Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 99 of 120
Found at i:13601287 original size:33 final size:33
Alignment explanation
Indices: 13601209--13601338 Score: 188
Period size: 33 Copynumber: 3.9 Consensus size: 33
13601199 CTTATTAAAT
* * * *
13601209 TATATTAAATAATATTATTAAATACTATTTAAA
1 TATATTCAATAATATTATTAAATATTAATTCAA
* *
13601242 TTATATTGAATAATATTGTTAAATATTAATTCAA
1 -TATATTCAATAATATTATTAAATATTAATTCAA
*
13601276 TATATTCAATAATATTATTAAATATCAATTCAA
1 TATATTCAATAATATTATTAAATATTAATTCAA
13601309 TATATTCAATAATATTATTAAATATTAATT
1 TATATTCAATAATATTATTAAATATTAATT
13601339 TAATTAAATA
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
33 59 0.68
34 28 0.32
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (33 bp):
TATATTCAATAATATTATTAAATATTAATTCAA
Found at i:13601323 original size:23 final size:24
Alignment explanation
Indices: 13601263--13601320 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
13601253 AATATTGTTA
*
13601263 AATATTAATTCAATAT--ATTCAAT
1 AATATTAA-TAAATATCAATTCAAT
*
13601286 AATATTATTAAATATCAATTCAAT
1 AATATTAATAAATATCAATTCAAT
13601310 -ATATTCAATAA
1 AATATT-AATAA
13601321 TATTATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 6 0.21
23 12 0.41
24 11 0.38
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (24 bp):
AATATTAATAAATATCAATTCAAT
Found at i:13601565 original size:21 final size:22
Alignment explanation
Indices: 13601527--13601578 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
13601517 ACCAATTTTA
13601527 AAATATTAA-TTGAATATTATT
1 AAATATTAATTTGAATATTATT
*
13601548 AAA-ATTAATTTTAATATTATT
1 AAATATTAATTTGAATATTATT
13601569 AAATATTAAT
1 AAATATTAAT
13601579 CCATTATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 5 0.18
21 17 0.61
22 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AAATATTAATTTGAATATTATT
Found at i:13602243 original size:70 final size:70
Alignment explanation
Indices: 13602163--13602328 Score: 251
Period size: 70 Copynumber: 2.4 Consensus size: 70
13602153 TTTATCATTT
* * * * *
13602163 TTAAGCTGATTTTCTTTCCTTTTTAATTAGAGTATTTCACAATAAAAATTAATACAAAATTAACG
1 TTAAGCTGATTTTCTTTCCTTTTTAATCAGAGAATTACACAATAAAAATTAATACAAAATCAAAG
13602228 TCTCC
66 TCTCC
** *
13602233 TTAAGCTGATTTTCTTTCCTTTTTAATCAGAGAATTACACAATAAAAATTAATACAAGGTCAAAT
1 TTAAGCTGATTTTCTTTCCTTTTTAATCAGAGAATTACACAATAAAAATTAATACAAAATCAAAG
13602298 TCTCC
66 TCTCC
13602303 TTAAGCTGATTTTCTTTCCTTCTTTA
1 TTAAGCTGATTTTCTTTCCTT-TTTA
13602329 TTCACATAGC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
70 83 0.95
71 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (70 bp):
TTAAGCTGATTTTCTTTCCTTTTTAATCAGAGAATTACACAATAAAAATTAATACAAAATCAAAG
TCTCC
Found at i:13602352 original size:70 final size:69
Alignment explanation
Indices: 13602163--13602365 Score: 228
Period size: 70 Copynumber: 2.8 Consensus size: 69
13602153 TTTATCATTT
* * *
13602163 TTAAGCTGATTTTCTTTCCTTTTTAATT-AGAGTATTTCACAATAAAAATTAATACAAAATTAAC
1 TTAAGCTGATTTTCTTTCCTTTTT-ATTCAGA-TAATTCACAATAAAAATTAATACAAAATCAAA
13602227 GTCTCC
64 GTCTCC
* * ** *
13602233 TTAAGCTGATTTTCTTTCCTTTTTAATCAGAGAATTACACAATAAAAATTAATACAAGGTCAAAT
1 TTAAGCTGATTTTCTTTCCTTTTTATTCAGATAATT-CACAATAAAAATTAATACAAAATCAAAG
13602298 TCTCC
65 TCTCC
* *
13602303 TTAAGCTGATTTTCTTTCCTTCTTTATTCACATAGCTTCACAATGAAATTAAATTAATACAAA
1 TTAAGCTGATTTTCTTTCCTT-TTTATTCAGATA-ATTCACAAT--AA--AAATTAATACAAA
13602366 TCCACTCAAA
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
69 5 0.04
70 76 0.68
71 15 0.13
72 2 0.02
73 2 0.02
75 12 0.11
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (69 bp):
TTAAGCTGATTTTCTTTCCTTTTTATTCAGATAATTCACAATAAAAATTAATACAAAATCAAAGT
CTCC
Found at i:13603078 original size:2 final size:2
Alignment explanation
Indices: 13603071--13603103 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13603061 TACTCTTAAA
13603071 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13603104 AAACAATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13618129 original size:17 final size:17
Alignment explanation
Indices: 13618102--13618145 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
13618092 AAACATATTT
* *
13618102 TTTTTAAATTAATTGTAA
1 TTTTTATATT-ATTATAA
13618120 TTTTT-TATTATTATAA
1 TTTTTATATTATTATAA
13618136 TTTTTATATT
1 TTTTTATATT
13618146 TTTAAGCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 11 0.48
17 7 0.30
18 5 0.22
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTTATATTATTATAA
Found at i:13618491 original size:22 final size:23
Alignment explanation
Indices: 13618459--13618502 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13618449 TTATTTTAAT
13618459 ATTTTTAAATA-AAATAATATTTG
1 ATTTTTAAATAGAAATAA-ATTTG
13618482 ATTTTT-AATAGAAATAAATTT
1 ATTTTTAAATAGAAATAAATTT
13618503 AATGATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
ATTTTTAAATAGAAATAAATTTG
Found at i:13621899 original size:1 final size:1
Alignment explanation
Indices: 13621888--13621920 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
13621878 TATGATTGAT
*
13621888 AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13621921 CTCTTCACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:13624242 original size:2 final size:2
Alignment explanation
Indices: 13624235--13624267 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13624225 TATGTTATTT
13624235 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13624268 TAGATATCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13625512 original size:24 final size:24
Alignment explanation
Indices: 13625480--13625554 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
13625470 CTTCTTCAAC
13625480 ATCTTTTTCTTGATTGTATGATTT
1 ATCTTTTTCTTGATTGTATGATTT
*
13625504 ATCTTTTTCTTCATTGTATGATTT
1 ATCTTTTTCTTGATTGTATGATTT
* *
13625528 ACCTTTTTTTTGATTGTATGATTT
1 ATCTTTTTCTTGATTGTATGATTT
13625552 ATC
1 ATC
13625555 ATAATCTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (24 bp):
ATCTTTTTCTTGATTGTATGATTT
Found at i:13634864 original size:14 final size:14
Alignment explanation
Indices: 13634854--13634885 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
13634844 CTAAAGTTAT
13634854 TTTATTAAAGTAAC
1 TTTATTAAAGTAAC
13634868 TTTATTAAAGTAAC
1 TTTATTAAAGTAAC
13634882 TTTA
1 TTTA
13634886 AGTCAAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (14 bp):
TTTATTAAAGTAAC
Found at i:13643750 original size:23 final size:23
Alignment explanation
Indices: 13643724--13643767 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13643714 GAAATTCTTT
13643724 TGAATTTT-TAAAGTTCTTAAAAA
1 TGAATTTTATAAAGTT-TTAAAAA
*
13643747 TGAATTTTATAGAGTTTTAAA
1 TGAATTTTATAAAGTTTTAAA
13643768 TTTTACACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.45
Consensus pattern (23 bp):
TGAATTTTATAAAGTTTTAAAAA
Found at i:13648619 original size:8 final size:8
Alignment explanation
Indices: 13648606--13648634 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13648596 ATTACAGACA
13648606 AAAAAAAT
1 AAAAAAAT
13648614 AAAAAAAT
1 AAAAAAAT
13648622 AAAAAAAT
1 AAAAAAAT
13648630 AAAAA
1 AAAAA
13648635 CAAAAAGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:13652375 original size:52 final size:52
Alignment explanation
Indices: 13652297--13652402 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 52
13652287 AATCAGTTAT
* * *
13652297 ATCTAACATCAATGTATTTTGTTCTAGCATGGTATATGACATTCTTACTCAA
1 ATCTAACATCAATGTACTTTGTTCTAGCATGATACATGACATTCTTACTCAA
* * *
13652349 ATCTAACATCAATGTGCTTTGTTCTAGCATGATACATGATATTTTTACTCAA
1 ATCTAACATCAATGTACTTTGTTCTAGCATGATACATGACATTCTTACTCAA
13652401 AT
1 AT
13652403 TTAAAGCACT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (52 bp):
ATCTAACATCAATGTACTTTGTTCTAGCATGATACATGACATTCTTACTCAA
Found at i:13667628 original size:16 final size:15
Alignment explanation
Indices: 13667603--13667634 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
13667593 TCTCAGTTTC
13667603 TCGGGGAGAAAGAAG
1 TCGGGGAGAAAGAAG
13667618 TCGGAGGAGAAAGAAG
1 TCGG-GGAGAAAGAAG
13667634 T
1 T
13667635 GCGAGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.41, C:0.06, G:0.44, T:0.09
Consensus pattern (15 bp):
TCGGGGAGAAAGAAG
Found at i:13675452 original size:9 final size:9
Alignment explanation
Indices: 13675438--13675463 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13675428 AGAATCATAT
13675438 TCATTATTA
1 TCATTATTA
13675447 TCATTATTA
1 TCATTATTA
13675456 TCATTATT
1 TCATTATT
13675464 GAAAATATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.58
Consensus pattern (9 bp):
TCATTATTA
Found at i:13683558 original size:2 final size:2
Alignment explanation
Indices: 13683551--13683575 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13683541 CTACTTTGTG
