Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 31 of 84
Found at i:7211332 original size:13 final size:13
Alignment explanation
Indices: 7211314--7211339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7211304 AATAAGTGGA
7211314 GAGATTCCTTGTC
1 GAGATTCCTTGTC
7211327 GAGATTCCTTGTC
1 GAGATTCCTTGTC
7211340 ATCAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
GAGATTCCTTGTC
Found at i:7213603 original size:15 final size:15
Alignment explanation
Indices: 7213575--7213619 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
7213565 TAGTTTATTT
7213575 AAAACAAAAA-AAAA
1 AAAACAAAAACAAAA
7213589 AAAACAAAAACAAAA
1 AAAACAAAAACAAAA
*
7213604 AAAGCAAAAACAAAA
1 AAAACAAAAACAAAA
7213619 A
1 A
7213620 GAGATGCCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAACAAAAACAAAA
Found at i:7214579 original size:2 final size:2
Alignment explanation
Indices: 7214572--7214600 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7214562 CAATAAATTT
7214572 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7214601 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7214605 original size:2 final size:2
Alignment explanation
Indices: 7214600--7214625 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7214590 TCTCTCTCTC
7214600 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7214626 ATTATTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7216229 original size:32 final size:34
Alignment explanation
Indices: 7216193--7216266 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 34
7216183 TTTGGGGGAT
**
7216193 TTTAGATTTTAGGAG-TTTCGAA-TTTTAGGGGG
1 TTTAGATTTTAAAAGATTTCGAATTTTTAGGGGG
*
7216225 TTTAGA-TTTAAAAGATTTTGAATTTTTAGGGGG
1 TTTAGATTTTAAAAGATTTCGAATTTTTAGGGGG
7216258 TTTAGATTT
1 TTTAGATTT
7216267 AAGGGATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 6 0.17
32 12 0.33
33 16 0.44
34 2 0.06
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (34 bp):
TTTAGATTTTAAAAGATTTCGAATTTTTAGGGGG
Found at i:7216257 original size:33 final size:33
Alignment explanation
Indices: 7216215--7216286 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
7216205 GAGTTTCGAA
7216215 TTTTAGGGGGTTTAGATTTAAAAGATTTTGAAT
1 TTTTAGGGGGTTTAGATTTAAAAGATTTTGAAT
** *
7216248 TTTTAGGGGGTTTAGATTTAAGGGATTTTGGAT
1 TTTTAGGGGGTTTAGATTTAAAAGATTTTGAAT
7216281 TTTTAG
1 TTTTAG
7216287 AGGTTTTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (33 bp):
TTTTAGGGGGTTTAGATTTAAAAGATTTTGAAT
Found at i:7217553 original size:23 final size:23
Alignment explanation
Indices: 7217521--7217578 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
7217511 TGAAAAGGGG
* * *
7217521 GATTCCAGAGGGAGGTTGAAGGA
1 GATTCAAGAGAGAAGTTGAAGGA
* *
7217544 GATTCGAGAGAGAAGTTGAAGGG
1 GATTCAAGAGAGAAGTTGAAGGA
7217567 GATTCAAGAGAG
1 GATTCAAGAGAG
7217579 CTTCTTCCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.41, T:0.17
Consensus pattern (23 bp):
GATTCAAGAGAGAAGTTGAAGGA
Found at i:7217830 original size:31 final size:28
Alignment explanation
Indices: 7217795--7217854 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 28
7217785 TCATTTCATT
* *
7217795 TTTTTATATATTTTTATATAATTAATAATTA
1 TTTTTAAATATTATTAT-T-ATTAAT-ATTA
7217826 TTTTTAAATATTATTATTATTAATATTA
1 TTTTTAAATATTATTATTATTAATATTA
7217854 T
1 T
7217855 CATTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 5 0.19
29 6 0.22
30 1 0.04
31 15 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTTTAAATATTATTATTATTAATATTA
Found at i:7228813 original size:1 final size:1
Alignment explanation
Indices: 7228807--7228832 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7228797 GTTTTAAGGC
7228807 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
7228833 GGGCTAAGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7230108 original size:24 final size:24
Alignment explanation
Indices: 7230081--7230139 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
7230071 TTAAATATTT
* *
7230081 ATATTTTTATATTATTAAACATAA
1 ATATTTTTATATTATCAAAAATAA
*
7230105 ATATTTTAATA-TATCAAAAATAA
1 ATATTTTTATATTATCAAAAATAA
* *
7230128 ATAGTATTATAT
1 ATATTTTTATAT
7230140 AATAATATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (24 bp):
ATATTTTTATATTATCAAAAATAA
Found at i:7230506 original size:17 final size:18
Alignment explanation
Indices: 7230484--7230537 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 18
7230474 TTCAATATAA
*
7230484 AATATAACTATA-TTAAT
1 AATATAAATATATTTAAT
7230501 AATATAAATATATTTAAT
1 AATATAAATATATTTAAT
*
7230519 AAT-TTAATA-ATTTAAT
1 AATATAAATATATTTAAT
7230535 AAT
1 AAT
7230538 TTAATAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
16 10 0.29
17 16 0.47
18 8 0.24
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATAAATATATTTAAT
Found at i:7230523 original size:8 final size:8
Alignment explanation
Indices: 7230496--7230545 Score: 73
Period size: 8 Copynumber: 6.0 Consensus size: 8
7230486 TATAACTATA
7230496 TTAATAAT
1 TTAATAAT
*
7230504 ATAAATATAT
1 -TTAATA-AT
7230514 TTAATAAT
1 TTAATAAT
7230522 TTAATAAT
1 TTAATAAT
7230530 TTAATAAT
1 TTAATAAT
7230538 TTAATAAT
1 TTAATAAT
7230546 AAATATTACT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
8 26 0.68
9 10 0.26
10 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
TTAATAAT
Found at i:7231249 original size:34 final size:32
Alignment explanation
Indices: 7231189--7231263 Score: 87
Period size: 34 Copynumber: 2.3 Consensus size: 32
7231179 ATAGCATTTT
* * *
7231189 ATTTTTAAATTTTTGGATATATAAATTTGAAA
1 ATTTTTAAATTGTTGGATATACAAATTTAAAA
*
7231221 ATTTTTAAGAGTTGTTGGATTTACAAATTTAAAA
1 ATTTTTAA-A-TTGTTGGATATACAAATTTAAAA
*
7231255 ATTCTTAAA
1 ATTTTTAAA
7231264 AGTCTCTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 8 0.22
33 2 0.06
34 26 0.72
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.47
Consensus pattern (32 bp):
ATTTTTAAATTGTTGGATATACAAATTTAAAA
Found at i:7237300 original size:24 final size:25
Alignment explanation
Indices: 7237253--7237300 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
7237243 CATTTTTCGT
***
7237253 ATATATAAAAAAATATTTTTTATTA
1 ATATATAAAAAAATATTAAATATTA
7237278 ATATA-AAAAAAATATTAAATATT
1 ATATATAAAAAAATATTAAATATT
7237301 TTCATCATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATATAAAAAAATATTAAATATTA
Found at i:7247791 original size:14 final size:14
Alignment explanation
Indices: 7247753--7247792 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7247743 AGCTGCACAT
*
7247753 AAAAATTTATAAGA
1 AAAAATTTTTAAGA
7247767 AAAAATTTTTAA-A
1 AAAAATTTTTAAGA
7247780 AAAAATTATTTAA
1 AAAAATT-TTTAA
7247793 TAGATTAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
AAAAATTTTTAAGA
Found at i:7263652 original size:5 final size:5
Alignment explanation
Indices: 7263637--7263670 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
7263627 TTTTGTTAAA
*
7263637 AAAAG -AAAG AAAAG AAAAG AAAAG AAAAA AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
7263671 CTATTCACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7264419 original size:15 final size:15
Alignment explanation
Indices: 7264399--7264458 Score: 81
Period size: 15 Copynumber: 4.2 Consensus size: 15
7264389 TTCCAATGAT
7264399 CATCATGACCACGAC
1 CATCATGACCACGAC
7264414 CATCATGACCACGAC
1 CATCATGACCACGAC
* *
7264429 CATC---ACCACCAT
1 CATCATGACCACGAC
7264441 CATCATGACCACGAC
1 CATCATGACCACGAC
7264456 CAT
1 CAT
7264459 AACCATGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
12 10 0.26
15 28 0.74
ACGTcount: A:0.33, C:0.42, G:0.10, T:0.15
Consensus pattern (15 bp):
CATCATGACCACGAC
Found at i:7264451 original size:12 final size:12
Alignment explanation
Indices: 7264436--7264488 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
7264426 GACCATCACC
*
7264436 ACCATCATCATG
1 ACCATCACCATG
*
7264448 ACCA-CGACCATA
1 ACCATC-ACCATG
*
7264460 ACCATGACCATG
1 ACCATCACCATG
*
7264472 ACCATGACCATG
1 ACCATCACCATG
7264484 ACCAT
1 ACCAT
7264489 GAGTAAGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 1 0.03
12 34 0.97
ACGTcount: A:0.36, C:0.36, G:0.11, T:0.17
Consensus pattern (12 bp):
ACCATCACCATG
Found at i:7264463 original size:6 final size:6
Alignment explanation
Indices: 7264444--7264490 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
7264434 CCACCATCAT
* *
7264444 CATGAC CACGAC CATAAC CATGAC CATGAC CATGAC CATGAC CATGA
1 CATGAC CATGAC CATGAC CATGAC CATGAC CATGAC CATGAC CATGA
7264491 GTAAGTACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.36, C:0.34, G:0.15, T:0.15
Consensus pattern (6 bp):
CATGAC
Found at i:7278266 original size:105 final size:105
Alignment explanation
Indices: 7278084--7278292 Score: 355
Period size: 105 Copynumber: 2.0 Consensus size: 105
7278074 CATTTCTACA
* *
7278084 GTGAAAAGTTAAGGCTATTCTGATAGCACCAAAATGAATGTGAGTGTATCATTGTTCTAACCACT
