Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019167978.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 44993
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:1380 original size:21 final size:20

Alignment explanation


    Indices: 1338--1380  Score: 52
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       1328 TGAACTTTTA

                             *  
       1338 GAAAAAGAAAATTTTGATTT
          1 GAAAAAGAAAATTTTGAATT

                                  
       1358 GAAAAAG-AAATTTGATGAATT
          1 GAAAAAGAAAATTT--TGAATT

              
       1379 GA
          1 GA

       1381 TGAATGAAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  19    6  0.30
  20    7  0.35
  21    7  0.35

ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30


Consensus pattern (20 bp):   
GAAAAAGAAAATTTTGAATT

Found at i:12151 original size:15 final size:15

Alignment explanation


    Indices: 12131--12160  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      12121 CTCACCTTTT

                     *     
      12131 GATCTGTAACCATCA
          1 GATCTGTAAACATCA

                           
      12146 GATCTGTAAACATCA
          1 GATCTGTAAACATCA

      12161 AGCTCTTTGG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27


Consensus pattern (15 bp):   
GATCTGTAAACATCA

Found at i:30847 original size:24 final size:24

Alignment explanation


    Indices: 30815--30874  Score: 66
    Period size: 24  Copynumber: 2.5  Consensus size: 24

      30805 GGGCATTTAT

                *                   
      30815 GACCGAGGTGTGAATGCATGGTCA
          1 GACCTAGGTGTGAATGCATGGTCA

             *        * **          
      30839 GGCCTAGGTGGGGGTGCATGGTCA
          1 GACCTAGGTGTGAATGCATGGTCA

            *           
      30863 TACCTAGGTGTG
          1 GACCTAGGTGTG

      30875 GGCCCACTTG


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.18, C:0.17, G:0.42, T:0.23


Consensus pattern (24 bp):   
GACCTAGGTGTGAATGCATGGTCA

Found at i:44284 original size:397 final size:398

Alignment explanation


    Indices: 43504--44298  Score: 1049
    Period size: 397  Copynumber: 2.0  Consensus size: 398

      43494 GGGTCACGAG

                       * * *                                  *  *           
      43504 GCATGATTGAGTTTTGACTCATAGCCCCTAAAGACATAAGATTGATGAGGTATGGCAAGACATCT
          1 GCATGATTGAGGTCTAACTCATAGCCCCTAAAGACATAAGATTGATGAGGGATAGCAAGACATCT

             *      *       * *         *                  *             *   
      43569 GGTTTCCATTGATTTCGGTATACGGCATCGGATCCTAATTGCACCCCTAAGGTATGATGACTACT
         66 GATTTCCAATGATTTCAGCATACGGCATAGGATCCTAATTGCACCCCCAAGGTATGATGACCACT

            *                    *      *        *             *       *     
      43634 TAGAGGTAGATTAAAATGGATGATGGGTTAATAGTTTGATGCATCAAGCTTGGAGCCTGCCAACA
        131 AAGAGGTAGATTAAAATGGATAATGGGTCAATAGTTTAATGCATCAAGCTTAGAGCCTGACAACA

                           *           *                                     
      43699 TGCACAACCATAGCATCACTCTTATGCGTATTACTACAAGTGGTAGCATCCACACACACTGGTAA
        196 TGCACAACCATAGCACCACTCTTATGCCTATTACTACAAGTGGTAGCATCCACACACACTGGTAA

                *      * ***      *   *                  **                  
      43764 ATAACCCACCCTATTGAGTATTTGACGAGCAAGTAGATGAAACAATGTATGAGGCCATGCAACAA
        261 ATAAACCACCCAAACAAGTATTCGACAAGCAAGTAGATGAAACAACATATGAGGCCATGCAACAA

              *   *                                     *               *    
      43829 CTGCTTGGCATGGGAAAAACACAAGCAATGTCCATGAGACTACCTTTACCATCCAATAGGTAACA
        326 CTACTTAGCATGGGAAAAACACAAGCAATGTCCATGAGACTACCCTTACCATCCAATAGGCAACA

                    
      43894 ATGGCATA
        391 ATGGCATA

                                *      *   *                                 
      43902 GCATGATTGAGGTCTAACTCGTAGCCCTTAAGGACATAAGATTGATGAGGGATAGCAAGACAT-T
          1 GCATGATTGAGGTCTAACTCATAGCCCCTAAAGACATAAGATTGATGAGGGATAGCAAGACATCT

                   *                                                         
      43966 CGATTTCTAATGATTTCAGCATGA-GGCATAGGATCCTAATTGCACCCCCAAGGTATGATGACCA
         66 -GATTTCCAATGATTTCAGCAT-ACGGCATAGGATCCTAATTGCACCCCCAAGGTATGATGACCA

                           *                                                 
      44030 CATAAG-GGTAGATTGAAATGGATAATGGGTCAATAGTTTAATGCATCAAGCTTAGAGCCT-ACA
        129 C-TAAGAGGTAGATTAAAATGGATAATGGGTCAATAGTTTAATGCATCAAGCTTAGAGCCTGACA

                        *                                        * **    * * 
      44093 ACATGCACAACCGTAGCACCACTCTTATGCCTATTACTACAAGTGGTAGCATCTATGCACATTTG
        193 ACATGCACAACCATAGCACCACTCTTATGCCTATTACTACAAGTGGTAGCATCCACACACACTGG

             **                 *            *                             * 
      44158 TCTATAAACCACCCAAACAATTATTCGACAAGCGAGTAGATGAAACAACATATGAGGCCATGCCA
        258 TAAATAAACCACCCAAACAAGTATTCGACAAGCAAGTAGATGAAACAACATATGAGGCCATGCAA

                  *       *   *                               *              
      44223 CAACTATTTAGCATTGGAGAAACACAAGCAATGTCCATGAGACTACCCTTGCCATCCAATAGGCA
        323 CAACTACTTAGCATGGGAAAAACACAAGCAATGTCCATGAGACTACCCTTACCATCCAATAGGCA

             *         
      44288 ATAATGGCATA
        388 ACAATGGCATA

      44299 CACCCCCAAT


Statistics
Matches: 340,  Mismatches: 54, Indels: 7
        0.85            0.13        0.02

Matches are distributed among these distances:
 397  178  0.52
 398  158  0.46
 399    4  0.01

ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25


Consensus pattern (398 bp):   
GCATGATTGAGGTCTAACTCATAGCCCCTAAAGACATAAGATTGATGAGGGATAGCAAGACATCT
GATTTCCAATGATTTCAGCATACGGCATAGGATCCTAATTGCACCCCCAAGGTATGATGACCACT
AAGAGGTAGATTAAAATGGATAATGGGTCAATAGTTTAATGCATCAAGCTTAGAGCCTGACAACA
TGCACAACCATAGCACCACTCTTATGCCTATTACTACAAGTGGTAGCATCCACACACACTGGTAA
ATAAACCACCCAAACAAGTATTCGACAAGCAAGTAGATGAAACAACATATGAGGCCATGCAACAA
CTACTTAGCATGGGAAAAACACAAGCAATGTCCATGAGACTACCCTTACCATCCAATAGGCAACA
ATGGCATA
Done.