13683551 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
13683576 TATCCTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13684282 original size:3 final size:3
Alignment explanation
Indices: 13684269--13684298 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
13684259 GTAATTAATT
13684269 TTA TATA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
13684299 TACGAGGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13685106 original size:17 final size:17
Alignment explanation
Indices: 13685086--13685119 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13685076 TTTTAAAATC
13685086 AAAGAAAAAAAAAAAGA
1 AAAGAAAAAAAAAAAGA
* *
13685103 AAAGAACAAAAATAAGA
1 AAAGAAAAAAAAAAAGA
13685120 GGAAAAAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAGAAAAAAAAAAAGA
Found at i:13685768 original size:2 final size:2
Alignment explanation
Indices: 13685761--13685817 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
13685751 CCTCCTGGTA
13685761 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
13685803 TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC T
13685818 TCAATTGTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:13689479 original size:42 final size:42
Alignment explanation
Indices: 13689411--13689493 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
13689401 ACATTCCCAC
* * *
13689411 CCACTCAAATCCTTGATGTCCTCATCAAGACCCACTTCACAA
1 CCACTCAAATCCTTGATGACCACATCAAGACCCACTCCACAA
** *
13689453 CCACTCAAATCCTTGATGAGGACATCAAGGCCCACTCCACA
1 CCACTCAAATCCTTGATGACCACATCAAGACCCACTCCACA
13689494 GGAATATAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.31, C:0.37, G:0.11, T:0.20
Consensus pattern (42 bp):
CCACTCAAATCCTTGATGACCACATCAAGACCCACTCCACAA
Found at i:13700582 original size:39 final size:41
Alignment explanation
Indices: 13700498--13700594 Score: 119
Period size: 39 Copynumber: 2.4 Consensus size: 41
13700488 GTAAAAGTAA
* *
13700498 TTTTTTATTAATTTTAAAATTTATAAATTTTTTAATAATAGT
1 TTTTTTATTAATTTT-AAATTTATAAATATTTTAATAATAAT
13700540 TTTTTTATT-ATTTT-AATTTATAAATAATTTTAATAA-AAT
1 TTTTTTATTAATTTTAAATTTATAAAT-ATTTTAATAATAAT
*
13700579 TTTTGTTATAAATTTT
1 TTTT-TTATTAATTTT
13700595 TATAAAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 17 0.35
40 13 0.27
41 10 0.20
42 9 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (41 bp):
TTTTTTATTAATTTTAAATTTATAAATATTTTAATAATAAT
Found at i:13712005 original size:16 final size:16
Alignment explanation
Indices: 13711984--13712024 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
13711974 TAAGTATGCG
13711984 ATAATACAAAATAAAA
1 ATAATACAAAATAAAA
*
13712000 ATAATA-TAAATAAAA
1 ATAATACAAAATAAAA
13712015 A-ATATACAAA
1 ATA-ATACAAA
13712025 TAATATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 1 0.05
15 12 0.57
16 8 0.38
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (16 bp):
ATAATACAAAATAAAA
Found at i:13712025 original size:15 final size:16
Alignment explanation
Indices: 13711984--13712027 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
13711974 TAAGTATGCG
13711984 ATAATACAAA-ATAAAA
1 ATAATACAAATA-AAAA
*
13712000 ATAATATAAATAAAAA
1 ATAATACAAATAAAAA
13712016 AT-ATACAAATAA
1 ATAATACAAATAA
13712028 TATAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.36
16 15 0.60
17 1 0.04
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAATACAAATAAAAA
Found at i:13712039 original size:24 final size:22
Alignment explanation
Indices: 13711986--13712085 Score: 67
Period size: 25 Copynumber: 4.2 Consensus size: 22
13711976 AGTATGCGAT
*
13711986 AATACAAAATAAAAATAATATA
1 AATAAAAAATAAAAATAATATA
13712008 AATAAAAAATATACAAATAATATA
1 AATAAAAAATA-A-AAATAATATA
* **
13712032 ATTTAAAAGTTTAATAAA-AAGTATA
1 A-ATAAAA-AATAA-AAATAA-TATA
*
13712057 AATAAATTTAATAAAATATAATATA
1 AATAAA--AAATAAAA-ATAATATA
13712082 AATA
1 AATA
13712086 TATAAATTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
22 10 0.17
23 1 0.02
24 19 0.32
25 26 0.43
26 4 0.07
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (22 bp):
AATAAAAAATAAAAATAATATA
Found at i:13712067 original size:22 final size:21
Alignment explanation
Indices: 13712026--13712101 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
13712016 ATATACAAAT
*
13712026 AATATAATTTAAAAGTTTAATAAA
1 AATATAATAT-AAA-TTTAAT-AA
13712050 AAGTATAA-ATAAATTTAATAA
1 AA-TATAATATAAATTTAATAA
*
13712071 AATATAATATAAATAT-ATAA
1 AATATAATATAAATTTAATAA
*
13712091 ATTATTAATAT
1 AATA-TAATAT
13712102 TTTATAATTC
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
20 12 0.26
21 17 0.37
22 6 0.13
23 3 0.07
24 3 0.07
25 5 0.11
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
AATATAATATAAATTTAATAA
Found at i:13713712 original size:27 final size:27
Alignment explanation
Indices: 13713682--13713742 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
13713672 ATTTAAAATT
*
13713682 ATAAT-TGATATATAAAATCAAGATAAA
1 ATAATATGATAAATAAAATCAA-ATAAA
* * *
13713709 ATAATATTATAAATAAAATTAAATTAA
1 ATAATATGATAAATAAAATCAAATAAA
13713736 ATAATAT
1 ATAATAT
13713743 CATATTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 16 0.55
28 13 0.45
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (27 bp):
ATAATATGATAAATAAAATCAAATAAA
Found at i:13713849 original size:20 final size:19
Alignment explanation
Indices: 13713825--13713877 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
13713815 AATTTATATA
13713825 ATTTAAATTATTAATATA-AT
1 ATTTAAATTA-TAATA-AGAT
*
13713845 TTTTAAATGTATAATAAGAT
1 ATTTAAAT-TATAATAAGAT
13713865 ATTTAAATT-TAAT
1 ATTTAAATTATAAT
13713878 TTTATGAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 4 0.14
19 2 0.07
20 21 0.72
21 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (19 bp):
ATTTAAATTATAATAAGAT
Found at i:13713919 original size:26 final size:25
Alignment explanation
Indices: 13713890--13713938 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
13713880 TATGAGTTAA
* *
13713890 AAATAATTTTTTATTTTAAAAATATT
1 AAATAATTTTATA-TTAAAAAATATT
*
13713916 AAATTATTTTATATTAAAAAATA
1 AAATAATTTTATATTAAAAAATA
13713939 ATATTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AAATAATTTTATATTAAAAAATATT
Found at i:13713932 original size:24 final size:21
Alignment explanation
Indices: 13713888--13713950 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 21
13713878 TTTATGAGTT
*
13713888 AAAAAT-AATTTTTTATTTTA
1 AAAAATAAATTTTTTATATTA
13713908 AAAATATTAAATTATTTTATATTA
1 AAAA-A-TAAATT-TTTTATATTA
13713932 AAAAATAATATTTTTTATA
1 AAAAATAA-ATTTTTTATA
13713951 ATCTTATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
20 4 0.11
21 1 0.03
22 11 0.30
23 8 0.22
24 13 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AAAAATAAATTTTTTATATTA
Found at i:13714300 original size:14 final size:14
Alignment explanation
Indices: 13714264--13714302 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
13714254 TTACAGAAAA
**
13714264 TAATTTTTAAAAAT
1 TAATTTTTTTAAAT
13714278 TAATTTTTTTAAAT
1 TAATTTTTTTAAAT
13714292 TAATTTTTTTA
1 TAATTTTTTTA
13714303 TTTGAATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TAATTTTTTTAAAT
Found at i:13714418 original size:27 final size:25
Alignment explanation
Indices: 13714379--13714437 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
13714369 TATTAATATA
13714379 ATTATT-AAAATATTAAAAATTATTT
1 ATTATTAAAAATATT-AAAATTATTT
* *
13714404 ATTATTAAAATATATTGAATTTATTT
1 ATTATTAAAA-ATATTAAAATTATTT
13714430 ATTTATTA
1 A-TTATTA
13714438 TCTTATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 6 0.21
26 12 0.41
27 11 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
ATTATTAAAAATATTAAAATTATTT
Found at i:13714472 original size:16 final size:16
Alignment explanation
Indices: 13714453--13714530 Score: 63
Period size: 16 Copynumber: 4.8 Consensus size: 16
13714443 TATTAGCATA
13714453 ATATTATAAATATATT
1 ATATTATAAATATATT
13714469 ATATTA-ATAATATATT
1 ATATTATA-AATATATT
13714485 AT-TTATTAATATAATATT
1 ATATTA-TAA-AT-ATATT
* *
13714503 AT-TTATACATAAAATT
1 ATATTATAAAT-ATATT
*
13714519 ATATTAAAAATA
1 ATATTATAAATA
13714531 CTGATAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.08
16 27 0.52
17 11 0.21
18 10 0.19
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATAAATATATT
Found at i:13714491 original size:18 final size:18
Alignment explanation
Indices: 13714461--13714508 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
13714451 TAATATTATA
13714461 AATATATTA--TATTAAT
1 AATATATTATTTATTAAT
13714477 AATATATTATTTATTAAT
1 AATATATTATTTATTAAT
13714495 -ATAATATTATTTAT
1 AAT-ATATTATTTAT
13714509 ACATAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.31
17 2 0.07
18 18 0.62
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATATATTATTTATTAAT
