Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 30 of 84
Found at i:6926164 original size:18 final size:17
Alignment explanation
Indices: 6926127--6926160 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6926117 TAAATTTTGA
6926127 ATTTTTAAAATATTTAT
1 ATTTTTAAAATATTTAT
*
6926144 ATTTTTATAATATTTAT
1 ATTTTTAAAATATTTAT
6926161 TATTGAACCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTTAAAATATTTAT
Found at i:6927274 original size:7 final size:7
Alignment explanation
Indices: 6927262--6927286 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6927252 TAATTTGGAA
6927262 TAAATAT
1 TAAATAT
6927269 TAAATAT
1 TAAATAT
6927276 TAAATAT
1 TAAATAT
6927283 TAAA
1 TAAA
6927287 ACTGATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
TAAATAT
Found at i:6930719 original size:2 final size:2
Alignment explanation
Indices: 6930712--6930755 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
6930702 GAATGATGAA
* *
6930712 AT AT AT AT AT AT AT AT AT AT AC AT AT AT -T AC AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6930752 AT AT
1 AT AT
6930756 TAGGTCACAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6940385 original size:2 final size:2
Alignment explanation
Indices: 6940378--6940403 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6940368 TTATTAATTA
6940378 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6940404 TGGTATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6948059 original size:2 final size:2
Alignment explanation
Indices: 6948054--6948084 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6948044 TGTGTGGGGT
6948054 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6948085 GTTTATTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6961014 original size:15 final size:16
Alignment explanation
Indices: 6960988--6961017 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6960978 ATTTTATTAA
6960988 TTTATCGATTTTAATT
1 TTTATCGATTTTAATT
6961004 TTTAT-GATTTTAAT
1 TTTATCGATTTTAAT
6961018 CTTATCCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (16 bp):
TTTATCGATTTTAATT
Found at i:6962686 original size:2 final size:2
Alignment explanation
Indices: 6962633--6962666 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
6962623 TCAACGCCCC
6962633 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6962667 TCATTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6965863 original size:22 final size:23
Alignment explanation
Indices: 6965813--6965863 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
6965803 CACTTTGATT
*
6965813 GAATTTTGATAATTTTTTACATA
1 GAATTTTGACAATTTTTTACATA
*
6965836 -AA-TTTGACAATTTTTTA-TTA
1 GAATTTTGACAATTTTTTACATA
6965856 GAATTTTG
1 GAATTTTG
6965864 GTAATATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 2 0.08
21 16 0.67
22 6 0.25
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (23 bp):
GAATTTTGACAATTTTTTACATA
Found at i:6966009 original size:21 final size:21
Alignment explanation
Indices: 6965942--6966040 Score: 63
Period size: 21 Copynumber: 4.7 Consensus size: 21
6965932 TTTTGATCAT
* * *
6965942 CTTTGGTAGAAATTTAATAAT
1 CTTTGATAGAATTTTAATAAC
* * * **
6965963 CTTTAATAGGATTTTGATAGT
1 CTTTGATAGAATTTTAATAAC
*
6965984 ATTTGATAGAATTTTAATAAC
1 CTTTGATAGAATTTTAATAAC
* * ** *
6966005 CTTTGTTATAATTTTGGTTAC
1 CTTTGATAGAATTTTAATAAC
*
6966026 TTTTGATAGAATTTT
1 CTTTGATAGAATTTT
6966041 TGTAATATTT
Statistics
Matches: 57, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.49
Consensus pattern (21 bp):
CTTTGATAGAATTTTAATAAC
Found at i:6966100 original size:21 final size:21
Alignment explanation
Indices: 6966076--6966135 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
6966066 ACCTTTGGTT
6966076 GAATTTTGATAATTTTTAAAA
1 GAATTTTGATAATTTTTAAAA
* * *
6966097 GAATTTT-AAAAATTTTCAAA
1 GAATTTTGATAATTTTTAAAA
*
6966117 GAATTTTGATATTTTTTAA
1 GAATTTTGATAATTTTTAA
6966136 TAAAATCTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (21 bp):
GAATTTTGATAATTTTTAAAA
Found at i:6966595 original size:23 final size:23
Alignment explanation
Indices: 6966555--6966620 Score: 87
Period size: 23 Copynumber: 2.7 Consensus size: 23
6966545 TTCAATTTGA
*
6966555 TTTAAAATTAATAAAATATTATTT
1 TTTAAAAAT-ATAAAATATTATTT
6966579 TTTAAAAATATAAAATATTATTT
1 TTTAAAAATATAAAATATTATTT
6966602 TTTAATATAAATATAAAAT
1 TTT-A-A-AAATATAAAAT
6966621 TTAATAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
23 17 0.45
24 9 0.24
25 1 0.03
26 11 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTAAAAATATAAAATATTATTT
Found at i:6966625 original size:18 final size:18
Alignment explanation
Indices: 6966602--6966648 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
6966592 AATATTATTT
*
6966602 TTTAATATAA-ATATAAAA
1 TTTAATA-AATATACAAAA
6966620 TTTAATAAATATACAAAA
1 TTTAATAAATATACAAAA
*
6966638 TTTCATAAATA
1 TTTAATAAATA
6966649 AATATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TTTAATAAATATACAAAA
Found at i:6967181 original size:12 final size:12
Alignment explanation
Indices: 6967164--6967188 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6967154 TTAAACGAGA
6967164 AAATAATAAAAG
1 AAATAATAAAAG
6967176 AAATAATAAAAG
1 AAATAATAAAAG
6967188 A
1 A
6967189 CCCTCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAATAATAAAAG
Found at i:6970856 original size:29 final size:29
Alignment explanation
Indices: 6970824--6970894 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 29
6970814 ATTTACAGGT
*
6970824 GAGAAAAGTGAGAGAAAGATGTA-TAGGAG
1 GAGAAAAGTGAGAGAAAGA-GTAGTAGAAG
*
6970853 GAG--AAGAGAGAGAAAGAGTAGTAGAAG
1 GAGAAAAGTGAGAGAAAGAGTAGTAGAAG
*
6970880 AAGAAAAGTG-GAGAA
1 GAGAAAAGTGAGAGAA
6970895 TGGAGTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
26 3 0.09
27 20 0.57
28 5 0.14
29 7 0.20
ACGTcount: A:0.52, C:0.00, G:0.38, T:0.10
Consensus pattern (29 bp):
GAGAAAAGTGAGAGAAAGAGTAGTAGAAG
Found at i:6984055 original size:14 final size:14
Alignment explanation
Indices: 6984036--6984062 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6984026 AAAAAAAAAG
6984036 CTCTTTCTCTCTCT
1 CTCTTTCTCTCTCT
6984050 CTCTTTCTCTCTC
1 CTCTTTCTCTCTC
6984063 CAATGCATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (14 bp):
CTCTTTCTCTCTCT
Found at i:6984649 original size:21 final size:19
Alignment explanation
Indices: 6984594--6984650 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
6984584 AGGCAAACTC
6984594 TCTAAGAATTACTTTTTAT
1 TCTAAGAATTACTTTTTAT
*
6984613 T-TAAGAATAACTTTTTATT
1 TCTAAGAATTACTTTTTA-T
*
6984632 TCTAAAAATTATCTTTTTA
1 TCTAAGAATTA-CTTTTTA
6984651 AAATTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 15 0.47
19 3 0.09
20 7 0.22
21 7 0.22
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.53
Consensus pattern (19 bp):
TCTAAGAATTACTTTTTAT
Found at i:6984956 original size:20 final size:23
Alignment explanation
Indices: 6984918--6984962 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
6984908 TATAATAAAA
6984918 TTTTTTAAAACAAAGATAA-TAT
1 TTTTTTAAAACAAAGATAATTAT
*
6984940 TTTTTTATAA-AAA-ATAATTAT
1 TTTTTTAAAACAAAGATAATTAT
6984961 TT
1 TT
6984963 CAAGTCCGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 8 0.38
22 9 0.43
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTTTAAAACAAAGATAATTAT
Found at i:6989601 original size:2 final size:2
Alignment explanation
Indices: 6989594--6989626 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6989584 AATATAAAAG
6989594 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6989627 ATAGTAGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7007261 original size:17 final size:17
Alignment explanation
Indices: 7007241--7007273 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7007231 TCATATTAAT
7007241 ATATAGGTTTAGATAAC
1 ATATAGGTTTAGATAAC
7007258 ATATAGGTTTAGATAA
1 ATATAGGTTTAGATAA
7007274 TATCATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.36
Consensus pattern (17 bp):
ATATAGGTTTAGATAAC
Found at i:7007281 original size:48 final size:48
Alignment explanation
Indices: 7007177--7007282 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
7007167 TGTGGTTGGT
* * **
7007177 TATACATCATATTAACATATAGGTTTAGATAATAATATTGTGGATGGT
1 TATACATCATATTAACATATAGGTTTAGATAACAATATTGTAGATGAA
*
7007225 TATACATCATATTAATATATAGGTTTAGATAACATATAGGTT-TAGAT-AA
1 TATACATCATATTAACATATAGGTTTAGATAACA-ATA--TTGTAGATGAA
7007274 TAT-CATCAT
1 TATACATCAT
7007283 CCAATTAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
48 38 0.76
49 6 0.12
50 4 0.08
51 2 0.04
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (48 bp):
TATACATCATATTAACATATAGGTTTAGATAACAATATTGTAGATGAA
Found at i:7009848 original size:17 final size:17
Alignment explanation
Indices: 7009826--7009861 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7009816 TCATATAATA
7009826 AATGATCATAACTATTT
1 AATGATCATAACTATTT
7009843 AATGATCATAACTATTT
1 AATGATCATAACTATTT
7009860 AA
1 AA
7009862 ATATAAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (17 bp):
AATGATCATAACTATTT
Found at i:7018287 original size:4 final size:4
Alignment explanation
Indices: 7018271--7018311 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
