genome.fa.s156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167981.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44689

Tables:   1   2   

This is table  1  of  2  ( 130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1294--1356	15	4.6	14	71	13	51	44	0	3	52	1.17
1415--1465	25	2.0	26	88	11	79	52	0	1	45	1.12
1413--1465	14	3.7	14	77	5	52	52	0	1	45	1.11
2476--2710	72	3.3	72	88	3	339	37	18	17	26	1.93
3716--3749	13	2.5	13	90	4	50	47	0	2	50	1.16
3988--4381	180	2.2	180	78	4	384	41	7	10	41	1.67
4793--5133	181	1.9	181	83	1	450	39	8	10	41	1.71
6143--6188	18	2.6	18	89	0	65	52	6	2	39	1.40
6392--6435	13	3.5	13	78	12	56	50	0	2	47	1.13
6920--6959	9	4.3	9	83	3	53	62	2	0	35	1.09
12046--12094	21	2.3	21	82	6	55	53	8	2	36	1.43
12173--12231	13	4.5	13	73	14	50	55	0	1	42	1.09
12173--12222	25	2.0	25	88	3	75	56	0	2	42	1.11
13256--13375	36	3.2	37	75	18	108	51	0	0	47	1.06
13304--13366	16	4.4	15	75	18	55	52	0	0	47	1.00
13327--13393	32	2.1	31	81	13	75	49	1	1	47	1.19
13564--13599	19	1.9	19	88	5	56	41	8	11	38	1.71
13568--13605	19	2.1	19	85	5	51	39	10	10	39	1.74
13563--13613	19	2.6	19	76	17	50	43	9	7	39	1.67
13690--13792	18	5.8	18	71	20	65	44	3	0	50	1.26
14142--14209	22	3.0	22	79	14	68	41	2	1	54	1.24
14259--14301	11	4.1	10	81	6	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14233--14301	21	3.2	21	74	11	52	46	1	2	49	1.25
14471--14542	26	2.8	26	78	17	71	45	4	2	47	1.36
14841--14873	13	2.4	14	90	10	50	42	6	0	51	1.26
14881--14932	27	1.9	27	84	7	70	53	1	3	40	1.30
15747--15843	44	2.3	40	79	13	106	41	1	5	52	1.30
16547--16614	33	2.1	31	81	10	75	44	5	1	48	1.36
16872--16917	14	3.2	14	78	6	56	50	2	2	45	1.26
17435--17483	21	2.3	21	82	6	55	53	8	2	36	1.43
17564--17610	25	1.9	24	91	4	76	55	0	2	42	1.12
18489--18549	31	2.0	29	90	6	95	40	3	6	49	1.45
18698--18743	17	2.8	16	76	23	51	47	0	2	50	1.13
18725--18855	35	3.8	35	71	18	89	48	1	1	48	1.20
19098--19273	18	9.6	17	73	17	108	44	3	1	50	1.31
19195--19246	24	2.2	24	82	6	61	38	5	1	53	1.36
19264--19299	16	2.2	16	90	0	54	27	2	5	63	1.30
19708--19813	14	7.2	14	69	27	51	44	2	1	50	1.27
20280--20328	21	2.5	19	81	15	55	40	6	2	51	1.38
21422--21471	17	2.8	18	84	9	66	54	4	0	42	1.19
22294--22328	10	3.7	10	85	14	56	51	0	0	48	1.00
22734--22780	17	2.8	17	84	12	62	48	0	0	51	1.00
22733--22868	60	2.4	56	75	15	138	48	2	2	46	1.29
22733--22863	29	4.7	28	71	16	85	49	2	2	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23971--24013	22	2.0	21	86	13	61	32	0	2	65	1.06
24436--24497	27	2.3	27	78	16	65	48	1	4	45	1.33
24917--24974	17	3.4	17	83	9	66	46	1	0	51	1.11
24917--24987	23	3.0	23	75	15	63	46	1	1	50	1.18
25132--25185	24	2.4	22	78	6	54	40	3	1	53	1.29
25105--25190	11	7.5	11	68	11	57	38	3	2	55	1.29
25524--25579	23	2.4	23	76	5	60	51	1	0	46	1.11
25702--25791	37	2.5	37	80	16	102	45	0	3	51	1.18
25756--25803	23	2.1	22	88	3	69	41	0	2	56	1.11
26427--26474	6	8.0	6	82	17	64	52	0	0	47	1.00
26415--26522	35	3.1	33	72	26	89	48	0	0	50	1.07
26427--26485	20	3.1	20	76	20	72	50	0	0	49	1.00
26423--26483	14	4.2	14	80	19	72	50	0	0	49	1.00
26430--26489	25	2.4	24	83	10	77	50	0	0	50	1.00