Found at i:13714652 original size:22 final size:23
Alignment explanation
Indices: 13714624--13714667 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
13714614 GATCTTATTT
*
13714624 TTTTTTATTGATCAAT-AAATTA
1 TTTTTTATTAATCAATCAAATTA
13714646 TTTTTTATTAATCAATCAAATT
1 TTTTTTATTAATCAATCAAATT
13714668 TTTACGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTTTTATTAATCAATCAAATTA
Found at i:13716156 original size:15 final size:17
Alignment explanation
Indices: 13716136--13716168 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
13716126 ATAAAAAGAA
13716136 TTTTTT-ATTTT-TATT
1 TTTTTTAATTTTCTATT
13716151 TTTTTTAATTTTCTATT
1 TTTTTTAATTTTCTATT
13716168 T
1 T
13716169 ACAATAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTAATTTTCTATT
Found at i:13718135 original size:23 final size:24
Alignment explanation
Indices: 13718081--13718135 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
13718071 TAAGTTTTTA
13718081 ATTTATATATTAAATTAATAATATT
1 ATTTAT-TATTAAATTAATAATATT
** * *
13718106 AACTATTATTAATTTTAT-ATATT
1 ATTTATTATTAAATTAATAATATT
13718129 ATTTATT
1 ATTTATT
13718136 TCGATAATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 10 0.42
24 10 0.42
25 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTATTATTAAATTAATAATATT
Found at i:13719017 original size:23 final size:22
Alignment explanation
Indices: 13718989--13719040 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
13718979 TATTGGATGG
*
13718989 AATAATCAATTATTATATTATTA
1 AATAATCAATTAATATATTA-TA
13719012 AATAATCAATTAATATATTATA
1 AATAATCAATTAATATATTATA
13719034 ATATAAT
1 A-ATAAT
13719041 TAAATAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 3 0.11
23 24 0.89
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
AATAATCAATTAATATATTATA
Found at i:13719048 original size:23 final size:23
Alignment explanation
Indices: 13718989--13719048 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
13718979 TATTGGATGG
* *
13718989 AATAATCAATTATTATATTATTA
1 AATAATCAAATAATATATTATTA
*
13719012 AATAATCAATTAATATATTA-TA
1 AATAATCAAATAATATATTATTA
*
13719034 ATATAATTAAATAAT
1 A-ATAATCAAATAAT
13719049 TAAACTCACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 3 0.09
23 30 0.91
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAATCAAATAATATATTATTA
Found at i:13719766 original size:25 final size:27
Alignment explanation
Indices: 13719738--13719792 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
13719728 TATATATTTA
*
13719738 ATAAATAATTTTTTTATTA-AA-TAAT
1 ATAAATAATTGTTTTATTAGAATTAAT
*
13719763 ATAAATGATTGTTTTATTAGAATTAAT
1 ATAAATAATTGTTTTATTAGAATTAAT
13719790 ATA
1 ATA
13719793 TTTTTATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (27 bp):
ATAAATAATTGTTTTATTAGAATTAAT
Found at i:13719830 original size:25 final size:27
Alignment explanation
Indices: 13719784--13719837 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
13719774 TTTTATTAGA
**
13719784 ATTAATATATTTTTATTTAAAAT-ATAT
1 ATTAATATA-TTTTATAAAAAATCATAT
13719811 ATTAATATA-TTTATAAAAAATCATAT
1 ATTAATATATTTTATAAAAAATCATAT
13719837 A
1 A
13719838 AAAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
26 5 0.21
27 9 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTAATATATTTTATAAAAAATCATAT
Found at i:13719974 original size:17 final size:17
Alignment explanation
Indices: 13719940--13719972 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
13719930 AAATATTCGT
13719940 TAAATATCAATATAAAA
1 TAAATATCAATATAAAA
13719957 TAAATAT-AATATAAAA
1 TAAATATCAATATAAAA
13719973 ATTTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAATATCAATATAAAA
Found at i:13730266 original size:21 final size:21
Alignment explanation
Indices: 13730242--13730284 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
13730232 TGGGACACTT
13730242 AACCTATGGAGATATGGTAAC
1 AACCTATGGAGATATGGTAAC
13730263 AACCTATGGAGATATGGTAAC
1 AACCTATGGAGATATGGTAAC
13730284 A
1 A
13730285 TTAATTGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (21 bp):
AACCTATGGAGATATGGTAAC
Found at i:13735190 original size:143 final size:143
Alignment explanation
Indices: 13734932--13735217 Score: 464
Period size: 143 Copynumber: 2.0 Consensus size: 143
13734922 GAAAGTAAGA
* * *
13734932 CCATCGCACCAGAGAAGGTCCATGAACTGGGGACCCAGATATGGTCCTAACCGTCAAGGAAGTTT
1 CCATCGCACCAGAGAAGGTCCATGAACTGGGAACCCAGATATGGCCCTAACCGTCAAGGAAGCTT
** * *
13734997 ACAGGGTTTCATTTGCAAATGAAAGCAAAATACCTTTACCATTGAACTAGAGAATGATGGGAACA
66 ACAGAATTGCATTTGCAAATGAAAGCAAAATACCCTTACCATTGAACTAGAGAATGATGGGAACA
* *
13735062 AGGAGGAGAGTTC
131 AAGACGAGAGTTC
* *
13735075 CCATCGCACCAGAGAAGGTCCATGAACTGGGAACCCAGATATGGCCCTAACTGTCAATGAAGCTT
1 CCATCGCACCAGAGAAGGTCCATGAACTGGGAACCCAGATATGGCCCTAACCGTCAAGGAAGCTT
*
13735140 ACAGAATTGCATTTGCAAATGAAAGCAAATTACCCTTACCATTGAACTAGAGAATGATGGGAACA
66 ACAGAATTGCATTTGCAAATGAAAGCAAAATACCCTTACCATTGAACTAGAGAATGATGGGAACA
13735205 AAGACGAGAGTTC
131 AAGACGAGAGTTC
13735218 TTGCCAAAGA
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
143 131 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (143 bp):
CCATCGCACCAGAGAAGGTCCATGAACTGGGAACCCAGATATGGCCCTAACCGTCAAGGAAGCTT
ACAGAATTGCATTTGCAAATGAAAGCAAAATACCCTTACCATTGAACTAGAGAATGATGGGAACA
AAGACGAGAGTTC
Found at i:13737670 original size:11 final size:11
Alignment explanation
Indices: 13737654--13737704 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
13737644 TCCATTAAGC
*
13737654 AATCTCTGACA
1 AATCTCTAACA
* *
13737665 AATCTCAAATA
1 AATCTCTAACA
13737676 AATCTCTAACA
1 AATCTCTAACA
*
13737687 AATCTCAAACA
1 AATCTCTAACA
13737698 AATCTCT
1 AATCTCT
13737705 TATGGGATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (11 bp):
AATCTCTAACA
Found at i:13737682 original size:22 final size:22
Alignment explanation
Indices: 13737654--13737704 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
13737644 TCCATTAAGC
* *
13737654 AATCTCTGACAAATCTCAAATA
1 AATCTCTAACAAATCTCAAACA
13737676 AATCTCTAACAAATCTCAAACA
1 AATCTCTAACAAATCTCAAACA
13737698 AATCTCT
1 AATCTCT
13737705 TATGGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (22 bp):
AATCTCTAACAAATCTCAAACA
Found at i:13738000 original size:24 final size:25
Alignment explanation
Indices: 13737944--13738005 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
13737934 CAACCATGCA
13737944 CTTTCCACATCT-GAAACCTTTAGCT
1 CTTT-CACATCTCGAAACCTTTAGCT
13737969 CTTCTCACATCTCG-AA-CTTTAAGCT
1 CTT-TCACATCTCGAAACCTTT-AGCT
13737994 CTTTCACATCTC
1 CTTTCACATCTC
13738006 TTCCACATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
24 13 0.38
25 19 0.56
26 2 0.06
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.37
Consensus pattern (25 bp):
CTTTCACATCTCGAAACCTTTAGCT
Found at i:13738707 original size:11 final size:11
Alignment explanation
Indices: 13738689--13738730 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
13738679 GCAATATCTG
13738689 ACAAATCTCAA
1 ACAAATCTCAA
* *
13738700 ATAAATCTCTA
1 ACAAATCTCAA
13738711 ACAAATCTCAA
1 ACAAATCTCAA
13738722 ACAAATCTC
1 ACAAATCTC
13738731 TTATGGGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:13738714 original size:22 final size:22
Alignment explanation
Indices: 13738689--13738731 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
13738679 GCAATATCTG
*
13738689 ACAAATCTCAAATAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
13738711 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
13738732 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:13742606 original size:101 final size:101
Alignment explanation
Indices: 13742495--13742698 Score: 399
Period size: 101 Copynumber: 2.0 Consensus size: 101
13742485 ATGATTTCTA
13742495 AAGATTGATTAATGGTTTGATTTGATTACGGTATTCAAATGACACTATATATTACAATGTTTTAA
1 AAGATTGATTAATGGTTTGATTTGATTACGGTATTCAAATGACACTATATATTACAATGTTTTAA
*
13742560 GAATTGACATGTTTTAATGTTGATTTATGATTTACG
66 GAATTGACATGTTTTAATATTGATTTATGATTTACG
13742596 AAGATTGATTAATGGTTTGATTTGATTACGGTATTCAAATGACACTATATATTACAATGTTTTAA
1 AAGATTGATTAATGGTTTGATTTGATTACGGTATTCAAATGACACTATATATTACAATGTTTTAA
13742661 GAATTGACATGTTTTAATATTGATTTATGATTTACG
66 GAATTGACATGTTTTAATATTGATTTATGATTTACG
13742697 AA
1 AA
13742699 ATATTTTACA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (101 bp):
AAGATTGATTAATGGTTTGATTTGATTACGGTATTCAAATGACACTATATATTACAATGTTTTAA
GAATTGACATGTTTTAATATTGATTTATGATTTACG
Found at i:13746387 original size:40 final size:40
Alignment explanation
Indices: 13746286--13746377 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
13746276 TTATAATTCA
* * *
13746286 AAATATCACATTAAAAATTTTTATATTTCAAGTATGAAATT
1 AAATATTACATT-ATAATTTTTATACTTCAAGTATGAAATT
** *
13746327 AAATATTTTATTATAATTTTTATACTTCAAGTGTGAAATT