1 GTGAAAAGTTAAGACTATTCTGATAGCACAAAAATGAATGTGAGTGTATCATTGTTCTAACCACT
*
7278149 ATTGAAGAAATTCTTTTGGGATCTAAAGAGTAATAAAGTC
66 ATTGAAGAAATTCTTATGGGATCTAAAGAGTAATAAAGTC
* * * *
7278189 GTGAAAGGTTAAGACTATTCTGATAGCATAAAAATGGATGTGAGTGTATCATTGTTCTGACCACT
1 GTGAAAAGTTAAGACTATTCTGATAGCACAAAAATGAATGTGAGTGTATCATTGTTCTAACCACT
7278254 ATTGAAGAAATTCTTATGGGATCTAAAGAGTAATAAAGT
66 ATTGAAGAAATTCTTATGGGATCTAAAGAGTAATAAAGT
7278293 GCTCTTGAAG
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (105 bp):
GTGAAAAGTTAAGACTATTCTGATAGCACAAAAATGAATGTGAGTGTATCATTGTTCTAACCACT
ATTGAAGAAATTCTTATGGGATCTAAAGAGTAATAAAGTC
Found at i:7283322 original size:14 final size:15
Alignment explanation
Indices: 7283303--7283356 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
7283293 ATTTGATTAA
7283303 TAAAATAT-TATTTT
1 TAAAATATATATTTT
* *
7283317 TAAAATATAAATATT
1 TAAAATATATATTTT
7283332 T-AAATATATA-TTT
1 TAAAATATATATTTT
7283345 TATAAATATATA
1 TA-AAATATATA
7283357 AATAAAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 3 0.09
14 16 0.48
15 14 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAAATATATATTTT
Found at i:7283365 original size:29 final size:27
Alignment explanation
Indices: 7283302--7283365 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
7283292 TATTTGATTA
7283302 ATAAAATATTATTTTTAAAATATAAAT
1 ATAAAATATTATTTTTAAAATATAAAT
*
7283329 ATTTAAATATATATTTTATAAATATATAAAT
1 A-TAAAATAT-TATTTT-TAAA-ATATAAAT
7283360 A-AAAAT
1 ATAAAAT
7283366 TAATTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
27 1 0.03
28 7 0.23
29 10 0.32
30 4 0.13
31 9 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
ATAAAATATTATTTTTAAAATATAAAT
Found at i:7293090 original size:18 final size:19
Alignment explanation
Indices: 7293067--7293107 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7293057 AAAAGTAAAT
7293067 AAAAAT-AAA-CAAAATAAG
1 AAAAATAAAATCAAAAT-AG
7293085 AAAAATAAAATCAAAATAG
1 AAAAATAAAATCAAAATAG
7293104 AAAA
1 AAAA
7293108 TGGAGTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 9 0.43
20 6 0.29
ACGTcount: A:0.78, C:0.05, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAATAAAATCAAAATAG
Found at i:7293720 original size:52 final size:50
Alignment explanation
Indices: 7293613--7293747 Score: 128
Period size: 52 Copynumber: 2.6 Consensus size: 50
7293603 TTTTAATAAG
** * *
7293613 AATTGATTCTGAAATTAAATCTCAAAATCTCTTCCTATCAATTTAATGTA
1 AATTGATTAGGAAATTAAATCTCAAAATCTCTTCCCATCAATTTAATGCA
* * *
7293663 AATTGATTAGGAAATTAAATCTCGACAATCTC-TCCACATCATTTTTAATGCC
1 AATTGATTAGGAAATTAAATCTC-AAAATCTCTTCC-CATCA-ATTTAATGCA
*** *
7293715 AATTGATTTTAAAATTAAATACTAAAAATCTCT
1 AATTGATTAGGAAATTAAAT-CTCAAAATCTCT
7293748 CCGTTACGAT
Statistics
Matches: 68, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
50 24 0.35
51 11 0.16
52 31 0.46
53 2 0.03
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (50 bp):
AATTGATTAGGAAATTAAATCTCAAAATCTCTTCCCATCAATTTAATGCA
Found at i:7299120 original size:12 final size:12
Alignment explanation
Indices: 7299103--7299136 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7299093 TGGAGAGGAT
7299103 TATTAAATTTAA
1 TATTAAATTTAA
*
7299115 TATTAAATTTAT
1 TATTAAATTTAA
7299127 TATTTAAATT
1 TA-TTAAATT
7299137 ATTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTAAATTTAA
Found at i:7300424 original size:23 final size:23
Alignment explanation
Indices: 7300371--7300424 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
7300361 TGAATTTTTT
7300371 TAATTATAATATATAAAAAATCA
1 TAATTATAATATATAAAAAATCA
* *
7300394 TAAGTATAAT-TTTAAAATAAT-A
1 TAATTATAATATATAAAA-AATCA
7300416 TAAATTATA
1 T-AATTATA
7300425 TTATTACAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
TAATTATAATATATAAAAAATCA
Found at i:7312880 original size:90 final size:90
Alignment explanation
Indices: 7312759--7313031 Score: 424
Period size: 90 Copynumber: 3.0 Consensus size: 90
7312749 GGTCATGATC
* *
7312759 ATGGGTGACATCAGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTATAAGGTGCACATTCATG
1 ATGGGTGACATCGGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTACAAGGTGCACATTCATG
*
7312824 ATCTGCTCATGGCATTATTTGCATA
66 ATCTGCTCATGGCATTATTTGTATA
7312849 ATGGGTGACA-CTGGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTACAAGGTGCACATTCAT
1 ATGGGTGACATC-GGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTACAAGGTGCACATTCAT
*
7312913 GATCTGCTCATGG-ATTACTTGTATA
65 GATCTGCTCATGGCATTATTTGTATA
* * * *
7312938 ATGGGTTACGTCGGCTTGTCAAAGCCTACTTAATTTCTCTTTTAATTACAAGGTGTACTACATTC
1 ATGGGTGACATCGGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTACAAGGTG--C-ACATTC
7313003 ATGATCTGCTCATGGCATTATTTGTATA
63 ATGATCTGCTCATGGCATTATTTGTATA
7313031 A
1 A
7313032 GGATGAAGAA
Statistics
Matches: 168, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
89 60 0.36
90 74 0.44
91 1 0.01
92 21 0.12
93 12 0.07
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (90 bp):
ATGGGTGACATCGGCTTGTCAAAGCCTACTTAAGTTCTCTTTTAAGTACAAGGTGCACATTCATG
ATCTGCTCATGGCATTATTTGTATA
Found at i:7318240 original size:21 final size:22
Alignment explanation
Indices: 7318211--7318255 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7318201 TTTAGTAAAT
7318211 AATT-TTTTTTAAATAAAATAA
1 AATTGTTTTTTAAATAAAATAA
* *
7318232 AATTGTTTTTTAAATTAATTAA
1 AATTGTTTTTTAAATAAAATAA
7318254 AA
1 AA
7318256 CTAATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTGTTTTTTAAATAAAATAA
Found at i:7318957 original size:9 final size:9
Alignment explanation
Indices: 7318943--7319005 Score: 63
Period size: 9 Copynumber: 7.0 Consensus size: 9
7318933 ATATTTTAAA
7318943 AATAATAAC
1 AATAATAAC
*
7318952 AATAATAAT
1 AATAATAAC
**
7318961 AGCAATAAC
1 AATAATAAC
7318970 AATAATAAC
1 AATAATAAC
* *
7318979 AACAACAAC
1 AATAATAAC
* *
7318988 AACAATAAT
1 AATAATAAC
7318997 AATAATAAC
1 AATAATAAC
7319006 TAACACAACA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.65, C:0.14, G:0.02, T:0.19
Consensus pattern (9 bp):
AATAATAAC
Found at i:7318969 original size:18 final size:18
Alignment explanation
Indices: 7318946--7319005 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
7318936 TTTTAAAAAT
*
7318946 AATAACAATAATAATAGC
1 AATAACAATAATAATAAC
*
7318964 AATAACAATAATAACAAC
1 AATAACAATAATAATAAC
* * *
7318982 AACAACAACAATAATAAT
1 AATAACAATAATAATAAC
7319000 AATAAC
1 AATAAC
7319006 TAACACAACA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.65, C:0.15, G:0.02, T:0.18
Consensus pattern (18 bp):
AATAACAATAATAATAAC
Found at i:7318997 original size:24 final size:24
Alignment explanation
Indices: 7318970--7319016 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7318960 TAGCAATAAC
7318970 AATAATAACAAC-AACAACAACAAT
1 AATAATAACAACTAAC-ACAACAAT
*
7318994 AATAATAATAACTAACACAACAA
1 AATAATAACAACTAACACAACAA
7319017 CCAAATCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.66, C:0.19, G:0.00, T:0.15
Consensus pattern (24 bp):
AATAATAACAACTAACACAACAAT
Found at i:7319013 original size:27 final size:27
Alignment explanation
Indices: 7318943--7319017 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
7318933 ATATTTTAAA
* * * *
7318943 AATAATAACAATAATAATAGCAATAAC
1 AATAATAACAACAACAACAACAATAAC
*
7318970 AATAATAACAACAACAACAACAATAAT
1 AATAATAACAACAACAACAACAATAAC
7318997 AATAATAACTAAC-ACAACAAC
1 AATAATAAC-AACAACAACAAC
7319018 CAAATCTAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.64, C:0.17, G:0.01, T:0.17
Consensus pattern (27 bp):
AATAATAACAACAACAACAACAATAAC
Found at i:7321005 original size:13 final size:13
Alignment explanation
Indices: 7320971--7321020 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
7320961 ATTATCAAAA
*
7320971 ATTTTAATTATGT
1 ATTTTAATTATTT
*
7320984 A-TTTCATTATTT
1 ATTTTAATTATTT
7320996 ATTTTAATTATTT
1 ATTTTAATTATTT
7321009 -TTATTAATTATT
1 ATT-TTAATTATT
7321021 ATTAAAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 12 0.38
13 20 0.62
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (13 bp):
ATTTTAATTATTT
Found at i:7321023 original size:25 final size:25
Alignment explanation
Indices: 7320971--7321020 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7320961 ATTATCAAAA
*
7320971 ATTTTAATTATGTATTTCATTATTT
1 ATTTTAATTATGTATTTAATTATTT
* *
7320996 ATTTTAATTATTTTTATTAATTATT
1 ATTTTAATTATGTAT-TTAATTATT
7321021 ATTAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (25 bp):
ATTTTAATTATGTATTTAATTATTT
Found at i:7322034 original size:4 final size:4
Alignment explanation
Indices: 7322025--7322058 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
7322015 AGTTGCCAGA
* *
7322025 AAAG AAAG AAAA AAAG AAAA AAAG AAAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
7322059 TAAATAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:7322042 original size:8 final size:8
Alignment explanation
Indices: 7322022--7322058 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
