Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 34 of 84
Found at i:7867758 original size:23 final size:23
Alignment explanation
Indices: 7867722--7867765 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7867712 TTGAAACAAG
*
7867722 TTTCATCGACTGATCATCATTAT
1 TTTCATCGACTGATCACCATTAT
7867745 TTTCATC-ACTTGATCACCATT
1 TTTCATCGAC-TGATCACCATT
7867766 CATAAGCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.25, C:0.25, G:0.07, T:0.43
Consensus pattern (23 bp):
TTTCATCGACTGATCACCATTAT
Found at i:7868650 original size:9 final size:9
Alignment explanation
Indices: 7868638--7868689 Score: 70
Period size: 9 Copynumber: 5.6 Consensus size: 9
7868628 TTTTTCTTTC
7868638 TTTTTTCATTT
1 TTTTTTCA--T
7868649 TTTTTTCA-
1 TTTTTTCAT
7868657 TTTTTTCAT
1 TTTTTTCAT
7868666 TTTTTTCATT
1 TTTTTTCA-T
7868676 TTTTTTCAT
1 TTTTTTCAT
7868685 TTTTT
1 TTTTT
7868690 CTTCATTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.21
9 14 0.36
10 9 0.23
11 8 0.21
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:7868651 original size:19 final size:19
Alignment explanation
Indices: 7868627--7868709 Score: 93
Period size: 19 Copynumber: 4.4 Consensus size: 19
7868617 TAATTTGAGT
7868627 TTTTTTCTTTCTTTTTTCA
1 TTTTTTCTTTCTTTTTTCA
7868646 TTTTTT-TTTCATTTTTTCA
1 TTTTTTCTTTC-TTTTTTCA
*
7868665 TTTTTTTCATT-TTTTTTCA
1 -TTTTTTCTTTCTTTTTTCA
*
7868684 TTTTTTC-TTC-ATTTTCA
1 TTTTTTCTTTCTTTTTTCA
7868701 TCTTTTTCT
1 T-TTTTTCT
7868710 ATCCATTAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
17 9 0.16
18 17 0.30
19 22 0.39
20 6 0.11
21 2 0.04
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTCTTTCTTTTTTCA
Found at i:7868668 original size:27 final size:26
Alignment explanation
Indices: 7868634--7868707 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 26
7868624 AGTTTTTTTC
7868634 TTTCTTTTTTCATTTTTTTTTCATTT
1 TTTCTTTTTTCATTTTTTTTTCATTT
7868660 TTTCATTTTTTTCA-TTTTTTTTCATTT
1 TTTC--TTTTTTCATTTTTTTTTCATTT
*
7868687 TTTCTTCATTTTCATCTTTTT
1 TTTCTT--TTTTCATTTTTTT
7868708 CTATCCATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
25 2 0.05
26 4 0.10
27 23 0.55
28 13 0.31
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTCTTTTTTCATTTTTTTTTCATTT
Found at i:7868694 original size:11 final size:10
Alignment explanation
Indices: 7868626--7868698 Score: 89
Period size: 11 Copynumber: 7.3 Consensus size: 10
7868616 TTAATTTGAG
*
7868626 TTTTTTTCTT
1 TTTTTTTCAT
7868636 TCTTTTTTCATT
1 T-TTTTTTCA-T
7868648 TTTTTTTCA-
1 TTTTTTTCAT
7868657 -TTTTTTCA-
1 TTTTTTTCAT
7868665 TTTTTTTCAT
1 TTTTTTTCAT
7868675 TTTTTTTCAT
1 TTTTTTTCAT
7868685 TTTTTCTTCAT
1 TTTTT-TTCAT
7868696 TTT
1 TTT
7868699 CATCTTTTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
8 8 0.14
9 8 0.14
10 16 0.28
11 23 0.40
12 2 0.04
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTTCAT
Found at i:7868707 original size:38 final size:39
Alignment explanation
Indices: 7868626--7868707 Score: 114
Period size: 38 Copynumber: 2.1 Consensus size: 39
7868616 TTAATTTGAG
* * *
7868626 TTTTTTTCTTTCTTTTTTCATTTTTTTTTCATTTTTTCA
1 TTTTTTTCATTCTTTTTTCATTTTTTCTTCATTTTATCA
7868665 TTTTTTTCATT-TTTTTTCATTTTTTCTTCATTTTCATC-
1 TTTTTTTCATTCTTTTTTCATTTTTTCTTCATTTT-ATCA
7868703 TTTTT
1 TTTTT
7868708 CTATCCATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 27 0.69
39 12 0.31
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (39 bp):
TTTTTTTCATTCTTTTTTCATTTTTTCTTCATTTTATCA
Found at i:7870955 original size:61 final size:63
Alignment explanation
Indices: 7870851--7870969 Score: 161
Period size: 61 Copynumber: 1.9 Consensus size: 63
7870841 TTAGAAATAT
* *
7870851 TCTCTTTTTTAATTTTTAAATTTTTCACCATTTAAGCCTATTTA-AAA-ATTCTCTTTATTTC
1 TCTCTTTTTTAATTTCTAAATTTTTCACCATTTAAGCCAATTTAGAAATATTCTCTTTATTTC
* ** * *
7870912 TCTCTTTTTTTATTTCTAAATTTTTCACCATTTGGGTCAATTTAGAAATATTTTCTTT
1 TCTCTTTTTTAATTTCTAAATTTTTCACCATTTAAGCCAATTTAGAAATATTCTCTTT
7870970 TTTAGAATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
61 38 0.78
62 3 0.06
63 8 0.16
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.56
Consensus pattern (63 bp):
TCTCTTTTTTAATTTCTAAATTTTTCACCATTTAAGCCAATTTAGAAATATTCTCTTTATTTC
Found at i:7871022 original size:114 final size:111
Alignment explanation
Indices: 7870817--7871034 Score: 296
Period size: 114 Copynumber: 1.9 Consensus size: 111
7870807 AAATATATAT
*
7870817 AATTATTTCACCATTTGGGCCAAATTAGAAATATTCTCTTTTTTAATTTTTAAATTTTTCACCAT
1 AATTATTTCACCATTTGGGCCAAATTAGAAATATTCTCTTTTTTAATTTCTAAATTTTTCACCAT
*
7870882 TTAAGCCTATTTAAAAATTCTCTTTATTTCTCTCTTTTTTTATTTCTA
66 TTAAGCCCATTTAAAAATTCTCTTTATTTCT-T-TTTTTTTATTTCTA
* * *
7870930 AATT-TTTCACCATTTGGGTCAATTTAGAAATATTTTCTTTTTTAGAATTTCTAAATTTTTCACC
1 AATTATTTCACCATTTGGGCCAAATTAGAAATATTCTCTTTTTT--AATTTCTAAATTTTTCACC
* * * *
7870994 ATTT-GGACCCATTTAGAAATTTTTTTTATTTCTTTTTTTTT
64 ATTTAAG-CCCATTTAAAAATTCTCTTTATTTCTTTTTTTTT
7871035 GAAAAAAATA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
112 43 0.46
113 6 0.06
114 44 0.47
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (111 bp):
AATTATTTCACCATTTGGGCCAAATTAGAAATATTCTCTTTTTTAATTTCTAAATTTTTCACCAT
TTAAGCCCATTTAAAAATTCTCTTTATTTCTTTTTTTTTATTTCTA
Found at i:7872290 original size:8 final size:9
Alignment explanation
Indices: 7872271--7872301 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7872261 TTTTTCCCAC
*
7872271 TTTTCTATT
1 TTTTTTATT
7872280 TTTTTTATT
1 TTTTTTATT
7872289 TTTTTTATT
1 TTTTTTATT
7872298 TTTT
1 TTTT
7872302 CATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTATT
Found at i:7873793 original size:28 final size:28
Alignment explanation
Indices: 7873733--7873790 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
7873723 ATCATGTGTG
**
7873733 AATAATTTTTATTCTCAATTTTTTTAAT
1 AATAATTTTTATTCTCAATCATTTTAAT
7873761 AATAATTTTTATTCTCAACTCATTTTAAT
1 AATAATTTTTATTCTCAA-TCATTTTAAT
7873790 A
1 A
7873791 TAAGTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (28 bp):
AATAATTTTTATTCTCAATCATTTTAAT
Found at i:7878066 original size:16 final size:16
Alignment explanation
Indices: 7878045--7878076 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7878035 AAGCTTGCCC
7878045 AACATTTAGTATAATT
1 AACATTTAGTATAATT
7878061 AACATTTAGTATAATT
1 AACATTTAGTATAATT
7878077 TGATAGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
AACATTTAGTATAATT
Found at i:7879777 original size:17 final size:17
Alignment explanation
Indices: 7879748--7879780 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7879738 CATTAAATTA
7879748 AATATTAAGATATTTTT
1 AATATTAAGATATTTTT
7879765 AATATCTAA-ATATTTT
1 AATAT-TAAGATATTTT
7879781 GTGCGGGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (17 bp):
AATATTAAGATATTTTT
Found at i:7887212 original size:14 final size:14
Alignment explanation
Indices: 7887193--7887220 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7887183 CAGTTCCGTA
7887193 ATGGTCTAGCATTT
1 ATGGTCTAGCATTT
7887207 ATGGTCTAGCATTT
1 ATGGTCTAGCATTT
7887221 TACTATAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
ATGGTCTAGCATTT
Found at i:7915008 original size:2 final size:2
Alignment explanation
Indices: 7914991--7915025 Score: 52
Period size: 2 Copynumber: 16.5 Consensus size: 2
7914981 GAATATGAAG
7914991 AT AT GAT AT GAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
7915026 AAGATTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 27 0.87
3 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7916901 original size:299 final size:298
Alignment explanation
Indices: 7916364--7916957 Score: 807
Period size: 299 Copynumber: 2.0 Consensus size: 298
7916354 AGCGTTTACA
* * * * **
7916364 TAGGAAGATTGTGATGCTTTTAATCCTATATTGGAAGAAAATGAGGATATATTATGGTATATATA
1 TAGGAAGATTGTGATGCTTCTAATCCTACATTGAAAGAAAATGAAGATATATTATAATATATATA
* * * *
7916429 TGTAGAGATCTAAATCTATACTTGTGAGACACCTTTTGTGGGATAAAATCGTGAGACCTTTGAGT
66 TGTAAAGATCTAAATCTATACTTGTAAGACACCTTTTATGAGATAAAATCGTGAGACCTTTGAGT
* * *
7916494 CAAAATGGATAATACTCCACAGGTTGGATACAGGTCTTCACAAATAGTATTAGAACAATCATCTA
131 CAAAATAGATAACACTCCACAGGTTGGATACAGGTCTCCACAAATAGTATTAGAACAATCATCTA
* * *
7916559 TCAGATAGGAGTTAAGTGTTATACTGTACGAGTCACTTTTAGAATCTCGAAAAAGCTAAGTGATA
196 TCAGATAGGAGTTAAGTGCTATACTGTACAAATCACTTTTAGAATCTCGAAAAAGCTAAGTGATA
*
7916624 TATGGT-GAGAGTCATCTT-TAAAATCTCAATGTCTAGTG
261 TATGGTAG-GAGTCA-CTTCTAAAATCTCAATATCTAGTG
*
7916662 TAGGAAGATTGTGATGCTTCTAATCCTACATTGAAAGAAAATGAAGATATGTTATAATATATAAT
1 TAGGAAGATTGTGATGCTTCTAATCCTACATTGAAAGAAAATGAAGATATATTATAATATAT-AT
* ** * *
7916727 ATGTAAAGATTTAAATCTATACTTGTAAGGTACTTTTTATGAGATAAAATCGTGAGACCTTTGGG
65 ATGTAAAGATCTAAATCTATACTTGTAAGACACCTTTTATGAGATAAAATCGTGAGACCTTTGAG
* * * * * *
7916792 TCAAAGTAGATAACACTTCACAGGTTGGATATAGGTCTCCATAAATAGTATTAGAGCAGTCATCT
130 TCAAAATAGATAACACTCCACAGGTTGGATACAGGTCTCCACAAATAGTATTAGAACAATCATCT
* * * ***
7916857 ATCATATGGGAGTTAAGTGCTATA-TCGTACAAATCACTTTTAGAATCTTGAGGGAGCTAAGTGA
195 ATCAGATAGGAGTTAAGTGCTATACT-GTACAAATCACTTTTAGAATCTCGAAAAAGCTAAGTGA