7018261 TCCTATTTGG
7018271 TATT TA-T TA-T TATT TATT TATT TATT TATTT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TA-TT TATT TATT TA
7018312 GTATTTTTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 6 0.17
4 25 0.71
5 4 0.11
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:7018304 original size:21 final size:22
Alignment explanation
Indices: 7018271--7018311 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7018261 TCCTATTTGG
7018271 TATTTATTATTATTTATTTATT
1 TATTTATTATTATTTATTTATT
7018293 TATTTATT-TTATTTATTTA
1 TATTTATTATTATTTATTTA
7018312 GTATTTTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (22 bp):
TATTTATTATTATTTATTTATT
Found at i:7018319 original size:17 final size:16
Alignment explanation
Indices: 7018271--7018319 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
7018261 TCCTATTTGG
7018271 TATTTATTATTATTTATT
1 TATTTA-TATT-TTTATT
*
7018289 TATTTATTTATTTTATT
1 TATTTATAT-TTTTATT
7018306 TATTTAGTATTTTT
1 TATTTA-TATTTTT
7018320 GCATTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
TATTTATATTTTTATT
Found at i:7018848 original size:53 final size:53
Alignment explanation
Indices: 7018750--7018851 Score: 141
Period size: 53 Copynumber: 1.9 Consensus size: 53
7018740 AAAAAAGAGA
* ***
7018750 ATTTTTAAATAGGCCTAAATGATGAAAAATTTAGAAATTTCAAAAGAAAAAAT
1 ATTTTTAAATAGACCTAAATGATGAAAAATTTAGAAATAAAAAAAGAAAAAAT
* * *
7018803 ATTTTTAAATTGACCTAAATGGTGAAAAATTTATAAATAAAAAAAGAAA
1 ATTTTTAAATAGACCTAAATGATGAAAAATTTAGAAATAAAAAAAGAAA
7018852 GATAAATAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (53 bp):
ATTTTTAAATAGACCTAAATGATGAAAAATTTAGAAATAAAAAAAGAAAAAAT
Found at i:7024178 original size:21 final size:21
Alignment explanation
Indices: 7024154--7024203 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
7024144 CTATAAAGAC
7024154 TACTAAAATTATATCAAACGT
1 TACTAAAATTATATCAAACGT
*
7024175 TACTAAAATTATATCAAATGT
1 TACTAAAATTATATCAAACGT
*
7024196 TATTAAAA
1 TACTAAAA
7024204 CTAGGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.36
Consensus pattern (21 bp):
TACTAAAATTATATCAAACGT
Found at i:7024250 original size:21 final size:21
Alignment explanation
Indices: 7024226--7024364 Score: 67
Period size: 21 Copynumber: 6.7 Consensus size: 21
7024216 TACTGACATC
7024226 ATATCAAAAGTTATCCAAATT
1 ATATCAAAAGTTATCCAAATT
* * *
7024247 ATAT-TAAAGATTAACAAAACTT
1 ATATCAAAAG-TTATCCAAA-TT
* *
7024269 TTA-CAAAA-TTATCAAAATT
1 ATATCAAAAGTTATCCAAATT
* *
7024288 ATATAAAAATTTAT-CAAAGTT
1 ATATCAAAAGTTATCCAAA-TT
* *
7024309 ATATTAAAAG-TAACCAAAATT
1 ATATCAAAAGTTATCC-AAATT
* * *
7024330 ATAT-TAAAGATTACCCAAACT
1 ATATCAAAAG-TTATCCAAATT
7024351 ATTATCAAAA-TTAT
1 A-TATCAAAAGTTAT
7024365 AACTGTTAAG
Statistics
Matches: 89, Mismatches: 17, Indels: 24
0.68 0.13 0.18
Matches are distributed among these distances:
19 4 0.04
20 25 0.28
21 40 0.45
22 17 0.19
23 3 0.03
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.34
Consensus pattern (21 bp):
ATATCAAAAGTTATCCAAATT
Found at i:7025588 original size:24 final size:25
Alignment explanation
Indices: 7025552--7025599 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7025542 TGATAATGTT
7025552 TAATTTCAATTT-AAACAAAATAAA
1 TAATTTCAATTTAAAACAAAATAAA
*
7025576 TAATTT-AATTTTAAAATAAAATAA
1 TAATTTCAA-TTTAAAACAAAATAA
7025600 TATTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 9 0.43
25 10 0.48
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (25 bp):
TAATTTCAATTTAAAACAAAATAAA
Found at i:7025618 original size:16 final size:16
Alignment explanation
Indices: 7025581--7025611 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7025571 ATAAATAATT
*
7025581 TAATTTTAAAATAAAA
1 TAATATTAAAATAAAA
7025597 TAATATTAAAATAAA
1 TAATATTAAAATAAA
7025612 TCAATATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAATATTAAAATAAAA
Found at i:7026368 original size:21 final size:21
Alignment explanation
Indices: 7026344--7026383 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7026334 GGGTATATTT
* * *
7026344 ATAAGTGGGGTGTATATAGTA
1 ATAAATGGGATGTAAATAGTA
7026365 ATAAATGGGATGTAAATAG
1 ATAAATGGGATGTAAATAG
7026384 AATTTCCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (21 bp):
ATAAATGGGATGTAAATAGTA
Found at i:7026957 original size:13 final size:13
Alignment explanation
Indices: 7026941--7026965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7026931 TATTAATTTA
7026941 ATAATATAATATT
1 ATAATATAATATT
7026954 ATAATATAATAT
1 ATAATATAATAT
7026966 ATGGTAGCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAATATAATATT
Found at i:7029416 original size:29 final size:29
Alignment explanation
Indices: 7029345--7029402 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7029335 AGAGCAAAAG
7029345 AAAGAAAAACAAAACCCCAAGTACCAACC
1 AAAGAAAAACAAAACCCCAAGTACCAACC
7029374 AAAGAAAAACAAAACCCCAAGTACCAACC
1 AAAGAAAAACAAAACCCCAAGTACCAACC
7029403 CCAAAACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.31, G:0.07, T:0.03
Consensus pattern (29 bp):
AAAGAAAAACAAAACCCCAAGTACCAACC
Found at i:7035616 original size:28 final size:26
Alignment explanation
Indices: 7035574--7035629 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
7035564 TATCATATCA
*
7035574 TTATTTTTGTTTTCTCCTTTTCAGGTTAT
1 TTATTATTGTTTTCT-CTTTT--GGTTAT
7035603 TTATTATT-TTTTCTCTTTTGGTTAT
1 TTATTATTGTTTTCTCTTTTGGTTAT
7035628 TT
1 TT
7035630 GACATGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
27 5 0.19
28 6 0.23
29 7 0.27
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.70
Consensus pattern (26 bp):
TTATTATTGTTTTCTCTTTTGGTTAT
Found at i:7050827 original size:2 final size:2
Alignment explanation
Indices: 7050820--7050859 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7050810 TTGCAACAAA
*
7050820 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7050860 CTTCTGTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7052405 original size:20 final size:20
Alignment explanation
Indices: 7052380--7052437 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 20
7052370 ACTTGAAATT
7052380 AATAAAATATTAATTTTTTAA
1 AATAAAATATTAA-TTTTTAA
*
7052401 ATAAAAAATATT-ATTTTTAA
1 A-ATAAAATATTAATTTTTAA
7052421 AATATAAATATATAATT
1 AATA-AAATAT-TAATT
7052438 ATATAAATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
19 2 0.06
20 14 0.45
21 3 0.10
22 12 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAAAATATTAATTTTTAA
Found at i:7052411 original size:22 final size:22
Alignment explanation
Indices: 7052383--7052446 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
7052373 TGAAATTAAT
7052383 AAAATATTAATTTTTTAAATAA
1 AAAATATTAATTTTTTAAATAA
*
7052405 AAAATATT-ATTTTTAAAAT-A
1 AAAATATTAATTTTTTAAATAA
* * *
7052425 TAAATATATAATTATATAAATA
1 AAAATAT-TAATTTTTTAAATA
7052447 CATATAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 7 0.21
21 11 0.32
22 16 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATATTAATTTTTTAAATAA
Found at i:7052416 original size:21 final size:23
Alignment explanation
Indices: 7052383--7052437 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
7052373 TGAAATTAAT
*
7052383 AAAATATTAATTTTTTAAATA-A
1 AAAATATTAATTTTTAAAATATA
7052405 AAAATATT-ATTTTTAAAATATA
1 AAAATATTAATTTTTAAAATATA
*
7052427 AATATA-TAATT
1 AAAATATTAATT
7052438 ATATAAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 12 0.41
22 17 0.59
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATATTAATTTTTAAAATATA
Found at i:7054034 original size:2 final size:2
Alignment explanation
Indices: 7054029--7054060 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7054019 TGTGTGTGTG
7054029 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7054061 ATCCTTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7062864 original size:2 final size:2
Alignment explanation
Indices: 7062859--7062897 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7062849 CCCATCTTGG
7062859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7062898 CATTAATTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7065613 original size:23 final size:24
Alignment explanation
Indices: 7065577--7065622 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7065567 CTCAAATGTA
7065577 TATATATATATATTATATATAAAAT
1 TATATATATATATTATAT-TAAAAT
*
7065602 TATA-ATA-ATATTTTATTAAAA
1 TATATATATATATTATATTAAAA
7065623 AAAGATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 3 0.15
25 4 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TATATATATATATTATATTAAAAT
Found at i:7072766 original size:115 final size:115
Alignment explanation
Indices: 7072637--7072868 Score: 455
Period size: 115 Copynumber: 2.0 Consensus size: 115
7072627 AATTCATAAA
7072637 ATAATATATGTTTAGAATTATTTCCACATTTATTTTTTTATAATTAATTTCTATAAAAAATTTAA
1 ATAATATATGTTTAGAATTATTTCCACATTTATTTTTTTATAATTAATTTCTATAAAAAATTTAA
7072702 AAATCTATATATCTCTTAACAAATAAAATTAATTATAAATTTATATTAAT
66 AAATCTATATATCTCTTAACAAATAAAATTAATTATAAATTTATATTAAT
*
7072752 ATAATATATGTTTAGAATTATTTCCACATTTATTTTTTTATAATTAATTTCTATCAAAAATTTAA
1 ATAATATATGTTTAGAATTATTTCCACATTTATTTTTTTATAATTAATTTCTATAAAAAATTTAA
