GATGGGTGCTGGTACTTGGCCCTTATATTGGACCTCTATTCCTCATCAAACCTTGAGAACTCACA
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
1068412 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTCTCAGAAATG
453 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1068477 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
518 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1068542 GCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
583 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
1068607 TTTCAAAAAATCTCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
648 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * **
1068672 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCTGA-AAAAATTTCA
713 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCA
* * * * *
1068736 TTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATGTCCATCCACGACTTGCG
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
1068801 CATCTCGTCTCTCTAGCCGACATGGTG--CCCGCCTG-CC-C-GCTCATTTCATCGG
842 CATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* * *** * ** *
1068853 TTGGCTTAGGCATACGAAGTTCATTCCTAGTATAAGATCAGATTGGATCGAGGGTTGTGGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
** * *
1068918 GGATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
1068983 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * *
1069048 CATATGGAGTTCATTCCCAATCTAAGATCAAATCAGATCAAGGGTTGCGACAGCACATGTTGGGC
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGC
* * * * * * **
1069113 TCGGTCATGTGCTGGTGCCGTATTTTTCTTTGCCAGGGCACCATC-CACGAAGCATCATCGGAGA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGCCGGAGA
* * * * *
1069177 ACTTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGGGTCGGGAGGTGTGCGCACGTGATGTGC
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1069241 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACA
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1069306 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATG
453 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1069371 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
518 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * *
1069436 GGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGACCAAAACCCCTTCCGAAAAAA
583 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
1069501 TTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
648 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1069566 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCAT
713 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1069631 TGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGGGC
778 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
1069696 ATCCCGTCTCTCTGGCTGACGTGGTG--CCCGCCCG-TC-C-GCTCGTTTCGTCGG
843 ATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* ** * *
1069747 TTGGCTTAGGCATACGAAGTTCATTCCTAGTAAAAGATCAGACCAGACCGAAGGTTGCAGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* ** * ** *
1069812 GGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTATGCATTCCCGCCCCTCTGACC
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCCGCCCCTCTGGCC
* *
1069877 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1069942 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTAGATCAAGGTTTGCG-A-CACATGCTGGGC
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCACATGCTGGGC
* * *
1070005 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-CACAGAGCATCACCGGAGA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGCCGGAGA
* * * * *
1070069 ACTTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACGTGATGTGC
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ** * *
1070134 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCAAGAACTTACA
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1070199 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
453 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1070264 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAATGTTTTTT-
518 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTG
* * ** * *
1070328 TGGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGAG-CAAAACCCCTTCCAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCCGAAAA
* * * * *
1070392 AATTTCAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
646 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1070457 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
711 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1070522 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
776 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
1070587 GCATCCCGTCTCTCTGGTCGGCGTGGTG--CCCG-CC-CAC-CTGCTCGTTTCATCAG
841 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* * ** *
1070640 TTGGCTTAGGCATACGGAGTTCATTTCTAGTATAAGATCAGACTGGACCAAGGGTTGCAGCAGCA
1 TTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * * *
1070705 GGATCGACAGCACGCAGAGGGGGACTCGATCGATGCCCGGCTTGCGCATCCCGCCCCTTTGGCCT
65 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
1070770 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGTTCATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
1070835 CATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGC
195 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGC
* *
1070900 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC---G----AT-G-C--ACCATCGTCGGAGAA
259 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * * * * *
1070954 CCTAATCGACGGCATTGGGGTTTTCGGCGATCGGGGGAGCCAGGGGGTGTGCGCCCAAGATGTGC
324 CCTGACCGGCGGCATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
1071019 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCACACCTCAAGAACTCACT
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1071084 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTACCACTAGCCATTAAAGTGTCTGAAATG
453 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1071149 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTCAGCTGAATTTTTTTAT
518 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
1071214 GCATTCCAAAAAAAATACAAGGATAACATCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAA
583 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