*
7916921 TATATGGTAGGAGTCACTTCTAGAATCTCAATATCTA
259 TATATGGTAGGAGTCACTTCTAAAATCTCAATATCTA
7916958 ATGTGATTTT
Statistics
Matches: 256, Mismatches: 36, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
298 59 0.23
299 196 0.77
300 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (298 bp):
TAGGAAGATTGTGATGCTTCTAATCCTACATTGAAAGAAAATGAAGATATATTATAATATATATA
TGTAAAGATCTAAATCTATACTTGTAAGACACCTTTTATGAGATAAAATCGTGAGACCTTTGAGT
CAAAATAGATAACACTCCACAGGTTGGATACAGGTCTCCACAAATAGTATTAGAACAATCATCTA
TCAGATAGGAGTTAAGTGCTATACTGTACAAATCACTTTTAGAATCTCGAAAAAGCTAAGTGATA
TATGGTAGGAGTCACTTCTAAAATCTCAATATCTAGTG
Found at i:7917272 original size:20 final size:20
Alignment explanation
Indices: 7917229--7917274 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
7917219 CCCGAAATTA
7917229 ATAAAATATTATTTTTAAAAT
1 ATAAAATATTATTTTT-AAAT
7917250 ATAAAATATTATTTCTT-AAT
1 ATAAAATATTATTT-TTAAAT
7917270 ATAAA
1 ATAAA
7917275 TATAAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 8 0.33
21 14 0.58
22 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAT
Found at i:7917277 original size:19 final size:18
Alignment explanation
Indices: 7917226--7917277 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 18
7917216 CGACCCGAAA
7917226 TTAATA-AAATATTATTT
1 TTAATATAAATATTATTT
7917243 TTAAAATATAAAATATTATTT
1 TT--AATAT-AAATATTATTT
7917264 CTTAATATAAATAT
1 -TTAATATAAATAT
7917278 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.07
19 10 0.33
20 5 0.17
21 11 0.37
22 2 0.07
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TTAATATAAATATTATTT
Found at i:7918603 original size:23 final size:22
Alignment explanation
Indices: 7918577--7918620 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
7918567 TCATATGATC
7918577 ATTAATAATATATAAAAATATAT
1 ATTAATAATATAT-AAAATATAT
*
7918600 ATTAATAATATATTAAATATA
1 ATTAATAATATATAAAATATA
7918621 AACTCATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAATAATATATAAAATATAT
Found at i:7918620 original size:9 final size:11
Alignment explanation
Indices: 7918577--7918615 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7918567 TCATATGATC
7918577 ATTAATAATAT
1 ATTAATAATAT
* *
7918588 ATAAAAATATAT
1 ATTAATA-ATAT
7918600 ATTAATAATAT
1 ATTAATAATAT
7918611 ATTAA
1 ATTAA
7918616 ATATAAACTC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTAATAATAT
Found at i:7918654 original size:18 final size:18
Alignment explanation
Indices: 7918631--7918666 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7918621 AACTCATAAT
7918631 TTAATTGAATAAAATATA
1 TTAATTGAATAAAATATA
7918649 TTAATTGAATAAAATATA
1 TTAATTGAATAAAATATA
7918667 GAAGCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (18 bp):
TTAATTGAATAAAATATA
Found at i:7921834 original size:64 final size:64
Alignment explanation
Indices: 7921733--7921860 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
7921723 TGTCAAATGT
* *
7921733 TTGATCCTAAGGTCCTACGTAATCCAGTTGCAGGGAATTGTTTGATATTAAAAAACAGAGCAGA
1 TTGATCCTAAGGTCCGACGTAATCCAGTTGCAGGGAATTGTTTGATATTAAAAAACACAGCAGA
* * *
7921797 TTGATCCTAAGGTCCGACGTAATCCAGTTGCAGGGAATTGTTTGGTGTTAAAAAAGACAGCAGA
1 TTGATCCTAAGGTCCGACGTAATCCAGTTGCAGGGAATTGTTTGATATTAAAAAACACAGCAGA
7921861 ATGAAAAGTC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (64 bp):
TTGATCCTAAGGTCCGACGTAATCCAGTTGCAGGGAATTGTTTGATATTAAAAAACACAGCAGA
Found at i:7921940 original size:23 final size:23
Alignment explanation
Indices: 7921914--7921963 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7921904 GTTTTTTAAT
*
7921914 TTATAGACTTGTCCTCGTTAACA
1 TTATAGACTTGTCCTCGTCAACA
*
7921937 TTATAGACTTGTCCTTGTCAACA
1 TTATAGACTTGTCCTCGTCAACA
7921960 TTAT
1 TTAT
7921964 CTCGAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (23 bp):
TTATAGACTTGTCCTCGTCAACA
Found at i:7923160 original size:83 final size:81
Alignment explanation
Indices: 7923072--7923309 Score: 204
Period size: 83 Copynumber: 3.0 Consensus size: 81
7923062 AAATTATATT
7923072 AATTTATTTAAAATAAATTAATAATTATATTTATCATACCATTTTAATGTTTAAATAAATTTTTA
1 AATTTATTTAAAATAAATTAATAATTATATTTATCATACCATTTTAATGTTTAAATAAATTTTTA
7923137 ATTTTTACAATAATAAC
66 ATTTTTA-AATAATAAC
**** * * ** * * *
7923154 ACATTTATTATTTGTTAAA-TAATAATGACATTTAAAATACGATATT-GT-TTATAATATAAAAT
1 A-ATTTATT-TAAAATAAATTAATAATTATATTTATCATACCATTTTAATGTT-TAA-AT-AAAT
* ***
7923216 TTTTAA-----AAATTATTTT
61 TTTTAATTTTTAAATAATAAC
* * *
7923232 AATTTATTTAAAAAAAATTAATAATTATATTTATCATATCATTTTGATGTTTAAATAAATTTTTA
1 AATTTATTTAAAATAAATTAATAATTATATTTATCATACCATTTTAATGTTTAAATAAATTTTTA
7923297 ATTTTTAAATAAT
66 ATTTTTAAATAAT
7923310 TTTTGTTTAA
Statistics
Matches: 114, Mismatches: 29, Indels: 27
0.67 0.17 0.16
Matches are distributed among these distances:
76 14 0.12
77 29 0.25
78 10 0.09
79 3 0.03
81 8 0.07
82 5 0.04
83 30 0.26
84 15 0.13
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (81 bp):
AATTTATTTAAAATAAATTAATAATTATATTTATCATACCATTTTAATGTTTAAATAAATTTTTA
ATTTTTAAATAATAAC
Found at i:7923252 original size:160 final size:160
Alignment explanation
Indices: 7922983--7923309 Score: 539
Period size: 160 Copynumber: 2.0 Consensus size: 160
7922973 TGTTTCAAAT
* * *
7922983 AATAATAATATATTTATTATTTGTTAAATAATAATGACATATTTAAAATATGATACTATTTATAA
1 AATAATAACACATTTATTATTTGTTAAATAATAATGACA-ATTTAAAATACGATACTATTTATAA
*
7923048 TATAAAAATTTTAAAAATTATATTAATTTATTTAAAATAAATTAATAATTATATTTATCATACCA
65 TATAAAAATTTTAAAAATTATATTAATTTATTTAAAAAAAATTAATAATTATATTTATCATACCA
7923113 TTTTAATGTTTAAATAAATTTTTAATTTTTA
130 TTTTAATGTTTAAATAAATTTTTAATTTTTA
* *
7923144 CAATAATAACACATTTATTATTTGTTAAATAATAATGAC-ATTTAAAATACGATATTGTTTATAA
1 -AATAATAACACATTTATTATTTGTTAAATAATAATGACAATTTAAAATACGATACTATTTATAA
* * *
7923208 TATAAAATTTTTAAAAATTATTTTAATTTATTTAAAAAAAATTAATAATTATATTTATCATATCA
65 TATAAAAATTTTAAAAATTATATTAATTTATTTAAAAAAAATTAATAATTATATTTATCATACCA
*
7923273 TTTTGATGTTTAAATAAATTTTTAATTTTTA
130 TTTTAATGTTTAAATAAATTTTTAATTTTTA
7923304 AATAAT
1 AATAAT
7923310 TTTTGTTTAA
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
159 6 0.04
160 113 0.73
162 36 0.23
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (160 bp):
AATAATAACACATTTATTATTTGTTAAATAATAATGACAATTTAAAATACGATACTATTTATAAT
ATAAAAATTTTAAAAATTATATTAATTTATTTAAAAAAAATTAATAATTATATTTATCATACCAT
TTTAATGTTTAAATAAATTTTTAATTTTTA
Found at i:7923264 original size:77 final size:77
Alignment explanation
Indices: 7923021--7923264 Score: 195
Period size: 77 Copynumber: 3.1 Consensus size: 77
7923011 TAATAATGAC
* * * *
7923021 ATATTTAAAATATGATACTATTTATAATATAAAAATTTTAAAAATTATATTAATTTATTTAAAAT
1 ATATTTAAAATACGATAATGTTTATAATATAAAATTTTTAAAAATTATATTAATTTATTTAAAAT
7923086 AAATTAATAATT
66 AAATTAATAATT
** * * ** * * **
7923098 ATATTTATCATACCATTTTAATGTTTAAATAAATTTTTAATTTTT-ACAATAATAACACATTTAT
1 ATATTTAAAATACGA---TAATGTTT--AT-AATATAAAATTTTTAAAAATTATATTA-ATTTAT
**** *
7923162 TATTTGTTAAA-TAATAATG
59 T-TAAAATAAATTAATAATT
* * * *
7923181 ACATTTAAAATACGATATTGTTTATAATATAAAATTTTTAAAAATTATTTTAATTTATTTAAAAA
1 ATATTTAAAATACGATAATGTTTATAATATAAAATTTTTAAAAATTATATTAATTTATTTAAAAT
7923246 AAATTAATAATT
66 AAATTAATAATT
7923258 ATATTTA
1 ATATTTA
7923265 TCATATCATT
Statistics
Matches: 118, Mismatches: 39, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
76 4 0.03
77 42 0.36
78 9 0.08
80 13 0.11
82 10 0.08
83 35 0.30
84 5 0.04
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (77 bp):
ATATTTAAAATACGATAATGTTTATAATATAAAATTTTTAAAAATTATATTAATTTATTTAAAAT
AAATTAATAATT
Found at i:7932186 original size:2 final size:2
Alignment explanation
Indices: 7932179--7932207 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7932169 TATTAAGCTT
7932179 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7932208 TGTTATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7933927 original size:24 final size:23
Alignment explanation
Indices: 7933899--7933953 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
7933889 GATATAGTTG
*
7933899 TTTATTTTAAATAGA-TAGAAACTA
1 TTTATTTTAAACA-ATTA-AAACTA
7933923 TTTATTTTTAAACAATTAAAACTA
1 TTTA-TTTTAAACAATTAAAACTA
7933947 TTTATTT
1 TTTATTT
7933954 GAACATACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.11
24 15 0.54
25 10 0.36
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (23 bp):
TTTATTTTAAACAATTAAAACTA
Found at i:7935690 original size:23 final size:23
Alignment explanation
Indices: 7935664--7935755 Score: 81
Period size: 23 Copynumber: 4.2 Consensus size: 23
7935654 AAATCTTGAA
*
7935664 TTATTTTATTTTTAAATAAATTT
1 TTATTTTATATTTAAATAAATTT
*
7935687 TTATATTT-TATTT---TATATTT
1 TTAT-TTTATATTTAAATAAATTT
* *
7935707 TTA--TTATATTCATATAAATTT
1 TTATTTTATATTTAAATAAATTT
7935728 TT-TATTTATATTTAAATAAATTT
1 TTAT-TTTATATTTAAATAAATTT
7935751 TTATT
1 TTATT
7935756 ACAAAAAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
17 2 0.04
18 4 0.07
20 9 0.17
21 8 0.15
23 27 0.50
24 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTTTATATTTAAATAAATTT
Found at i:7935815 original size:30 final size:29
Alignment explanation
Indices: 7935774--7935910 Score: 134
Period size: 30 Copynumber: 4.7 Consensus size: 29
7935764 TCAATTTTTG
* * *
7935774 TTAAAAGTTTATCTAAGTACAAATCAAAGA
1 TTAAAAATTTATTTAAATACAAAT-AAAGA
* *
7935804 CTAAAAATTTATTTAAATATAAATTAAA-A
1 TTAAAAATTTATTTAAATACAAA-TAAAGA
*
7935833 TTTAAGAATTTATTTAAATACAAAGTAAAGA
1 -TTAAAAATTTATTTAAATACAAA-TAAAGA
* *
7935864 TTAAAATTTTATTTAAATAC-AATAAAAA
1 TTAAAAATTTATTTAAATACAAATAAAGA
* *
7935892 ATAAAATTTTATTTAAATA
1 TTAAAAATTTATTTAAATA
7935911 AAGTAATAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.25
29 3 0.03
30 63 0.69
31 2 0.02
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (29 bp):
TTAAAAATTTATTTAAATACAAATAAAGA
Found at i:7935918 original size:24 final size:25
Alignment explanation
Indices: 7935841--7935924 Score: 73
Period size: 28 Copynumber: 3.1 Consensus size: 25
7935831 AATTTAAGAA
7935841 TTTATTTAAATACAAAGTAAAGATTAAAAT
1 TTTATTTAAATAC-AA-T-AA-A-TAAAAT
7935871 TTTATTTAAATACAATAAAAAATAAAAT
1 TTTATTTAAATACAAT---AAATAAAAT
7935899 TTTATTTAAATA-AAGT-AATAAAAT
1 TTTATTTAAATACAA-TAAATAAAAT
7935923 TT
1 TT
7935925 AAGTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
24 10 0.20
27 2 0.04
28 20 0.39
29 3 0.06
30 16 0.31
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (25 bp):
TTTATTTAAATACAATAAATAAAAT
Found at i:7946322 original size:25 final size:24
Alignment explanation
Indices: 7946286--7946339 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
7946276 GATATAGTTG
7946286 TTTA-TTTTAAATAGA-TAGAAACTA
1 TTTATTTTTAAATA-ATTA-AAACTA
7946310 TTTATTTTTAAATAATTAAAACTA
1 TTTATTTTTAAATAATTAAAACTA
7946334 TTTATT
1 TTTATT
7946340 AGAACATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (24 bp):
TTTATTTTTAAATAATTAAAACTA
Found at i:7957566 original size:16 final size:16
Alignment explanation
Indices: 7957545--7957577 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7957535 TAGAGTCAAC
7957545 ACTTCAATATCAAGGT
1 ACTTCAATATCAAGGT
7957561 ACTTCAATATCAAGGT
1 ACTTCAATATCAAGGT
7957577 A
1 A
7957578 GACATCAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (16 bp):
ACTTCAATATCAAGGT
Found at i:7966511 original size:64 final size:64
Alignment explanation
Indices: 7966410--7966538 Score: 195
Period size: 64 Copynumber: 2.0 Consensus size: 64
7966400 GCTGAGGTTT
* * * * *
7966410 GAAATCTGCAAAAAGAACTCAACTCAGAAGTCCATTGTGCTAATCAAAGTTTAGCTTGAAATAA
1 GAAATCTACAAAAAGAACTCAACTAAGAAATCCATTGTGCTAATCAAAGTTAAGCTAGAAATAA
* *
7966474 GAAATCTACCAAAAGAACTCAACTAAGAAATCCATTGTGCTAATTAAAGTTAAGCTAGAAATAA
1 GAAATCTACAAAAAGAACTCAACTAAGAAATCCATTGTGCTAATCAAAGTTAAGCTAGAAATAA
7966538 G
1 G
7966539 TAAAAATAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (64 bp):
GAAATCTACAAAAAGAACTCAACTAAGAAATCCATTGTGCTAATCAAAGTTAAGCTAGAAATAA
Found at i:7969229 original size:73 final size:74
Alignment explanation
Indices: 7969110--7969257 Score: 262
Period size: 73 Copynumber: 2.0 Consensus size: 74
7969100 GATCTACTAA
*
7969110 TTGTAGAGAATTACAAACATACAAATCAAATCAAACACTCACTAATACCCATAGATCCTCTCAAT
1 TTGTAGAGAATTACAAACATACAAATCAAATCAAACACTCACTAATACCCATAGACCCTCTCAAT
7969175 TTCCT-TAG
66 TTCCTCTAG
* *
7969183 TTGTAGAGAATTACAAACATACAAATCAAATCAAGCATTCACTAATACCCATAGACCCTCTCAAT
1 TTGTAGAGAATTACAAACATACAAATCAAATCAAACACTCACTAATACCCATAGACCCTCTCAAT
7969248 TTCCTCTAG
66 TTCCTCTAG
7969257 T
1 T
7969258 CCTATAAAGT
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
73 67 0.94
74 4 0.06
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (74 bp):
TTGTAGAGAATTACAAACATACAAATCAAATCAAACACTCACTAATACCCATAGACCCTCTCAAT
TTCCTCTAG
Found at i:7969612 original size:52 final size:52
Alignment explanation
Indices: 7969528--7969632 Score: 147
Period size: 52 Copynumber: 2.0 Consensus size: 52
7969518 TATAACCATA
* * *
7969528 CAAACTTGCCTCTTAAGAATCTTTTTCCTTTTAGAATTCTTCTTCTGCAAGT
1 CAAACTTGACTATTAAAAATCTTTTTCCTTTTAGAATTCTTCTTCTGCAAGT
** * *
7969580 CAAACTTGACTATTAAAAATCTTTTTTTTTTTATAATTCTTCTTCTGTAAGT
1 CAAACTTGACTATTAAAAATCTTTTTCCTTTTAGAATTCTTCTTCTGCAAGT
7969632 C
1 C
7969633 TTCTTATCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.48
Consensus pattern (52 bp):
CAAACTTGACTATTAAAAATCTTTTTCCTTTTAGAATTCTTCTTCTGCAAGT
Found at i:7970177 original size:10 final size:10
Alignment explanation
Indices: 7970164--7970188 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7970154 TATCTTAATC
7970164 CAAACAAACA
1 CAAACAAACA
7970174 CAAACAAACA
1 CAAACAAACA
7970184 CAAAC
1 CAAAC
7970189 CCATGTGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAACAAACA
Found at i:7970319 original size:13 final size:13
Alignment explanation
Indices: 7970301--7970329 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7970291 ACACAAACCT
7970301 ACACACCCATGAG
1 ACACACCCATGAG
7970314 ACACACCCATGAG
1 ACACACCCATGAG
7970327 ACA
1 ACA
7970330 TAAATCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.38, G:0.14, T:0.07
Consensus pattern (13 bp):
ACACACCCATGAG
Found at i:7970509 original size:52 final size:52
Alignment explanation
Indices: 7970439--7970594 Score: 213
Period size: 52 Copynumber: 3.0 Consensus size: 52
7970429 CTAGCCATAT
* *
7970439 AAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTTCTACAAGTC
1 AAACTTGCCTATTAAGAATCCATTTCCTTTTAGAATTCTTCTTCTACAAGTC
* *
7970491 AAACTTGGCTATTGAGAATCCATTTCCTTTTAGAATTCTTCTTCTACAAGTC
1 AAACTTGCCTATTAAGAATCCATTTCCTTTTAGAATTCTTCTTCTACAAGTC
* * ** * * *
7970543 AAACTTTCCTATTAAAAATCTTTTTCCTTTTATAATTCTTATTCTGCAAGTC
1 AAACTTGCCTATTAAGAATCCATTTCCTTTTAGAATTCTTCTTCTACAAGTC
7970595 TTCTTATCCA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (52 bp):
AAACTTGCCTATTAAGAATCCATTTCCTTTTAGAATTCTTCTTCTACAAGTC
Found at i:7975393 original size:18 final size:20
Alignment explanation
Indices: 7975363--7975407 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
7975353 AAGATAATCA
7975363 TTTA-TTTATTTAT-TTATT
1 TTTATTTTATTTATGTTATT
*
7975381 TTTATTTTA-TTATGTTTTT
1 TTTATTTTATTTATGTTATT
*
7975400 TTTCTTTT
1 TTTATTTT
7975408 TATATTAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTATTTTATTTATGTTATT
Found at i:7976032 original size:20 final size:20
Alignment explanation
Indices: 7976007--7976044 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7975997 CAATTTATTG
*
7976007 ATTTTTAAATTTTATTTTTT
1 ATTTTTAAATATTATTTTTT
*
7976027 ATTTTTATATATTATTTT
1 ATTTTTAAATATTATTTT
7976045 AATAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
ATTTTTAAATATTATTTTTT
Found at i:7976573 original size:108 final size:106
Alignment explanation
Indices: 7976423--7976624 Score: 244
Period size: 108 Copynumber: 1.9 Consensus size: 106
7976413 TTTATCATAA
* * * * * *
7976423 ATACCCTTAATACTTCATAAAGTTTCATTCTTATGTTAGACAAATATCATTCATATTAAGGGTCT
1 ATACCCTCAATAATTCATAAAATTTCATTCTTATCTTAGACAAATATCATTCATATAAAGGATCT
7976488 AAAATTAACCAAGC-TTTATATGATTTTTTTTTTAAATTTTATT
66 AAAA-TAA-CAAGCATTTA-ATGATTTTTTTTTTAAATTTTATT
* * * * *
7976531 ATACCCTCAATAATTCATAAAATTTTATTTTTATCTTGGACAAATGTCATTTATATAAAGGATCT
1 ATACCCTCAATAATTCATAAAATTTCATTCTTATCTTAGACAAATATCATTCATATAAAGGATCT
* * *
7976596 TAAATGATAAGCATTTAATGATTTTTTTT
66 AAAATAACAAGCATTTAATGATTTTTTTT
7976625 CATATTATGT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
106 16 0.20
107 6 0.08
108 57 0.72
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (106 bp):
ATACCCTCAATAATTCATAAAATTTCATTCTTATCTTAGACAAATATCATTCATATAAAGGATCT
AAAATAACAAGCATTTAATGATTTTTTTTTTAAATTTTATT
Found at i:7977740 original size:24 final size:26
Alignment explanation
Indices: 7977688--7977743 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
7977678 AATAATTTTT
* *
7977688 TAAAAATATATTAAATTTATTAATAA
1 TAAAAAAATATTAAATATATTAATAA
7977714 TAAAAAAATA-TAAATATA-TAATAA
1 TAAAAAAATATTAAATATATTAATAA
7977738 TAAAAA
1 TAAAAA
7977744 TTATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 12 0.43
25 7 0.25
26 9 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (26 bp):
TAAAAAAATATTAAATATATTAATAA
Found at i:7977748 original size:23 final size:22
Alignment explanation
Indices: 7977709--7977758 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
7977699 TAAATTTATT
7977709 AATAATAAAAAAATATAAATATA
1 AATAAT-AAAAAATATAAATATA
* *
7977732 TAATAATAAAAATTATAATTATA
1 -AATAATAAAAAATATAAATATA
7977755 AATA
1 AATA
7977759 TGTTAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 14 0.58
24 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AATAATAAAAAATATAAATATA
Found at i:7977772 original size:18 final size:16
Alignment explanation
Indices: 7977721--7977791 Score: 51
Period size: 18 Copynumber: 4.5 Consensus size: 16
7977711 TAATAAAAAA
*
7977721 ATATAAATATATA-AT
1 ATATAAATATGTATAT
*
7977736 A-ATAAAAAT-TATA-
1 ATATAAATATGTATAT
7977749 ATTATAAATATGTTAATAT
1 A-TATAAATATG-T-ATAT
*
7977768 ATATATATATGTATAT
1 ATATAAATATGTATAT
*
7977784 ATAGAAAT
1 ATATAAAT
7977792 GAATATGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