1 AAATATTACATTATAATTTTTATACTTCAAGTATGAAATT
*
13746367 AATTATTACAT
1 AAATATTACAT
13746378 GTCTATTTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 33 0.79
41 9 0.21
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (40 bp):
AAATATTACATTATAATTTTTATACTTCAAGTATGAAATT
Found at i:13746890 original size:22 final size:22
Alignment explanation
Indices: 13746855--13746896 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
13746845 AATAAAAATT
13746855 TTAAATTGATAAATTAATAAAA
1 TTAAATTGATAAATTAATAAAA
13746877 TTAAATGTGA-AAATTAATAA
1 TTAAAT-TGATAAATTAATAA
13746897 TAGATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
TTAAATTGATAAATTAATAAAA
Found at i:13747052 original size:2 final size:2
Alignment explanation
Indices: 13747045--13747075 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13747035 TACATACTTA
13747045 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13747076 ATGAGATCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13748724 original size:19 final size:19
Alignment explanation
Indices: 13748702--13748743 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
13748692 GTTTTCATAC
13748702 TAAAATAATATATAT-ATTG
1 TAAAA-AATATATATAATTG
*
13748721 TAAAAATTATATATAATTG
1 TAAAAAATATATATAATTG
13748740 TAAA
1 TAAA
13748744 TAAGAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TAAAAAATATATATAATTG
Found at i:13748726 original size:20 final size:19
Alignment explanation
Indices: 13748703--13748743 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
13748693 TTTTCATACT
13748703 AAAATAATATATATATTGTA
1 AAAATAATATATA-ATTGTA
*
13748723 AAAATTATATATAATTGTA
1 AAAATAATATATAATTGTA
13748742 AA
1 AA
13748744 TAAGAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAATAATATATAATTGTA
Found at i:13752048 original size:560 final size:557
Alignment explanation
Indices: 13750957--13752085 Score: 1733
Period size: 560 Copynumber: 2.0 Consensus size: 557
13750947 CTTCCTCCAT
13750957 CAACCAAAATTAAAAGTTTAGTAATCATTAACCCAAACAGCAAAAGACACGTCAAGATTCAATTT
1 CAACCAAAATTAAAAGTTTAGTAATCATTAACCCAAACAGCAAAAGACACGTCAAGATTCAATTT
13751022 GTATTTTTTTTTTCACTTTTTAAATTTGAGTTTATATATACAATTAATTTCTCTGTGCAAGCACA
66 GTATTTTTTTTTTCACTTTTTAAATTTGAGTTTATATATACAATTAATTTCTCTGTGCAAGCACA
13751087 TGAATTTGCACAAGTTTTTAGGAAGAAAAGAGTAAACAAATGAAACAAAGAAGTAAAAAGGAACG
131 TGAATTTGCACAAGTTTTTAGGAAGAAAAGAGTAAACAAATGAAACAAAGAAGTAAAAAGGAACG
* * *
13751152 AAGCTTTTGGCAAATGCATGATTATTTTGAGGTTTTTAAGCATCAAAAGTTTTGTCATGTTTCAT
196 AAGCATTTAGCAAATGCATGATTATTTTGAGGTTTCTAAGCATCAAAAGTTTTGTCATGTTTCAT
13751217 GACGAGGTAAGCAGAGAATTATTGTAATTAAGAGACGTGAGCTTAATAATAATAATAATAATAAT
261 GACGAGGTAAGCAGAGAATTATTGTAATTAAGAGACGTGAGCTTAATAATAATAATAATAATAAT
* * * *
13751282 AAATAAGTGATTGATTTAATTAATTAGGTTTATCTTTTTTTATGAAGAATATTTGAATTTAAATT
326 AAATAAGTGATTAATTTAATTAATTAAGTTTATCTTTTTTTATAAAAAATATTTGAATTTAAATT
* * * *
13751347 TTATCGGTAATTATTTATTGAGATCATCTCGAATGCATAATTTACAATCATTTGTCTTAAGCTAT
391 TAATC-ATAATTATTTATTGAGATCATCTCGAATGCATAATTTACAATAATTTATCTTAAGCTAT
* * * *
13751412 CAAATATTACATATTTTATTTTGATTTAAAAAATTGAATAATTTATCTATCTTTAAATTTTTCTT
455 CAAATATTACATATTTTATTTTGATATAAAAAATTAAACAATTTATATATCTTTAAATTTTTCTT
* *
13751477 AAAAATAAAAAATAAAAACATTAGTTTTTGTTGTTTAAGA
520 -ATAA-AAATAATAAAAACATTAGTTTTTGTTGTTTAAGA
*
13751517 CAACCAAAATTAAAAGTTTAGTAATCATTAACCCAAACAGCAAAAGACACGTCAGGATTCAATTT
1 CAACCAAAATTAAAAGTTTAGTAATCATTAACCCAAACAGCAAAAGACACGTCAAGATTCAATTT
13751582 GTATTTTTTTTTTCACTTTTTAAATTTGAGTTTATATATACAATTAATTTCTCTGTGCAAGCACA
66 GTATTTTTTTTTTCACTTTTTAAATTTGAGTTTATATATACAATTAATTTCTCTGTGCAAGCACA
*
13751647 TGAATTTGCACAAGTTTTTAGGAAGAAAAGAGTAAACAAATGAAACAAAGAAGTAAAAAGGAATG
131 TGAATTTGCACAAGTTTTTAGGAAGAAAAGAGTAAACAAATGAAACAAAGAAGTAAAAAGGAACG
*
13751712 AAGCATTTAGCAAATGCATGATTATTTTGAGGTTTCTAAGCATCAAAAGTTTTGTCATGTTTGAT
196 AAGCATTTAGCAAATGCATGATTATTTTGAGGTTTCTAAGCATCAAAAGTTTTGTCATGTTTCAT
* *
13751777 GACGAGGTAAGTAGAGAATTATTGTAATTAAGAGATGTGAGCTTAATAATAATAATAATAATATT
261 GACGAGGTAAGCAGAGAATTATTGTAATTAAGAGACGTGAGCTTAATAATAATAATAATAATA--
* * * *
13751842 ATTATTATTA-TGATTAATTTAATAATCAATTAAGTTTATTTTTTTTTATAAAAAATTTTTGAAT
324 A-TA-AATAAGTGATTAATTTAAT--T-AATTAAGTTTATCTTTTTTTATAAAAAATATTTGAAT
* * * * * * * * **
13751906 TTGAGTTTAAAT-ATAATTATTTGTTGGGATTATCTTGAATGTATGATTTGTAATAATTTATCTT
384 TTAAATTT-AATCATAATTATTTATTGAGATCATCTCGAATGCATAATTTACAATAATTTATCTT
* * * *
13751970 AAGCTAT-AAAGTATTGCATATTTTATTTTGATATGAAATATTAAACAATTTATATATTTTTAAA
448 AAGCTATCAAA-TATTACATATTTTATTTTGATATAAAAAATTAAACAATTTATATATCTTTAAA
* *
13752034 TTTTTCTTTAAAAAAAATAATAAAAATATTAGTTTTTGTTGTTTAAGA
512 TTTTTC-TT-ATAAAAATAATAAAAACATTAGTTTTTGTTGTTTAAGA
13752082 CAAC
1 CAAC
13752086 TCGGGGAAAG
Statistics
Matches: 519, Mismatches: 40, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
560 315 0.61
562 1 0.00
563 14 0.03
564 6 0.01
565 136 0.26
566 45 0.09
567 2 0.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (557 bp):
CAACCAAAATTAAAAGTTTAGTAATCATTAACCCAAACAGCAAAAGACACGTCAAGATTCAATTT
GTATTTTTTTTTTCACTTTTTAAATTTGAGTTTATATATACAATTAATTTCTCTGTGCAAGCACA
TGAATTTGCACAAGTTTTTAGGAAGAAAAGAGTAAACAAATGAAACAAAGAAGTAAAAAGGAACG
AAGCATTTAGCAAATGCATGATTATTTTGAGGTTTCTAAGCATCAAAAGTTTTGTCATGTTTCAT
GACGAGGTAAGCAGAGAATTATTGTAATTAAGAGACGTGAGCTTAATAATAATAATAATAATAAT
AAATAAGTGATTAATTTAATTAATTAAGTTTATCTTTTTTTATAAAAAATATTTGAATTTAAATT
TAATCATAATTATTTATTGAGATCATCTCGAATGCATAATTTACAATAATTTATCTTAAGCTATC
AAATATTACATATTTTATTTTGATATAAAAAATTAAACAATTTATATATCTTTAAATTTTTCTTA
TAAAAATAATAAAAACATTAGTTTTTGTTGTTTAAGA
Found at i:13752332 original size:11 final size:10
Alignment explanation
Indices: 13752313--13752337 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13752303 GGTAGATAAA
13752313 AAAAATTTTT
1 AAAAATTTTT
13752323 AAAAATTTTT
1 AAAAATTTTT
13752333 AAAAA
1 AAAAA
13752338 AAGGCAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAAATTTTT
Found at i:13753268 original size:55 final size:55
Alignment explanation
Indices: 13753170--13753285 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
13753160 TGTATAATAT
* *
13753170 TATAAATAAATTTAAAATTTATTTTCAATGGCTTCATAAGAT-AATAACAA-CATAA
1 TATAAACAAATTTAAAATTTATTTTCAATGACTTCATAAGATAAAT-ACAATC-TAA
* * * **
13753225 TATAAACAATTTTAAAATTTATTTTTAGTGACTTCATGCGATAAATACAATCTAA
1 TATAAACAAATTTAAAATTTATTTTCAATGACTTCATAAGATAAATACAATCTAA
13753280 TATAAA
1 TATAAA
13753286 TAATACGATA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
55 48 0.92
56 4 0.08
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (55 bp):
TATAAACAAATTTAAAATTTATTTTCAATGACTTCATAAGATAAATACAATCTAA
Found at i:13769248 original size:2 final size:2
Alignment explanation
Indices: 13769241--13769298 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
13769231 CACCCCAAGA
13769241 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
13769283 AG AG AG AG AA AG AG AG
1 AG AG AG AG AG AG AG AG
13769299 CTCACCTGTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13771282 original size:21 final size:22
Alignment explanation
Indices: 13771257--13771303 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13771247 TTTGAACGAT
13771257 TTTGAT-TTGGAATC-ATTTAAA
1 TTTGATATTGG-ATCGATTTAAA
*
13771278 TTTGATATTTGATCGATTTAAA
1 TTTGATATTGGATCGATTTAAA
13771300 TTTG
1 TTTG
13771304 TATCAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (22 bp):
TTTGATATTGGATCGATTTAAA
Found at i:13778225 original size:21 final size:22
Alignment explanation
Indices: 13778200--13778246 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13778190 TTTGAACAAT
13778200 TTTGAT-TTGGAATC-ATTTAAA
1 TTTGATATTGG-ATCGATTTAAA
*
13778221 TTTGATATTTGATCGATTTAAA
1 TTTGATATTGGATCGATTTAAA
13778243 TTTG
1 TTTG
13778247 TATCAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (22 bp):
TTTGATATTGGATCGATTTAAA
Found at i:13784091 original size:11 final size:11
Alignment explanation
Indices: 13784075--13784119 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
13784065 ATAGTATGAT
13784075 AAAATAATATA
1 AAAATAATATA
13784086 AAAATAATATA
1 AAAATAATATA
*
13784097 AATAAAAATATA
1 AA-AATAATATA
* *
13784109 TAAATAGTATA
1 AAAATAATATA
13784120 GCTTAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:13785454 original size:18 final size:16
Alignment explanation
Indices: 13785431--13785470 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
13785421 TTGATACCAT
13785431 AATTAAAAATAATTATAA
1 AATTAAAAAT-A-TATAA
*
13785449 AATTAATAATATATAA
1 AATTAAAAATATATAA
13785465 AATTAA
1 AATTAA
13785471 TAAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.52
17 1 0.05
18 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTAAAAATATATAA
Found at i:13785463 original size:16 final size:15