7322012 AAAAGTTGCC
7322022 AGAAAAGAA
1 AGAAAA-AA
7322031 AGAAAAAA
1 AGAAAAAA
7322039 AGAAAAAA
1 AGAAAAAA
*
7322047 AGAAAGAA
1 AGAAAAAA
7322055 AGAA
1 AGAA
7322059 TAAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:7330036 original size:21 final size:22
Alignment explanation
Indices: 7330007--7330048 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7329997 TGACTAAAGT
* *
7330007 ATTTGAAAATATTTAATGTAAC
1 ATTTGAAAAAAATTAATGTAAC
7330029 ATTT-AAAAAAATTAATGTAA
1 ATTTGAAAAAAATTAATGTAA
7330049 TGTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.38
Consensus pattern (22 bp):
ATTTGAAAAAAATTAATGTAAC
Found at i:7330098 original size:17 final size:18
Alignment explanation
Indices: 7330061--7330098 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
7330051 TTTAAATTAT
7330061 ATATTTATTAATTAATATG
1 ATATTTATT-ATTAATATG
*
7330080 ATATTTATT-TTAATGTG
1 ATATTTATTATTAATATG
7330097 AT
1 AT
7330099 TATATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
19 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
ATATTTATTATTAATATG
Found at i:7332733 original size:15 final size:15
Alignment explanation
Indices: 7332709--7332746 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7332699 TCTTTGATAT
*
7332709 ATAAAATTTTAAAAA
1 ATAAATTTTTAAAAA
*
7332724 ATAAATTTTTAATAA
1 ATAAATTTTTAAAAA
7332739 ATAAATTT
1 ATAAATTT
7332747 GTATGTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAATTTTTAAAAA
Found at i:7332775 original size:20 final size:20
Alignment explanation
Indices: 7332718--7332779 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
7332708 TATAAAATTT
*
7332718 TAAA-AAATA-AATTTTTAA
1 TAAATAAATAGAATTTTTTA
* * *
7332736 TAAATAAATTTGTA-TGTTTA
1 TAAATAAA-TAGAATTTTTTA
7332756 TAAATAAATAGAATTTTTTA
1 TAAATAAATAGAATTTTTTA
7332776 TAAA
1 TAAA
7332780 GTTAAATATA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 4 0.12
19 6 0.18
20 22 0.67
21 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
TAAATAAATAGAATTTTTTA
Found at i:7333635 original size:21 final size:23
Alignment explanation
Indices: 7333611--7333660 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
7333601 CCCCAAATTA
7333611 ATAAATTATTA-TTTTT-AAAAT
1 ATAAATTATTATTTTTTAAAAAT
*
7333632 ATAAAATATTATTTTTTAAAAAT
1 ATAAATTATTATTTTTTAAAAAT
7333655 ATAAAT
1 ATAAAT
7333661 ATTTAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 5 0.20
23 10 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATAAATTATTATTTTTTAAAAAT
Found at i:7333647 original size:22 final size:20
Alignment explanation
Indices: 7333610--7333663 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 20
7333600 ACCCCAAATT
*
7333610 AATAAATTATTATTTTTAAA
1 AATAAAATATTATTTTTAAA
7333630 ATATAAAATATTATTTTTTAAA
1 A-ATAAAATATTA-TTTTTAAA
7333652 AATATAAATATT
1 AATA-AAATATT
7333664 TAAATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 13 0.43
22 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AATAAAATATTATTTTTAAA
Found at i:7333648 original size:23 final size:23
Alignment explanation
Indices: 7333615--7333663 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
7333605 AAATTAATAA
*
7333615 ATTATTATTTTTAAAATATAAAAT
1 ATTATTATTTTAAAAATAT-AAAT
7333639 ATTATT-TTTTAAAAATATAAAT
1 ATTATTATTTTAAAAATATAAAT
7333661 ATT
1 ATT
7333664 TAAATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 7 0.29
23 11 0.46
24 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATTATTTTAAAAATATAAAT
Found at i:7333667 original size:8 final size:8
Alignment explanation
Indices: 7333648--7333691 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
7333638 TATTATTTTT
*
7333648 TAAAAATA
1 TAAATATA
*
7333656 TAAATATT
1 TAAATATA
7333664 TAAATATA
1 TAAATATA
*
7333672 TAATTATA
1 TAAATATA
7333680 TAAATATA
1 TAAATATA
7333688 TAAA
1 TAAA
7333692 ATAAATAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAAATATA
Found at i:7336086 original size:22 final size:21
Alignment explanation
Indices: 7336026--7336086 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 21
7336016 AGTTCAAGAA
* *
7336026 AAAAATAAAATTTTAAAGCTGC
1 AAAAATAAAA-GTAAAAGCTGC
*
7336048 -AAAAT-AAAGCAATAAGCTTGC
1 AAAAATAAAAGTAA-AAGC-TGC
7336069 AAAAATAAAAGTAAAAGC
1 AAAAATAAAAGTAAAAGC
7336087 AAAAAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
19 1 0.03
20 7 0.23
21 8 0.26
22 9 0.29
23 6 0.19
ACGTcount: A:0.59, C:0.10, G:0.11, T:0.20
Consensus pattern (21 bp):
AAAAATAAAAGTAAAAGCTGC
Found at i:7337282 original size:21 final size:21
Alignment explanation
Indices: 7337229--7337274 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7337219 TTTGATTGTG
*
7337229 TTATATAT-TAATTTATAATT
1 TTATATATGAAATTTATAATT
*
7337249 TTGTATATGAAATTTATAATT
1 TTATATATGAAATTTATAATT
7337270 TTATA
1 TTATA
7337275 ATCTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
TTATATATGAAATTTATAATT
Found at i:7337369 original size:6 final size:6
Alignment explanation
Indices: 7337358--7337385 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7337348 ATAATAGTTT
7337358 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
7337386 TACATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:7340277 original size:37 final size:37
Alignment explanation
Indices: 7340236--7340308 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
7340226 CTAGTTAGTG
*
7340236 ATTAACTATGCTTAATTAGGCTGTGGTACTATGATGC
1 ATTAACTATGCTTAATTAGGCTATGGTACTATGATGC
* * *
7340273 ATTAATTATGCTTAGTTAGTCTATGGTACTATGATG
1 ATTAACTATGCTTAATTAGGCTATGGTACTATGATG
7340309 TGTCAGTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (37 bp):
ATTAACTATGCTTAATTAGGCTATGGTACTATGATGC
Found at i:7343724 original size:19 final size:20
Alignment explanation
Indices: 7343700--7343743 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
7343690 TAATTTTATA
7343700 TTTATA-TTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
7343719 TTTATATTTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
7343739 TTTAT
1 TTTAT
7343744 GAATTTCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTATATTTAAAAATAATAT
Found at i:7353155 original size:24 final size:25
Alignment explanation
Indices: 7353128--7353176 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7353118 TCTTTAAAAC
*
7353128 ACTTT-GTATTG-TGGTTTGTATTAA
1 ACTTTGGTATTGAT-GTTTATATTAA
7353152 ACTTTGGTATTGATGTTTATATTAA
1 ACTTTGGTATTGATGTTTATATTAA
7353177 TGAAATCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 16 0.73
26 1 0.05
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.53
Consensus pattern (25 bp):
ACTTTGGTATTGATGTTTATATTAA
Found at i:7354255 original size:138 final size:138
Alignment explanation
Indices: 7354093--7354367 Score: 424
Period size: 138 Copynumber: 2.0 Consensus size: 138
7354083 GGATTAATCC
* * * *
7354093 CCCCACATAAGAGATTGATCACCTAAGGAATGGATTGATCAGGTGCATTATCAAATCGATCAGGT
1 CCCCACATAAGAGATTGATCACCTAAGAAATGGATCGATCAAGTGCATTATCAAATCAATCAGGT
* * *
7354158 AAGGCCTTTTATGTATAATTTTGGGATGTTTCAAAGCTGACCCAATCGATCCCCTAAATGAGGGG
66 AAGGCCTTTTATGCATAATTTTGGGATGTTTCAAAGCTGACCCAATCAATCCCCTAAATGAAGGG
7354223 ATCGATCT
131 ATCGATCT
* * ***
7354231 CCCCACATAAGGGATTGATCACCTAAGAAATGGATCGATCAAGTGCTTTATTTGATCAATCAGGT
1 CCCCACATAAGAGATTGATCACCTAAGAAATGGATCGATCAAGTGCATTATCAAATCAATCAGGT
* *
7354296 AAGGCCTTTTATGCATAATTTTGGGGTGTTTCAAAGTTGACCCAATCAATCCCCTAAATGAAGGG
66 AAGGCCTTTTATGCATAATTTTGGGATGTTTCAAAGCTGACCCAATCAATCCCCTAAATGAAGGG
7354361 ATCGATC
131 ATCGATC
7354368 CCATAAGTCT
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 123 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (138 bp):
CCCCACATAAGAGATTGATCACCTAAGAAATGGATCGATCAAGTGCATTATCAAATCAATCAGGT
AAGGCCTTTTATGCATAATTTTGGGATGTTTCAAAGCTGACCCAATCAATCCCCTAAATGAAGGG
ATCGATCT
Found at i:7355370 original size:20 final size:20
Alignment explanation
Indices: 7355345--7355387 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
7355335 ATGTATACAC
*
7355345 ATAATTAAGTAAATAGGTGT
1 ATAATTAAGTAAATAAGTGT
7355365 ATAATTAAGTAAATAAGTGT
1 ATAATTAAGTAAATAAGTGT
7355385 ATA
1 ATA
7355388 TGCACGTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (20 bp):
ATAATTAAGTAAATAAGTGT
Found at i:7355641 original size:34 final size:33
Alignment explanation
Indices: 7355589--7355660 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 33
7355579 TTTAAAAATT
*
7355589 TTTAAAATTTCTTGAATATTCATTTTCGAGAAA
1 TTTAAAATTTCTTAAATATTCATTTTCGAGAAA
* * * *
7355622 CTTTAAAGTTTTTTAAATATTTATTTTTGAGAAA
1 -TTTAAAATTTCTTAAATATTCATTTTCGAGAAA
7355656 TTTAA
1 TTTAA
7355661 TTTTAGAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (33 bp):
TTTAAAATTTCTTAAATATTCATTTTCGAGAAA
Found at i:7355943 original size:12 final size:12
Alignment explanation
Indices: 7355926--7355950 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7355916 CTAAAAAGGA
7355926 CATATTCGTTTT
1 CATATTCGTTTT