1071279 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATA-AAATACGAGTCGTCTT
648 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTT
*
1071343 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1071408 TTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
1071473 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGACCACCCGTCCGCTCGATCGTTTCATCGG
842 CATCCCGTCTCTCTGGCCGACGTAGTGCCC--CCGCCCGCCCGCT-GCTCGTTTCGTCGG
* *
1071533 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GATAGT
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGC
* * * * * *
1071597 AAGATCGGCAGCATGCAGATGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCC
64 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
1071662 GGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** ** *
1071727 GCATACGGAGCGCATTCCCAGTCTAAGATCAAACCAGATGGAGGGTTGCGGCAGCACATACTGGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGG
* ** * *
1071792 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
1071857 ACCTGACCGACGGCATTGGGGTTCCTGCGATCGGGGGGGCCGGCGAGGGGGTCTGCGCACATGAT
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-C--CG-GGGGGTGTGCGCACATGAT
* *
1071922 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
384 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1071987 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
449 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1072052 AATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
514 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1072117 TTATGTAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
579 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
1072182 AAAATTTTAAAAAATCCCGAACAGTGAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
644 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1072247 CTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
709 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1072311 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
774 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
1072376 GCGCATCTCGTCTCTCTGGCCGGCGTGGTG--CCCACCCG--CTC-GCTCGTTTCATCAG
839 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* * * **
1072431 TTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGGCCAGACCAAGGGTTATAGCTA-C
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGC-AGC
* * * * *
1072495 AGGATCGACAGCACACAGAGGGGGACCTGATCGATCCCCAGCTTGCGCATCCCGTCCCTCTGGCC
64 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
1072560 GGCTGAGCGCTCACACGCTCGTTTCCTGGGTT-A---A--CTTA--G-G--CA-T---A--C---
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1072605 G-A-A---A-TTCATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTACGATAGAACATGCTGGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
* * *
1072664 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGA
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * * * *
1072729 ACCTGACTAGCGGAATTGGGGTTCTGACGATCGGGGGGCCCGGGGGGGTGTGCACACATGATGTG
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
1072794 CGGTGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1072859 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1072924 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTAAATTTTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
1072989 TGCAAGGCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCAAAAACTCCTTTCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
1073054 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
647 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1073119 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
1073184 TTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCTTATCGATCCGTGGCTTGCG
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1073249 CATCCCGTCTCTCTAGCCGGCATACTGCCCGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAG
842 CATCCCGTCTCTCTGGCCGACGTAGTGCCC-CC-GCCCGCCCG--CT---GCTCGTTTCGTCGG
* * *
1073313 TTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTAGACC-GAACTGAGGGTTGCGGCAG
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATC-AGACCAG-ACCGAGGGTTGCAGCAG
* * * * * *
1073376 CATGATCGGCAGCACGCACAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCGCCTCTGGC
63 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * ** *
1073441 CAGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCTAGTCTA
128 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
1073506 AGTAGACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGCAGCACGTGCTGG
193 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGG
* * * * *
1073571 GTTCGGGCATGTGCTCGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAG
257 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
** * * *
1073636 AACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATTTG
322 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1073701 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1073766 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1073831 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
1073896 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
1073961 ATTTTAAAAAATCTCGAATCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGCCTT
647 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * * *
1074026 GCGATGAAACTTCATGCGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAACAATGGTA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1074091 TTGGCTCGCAGAAATATGAAGATGTGCCTAAAGCCACCTATCACCCTATCGATCCACGGCTTGCG
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1074156 CAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTCGG
842 CATCCCGTCTCTCTGGCCGACGTA--G--TGCCC-CC-GCCCGCCCG-CTGCTCGTTTCGTCGG
* ** * *
1074220 TTGGCTTAGGCATACGGAGTCCATTCCAAGTCTAAGATCAGACC-GAACAAAGGGTTGCGGC-CC
1 TTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGC
* * * * ** * *
1074283 AGGATCGCCAGCATGTAGAGGGGGACCTGGTCGAGCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
64 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** *
1074348 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCAATCCCAGTCTAA
129 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1074413 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