Alignment explanation
Indices: 13785438--13785473 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
13785428 CATAATTAAA
13785438 AATAATTATAAAATT
1 AATAATTATAAAATT
13785453 AATAATATATAAAATT
1 AATAAT-TATAAAATT
13785469 AATAA
1 AATAA
13785474 AAAAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATTATAAAATT
Found at i:13785758 original size:14 final size:14
Alignment explanation
Indices: 13785739--13785768 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
13785729 TAAATACTAA
13785739 TAATAATTATTTAT
1 TAATAATTATTTAT
13785753 TAATAATTATTTAT
1 TAATAATTATTTAT
13785767 TA
1 TA
13785769 TATTTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATAATTATTTAT
Found at i:13785790 original size:23 final size:23
Alignment explanation
Indices: 13785746--13785839 Score: 66
Period size: 23 Copynumber: 3.9 Consensus size: 23
13785736 TAATAATAAT
**
13785746 TATTTATTAATAAT-TATTTATTA
1 TATTTATTAA-AATATAAATATTA
13785769 TATTTATTAAAATATAAATATTA
1 TATTTATTAAAATATAAATATTA
* *
13785792 TTTCTAACTATTAAAATATAAAATATGA
1 TAT-T---TATTAAAATAT-AAATATTA
*
13785820 T-TTTAATAAAATATTAAATA
1 TATTTATTAAAATA-TAAATA
13785840 ATTTCATTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
22 3 0.05
23 33 0.56
24 2 0.03
26 1 0.02
27 12 0.20
28 8 0.14
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (23 bp):
TATTTATTAAAATATAAATATTA
Found at i:13792252 original size:30 final size:29
Alignment explanation
Indices: 13792216--13792278 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
13792206 TTGAAAAAGA
*
13792216 TTAATGTCAT-TTTAAATTATTATAAAATAT
1 TTAATGTAATATTTAAATT-TT-TAAAATAT
*
13792246 TTAATGTAATATTTAAATTTTTAAAATTT
1 TTAATGTAATATTTAAATTTTTAAAATAT
13792275 TTAA
1 TTAA
13792279 AAATAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 11 0.37
30 11 0.37
31 8 0.27
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (29 bp):
TTAATGTAATATTTAAATTTTTAAAATAT
Found at i:13793452 original size:2 final size:2
Alignment explanation
Indices: 13793445--13793475 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13793435 TTTTATTCTT
13793445 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13793476 TTAAACTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13796096 original size:153 final size:153
Alignment explanation
Indices: 13795820--13796101 Score: 331
Period size: 153 Copynumber: 1.8 Consensus size: 153
13795810 ATGGACCGTC
* ** * * *
13795820 AAAGAAGATTCAGTTTGTGGAGAAGGCGAAGGAAAATGACATTCTGGAGAAGATTCCTAATGATA
1 AAAGAAGACTCAGTTCATGGAGAAGGCAAAGGAAAATGACATTCTGGAAAAGATTCATAATGATA
* * * * * *
13795885 ACACAAGTGATATACTTAGTGAAAGGGAAGAAACTGCAAACAACCTTTCTAACAGCAAAGTTGAC
66 ACACAAATGATACACTTAATGAAACGGAAGAAAATGCAAACAACCTTTCCAACAGCAAAGTTGAC
13795950 TCAGATAAGAGTTATGGGCTGCT
131 TCAGATAAGAGTTATGGGCTGCT
* *
13795973 AAAGAAGACTCAGTTCATGGAGAAGGCAAAGGAAAATGATATTCCT-GAAAAGATTCATAATGGT
1 AAAGAAGACTCAGTTCATGGAGAAGGCAAAGGAAAATGACATT-CTGGAAAAGATTCATAATGAT
* * *
13796037 -TCTACAAATGATACA-TGTAATGAAACTGAAGAAAATGCAAA-TACCTTTTCCAA-AGGCAAAG
65 AAC-ACAAATGATACACT-TAATGAAACGGAAGAAAATGCAAACAACC-TTTCCAACA-GCAAAG
13796098 TTGA
126 TTGA
13796102 ATTGGAGTCC
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
152 6 0.06
153 99 0.93
154 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.23
Consensus pattern (153 bp):
AAAGAAGACTCAGTTCATGGAGAAGGCAAAGGAAAATGACATTCTGGAAAAGATTCATAATGATA
ACACAAATGATACACTTAATGAAACGGAAGAAAATGCAAACAACCTTTCCAACAGCAAAGTTGAC
TCAGATAAGAGTTATGGGCTGCT
Found at i:13824500 original size:32 final size:32
Alignment explanation
Indices: 13824464--13824528 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 32
13824454 TTTATTTTCC
13824464 TTTTCATTAGTTTATA-T-ATATATATATAAATA
1 TTTTCATT--TTTATATTAATATATATATAAATA
* *
13824496 TTTTCATTTTTATATTAATTTGTATATAAATA
1 TTTTCATTTTTATATTAATATATATATAAATA
13824528 T
1 T
13824529 AAGTATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 6 0.21
31 1 0.03
32 22 0.76
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (32 bp):
TTTTCATTTTTATATTAATATATATATAAATA
Found at i:13831434 original size:25 final size:25
Alignment explanation
Indices: 13831384--13831441 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
13831374 AGGTATAATG
* * *
13831384 TTAATTTTGATTATTGTTATTTATT
1 TTAATTTTGATTATTGTGACTGATT
13831409 TTAATTTGTGATTATT-TGACTGATT
1 TTAATTT-TGATTATTGTGACTGATT
*
13831434 TAAATTTT
1 TTAATTTT
13831442 ATGAAATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.04
25 19 0.68
26 8 0.29
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (25 bp):
TTAATTTTGATTATTGTGACTGATT
Found at i:13836107 original size:16 final size:18
Alignment explanation
Indices: 13836075--13836126 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 18
13836065 TTCAGTAAGA
13836075 TTTATTTAATATAATTTT
1 TTTATTTAATATAATTTT
13836093 TTTA-TTAAT-TAATTTT
1 TTTATTTAATATAATTTT
13836109 TTTAATTATAATTATAAT
1 TTT-ATT-TAA-TATAAT
13836127 AATTATTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.34
17 6 0.21
18 5 0.17
19 3 0.10
20 1 0.03
21 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATTTAATATAATTTT
Found at i:13838593 original size:20 final size:20
Alignment explanation
Indices: 13838570--13838617 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
13838560 TGTATTAGAA
*
13838570 AATTAAAAATTTTTATATAT
1 AATTAAAAATTTTTAAATAT
* *
13838590 AATTTAATATTTTTAAATAT
1 AATTAAAAATTTTTAAATAT
*
13838610 ATTTAAAA
1 AATTAAAA
13838618 TTAAAATTAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTAAAAATTTTTAAATAT
Found at i:13839095 original size:18 final size:18
Alignment explanation
Indices: 13839074--13839117 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
13839064 CACACGAATA
*
13839074 ATAATATATAATGATT-AT
1 ATAAAATATAAT-ATTAAT
13839092 ATAAAATATAATATTAAT
1 ATAAAATATAATATTAAT
13839110 ATATAAAT
1 ATA-AAAT
13839118 TTTAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 16 0.70
19 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
ATAAAATATAATATTAAT
Found at i:13839112 original size:20 final size:20
Alignment explanation
Indices: 13839089--13839126 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13839079 ATATAATGAT
13839089 TATATAAAATATAATATTAA
1 TATATAAAATATAATATTAA
* *
13839109 TATATAAATTTTAATATT
1 TATATAAAATATAATATT
13839127 TTACCTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATATAAAATATAATATTAA
Found at i:13842714 original size:4 final size:4
Alignment explanation
Indices: 13842705--13842744 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
13842695 ATAAACCTAA
*
13842705 AAAT AAAT AAAT AAAT AAAT AGAT AAAT -AAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
13842745 TGTAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:13853887 original size:33 final size:34
Alignment explanation
Indices: 13853848--13853920 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 34
13853838 TTATATTGTC
* * *
13853848 AAAAATAAATTTTTGAGAATATAATGT-ATTTTT
1 AAAAATAAATTTATGAGAATACAATATAATTTTT
*
13853881 GAAAATAAATTTATGAGAATACAATATAATTTTT
1 AAAAATAAATTTATGAGAATACAATATAATTTTT
13853915 AAAAAT
1 AAAAAT
13853921 TTATTTTCGA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (34 bp):
AAAAATAAATTTATGAGAATACAATATAATTTTT
Found at i:13855789 original size:17 final size:18
Alignment explanation
Indices: 13855767--13855805 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
13855757 TGAGGATTGA
* *
13855767 TATTTTTGTTA-ATTTTT
1 TATTTTTGATATATTTAT
13855784 TATTTTTGATATATTTAT
1 TATTTTTGATATATTTAT
13855802 TATT
1 TATT
13855806 ATTTTAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TATTTTTGATATATTTAT
Found at i:13856093 original size:18 final size:20
Alignment explanation
Indices: 13856070--13856114 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
13856060 AACAATTTTG
*
13856070 ATTTTT-TATG-TATTTTAT
1 ATTTTTATATGTTATTATAT
*
13856088 ATTTTTATTTGTTATTATAT
1 ATTTTTATATGTTATTATAT
13856108 ATTTTTA
1 ATTTTTA
13856115 AGATTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 3 0.13
20 14 0.61
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (20 bp):
ATTTTTATATGTTATTATAT
Found at i:13856307 original size:8 final size:8
Alignment explanation
Indices: 13856294--13856351 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 8
13856284 AAAAATCTCA
13856294 TTTATCTT
1 TTTATCTT
13856302 TTTATC-T
1 TTTATCTT
13856309 TTTATTCTT
1 TTTA-TCTT
13856318 CTTT-TC-T
1 -TTTATCTT
*
13856325 TTTATTTT
1 TTTATCTT
13856333 TTTAT-TT
1 TTTATCTT
13856340 TTTAT-TT
1 TTTATCTT
13856347 TTTAT
1 TTTAT
13856352 GAAAAATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
6 3 0.07
7 21 0.48
8 16 0.36
9 1 0.02
10 3 0.07
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTATCTT
Found at i:13856325 original size:16 final size:16
Alignment explanation
Indices: 13856294--13856349 Score: 66
Period size: 15 Copynumber: 3.7 Consensus size: 16
13856284 AAAAATCTCA
13856294 TTTA-TCTTTTTATCT
1 TTTATTCTTTTTATCT
13856309 TTTATTCTTCTTT-TCT
1 TTTATTCTT-TTTATCT
*
13856325 TTTATT-TTTTTATTT
1 TTTATTCTTTTTATCT
13856340 TTTATT-TTTT
1 TTTATTCTTTT
13856350 ATGAAAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 3 0.08
15 18 0.49
16 13 0.35
17 3 0.08
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTCTTTTTATCT
Found at i:13858487 original size:21 final size:21
Alignment explanation
Indices: 13858461--13858502 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13858451 ATTATTTACG
13858461 CCAATCATTGCACAAAAGAAA
1 CCAATCATTGCACAAAAGAAA
13858482 CCAATCATTGCACAAAAGAAA
1 CCAATCATTGCACAAAAGAAA
13858503 TTAAAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.10, T:0.14
Consensus pattern (21 bp):
CCAATCATTGCACAAAAGAAA
Found at i:13859855 original size:28 final size:28
Alignment explanation
Indices: 13859823--13859878 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
13859813 GTTTTATGTC
13859823 AGGTTATTTTCATGTAAGAGTAAGGATG
1 AGGTTATTTTCATGTAAGAGTAAGGATG
*
13859851 AGGTTATTTTCATGTAAGAGTGAGGATG
1 AGGTTATTTTCATGTAAGAGTAAGGATG
13859879 TTGATTCTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (28 bp):
AGGTTATTTTCATGTAAGAGTAAGGATG
Found at i:13861198 original size:355 final size:355
Alignment explanation
Indices: 13860547--13861257 Score: 1422
Period size: 355 Copynumber: 2.0 Consensus size: 355
13860537 TGCTTCACAA
13860547 TGGGTGTGTCAATCATATTTTTCTGAGGCTCGTACAGAAGTCAGATCCATGTTTTCCACGTGGGC
1 TGGGTGTGTCAATCATATTTTTCTGAGGCTCGTACAGAAGTCAGATCCATGTTTTCCACGTGGGC
13860612 AAGTGTCTCTTTTTCACATGTTTAAAGGATTCTTTTGATGAAAAGAGTTTTGAAAACACTGTTGC
66 AAGTGTCTCTTTTTCACATGTTTAAAGGATTCTTTTGATGAAAAGAGTTTTGAAAACACTGTTGC
13860677 AAGCACAATATGCAAACTTATTTGAAATGTATACGATCATTCTTTGGCTGCTTATTTGTCGATTA
131 AAGCACAATATGCAAACTTATTTGAAATGTATACGATCATTCTTTGGCTGCTTATTTGTCGATTA
13860742 TTTTTTAGTTTGTCTTCTCATCTACCACTACCAGTGTTGGACCTAAAGCTTATGCAGTTATGGTG
196 TTTTTTAGTTTGTCTTCTCATCTACCACTACCAGTGTTGGACCTAAAGCTTATGCAGTTATGGTG
13860807 GATGACTGTTGCAAAACTTGATTCCTTTCATTTATATTATCAAATCTCCTAGTCTTGCTTCTTCT
261 GATGACTGTTGCAAAACTTGATTCCTTTCATTTATATTATCAAATCTCCTAGTCTTGCTTCTTCT
13860872 CCCCAACTTTTATATTTGAAACTCATTTTG
326 CCCCAACTTTTATATTTGAAACTCATTTTG
13860902 TGGGTGTGTCAATCATATTTTTCTGAGGCTCGTACAGAAGTCAGATCCATGTTTTCCACGTGGGC
1 TGGGTGTGTCAATCATATTTTTCTGAGGCTCGTACAGAAGTCAGATCCATGTTTTCCACGTGGGC
13860967 AAGTGTCTCTTTTTCACATGTTTAAAGGATTCTTTTGATGAAAAGAGTTTTGAAAACACTGTTGC
66 AAGTGTCTCTTTTTCACATGTTTAAAGGATTCTTTTGATGAAAAGAGTTTTGAAAACACTGTTGC
13861032 AAGCACAATATGCAAACTTATTTGAAATGTATACGATCATTCTTTGGCTGCTTATTTGTCGATTA
131 AAGCACAATATGCAAACTTATTTGAAATGTATACGATCATTCTTTGGCTGCTTATTTGTCGATTA
13861097 TTTTTTAGTTTGTCTTCTCATCTACCACTACCAGTGTTGGACCTAAAGCTTATGCAGTTATGGTG
196 TTTTTTAGTTTGTCTTCTCATCTACCACTACCAGTGTTGGACCTAAAGCTTATGCAGTTATGGTG
13861162 GATGACTGTTGCAAAACTTGATTCCTTTCATTTATATTATCAAATCTCCTAGTCTTGCTTCTTCT
261 GATGACTGTTGCAAAACTTGATTCCTTTCATTTATATTATCAAATCTCCTAGTCTTGCTTCTTCT
13861227 CCCCAACTTTTATATTTGAAACTCATTTTG
326 CCCCAACTTTTATATTTGAAACTCATTTTG
13861257 T
1 T
13861258 TGCTCAGTGT
Statistics
Matches: 356, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
355 356 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (355 bp):
TGGGTGTGTCAATCATATTTTTCTGAGGCTCGTACAGAAGTCAGATCCATGTTTTCCACGTGGGC
AAGTGTCTCTTTTTCACATGTTTAAAGGATTCTTTTGATGAAAAGAGTTTTGAAAACACTGTTGC
AAGCACAATATGCAAACTTATTTGAAATGTATACGATCATTCTTTGGCTGCTTATTTGTCGATTA
TTTTTTAGTTTGTCTTCTCATCTACCACTACCAGTGTTGGACCTAAAGCTTATGCAGTTATGGTG
GATGACTGTTGCAAAACTTGATTCCTTTCATTTATATTATCAAATCTCCTAGTCTTGCTTCTTCT
CCCCAACTTTTATATTTGAAACTCATTTTG
Found at i:13861672 original size:187 final size:187
Alignment explanation
Indices: 13861357--13861730 Score: 631
Period size: 187 Copynumber: 2.0 Consensus size: 187
13861347 AGATCATGAA
* * *
13861357 GGATTGGGGTGTGAGGGAGAGAGACATGATTATGGTTGGTACCATACCTAGGCATCTTACATGCT
1 GGATTGGGGTGCGAGGGAGAGAGACATGATCATGGTTGGTACCATACATAGGCATCTTACATGCT
* *
13861422 TGATGCAAACCATGGATTATAGATGCAGATAAGAAGAGAAAGACAAACCGAACTGAAATTAGGGC
66 CGATGCAAACCATGGAATATAGATGCAGATAAGAAGAGAAAGACAAACCGAACTGAAATTAGGGC
*
13861487 AGTAGGTTACTTAAAGCTGATAGGAATACATACAAGCAATGGCATAAACAGTGAGCT
131 AGTAGGTTACTTAAAGCGGATAGGAATACATACAAGCAATGGCATAAACAGTGAGCT
* * **
13861544 GGATTGGGGTGCGAGGGAGAGAGGCATGATCATGGTTGGTACCATACATAGGCCTCTTATGTGCT
1 GGATTGGGGTGCGAGGGAGAGAGACATGATCATGGTTGGTACCATACATAGGCATCTTACATGCT
* *
13861609 CGATGCAAACCATGGAATATAGATGCAGATAAGAAGAGAAAGACAAACTGAACTGAAATTAGGGT
66 CGATGCAAACCATGGAATATAGATGCAGATAAGAAGAGAAAGACAAACCGAACTGAAATTAGGGC
*
13861674 AGTAGGTTACTTAAAGCGGATAGGAATGCATACAAGCAATGGCATAAACAGTGAGCT
131 AGTAGGTTACTTAAAGCGGATAGGAATACATACAAGCAATGGCATAAACAGTGAGCT
13861731 TATCTTTGAA
Statistics
Matches: 174, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
187 174 1.00
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (187 bp):
GGATTGGGGTGCGAGGGAGAGAGACATGATCATGGTTGGTACCATACATAGGCATCTTACATGCT
CGATGCAAACCATGGAATATAGATGCAGATAAGAAGAGAAAGACAAACCGAACTGAAATTAGGGC
AGTAGGTTACTTAAAGCGGATAGGAATACATACAAGCAATGGCATAAACAGTGAGCT
Found at i:13864962 original size:5 final size:5
Alignment explanation
Indices: 13864952--13864976 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
13864942 AAAAACTATT
13864952 CAAAG CAAAG CAAAG CAAAG CAAAG
1 CAAAG CAAAG CAAAG CAAAG CAAAG
13864977 ATACTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.20, T:0.00
Consensus pattern (5 bp):
CAAAG
Found at i:13873970 original size:24 final size:24
Alignment explanation
Indices: 13873943--13873996 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
13873933 CGTTATATTT
13873943 CTTTGTGGCATAATTCACGTTTTG
1 CTTTGTGGCATAATTCACGTTTTG
13873967 CTTTGTGGCATAATTCACGTTTTG
1 CTTTGTGGCATAATTCACGTTTTG
13873991 CTTTGT
1 CTTTGT
13873997 CCTAACTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (24 bp):
CTTTGTGGCATAATTCACGTTTTG
Found at i:13883506 original size:27 final size:27
Alignment explanation
Indices: 13883477--13883616 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 27
13883467 CGGCGTCGAC
*
13883477 GGAGTGCCAAACGCAGGCGTCAAAGAC
1 GGAGTGCCAAACGCAGGCGTCAAAGAA
* * * * * *
13883504 GGAGTACCAAAGGCCGGAGTCGAAGAT
1 GGAGTGCCAAACGCAGGCGTCAAAGAA
* *
13883531 GGAGTTCCAAACGCCGGCGTC---GAA
1 GGAGTGCCAAACGCAGGCGTCAAAGAA
* * * *
13883555 GGATTGCCGAAGGCAGGAGT-AGAAGAA
1 GGAGTGCCAAACGCAGGCGTCA-AAGAA
* **
13883582 GGAGTGCCAAACGCTGGCGTTGAAGAA
1 GGAGTGCCAAACGCAGGCGTCAAAGAA
13883609 GGAGTGCC
1 GGAGTGCC
13883617 GAAGGCAGAA
Statistics
Matches: 86, Mismatches: 22, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
24 16 0.19
27 70 0.81
ACGTcount: A:0.31, C:0.21, G:0.37, T:0.11
Consensus pattern (27 bp):
GGAGTGCCAAACGCAGGCGTCAAAGAA
Found at i:13883574 original size:51 final size:53
Alignment explanation
Indices: 13883477--13883624 Score: 156
Period size: 51 Copynumber: 2.8 Consensus size: 53
13883467 CGGCGTCGAC
* * * * * * * *
13883477 GGAGTGCCAAACGCAGGCGTCAAAGACGGAGTACCAAAGGCCGGAGTCGAAGAT
1 GGAGTGCCAAACGCCGGCGT-TAAGAAGGAGTGCCGAAGGCAGGAGTAGAAGAA
* * *
13883531 GGAGTTCCAAACGCCGGCG-T-CGAAGGATTGCCGAAGGCAGGAGTAGAAGAA
1 GGAGTGCCAAACGCCGGCGTTAAGAAGGAGTGCCGAAGGCAGGAGTAGAAGAA
*
13883582 GGAGTGCCAAACGCTGGCGTTGAAGAAGGAGTGCCGAAGGCAG
1 GGAGTGCCAAACGCCGGCGTT-AAGAAGGAGTGCCGAAGGCAG
13883625 AAGAGGAACC
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
51 40 0.53
52 1 0.01
54 35 0.46
ACGTcount: A:0.31, C:0.20, G:0.38, T:0.11
Consensus pattern (53 bp):
GGAGTGCCAAACGCCGGCGTTAAGAAGGAGTGCCGAAGGCAGGAGTAGAAGAA
Found at i:13883607 original size:78 final size:78
Alignment explanation
Indices: 13883467--13883613 Score: 170
Period size: 78 Copynumber: 1.9 Consensus size: 78
13883457 TGGCGAAAGA
* * * * *
13883467 CGGCGTCGACGGAGTGCCAAACGCAGGCGTCAAAGACGGAGTACCAAAGGCCGGAGTCGAAGATG
1 CGGCGTCGAAGGAGTGCCAAACGCAGGAGTCAAAGAAGGAGTACCAAACGCCGGAGTCGAAGAAG
13883532 GAGTTCCAAACGC
66 GAGTTCCAAACGC
* * * * * * *
13883545 CGGCGTCGAAGGATTGCCGAAGGCAGGAGT-AGAAGAAGGAGTGCCAAACGCTGGCGTTGAAGAA
1 CGGCGTCGAAGGAGTGCCAAACGCAGGAGTCA-AAGAAGGAGTACCAAACGCCGGAGTCGAAGAA
13883609 GGAGT
65 GGAGT
13883614 GCCGAAGGCA
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
77 1 0.02
78 55 0.98
ACGTcount: A:0.30, C:0.21, G:0.37, T:0.12
Consensus pattern (78 bp):
CGGCGTCGAAGGAGTGCCAAACGCAGGAGTCAAAGAAGGAGTACCAAACGCCGGAGTCGAAGAAG
GAGTTCCAAACGC
Found at i:13884421 original size:13 final size:13
Alignment explanation
Indices: 13884403--13884439 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