7072817 AAATCTATATATCTCTTAACAAATAAAATTAATTATAAATTTATATTAAT
66 AAATCTATATATCTCTTAACAAATAAAATTAATTATAAATTTATATTAAT
7072867 AT
1 AT
7072869 TTTCATATAA
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 116 1.00
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (115 bp):
ATAATATATGTTTAGAATTATTTCCACATTTATTTTTTTATAATTAATTTCTATAAAAAATTTAA
AAATCTATATATCTCTTAACAAATAAAATTAATTATAAATTTATATTAAT
Found at i:7073303 original size:16 final size:16
Alignment explanation
Indices: 7073282--7073312 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7073272 AATTTTTTCT
7073282 TTATAAAAAAATAAAG
1 TTATAAAAAAATAAAG
7073298 TTATAAAAAAATAAA
1 TTATAAAAAAATAAA
7073313 ATAAGTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
TTATAAAAAAATAAAG
Found at i:7073416 original size:32 final size:33
Alignment explanation
Indices: 7073374--7073435 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
7073364 TTATCAAGTT
*
7073374 TATAATATATTCTTTGAAATTTAAAAAAATATA
1 TATAATATATTATTTGAAATTTAAAAAAATATA
* * *
7073407 TATAA-ATATTATTTTATATTTTAAAAAAT
1 TATAATATATTATTTGAAATTTAAAAAAAT
7073436 TTTATCTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 20 0.80
33 5 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (33 bp):
TATAATATATTATTTGAAATTTAAAAAAATATA
Found at i:7083263 original size:30 final size:31
Alignment explanation
Indices: 7083229--7083304 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
7083219 AGTATTTTAT
* *
7083229 ATTAAAAGTTTATTTGA-ATATAAATTAAAA
1 ATTAAAAGTTTATTTAAGATACAAATTAAAA
*
7083259 ATTAAATGTTTATTTAAGATACAAATTAAAA
1 ATTAAAAGTTTATTTAAGATACAAATTAAAA
*
7083290 ATTAAAATTTTATTT
1 ATTAAAAGTTTATTT
7083305 CTGTAATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 15 0.38
31 25 0.62
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.43
Consensus pattern (31 bp):
ATTAAAAGTTTATTTAAGATACAAATTAAAA
Found at i:7083663 original size:22 final size:20
Alignment explanation
Indices: 7083638--7083690 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
7083628 TTAAAATTAT
7083638 ATATTAAAATATCAATATTTTA
1 ATATTAAAATAT--ATATTTTA
*
7083660 ATATTTTTAAATATATATTTTA
1 ATA--TTAAAATATATATTTTA
7083682 A-ATTAAAAT
1 ATATTAAAAT
7083691 TTATTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 6 0.22
21 1 0.04
22 12 0.44
24 8 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAAAATATATATTTTA
Found at i:7084280 original size:84 final size:84
Alignment explanation
Indices: 7084175--7084335 Score: 252
Period size: 84 Copynumber: 1.9 Consensus size: 84
7084165 CAAAAAATGT
* * *
7084175 CTCACAAGGCGGAGGTGGTGTGAACCCTTATATA-CCCTAGTGACCTTCCTATTATGTTCGATAT
1 CTCACAAGACGGAGGTAGTGTGAACCCTTATATATCCC-AATGACCTTCCTATTATGTTCGATAT
7084239 GGGATTCAGGACTTTGGCGC
65 GGGATTCAGGACTTTGGCGC
* * *
7084259 CTCACAAGACGGAGGTAGTGTGAACCTTTATATATCCCAATGACCTTCTTATTATGTTCGATGTG
1 CTCACAAGACGGAGGTAGTGTGAACCCTTATATATCCCAATGACCTTCCTATTATGTTCGATATG
7084324 GGATTCAGGACT
66 GGATTCAGGACT
7084336 CTTCCTTAGA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 67 0.96
85 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (84 bp):
CTCACAAGACGGAGGTAGTGTGAACCCTTATATATCCCAATGACCTTCCTATTATGTTCGATATG
GGATTCAGGACTTTGGCGC
Found at i:7084511 original size:71 final size:71
Alignment explanation
Indices: 7084395--7084538 Score: 252
Period size: 71 Copynumber: 2.0 Consensus size: 71
7084385 GTCACGAAAG
*
7084395 CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACGATTTAGGGCTGGCTCTG
1 CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACGATTTAGAGCTGGCTCTG
7084460 ATACCA
66 ATACCA
* * *
7084466 CTGGCCACCCTGTCTATCTCTCTCGAGGTGCTTGGCGTGGATCGAACGATTTAGAGCTGGCTCTG
1 CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACGATTTAGAGCTGGCTCTG
7084531 ATACCA
66 ATACCA
7084537 CT
1 CT
7084539 TGTCACAGGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.16, C:0.31, G:0.27, T:0.26
Consensus pattern (71 bp):
CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACGATTTAGAGCTGGCTCTG
ATACCA
Found at i:7086221 original size:9 final size:9
Alignment explanation
Indices: 7086209--7086237 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7086199 TTTTTATTAA
7086209 TTATTTATT
1 TTATTTATT
7086218 TTA-TTATT
1 TTATTTATT
7086226 TTATTTATT
1 TTATTTATT
7086235 TTA
1 TTA
7086238 CATTTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:7086229 original size:17 final size:16
Alignment explanation
Indices: 7086200--7086237 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
7086190 GGTTTAAAGT
7086200 TTTTATTAATTATTTA
1 TTTTATTAATTATTTA
*
7086216 TTTTATTATTTTATTTA
1 TTTTATTA-ATTATTTA
7086233 TTTTA
1 TTTTA
7086238 CATTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTATTAATTATTTA
Found at i:7086731 original size:18 final size:17
Alignment explanation
Indices: 7086708--7086741 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
7086698 AGTTTTAAGA
7086708 TTTTTAATCTAAAAAAAT
1 TTTTTAAT-TAAAAAAAT
7086726 TTTTTAATTAAAAAAA
1 TTTTTAATTAAAAAAA
7086742 CATAATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTTTAATTAAAAAAAT
Found at i:7087113 original size:10 final size:8
Alignment explanation
Indices: 7087078--7087103 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7087068 ATAAATTTAA
7087078 TTATATTT
1 TTATATTT
7087086 TTATATTT
1 TTATATTT
7087094 TTATATTT
1 TTATATTT
7087102 TT
1 TT
7087104 TAACTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATATTT
Found at i:7087340 original size:12 final size:12
Alignment explanation
Indices: 7087281--7087336 Score: 69
Period size: 12 Copynumber: 4.6 Consensus size: 12
7087271 ATTTTTTTAA
7087281 TCAAATTTAAA-
1 TCAAATTTAAAC
7087292 TCAAATTTTAAAC
1 TCAAA-TTTAAAC
*
7087305 ATTAAATTTAAAC
1 -TCAAATTTAAAC
*
7087318 TCAAATTCAAAC
1 TCAAATTTAAAC
7087330 TCAAATT
1 TCAAATT
7087337 CAAATTTACC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 5 0.13
12 23 0.59
13 7 0.18
14 4 0.10
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (12 bp):
TCAAATTTAAAC
Found at i:7087660 original size:18 final size:17
Alignment explanation
Indices: 7087639--7087682 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
7087629 ACAAAGTTTC
7087639 TTAAATTACAAAATAAAA
1 TTAAATTACAAAAT-AAA
*
7087657 TT-AATTACATAATAAA
1 TTAAATTACAAAATAAA
7087673 TTAAAATTAC
1 TT-AAATTAC
7087683 TAACTCATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 5 0.22
17 10 0.43
18 8 0.35
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (17 bp):
TTAAATTACAAAATAAA
Found at i:7093250 original size:2 final size:2
Alignment explanation
Indices: 7093239--7093273 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7093229 ATTTCTCAGA
7093239 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7093274 TGGAGGGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7093650 original size:3 final size:3
Alignment explanation
Indices: 7093642--7093678 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7093632 TTATTTTTAG
7093642 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7093679 TATTATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7093683 original size:3 final size:3
Alignment explanation
Indices: 7093677--7093715 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
7093667 AATAATAATA
7093677 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7093716 TTAGTAATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7094492 original size:30 final size:30
Alignment explanation
Indices: 7094444--7094515 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 30
7094434 TAATTTTTTA
* * *
7094444 ATTTTTTAATTATATATATTTATATAATGAT
1 ATTTTTTAA-TATATATATTTAAAAAATAAT
*
7094475 ATTTTTTAATATTTATATTTAAAAAATAAT
1 ATTTTTTAATATATATATTTAAAAAATAAT
7094505 ATTTTATTAAT
1 ATTTT-TTAAT
7094516 TTCGGGTCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
30 22 0.61
31 14 0.39
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (30 bp):
ATTTTTTAATATATATATTTAAAAAATAAT
Found at i:7102189 original size:15 final size:15
Alignment explanation
Indices: 7102169--7102199 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7102159 GCAAGTGAAA
7102169 TACTTACACTCAAAT
1 TACTTACACTCAAAT
7102184 TACTTACACTCAAAT
1 TACTTACACTCAAAT
7102199 T
1 T
7102200 GAATCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (15 bp):
TACTTACACTCAAAT
Found at i:7105977 original size:7 final size:7
Alignment explanation
Indices: 7105965--7106004 Score: 50
Period size: 6 Copynumber: 6.1 Consensus size: 7
7105955 GATGAAATCG
7105965 TAAAAAA
1 TAAAAAA
7105972 T-AAAAA
1 TAAAAAA
7105978 TAAAAAA
1 TAAAAAA
7105985 TAAAAAA
1 TAAAAAA
*
7105992 -AAAAGA
1 TAAAAAA
7105998 -AAAAAA
1 TAAAAAA
7106004 T
1 T
7106005 CAAAGAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 16 0.55
7 13 0.45
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (7 bp):
TAAAAAA
Found at i:7105983 original size:13 final size:13
Alignment explanation
Indices: 7105965--7105995 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7105955 GATGAAATCG
7105965 TAAAAAATAAAAA
1 TAAAAAATAAAAA
7105978 TAAAAAATAAAAA
1 TAAAAAATAAAAA
7105991 -AAAAA
1 TAAAAA
7105996 GAAAAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:7106939 original size:35 final size:34