** *
1074478 CTCGGGCATGTGCTGGTGTTGCATTTTTC-T--TC---G-----T---CGGAGCATCGCTGGAGA
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
1074529 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
323 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1074594 GAAGAGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGAC
388 GATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1074658 ACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1074723 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * ** * * * **
1074788 TGCACGCCAACAAAAATACAGGGATCACAACTACAAAGTTTAGGGTTAGATCGT-TTTTTGAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAA
* * * *
1074852 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGACGTCT
646 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1074917 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGC
711 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1074982 ATTGGCATGCAGAAATATGAGGATGTGCCTAAATCCACCTACCACCCTATCAATCCATGGCTTGC
776 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1075047 ACATCCCGTCTCTCTGGCCGTCGTAGT------GCCCG-CC-C-GCTCGTTTCGTCGG
841 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
* * *
1075096 TTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCAGACTGAGGGTTG
1 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATC-AGACCAGACCGAGGGTTG
1075153 TGGCAGCACA
Statistics
Matches: 10915, Mismatches: 1208, Indels: 652
0.85 0.09 0.05
Matches are distributed among these distances:
816 193 0.02
817 15 0.00
818 1 0.00
823 1 0.00
824 2 0.00
825 1 0.00
827 5 0.00
828 1 0.00
829 2 0.00
830 1 0.00
831 2 0.00
832 2 0.00
834 1 0.00
836 1 0.00
838 1 0.00
840 1 0.00
841 3 0.00
842 206 0.02
844 31 0.00
845 5 0.00
846 21 0.00
847 233 0.02
848 3 0.00
850 2 0.00
851 2 0.00
852 1 0.00
854 7 0.00
855 2 0.00
856 2 0.00
858 3 0.00
859 244 0.02
860 44 0.00
861 5 0.00
862 13 0.00
863 26 0.00
864 44 0.00
865 204 0.02
866 57 0.01
867 508 0.05
868 105 0.01
869 599 0.05
870 510 0.05
871 10 0.00
872 135 0.01
873 9 0.00
874 9 0.00
875 75 0.01
876 62 0.01
877 7 0.00
878 101 0.01
879 5 0.00
880 8 0.00
881 4 0.00
882 145 0.01
883 3 0.00
884 38 0.00
885 465 0.04
886 3 0.00
887 4 0.00
888 42 0.00
889 48 0.00
890 7 0.00
891 132 0.01
892 1319 0.12
893 860 0.08
894 593 0.05
895 284 0.03
896 1 0.00
897 2 0.00
898 147 0.01
899 3 0.00
900 5 0.00
901 4 0.00
902 80 0.01
903 1253 0.11
904 410 0.04
905 131 0.01
906 377 0.03
907 863 0.08
908 141 0.01
909 1 0.00
910 2 0.00
911 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
TTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAG
GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCTGCTCGTTTCGTCGG
Found at i:1065136 original size:14 final size:13
Alignment explanation
Indices: 1065107--1065134 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1065097 GCATGCCAAC
1065107 AATCCTTCCGAAA
1 AATCCTTCCGAAA
1065120 AATCCTTCCGAAA
1 AATCCTTCCGAAA
1065133 AA
1 AA
1065135 ATTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (13 bp):
AATCCTTCCGAAA
Found at i:1065576 original size:26 final size:26
Alignment explanation
Indices: 1065540--1065592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1065530 GTTGACTTAG
*
1065540 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1065566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1065592 G
1 G
1065593 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1067306 original size:26 final size:26
Alignment explanation
Indices: 1067277--1067329 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1067267 GCTGACTTAG
*
1067277 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** *
1067303 GCATGTGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1067329 G
1 G
1067330 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1069051 original size:26 final size:26
Alignment explanation
Indices: 1069021--1069073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1069011 GTTGACTTAG
*
1069021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1069047 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1069073 G
1 G
1069074 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1069953 original size:26 final size:26
Alignment explanation
Indices: 1069916--1069968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1069906 GTTGACTTAG
* * *
1069916 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1069942 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1069968 G
1 G
1069969 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1070385 original size:893 final size:892
Alignment explanation
Indices: 1068152--1075132 Score: 8968
Period size: 893 Copynumber: 7.8 Consensus size: 892
1068142 GTTGACTTAG
** * * *
1068152 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACTAGACCGAGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
* * * **
1068217 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGA
* * ** * *
1068282 ACCTGACCGGCGGCATTAGGGTTCCGGAGAT-TAGGGGGCTGGGGGGGTGTGCGCACATGATATG
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
* * * **
1068346 CGATGGGTGCTGGTACTTGGCCCTTATATTGGACCTCTATTCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * *
1068411 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTCTCAGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1068476 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *
1068541 TGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAA
* * * * * *
1068606 ATTTCAAAAAATCTCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
1068671 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCTGA-AAAAATTTC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGC
* * * *
1068735 ATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATGTCCATCCACGACTTGC
581 ATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
1068800 GCATCTCGTCTCTCTAGCCGACATGGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCA
646 GCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * *** * * ** **
1068865 TACGAAGTTCATTCCTAGTATAAGATCAGATTGGATCGAGGGTTGTGGTAGCAGGATCGGTAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCA
* *