13884393 AATATTAAAT
13884403 AATTACATTTTTA
1 AATTACATTTTTA
13884416 AATTACATTTTTA
1 AATTACATTTTTA
*
13884429 AA-CACATTTTT
1 AATTACATTTTT
13884440 TCAAATTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 8 0.35
13 15 0.65
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (13 bp):
AATTACATTTTTA
Found at i:13885010 original size:20 final size:21
Alignment explanation
Indices: 13884961--13885010 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
13884951 ATTTTTCTTA
*
13884961 TATAATATCAAAAATAATAAT
1 TATAATATTAAAAATAATAAT
* *
13884982 T-TAAAATTAACAATAAT-AT
1 TATAATATTAAAAATAATAAT
13885001 TATAATATTA
1 TATAATATTA
13885011 CATTAAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 3 0.12
20 20 0.83
21 1 0.04
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
TATAATATTAAAAATAATAAT
Found at i:13889261 original size:14 final size:15
Alignment explanation
Indices: 13889225--13889266 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
13889215 TTATGATTAA
*
13889225 AAATTTTTAAT-AAT
1 AAATTTTTATTAAAT
13889239 AAATTTTTATTAAAT
1 AAATTTTTATTAAAT
13889254 AAA-TTTTATTAAA
1 AAATTTTTATTAAA
13889267 ATTAATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 20 0.77
15 6 0.23
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATTTTTATTAAAT
Found at i:13889268 original size:15 final size:16
Alignment explanation
Indices: 13889231--13889268 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
13889221 TTAAAAATTT
13889231 TTAATAATAAATTTTTA
1 TTAA-AATAAATTTTTA
13889248 TT-AAATAAA-TTTTA
1 TTAAAATAAATTTTTA
13889262 TTAAAAT
1 TTAAAAT
13889269 TAATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.35
15 10 0.50
16 1 0.05
17 2 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAATAAATTTTTA
Found at i:13891089 original size:12 final size:12
Alignment explanation
Indices: 13891072--13891099 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13891062 TGAATTAATT
13891072 TAATAAAAACAA
1 TAATAAAAACAA
13891084 TAATAAAAACAA
1 TAATAAAAACAA
13891096 TAAT
1 TAAT
13891100 TTTTTGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (12 bp):
TAATAAAAACAA
Found at i:13891747 original size:28 final size:28
Alignment explanation
Indices: 13891683--13891747 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
13891673 TAAAAAAATA
**
13891683 AAAAAAATTTAATTCTAATTTTTTATTT
1 AAAAAAATTTAAAACTAATTTTTTATTT
* *
13891711 -ATAAGATTTAAAACTCAA-TTTTTATTT
1 AAAAAAATTTAAAACT-AATTTTTTATTT
13891738 AAAAAAATTT
1 AAAAAAATTT
13891748 GAACCACTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (28 bp):
AAAAAAATTTAAAACTAATTTTTTATTT
Found at i:13891922 original size:2 final size:2
Alignment explanation
Indices: 13891915--13891950 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
13891905 CTAGAAAGTT
13891915 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13891951 GTCTAATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13892149 original size:23 final size:22
Alignment explanation
Indices: 13892115--13892160 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
13892105 TTATTCGCTT
*
13892115 ATTAAATCTATAATTAAATTTA
1 ATTAAATCTATAAATAAATTTA
* *
13892137 ATTAATTCATATAAATACATTTA
1 ATTAAATC-TATAAATAAATTTA
13892160 A
1 A
13892161 AAATAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAAATCTATAAATAAATTTA
Found at i:13892302 original size:29 final size:29
Alignment explanation
Indices: 13892261--13892344 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 29
13892251 ATGATTCTTA
*
13892261 AATTATAATAAAATATT-TAATATGATATTTG
1 AATTAT-A-AAAAT-TTATAATATAATATTTG
* *
13892292 AATTTTAAAAATTTATAATATAATTTTTG
1 AATTATAAAAATTTATAATATAATATTTG
13892321 AATTAT--AAATTTATTAAT-TAATAT
1 AATTATAAAAATTTA-TAATATAATAT
13892345 GATATTTAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
27 12 0.26
28 6 0.13
29 22 0.48
30 1 0.02
31 5 0.11
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
AATTATAAAAATTTATAATATAATATTTG
Found at i:13894983 original size:32 final size:31
Alignment explanation
Indices: 13894917--13894984 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 31
13894907 ATAAAAAAAA
*
13894917 AATTTATATTTTTAAAATAAAATTTTTTGATG
1 AATTTATATTTTTAAAATAAAATTTATT-ATG
13894949 AATTTATTATATTTTATAAATAAAA-TTATT-TG
1 AATTTA-TAT-TTTTA-AAATAAAATTTATTATG
13894981 AATT
1 AATT
13894985 GATTCAAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 12 0.38
33 3 0.09
34 9 0.28
35 8 0.25
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (31 bp):
AATTTATATTTTTAAAATAAAATTTATTATG
Found at i:13895288 original size:18 final size:19
Alignment explanation
Indices: 13895258--13895304 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
13895248 CATTTGAATC
13895258 CTTAATCTTTTT-AAAATGA
1 CTTAAT-TTTTTAAAAATGA
13895277 CTTAATTTTTTAAAAATGA
1 CTTAATTTTTTAAAAATGA
*
13895296 CTTCATTTT
1 CTTAATTTT
13895305 AATTTGGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.51
Consensus pattern (19 bp):
CTTAATTTTTTAAAAATGA
Found at i:13896211 original size:14 final size:14
Alignment explanation
Indices: 13896192--13896226 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
13896182 AGAAGTGTGT
*
13896192 TTTATTTTTGATAA
1 TTTATTTTTGAAAA
13896206 TTTATTTTTGAAAA
1 TTTATTTTTGAAAA
13896220 TTATATT
1 TT-TATT
13896227 ATTTTCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (14 bp):
TTTATTTTTGAAAA
Found at i:13907682 original size:16 final size:16
Alignment explanation
Indices: 13907661--13907692 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13907651 ATTTTGAAAT
13907661 AAATAAAAATAATAAA
1 AAATAAAAATAATAAA
*
13907677 AAATAATAATAATAAA
1 AAATAAAAATAATAAA
13907693 GATTTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAATAAAAATAATAAA
Found at i:13919176 original size:15 final size:15
Alignment explanation
Indices: 13919156--13919186 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13919146 TGATTTATAT
13919156 AAAAAAAAAAAAAGA
1 AAAAAAAAAAAAAGA
*
13919171 AAAAAAAAGAAAAGA
1 AAAAAAAAAAAAAGA
13919186 A
1 A
13919187 GAAGAAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAGA
Found at i:13919183 original size:18 final size:17
Alignment explanation
Indices: 13919156--13919189 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13919146 TGATTTATAT
13919156 AAAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAAGAAA
*
13919173 AAAAAAGAAAAGAAGAA
1 AAAAAA-AAAAAAAGAA
13919190 GAAGAAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAGAAA
Found at i:13929404 original size:28 final size:30
Alignment explanation
Indices: 13929373--13929442 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 30
13929363 TATTAACAAA
13929373 TTTATAATTTAAATATTATATT-AAT-TTT
1 TTTATAATTTAAATATTATATTAAATATTT
* *
13929401 TTTAAAATTTAAATGTTATATTAAATATTT
1 TTTATAATTTAAATATTATATTAAATATTT
*
13929431 TACTATAATTTA
1 T-TTATAATTTA
13929443 TAAGCTATTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.57
29 3 0.09
30 4 0.11
31 8 0.23
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (30 bp):
TTTATAATTTAAATATTATATTAAATATTT
Found at i:13929907 original size:12 final size:12
Alignment explanation
Indices: 13929890--13929940 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
13929880 GTAATTTTTA
13929890 TATTTTTTATAT
1 TATTTTTTATAT
13929902 TATTTTTTA-AT
1 TATTTTTTATAT
*
13929913 CATATTTTTATAT
1 TAT-TTTTTATAT
*
13929926 TATATTTTATAT
1 TATTTTTTATAT
13929938 TAT
1 TAT
13929941 CAAGTGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 4 0.12
12 26 0.76
13 4 0.12
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (12 bp):
TATTTTTTATAT
Found at i:13935149 original size:3 final size:3
Alignment explanation
Indices: 13935141--13935165 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13935131 GGGATAGCTT
13935141 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
13935166 AAAACTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13935868 original size:2 final size:2
Alignment explanation
Indices: 13935863--13935901 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
13935853 ATTATATAGT
13935863 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13935902 ACTGACACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:13942383 original size:19 final size:18
Alignment explanation
Indices: 13942356--13942394 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
13942346 TAACTTTCCA
* *
13942356 TTTTTTCCTTTCTTCACT
1 TTTTTTCCTTCCTCCACT
13942374 TTTTTCTCCTTCCTCCACT
1 TTTTT-TCCTTCCTCCACT
13942393 TT
1 TT
13942395 CTTGCGTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTTCCTTCCTCCACT
Found at i:13950279 original size:58 final size:57
Alignment explanation
Indices: 13950206--13950399 Score: 268