Alignment explanation
Indices: 7106900--7107007 Score: 139
Period size: 35 Copynumber: 3.1 Consensus size: 34
7106890 TGGTATTTTT
* *
7106900 GAAAAGATAGTTGCATTTCATGTGCATCATTTTAA
1 GAAAAGATATTTGTATTTCAT-TGCATCATTTTAA
* *
7106935 GAAAAGACATTTGTATTTCATATGCATCATTTTAG
1 GAAAAGATATTTGTATTTCAT-TGCATCATTTTAA
7106970 GAAAAGATATTTGTATTTGCA-T-CATCATTTTAA
1 GAAAAGATATTTGTATTT-CATTGCATCATTTTAA
7107003 GAAAA
1 GAAAA
7107008 AACATTTGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
33 15 0.23
34 1 0.02
35 47 0.72
36 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (34 bp):
GAAAAGATATTTGTATTTCATTGCATCATTTTAA
Found at i:7107310 original size:76 final size:75
Alignment explanation
Indices: 7107220--7107406 Score: 196
Period size: 82 Copynumber: 2.4 Consensus size: 75
7107210 AAGTTCTTGG
*
7107220 TGGTGATATTCGAGTATTAAAGTATGAATTATA-TTTTTTTGATAATGATATCCAAGACATTTTC
1 TGGTGATATTCGAGT-TTAAAGTATGAATTACATTTTTTTTG-TAATGATATCCAAGACATTTTC
7107284 AAAAAAAATCGA
64 AAAAAAAATCGA
* * **
7107296 TGGTGATATCCGAGTTTAAAGTTTAAATTTGTACTTACATTTTTTTTGTGGTGATATCCAAGACA
1 TGGTGATATTCGAGTTTAAAG--T--A--TG-AATTACATTTTTTTTGTAATGATATCCAAGACA
**
7107361 TTTTCAAAATCAATCGA
59 TTTTCAAAAAAAATCGA
* * *
7107378 TGATGATATTCAAGTTTAAAGTTTGAATT
1 TGGTGATATTCGAGTTTAAAGTATGAATT
7107407 TGCATTTGTA
Statistics
Matches: 91, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
75 9 0.10
76 16 0.18
77 1 0.01
79 1 0.01
80 1 0.01
81 2 0.02
82 53 0.58
83 8 0.09
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.41
Consensus pattern (75 bp):
TGGTGATATTCGAGTTTAAAGTATGAATTACATTTTTTTTGTAATGATATCCAAGACATTTTCAA
AAAAAATCGA
Found at i:7107429 original size:82 final size:82
Alignment explanation
Indices: 7107265--7107436 Score: 218
Period size: 82 Copynumber: 2.1 Consensus size: 82
7107255 TTTTTGATAA
* * *
7107265 TGATATCCAAGACATTTTCAAAAAAAATCGATGGTGATATCCGAGTTTAAAGTTTAAATTTGTAC
1 TGATATCCAAGACATTTTCAAAAAAAATCGATGATGATATCCAAGTTTAAAGTTTAAATTTGCAC
* * **
7107330 TTACATTTTTTTTGTGG
66 TTACATTCTCTCAGTGG
** * * *
7107347 TGATATCCAAGACATTTTCAAAATCAATCGATGATGATATTCAAGTTTAAAGTTTGAATTTGCAT
1 TGATATCCAAGACATTTTCAAAAAAAATCGATGATGATATCCAAGTTTAAAGTTTAAATTTGCAC
**
7107412 TTGTATTCTCTCAGTGG
66 TTACATTCTCTCAGTGG
7107429 TGATATCC
1 TGATATCC
7107437 GAGTATCAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 76 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.40
Consensus pattern (82 bp):
TGATATCCAAGACATTTTCAAAAAAAATCGATGATGATATCCAAGTTTAAAGTTTAAATTTGCAC
TTACATTCTCTCAGTGG
Found at i:7107472 original size:42 final size:42
Alignment explanation
Indices: 7107426--7107572 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 42
7107416 ATTCTCTCAG
7107426 TGGTGATATCCGAGTATCAAGGTTTGAATTGTATTTTTTCGA
1 TGGTGATATCCGAGTATCAAGGTTTGAATTGTATTTTTTCGA
* * * * *
7107468 TGGTGATATTCGAGT-TTAAAGTTTGAATTTGCATTTGTAAGCTCTCGG
1 TGGTGATATCCGAGTATCAAGGTTTGAA-TTGTATTT-T----T-TCGA
* * *
7107516 TGGTGATATCTGGGTATCAAGGTTTGAATTGTATTTTCTCGA
1 TGGTGATATCCGAGTATCAAGGTTTGAATTGTATTTTTTCGA
* *
7107558 TGGTAATATTCGAGT
1 TGGTGATATCCGAGT
7107573 TTCTTTTGGT
Statistics
Matches: 80, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
41 10 0.12
42 35 0.44
43 1 0.01
47 2 0.03
48 22 0.28
49 10 0.12
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (42 bp):
TGGTGATATCCGAGTATCAAGGTTTGAATTGTATTTTTTCGA
Found at i:7107487 original size:90 final size:90
Alignment explanation
Indices: 7107374--7107574 Score: 321
Period size: 90 Copynumber: 2.2 Consensus size: 90
7107364 TCAAAATCAA
* * **
7107374 TCGATGATGATATTCAAGTTTAAAGTTTGAATTTGCATTTGTATTCTCTCAGTGGTGATATCCGA
1 TCGATGGTGATATTCGAGTTTAAAGTTTGAATTTGCATTTGTAAGCTCTCAGTGGTGATATCCGA
*
7107439 GTATCAAGGTTTGAATTGTATTTTT
66 GTATCAAGGTTTGAATTGTATTTTC
* * *
7107464 TCGATGGTGATATTCGAGTTTAAAGTTTGAATTTGCATTTGTAAGCTCTCGGTGGTGATATCTGG
1 TCGATGGTGATATTCGAGTTTAAAGTTTGAATTTGCATTTGTAAGCTCTCAGTGGTGATATCCGA
7107529 GTATCAAGGTTTGAATTGTATTTTC
66 GTATCAAGGTTTGAATTGTATTTTC
*
7107554 TCGATGGTAATATTCGAGTTT
1 TCGATGGTGATATTCGAGTTT
7107575 CTTTTGGTGG
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 102 1.00
ACGTcount: A:0.24, C:0.10, G:0.23, T:0.43
Consensus pattern (90 bp):
TCGATGGTGATATTCGAGTTTAAAGTTTGAATTTGCATTTGTAAGCTCTCAGTGGTGATATCCGA
GTATCAAGGTTTGAATTGTATTTTC
Found at i:7107759 original size:42 final size:42
Alignment explanation
Indices: 7107697--7107930 Score: 182
Period size: 42 Copynumber: 5.4 Consensus size: 42
7107687 AATCACTTGG
* * *
7107697 TGGTGATATCCGAGTGTTAAGGTTTGAATTGTATTTTTTTGG
1 TGGTGATATCCGAGTATTAAGGTTTGAATTGTATTTTTTCGA
* *
7107739 TGGTGATATCTGAGTATTAAGGTTTGAACTGTATTTTTTCGA
1 TGGTGATATCCGAGTATTAAGGTTTGAATTGTATTTTTTCGA
* * ** * * *
7107781 TAGTGATATCCGAGTATTAAGATTTGAATTACATCTTCTCAA
1 TGGTGATATCCGAGTATTAAGGTTTGAATTGTATTTTTTCGA
* ** * *
7107823 TGGTGATATCTGAGTATTAAAATTTAAATTGCATCTTCTCGATGAT-GATA
1 TGGTGATATCCGAGTATTAAGGTTTGAATTGTAT-TT-T---T--TCG--A
** *
7107873 GTGGTGATATCCGAGTATTAAGGTTTGAATTACATTTTTTCAA
1 -TGGTGATATCCGAGTATTAAGGTTTGAATTGTATTTTTTCGA
*
7107916 TGGTGATATTCGAGT
1 TGGTGATATCCGAGT
7107931 TTCTTTCGGT
Statistics
Matches: 152, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
42 113 0.74
43 2 0.01
44 2 0.01
46 1 0.01
49 2 0.01
50 3 0.02
51 29 0.19
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (42 bp):
TGGTGATATCCGAGTATTAAGGTTTGAATTGTATTTTTTCGA
Found at i:7107923 original size:51 final size:51
Alignment explanation
Indices: 7107823--7107923 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
7107813 ATCTTCTCAA
* * *
7107823 TGGTGATATCTGAGTATTAAAATTTAAATTGCATCTTCTCGATGATGATAG
1 TGGTGATATCCGAGTATTAAAATTTAAATTACATCTTCTCAATGATGATAG
** * * * *
7107874 TGGTGATATCCGAGTATTAAGGTTTGAATTACATTTTTTCAATGGTGATA
1 TGGTGATATCCGAGTATTAAAATTTAAATTACATCTTCTCAATGATGATA
7107924 TTCGAGTTTC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (51 bp):
TGGTGATATCCGAGTATTAAAATTTAAATTACATCTTCTCAATGATGATAG
Found at i:7108225 original size:101 final size:101
Alignment explanation
Indices: 7108032--7108232 Score: 228
Period size: 101 Copynumber: 2.0 Consensus size: 101
7108022 TTTTTTGATG
* * * *
7108032 AATTTATTTAAAGTTGTTGAGCCTTTACTGAAATGAGCCTTTTGCAAGGTGAGAATTTCTTTAAA
1 AATTTATTTAAAGTTGTTAAGCCTCTACTGAAATGAACCTTTTGCAAGATGAGAATTTCTTTAAA
* * *
7108097 GTTATTGAACCTCTGTTGAAAGGAGCTTTTTTCAAT
66 GTTATTGAACATCTGCTGAAAGAAGCTTTTTTCAAT
* * * *
7108133 AATTTTTTTAAAGTTGTTAAGCCTCTACT-AAGA-GAAACTTTTTTCAAGATGAGAATTTTTTTA
1 AATTTATTTAAAGTTGTTAAGCCTCTACTGAA-ATG-AACCTTTTGCAAGATGAGAATTTCTTTA
* * *
7108196 AAGTTGTTGAGCATCTGCT-AAGATAAGCTTTTTTCAA
64 AAGTTATTGAACATCTGCTGAA-AGAAGCTTTTTTCAA
7108233 AATGAGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
100 5 0.06
101 78 0.94
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (101 bp):
AATTTATTTAAAGTTGTTAAGCCTCTACTGAAATGAACCTTTTGCAAGATGAGAATTTCTTTAAA
GTTATTGAACATCTGCTGAAAGAAGCTTTTTTCAAT
Found at i:7108262 original size:49 final size:51
Alignment explanation
Indices: 7108137--7108279 Score: 164
Period size: 53 Copynumber: 2.8 Consensus size: 51
7108127 TTCAATAATT
* * * * * *
7108137 TTTTTAAAGTTGTTAAGCCTCTACTAAGAGAAACTTTTTTCAAGATGAGAA
1 TTTTTAAAGTTGTTGAGCATCTGCTAAGATAAGCTTTTTTCAAAATGAGAA
7108188 TTTTTTTAAAGTTGTTGAGCATCTGCTAAGATAAGCTTTTTTCAAAATGAG-A
1 --TTTTTAAAGTTGTTGAGCATCTGCTAAGATAAGCTTTTTTCAAAATGAGAA
* * *
7108240 -TTTTAAAATTGTTGAGCATCTGCTGAGATGAGCCTTTTTT
1 TTTTTAAAGTTGTTGAGCATCTGCTAAGATAAG-CTTTTTT
7108280 AGATTTTAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
49 29 0.36
50 7 0.09
52 1 0.01
53 43 0.54
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (51 bp):
TTTTTAAAGTTGTTGAGCATCTGCTAAGATAAGCTTTTTTCAAAATGAGAA
Found at i:7109479 original size:36 final size:36
Alignment explanation
Indices: 7109439--7109509 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
7109429 GCTGAAAGCT
*
7109439 AAAACGACGTTATTTCATTAAAAGGTCAAAATGACC
1 AAAACGACGCTATTTCATTAAAAGGTCAAAATGACC
* *
7109475 AAAACGACGCTATTTTATTAAAGGGTCAAAATGAC
1 AAAACGACGCTATTTCATTAAAAGGTCAAAATGAC
7109510 GTCGATTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (36 bp):
AAAACGACGCTATTTCATTAAAAGGTCAAAATGACC
Found at i:7109798 original size:20 final size:18
Alignment explanation
Indices: 7109759--7109811 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
7109749 AGGTAAAAAA
**
7109759 AAATATTTTTTATTTTTTT
1 AAAT-TTTTTTATTACTTT
7109778 AATATTATTTTTATTACTTT
1 AA-ATT-TTTTTATTACTTT
*
7109798 AAATTTTATTATTA
1 AAATTTTTTTATTA
7109812 ATATTTATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 8 0.28
19 6 0.21
20 15 0.52
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
AAATTTTTTTATTACTTT
Found at i:7109806 original size:21 final size:20
Alignment explanation
Indices: 7109765--7109807 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
7109755 AAAAAAATAT
* *
7109765 TTTTTATTTTTTTAATATTA
1 TTTTTATTCTTTAAATATTA
*
7109785 TTTTTATTACTTTAAATTTTA
1 TTTTTATT-CTTTAAATATTA
7109806 TT
1 TT
7109808 ATTAATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTATTCTTTAAATATTA
Found at i:7110210 original size:9 final size:10
Alignment explanation