7355938 CATATTCGTTTT
1 CATATTCGTTTT
7355950 C
1 C
7355951 TCATAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56
Consensus pattern (12 bp):
CATATTCGTTTT
Found at i:7365817 original size:24 final size:25
Alignment explanation
Indices: 7365789--7365849 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
7365779 AATTTTATCT
*
7365789 TATATATTTAGATA-ATTTTTTATAAA
1 TATATA-TTA-ATATATTTTTAATAAA
7365815 TATATATTAATATATTTTTAATAAA
1 TATATATTAATATATTTTTAATAAA
7365840 -ATTATATTAA
1 TA-TATATTAA
7365850 CTTTAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 4 0.12
25 22 0.69
26 6 0.19
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TATATATTAATATATTTTTAATAAA
Found at i:7365828 original size:34 final size:33
Alignment explanation
Indices: 7365768--7365831 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
7365758 AAAATAAAAT
* *
7365768 TAATTTTTTTAAATTTTATCTTATATATTTAGA
1 TAATTTTTTTAAATTATATCTAATATATTTAGA
7365801 TAATTTTTTATAAATATATAT-TAATATATTT
1 TAATTTTTT-TAAAT-TATATCTAATATATTT
7365832 TTAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 9 0.33
34 14 0.52
35 4 0.15
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (33 bp):
TAATTTTTTTAAATTATATCTAATATATTTAGA
Found at i:7366308 original size:23 final size:23
Alignment explanation
Indices: 7366261--7366310 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7366251 TTTATCTTAC
*
7366261 ATATTTATGTAATATTGTTATAA
1 ATATTTATGTAATATTGTTAAAA
*
7366284 ATATTTAT-TAATATATTTTAAAA
1 ATATTTATGTAATAT-TGTTAAAA
7366307 ATAT
1 ATAT
7366311 ATTAATTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
ATATTTATGTAATATTGTTAAAA
Found at i:7366347 original size:23 final size:24
Alignment explanation
Indices: 7366304--7366352 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
7366294 ATATATTTTA
7366304 AAAATATATTAATTCTAATTAATTT
1 AAAATATATTAATTCTAATT-ATTT
7366329 AAAATA-A-TAATT-TATATTATTT
1 AAAATATATTAATTCTA-ATTATTT
7366351 AA
1 AA
7366353 TTAAAAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 1 0.04
25 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATATATTAATTCTAATTATTT
Found at i:7366642 original size:13 final size:12
Alignment explanation
Indices: 7366605--7366648 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
7366595 GATGAAAACG
7366605 AAAATAAAT-TT
1 AAAATAAATATT
**
7366616 AAAATATTTATT
1 AAAATAAATATT
7366628 AAATATAAATATT
1 AAA-ATAAATATT
7366641 AAAATAAA
1 AAAATAAA
7366649 AAATGAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 7 0.26
12 10 0.37
13 10 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAATAAATATT
Found at i:7384183 original size:22 final size:22
Alignment explanation
Indices: 7384153--7384196 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7384143 TGTATATTTA
* *
7384153 TATTTGTATATCTAGAATTAAG
1 TATTAGTATACCTAGAATTAAG
*
7384175 TATTAGTATCCCTAGAATTAAG
1 TATTAGTATACCTAGAATTAAG
7384197 AAAGATTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (22 bp):
TATTAGTATACCTAGAATTAAG
Found at i:7386454 original size:22 final size:22
Alignment explanation
Indices: 7386428--7386471 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7386418 TGTATATTTA
*
7386428 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7386450 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7386472 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7386874 original size:18 final size:18
Alignment explanation
Indices: 7386851--7386885 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7386841 ATGTTCTTTG
*
7386851 GGTAAAGTTTCTAGTTCA
1 GGTAAAGCTTCTAGTTCA
*
7386869 GGTAAAGCTTCTGGTTC
1 GGTAAAGCTTCTAGTTC
7386886 TCATGGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
GGTAAAGCTTCTAGTTCA
Found at i:7390353 original size:22 final size:22
Alignment explanation
Indices: 7390328--7390371 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7390318 TGTATATTTA
*
7390328 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7390350 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7390372 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7407952 original size:18 final size:19
Alignment explanation
Indices: 7407929--7407968 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7407919 GTTTAGTGGC
7407929 CAAATTTAATCA-AAAATT
1 CAAATTTAATCACAAAATT
* *
7407947 CAAATTTAGTGACAAAATT
1 CAAATTTAATCACAAAATT
7407966 CAA
1 CAA
7407969 TTAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (19 bp):
CAAATTTAATCACAAAATT
Found at i:7410758 original size:20 final size:20
Alignment explanation
Indices: 7410733--7410770 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7410723 TGAAATTTTT
7410733 AATTAAAA-TAATTAAATTAA
1 AATTAAAATTAA-TAAATTAA
7410753 AATTAAAATTAATAAATT
1 AATTAAAATTAATAAATT
7410771 GAAAGGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTAAAATTAATAAATTAA
Found at i:7410850 original size:14 final size:13
Alignment explanation
Indices: 7410819--7410860 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7410809 AAAAAAATTT
*
7410819 AATAATTTTAATA
1 AATATTTTTAATA
*
7410832 TATATTTTTAAATA
1 AATATTTTT-AATA
7410846 AATATTTTTAATA
1 AATATTTTTAATA
7410859 AA
1 AA
7410861 AATGTTGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATATTTTTAATA
Found at i:7410961 original size:12 final size:12
Alignment explanation
Indices: 7410944--7410991 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
7410934 TTTTACATAT
7410944 TATTAATTTTTA
1 TATTAATTTTTA
7410956 TATTAATTTTTA
1 TATTAATTTTTA
* *
7410968 T-TAAATTTTCAA
1 TATTAATTTT-TA
*
7410980 TTTTAATTTTTA
1 TATTAATTTTTA
7410992 ATTTAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 7 0.23
12 16 0.53
13 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTAATTTTTA
Found at i:7410971 original size:22 final size:24
Alignment explanation
Indices: 7410943--7411001 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
7410933 TTTTTACATA
*
7410943 TTATT-AATTTT-TATATTAATTT
1 TTATTAAATTTTCAATATTAATTT
*
7410965 TTATTAAATTTTCAATTTTAATTT
1 TTATTAAATTTTCAATATTAATTT
7410989 TTAATTTAAATTT
1 TT-A-TTAAATTT
7411002 ATTCATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 5 0.16
23 6 0.19
24 11 0.35
25 1 0.03
26 8 0.26
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATTAAATTTTCAATATTAATTT
Found at i:7415034 original size:24 final size:24
Alignment explanation
Indices: 7414983--7415052 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
7414973 TTTTATTTTC
*
7414983 AATATATTTATTATTTATGTAATA
1 AATATATTTATTATTTATGTAAAA
*
7415007 AATATATTTATTATTTGT-TAAAA
1 AATATATTTATTATTTATGTAAAA
* *
7415030 TAATAAATATATT-TTTATAGTAA
1 -AATATATTTATTATTTAT-GTAA
7415053 TTTTACGGGA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
23 8 0.21
24 27 0.71
25 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
AATATATTTATTATTTATGTAAAA
Found at i:7415237 original size:16 final size:16
Alignment explanation
Indices: 7415218--7415252 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7415208 AGTATTTTAG
7415218 TAATTTCAAATTTTGT
1 TAATTTCAAATTTTGT
*
7415234 TAATTTCATATTTTGT
1 TAATTTCAAATTTTGT
7415250 TAA
1 TAA
7415253 AATTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (16 bp):
TAATTTCAAATTTTGT
Found at i:7415351 original size:62 final size:61
Alignment explanation
Indices: 7415278--7415424 Score: 181
Period size: 61 Copynumber: 2.4 Consensus size: 61
7415268 TTAATAAGAC
7415278 ATTATAATAATTTTGACTAATTATAATAAGAATAGCATTTTCATAATTATAGTA-GAAGGAAT
1 ATTATAATAATTTTGACTAATTATAATAAGAA-AGCATTTTCATAATTATAGTAGGAAGG-AT
* * * * * *
7415340 ATTATAGTAATTATGGAC-AATCATAATAAGAAGGTATTTTCATAATTGTAGTAGGAAGGAT
1 ATTATAATAATT-TTGACTAATTATAATAAGAAAGCATTTTCATAATTATAGTAGGAAGGAT
* *
7415401 GTTATAATAATTTTAACTAATTAT
1 ATTATAATAATTTTGACTAATTAT
7415425 GATATAAGGG
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
60 3 0.04
61 35 0.49
62 29 0.41
63 4 0.06
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.39
Consensus pattern (61 bp):
ATTATAATAATTTTGACTAATTATAATAAGAAAGCATTTTCATAATTATAGTAGGAAGGAT
Found at i:7416389 original size:41 final size:41
Alignment explanation
Indices: 7416332--7416419 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
7416322 ACAGAATGTA
*
7416332 ATTTTTACTTTATTTTATAATATCACAATTTTAAAATACGT
1 ATTTTTACTTTATTTTATAATATCACAATTTTAAAATACAT
*
7416373 ATTTTTACTTTATTTTATAATATCATAATTTTAAAATACAT
1 ATTTTTACTTTATTTTATAATATCACAATTTTAAAATACAT
7416414 ATTTTT
1 ATTTTT
7416420 TTTAAACATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.36, C:0.08, G:0.01, T:0.55
Consensus pattern (41 bp):
ATTTTTACTTTATTTTATAATATCACAATTTTAAAATACAT
Found at i:7416997 original size:13 final size:13
Alignment explanation
Indices: 7416979--7417005 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7416969 TGAGTTTTAA
7416979 TGGTTTTAGGGTT
1 TGGTTTTAGGGTT
7416992 TGGTTTTAGGGTT