Period size: 58 Copynumber: 3.4 Consensus size: 57
13950196 TTTAAATTTT
* * *
13950206 TTTTTTATTTTAGAAAAATTAATAATTCAATTTTTCCTTAAAATATTTTTTTGAAATA
1 TTTTTTA-TTTAAAAAAATTAATACTTCAATTTTTTCTTAAAATATTTTTTTGAAATA
* *
13950264 TTTTTTATTTAAGAAAAATTAATACTTCAATTTTTTCTAAAAATATTTTTCTGAAATA
1 TTTTTTATTTAA-AAAAATTAATACTTCAATTTTTTCTTAAAATATTTTTTTGAAATA
* * *
13950322 TTATTTTATTTAAAAAAATTGATGCTTCAATTTTTTCTT-AAATA-TTTGTTGAAATA
1 TT-TTTTATTTAAAAAAATTAATACTTCAATTTTTTCTTAAAATATTTTTTTGAAATA
13950378 TTTTTTA-TTAAAAAAATTAATA
1 TTTTTTATTTAAAAAAATTAATA
13950400 TTCCAAAATT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
54 13 0.11
55 5 0.04
56 12 0.10
57 9 0.07
58 73 0.60
59 10 0.08
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (57 bp):
TTTTTTATTTAAAAAAATTAATACTTCAATTTTTTCTTAAAATATTTTTTTGAAATA
Found at i:13950593 original size:34 final size:34
Alignment explanation
Indices: 13950548--13950615 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
13950538 GCTTAGATTG
* *
13950548 TCGGCTATAGACTCAGGATCGGCTTAGAAGCTCT
1 TCGGCTATAGACTCAAGATCGGCATAGAAGCTCT
*
13950582 TCGGCTCTAGACTCAAGATCGGCATAGAAGCTCT
1 TCGGCTATAGACTCAAGATCGGCATAGAAGCTCT
13950616 GTGACTTGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (34 bp):
TCGGCTATAGACTCAAGATCGGCATAGAAGCTCT
Found at i:13958052 original size:10 final size:10
Alignment explanation
Indices: 13958039--13958072 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
13958029 TTAATATTCA
13958039 TTTATATTTG
1 TTTATATTTG
*
13958049 TTTATATTCG
1 TTTATATTTG
13958059 TTTATATTTG
1 TTTATATTTG
13958069 TTTA
1 TTTA
13958073 AGGTTTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.68
Consensus pattern (10 bp):
TTTATATTTG
Found at i:13958057 original size:20 final size:20
Alignment explanation
Indices: 13958032--13958072 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
13958022 TCCTATTTTA
13958032 ATATTCATTTATATTTGTTT
1 ATATTCATTTATATTTGTTT
*
13958052 ATATTCGTTTATATTTGTTT
1 ATATTCATTTATATTTGTTT
13958072 A
1 A
13958073 AGGTTTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.63
Consensus pattern (20 bp):
ATATTCATTTATATTTGTTT
Found at i:13958403 original size:24 final size:24
Alignment explanation
Indices: 13958376--13958426 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
13958366 GTGACATGAT
13958376 AGATGTCCTTGTAAAACATGAAAA
1 AGATGTCCTTGTAAAACATGAAAA
13958400 AGATGTCCTTGTAAAACATGAAAA
1 AGATGTCCTTGTAAAACATGAAAA
13958424 AGA
1 AGA
13958427 AATCTAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (24 bp):
AGATGTCCTTGTAAAACATGAAAA
Found at i:13964729 original size:57 final size:57
Alignment explanation
Indices: 13964550--13965296 Score: 794
Period size: 57 Copynumber: 12.7 Consensus size: 57
13964540 TTGTGTAGGA
* *
13964550 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTACTTT-TAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTA-TTTCTAAGG
* * *
13964608 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
13964664 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* *
13964721 AAAATTGATACTTTCAACTTTTTCCTCAAAAATATTTTTTTTTTGAAACTTTGA--T-T-AGG
1 AAAATTGATACTTTCAAC-TTTTCCCCAAAAATA---TTTTTTGGAAA-TTT-ATTTCTAAGG
** * *
13964780 -AAATTGATAC-TTCAAACTTTTCCAAAAAAATCTTTTTTTTTGAAAATTTATTT-TAAGG
1 AAAATTGATACTTTC-AACTTTTCCCCAAAAA---TATTTTTTGGAAATTTATTTCTAAGG
* *
13964838 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTCTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
** * * *
13964895 AAAATTGATACTTTCAACTTTTCCTAAAAAATCTTTTTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA------TATTTTTTGGAAATTTATTTCTAAGG
*
13964958 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAGTTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* * * *
13965015 AAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTTTGAAACTTTGATTTCCAAGG
1 AAAATTGATACTTTCAACTTTTCC-CCAAAAA-TATTTTTTGGAAA-TTT-ATTTCTAAGG
* * * * *
13965076 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTTTTTGAAAATTTATTTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA--------TATTTTTTGGAAATTTATTTCTAAGG
* *
13965141 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* * * *
13965198 AAAATTGATACTTTCAACTTTTTCTCAAAAATTTTTTTTTTGAAACTTTGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAA-TTT-ATTTCT-AAGG
* *
13965258 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
13965297 TTTGGAATTT
Statistics
Matches: 598, Mismatches: 52, Indels: 77
0.82 0.07 0.11
Matches are distributed among these distances:
55 4 0.01
56 70 0.12
57 197 0.33
58 78 0.13
59 49 0.08
60 49 0.08
61 44 0.07
62 3 0.01
63 52 0.09
65 37 0.06
66 3 0.01
67 12 0.02
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
Found at i:13965046 original size:28 final size:28
Alignment explanation
Indices: 13965015--13965106 Score: 69
Period size: 28 Copynumber: 3.1 Consensus size: 28
13965005 ATTTCTAAGG
13965015 AAAATTGATACTTTCAACTTTTCCTCAA
1 AAAATTGATACTTTCAACTTTTCCTCAA
** ** * *
13965043 AAAATTTTTTTTTTGAAACTTTGAT-TTCCAA
1 AAAATTGATACTTT-CAACTTT--TCCT-CAA
13965074 GGAAAATTGATACTTTCAACTTTTCCTCAA
1 --AAAATTGATACTTTCAACTTTTCCTCAA
13965104 AAA
1 AAA
13965107 CCTTTTTTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 14
0.63 0.17 0.20
Matches are distributed among these distances:
28 13 0.29
29 6 0.13
30 5 0.11
31 5 0.11
32 6 0.13
33 10 0.22
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (28 bp):
AAAATTGATACTTTCAACTTTTCCTCAA
Found at i:13965171 original size:27 final size:27
Alignment explanation
Indices: 13965141--13965230 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
13965131 ATTTTTAAAG
13965141 AAAATTGATACTTTCAACTTTTTCTCA
1 AAAATTGATACTTTCAACTTTTTCTCA
** * * *
13965168 AAAA-T-ATTTTTTGGAAATTTATTTCTAA
1 AAAATTGATACTTT--CAACTT-TTTCTCA
13965196 GGAAAATTGATACTTTCAACTTTTTCTCA
1 --AAAATTGATACTTTCAACTTTTTCTCA
13965225 AAAATT
1 AAAATT
13965231 TTTTTTTTGA
Statistics
Matches: 46, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 14 0.30
28 6 0.13
29 6 0.13
30 8 0.17
31 1 0.02
32 5 0.11
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTTCTCA
Found at i:13965323 original size:183 final size:182
Alignment explanation
Indices: 13964600--13965328 Score: 823
Period size: 183 Copynumber: 4.1 Consensus size: 182
13964590 GAAAATTTAC
* * * *
13964600 TTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAATTTATTTTTAAGA
1 TTTTAAAGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* * *
13964664 AAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAA-TTT-A-TTTCTAAGGAAAA
66 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTGATTTTC-AAGGAAAA
* *
13964725 TTGATACTTTCAACTTTTTCCTCAAAAA-TATTTTTTTTTTGAA------ACTTT
130 TTGATACTTTCAAC-TTTTCCTAAAAAACT-TTTTTTTTTTGAATTTTTTATTTT
** * ** * *
13964773 GATT--AGGAAATTGATAC-TTCAAACTTTTCCAAAAAAATCTTTTTTTTTGAAAATTTATTT-T
1 TTTTAAAGAAAATTGATACTTTC-AACTTTTCCCCAAAAA---TATTTTTTGGAAATTTATTTCT
* * *
13964834 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTGGAAA-TTT-A-TTTCTAAGA
62 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTGATTTTC-AAGG
**
13964895 AAAATTGATACTTTCAACTTTTCCTAAAAAATCTTTTTTTTTTTTGAA-AATTTA---T
126 AAAATTGATACTTTCAACTTTTCCTAAAAAA-C-TTTTTTTTTTTGAATTTTTTATTTT
* *
13964950 TTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAGTTTATTTCTAAGG
1 TTTTAAAGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
*
13965015 AAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTTTGAAACTTTGATTTCCAAGGAAAA
66 AAAATTGATACTTTCAACTTTTCCTC-AAAAATTTTTTTTTTGAAACTTTGATTTTCAAGGAAAA
* ***
13965080 TTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTT---TTTGAAAATTTAT
130 TTGATACTTTCAACTTTTCCT-AAAAAACTTTTTTTTTTTGAATTT-TTTATTT-T
* *
13965133 TTTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 TTTTAAAGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
*
13965198 AAAATTGATACTTTCAACTTTTTCTCAAAAATTTTTTTTTTGAAACTTTGATTTTCAAGGAAAAT
66 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTGATTTTCAAGGAAAAT
13965263 TGATACTTTCAACTTTTCCCT-AAAAA-TTTTTTTTTTTGGAATTTTTTATTTT
131 TGATACTTTCAACTTTT-CCTAAAAAACTTTTTTTTTTT-GAATTTTTTATTTT
13965315 TATTTAAAGAAAAT
1 T-TTTAAAGAAAAT
13965329 AGAATAATAA
Statistics
Matches: 480, Mismatches: 41, Indels: 60
0.83 0.07 0.10
Matches are distributed among these distances:
170 3 0.01
171 25 0.05
173 14 0.03
174 84 0.17
175 23 0.05
176 18 0.04
177 34 0.07
178 5 0.01
179 37 0.08
180 29 0.06
181 34 0.07
182 65 0.14
183 106 0.22
184 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.47
Consensus pattern (182 bp):
TTTTAAAGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTGATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCTAAAAAACTTTTTTTTTTTGAATTTTTTATTTT
Done.