Indices: 7110181--7110208 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7110171 ATAAAGATAA
7110181 TAATAAAAAT
1 TAATAAAAAT
7110191 TAATAAAAAT
1 TAATAAAAAT
7110201 TAATAAAA
1 TAATAAAA
7110209 TTTCTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAATAAAAAT
Found at i:7110496 original size:25 final size:24
Alignment explanation
Indices: 7110461--7110511 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7110451 TGAATAATAA
* * *
7110461 AATTTTTAATATAATTAATAAAATC
1 AATTTTCAATA-AATGAAAAAAATC
7110486 AATTTTCAATAAATGAAAAAAATC
1 AATTTTCAATAAATGAAAAAAATC
7110510 AA
1 AA
7110512 GAAAATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AATTTTCAATAAATGAAAAAAATC
Found at i:7112764 original size:7 final size:7
Alignment explanation
Indices: 7112748--7112781 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
7112738 GGGCAACTAT
7112748 AAAA-AA
1 AAAAGAA
7112754 AAAAGAA
1 AAAAGAA
7112761 AAAAGAA
1 AAAAGAA
7112768 AAAAGAA
1 AAAAGAA
*
7112775 AAGAGAA
1 AAAAGAA
7112782 GTAAACTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 4 0.15
7 22 0.85
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:7117498 original size:154 final size:155
Alignment explanation
Indices: 7117279--7117580 Score: 373
Period size: 154 Copynumber: 1.9 Consensus size: 155
7117269 ACCTTCTCAA
* * * *
7117279 AAATTATTAAAATACCCTTTTTTTTATTATTTGATATGAAATTTGCATGTTGCCAATTTGATTAT
1 AAATTATTAAAATACCC-TTTTTTCATTATTTGATAAGAAATTTGCATGTTGCCAAATTAATTAT
* ** *
7117344 T-TTATCTTTATACCATAATTATGAAAATA-CATCTTATCTTATAATTATTTACTATAATACTCT
65 TATAATC-ACATACCATAATTATAAAAATATCAT-TTATCTTATAATTATTTACTATAATA-TCT
7117407 CATACCATATGTATGAAAATACTCTTAAG
127 CATACCATATGTATGAAAATACTCTTAAG
* *
7117436 AAATTATTAAAATA-CC-TTTTTCATTGTTTGCTAAGAAA-TTGACATG-TGACCAAATTAATTA
1 AAATTATTAAAATACCCTTTTTTCATTATTTGATAAGAAATTTG-CATGTTG-CCAAATTAATTA
* * * *
7117497 TTATAATCACATACCATAATTATAAAAATATTATTTCTGTTATAATTATTTTCTATAATATCTCA
64 TTATAATCACATACCATAATTATAAAAATATCATTTATCTTATAATTATTTACTATAATATCTCA
*
7117562 TACCATATTTATGAAAATA
129 TACCATATGTATGAAAATA
7117581 TCATTTCTTT
Statistics
Matches: 126, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
153 28 0.22
154 76 0.60
155 6 0.05
156 2 0.02
157 14 0.11
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (155 bp):
AAATTATTAAAATACCCTTTTTTCATTATTTGATAAGAAATTTGCATGTTGCCAAATTAATTATT
ATAATCACATACCATAATTATAAAAATATCATTTATCTTATAATTATTTACTATAATATCTCATA
CCATATGTATGAAAATACTCTTAAG
Found at i:7117668 original size:59 final size:62
Alignment explanation
Indices: 7117562--7117676 Score: 173
Period size: 59 Copynumber: 1.9 Consensus size: 62
7117552 TAATATCTCA
* * * *
7117562 TACCATATTTATGAAAATATCATTTCTTTTATAAATTGATCAAAATTATTATAATGTCATCC
1 TACCATAATTATGAAAATATCATTTATCTCATAAATTGATCAAAATTATTATAATGTCATCC
7117624 TACCATAATTATG-AAATATC-TTTATCTCAT-AATTGATCAAAATTATTATAATG
1 TACCATAATTATGAAAATATCATTTATCTCATAAATTGATCAAAATTATTATAATG
7117677 CCCTTTCTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 23 0.47
60 7 0.14
61 7 0.14
62 12 0.24
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (62 bp):
TACCATAATTATGAAAATATCATTTATCTCATAAATTGATCAAAATTATTATAATGTCATCC
Found at i:7117672 original size:62 final size:64
Alignment explanation
Indices: 7117540--7117672 Score: 143
Period size: 62 Copynumber: 2.1 Consensus size: 64
7117530 TTTCTGTTAT
* * * * *
7117540 AATTATTTTCTATAATATCTCATACCATATTTATGAAAATATCATTTCTTTTATAAATTGATCA
1 AATTATTATCTATAATATCTCATACCATAATTATGAAAATATCATTTATCTCATAAATTGATCA
* *
7117604 AA--ATTAT-TATAATGTCATCCTACCATAATTATG-AAATATC-TTTATCTCAT-AATTGATCA
1 AATTATTATCTATAATATC-TCATACCATAATTATGAAAATATCATTTATCTCATAAATTGATC-
7117663 A
64 A
7117664 AATTATTAT
1 AATTATTAT
7117673 AATGCCCTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
59 8 0.14
60 10 0.17
61 15 0.26
62 23 0.40
64 2 0.03
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (64 bp):
AATTATTATCTATAATATCTCATACCATAATTATGAAAATATCATTTATCTCATAAATTGATCA
Found at i:7118319 original size:117 final size:117
Alignment explanation
Indices: 7118120--7118332 Score: 300
Period size: 117 Copynumber: 1.8 Consensus size: 117
7118110 TATACCTCTA
* * * **
7118120 TTAAATTATATATTAAATTTTAACATAATATAAAATTAATCACATACTAAATTATTAATATATTC
1 TTAAATTACATATAAAATTTTAACATAATATAAAATTAATCACATACTAAATTATTAAAATACAC
** *
7118185 TTGTAATTACTTTATAAAAATTTGACATGTGGTATTTTATTTGATACCCTTG
66 TTACAATTACTTCATAAAAATTTGACATGTGGTATTTTATTTGATACCCTTG
* * * *
7118237 TTAAATTACATATAAAATTTTAACATAATTTAAAATTAATTACATATTAAATTTTTAAAATACAC
1 TTAAATTACATATAAAATTTTAACATAATATAAAATTAATCACATACTAAATTATTAAAATACAC
* *
7118302 TTACCATTACTTCATAAATATTTGACATGTG
66 TTACAATTACTTCATAAAAATTTGACATGTG
7118333 AAATTTTGTT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
117 82 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (117 bp):
TTAAATTACATATAAAATTTTAACATAATATAAAATTAATCACATACTAAATTATTAAAATACAC
TTACAATTACTTCATAAAAATTTGACATGTGGTATTTTATTTGATACCCTTG
Found at i:7118578 original size:60 final size:58
Alignment explanation
Indices: 7118514--7118712 Score: 181
Period size: 60 Copynumber: 3.3 Consensus size: 58
7118504 TTTTAATTAG
* *
7118514 TCAAAATTATTATAATACCATCTTATTA-AATTATATAAATGCCTTTTCTACTATAATTGA
1 TCAAAATTATTATAATACCTTC-TATTATAATTATA-AAATGCC-CTTCTACTATAATTGA
* * *
7118574 TC-AAATTATTATAATACTCTTCTATTATAATTATAATAATACCCCTCCTA-TCGTAATTG-
1 TCAAAATTATTATAATAC-CTTCTATTATAATTATAA-AAT-GCCCTTCTACT-ATAATTGA
* * * * *
7118633 TCCAAAATTATTATAATACCTTCATATTATACTTACAAAAATGCCCTTCCACCATAATTAA
1 T-CAAAATTATTATAATACCTTC-TATTATAATTA-TAAAATGCCCTTCTACTATAATTGA
*
7118694 TTAAAATTATTATAATACC
1 TCAAAATTATTATAATACC
7118713 CCTTATACCA
Statistics
Matches: 114, Mismatches: 14, Indels: 22
0.76 0.09 0.15
Matches are distributed among these distances:
59 23 0.20
60 58 0.51
61 31 0.27
62 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.40
Consensus pattern (58 bp):
TCAAAATTATTATAATACCTTCTATTATAATTATAAAATGCCCTTCTACTATAATTGA
Found at i:7119979 original size:15 final size:15
Alignment explanation
Indices: 7119959--7119987 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7119949 CTCACCTTTA
7119959 ATCTCTTATACTTAT
1 ATCTCTTATACTTAT
7119974 ATCTCTTATACTTA
1 ATCTCTTATACTTA
7119988 AATAACTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (15 bp):
ATCTCTTATACTTAT
Found at i:7127955 original size:3 final size:3
Alignment explanation
Indices: 7127947--7127979 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7127937 TAATATATAC
7127947 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7127980 GATAGTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7136767 original size:227 final size:223
Alignment explanation
Indices: 7136261--7136921 Score: 713
Period size: 227 Copynumber: 2.9 Consensus size: 223
7136251 TTTATATATA
* * * ** *
7136261 TTTTTTCATATTTTTTTTGTAAAATATATTTAAAAATTAAAAATAATGTAAGGATTATTTATAAA
1 TTTTTTCACA-TTCTTTTATAAAATATATTTAAAAGCTAGAAAT-A--TAAGGATTATTTATAAA
7136326 AAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATATTAACTA
62 AAA-ATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATATTAACT-
* * **
7136391 CAGATAAATTAAAAAAAATAAATTATTTTAAATTAATTTTAAATTGAGATGAAAAGATGTATAGG
125 CAGATAAATTGAAAAAGATAAATTATTTTAAATTAATTTTAAATTGAGATGAAGTGATGTATA-G
*
7136456 AGAAATTTTGCTAAAATGGCTTTGGTATTTACATT
189 AGAAATTTTGCTAAAATGGCTTTGATATTTACATT
* **
7136491 TTTTTTCATATTCTTTTATGCAATATATTTAAAAGCTGAAGATAATATAAGGATTATTTATAAAA
1 TTTTTTCACATTCTTTTATAAAATATATTTAAAAGCT--AGA-AATATAAGGATTATTTATAAAA
* * * *
7136556 AAATTAAAGTTATTAAA-AATATTTTTAAAATTTGTGAAAAATTTAAATACTCATATTAACTGTA
63 AAATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATATTAACT-CA
* *
7136620 GATAAATTGCAAAAGATAAATTACTTTAAAATTAATTTTAAATTGAGATGAAGTGATGTATA-A-
127 GATAAATTGAAAAAGATAAATTA-TTTTAAATTAATTTTAAATTGAGATGAAGTGATGTATAGAG
* * * * * * *
7136683 AATTTTTTTTCTGAAGTTGTTTTGATATTTATATAGTTT
191 AA--ATTTTGCTAAAATGGCTTTGATA-TT-TACA--TT
* *
7136722 TTTTTTCACATTTTCTTTATAAAATATATTTAAAAGCT-GAATATAATGCAATGATTATTTATCA
1 TTTTTTCACATTCT-TTTATAAAATATATTTAAAAGCTAGAA-AT-AT--AAGGATTATTTAT-A
* *
7136786 AAAATATTAAAGATA-TAGAATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATGTTAAC
60 AAAAAATTAAAGATATTA-AATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATATTAA-
* * * *
7136850 CTCAGATAAA-TGAAAAAAGATAAATTATTTTAAATTGATTTTAAATTGAGATAAAGTTATGTAC
123 CTCAGATAAATTG-AAAAAGATAAATTATTTTAAATTAATTTTAAATTGAGATGAAGTGATGTAT
7136914 AGGAGAAA
187 A-GAGAAA
7136922 GAAATTTTAT
Statistics
Matches: 364, Mismatches: 44, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
225 2 0.01
226 1 0.00
227 79 0.22
228 52 0.14
229 48 0.13
230 12 0.03
231 17 0.05
232 38 0.10
233 51 0.14
234 59 0.16
235 3 0.01
236 2 0.01
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (223 bp):
TTTTTTCACATTCTTTTATAAAATATATTTAAAAGCTAGAAATATAAGGATTATTTATAAAAAAA
TTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTTAAATACTCATATTAACTCAGATA
AATTGAAAAAGATAAATTATTTTAAATTAATTTTAAATTGAGATGAAGTGATGTATAGAGAAATT
TTGCTAAAATGGCTTTGATATTTACATT
Found at i:7136892 original size:11 final size:11
Alignment explanation
Indices: 7136870--7136898 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7136860 TGAAAAAAGA