1 TGGTTTTAGGGTT
7417005 T
1 T
7417006 AGAAGGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.37, T:0.56
Consensus pattern (13 bp):
TGGTTTTAGGGTT
Found at i:7417004 original size:21 final size:19
Alignment explanation
Indices: 7416947--7417005 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 19
7416937 GTTTTTGAGT
*
7416947 TTTGGATTTTAGAGTTTTAG
1 TTTGG-TTTTAGGGTTTTAG
*
7416967 TTTGAGTTTTAATGGTTTTAGGG
1 TTTG-GTTTT-AGGGTTTTA--G
7416990 TTTGGTTTTAGGGTTT
1 TTTGGTTTTAGGGTTT
7417006 AGAAGGTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 8 0.25
21 14 0.44
22 5 0.16
23 5 0.16
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (19 bp):
TTTGGTTTTAGGGTTTTAG
Found at i:7417044 original size:28 final size:29
Alignment explanation
Indices: 7416995--7417137 Score: 137
Period size: 28 Copynumber: 4.9 Consensus size: 29
7416985 TAGGGTTTGG
7416995 TTTTAGGGTTTAGAAGGTTTATGGTTTCAA
1 TTTTAGGGTTTAG-AGGTTTATGGTTTCAA
* * *
7417025 TTTTAGGATTT-GAGGTTTATGATTTTAA
1 TTTTAGGGTTTAGAGGTTTATGGTTTCAA
* *
7417053 TTTTAGGGTTTGGAGGGTTTAAGGTTTCAA
1 TTTTAGGGTTTAGA-GGTTTATGGTTTCAA
* * * *
7417083 TTTTAAGGTTT-GGGGTTTAGGGTTTTAA
1 TTTTAGGGTTTAGAGGTTTATGGTTTCAA
* * *
7417111 TTTTAAGGTTTATGGGGTTTAAGGTTT
1 TTTTAGGGTTTA-GAGGTTTATGGTTT
7417138 AGAGGGTTTA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
28 48 0.49
29 4 0.04
30 45 0.46
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (29 bp):
TTTTAGGGTTTAGAGGTTTATGGTTTCAA
Found at i:7417072 original size:58 final size:58
Alignment explanation
Indices: 7416995--7417137 Score: 182
Period size: 58 Copynumber: 2.5 Consensus size: 58
7416985 TAGGGTTTGG
* *
7416995 TTTTAGGGTTTAGAAGGTTTATGGTTTCAATTTT-AGGATTTGAGGTTTATGATTTTAA
1 TTTTAGGGTTTAGAAGGTTTAAGGTTTCAATTTTAAGG-TTTGAGGTTTAGGATTTTAA
* * * *
7417053 TTTTAGGGTTTGGAGGGTTTAAGGTTTCAATTTTAAGGTTTGGGGTTTAGGGTTTTAA
1 TTTTAGGGTTTAGAAGGTTTAAGGTTTCAATTTTAAGGTTTGAGGTTTAGGATTTTAA
* *
7417111 TTTTAAGGTTTATG-GGGTTTAAGGTTT
1 TTTTAGGGTTTA-GAAGGTTTAAGGTTT
7417138 AGAGGGTTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 71 0.95
59 4 0.05
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (58 bp):
TTTTAGGGTTTAGAAGGTTTAAGGTTTCAATTTTAAGGTTTGAGGTTTAGGATTTTAA
Found at i:7417089 original size:14 final size:14
Alignment explanation
Indices: 7417070--7417121 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
7417060 GTTTGGAGGG
7417070 TTTAAGGTTTCAAT
1 TTTAAGGTTTCAAT
****
7417084 TTTAAGGTTTGGGG
1 TTTAAGGTTTCAAT
* *
7417098 TTTAGGGTTTTAAT
1 TTTAAGGTTTCAAT
7417112 TTTAAGGTTT
1 TTTAAGGTTT
7417122 ATGGGGTTTA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.21, C:0.02, G:0.25, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTCAAT
Found at i:7417133 original size:16 final size:16
Alignment explanation
Indices: 7417112--7417147 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
7417102 GGGTTTTAAT
7417112 TTTAAGGTTTATG-GGG
1 TTTAAGGTTTA-GAGGG
7417128 TTTAAGGTTTAGAGGG
1 TTTAAGGTTTAGAGGG
7417144 TTTA
1 TTTA
7417148 GGATTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.05
16 18 0.95
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (16 bp):
TTTAAGGTTTAGAGGG
Found at i:7417163 original size:14 final size:14
Alignment explanation
Indices: 7417144--7417190 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
7417134 GTTTAGAGGG
7417144 TTTAGGATTTTGAT
1 TTTAGGATTTTGAT
** *
7417158 TTTAGGATTTCAAG
1 TTTAGGATTTTGAT
*
7417172 TTTAGGGTTTTGAT
1 TTTAGGATTTTGAT
7417186 TTTAG
1 TTTAG
7417191 AGTTTAAAGA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.21, C:0.02, G:0.23, T:0.53
Consensus pattern (14 bp):
TTTAGGATTTTGAT
Found at i:7417227 original size:21 final size:22
Alignment explanation
Indices: 7417201--7417242 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7417191 AGTTTAAAGA
7417201 GTTTGGAGTTTT-ATTTTTAGG
1 GTTTGGAGTTTTCATTTTTAGG
*
7417222 GTTTGGGGTTTTCATTTTTAG
1 GTTTGGAGTTTTCATTTTTAG
7417243 TTTTTAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.57
Consensus pattern (22 bp):
GTTTGGAGTTTTCATTTTTAGG
Found at i:7417294 original size:30 final size:30
Alignment explanation
Indices: 7417257--7417500 Score: 139
Period size: 30 Copynumber: 8.6 Consensus size: 30
7417247 TAAGGTTTCA
7417257 AGGGTTTGGAAGGTTTAGGATTTTGATTTT
1 AGGGTTTGGAAGGTTTAGGATTTTGATTTT
*
7417287 -GGAGTTTGGAGGGTTTAGGATTTTGATTTT
1 AGG-GTTTGGAAGGTTTAGGATTTTGATTTT
* *
7417317 AGGGTTT--AAAGTTTAGGGTTTTGATTTT
1 AGGGTTTGGAAGGTTTAGGATTTTGATTTT
7417345 AGGGTTT---A-----AGG-TTTTGATTTT
1 AGGGTTTGGAAGGTTTAGGATTTTGATTTT
* ** * * *
7417366 GGGGTTTTAAAGATTTA-AAGTTTAGATTTT
1 AGGGTTTGGAAGGTTTAGGA-TTTTGATTTT
* * *
7417396 AGGGTTT-CAAGGGTTTGGGGTTTTGATTTT
1 AGGGTTTGGAA-GGTTTAGGATTTTGATTTT
* *
7417426 AGGATTT-TAAGGATTTAAGG-TTTTGATTTT
1 AGGGTTTGGAAGG-TTT-AGGATTTTGATTTT
* **
7417456 AAGGTTT-GAAGAGTTTAGGGGTTTGATTTT
1 AGGGTTTGGAAG-GTTTAGGATTTTGATTTT
*
7417486 AAGGTTT-G-AGGTTTA
1 AGGGTTTGGAAGGTTTA
7417501 AGGTTTAAAG
Statistics
Matches: 175, Mismatches: 21, Indels: 38
0.75 0.09 0.16
Matches are distributed among these distances:
21 16 0.09
22 3 0.02
24 1 0.01
27 1 0.01
28 30 0.17
29 12 0.07
30 107 0.61
31 5 0.03
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (30 bp):
AGGGTTTGGAAGGTTTAGGATTTTGATTTT
Found at i:7417319 original size:14 final size:14
Alignment explanation
Indices: 7417270--7417347 Score: 59
Period size: 14 Copynumber: 5.4 Consensus size: 14
7417260 GTTTGGAAGG
7417270 TTTAGGATTTTGAT
1 TTTAGGATTTTGAT
* *
7417284 TTT-GGAGTTTGGAGGG
1 TTTAGGA-TTTTGA--T
7417300 TTTAGGATTTTGAT
1 TTTAGGATTTTGAT
* ** *
7417314 TTTAGGGTTTAAAG
1 TTTAGGATTTTGAT
*
7417328 TTTAGGGTTTTGAT
1 TTTAGGATTTTGAT
7417342 TTTAGG
1 TTTAGG
7417348 GTTTAAGGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
13 3 0.06
14 35 0.71
16 8 0.16
17 3 0.06
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (14 bp):
TTTAGGATTTTGAT
Found at i:7417345 original size:21 final size:21
Alignment explanation
Indices: 7417321--7417365 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7417311 GATTTTAGGG
*
7417321 TTTAAAGTTTAGGGTTTTGAT
1 TTTAAAGTTTAAGGTTTTGAT
**
7417342 TTTAGGGTTTAAGGTTTTGAT
1 TTTAAAGTTTAAGGTTTTGAT
7417363 TTT
1 TTT
7417366 GGGGTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (21 bp):
TTTAAAGTTTAAGGTTTTGAT
Found at i:7417348 original size:14 final size:14
Alignment explanation
Indices: 7417300--7417351 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
7417290 GTTTGGAGGG
*
7417300 TTTAGGATTTTGAT
1 TTTAGGGTTTTGAT
** *
7417314 TTTAGGGTTTAAAG
1 TTTAGGGTTTTGAT
7417328 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
7417342 TTTAGGGTTT
1 TTTAGGGTTT
7417352 AAGGTTTTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.19, C:0.00, G:0.27, T:0.54
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:7417370 original size:21 final size:21
Alignment explanation
Indices: 7417327--7417372 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
7417317 AGGGTTTAAA
*
7417327 GTTTAGGGTTTTGATTTTAGG
1 GTTTAAGGTTTTGATTTTAGG
*
7417348 GTTTAAGGTTTTGATTTTGGG
1 GTTTAAGGTTTTGATTTTAGG
7417369 GTTT
1 GTTT
7417373 TAAAGATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.54
Consensus pattern (21 bp):
GTTTAAGGTTTTGATTTTAGG
Found at i:7417374 original size:126 final size:124
Alignment explanation
Indices: 7417095--7417391 Score: 307
Period size: 126 Copynumber: 2.4 Consensus size: 124
7417085 TTAAGGTTTG
* * * ** *
7417095 GGGTTTAGGGTTTTAATTTTAAGGTTTATGGGGTTTAAGGTTTAGAGGGTTTAGGATTTTGATTT
1 GGGTTTAAGGTTTTCATTTTGAGGTTT-TAAGGTTTAAGGTTTAGAAGGTTTAGGATTTTGATTT
*
7417160 TAGGATTTCAAGTTTAGGGTTTTGATTTTAGAGTTTAAAGAGTTTGGAGTTTTATTTTTA
65 TAGGATTTCAAGTTTAGGATTTTGATTTTAGAGTTTAAAGAGTTTGGAGTTTTATTTTTA
** * * *
7417220 GGGTTTGGGGTTTTCATTTTTAGTTTTTAAGGTTTCAAGGGTTTGGAAGGTTTAGGATTTTGATT
1 GGGTTTAAGGTTTTCATTTTGAGGTTTTAAGGTTT-AA-GGTTTAGAAGGTTTAGGATTTTGATT
* * *
7417285 TT-GGAGTTTGGAGGGTTTAGGATTTTGATTTTAGGGTTT-AA-AGTTTAGG-GTTTTGA-TTTT
64 TTAGGA-TTT-CA-AGTTTAGGATTTTGATTTTAGAGTTTAAAGAGTTT-GGAGTTTT-ATTTTT
7417345 A
124 A
* * * *
7417346 GGGTTTAAGGTTTTGATTTTGGGGTTTTAAAGATTTAAAGTTTAGA
1 GGGTTTAAGGTTTTCATTTTGAGGTTTT-AAGGTTTAAGGTTTAGA
7417392 TTTTAGGGTT
Statistics
Matches: 143, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
124 6 0.04
125 34 0.24
126 68 0.48
127 12 0.08
128 23 0.16
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.48
Consensus pattern (124 bp):
GGGTTTAAGGTTTTCATTTTGAGGTTTTAAGGTTTAAGGTTTAGAAGGTTTAGGATTTTGATTTT
AGGATTTCAAGTTTAGGATTTTGATTTTAGAGTTTAAAGAGTTTGGAGTTTTATTTTTA
Found at i:7417421 original size:60 final size:60
Alignment explanation
Indices: 7417345--7417486 Score: 178
Period size: 60 Copynumber: 2.4 Consensus size: 60
7417335 TTTTGATTTT
** * * *
7417345 AGGGTTTAAGGTTTTGATTTTGGGGTTTTAAAGATTTAAAGTTTAGATTTTAGGGTTTCA