13 3 0.07
14 8 0.18
15 8 0.18
16 10 0.23
17 2 0.05
18 12 0.27
19 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
ATATAAATATGTATAT
Found at i:7992153 original size:16 final size:16
Alignment explanation
Indices: 7992128--7992160 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7992118 AATTTTTCTC
7992128 AAAAAAAAAAAAAATG
1 AAAAAAAAAAAAAATG
*
7992144 AAAAATAAAAAAAATG
1 AAAAAAAAAAAAAATG
7992160 A
1 A
7992161 TAAGGTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (16 bp):
AAAAAAAAAAAAAATG
Found at i:7993267 original size:14 final size:15
Alignment explanation
Indices: 7993248--7993281 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7993238 AGAAACGGAA
*
7993248 AGAGAGAT-CAAAAC
1 AGAGAGATAAAAAAC
7993262 AGAGAGATAAAAAAC
1 AGAGAGATAAAAAAC
7993277 AGAGA
1 AGAGA
7993282 ATGGACTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.62, C:0.09, G:0.24, T:0.06
Consensus pattern (15 bp):
AGAGAGATAAAAAAC
Found at i:7993566 original size:81 final size:80
Alignment explanation
Indices: 7993481--7993633 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 80
7993471 TAATAATAAT
* * * *
7993481 AATAATTATAAATACTAATAATTTAATTTTG-ATTTTTGTATAATAT-AGATAAATTTTGATAAC
1 AATAATGATAAATACTAACAATTTAA-TCTGAATTTTT-TATAATATAAG-TAAAATTTGATAAC
*
7993544 TTTTTATATACTCTTGAA
63 TTTTGATATACTCTTGAA
* *
7993562 AATAATGATAAATACTAACAATTTAATCTGAATTTTTTATACTTTAAGTAAAATTTGATAACTTT
1 AATAATGATAAATACTAACAATTTAATCTGAATTTTTTATAATATAAGTAAAATTTGATAACTTT
7993627 TGATATA
66 TGATATA
7993634 ATTTTAGTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
80 31 0.49
81 32 0.51
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.46
Consensus pattern (80 bp):
AATAATGATAAATACTAACAATTTAATCTGAATTTTTTATAATATAAGTAAAATTTGATAACTTT
TGATATACTCTTGAA
Found at i:7993692 original size:21 final size:21
Alignment explanation
Indices: 7993668--7993772 Score: 65
Period size: 21 Copynumber: 5.0 Consensus size: 21
7993658 AAAATTTTAT
*
7993668 TAACCTTCAATATGATTTTGG
1 TAACCTTCAATATAATTTTGG
* **
7993689 TAACATTTGATATTAA-TTTGG
1 TAACCTTCAATA-TAATTTTGG
7993710 TAA-CTTACAATATAATTTTGG
1 TAACCTT-CAATATAATTTTGG
* *
7993731 T-ACTCATT-GATATAATTTTGA
1 TAAC-C-TTCAATATAATTTTGG
* * *
7993752 TAATCTTTAATAAAATTTTGG
1 TAACCTTCAATATAATTTTGG
7993773 CAATTTTTTG
Statistics
Matches: 63, Mismatches: 13, Indels: 16
0.68 0.14 0.17
Matches are distributed among these distances:
20 8 0.13
21 49 0.78
22 4 0.06
23 2 0.03
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (21 bp):
TAACCTTCAATATAATTTTGG
Found at i:7994335 original size:22 final size:22
Alignment explanation
Indices: 7994189--7994344 Score: 77
Period size: 22 Copynumber: 7.1 Consensus size: 22
7994179 AACATTAAAG
* * *
7994189 TACTACTAATTTATGAATGATT
1 TACTACTAAATTATCAATAATT
* *
7994211 TACTATTAAATTAT-ATATGATT
1 TACTACTAAATTATCA-ATAATT
* **
7994233 TACTAATAAATTATTGATAATT
1 TACTACTAAATTATCAATAATT
* * * *
7994255 TATTACTAAAGTA-CTGATTATT
1 TACTACTAAATTATC-AATAATT
* ** *
7994277 TATTA-TAAAGTTA-CAACCGAGT
1 TACTACTAAA-TTATCAA-TAATT
* * *
7994299 TATTATTAATTTATCAATAATT
1 TACTACTAAATTATCAATAATT
7994321 TACTACTAAATTATCAATAATT
1 TACTACTAAATTATCAATAATT
7994343 TA
1 TA
7994345 TTATTATGTT
Statistics
Matches: 105, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
21 6 0.06
22 93 0.89
23 6 0.06
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (22 bp):
TACTACTAAATTATCAATAATT
Found at i:7994356 original size:22 final size:21
Alignment explanation
Indices: 7994298--7994356 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
7994288 TACAACCGAG
7994298 TTATTATTAATTTATCAATAAT
1 TTATTATT-ATTTATCAATAAT
* * *
7994320 TTACTACTAAATTATCAATAAT
1 TTATTA-TTATTTATCAATAAT
7994342 TTATTATTATGTTAT
1 TTATTATTAT-TTAT
7994357 TATGCATTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 2 0.07
22 26 0.90
23 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (21 bp):
TTATTATTATTTATCAATAAT
Found at i:7994627 original size:22 final size:21
Alignment explanation
Indices: 7994472--7994629 Score: 88
Period size: 22 Copynumber: 7.2 Consensus size: 21
7994462 GTTACCACTA
7994472 ATTTA-TATTGAA-TTATCTATG
1 ATTTACTATT-AAGTTAT-TATG
* * *
7994493 ATTTATTATTAATTTATTACTA
1 ATTTACTATTAAGTTATTA-TG
* * *
7994515 ATTAACCATTAAGTCATCTATG
1 ATTTACTATTAAGTTAT-TATG
* *
7994537 ATTACTACTACTAAGTTA-TATTA
1 ATT--TACTATTAAGTTATTA-TG
* *
7994560 ATTTACTTTTAAGTTTATAATG
1 ATTTACTATTAAG-TTATTATG
* * *
7994582 ATTAACTACTAAATTATTACTG
1 ATTTACTATTAAGTTATTA-TG
7994604 ATTTACTATTAAGTTATTCATG
1 ATTTACTATTAAGTTATT-ATG
7994626 ATTT
1 ATTT
7994630 TCTACGGATT
Statistics
Matches: 102, Mismatches: 24, Indels: 21
0.69 0.16 0.14
Matches are distributed among these distances:
21 22 0.22
22 63 0.62
23 8 0.08
24 9 0.09
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.49
Consensus pattern (21 bp):
ATTTACTATTAAGTTATTATG
Found at i:7994627 original size:44 final size:45
Alignment explanation
Indices: 7994506--7994628 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 45
7994496 TATTATTAAT
* * * *
7994506 TTATTACTAATTAACCATTAAGTCA-TCTATGATTACTACTACTAAG
1 TTATTACTAATTTACTATTAAGTTATTC-ATGATTAC-ACTACTAAA
* * *
7994552 TTA-TATTAATTTACTTTTAAGTT-TATAATGATTA-ACTACTAAA
1 TTATTACTAATTTACTATTAAGTTAT-TCATGATTACACTACTAAA
*
7994595 TTATTACTGATTTACTATTAAGTTATTCATGATT
1 TTATTACTAATTTACTATTAAGTTATTCATGATT
7994629 TTCTACGGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
43 11 0.18
44 24 0.39
45 23 0.37
46 4 0.06
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46
Consensus pattern (45 bp):
TTATTACTAATTTACTATTAAGTTATTCATGATTACACTACTAAA
Found at i:7994663 original size:11 final size:11
Alignment explanation
Indices: 7994649--7994732 Score: 55
Period size: 11 Copynumber: 7.7 Consensus size: 11
7994639 TTTATCAATT
7994649 AATTATTATTA
1 AATTATTATTA
* *
7994660 AATTGA-AACT-
1 AATT-ATTATTA
7994670 AATTATTATTA
1 AATTATTATTA
*
7994681 AGTTATTATTA
1 AATTATTATTA
* *
7994692 ATTTACTATTA
1 AATTATTATTA
*** *
7994703 AATTATCCGTG
1 AATTATTATTA
*
7994714 ATTTATTATTA
1 AATTATTATTA
7994725 AATTATTA
1 AATTATTA
7994733 ATGATTAACT
Statistics
Matches: 51, Mismatches: 19, Indels: 6
0.67 0.25 0.08
Matches are distributed among these distances:
9 1 0.02
10 6 0.12
11 43 0.84
12 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (11 bp):
AATTATTATTA
Found at i:7994693 original size:21 final size:21
Alignment explanation
Indices: 7994640--7994708 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
7994630 TCTACGGATT
7994640 TTATCAATTAATTATTATTAAA
1 TTAT-AATTAATTATTATTAAA
* *
7994662 TTGA-AACTAATTATTATTAAG
1 TT-ATAATTAATTATTATTAAA
* *
7994683 TTATTATTAATTTACTATTAAA
1 TTATAATTAA-TTATTATTAAA
7994705 TTAT
1 TTAT
7994709 CCGTGATTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
21 21 0.55
22 15 0.39
23 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (21 bp):
TTATAATTAATTATTATTAAA
Found at i:7994708 original size:22 final size:22
Alignment explanation
Indices: 7994676--7994746 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
7994666 AACTAATTAT
* * *
7994676 TATTAAGTTATTATTAATTTAC
1 TATTAAATTATTAATGATTTAC
*** *
7994698 TATTAAATTATCCGTGATTTAT
1 TATTAAATTATTAATGATTTAC
*
7994720 TATTAAATTATTAATGATTAAC
1 TATTAAATTATTAATGATTTAC
7994742 TATTA
1 TATTA
7994747 TGTTATTACT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.51
Consensus pattern (22 bp):
TATTAAATTATTAATGATTTAC
Found at i:7995087 original size:22 final size:22
Alignment explanation
Indices: 7995019--7995177 Score: 117
Period size: 22 Copynumber: 7.3 Consensus size: 22
7995009 GTGTATAAAA
* *
7995019 AAATTATCAATGATTGA-TAATT
1 AAATTATGAATGATTTACT-ATT
* * * * *
7995041 AAGTTATCAATAATTTATTACT
1 AAATTATGAATGATTTACTATT
* *
7995063 AAACTATTAATGATTTACTATT
1 AAATTATGAATGATTTACTATT
* * * *
7995085 AAATTGTCAATGATTTATTACT
1 AAATTATGAATGATTTACTATT
* *
7995107 AATTTATGAATAATTTA-TCATT
1 AAATTATGAATGATTTACT-ATT
* *
7995129 AAGTTATGAATGATTTACCATT
1 AAATTATGAATGATTTACTATT
*
7995151 AAATTATGAATAATTT-CTATT
1 AAATTATGAATGATTTACTATT
7995172 AAATTA
1 AAATTA
7995178 GTATGAATTA
Statistics
Matches: 108, Mismatches: 26, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
21 11 0.10
22 96 0.89
23 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.45
Consensus pattern (22 bp):
AAATTATGAATGATTTACTATT
Found at i:7995113 original size:11 final size:11
Alignment explanation
Indices: 7995106--7995166 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
7995096 GATTTATTAC
7995106 TAATTTATGAA
1 TAATTTATGAA
* *
7995117 TAATTTATCAT
1 TAATTTATGAA
*
7995128 TAAGTTATGAA
1 TAATTTATGAA
* ** *
7995139 TGATTTACCAT
1 TAATTTATGAA
*
7995150 TAAATTATGAA
1 TAATTTATGAA
7995161 TAATTT
1 TAATTT
7995167 CTATTAAATT
Statistics
Matches: 34, Mismatches: 16, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (11 bp):
TAATTTATGAA
Found at i:7995123 original size:44 final size:44
Alignment explanation