7136870 TAAATT-ATTT
1 TAAATTGATTT
7136880 TAAATTGATTT
1 TAAATTGATTT
7136891 TAAATTGA
1 TAAATTGA
7136899 GATAAAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (11 bp):
TAAATTGATTT
Found at i:7136951 original size:22 final size:22
Alignment explanation
Indices: 7136926--7136969 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7136916 GAGAAAGAAA
*
7136926 TTTT-ATTAAAATTTAAATTTAT
1 TTTTGATT-AAATTTAAAATTAT
7136948 TTTTGATTAAATTTAAAATTAT
1 TTTTGATTAAATTTAAAATTAT
7136970 GGATAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTGATTAAATTTAAAATTAT
Found at i:7137152 original size:2 final size:2
Alignment explanation
Indices: 7137140--7137180 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
7137130 GTATATTGTA
* *
7137140 AT AT A- AT AT AT AT AT AT GT TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7137181 TATGATGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7137191 original size:14 final size:15
Alignment explanation
Indices: 7137145--7137191 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
7137135 TTGTAATATA
7137145 ATATATATATATG-T
1 ATATATATATATGAT
*
7137159 TTATATATATAT-AT
1 ATATATATATATGAT
7137173 ATATATAT-TATGAT
1 ATATATATATATGAT
*
7137187 GTATA
1 ATATA
7137192 AGGTTAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 3 0.11
14 25 0.89
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (15 bp):
ATATATATATATGAT
Found at i:7137256 original size:24 final size:24
Alignment explanation
Indices: 7137228--7137276 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7137218 AGCTTTGGGC
7137228 ATTGTTCAATCATCTTAAAAATCT
1 ATTGTTCAATCATCTTAAAAATCT
7137252 ATTGTTCAATCATCTTAAAAATCT
1 ATTGTTCAATCATCTTAAAAATCT
7137276 A
1 A
7137277 AGTTCATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (24 bp):
ATTGTTCAATCATCTTAAAAATCT
Found at i:7137281 original size:23 final size:24
Alignment explanation
Indices: 7137231--7137282 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
7137221 TTTGGGCATT
*
7137231 GTTCAATCATCTTAAAAATCTATT
1 GTTCAATCATCTTAAAAATCTATA
7137255 GTTCAATCATCTTAAAAATCTA-A
1 GTTCAATCATCTTAAAAATCTATA
7137278 GTTCA
1 GTTCA
7137283 TGTATTGGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
GTTCAATCATCTTAAAAATCTATA
Found at i:7141894 original size:17 final size:17
Alignment explanation
Indices: 7141872--7141904 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7141862 AGATGCAAAA
7141872 ATTAAAAGTAT-TTTTTG
1 ATTAAAA-TATATTTTTG
7141889 ATTAAAATATATTTTT
1 ATTAAAATATATTTTT
7141905 AACCATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTAAAATATATTTTTG
Found at i:7142726 original size:2 final size:2
Alignment explanation
Indices: 7142719--7142744 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7142709 CAAAATATGT
7142719 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7142745 AATAGTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7144042 original size:33 final size:34
Alignment explanation
Indices: 7143976--7144042 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
7143966 TATGTGTCCC
* *
7143976 ATTTGGTTGATATACTTGATATTGAATTCTTTGT
1 ATTTGGTTGATACACTTGATATTGAATTATTTGT
7144010 ATTTGGTTGATACACTT-ATATT-AGATTATTTGT
1 ATTTGGTTGATACACTTGATATTGA-ATTATTTGT
7144043 TTTCTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 1 0.03
33 13 0.43
34 16 0.53
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.52
Consensus pattern (34 bp):
ATTTGGTTGATACACTTGATATTGAATTATTTGT
Found at i:7144763 original size:3 final size:3
Alignment explanation
Indices: 7144755--7144786 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7144745 AAATAATTTT
*
7144755 TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7144787 TGTATGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7145058 original size:13 final size:14
Alignment explanation
Indices: 7145040--7145068 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7145030 TGAATCTAAA
7145040 TAAAATA-TATAAT
1 TAAAATATTATAAT
7145053 TAAAATATTATAAT
1 TAAAATATTATAAT
7145067 TA
1 TA
7145069 TATGAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATATTATAAT
Found at i:7148190 original size:293 final size:292
Alignment explanation
Indices: 7147642--7148214 Score: 645
Period size: 294 Copynumber: 2.0 Consensus size: 292
7147632 GTGATTTTTT
* * *
7147642 TAAAAACCGCCTTCAATAACATTTTGTAATGGATTATTCAAGGCGTTTTTGGTAAAAAAATACCT
1 TAAAAAACGCATTCAATAACATTTTGTAATGGATTATTCAAGGCGTTTTTGGTAAAAAAATACCC
** * *
7147707 TTAATAATCCATACGAAAAATATAGAACGGATTATTGAAGGTTTTTTTTGTTGAAAACGCATTCA
66 TTAATAATCCATACGAAAAATATAGAACGGATTATTGAAGGCGTTTTTGGGTG-AAACGCATTCA
* * *** ** * **
7147772 ATAATTCATTCAATTAATTTTTAGTTGGTATTATTGAAAGTGATTTTTTTTTAAAACGCCTTCAA
130 ATAATCCATTCAATAAATTTTTAACAGAAATTATTGAAAGTGATTTTTGTCAAAAACGCCTTCAA
* * * *
7147837 TAATTCATACAAAAAAATTGAAACGGATTCTTAAAGGTGTTTTTTTGCCAAAACGCCTTTAATAT
195 TAATCCATACAAAAAAATTGAAACAGATTCTTAAAGGCGTTTTTGTGCCAAAACGCCTTTAATAT
7147902 TCCACACAATAAATTTTTAAATAGGATTATTGA
260 TCCACACAATAAATTTTTAAATAGGATTATTGA
* * * * * *
7147935 TAAAAAACGCATTCAATAACATTTTGTTATGGATTATTCACGGTGTTTTCTTGT-TAAATATACC
1 TAAAAAACGCATTCAATAACATTTTGTAATGGATTATTCAAGGCGTTTT-TGGTAAAAAAATACC
* * *
7147999 CTTAATAATCCATA-GAAAAATATGTGGAATGGATTCTTGAAGGCGTTTTTGGGTG-AACGCACC
65 CTTAATAATCCATACGAAAAATA--TAGAACGGATTATTGAAGGCGTTTTTGGGTGAAACGCA--
* * *
7148062 TTTAATAATCCAATT-AATAAATTTTTAACAGAAATTATTGAAGGTGGA-TTTTGTCAAAAATGC
126 TTCAATAATCC-ATTCAATAAATTTTTAACAGAAATTATTGAAAGT-GATTTTTGTCAAAAACGC
* * * * * * * *
7148125 GTTCAATAATCCATACACAATATTTGGAACAGATTCTTGAAGGCGTTTTTGT-CCCAAATGCCTT
189 CTTCAATAATCCATACAAAAAAATTGAAACAGATTCTTAAAGGCGTTTTTGTGCCAAAACGCCTT
* *
7148189 TATTATTCCACACAATATATTTTTAA
254 TAATATTCCACACAATAAATTTTTAA
7148215 GTGAAATTAT
Statistics
Matches: 230, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
292 14 0.06
293 99 0.43
294 112 0.49
295 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (292 bp):
TAAAAAACGCATTCAATAACATTTTGTAATGGATTATTCAAGGCGTTTTTGGTAAAAAAATACCC
TTAATAATCCATACGAAAAATATAGAACGGATTATTGAAGGCGTTTTTGGGTGAAACGCATTCAA
TAATCCATTCAATAAATTTTTAACAGAAATTATTGAAAGTGATTTTTGTCAAAAACGCCTTCAAT
AATCCATACAAAAAAATTGAAACAGATTCTTAAAGGCGTTTTTGTGCCAAAACGCCTTTAATATT
CCACACAATAAATTTTTAAATAGGATTATTGA
Found at i:7148393 original size:35 final size:35
Alignment explanation
Indices: 7148347--7148415 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
7148337 TGTATATGTC
7148347 AAGTTAGTTGTA-AGTTTATGTCAAAAAAATATTTG
1 AAGTTAGTTGTATA-TTTATGTCAAAAAAATATTTG
* *
7148382 AAGTTAGTTGTATATTTTTGTCCAAAAAATATTT
1 AAGTTAGTTGTATATTTATGTCAAAAAAATATTT
7148416 TAGTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.43
Consensus pattern (35 bp):
AAGTTAGTTGTATATTTATGTCAAAAAAATATTTG
Found at i:7151655 original size:12 final size:12
Alignment explanation
Indices: 7151617--7151660 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
7151607 AAACACACCC
7151617 TTCAGCAAACCA
1 TTCAGCAAACCA
*
7151629 TTCAGAAACACCA
1 TTCAGCAA-ACCA
7151642 TTCAGCAAACCA
1 TTCAGCAAACCA
*
7151654 TTAAGCA
1 TTCAGCA
7151661 TATGATTCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.43, C:0.30, G:0.09, T:0.18
Consensus pattern (12 bp):
TTCAGCAAACCA
Found at i:7152539 original size:113 final size:113
Alignment explanation
Indices: 7152339--7152548 Score: 266
Period size: 113 Copynumber: 1.9 Consensus size: 113
7152329 AATAGAAGGA
* *
7152339 ATTATTGAAGGCGTATTATACAAAAAATACCTTCAATAAATTCTTTGAAAAAATTATAACAAATT
1 ATTATTGAAGGCGTATTATACAAAAAATACCTTCAATAAATTCTTTAAAAAAATTATAAAAAATT
*
7152404 ACTGAAGGCATTTTTATGAAAAAAAATGCCTTTAAAAATCTCCTTAAT
66 ACTGAAGGCATTTTTATGAAAAAAAATACCTTTAAAAATCTCCTTAAT
* * * * *
7152452 ATTATTGAAGGTGTTTTATATTAAAAGATACCTTCAAT-AA-TC-TTAAAAAAATTTTTAAAAAA
1 ATTATTGAAGGCGTATTATA-CAAAAAATACCTTCAATAAATTCTTTAAAAAAA-TTAT-AAAAA
* *
7152514 ATTATTGAAGGCATTTGTTCT-AAAAAAAATACCTT
63 ATTACTGAAGGCATTT-TTATGAAAAAAAATACCTT
7152549 CAATAATTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
111 8 0.10
112 5 0.06
113 52 0.63
114 18 0.22
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (113 bp):
ATTATTGAAGGCGTATTATACAAAAAATACCTTCAATAAATTCTTTAAAAAAATTATAAAAAATT
ACTGAAGGCATTTTTATGAAAAAAAATACCTTTAAAAATCTCCTTAAT
Found at i:7153000 original size:187 final size:186
Alignment explanation
Indices: 7152454--7153227 Score: 814
Period size: 187 Copynumber: 4.1 Consensus size: 186
7152444 TCCTTAATAT
* * * * *
7152454 TATTGAAGGTGTTTTAT-ATTAAAAGATACCTTCAATAATCTTAAAAAAATTTTTAAAAAAATTA
1 TATTGAAGGTGTTTT-TCACTAGAAGACACCTTTAATAATCTCAAAAAAA-TTTTAAAAAAATTA
** *
7152518 TTGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACATAAATTAAATGGAATCAGT
64 TTGAAGGCATTTGTT-TTCAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAGT
* * * * * *
7152583 AAAGGCATTTTTCTAAAATAAATACCTTCACTGACCATTTTAAAATTTGAGTAGTGAAA
128 GAAGGCATTTTTTTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * * *
7152642 TATTGAAAGCGTTTTTCA-TTGAAAGACGCTTTTAATAATCTC-AAAAATTTTTGAAAAAAATTA
1 TATTGAAGGTGTTTTTCACTAG-AAGACACCTTTAATAATCTCAAAAAAATTTT-AAAAAAATTA
* * * * * * * *
7152705 TTAAAGCCGTTTGTTCT-AAAAAATGCCTTCAATAATTATGTATA-AAATTTTTTAAA-AAAATT