1068930 CGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
776 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
1068995 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1069047 GCATATGGAGTTCATTCCCAATCTAAGATCAAATCAGATCAAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
* * * * * * *
1069112 CTCGGTCATGTGCTGGTGCCGTATTTTTCTTTGCCAGGGCACCATCCACGAAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCC-CGGAGCATCACCGGAGA
* * * * *
1069177 ACTTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGGGTCGGGAGGTGTGCGCACGTGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1069241 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
1069306 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1069371 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* ** * *
1069436 GGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGACCAAAACCCCTTCCGAAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCGAAAAAA
* *
1069501 TTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1069566 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
1069631 TGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGGGC
583 TGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
1069696 ATCCCGTCTCTCTGGCTGACGTGGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
648 ATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * **
1069761 CGAAGTTCATTCCTAGTAAAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACG
* * * ** * *
1069826 TAGAGGGGGACCCGGTCGATCCCTGGCTTATGCATTCCCGCCCCTCTGACCGGTTGAGCGCCCGC
778 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
1069891 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
842 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1069942 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTAGATCAAGGTTTGCG-A-CACATGCTGGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGGC
* *
1070005 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCACAGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCC-CGGAGCATCACCGGAGAA
* * * * *
1070070 CTTGACCGGCGACATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACGTGATGTGCG
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** *
1070135 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCAAGAACTTACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
1070200 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
1070265 GGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAATGTTTTTT-T
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTAT
* ** * *
1070329 GGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGAGCAAAACCCCTTCCAAAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCGAAAAAA
* * * * *
1070394 TTTCAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
1070459 GCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1070524 TGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
583 TGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1070588 CATCCCGTCTCTCTGGTCGGCGTGGTGCCCGCCC-ACCTGCTCGTTTCATCAGTTGGCTTAGGCA
647 CATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTCC-GCTCGTTTCATCGGTTGGCTTAGGCA
* * * ** *
1070652 TACGGAGTTCATTTCTAGTATAAGATCAGACTGGACC-AAGGGTTGCAGCAGCAGGATCGACAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCAGTAGCAGGATCGACAGC
* * * *
1070716 ACGCAGAGGGGGACTCGATCGATGCCCGGCTTGCGCATCCCGCCCCTTTGGCCTGCTGAGCGCCC
775 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
1070781 GCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGTTCATTCCCAGTCTAA
840 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1070834 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGG
**
1070899 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGATGCACCAT--C---G--T---CGGAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCACCGGAGAA
* * * * * * * *
1070954 CCTAATCGACGGCATTGGGGTTTTCGGCGATCGGGGGAGCCAGGGGGTGTGCGCCCAAGATGTGC
130 CCTGACCGGCGGCATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1071019 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCACACCTCAAGAACTCACT
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
1071084 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTACCACTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1071149 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTCAGCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
** * * * * *
1071214 GCATTCCAAAAAAAATACAAGGATAACATCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCTTCCGAAAAAA
* * *
1071279 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATA-AAATACGAGTCGTCTT
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTT
*
1071343 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
1071408 TTGGCA-TGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 TTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1071472 ACATCCCGTCTCTCTGGCCGGCATAGTGCCCGACCACCCGTCCGCTCGATCGTTTCATCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTGGTGCCCG----CCCGTCCG--C--TCGTTTCATCGGTTGG
* * *
1071537 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GATAGTAAGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAG-TAGCAGGA
* * * * * *
1071601 TCGGCAGCATGCAGATGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
767 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
1071666 GAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
832 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** *
1071727 GCATACGGAGCGCATTCCCAGTCTAAGATCAAACCAGATGGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGG
* ** *
1071792 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGA
* * *
1071857 ACCTGACCGACGGCATTGGGGTTCCTGCGATCGGGGGGGCCGGCGAGGGGGTCTGCGCACATGAT
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-C--CG-GGGGGTGTGCGCACATGAT
*
1071922 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
1071987 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1072052 AATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
1072117 TTATGTAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
385 TTATGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAA
* * * *