27747--27776	12	2.6	12	94	5	53	46	0	0	53	1.00
27780--27834	26	2.1	27	83	10	78	45	0	0	54	0.99
28062--28108	21	2.2	21	84	0	58	36	0	4	59	1.17
28366--28445	20	4.0	20	79	11	65	50	2	0	47	1.14
28386--28486	15	6.7	15	74	15	50	51	0	0	47	1.07
28368--28424	28	1.9	29	86	10	80	49	3	0	47	1.18
28386--28463	30	2.7	30	80	9	81	51	1	0	47	1.09
28429--28511	15	5.5	15	72	11	53	51	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28418--28549	57	2.3	59	81	16	154	49	0	0	49	1.11
28485--28540	23	2.7	20	73	21	53	46	1	1	50	1.22
28392--28582	18	10.7	18	67	28	83	49	1	0	48	1.12
28364--28587	50	4.2	56	70	22	157	48	1	0	49	1.13
28478--28593	40	2.9	40	73	17	107	47	0	0	50	1.12
28498--28588	20	4.7	19	72	15	73	46	1	1	51	1.15
28914--28958	22	2.0	23	86	4	65	37	0	2	60	1.09
28989--29047	17	3.6	17	76	15	54	55	5	0	38	1.22
29317--29372	28	1.9	30	82	13	73	46	0	1	51	1.11
29822--29883	27	2.3	28	83	10	76	51	3	3	41	1.34
30311--30364	18	2.9	19	75	24	62	51	1	0	46	1.11
30467--30564	35	2.8	36	75	25	102	40	1	1	57	1.12
30907--30946	20	2.0	20	86	13	57	42	5	5	47	1.47
31128--31166	20	2.0	20	89	0	60	56	0	0	43	0.99
31246--31318	22	3.5	20	78	12	83	57	1	0	41	1.07
31432--31471	9	4.2	10	84	15	50	47	0	0	52	1.00
31440--31521	39	2.1	40	81	6	96	50	0	1	48	1.08
31535--31600	13	4.7	14	74	22	59	46	0	0	53	1.00
31922--31971	18	2.8	19	76	11	52	54	0	0	46	1.00
32884--32964	12	6.6	12	69	19	60	48	1	1	49	1.17
33092--33157	29	2.5	26	78	11	71	48	0	0	51	1.00
33452--33505	28	1.9	28	85	7	74	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33621--33668	24	2.0	24	87	0	69	54	2	0	43	1.12
33641--33687	15	3.4	14	77	16	53	51	0	2	46	1.13
33868--33918	20	2.5	20	75	12	59	56	0	0	43	0.99
34059--34104	20	2.4	19	89	10	67	56	2	2	39	1.24
34939--34991	14	3.8	13	76	13	52	45	7	0	47	1.31
35031--35096	25	2.4	26	78	14	71	43	0	1	54	1.09
35063--35099	12	3.2	12	88	7	58	45	0	0	54	1.00
35063--35176	23	4.9	22	72	22	74	49	1	1	47	1.22
35108--35166	19	3.1	19	77	20	68	50	0	1	47	1.11
39319--39401	43	2.0	41	83	9	105	21	14	18	45	1.84
39544--39618	36	2.1	36	82	0	87	18	25	30	25	1.98
39657--39704	12	3.8	12	78	15	53	14	4	0	81	0.84
40031--40099	32	2.0	33	83	10	86	49	2	4	43	1.37
40569--40621	23	2.3	23	84	15	65	49	1	0	49	1.12
40581--40658	8	10.0	8	73	20	51	48	0	0	51	1.00
40592--40658	15	4.3	15	71	19	57	49	0	0	50	1.00
40588--40684	13	7.6	13	71	20	71	48	1	1	49	1.14
40742--40788	15	3.4	14	83	16	55	57	0	0	42	0.98
40933--40974	19	2.2	20	91	4	68	47	2	0	50	1.14
41193--41229	6	6.0	6	96	3	65	51	0	0	48	1.00
41193--41241	18	2.7	19	84	15	68	53	0	2	44	1.12
41663--41709	24	2.0	24	83	8	60	46	6	0	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41780--41829	19	2.7	17	81	12	55	40	0	2	58	1.10
42343--42388	22	2.1	22	91	0	74	47	2	0	50	1.13
42598--42657	30	2.0	31	83	9	79	48	0	5	46	1.24
42618--42659	22	2.0	22	95	4	77	45	0	7	47	1.30
43028--43066	15	2.5	15	87	4	51	53	0	0	46	1.00
43131--43173	21	2.1	20	83	12	52	65	0	0	34	0.93
43143--43183	21	1.9	21	85	14	57	60	0	0	39	0.96
43176--43216	20	2.1	19	86	13	57	39	4	0	56	1.21
43257--43300	21	2.0	21	91	4	70	45	0	0	54	0.99
43264--43313	21	2.5	19	90	6	73	44	0	0	56	0.99

Tables:   1   2