64 TTGAAGGCATTTGTTTTCAAAAAATACCTTCAATAATTATGTACATAAA----TTAAATGAAATC
* * ** ** * **
7152767 ATTGAA-G-ATATTTTTTGGAATAAATGCCTTCACTAACGGTCTTAAAATTTGAGTACTGGTA
125 AGTGAAGGCAT-TTTTTTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * *
7152828 TATTGAAGGTGTTTTTTACTAGAAGACGCCTATAATAAT-TCAAAAAAATTTTAAAATAAAATTA
1 TATTGAAGGTGTTTTTCACTAGAAGACACCTTTAATAATCTCAAAAAAATTTT-AAA-AAAATTA
*
7152892 TTGAAGGCATTTGTTTTCAAAAAATATCTTCAATAATTATGTACATAAATTAAATGAAATCAGTG
64 TTGAAGGCATTTGTTTTCAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAGTG
* *
7152957 AAGGCATTTTTTTAGAATAAACATCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
129 AAGGCATTTTTTTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * **
7153015 TAGTAAAAGTGTTTTTCACTAGAATACATATTTAATAATCTCAAAAAAAATTTT-AAAAAATTAT
1 TATTGAAGGTGTTTTTCACTAGAAGACACCTTTAATAATCTC-AAAAAAATTTTAAAAAAATTAT
* * * *
7153079 TGAAGGTATTTGTTTTCAAAAAAATGA-CTTCAATAATTATGTACATAAATTAAAAGAATTTAGT
65 TGAAGGCATTTGTTTTC-AAAAAAT-ACCTTCAATAATTATGTACATAAATTAAATGAAATCAGT
* * *
7153143 GAAGGTATTTTTTTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTAGTAAAA
128 GAAGGCATTTTTTTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* *
7153202 TATTGAAGGTGTTTTGCATTAGAAGA
1 TATTGAAGGTGTTTTTCACTAGAAGA
7153228 TGCCTTCAAT
Statistics
Matches: 483, Mismatches: 83, Indels: 41
0.80 0.14 0.07
Matches are distributed among these distances:
184 3 0.01
185 34 0.07
186 120 0.25
187 249 0.52
188 63 0.13
189 14 0.03
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.37
Consensus pattern (186 bp):
TATTGAAGGTGTTTTTCACTAGAAGACACCTTTAATAATCTCAAAAAAATTTTAAAAAAATTATT
GAAGGCATTTGTTTTCAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAGTGAA
GGCATTTTTTTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
Found at i:7153001 original size:373 final size:373
Alignment explanation
Indices: 7152454--7153216 Score: 952
Period size: 373 Copynumber: 2.0 Consensus size: 373
7152444 TCCTTAATAT
* * * *
7152454 TATTGAAGGTGTTTTATATTAAAAGATACCTTCAATAATCTTAAAAAAATTTTTAAAAAAATTAT
1 TATTGAAGGTGTTTTATACTAAAAGACACCTTCAATAATCTCAAAAAAATTTTAAAAAAAATTAT
*
7152519 TGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTA
66 TGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAGTA
* * * * *
7152584 AAGGCATTTTTCTAAAATAAATACCTTCACTGACCATTTTAAAATTTGAGTAGTGAAATATTGAA
131 AAGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAATAGTAAA
* * *
7152649 AGCGTTTTTCA-TTGAAAGACGCT-TTTAATAATCTC-AAAAATTTTTGAAAAAAATTATTAAAG
196 AGCGTTTTTCACTAG-AAGAC-ATATTTAATAATCTCAAAAAAATTTT--AAAAAATTATTAAAG
* * * * *
7152711 CCGTTTG-TTCTAAAAAATGCCTTCAATAATTATGTATA-AAATTTTTTAAAA-AAATTATTGAA
257 CCATTTGTTTCAAAAAAATGACTTCAATAATTATGTACATAAA----TTAAAAGAAATTAGTGAA
* * ** ***
7152773 GATA-TTTTTTGGAATAAATGCCTTCACTAACGGTCTTAAAATTTGAGTACTGGTA
318 GATATTTTTTTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTAAAA
* * *
7152828 TATTGAAGGTGTTTTTTACTAGAAGACGCCTAT-AATAAT-TCAAAAAAATTTTAAAATAAAATT
1 TATTGAAGGTGTTTTATACTAAAAGACACCT-TCAATAATCTCAAAAAAATTTTAAAA-AAAATT
** *
7152891 ATTGAAGGCATTTGTT-TTCAAAAAATATCTTCAATAATTATGTACATAAATTAAATGAAATCAG
64 ATTGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAG
* * * * *
7152955 TGAAGGCATTTTTTTAGAATAAACATCTTCACTAACCATCTTAAAATTTGAGTAGTGGAATAGTA
129 TAAAGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAATAGTA
* * * *
7153020 AAAGTGTTTTTCACTAGAATACATATTTAATAATCTCAAAAAAAATTTTAAAAAATTATTGAAGG
194 AAAGCGTTTTTCACTAGAAGACATATTTAATAATCTC-AAAAAAATTTTAAAAAATTATTAAAGC
* * *
7153085 TATTTGTTTTCAAAAAAATGACTTCAATAATTATGTACATAAATTAAAAGAATTTAGTGAAGGTA
258 CATTTG-TTTCAAAAAAATGACTTCAATAATTATGTACATAAATTAAAAGAAATTAGTGAAGATA
*
7153150 TTTTTTTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTAGTAAAA
322 TTTTTTTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTAAAA
7153202 TATTGAAGGTGTTTT
1 TATTGAAGGTGTTTT
7153217 GCATTAGAAG
Statistics
Matches: 334, Mismatches: 44, Indels: 22
0.83 0.11 0.05
Matches are distributed among these distances:
372 7 0.02
373 172 0.51
374 114 0.34
375 38 0.11
376 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.37
Consensus pattern (373 bp):
TATTGAAGGTGTTTTATACTAAAAGACACCTTCAATAATCTCAAAAAAATTTTAAAAAAAATTAT
TGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACATAAATTAAATGAAATCAGTA
AAGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAATAGTAAA
AGCGTTTTTCACTAGAAGACATATTTAATAATCTCAAAAAAATTTTAAAAAATTATTAAAGCCAT
TTGTTTCAAAAAAATGACTTCAATAATTATGTACATAAATTAAAAGAAATTAGTGAAGATATTTT
TTTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTAAAA
Found at i:7163771 original size:2 final size:2
Alignment explanation
Indices: 7163753--7163793 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
7163743 ATCCGATAAC
* *
7163753 TA TA TA TG T- TA TA -A TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7163793 T
1 T
7163794 GATGCATAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (2 bp):
TA
Found at i:7171086 original size:3 final size:3
Alignment explanation
Indices: 7171078--7171114 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7171068 AATATTGCTA
7171078 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7171115 TGTATGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7171387 original size:13 final size:14
Alignment explanation
Indices: 7171369--7171397 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7171359 CAGACCTAAA
7171369 TAAAATA-TATAAT
1 TAAAATATTATAAT
7171382 TAAAATATTATAAT
1 TAAAATATTATAAT
7171396 TA
1 TA
7171398 TATGAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATATTATAAT
Found at i:7177049 original size:23 final size:23
Alignment explanation
Indices: 7177023--7177068 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7177013 TTTATTTAAT
7177023 TTAA-ATTTTAAAATATTAAAATA
1 TTAATATTTTAAAATA-TAAAATA
*
7177046 TTAATATTTTAATATATAAAATA
1 TTAATATTTTAAAATATAAAATA
7177069 AAAAATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TTAATATTTTAAAATATAAAATA
Found at i:7178317 original size:16 final size:17
Alignment explanation
Indices: 7178293--7178325 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7178283 ATGAATCGAT
*
7178293 AAAATTTATA-ATTTTG
1 AAAACTTATATATTTTG
7178309 AAAACTTATATATTTTG
1 AAAACTTATATATTTTG
7178326 TTAGTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (17 bp):
AAAACTTATATATTTTG
Found at i:7178952 original size:5 final size:5
Alignment explanation
Indices: 7178938--7178966 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7178928 TGTTCACACC
7178938 ATTTT A-TTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
7178967 TTTCTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:7179936 original size:14 final size:12
Alignment explanation
Indices: 7179903--7179941 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
7179893 TTAGGTAAAC
*
7179903 AAAACTTTTTTT
1 AAAAATTTTTTT
7179915 AAAAATTTTTTT
1 AAAAATTTTTTT
7179927 AAAATTATTTTTTT
1 AAAA--ATTTTTTT
7179941 A
1 A
7179942 TTTTAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 15 0.62
14 9 0.38
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (12 bp):
AAAAATTTTTTT
Found at i:7180029 original size:10 final size:10
Alignment explanation
Indices: 7180014--7180053 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
7180004 TTATTATTTT
7180014 ATAATAATAA
1 ATAATAATAA
7180024 ATAATAATAA
1 ATAATAATAA
7180034 ATAATAA-AA
1 ATAATAATAA
* *
7180043 TTTATAATAA
1 ATAATAATAA
7180053 A
1 A
7180054 AGTTTTTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATAATAATAA
Found at i:7192314 original size:48 final size:49
Alignment explanation
Indices: 7192259--7192626 Score: 177
Period size: 49 Copynumber: 7.6 Consensus size: 49
7192249 ATTTTAAAAA
* * *
7192259 AAGATGAAAATTTAAAGTTATTGAACCTCTATTTAGAGAAG-CTTTTTG
1 AAGATGAAAATTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
** *
7192307 AAGATGAATTTTTAAAGTTATT-AAGCTTCTACTTAAAGAAGCCTTTTTC
1 AAGATGAAAATTTAAAGTTATTGAA-CCTCTACTTAAAGAAGCCTTTTTC
* * * * * *
7192356 AAGAT-AAAATTTTAAAGTTATTGAACTTCTGCTGAGAGGAG-CATTTTC
1 AAGATGAAAA-TTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
** * * * * * *
7192404 -A-A-GAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG-TTTTTTC
1 AAGATGAAAATTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
** ** * * *
7192449 AAGATGAGATTTTTAAAGTT-GCGAAACCTCTACTTAGAGGAGCTTTTTCTC
1 AAGATGA-AAATTTAAAGTTATTG-AACCTCTACTTAAAGAAGCCTTTT-TC
* * * * * * * *
7192500 AAAATGATATTTTAAAATTATTGAGCTTCTGCTTAAAGGAG-C-TTTTC
1 AAGATGAAAATTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
* * * * * *
7192547 TAAGATGAAAATTTTAAAATTGTTGAGCCTCTGCTTATAGGAG-CTTTTTC
1 -AAGATGAAAA-TTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
* * *
7192597 AAGAT-AAAATTTTAAAATTGTTGAGCCTCT
1 AAGATGAAAA-TTTAAAGTTATTGAACCTCT
7192627 GCTGAGAGGA
Statistics
Matches: 262, Mismatches: 42, Indels: 32
0.78 0.12 0.10
Matches are distributed among these distances:
45 32 0.12
46 4 0.02
47 6 0.02
48 79 0.30
49 97 0.37
50 35 0.13
51 9 0.03
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (49 bp):
AAGATGAAAATTTAAAGTTATTGAACCTCTACTTAAAGAAGCCTTTTTC
Found at i:7192627 original size:48 final size:48