1 AGGGTTTGGGGTTTTGATTTTAGGATTTTAAAGATTTAAAGTTTAGATTTTAAGGTTTCA
* * * *
7417405 AGGGTTTGGGGTTTTGATTTTAGGATTTTAAGGATTTAAGGTTTTGATTTTAAGGTTTGA
1 AGGGTTTGGGGTTTTGATTTTAGGATTTTAAAGATTTAAAGTTTAGATTTTAAGGTTTCA
*
7417465 AGAGTTTAGGGG-TTTGATTTTA
1 AGGGTTT-GGGGTTTTGATTTTA
7417487 AGGTTTGAGG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
60 67 0.94
61 4 0.06
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (60 bp):
AGGGTTTGGGGTTTTGATTTTAGGATTTTAAAGATTTAAAGTTTAGATTTTAAGGTTTCA
Found at i:7417500 original size:14 final size:13
Alignment explanation
Indices: 7417439--7417506 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 13
7417429 ATTTTAAGGA
*
7417439 TTTAAGGTTTTGAT
1 TTTAAGG-TTTGAG
7417453 TTTAAGGTTTGAAGAG
1 TTTAAGGTTT---GAG
* *
7417469 TTTAGGGGTTTGAT
1 TTTA-AGGTTTGAG
7417483 TTTAAGGTTTGAGG
1 TTTAAGGTTTGA-G
7417497 TTTAAGGTTT
1 TTTAAGGTTT
7417507 AAAGAAAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 10 0.23
14 23 0.52
16 6 0.14
17 5 0.11
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (13 bp):
TTTAAGGTTTGAG
Found at i:7417998 original size:9 final size:10
Alignment explanation
Indices: 7417977--7418002 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7417967 AAATAATATC
7417977 AAAATTTTAA
1 AAAATTTTAA
7417987 AAAATTTTAA
1 AAAATTTTAA
7417997 AAAATT
1 AAAATT
7418003 ACCTGACTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:7418677 original size:24 final size:24
Alignment explanation
Indices: 7418650--7418733 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 24
7418640 TATCGTTTAA
*
7418650 GTGTAGGAGAGCTTGGGTTTCTGG
1 GTGTAGGAGAGCTAGGGTTTCTGG
*
7418674 GTGT-GG-GAGCTGGGGTTTCCTGG
1 GTGTAGGAGAGCTAGGGTTT-CTGG
*
7418697 GTGTGGGAGAGCTAGGGTTTCTGG
1 GTGTAGGAGAGCTAGGGTTTCTGG
7418721 GTGTA--AGAGCTAG
1 GTGTAGGAGAGCTAG
7418734 TCTAGCACAA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
22 19 0.35
23 10 0.19
24 14 0.26
25 11 0.20
ACGTcount: A:0.13, C:0.10, G:0.48, T:0.30
Consensus pattern (24 bp):
GTGTAGGAGAGCTAGGGTTTCTGG
Found at i:7418700 original size:23 final size:24
Alignment explanation
Indices: 7418650--7418724 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
7418640 TATCGTTTAA
* *
7418650 GTGTAGGAGAGCTTGGGTTTCTGG
1 GTGTGGGAGAGCTAGGGTTTCTGG
*
7418674 GTGT-GG-GAGCTGGGGTTTCCTGG
1 GTGTGGGAGAGCTAGGGTTT-CTGG
7418697 GTGTGGGAGAGCTAGGGTTTCTGG
1 GTGTGGGAGAGCTAGGGTTTCTGG
7418721 GTGT
1 GTGT
7418725 AAGAGCTAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.24
23 10 0.22
24 14 0.30
25 11 0.24
ACGTcount: A:0.09, C:0.09, G:0.49, T:0.32
Consensus pattern (24 bp):
GTGTGGGAGAGCTAGGGTTTCTGG
Found at i:7419594 original size:33 final size:34
Alignment explanation
Indices: 7419524--7419606 Score: 111
Period size: 33 Copynumber: 2.5 Consensus size: 34
7419514 AAAAGCCAAA
*
7419524 TAAACTGGGTTTAA-A-TTTCATTGAGGGCCAGC
1 TAAACTGGGCTTAAGATTTTCATTGAGGGCCAGC
*
7419556 TAAACTGGGCTTAAGATTTTC-TTGAGGGCTAGAC
1 TAAACTGGGCTTAAGATTTTCATTGAGGGCCAG-C
7419590 -AAACTGGGCTTAAGATT
1 TAAACTGGGCTTAAGATT
7419607 ATGGGCCAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
32 13 0.28
33 28 0.61
34 5 0.11
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (34 bp):
TAAACTGGGCTTAAGATTTTCATTGAGGGCCAGC
Found at i:7419934 original size:23 final size:23
Alignment explanation
Indices: 7419875--7419962 Score: 76
Period size: 22 Copynumber: 4.0 Consensus size: 23
7419865 ACTTTTTCAA
*
7419875 CTAATCCGAGCTTA-TGTGCCAG
1 CTAATCTGAGCTTATTGTGCCAG
**
7419897 CTAATCTGAATTTATTGTGCCAG
1 CTAATCTGAGCTTATTGTGCCAG
* *
7419920 CTAAAT-TGAGCTTA-TGTACCAT
1 CT-AATCTGAGCTTATTGTGCCAG
* *
7419942 CTAATATGGGCTTA-TGTGCCA
1 CTAATCTGAGCTTATTGTGCCA
7419963 ACTATACTGG
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.06
22 32 0.59
23 16 0.30
24 3 0.06
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (23 bp):
CTAATCTGAGCTTATTGTGCCAG
Found at i:7419954 original size:22 final size:22
Alignment explanation
Indices: 7419929--7419977 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7419919 GCTAAATTGA
*
7419929 GCTTATGTACCATCTAATA-TGG
1 GCTTATGTACCAACT-ATACTGG
*
7419951 GCTTATGTGCCAACTATACTGG
1 GCTTATGTACCAACTATACTGG
7419973 GCTTA
1 GCTTA
7419978 ACTTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (22 bp):
GCTTATGTACCAACTATACTGG
Found at i:7420967 original size:44 final size:43
Alignment explanation
Indices: 7420919--7421006 Score: 115
Period size: 42 Copynumber: 2.0 Consensus size: 43
7420909 TTTCTTATGG
7420919 TTTCCACCCATTCATTTCTTTTTTTTTTTTTCTTTT-ATTCTTTC
1 TTTCCACCCATT--TTTCTTTTTTTTTTTTTCTTTTCATTCTTTC
***
7420963 TTTCCTTTCATTTTTCTTTTTTTTTTTTTCTTTTGCATTCTTTC
1 TTTCCACCCATTTTTCTTTTTTTTTTTTTCTTTT-CATTCTTTC
7421007 ATTAAATGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 22 0.56
44 17 0.44
ACGTcount: A:0.07, C:0.20, G:0.01, T:0.72
Consensus pattern (43 bp):
TTTCCACCCATTTTTCTTTTTTTTTTTTTCTTTTCATTCTTTC
Found at i:7427349 original size:28 final size:28
Alignment explanation
Indices: 7427308--7427475 Score: 113
Period size: 30 Copynumber: 5.8 Consensus size: 28
7427298 AAGGTTTTAT
*
7427308 AAGGTTTATGGTTTCGATTTTAAGGTTC
1 AAGGTTTAGGGTTTCGATTTTAAGGTTC
* * ** * *
7427336 CAGATTTAGGGTTTTAATTTTAGGGTTTGA
1 AAGGTTTAGGGTTTCGATTTTAAGG-TT-C
* *
7427366 AAGGTTTAGGATTTCGATTTTAAAGTTC
1 AAGGTTTAGGGTTTCGATTTTAAGGTTC
** * *
7427394 AAGGTTTAGGGTTTTAATTTTAGGGTTTG
1 AAGGTTTAGGGTTTCGATTTTAAGG-TTC
* * *
7427423 AGGGGTTTAGGGTTT-TAGTTTTAAGGTTTG
1 A-AGGTTTAGGGTTTCGA-TTTTAAGG-TTC
*
7427453 AAGGGTTTAGGGTTTTGATTTTA
1 AA-GGTTTAGGGTTTCGATTTTA
7427476 GGATTTGGGG
Statistics
Matches: 107, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
28 39 0.36
29 8 0.07
30 59 0.55
31 1 0.01
ACGTcount: A:0.22, C:0.03, G:0.29, T:0.46
Consensus pattern (28 bp):
AAGGTTTAGGGTTTCGATTTTAAGGTTC
Found at i:7427386 original size:30 final size:30
Alignment explanation
Indices: 7427340--7427815 Score: 377
Period size: 30 Copynumber: 15.8 Consensus size: 30
7427330 AGGTTCCAGA
*
7427340 TTTAGGGTTTTAATTTTAGGGTTTGAAAGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* * ** *
7427370 TTTAGGATTTCGATTTTAAAG-TT-CAAGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* **
7427398 TTTAGGGTTTTAATTTTAGGGTTTGAGGGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* *
7427428 TTTAGGGTTTT-AGTTTTAAGGTTTGAAGGG
1 TTTAGGGTTTTGA-TTTTAGGGTTTGAAAGG
* *
7427458 TTTAGGGTTTTGATTTTAGGATTTG--GGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* *
7427486 TTTATGGTTTTAATTTTAGGGTTT-AAAGGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAA-GG
* **
7427516 TTTAGGGGTTT-AGTTTTAGGGTTTGGAGTTCAATT
1 TTTAGGGTTTTGA-TTTTAGGGTTT-GA----AAGG
* * *
7427551 TTTA-GTTTTTAGGGTTTCAAGGGTTTGAAAGG
1 TTTAGGGTTTT--GATTT-TAGGGTTTGAAAGG
* * *
7427583 TTTAGGGCTTCGATTTTAGGGTTTGGAAGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
*
7427613 TTTAGGATTTTGATTTTAGGGTTTG-AA-G
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
7427641 TTTAGGGTTTTGATTTTAGGGTTT-AAAGGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAA-GG
* * *
7427671 TATAAGGTTTTAATTTTAGGGTTT-AAAGGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAA-GG
*
7427701 TTTAGGGTTTTGATTTT-GGGATTT-TAAGG
1 TTTAGGGTTTTGATTTTAGGG-TTTGAAAGG
* * * * *
7427730 ATTTAGGATTTAGATTTTATGGTTTCAAGGG
1 -TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* *
7427761 TTTGGGGTTTTGATTTTAAGGTTTGAAAGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
* *
7427791 TTTAAGATTTTGATTTTAGGGTTTG
1 TTTAGGGTTTTGATTTTAGGGTTTG
7427816 GAGAGTTTAA
Statistics
Matches: 356, Mismatches: 64, Indels: 52
0.75 0.14 0.11
Matches are distributed among these distances:
28 70 0.20
29 13 0.04
30 231 0.65
31 10 0.03
32 7 0.02
33 3 0.01
34 4 0.01
35 4 0.01
36 7 0.02
37 7 0.02
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.47
Consensus pattern (30 bp):
TTTAGGGTTTTGATTTTAGGGTTTGAAAGG
Found at i:7427426 original size:8 final size:7
Alignment explanation
Indices: 7427412--7427539 Score: 55
Period size: 7 Copynumber: 17.4 Consensus size: 7
7427402 GGGTTTTAAT
7427412 TTTAGGG
1 TTTAGGG
7427419 TTTGAGGGG
1 TTT-A-GGG
7427428 TTTAGGG
1 TTTAGGG
*
7427435 TTTTA-GT
1 -TTTAGGG
*
7427442 TTTAAGG
1 TTTAGGG
7427449 TTTGAAGGG
1 TTT--AGGG
7427458 TTTAGGG
1 TTTAGGG
* **
7427465 TTTTGAT
1 TTTAGGG
*
7427472 TTTAGGA
1 TTTAGGG
*
7427479 TTTGGGG
1 TTTAGGG
*
7427486 TTTATGGT
1 TTTA-GGG
**
7427494 TTTA-AT
1 TTTAGGG
7427500 TTTAGGG
1 TTTAGGG
7427507 TTTAAAGGG
1 TTT--AGGG
7427516 TTTAGGGG
1 TTTA-GGG
*
7427524 TTTA-GT
1 TTTAGGG
7427530 TTTAGGG
1 TTTAGGG
7427537 TTT
1 TTT
7427540 GGAGTTCAAT
Statistics
Matches: 91, Mismatches: 18, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
6 14 0.15
7 39 0.43
8 19 0.21
9 19 0.21
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:7427445 original size:88 final size:89
Alignment explanation
Indices: 7427340--7427815 Score: 389