Indices: 7995038--7995177 Score: 149
Period size: 44 Copynumber: 3.2 Consensus size: 44
7995028 ATGATTGATA
* * * * *
7995038 ATTAAGTTATCAATAATTTATTACTAAACTATTAATGATTTACT
1 ATTAAATTATCAATGATTTATTACTAAATTATGAATAATTTACT
* *
7995082 ATTAAATTGTCAATGATTTATTACTAATTTATGAATAATTTA-T
1 ATTAAATTATCAATGATTTATTACTAAATTATGAATAATTTACT
* * ** *
7995125 CATTAAGTTATGAATGATTTACCATTAAATTATGAATAATTT-CT
1 -ATTAAATTATCAATGATTTATTACTAAATTATGAATAATTTACT
7995169 ATTAAATTA
1 ATTAAATTA
7995178 GTATGAATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
43 9 0.11
44 70 0.89
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (44 bp):
ATTAAATTATCAATGATTTATTACTAAATTATGAATAATTTACT
Found at i:7995141 original size:66 final size:66
Alignment explanation
Indices: 7995019--7995157 Score: 170
Period size: 66 Copynumber: 2.1 Consensus size: 66
7995009 GTGTATAAAA
* * * *
7995019 AAATTATCAATGATTGATAATTAAGTTATCAATAATTTATTACTAAACTATTAATGATTTACTAT
1 AAATTATCAATGATTGATAACTAAGTTATCAATAATTTATCACTAAACTATGAATGATTTACCAT
7995084 T
66 T
* * * * * * **
7995085 AAATTGTCAATGATTTATTACTAATTTATGAATAATTTATCATTAAGTTATGAATGATTTACCAT
1 AAATTATCAATGATTGATAACTAAGTTATCAATAATTTATCACTAAACTATGAATGATTTACCAT
7995150 T
66 T
7995151 AAATTAT
1 AAATTAT
7995158 GAATAATTTC
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (66 bp):
AAATTATCAATGATTGATAACTAAGTTATCAATAATTTATCACTAAACTATGAATGATTTACCAT
T
Found at i:7996613 original size:15 final size:17
Alignment explanation
Indices: 7996581--7996618 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7996571 TTTTATTTGA
7996581 AAATTTTTATTATATAT
1 AAATTTTTATTATATAT
*
7996598 AAATTTTTATTATATAG
1 AAATTTTTATTATATAT
7996615 AAAT
1 AAAT
7996619 ATTCAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
AAATTTTTATTATATAT
Found at i:7997676 original size:6 final size:6
Alignment explanation
Indices: 7997665--7997691 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7997655 TTTTGATCTC
7997665 TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
7997692 GATGTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:8004278 original size:20 final size:20
Alignment explanation
Indices: 8004240--8004278 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8004230 TTTATATTTT
*
8004240 AAATAATTATATTTGAATAG
1 AAATAATTATATATGAATAG
8004260 AAATAATTATTATAT-AATA
1 AAATAATTA-TATATGAATA
8004279 AATGTCATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
AAATAATTATATATGAATAG
Found at i:8005453 original size:31 final size:31
Alignment explanation
Indices: 8005410--8005497 Score: 144
Period size: 31 Copynumber: 2.8 Consensus size: 31
8005400 CTCGAATCAT
8005410 GCTCTGAA-ATCACTTGTTAGGGATCATTATA
1 GCTCT-AATATCACTTGTTAGGGATCATTATA
8005441 GCTCTAATATCACTTGTTAGGGATCATTATA
1 GCTCTAATATCACTTGTTAGGGATCATTATA
8005472 GCTCTAATATCACTTGTT-GAGGATCA
1 GCTCTAATATCACTTGTTAG-GGATCA
8005498 CCACAACTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 3 0.05
31 52 0.95
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (31 bp):
GCTCTAATATCACTTGTTAGGGATCATTATA
Found at i:8005542 original size:31 final size:31
Alignment explanation
Indices: 8005420--8005552 Score: 131
Period size: 31 Copynumber: 4.3 Consensus size: 31
8005410 GCTCTGAAAT
* * *
8005420 CACTTGTTAGGGATCATTATAGCTCTAATAT
1 CACTTGTTAAGGATCATCATAGCTCTAATAC
* * *
8005451 CACTTGTTAGGGATCATTATAGCTCTAATAT
1 CACTTGTTAAGGATCATCATAGCTCTAATAC
* * * * * *
8005482 CACTTGTTGAGGATCACCACAACTATGATAC
1 CACTTGTTAAGGATCATCATAGCTCTAATAC
* * *
8005513 CATTTATTAAGGATCATCATAGCTCTGATAC
1 CACTTGTTAAGGATCATCATAGCTCTAATAC
8005544 CACTTGTTA
1 CACTTGTTA
8005553 GGCCAAAAGA
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 84 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (31 bp):
CACTTGTTAAGGATCATCATAGCTCTAATAC
Found at i:8006415 original size:31 final size:31
Alignment explanation
Indices: 8006373--8006486 Score: 138
Period size: 31 Copynumber: 3.6 Consensus size: 31
8006363 TCAAATTATG
* *
8006373 CTCTAAAACCACTTGTTAGGGATCACTATAA
1 CTCTAATACCACTTGTTAGGGATCACCATAA
* * *
8006404 CTCTAATACCACTTGTTGGAGGATCACCACAG
1 CTCTAATACCACTTGTTAG-GGATCACCATAA
* * *
8006436 CTCTGATACCACTTGTTAAGGATTACCATAA
1 CTCTAATACCACTTGTTAGGGATCACCATAA
*
8006467 CTCTGATACCACTTGTTAGG
1 CTCTAATACCACTTGTTAGG
8006487 TCAAAATGCC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
31 45 0.64
32 25 0.36
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CTCTAATACCACTTGTTAGGGATCACCATAA
Found at i:8006795 original size:96 final size:96
Alignment explanation
Indices: 8006625--8006812 Score: 304
Period size: 96 Copynumber: 2.0 Consensus size: 96
8006615 AGTTGTAGAG
* * *
8006625 AATTACAAACATACATAAAAATATATTAACCACTCAACAATCAATACCTATAGACCTTTTCAATC
1 AATTACAAACATACATAAAAACATATTAACCACTCAACAATCAATACCTATAGACCCTTTCAATA
8006690 TCCTATAGTCATATGGAGTATCCTCAATCAA
66 TCCTATAGTCATATGGAGTATCCTCAATCAA
* * *
8006721 AATTACAAACATACATCAAAACATATTAACCACTCAATAATCAATATCTATAGACCCTTTCAATA
1 AATTACAAACATACATAAAAACATATTAACCACTCAACAATCAATACCTATAGACCCTTTCAATA
* *
8006786 TCCTCTAGTCATATGGAGTATTCTCAA
66 TCCTATAGTCATATGGAGTATCCTCAA
8006813 CCCAAACTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 84 1.00
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (96 bp):
AATTACAAACATACATAAAAACATATTAACCACTCAACAATCAATACCTATAGACCCTTTCAATA
TCCTATAGTCATATGGAGTATCCTCAATCAA
Found at i:8007115 original size:16 final size:17
Alignment explanation
Indices: 8007094--8007128 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
8007084 TTTCTTTTAG
8007094 AATTTTTTT-TCTA-CA
1 AATTTTTTTATCTATCA
8007109 AATTTTTTTATCTATCA
1 AATTTTTTTATCTATCA
8007126 AAT
1 AAT
8007129 AATATCTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 4 0.22
17 5 0.28
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTTTTATCTATCA
Found at i:8007309 original size:2 final size:2
Alignment explanation
Indices: 8007302--8007335 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8007292 TGCAACCTTT
8007302 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8007336 AATTCTCTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8007779 original size:2 final size:2
Alignment explanation
Indices: 8007766--8007795 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
8007756 AACTCTTATT
8007766 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
8007796 TAACATGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8024036 original size:7 final size:7
Alignment explanation
Indices: 8024026--8024052 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8024016 TAAAATTTTC
8024026 AAATATT
1 AAATATT
8024033 AAATATT
1 AAATATT
8024040 AAATATT
1 AAATATT
8024047 AAATAT
1 AAATAT
8024053 ATTATATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8026322 original size:18 final size:18
Alignment explanation
Indices: 8026236--8026326 Score: 62
Period size: 18 Copynumber: 4.9 Consensus size: 18
8026226 TTTTAATTAT
* *
8026236 TTATAATGATT-ATTTTT
1 TTATAATAATTAATTTTA
*
8026253 TTACTAATAATTTATTTTA
1 TTA-TAATAATTAATTTTA
*
8026272 TTATTAA-AATATATATCTTA
1 TTA-TAATAAT-TA-ATTTTA
* *
8026292 TTTTTAAT-TTTAATTTTA
1 -TTATAATAATTAATTTTA
8026310 TTATAATAATTAATTTT
1 TTATAATAATTAATTTT
8026327 TAATTTTTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 13
0.71 0.12 0.16
Matches are distributed among these distances:
17 9 0.16
18 23 0.40
19 14 0.25
20 9 0.16
21 2 0.04
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (18 bp):
TTATAATAATTAATTTTA
Found at i:8026323 original size:24 final size:22
Alignment explanation
Indices: 8026295--8026344 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 22
8026285 TATCTTATTT
8026295 TTAA-TTTTAATTTTATTATAATAA
1 TTAATTTTTAATTTT-TTA-AA-AA
8026319 TTAATTTTTAATTTTTTAAAAA
1 TTAATTTTTAATTTTTTAAAAA
8026341 TTAA
1 TTAA
8026345 CCTTATCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 2 0.08
24 7 0.28
25 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTTTTAATTTTTTAAAAA
Found at i:8032120 original size:18 final size:20
Alignment explanation
Indices: 8032084--8032120 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
8032074 CTTCTCCTTT
*
8032084 TTTTTCTCTATTTTTTCTGG
1 TTTTTCTCTATTTTCTCTGG
8032104 TTTTTCT-T-TTTTCTCTG
1 TTTTTCTCTATTTTCTCTG
8032121 CTTGGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 1 0.06
20 7 0.44
ACGTcount: A:0.03, C:0.16, G:0.08, T:0.73
Consensus pattern (20 bp):
TTTTTCTCTATTTTCTCTGG
Found at i:8047017 original size:32 final size:32
Alignment explanation
Indices: 8046981--8047042 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
8046971 TAAGAGATAA
8046981 TAGTAGAAGCAATTATTTGAAAGAAGAAAAAC
1 TAGTAGAAGCAATTATTTGAAAGAAGAAAAAC
8047013 TAGTAGAAGCAATTATTTGAAAGAAGAAAA
1 TAGTAGAAGCAATTATTTGAAAGAAGAAAA
8047043 CCTAAGTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.53, C:0.05, G:0.19, T:0.23
Consensus pattern (32 bp):
TAGTAGAAGCAATTATTTGAAAGAAGAAAAAC
Found at i:8051927 original size:33 final size:31