Alignment explanation
Indices: 7192259--7192880 Score: 485
Period size: 48 Copynumber: 12.9 Consensus size: 48
7192249 ATTTTAAAAA
* * ** * *
7192259 AAGATGAAAA-TTTAAAGTTATTGAACCTCTATTTAGAGAAGCTTTTTG
1 AAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * * * * * * *
7192307 AAGATGAATTTTTAAAGTTATTAAGCTTCTACTTAAAGAAGCCTTTTTC
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTC
* * * * *
7192356 AAGATAAAATTTTAAAGTTATTGAACTTCTGCTGAGAGGAGCATTTTC
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * * *
7192404 AAG---AATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGTTTTTTC
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * * * *
7192449 AAGATGAGATTTTTAAAGTTG-CGAAACCTCTACTTAGAGGAGCTTTTTCTC
1 AAGAT-AAAATTTTAAAGTTGTTG-AGCCTCTGCTTAGAGGAGC-TTTT-TC
* * * * * * *
7192500 AAAATGATATTTTAAAATTATTGAGCTTCTGCTTAAAGGAGC-TTTTC
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* *
7192547 TAAGATGAAAATTTTAAAATTGTTGAGCCTCTGCTTATAGGAGCTTTTTC
1 -AAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * *
7192597 AAGATAAAATTTTAAAATTGTTGAGCCTCTGCTGAGAGGAGCTTTTTT
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * * *
7192645 AAGATAAATTTTTTAAGTTGTTGAGCCTCTG-TTGAGATGAGCATTTT-
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTT-AGAGGAGCTTTTTC
* * *
7192692 --GA-AAAATTTTTAAAATTATGGAGCCTCTGCTTAGAGGAGCTTTTTC
1 AAGATAAAA-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * * * * *
7192738 AAGATGAATTTTTAAAGTTGTTGAGCCTTTGCTAAGATGAG-TATTTTT
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT-TTTTC
* * * **
7192786 AAGATAAATTTTTAAAGTTGTTGAGCCTATGCTTAGAAGAGCTTTCCC
1 AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
* * **
7192834 AAGATGATGAATTTTAAAGTTGTTGAGCCTTTAATTAGAGGAGCTTT
1 AAGAT-A-AAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTT
7192881 CTAATTTTTT
Statistics
Matches: 465, Mismatches: 85, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
44 3 0.01
45 69 0.15
46 2 0.00
47 6 0.01
48 203 0.44
49 109 0.23
50 66 0.14
51 7 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (48 bp):
AAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC
Found at i:7192730 original size:141 final size:141
Alignment explanation
Indices: 7192291--7192813 Score: 491
Period size: 141 Copynumber: 3.7 Consensus size: 141
7192281 GAACCTCTAT
* * * * * * * *
7192291 TTAGAGAAGCTTTTTGAAGATGAATTTTTAAAGTTATTAAGCTTCTACTTAA-AGAAGCCTTTTT
1 TTAGAGGAGCTTTTTCAAGATAAATTTTTAAAGTTGTTGAGCCTCTGC-TAAGAGGAG-CTTTTT
* * * * * * * *
7192355 CAAGATAAAATTTTAAAGTTATTGAACTTCTGCTGAGAGGAGCATTTTCAAGAATTTTTAAAGTT
64 TAAGATAAATTTTTAAAGTTATTGAGCCTCTGTTGAGAGGAGCATTTTGAAAAATTTTTAAAATT
*
7192420 GTTGAGCCTCTAC
129 GTTGAGCCTCTGC
* * * * * * *
7192433 TGAGAGGAGTTTTTTCAAGATGAGATTTTTAAAGTTG-CGAAACCTCTACTTAGAGGAGCTTTTT
1 TTAGAGGAGCTTTTTCAAGAT-AAATTTTTAAAGTTGTTG-AGCCTCTGCTAAGAGGAGCTTTTT
* * * * * *
7192497 CTCAAAAT-GATATTTTAAAATTATTGAGCTTCTGCTT-AAAGGAGCTTTTCTAAGATGAAAA-T
64 -T-AAGATAAAT-TTTTAAAGTTATTGAGCCTCTG-TTGAGAGGAGCATTT-T--GA--AAAATT
7192559 TTTAAAATTGTTGAGCCTCTGC
120 TTTAAAATTGTTGAGCCTCTGC
* * * *
7192581 TTATAGGAGCTTTTTCAAGATAAAATTTTAAAATTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTA
1 TTAGAGGAGCTTTTTCAAGATAAATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTTTA
* * * *
7192646 AGATAAATTTTTTAAGTTGTTGAGCCTCTGTTGAGATGAGCATTTTGAAAAATTTTTAAAATTAT
66 AGATAAATTTTTAAAGTTATTGAGCCTCTGTTGAGAGGAGCATTTTGAAAAATTTTTAAAATTGT
*
7192711 GGAGCCTCTGC
131 TGAGCCTCTGC
* * *
7192722 TTAGAGGAGCTTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTTTGCTAAGATGAG-TATTTTT
1 TTAGAGGAGCTTTTTCAAGATAAATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCT-TTTTT
*
7192786 AAGATAAATTTTTAAAGTTGTTGAGCCT
65 AAGATAAATTTTTAAAGTTATTGAGCCT
7192814 ATGCTTAGAA
Statistics
Matches: 309, Mismatches: 55, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
140 5 0.02
141 103 0.33
142 27 0.09
143 24 0.08
144 37 0.12
145 33 0.11
146 3 0.01
147 34 0.11
148 40 0.13
149 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (141 bp):
TTAGAGGAGCTTTTTCAAGATAAATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTTTA
AGATAAATTTTTAAAGTTATTGAGCCTCTGTTGAGAGGAGCATTTTGAAAAATTTTTAAAATTGT
TGAGCCTCTGC
Found at i:7193047 original size:15 final size:15
Alignment explanation
Indices: 7193027--7193055 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7193017 TATTTATTTA
7193027 TTTTTTTTTCTTTTC
1 TTTTTTTTTCTTTTC
7193042 TTTTTTTTTCTTTT
1 TTTTTTTTTCTTTT
7193056 TTCTTCTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTCTTTTC
Found at i:7193047 original size:17 final size:17
Alignment explanation
Indices: 7193027--7193060 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
7193017 TATTTATTTA
7193027 TTTTTTTTTC--TTTTC
1 TTTTTTTTTCTTTTTTC
7193042 TTTTTTTTTCTTTTTTC
1 TTTTTTTTTCTTTTTTC
7193059 TT
1 TT
7193061 CTTTCTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
17 7 0.41
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTCTTTTTTC
Found at i:7194127 original size:21 final size:21
Alignment explanation
Indices: 7194101--7194144 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7194091 TGATAAATAT
*
7194101 AATTAA-ATAAAAATAATAAAA
1 AATTAATA-AAAAATAAGAAAA
7194122 AATTAATAAAAAATAAGAAAA
1 AATTAATAAAAAATAAGAAAA
7194143 AA
1 AA
7194145 AATTTTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AATTAATAAAAAATAAGAAAA
Found at i:7194128 original size:11 final size:10
Alignment explanation
Indices: 7194109--7194144 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
7194099 ATAATTAAAT
7194109 AAAAATAATA
1 AAAAATAATA
7194119 AAAAATTAATA
1 AAAAA-TAATA
*
7194130 AAAAATAAGA
1 AAAAATAATA
7194140 AAAAA
1 AAAAA
7194145 AATTTTATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
AAAAATAATA
Found at i:7194458 original size:205 final size:199
Alignment explanation
Indices: 7194096--7194479 Score: 488
Period size: 205 Copynumber: 1.9 Consensus size: 199
7194086 GTTTTTGATA
*
7194096 AATATAATTAAATAAAAATAATAAAAAATTAATAAAAAATAAGAAAAAAAATTTTATCCGATGAT
1 AATAAAATTAAATAAAAATAATAAAAAATTAATAAAAAATAAGAAAAAAAATTTTATCCGATGAT
* ** * * *
7194161 GAGATTCAAAAGTACTCCAAGTAGTGATACTTACGAAATCTCTAGGTGATAAGATTTTTTTTAAA
66 GAGATTCAAAAATACTCCAAGTAGAAATACTTAAGAAATCTCTAGGTGAGAAGATTTTTTTAAAA
* * *
7194226 TACTACTAGTGTATTGGAATATTTATAAAAAAAT-TTTAATACAATAAAAAAAATTTTCTTTAAT
131 TACTACCAGTGTATTGAAATATTTAT-AAAAAATCTTCAATACAATAAAAAAAATTTTCTTTAAT
7194290 AAAAT
195 AAAAT
* *
7194295 AATAAAATTAATTAATAATAATAACAAAATAGTAAT-AAAAATAAGAAAAAAGAAAATTTTATCC
1 AATAAAATTAAATAAAAATAATAA-AAAAT--TAATAAAAAATAAG--AAAA-AAAATTTTATCC
* * * *
7194359 GATGAT-AGGATTCTAAAAATATTTCGAGTAGAAATGCTTTAAGAAATCTCTAGGTGAGAAGA-T
60 GATGATGA-GATTC-AAAAATACTCCAAGTAGAAATAC-TTAAGAAATCTCTAGGTGAGAAGATT
* *
7194422 TTTTTAAAATATTACCAGTGTATTGAAATATTTATAAAAAATCTTCAATATAATAAAA
122 TTTTTAAAATACTACCAGTGTATTGAAATATTTATAAAAAATCTTCAATACAATAAAA
7194480 TTTTCATTTT
Statistics
Matches: 157, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
199 21 0.13
200 5 0.03
201 9 0.06
202 4 0.03
203 5 0.03
204 30 0.19
205 61 0.39
206 22 0.14
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (199 bp):
AATAAAATTAAATAAAAATAATAAAAAATTAATAAAAAATAAGAAAAAAAATTTTATCCGATGAT
GAGATTCAAAAATACTCCAAGTAGAAATACTTAAGAAATCTCTAGGTGAGAAGATTTTTTTAAAA
TACTACCAGTGTATTGAAATATTTATAAAAAATCTTCAATACAATAAAAAAAATTTTCTTTAATA
AAAT
Found at i:7207831 original size:46 final size:46
Alignment explanation
Indices: 7207762--7207853 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
7207752 ATAAATATCA
*** *
7207762 CTTAATTACAATAAAAGTTTTTTAATTTTATAAACACGTTTAAAAG
1 CTTAATTACAATAAAAAAATTTTAATTTTATAAACACGGTTAAAAG
7207808 CTTAATTACAATAAAAAAATTTTAATTTTATAAACACGGTTAAAAG
1 CTTAATTACAATAAAAAAATTTTAATTTTATAAACACGGTTAAAAG
7207854 GTTATCATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.38
Consensus pattern (46 bp):
CTTAATTACAATAAAAAAATTTTAATTTTATAAACACGGTTAAAAG
Found at i:7209725 original size:17 final size:16
Alignment explanation
Indices: 7209705--7209740 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
7209695 TATTTGATTT
*
7209705 AATTTAATATTATATAA
1 AATTTAAAATTA-ATAA
7209722 AATTTAAAATTAATAA
1 AATTTAAAATTAATAA
7209738 AAT
1 AAT
7209741 ATTATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTTAAAATTAATAA
Found at i:7209750 original size:23 final size:21
Alignment explanation
Indices: 7209724--7209771 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 21
7209714 TTATATAAAA
7209724 TTTAAAATTAATAAAATATTATT
1 TTTAAAA--AATAAAATATTATT
*
7209747 TTT-AAACATAAAATATTATT
1 TTTAAAAAATAAAATATTATT
7209767 TTTAA
1 TTTAA
7209772 TGTAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 16 0.70
21 1 0.04
22 3 0.13
23 3 0.13
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAAAAATAAAATATTATT
Found at i:7209777 original size:19 final size:20
Alignment explanation
Indices: 7209734--7209771 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7209724 TTTAAAATTA
7209734 ATAAAATATTATTTTTAAAC
1 ATAAAATATTATTTTTAAAC
7209754 ATAAAATATTATTTTTAA
1 ATAAAATATTATTTTTAA
7209772 TGTAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAC
Done.