Period size: 88 Copynumber: 5.3 Consensus size: 89
7427330 AGGTTCCAGA
* * * *
7427340 TTTAGGGTTTTAATTTTAGGGTTTGAAAGGTTTAGGATTTCGATTTTAAAG-TTCAAGGTTTAGG
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAAGGTTTAAAGGTTTAGG
*
7427404 GTTTTAATTTTAGGGTTTGAGGGG
66 GTTTTAATTTTAGGGTTTGAAGGG
* * * **
7427428 TTTAGGGTTTT-AGTTTTAAGGTTTGAAGGGTTTAGGGTTTTGATTTT-AGGATTT-GGGGTTTA
1 TTTAGGGTTTTGA-TTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAAGG-TTTAAAGGTTTA
* *
7427490 TGGTTTTAATTTTAGGGTTTAAAGGG
64 GGGTTTTAATTTTAGGGTTTGAAGGG
* ** * * *
7427516 TTTAGGGGTTT-AGTTTTAGGGTTTGGAGTTCAATTTTTA-GTTTTTAGGGTTTCAAGGGTTTGA
1 TTTAGGGTTTTGA-TTTTAGGGTTT-GA----AAGGTTTAGGATTTT--GATTTTAA-GGTTT-A
* **
7427579 AAGGTTTAGGGCTTCGATTTTAGGGTTTGGAA-GG
56 AAGGTTTAGGGTTTTAATTTTAGGGTTT-GAAGGG
* * * * *
7427613 TTTAGGATTTTGATTTTAGGGTTTG-AA-GTTTAGGGTTTTGATTTTAGGGTTTAAAGGGTATAA
1 TTTAGGGTTTTGATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAAGGTTTAAA-GGTTTAG
*
7427676 GGTTTTAATTTTAGGGTTTAAAGGG
65 GGTTTTAATTTTAGGGTTTGAAGGG
* * * *
7427701 TTTAGGGTTTTGATTTT-GGGATTT-TAAGGATTTAGGATTTAGATTTTATGGTTTCAAGGGTTT
1 TTTAGGGTTTTGATTTTAGGG-TTTGAAAGG-TTTAGGATTTTGATTTTAAGGTTT-AAAGGTTT
* * * *
7427764 GGGGTTTTGATTTTAAGGTTTGAAAGG
63 AGGGTTTTAATTTTAGGGTTTGAAGGG
* *
7427791 TTTAAGATTTTGATTTTAGGGTTTG
1 TTTAGGGTTTTGATTTTAGGGTTTG
7427816 GAGAGTTTAA
Statistics
Matches: 310, Mismatches: 52, Indels: 49
0.75 0.13 0.12
Matches are distributed among these distances:
87 11 0.04
88 141 0.45
89 10 0.03
90 68 0.22
91 12 0.04
92 5 0.02
93 5 0.02
94 4 0.01
95 4 0.01
96 3 0.01
97 44 0.14
98 3 0.01
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.47
Consensus pattern (89 bp):
TTTAGGGTTTTGATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAAGGTTTAAAGGTTTAGG
GTTTTAATTTTAGGGTTTGAAGGG
Found at i:7427631 original size:155 final size:155
Alignment explanation
Indices: 7427415--7427694 Score: 393
Period size: 155 Copynumber: 1.8 Consensus size: 155
7427405 TTTTAATTTT
** ** *
7427415 AGGGTTTGAGGGGTTTAGGGTTTTAGTTTTAAGGTTTGAAGGGTTTAGGGTTTTGATTTTAGGAT
1 AGGGTTTGAAAGGTTTAGGGTTCGAGTTTTAAGGTTTGAAGGGTTTAGGATTTTGATTTTAGGAT
** * * * *
7427480 TTGGGGTTTATGGTTTTAATTTTAGGGTTTAAAGGGTTTAGGGGTTTAGTTTTAGGGTTTGGAGT
66 TTGAAGTTTAGGGTTTTAATTTTAGGGTTTAAAGGGTATAAGGGTTTAATTTTAGGGTTTGGAGT
7427545 TCAATTTTTAGTTTTTAGGGTTTCA
131 TCAATTTTTAGTTTTTAGGGTTTCA
*
7427570 AGGGTTTGAAAGGTTTAGGGCTTCGA-TTTTAGGGTTTGGAA-GGTTTAGGATTTTGATTTTAGG
1 AGGGTTTGAAAGGTTTAGGG-TTCGAGTTTTAAGGTTT-GAAGGGTTTAGGATTTTGATTTTAGG
* * *
7427633 GTTTGAAGTTTAGGGTTTTGATTTTAGGGTTTAAAGGGTATAAGGTTTTAATTTTAGGGTTT
64 ATTTGAAGTTTAGGGTTTTAATTTTAGGGTTTAAAGGGTATAAGGGTTTAATTTTAGGGTTT
7427695 AAAGGGTTTA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
155 102 0.94
156 6 0.06
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (155 bp):
AGGGTTTGAAAGGTTTAGGGTTCGAGTTTTAAGGTTTGAAGGGTTTAGGATTTTGATTTTAGGAT
TTGAAGTTTAGGGTTTTAATTTTAGGGTTTAAAGGGTATAAGGGTTTAATTTTAGGGTTTGGAGT
TCAATTTTTAGTTTTTAGGGTTTCA
Found at i:7427661 original size:14 final size:14
Alignment explanation
Indices: 7427583--7427664 Score: 76
Period size: 14 Copynumber: 5.7 Consensus size: 14
7427573 GTTTGAAAGG
* *
7427583 TTTAGGGCTTCGAT
1 TTTAGGGTTTTGAT
* *
7427597 TTTAGGGTTTGGAAGG
1 TTTAGGGTTTTG-A-T
*
7427613 TTTAGGATTTTGAT
1 TTTAGGGTTTTGAT
*
7427627 TTTAGGG-TTTGAAG
1 TTTAGGGTTTTG-AT
7427641 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
7427655 TTTAGGGTTT
1 TTTAGGGTTT
7427665 AAAGGGTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
13 4 0.07
14 35 0.64
15 6 0.11
16 10 0.18
ACGTcount: A:0.17, C:0.02, G:0.32, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:7427706 original size:16 final size:16
Alignment explanation
Indices: 7427655--7427710 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
7427645 GGGTTTTGAT
7427655 TTTAGGGTTTAAAGGG
1 TTTAGGGTTTAAAGGG
* * * *
7427671 TATAAGGTTTTAA--T
1 TTTAGGGTTTAAAGGG
7427685 TTTAGGGTTTAAAGGG
1 TTTAGGGTTTAAAGGG
7427701 TTTAGGGTTT
1 TTTAGGGTTT
7427711 TGATTTTGGG
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
14 10 0.33
16 20 0.67
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (16 bp):
TTTAGGGTTTAAAGGG
Found at i:7427771 original size:90 final size:88
Alignment explanation
Indices: 7427595--7427858 Score: 277
Period size: 90 Copynumber: 3.0 Consensus size: 88
7427585 TAGGGCTTCG
* * *
7427595 ATTTTAGGGTTTGGAAGGTTTAGGATTTTGATTTTAGGGTTTGAAGTTTAGGGTTTTGATTTTAG
1 ATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAGGGTTTGAAGTTTAGGATTTAGATTTTAG
7427660 GGTTTAAAGGGTATAAGGTTTTA
66 GGTTTAAAGGGTATAAGGTTTTA
* *
7427683 ATTTTAGGGTTT-AAAGGGTTTAGGGTTTTGATTTT-GGGATTTTAAGGATTTAGGATTTAGATT
1 ATTTTAGGGTTTGAAA-GGTTTAGGATTTTGATTTTAGGG-TTTGAA-G-TTTAGGATTTAGATT
* * * ** *
7427746 TTATGGTTTCAAGGGTTTGGGGTTTTG
62 TTAGGGTTTAAAGGGTATAAGGTTTTA
* * * *
7427773 ATTTTAAGGTTTGAAAGGTTTAAGATTTTGATTTTAGGGTTTGGAGAGTTTAAGGGTTCA-ATTT
1 ATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAGGGTTT-GA-AGTTT-AGGATTTAGATTT
* *
7427837 TAAGGTTT--AGGGTTTAAGGTTT
63 TAGGGTTTAAAGGGTATAAGGTTT
7427859 ATAGAAAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
87 5 0.03
88 47 0.32
89 1 0.01
90 79 0.54
91 14 0.10
92 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (88 bp):
ATTTTAGGGTTTGAAAGGTTTAGGATTTTGATTTTAGGGTTTGAAGTTTAGGATTTAGATTTTAG
GGTTTAAAGGGTATAAGGTTTTA
Found at i:7427844 original size:60 final size:58
Alignment explanation
Indices: 7427308--7427830 Score: 308
Period size: 58 Copynumber: 8.7 Consensus size: 58
7427298 AAGGTTTTAT
* * * * ** *
7427308 AAGGTTTATGGTTTCGATTTTAAGGTTCCAGA-TTTAGGGTTTTAATTTTAGGGTTTGA
1 AAGGTTTAAGATTTTGATTTTAGGGTTTAAGAGTTTAGGGTTTTGATTTTAGGGTTT-A
* * ** * *
7427366 AAGGTTTAGGATTTCGATTTTAAAGTTCAAG-GTTTAGGGTTTTAATTTTAGGGTTTGA
1 AAGGTTTAAGATTTTGATTTTAGGGTTTAAGAGTTTAGGGTTTTGATTTTAGGGTTT-A
** * * * * *
7427424 GGGGTTTAGGGTTTT-AGTTTTAAGGTTTGAAGGGTTTAGGGTTTTGATTTTAGGATTT-
1 AAGGTTTAAGATTTTGA-TTTTAGGGTTT-AAGAGTTTAGGGTTTTGATTTTAGGGTTTA
** * * * * * *
7427482 GGGGTTTATGGTTTTAATTTTAGGGTTTAAAGGGTTTAGGGGTTT-AGTTTTAGGGTTTG
1 AAGGTTTAAGATTTTGATTTTAGGGTTT-AAGAGTTTAGGGTTTTGA-TTTTAGGGTTTA
* * * * * *
7427541 GA-GTTCAA-TTTTTAGTTTTTAGGGTTTCAAGGGTTTGAAAGGTTTAGGGCTTCGATTTTAGGG
1 AAGGTTTAAGATTTT-GATTTTAGGGTTT-AA------G--A-GTTTAGGGTTTTGATTTTAGGG
*
7427604 TTTGG
55 TTT-A
* *
7427609 AAGGTTTAGGATTTTGATTTTAGGGTTTGA-AGTTTAGGGTTTTGATTTTAGGGTTTA
1 AAGGTTTAAGATTTTGATTTTAGGGTTTAAGAGTTTAGGGTTTTGATTTTAGGGTTTA
* * * * *
7427666 AAGGGTATAAGGTTTTAATTTTAGGGTTTAAAGGGTTTAGGGTTTTGATTTT-GGGATTTT
1 AA-GGTTTAAGATTTTGATTTTAGGGTTT-AAGAGTTTAGGGTTTTGATTTTAGGG-TTTA
* * * * * *
7427726 AAGGATTTAGGATTTAGATTTTATGGTTTCAAGGGTTTGGGGTTTTGATTTTAAGGTTTGA
1 AAGG-TTTAAGATTTTGATTTTAGGGTTT-AAGAGTTTAGGGTTTTGATTTTAGGGTTT-A
*
7427787 AAGGTTTAAGATTTTGATTTTAGGGTTTGGAGAGTTTAAGGGTT
1 AAGGTTTAAGATTTTGATTTTAGGGTTT-AAGAGTTT-AGGGTT
7427831 CAATTTTAAG
Statistics
Matches: 376, Mismatches: 60, Indels: 55
0.77 0.12 0.11
Matches are distributed among these distances:
57 8 0.02
58 184 0.49
59 12 0.03
60 115 0.31
61 11 0.03
64 1 0.00
67 21 0.06
68 4 0.01
69 16 0.04
70 4 0.01
ACGTcount: A:0.21, C:0.02, G:0.30, T:0.46
Consensus pattern (58 bp):
AAGGTTTAAGATTTTGATTTTAGGGTTTAAGAGTTTAGGGTTTTGATTTTAGGGTTTA
Found at i:7428300 original size:3 final size:3
Alignment explanation
Indices: 7428292--7428317 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7428282 AATATGCATA
7428292 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7428318 ATTTAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7429382 original size:16 final size:18
Alignment explanation
Indices: 7429352--7429392 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
7429342 TTTTTTTATT
7429352 ATTATT-ATTATA-TTTA
1 ATTATTAATTATATTTTA
7429368 ATTATTAATTA-ATTTTA
1 ATTATTAATTATATTTTA
7429385 A-TATTAAT
1 ATTATTAAT
7429393 AAACAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTAATTATATTTTA
Found at i:7429668 original size:25 final size:24
Alignment explanation
Indices: 7429640--7429698 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
7429630 ATATTATATT
*
7429640 AATTTTGATTAATTATAATAAAAAA
1 AATTTTCA-TAATTATAATAAAAAA
*
7429665 AA-TTTCATAATTATAATTAAAAA
1 AATTTTCATAATTATAATAAAAAA
*
7429688 AATATT-ATAAT
1 AATTTTCATAAT
7429699 AATTTTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 22 0.73
24 6 0.20
25 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (24 bp):
AATTTTCATAATTATAATAAAAAA
Found at i:7429676 original size:23 final size:23
Alignment explanation
Indices: 7429649--7429698 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
7429639 TAATTTTGAT
7429649 TAATTATAATAAAAAAAAT-TTCA
1 TAATTATAATAAAAAAAATATT-A
*
7429672 TAATTATAATTAAAAAAATATTA
1 TAATTATAATAAAAAAAATATTA
7429695 TAAT
1 TAAT
7429699 AATTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