Alignment explanation
Indices: 8051890--8051950 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 31
8051880 TTAATAATTC
8051890 TTAAAATGATAAAAAAATAAAGAATAATATAAT
1 TTAAAATGATAAAAAAATAAA-AA-AATATAAT
* * *
8051923 TTAAAATTATAATAAATTAAAAAAATAT
1 TTAAAATGATAAAAAAATAAAAAAATAT
8051951 TTAATATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 5 0.20
32 2 0.08
33 18 0.72
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (31 bp):
TTAAAATGATAAAAAAATAAAAAAATATAAT
Found at i:8061210 original size:123 final size:123
Alignment explanation
Indices: 8061041--8061287 Score: 476
Period size: 123 Copynumber: 2.0 Consensus size: 123
8061031 GCAAAATGAA
8061041 CCGTTCCCATCATTAAGAAACACCCCCCCCCCCCCGATCTCTCTCTCTCTATCAATCACTCTCCT
1 CCGTTCCCATCATTAAGAAACACCCCCCCCCCCCCGATCTCTCTCTCTCTATCAATCACTCTCCT
8061106 TCTATCTATTTTTCTCTCTCTTTGTCTGCCACCCCACTCCACATGTTCTTTCACAACC
66 TCTATCTATTTTTCTCTCTCTTTGTCTGCCACCCCACTCCACATGTTCTTTCACAACC
*
8061164 CCGTTCCCATCATTAAGAAACACCCCCCCCCCGCCGATCTCTCTCTCTCTATCAATCACTCTCCT
1 CCGTTCCCATCATTAAGAAACACCCCCCCCCCCCCGATCTCTCTCTCTCTATCAATCACTCTCCT
*
8061229 TCTATCTATTTTTCTCTCTCTTTGTCTGCCACCCCACTTCACATGTTCTTTCACAACC
66 TCTATCTATTTTTCTCTCTCTTTGTCTGCCACCCCACTCCACATGTTCTTTCACAACC
8061287 C
1 C
8061288 TGGGCCTATC
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.18, C:0.43, G:0.05, T:0.34
Consensus pattern (123 bp):
CCGTTCCCATCATTAAGAAACACCCCCCCCCCCCCGATCTCTCTCTCTCTATCAATCACTCTCCT
TCTATCTATTTTTCTCTCTCTTTGTCTGCCACCCCACTCCACATGTTCTTTCACAACC
Found at i:8062182 original size:19 final size:17
Alignment explanation
Indices: 8062124--8062185 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 17
8062114 TAAATTTTTA
*
8062124 TTTAATTTTTTAGTTTGAT
1 TTTAATTTTTTA-ATT-AT
* *
8062143 TTATTATTTTTTAATTTT
1 TT-TAATTTTTTAATTAT
8062161 TTTAATTTTTATATATTAT
1 TTTAATTTTT-TA-ATTAT
8062180 TTTAAT
1 TTTAAT
8062186 ATATTAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.20
18 5 0.14
19 14 0.40
20 9 0.26
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTAATTTTTTAATTAT
Found at i:8074567 original size:2 final size:2
Alignment explanation
Indices: 8074560--8074586 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8074550 GGTTGCATAA
8074560 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
8074587 GTGAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8075938 original size:110 final size:108
Alignment explanation
Indices: 8075742--8075958 Score: 371
Period size: 110 Copynumber: 2.0 Consensus size: 108
8075732 GTGATTATTT
*
8075742 CCACATTTGCATGTGTTCCTCTATTTTTGATTCCGAACCTTTCTACTTCCCTCCTTCCATGGTGT
1 CCACATTTGCATGTGTTCCTCTATCTTTGATTCCGAACCTTTCTACTTCCCTCCTTCCATGGTGT
8075807 TGTTACTTGCTGTATACGATGTCAAATGGCATTGATGTATTACCA
66 TGTTACTTGCTGTATACGATGTCAAA--GCATTGATGTATTACCA
* *
8075852 CCACATTTGCATGTGTTCCTTTATCTTTGATTCTGAACCTTTCTACTTCCCTCCTTCCATGGTGT
1 CCACATTTGCATGTGTTCCTCTATCTTTGATTCCGAACCTTTCTACTTCCCTCCTTCCATGGTGT
* *
8075917 TGTTACTTGCTGTATATGATGTCGAAGCATTGATGTATTACC
66 TGTTACTTGCTGTATACGATGTCAAAGCATTGATGTATTACC
8075959 TTATAAGTAT
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
108 16 0.16
110 86 0.84
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (108 bp):
CCACATTTGCATGTGTTCCTCTATCTTTGATTCCGAACCTTTCTACTTCCCTCCTTCCATGGTGT
TGTTACTTGCTGTATACGATGTCAAAGCATTGATGTATTACCA
Found at i:8083011 original size:36 final size:37
Alignment explanation
Indices: 8082925--8083014 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
8082915 ACACATTTTT
* *** *
8082925 TATTATAAATTTTATTTGTAATAATATTAACTAAATA
1 TATTTTAAATTTTATAAATAATAATATTAAATAAATA
8082962 TATTTTAAATTTTATAAATAATAATATTAAATAAA-A
1 TATTTTAAATTTTATAAATAATAATATTAAATAAATA
**
8082998 TATTTTATTTTTTATAA
1 TATTTTAAATTTTATAA
8083015 TTTTAACAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 16 0.35
37 30 0.65
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (37 bp):
TATTTTAAATTTTATAAATAATAATATTAAATAAATA
Found at i:8083081 original size:35 final size:37
Alignment explanation
Indices: 8083015--8083090 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 37
8083005 TTTTTTATAA
* * *
8083015 TTTTAACAAAAGTTATATTTTTTATT-TTAAAAT-TT
1 TTTTAACAAAAATTATAGTTTTTATTCTAAAAATGTT
8083050 TTTTCAACAAAAATTAT-GTTTTTATTCTAAAAATGTT
1 TTTT-AACAAAAATTATAGTTTTTATTCTAAAAATGTT
8083087 TTTT
1 TTTT
8083091 TATTGAATCC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 12 0.34
36 17 0.49
37 6 0.17
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (37 bp):
TTTTAACAAAAATTATAGTTTTTATTCTAAAAATGTT
Found at i:8083153 original size:20 final size:20
Alignment explanation
Indices: 8083128--8083190 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8083118 ATTTTTAACA
8083128 AAAACAATATTTTTATTTTT
1 AAAACAATATTTTTATTTTT
**
8083148 AAAAC-ATCATTTTT-TTAAT
1 AAAACAAT-ATTTTTATTTTT
8083167 AAAA-ATTATATTTTTA-TTTT
1 AAAACA--ATATTTTTATTTTT
8083187 AAAA
1 AAAA
8083191 ATATTATCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.26
20 23 0.68
21 2 0.06
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAACAATATTTTTATTTTT
Found at i:8083180 original size:17 final size:19
Alignment explanation
Indices: 8083160--8083231 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 19
8083150 AACATCATTT
8083160 TTTTAAT-AAAA-ATTATA
1 TTTTAATAAAAATATTATA
* *
8083177 TTTTTATTTTAAAAATATTATCC
1 -TTTTA--ATAAAAATATTAT-A
8083200 TTTTAATAAAAATATTATA
1 TTTTAATAAAAATATTATA
8083219 TTTTCAATAAAAA
1 TTTT-AATAAAAA
8083232 CTACATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 5 0.11
19 4 0.09
20 21 0.48
21 4 0.09
22 10 0.23
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTTAATAAAAATATTATA
Found at i:8083191 original size:20 final size:20
Alignment explanation
Indices: 8083103--8083192 Score: 60
Period size: 19 Copynumber: 4.3 Consensus size: 20
8083093 TTGAATCCTA
8083103 AAAAAT-ATATTTTTTATTTTT
1 AAAAATCATA-TTTTTA-TTTT
*
8083124 AACAAAAACAATATTTTTATTTTT
1 -A-AAAATC-ATATTTTTA-TTTT
**
8083148 AAAACATCAT-TTTTT-TAAT
1 AAAA-ATCATATTTTTATTTT
*
8083167 AAAAATTATATTTTTATTTT
1 AAAAATCATATTTTTATTTT
8083187 AAAAAT
1 AAAAAT
8083193 ATTATCCTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
18 4 0.07
19 11 0.20
20 8 0.15
21 5 0.09
22 6 0.11
23 7 0.13
24 11 0.20
25 3 0.05
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAAATCATATTTTTATTTT
Found at i:8083212 original size:40 final size:40
Alignment explanation
Indices: 8083120--8083222 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
8083110 TATTTTTTAT
* ** * **
8083120 TTTTAACAAAAACAATATTTTTATTTTTAAAACATCATTT
1 TTTTAATAAAAATTATATTTTTATTTTAAAAACATCATCC
* *
8083160 TTTTAATAAAAATTATATTTTTATTTTAAAAATATTATCC
1 TTTTAATAAAAATTATATTTTTATTTTAAAAACATCATCC
8083200 TTTTAATAAAAATATTATATTTT
1 TTTTAAT-AAAA-ATTATATTTT
8083223 CAATAAAAAC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 39 0.74
41 4 0.08
42 10 0.19
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (40 bp):
TTTTAATAAAAATTATATTTTTATTTTAAAAACATCATCC
Found at i:8085645 original size:9 final size:8
Alignment explanation
Indices: 8085629--8085662 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
8085619 TAATATTGTT
8085629 AATAAAAA
1 AATAAAAA
8085637 AATATAAAA
1 AATA-AAAA
8085646 AATAAAAA
1 AATAAAAA
8085654 AACTAAAAA
1 AA-TAAAAA
8085663 TGTGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 10 0.42
9 14 0.58
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:8086623 original size:49 final size:47
Alignment explanation
Indices: 8086562--8086665 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 47
8086552 AAAGATAAAT
* *
8086562 AAAAAAA-ATTTTAAA-TAGGCTCAAATAATAAAAAATTTAGAAATTCA
1 AAAAAAATATTTTAAATTA-ACCCAAATAATAAAAAATTTAGAAA-TCA
* * *
8086609 AAAAAAATATTTTTAAATTAACCCAAATGATGAAAAATTTAGAAATCT
1 AAAAAAATA-TTTTAAATTAACCCAAATAATAAAAAATTTAGAAATCA
8086657 AAAAAAATA
1 AAAAAAATA
8086666 AATAAATAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
47 7 0.14
48 12 0.24
49 28 0.57
50 2 0.04
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.28
Consensus pattern (47 bp):
AAAAAAATATTTTAAATTAACCCAAATAATAAAAAATTTAGAAATCA
Found at i:8090688 original size:9 final size:9
Alignment explanation
Indices: 8090670--8090716 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
8090660 AAATTTTGTT
8090670 AATA-AAAA
1 AATATAAAA
8090678 AATATAAAA
1 AATATAAAA
*
8090687 AA-ATGAAA
1 AATATAAAA
*
8090695 AATATGAAA
1 AATATAAAA
8090704 AATATGAAAA
1 AATAT-AAAA
8090714 AAT
1 AAT
8090717 TAGTAGTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 11 0.32
9 17 0.50
10 6 0.18
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (9 bp):
AATATAAAA
Found at i:8090695 original size:17 final size:18
Alignment explanation
Indices: 8090675--8090714 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8090665 TTGTTAATAA
8090675 AAAAATAT-AAAAAAATG
1 AAAAATATGAAAAAAATG
*
8090692 AAAAATATGAAAAATATG
1 AAAAATATGAAAAAAATG
8090710 AAAAA
1 AAAAA