1072182 AAAATTTTAAAAAATCCCGAACAGTGAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1072247 CTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1072311 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1072376 GCGCATCTCGTCTCTCTGGCCGGCGTGGTGCCCACCCG-CTCGCTCGTTTCATCAGTTGGCTTAG
644 GCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTC-CGCTCGTTTCATCGGTTGGCTTAG
* * **
1072440 GCATACTGAGTTCATTCCCAGTCTAAGATCAGGCCAGACC-AAGGGTTATAGCTA-CAGGATCGA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCAG-TAGCAGGATCGA
* * * *
1072503 CAGCACACAGAGGGGGACCTGATCGATCCCCAGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGC
771 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
1072568 GCTCACACGCTCGTTTCCTGGGTT-A---A--CTTA--G-G--CA-T---A--C---
836 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1072605 G-A-A---A-TTCATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTACGATAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
* *
1072664 CTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGA
** * * * * *
1072729 ACCTGACTAGCGGAATTGGGGTTCTGACGATCGGGGGGCCCGGGGGGGTGTGCACACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
1072794 CGGTGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
1072859 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1072924 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTAAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
1072989 TGCAAGGCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCAAAAACTCCTTTCGAAAAA
388 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAAAAA
* *
1073054 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1073119 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
1073184 TTGGCACGT-AGAAATATGAAGATGTGCCTAAATCCACCTACCACCTTATCGATCCGTGGCTTGC
582 TTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1073248 GCATCCCGTCTCTCTAGCCGGCATACTGCCCGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAG
646 GCATCCCGTCTCTCTGGCCGGC---GTG---G--TGCCCGCCCG---T-CCGCTCGTTTCATCGG
* * * * *
1073313 TTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTAGACC-GAACTGAGGGTTGCGGCAG
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAG-ACCGAAGGTTGCAGTAG
* * * * * * *
1073376 CATGATCGGCAGCACGCACAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCGCCTCTGGC
762 CAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * ** *
1073441 CAGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCTAGTCTA
827 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1073506 A
892 A
* * * ** * * *
1073507 GTAGACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGG
* * * * * *
1073572 TTCGGGCATGTGCTCGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGA
** * * *
1073637 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATTTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1073702 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
1073767 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1073832 GGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* *
1073897 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAA
* * * *
1073962 TTTTAAAAAATCTCGAATCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGCCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * * *
1074027 CGATGAAACTTCATGCGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAACAATGGTAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1074092 TGGCTCGCAGAAATATGAAGATGTGCCTAAAGCCACCTATCACCCTATCGATCCACGGCTTGCGC
583 TGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
1074157 AACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTT
648 ATCCCGTCTCTCTGGCCGGCG---T----G---G--TGCCCGCCCGTCCGCTCGTTTCATCGGTT
* * * * ***
1074222 GGCTTAGGCATACGGAGTCCATTCCAAGTCTAAGATCAGACC-GAACAAAGGGTTGC-GGCCCAG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCAGTAGCAG
* * * * * * *
1074285 GATCGCCAGCATGTAGAGGGGGACCTGGTCGAGCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
765 GATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** *
1074350 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCAATCCCAGTCTAA
830 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1074413 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGG
** *
1074478 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGTC--GG-AGCAT--C---GC-T----GGAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCACCGGAGAA
* *
1074530 CCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
1074595 AAGAGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACA
195 ATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
1074659 CCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1074724 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * ** * * ** * * **
1074789 GCACGCCAACAAAAATACAGGGATCACAACTACAAAGTTTAGGGTTAGA-TCGTTTTTTGAAAAA
389 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTC--CTTCCGAAAAA
* * * *
1074853 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGACGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1074918 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1074983 TTGGCA-TGCAGAAATATGAGGATGTGCCTAAATCCACCTACCACCCTATCAATCCATGGCTTGC
582 TTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1075047 ACATCCCGTCTCTCTGGCCGTCGTAGTGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCA
646 GCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCA
*
1075108 TAGGGAGTTCATTCCCAGTCTAAGA
711 TACGGAGTTCATTCCCAGTCTAAGA
1075133 CTGGACCAGA
Statistics
Matches: 5395, Mismatches: 575, Indels: 251
0.87 0.09 0.04
Matches are distributed among these distances:
868 1 0.00
869 346 0.06
870 118 0.02
871 2 0.00
872 133 0.02
873 3 0.00
876 51 0.01
877 1 0.00
878 11 0.00
880 6 0.00
881 4 0.00
882 142 0.03
883 5 0.00
884 31 0.01
885 462 0.09
886 5 0.00
887 3 0.00
888 3 0.00
889 7 0.00
890 6 0.00
891 6 0.00
892 703 0.13
893 873 0.16
894 591 0.11
895 318 0.06
896 2 0.00
897 5 0.00
898 144 0.03
899 5 0.00
900 2 0.00
901 2 0.00
902 7 0.00
903 20 0.00
904 29 0.01
905 1 0.00
906 335 0.06
907 852 0.16
908 142 0.03
909 1 0.00
911 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCACCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
AAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACGCAG
AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Done.