TAATTATAATAAAAAAAATATTA
Found at i:7429700 original size:26 final size:24
Alignment explanation
Indices: 7429649--7429708 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 24
7429639 TAATTTTGAT
*
7429649 TAATTATAA-TAAAAAAAATTTCA
1 TAATTATAATTAAAAAAAATTTAA
7429672 TAATTATAATTAAAAAAATATTATAA
1 TAATTATAATTAAAAAAA-ATT-TAA
*
7429698 TAATTTTAATT
1 TAATTATAATT
7429709 GATTACGGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 9 0.28
24 8 0.25
25 3 0.09
26 12 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATTATAATTAAAAAAAATTTAA
Found at i:7429929 original size:2 final size:2
Alignment explanation
Indices: 7429922--7429966 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
7429912 TTCTGAAGTA
* *
7429922 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7429964 AT A
1 AT A
7429967 ACATAAAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7430344 original size:25 final size:25
Alignment explanation
Indices: 7430314--7430373 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
7430304 TATTCATATA
7430314 ATTATTAAAATAT-TAAAAATTATTT
1 ATTATTAAAATATATAAAAATTA-TT
**
7430339 ATTATTAAAATATATTTAAATTATT
1 ATTATTAAAATATATAAAAATTATT
*
7430364 AATATTAAAA
1 ATTATTAAAA
7430374 AATTGTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 24 0.77
26 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATTAAAATATATAAAAATTATT
Found at i:7430354 original size:10 final size:9
Alignment explanation
Indices: 7430313--7430370 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
7430303 ATATTCATAT
7430313 AATTATTAA
1 AATTATTAA
7430322 AA-TATTAAA
1 AATTATT-AA
7430331 AATTATT--
1 AATTATTAA
*
7430338 TATTATTAA
1 AATTATTAA
*
7430347 AATATATTTA
1 AAT-TATTAA
7430357 AATTATTAA
1 AATTATTAA
*
7430366 TATTA
1 AATTA
7430371 AAAAATTGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
7 6 0.15
8 4 0.10
9 17 0.44
10 12 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
AATTATTAA
Found at i:7430464 original size:12 final size:14
Alignment explanation
Indices: 7430447--7430656 Score: 114
Period size: 15 Copynumber: 14.5 Consensus size: 14
7430437 TAAAACTATT
7430447 TATTATTT-TT-TA
1 TATTATTTATTATA
7430459 TATTATTTATTAATA
1 TATTATTTATT-ATA
7430474 TATTATTTATTA-A
1 TATTATTTATTATA
* *
7430487 TAATA-TTGTTATAA
1 TATTATTTATTAT-A
* *
7430501 TATTTATTAATTAAA
1 TA-TTATTTATTATA
7430516 CTAATCATATTTATTATA
1 -T-AT--TATTTATTATA
*
7430534 TTATT-TATTAATATAA
1 -TATTAT-TTATTAT-A
7430550 TATTATTTATTA-A
1 TATTATTTATTATA
* *
7430563 TAGTA--TATTATT
1 TATTATTTATTATA
*
7430575 TATTACTATATTATAA
1 TATTA-TTTATTAT-A
*
7430591 TATTATTTGTTAT-
1 TATTATTTATTATA
7430604 TATTATTTATTAATA
1 TATTATTTATT-ATA
*
7430619 TATTATATTAATAGTA
1 TATTAT-TTATTA-TA
7430635 TATTATTTATTTATA
1 TATTATTTA-TTATA
*
7430650 TAATATT
1 TATTATT
7430657 ACTTATTAAT
Statistics
Matches: 153, Mismatches: 21, Indels: 45
0.70 0.10 0.21
Matches are distributed among these distances:
11 5 0.03
12 17 0.11
13 22 0.14
14 7 0.05
15 62 0.41
16 27 0.18
17 3 0.02
18 10 0.07
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (14 bp):
TATTATTTATTATA
Found at i:7430490 original size:18 final size:18
Alignment explanation
Indices: 7430457--7430686 Score: 84
Period size: 18 Copynumber: 13.0 Consensus size: 18
7430447 TATTATTTTT
7430457 TATATTATTTA-T--TAA
1 TATATTATTTATTAATAA
7430472 TATATTATTTATTAATAA
1 TATATTATTTATTAATAA
7430490 TATTGTTATAATATTTATTAATTAA
1 TA----TAT--TATTTATTAA-TAA
*
7430515 -ACTAATCATATTTATT-ATAT
1 TA-T-AT--TATTTATTAATAA
*
7430535 TAT-TTA-TTAAT-ATAA
1 TATATTATTTATTAATAA
*
7430550 T--ATTATTTATTAATAG
1 TATATTATTTATTAATAA
*
7430566 TATATTATTTATTACT-A
1 TATATTATTTATTAATAA
* ** *
7430583 TATTATAATATTATTTGTTA
1 TA-TATTAT-TTATTAATAA
7430603 T-TATTATTTA-T--TAA
1 TATATTATTTATTAATAA
*
7430617 TATATTA--TATTAATAG
1 TATATTATTTATTAATAA
*
7430633 TATATTATTTATTTAT-A
1 TATATTATTTATTAATAA
*
7430650 TAATATTACTTATTAAT-A
1 T-ATATTATTTATTAATAA
*
7430668 TAATATTATTTATAAATAA
1 T-ATATTATTTATTAATAA
7430687 AATTATATTC
Statistics
Matches: 166, Mismatches: 21, Indels: 52
0.69 0.09 0.22
Matches are distributed among these distances:
13 2 0.01
14 7 0.04
15 28 0.17
16 17 0.10
17 6 0.04
18 63 0.38
19 7 0.04
20 5 0.03
21 3 0.02
22 14 0.08
24 11 0.07
25 3 0.02
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (18 bp):
TATATTATTTATTAATAA
Found at i:7430576 original size:36 final size:37
Alignment explanation
Indices: 7430457--7430695 Score: 174
Period size: 36 Copynumber: 6.8 Consensus size: 37
7430447 TATTATTTTT
* *
7430457 TATATTATTTATTAATATATTATT-TATTAATAATATTG
1 TATATTATTTATTAATATAATATTATATTATTAATA--G
* * *
7430495 TTATAATATTTATTAAT-TAA-ACTA-ATCATATT--TAT
1 -TATATTATTTATTAATATAATATTATAT--TATTAATAG
7430530 TATATTATTTATTAATATAATATTAT-TTATTAATAG
1 TATATTATTTATTAATATAATATTATATTATTAATAG
* * *
7430566 TATATTATTTATTACTATATTATAATATTATT--T-G
1 TATATTATTTATTAATATAATATTATATTATTAATAG
*
7430600 T-TATTA-TTATTTAT-TAATA-TAT-TATATTAATAG
1 TATATTATTTATTAATATAATATTATAT-TATTAATAG
* *
7430633 TATATTATTTATTTATATAATATTA-CTTATTAATA-
1 TATATTATTTATTAATATAATATTATATTATTAATAG
*
7430668 TAATATTATTTA-TAA-ATAAAATTATATT
1 T-ATATTATTTATTAATATAATATTATATT
7430696 CAAATTATTG
Statistics
Matches: 162, Mismatches: 18, Indels: 44
0.72 0.08 0.20
Matches are distributed among these distances:
29 1 0.01
30 6 0.04
31 4 0.02
32 7 0.04
33 7 0.04
34 34 0.21
35 17 0.10
36 52 0.32
37 14 0.09
38 2 0.01
39 18 0.11
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (37 bp):
TATATTATTTATTAATATAATATTATATTATTAATAG
Found at i:7430721 original size:25 final size:26
Alignment explanation
Indices: 7430672--7430722 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
7430662 TTAATATAAT
*
7430672 ATTATTTATAAATAAAATTATATTCAA
1 ATTATTGATAAAT-AAATTATATTCAA
7430699 ATTATTGATAAAT-AATTATATTCA
1 ATTATTGATAAATAAATTATATTCA
7430723 TAGATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.48
27 12 0.52
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
ATTATTGATAAATAAATTATATTCAA
Found at i:7434010 original size:9 final size:8
Alignment explanation
Indices: 7433985--7434009 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7433975 GTAAGTAATA
7433985 TAATTTTT
1 TAATTTTT
7433993 TAATTTTT
1 TAATTTTT
7434001 TAATTTTT
1 TAATTTTT
7434009 T
1 T
7434010 TTGTCGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TAATTTTT
Found at i:7438522 original size:31 final size:31
Alignment explanation
Indices: 7438484--7438546 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
7438474 GTATATTATT
* * *
7438484 AATAAATTAAATAATATTATCTTATTAATAA
1 AATAAATTAAATAATATCATATTATCAATAA
*
7438515 AATAAATTAGATAATATCATATTATCAATAA
1 AATAAATTAAATAATATCATATTATCAATAA
7438546 A
1 A
7438547 TAATTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (31 bp):
AATAAATTAAATAATATCATATTATCAATAA
Found at i:7446559 original size:25 final size:25
Alignment explanation
Indices: 7446513--7446560 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7446503 ATGCTTAGAC
* *
7446513 ACACCCTTCAACAAACCTTTCAAAA
1 ACACCATTCAACAAACCATTCAAAA
* *
7446538 ACACCATTCAGCAAATCATTCAA
1 ACACCATTCAACAAACCATTCAA
7446561 CATACAATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.21
Consensus pattern (25 bp):
ACACCATTCAACAAACCATTCAAAA
Found at i:7447604 original size:186 final size:186
Alignment explanation
Indices: 7447372--7447770 Score: 552
Period size: 186 Copynumber: 2.1 Consensus size: 186
7447362 TCCTTAATAT
*
7447372 TATTGAAGGCGTTTTATACTAAAAGATGCCTTTAATAATATCAAAAATTTTAAAAAAAAATTATT
1 TATTGAAGGCGTTTTATACTAAAAGAAGCCTTTAATAATATCAAAAATTTTAAAAAAAAATTATT
* *
7447437 GAAGGCGTTTATTCTCAAAAAATACCTTAAATAATTACGTACAAAAATTAAAATGAATTAGTGAA
66 AAAGGCGTTTATTCTCAAAAAATACCTTAAATAATTACGTACAAAAATTAAAAGGAATTAGTGAA
***
7447502 GGCATTTTTCTAGAATAAA-TGTTTTCACTAACCGTATTAAAATTTAAGTAGT-AGAA
131 GGCATTTTTCTAGAATAAACACCTTT-ACTAACCGTATTAAAATTTAAGTAGTGA-AA
* * *
7447558 TATTGAAGGTGTTTT-TCACTGAAAGAAGCCTTTAATAATCTCAAAAATTTTAAAAAAAAATTAT
1 TATTGAAGGCGTTTTAT-ACTAAAAGAAGCCTTTAATAATATCAAAAATTTTAAAAAAAAATTAT
* * * * *
7447622 TAAAGGCGTTTGTTCTTAAAAAATACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTGA
65 TAAAGGCGTTTATTCTCAAAAAATACCTTAAATAATTACGTACAAAAATTAAAAGGAATTAGTGA
** *
7447687 AGGTGTTTTTCTAGAATAAACACCTTTACTAACCGTTTTAAAATTTAAGTAGTGAAA
130 AGGCATTTTTCTAGAATAAACACCTTTACTAACCGTATTAAAATTTAAGTAGTGAAA
* * * *
7447744 TATTTAAAGGCATTTTGTACTAGAAGA
1 TA-TTGAAGGCGTTTTATACTAAAAGA
7447771 CACCTTCAAT
Statistics
Matches: 186, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
185 1 0.01
186 163 0.88
187 21 0.11
188 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (186 bp):
TATTGAAGGCGTTTTATACTAAAAGAAGCCTTTAATAATATCAAAAATTTTAAAAAAAAATTATT
AAAGGCGTTTATTCTCAAAAAATACCTTAAATAATTACGTACAAAAATTAAAAGGAATTAGTGAA
GGCATTTTTCTAGAATAAACACCTTTACTAACCGTATTAAAATTTAAGTAGTGAAA
Done.