8090715 ATTAGTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAAAATATGAAAAAAATG
Found at i:8091254 original size:25 final size:25
Alignment explanation
Indices: 8091226--8091273 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8091216 ATAATTATCC
8091226 AATGATAAAATTTTTA-AAAATTTCA
1 AATGAT-AAATTTTTATAAAATTTCA
* *
8091251 AATGGTAGATTTTTATAAAATTT
1 AATGATAAATTTTTATAAAATTT
8091274 TTAGGTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (25 bp):
AATGATAAATTTTTATAAAATTTCA
Found at i:8097807 original size:24 final size:24
Alignment explanation
Indices: 8097767--8097834 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
8097757 GGGATTAAAA
* *
8097767 ATAA-TAATAAAATTATTTTAATT
1 ATAATTAAAAAAATTATTATAATT
* *
8097790 GTAATTAAAAAAATTATTATAGTT
1 ATAATTAAAAAAATTATTATAATT
8097814 ATAATTAAAAAAA-TATTATAA
1 ATAATTAAAAAAATTATTATAA
8097835 ATTTATAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.26
24 28 0.74
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (24 bp):
ATAATTAAAAAAATTATTATAATT
Found at i:8107965 original size:3 final size:3
Alignment explanation
Indices: 8107957--8107989 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8107947 ACTAAATGGG
8107957 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8107990 TAAACATACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8111106 original size:13 final size:14
Alignment explanation
Indices: 8111082--8111111 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
8111072 AAAGTATGAT
8111082 ATATATTTTTTAAA
1 ATATATTTTTTAAA
8111096 ATATA-TTTTTAAA
1 ATATATTTTTTAAA
8111109 ATA
1 ATA
8111112 CAAAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATATATTTTTTAAA
Found at i:8114624 original size:2 final size:2
Alignment explanation
Indices: 8114619--8114649 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8114609 GTTAATTTAT
*
8114619 TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8114650 GGTATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8118056 original size:42 final size:40
Alignment explanation
Indices: 8117992--8118094 Score: 161
Period size: 42 Copynumber: 2.5 Consensus size: 40
8117982 ATAGAGAGAA
* *
8117992 AGAGAAAGAGAAGCTGTTTTAAACAGCAAAATGCCAATGT
1 AGAGAAAGAGAAGCTGTTTTAAACAGAAAAATGCCAATGG
8118032 AGAGCAAGAGAGAAGCTGTTTTAAACAGAAAAATGCCAATGG
1 AGAG-AA-AGAGAAGCTGTTTTAAACAGAAAAATGCCAATGG
*
8118074 AGAGAAAGAGAAACTGTTTTA
1 AGAGAAAGAGAAGCTGTTTTA
8118095 GATAGGAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
40 18 0.31
41 4 0.07
42 36 0.62
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (40 bp):
AGAGAAAGAGAAGCTGTTTTAAACAGAAAAATGCCAATGG
Found at i:8122503 original size:5 final size:5
Alignment explanation
Indices: 8122493--8122519 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8122483 AGAATGAGGA
8122493 ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT
8122520 TAAAGAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:8126324 original size:30 final size:30
Alignment explanation
Indices: 8126282--8126383 Score: 74
Period size: 30 Copynumber: 3.4 Consensus size: 30
8126272 TGAAATATTA
8126282 TTTCT-AAGAAAAATTGATACTTTTAATTTT
1 TTTCTCAAGAAAAATT-ATACTTTTAATTTT
* *
8126312 TTTCTCAA-AAAAA-TAT-TTTTTGCAAACTTTA
1 TTTCTCAAGAAAAATTATACTTTT---AA-TTTT
*
8126343 TTT-TCAAGAAAAATTAATACTTTTAA-CTT
1 TTTCTCAAGAAAAATT-ATACTTTTAATTTT
8126372 TTTCTCAA-AAAA
1 TTTCTCAAGAAAA
8126384 TATTTTTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
27 4 0.07
28 2 0.04
29 9 0.16
30 20 0.35
31 15 0.26
32 1 0.02
33 2 0.04
34 4 0.07
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (30 bp):
TTTCTCAAGAAAAATTATACTTTTAATTTT
Found at i:8126344 original size:61 final size:58
Alignment explanation
Indices: 8126174--8126390 Score: 183
Period size: 61 Copynumber: 3.7 Consensus size: 58
8126164 TATTTTTTTA
* * * * * *
8126174 AAAATATTGATACTTTCAA-TTTTTCCTCAAAAAATAATTTTTGAAATTTTTATTTTTAAT
1 AAAA-ATTAATACTTTTAACTTTTT-CTCAAAAAATATTTTTTGAAA-TATTATTTTCAAG
* * * * * ***
8126234 AAGAATTGATA-TTTCAACTTTTCCT-TAACTCTATTTTTTGAAATATTA-TTTCTAAG
1 AAAAATTAATACTTTTAACTTTTTCTCAAAAAATATTTTTTGAAATATTATTTTC-AAG
* *
8126290 AAAAATTGATACTTTTAATTTTTTTCTCAAAAAAATATTTTTTGCAAACT-TTATTTTCAAG
1 AAAAATTAATACTTTTAA-CTTTTTCTC-AAAAAATATTTTTTG-AAA-TATTATTTTCAAG
8126351 AAAAATTAATACTTTTAACTTTTTCTCAAAAAATATTTTT
1 AAAAATTAATACTTTTAACTTTTTCTCAAAAAATATTTTT
8126391 AAAAATTTTT
Statistics
Matches: 128, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
55 3 0.02
56 16 0.12
57 18 0.14
58 14 0.11
59 24 0.19
60 22 0.17
61 26 0.20
62 5 0.04
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.48
Consensus pattern (58 bp):
AAAAATTAATACTTTTAACTTTTTCTCAAAAAATATTTTTTGAAATATTATTTTCAAG
Found at i:8130676 original size:29 final size:29
Alignment explanation
Indices: 8130633--8130697 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
8130623 TGTAATAAAA
* **
8130633 TATTAAATATGATATCTAAATTTTAAAATT
1 TATT-AATATAATATCTAAATTAAAAAATT
*
8130663 TTTTAATATAATATCTAAATTAAAAAATT
1 TATTAATATAATATCTAAATTAAAAAATT
8130692 TATTAA
1 TATTAA
8130698 CTGATTAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (29 bp):
TATTAATATAATATCTAAATTAAAAAATT
Found at i:8131021 original size:11 final size:11
Alignment explanation
Indices: 8131005--8131055 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
8130995 AATTAAATAA
8131005 AAAAACAAAAT
1 AAAAACAAAAT
*
8131016 AAAAACAAAAC
1 AAAAACAAAAT
8131027 AAAAACAAAA-
1 AAAAACAAAAT
*
8131037 CAAAA-AAAAT
1 AAAAACAAAAT
8131047 AAAAA-AAAA
1 AAAAACAAAA
8131056 AACAAATGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
9 4 0.11
10 12 0.33
11 20 0.56
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.04
Consensus pattern (11 bp):
AAAAACAAAAT
Found at i:8131027 original size:16 final size:16
Alignment explanation
Indices: 8131006--8131061 Score: 71
Period size: 16 Copynumber: 3.5 Consensus size: 16
8130996 ATTAAATAAA
8131006 AAAACAAAATAAAAAC
1 AAAACAAAATAAAAAC
8131022 AAAACAAAA-ACAAAAC
1 AAAACAAAATA-AAAAC
*
8131038 AAAA-AAAATAAAAAAA
1 AAAACAAAAT-AAAAAC
8131054 AAAACAAA
1 AAAACAAA
8131062 TGGGGCTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
15 5 0.14
16 26 0.74
17 4 0.11
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.04
Consensus pattern (16 bp):
AAAACAAAATAAAAAC
Found at i:8131062 original size:16 final size:16
Alignment explanation
Indices: 8130998--8131062 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
8130988 ATTTATTAAT
*
8130998 TAAATAAAAAAACAAA
1 TAAAAAAAAAAACAAA
*
8131014 -ATAAAAACAAAACAAA
1 TA-AAAAAAAAAACAAA
8131030 -AACAAAACAAAAA-AAA
1 TAA-AAAA-AAAAACAAA
8131046 TAAAAAAAAAAACAAA
1 TAAAAAAAAAAACAAA
8131062 T
1 T
8131063 GGGGCTGATG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
15 7 0.17
16 28 0.68
17 6 0.15
ACGTcount: A:0.83, C:0.09, G:0.00, T:0.08
Consensus pattern (16 bp):
TAAAAAAAAAAACAAA
Found at i:8131422 original size:104 final size:103
Alignment explanation
Indices: 8131253--8131559 Score: 339
Period size: 104 Copynumber: 2.9 Consensus size: 103
8131243 AAGACCTTAG
* * * *
8131253 GCACTCCCTCTTCTATGCCCAGACACCCTGCCTTCAAACACACTCGAAACCCCCAAAGCTTCGGA
1 GCACT-CCTTTTCTATGCCCAGACACCTTACCTTCGAACACACTCGAAACCCCCAAAGCTTCGGA
*
8131318 TATCCAAAAAATCCAAAAGCTCAAACTGAGAAGACCCCAA
65 TATCCAAAAAA-CCAAAAGCTCAGACTGAGAAGACCCCAA
8131358 GCACTCCTTTTCTATGCCCAGACACCTTACCTTCGAACACACTCGAAACCCCCAAAGCTTCGGAT
1 GCACTCCTTTTCTATGCCCAGACACCTTACCTTCGAACACACTCGAAACCCCCAAAGCTTCGGAT
* * * * * *
8131423 ATCTACAAAACCCAAAAGCTCAGATTGAAAAGACCTCAG
66 ATCCA-AAAAACCAAAAGCTCAGACTGAGAAGACCCCAA
* * * * * * * **
8131462 GCACTTCATCTTT-GATGCTCAGACACCTTACTTTTGAACATAAC-CGAAACCCCCAAAACTTTA
1 GCAC-TCCT-TTTCTATGCCCAGACACCTTACCTTCGAACA-CACTCGAAACCCCCAAAGCTTCG
* *
8131525 GATATCCAGAAAACCTAAAAGCTTAGACTGAGAAG
63 GATATCCAAAAAACC-AAAAGCTCAGACTGAGAAG
8131560 GTCCCCAGTC
Statistics
Matches: 171, Mismatches: 26, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
104 92 0.54
105 74 0.43
106 5 0.03
ACGTcount: A:0.35, C:0.32, G:0.12, T:0.20
Consensus pattern (103 bp):
GCACTCCTTTTCTATGCCCAGACACCTTACCTTCGAACACACTCGAAACCCCCAAAGCTTCGGAT
ATCCAAAAAACCAAAAGCTCAGACTGAGAAGACCCCAA
Found at i:8132421 original size:21 final size:21
Alignment explanation
Indices: 8132396--8132439 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8132386 CAAGTGATTT
**
8132396 TTTTTATTTTTTTAAATATTA
1 TTTTTATCATTTTAAATATTA
* *
8132417 TTTTTGTCATTTTAAATTTTA
1 TTTTTATCATTTTAAATATTA
8132438 TT
1 TT
8132440 ATTAATATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTATCATTTTAAATATTA
Found at i:8133715 original size:19 final size:20
Alignment explanation
Indices: 8133691--8133735 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
8133681 TAGAGTTTGA
* *
8133691 TTTTTATAAATA-TTTTTAT
1 TTTTTATAAATAGTTTTCAC
8133710 TTTTTA-AAATAGTTTTCAC
1 TTTTTATAAATAGTTTTCAC
8133729 TTTTTAT
1 TTTTTAT
8133736 TTTCAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTTATAAATAGTTTTCAC
Found at i:8139951 original size:2 final size:2
Alignment explanation
Indices: 8139944--8139970 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8139934 TCTTTGATTT
8139944 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8139971 CTATGCATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8142072 original size:22 final size:22
Alignment explanation
Indices: 8142044--8142104 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
8142034 CCTACGTCCA
8142044 TTCACGTGAACTTTTTTCAAAT
1 TTCACGTGAACTTTTTTCAAAT
8142066 TTCACGTGAACTTTTTTCAAAT
1 TTCACGTGAACTTTTTTCAAAT
* *
8142088 TTCACGTAAATTTTTTT
1 TTCACGTGAACTTTTTT
8142105 ATCAATTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.26, C:0.16, G:0.08, T:0.49
Consensus pattern (22 bp):
TTCACGTGAACTTTTTTCAAAT
Found at i:8144889 original size:10 final size:10
Alignment explanation
Indices: 8144876--8144934 Score: 56
Period size: 10 Copynumber: 6.4 Consensus size: 10
8144866 TATAATAAAA
8144876 ATTTAAAATT
1 ATTTAAAATT
8144886 ATTTAAAATT
1 ATTTAAAATT
*
8144896 -TATAAAATT
1 ATTTAAAATT
*
8144905 A-AT-AAATT
1 ATTTAAAATT
*
8144913 ATTAAAAATT
1 ATTTAAAATT
8144923 A-TT-AAATT
1 ATTTAAAATT
8144931 ATTT
1 ATTT
8144935 TATATCAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
8 12 0.29
9 13 0.32
10 16 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTTAAAATT
Found at i:8144900 original size:27 final size:27
Alignment explanation
Indices: 8144873--8144931 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
8144863 ATATATAATA
* *
8144873 AAAATTTA-AAATTATTTAAAATTTAT
1 AAAATTAATAAATTATTAAAAATTTAT
8144899 AAAATTAATAAATTATTAAAAA-TTAT
1 AAAATTAATAAATTATTAAAAATTTAT
*
8144925 TAAATTA
1 AAAATTA
8144932 TTTTATATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
AAAATTAATAAATTATTAAAAATTTAT
Found at i:8144929 original size:18 final size:19
Alignment explanation
Indices: 8144879--8144933 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
8144869 AATAAAAATT
*
8144879 TAAAATTATTTAAAAT-TTA
1 TAAAATTA-TTAAATTATTA
*
8144898 TAAAATTAATAAATTATTA
1 TAAAATTATTAAATTATTA
8144917 -AAAATTATTAAATTATT
1 TAAAATTATTAAATTATT
8144934 TTATATCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TAAAATTATTAAATTATTA
Found at i:8159866 original size:25 final size:25
Alignment explanation
Indices: 8159837--8159902 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
8159827 TTAATATAAC
*
8159837 TATTAAAATATTAAAAATTGTTTAT
1 TATTAAAATATTAAAAATTATTTAT
*
8159862 TATTAAAATA-TACTGAAATTATTTAT
1 TATTAAAATATTA--AAAATTATTTAT
8159888 TATTAAAATTATTAA
1 TATTAAAA-TATTAA
8159903 TATTAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
24 2 0.06
25 10 0.29
26 18 0.53
27 2 0.06
28 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (25 bp):
TATTAAAATATTAAAAATTATTTAT
Found at i:8159896 original size:16 final size:15
Alignment explanation
Indices: 8159877--8159910 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8159867 AAATATACTG
*
8159877 AAATTATTTATTATTA
1 AAATTA-TTAATATTA
8159893 AAATTATTAATATTA
1 AAATTATTAATATTA
8159908 AAA
1 AAA
8159911 AATAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATTATTAATATTA
Found at i:8159908 original size:15 final size:16
Alignment explanation
Indices: 8159877--8159993 Score: 58
Period size: 16 Copynumber: 6.9 Consensus size: 16
8159867 AAATATACTG
*
8159877 AAATTATTTATTATTA
1 AAATTATTTAATATTA
8159893 AAATTA-TTAATATTAA
1 AAATTATTTAATATT-A
* * *
8159909 AAAATAATTATATTTTA
1 AAATTATTTA-ATATTA
8159926 ATAATAATATTTAATATTAA
1 A-AAT--TATTTAATATT-A
*
8159946 AATATTATGTTAATATAA
1 AA-ATTAT-TTAATATTA
* * *
8159964 AAAATAATTAA-AATA
1 AAATTATTTAATATTA
* *
8159979 AAACTATTTATTATT
1 AAATTATTTAATATT
8159994 CTTTATATTA
Statistics
Matches: 76, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
15 17 0.22
16 18 0.24
17 8 0.11
18 12 0.16
19 12 0.16
20 9 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (16 bp):
AAATTATTTAATATTA
Found at i:8159911 original size:16 final size:17
Alignment explanation
Indices: 8159877--8159968 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 17
8159867 AAATATACTG
*
8159877 AAATTATTTATTATT-A
1 AAATTATTTAATATTAA
8159893 AAATTA-TTAATATTAA
1 AAATTATTTAATATTAA
* * *
8159909 AAAATAATTATATTTTAA
1 AAATTATTTA-ATATTAA
*
8159927 TAATAATATTTAATATTAA
1 -AA-ATTATTTAATATTAA
*
8159946 AATATTATGTTAATATAAA
1 AA-ATTAT-TTAATATTAA
8159965 AAAT
1 AAAT
8159969 AATTAAAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
15 7 0.11
16 12 0.19
17 3 0.05
18 15 0.24
19 19 0.30
20 7 0.11
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (17 bp):
AAATTATTTAATATTAA
Found at i:8159919 original size:20 final size:20
Alignment explanation
Indices: 8159894--8159973 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 20
8159884 TTATTATTAA
8159894 AATTATTAATATTAAAAAAT
1 AATTATTAATATTAAAAAAT
* *
8159914 AATTA-T-AT-TTTAATAAT
1 AATTATTAATATTAAAAAAT
*
8159931 AA-TATTTAATATTAAAATAT
1 AATTA-TTAATATTAAAAAAT
* *
8159951 TA-TGTTAATA-TAAAAAAT
1 AATTATTAATATTAAAAAAT
8159969 AATTA
1 AATTA
8159974 AAATAAAACT
Statistics
Matches: 45, Mismatches: 10, Indels: 11
0.68 0.15 0.17
Matches are distributed among these distances:
16 2 0.04
17 9 0.20
18 11 0.24
19 10 0.22
20 13 0.29
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (20 bp):
AATTATTAATATTAAAAAAT
Found at i:8159958 original size:19 final size:18
Alignment explanation
Indices: 8159881--8159974 Score: 74
Period size: 18 Copynumber: 5.4 Consensus size: 18
8159871 ATACTGAAAT
*
8159881 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
8159897 TA-TTAATATTAAAA-AA
1 TATTTAATATTAAAATAA
* *
8159913 TAATTATATTTTAATAATAA
1 TATTTA-ATATTAA-AATAA
*
8159933 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
8159951 TATGTTAATA-TAAAA-AA
1 TAT-TTAATATTAAAATAA
*
8159968 TAATTAA
1 TATTTAA
8159975 AATAAAACTA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
15 11 0.17
16 8 0.12
17 6 0.09
18 18 0.28
19 14 0.22
20 7 0.11
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:8160015 original size:15 final size:13
Alignment explanation
Indices: 8159997--8160096 Score: 59
Period size: 12 Copynumber: 7.6 Consensus size: 13
8159987 TATTATTCTT
8159997 TATATTATGTATTAA
1 TATATTAT-TA-TAA
8160012 TATATTATTATAA
1 TATATTATTATAA
*
8160025 TAT-TTATTA-AT
1 TATATTATTATAA
*
8160036 TAAATTA--ATAA
1 TATATTATTATAA
* *
8160047 TATAATTATTTTAT
1 TAT-ATTATTATAA
8160061 TAT-TTATTA-ACA
1 TATATTATTATA-A
8160073 TAATATTATTTATGAA
1 T-ATATTA-TTAT-AA
8160089 TATATTAT
1 TATATTAT
8160097 AATATTATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 23
0.68 0.08 0.24
Matches are distributed among these distances:
10 1 0.02
11 7 0.11
12 19 0.29
13 8 0.12
14 11 0.17
15 17 0.26
16 2 0.03
17 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (13 bp):
TATATTATTATAA
Found at i:8160023 original size:8 final size:8
Alignment explanation
Indices: 8159996--8160105 Score: 52
Period size: 8 Copynumber: 14.2 Consensus size: 8
8159986 TTATTATTCT
8159996 TTATATTA
1 TTATATTA
*
8160004 -TGTATTA
1 TTATATTA
*
8160011 ATATATTA
1 TTATATTA
*
8160019 TTATAATA
1 TTATATTA
8160027 TT-TATTAA
1 TTATATT-A
*
8160035 TTAAATTAA
1 TTATATT-A
* *
8160044 TAATATAA
1 TTATATTA
*
8160052 TTATTTTA
1 TTATATTA
8160060 TTAT-TTA
1 TTATATTA
*
8160067 TTA-A-CA
1 TTATATTA
*
8160073 TAATATTA
1 TTATATTA
*
8160081 TT-TATGA
1 TTATATTA
*
8160088 ATATATTA
1 TTATATTA
*
8160096 TAATATTA
1 TTATATTA
8160104 TT
1 TT
8160106 TATAAGTAAA
Statistics
Matches: 73, Mismatches: 22, Indels: 14
0.67 0.20 0.13
Matches are distributed among these distances:
6 3 0.04
7 21 0.29
8 40 0.55
9 9 0.12
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.55
Consensus pattern (8 bp):
TTATATTA
Found at i:8160096 original size:41 final size:38
Alignment explanation
Indices: 8159998--8160108 Score: 111
Period size: 36 Copynumber: 2.8 Consensus size: 38
8159988 ATTATTCTTT
* *
8159998 ATATTATGTATTAATATATTATTATAATATTTATTAATTA
1 ATATTAT-TA-TAATATATTATTATATTATTTATTAAATA
*
8160038 A-ATTA--ATAATATAATTATTTTATTATTTATTAACATA
1 ATATTATTATAATAT-ATTATTATATTATTTATTAA-ATA
*
8160075 ATATTATTTATGAATATATTATAATATTATTTAT
1 ATATTA-TTAT-AATATATTATTATATTATTTAT
8160109 AAGTAAAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
35 6 0.10
36 19 0.32
37 3 0.05
38 4 0.07
39 4 0.07
40 1 0.02
41 17 0.29
42 5 0.08
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (38 bp):
ATATTATTATAATATATTATTATATTATTTATTAAATA
Found at i:8160108 original size:12 final size:12
Alignment explanation
Indices: 8160072--8160110 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
8160062 ATTTATTAAC
8160072 ATAATATTATTT
1 ATAATATTATTT
8160084 ATGAATA-TA-TT
1 AT-AATATTATTT
8160095 ATAATATTATTT
1 ATAATATTATTT
8160107 ATAA
1 ATAA
8160111 GTAAAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
10 4 0.17
11 6 0.25
12 10 0.42
13 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (12 bp):
ATAATATTATTT
Done.