Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 36 of 84
Found at i:8477786 original size:18 final size:18
Alignment explanation
Indices: 8477749--8477787 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8477739 AAATTAGATC
*
8477749 TTTTAAATTTTCAATATT
1 TTTTAAATTTCCAATATT
8477767 TTTTAAATTTCC-AT-TT
1 TTTTAAATTTCCAATATT
8477783 TTTTA
1 TTTTA
8477788 GTTTTTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTAAATTTCCAATATT
Found at i:8477875 original size:30 final size:30
Alignment explanation
Indices: 8477810--8477873 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
8477800 TCCTTATATA
8477810 TTTTTTTC-TTTTTTAAAATTTTCAAAGTT
1 TTTTTTTCATTTTTTAAAATTTTCAAAGTT
* *
8477839 CTTTTTTCATTTTTTAAAATTTT--TAGTT
1 TTTTTTTCATTTTTTAAAATTTTCAAAGTT
8477867 TTTTTTT
1 TTTTTTT
8477874 TTATTTTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.32
29 7 0.23
30 14 0.45
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (30 bp):
TTTTTTTCATTTTTTAAAATTTTCAAAGTT
Found at i:8477879 original size:29 final size:29
Alignment explanation
Indices: 8477810--8477881 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
8477800 TCCTTATATA
*
8477810 TTTTTTTCTTTTTTAAAATTTTCAAAGTTC
1 TTTTTTTATTTTTTAAAATTTT-AAAGTTC
* * *
8477840 TTTTTTCATTTTTTAAAATTTT-TAGTTTT
1 TTTTTTTATTTTTTAAAATTTTAAAG-TTC
8477869 TTTTTTTATTTTT
1 TTTTTTTATTTTT
8477882 AGATTTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.06
29 14 0.39
30 20 0.56
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (29 bp):
TTTTTTTATTTTTTAAAATTTTAAAGTTC
Found at i:8477894 original size:15 final size:15
Alignment explanation
Indices: 8477870--8477904 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
8477860 TTTAGTTTTT
*
8477870 TTTTTTATTTTTAGA
1 TTTTTAATTTTTAGA
8477885 TTTTTAATTTTTAGA
1 TTTTTAATTTTTAGA
8477900 TTTTT
1 TTTTT
8477905 TTTGCAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTTTAATTTTTAGA
Found at i:8477902 original size:8 final size:8
Alignment explanation
Indices: 8477876--8477904 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8477866 TTTTTTTTTT
8477876 ATTTTTAG
1 ATTTTTAG
8477884 ATTTTTA-
1 ATTTTTAG
8477891 ATTTTTAG
1 ATTTTTAG
8477899 ATTTTT
1 ATTTTT
8477905 TTTGCAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (8 bp):
ATTTTTAG
Found at i:8478178 original size:22 final size:23
Alignment explanation
Indices: 8478143--8478192 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
8478133 TAAATCAATA
8478143 ATTTAATAAAAATTTAATAATATT
1 ATTTAATAAAAATTTAA-AATATT
*
8478167 -TTTAA-AAGAATTTAAAATATT
1 ATTTAATAAAAATTTAAAATATT
8478188 ATTTA
1 ATTTA
8478193 TAATTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTAATAAAAATTTAAAATATT
Found at i:8478446 original size:21 final size:22
Alignment explanation
Indices: 8478413--8478461 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
8478403 TTTACAAGTT
*
8478413 TAATCTATGTAATAAAAAATTG
1 TAATTTATGTAATAAAAAATTG
** *
8478435 TAATTTAT-TAATTTAAAATTT
1 TAATTTATGTAATAAAAAATTG
8478456 TAATTT
1 TAATTT
8478462 TATTTAATCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TAATTTATGTAATAAAAAATTG
Found at i:8491384 original size:108 final size:110
Alignment explanation
Indices: 8491174--8491390 Score: 255
Period size: 108 Copynumber: 2.0 Consensus size: 110
8491164 GAAAATGATT
* * *
8491174 TAAACTAAAGATTATCACGAAATAAAAGAAAAAAAATTATATAATAAAGGTTCTCATGCAAAGAT
1 TAAACTAAAGATTACCACGAAATAAAAGAAAAAAAATTATATAATAAAGGTTCTCATACAAAAAT
* *
8491239 AATTGAATAAAGAGTTTACTTTAAGTCAAAG-TCTTTTTTATTTC
66 AATTGAATAAAGAGTTCACCTTAAGTCAAAGTTCTTTTTTATTTC
* * * *
8491283 TAAACTAAAGATTACCAC-AAA-AATGAA-AAAAAAATTTCTATAATGAAGGTTTTCATACAAAA
1 TAAACTAAAGATTACCACGAAATAA--AAGAAAAAAAATTATATAATAAAGGTTCTCATACAAAA
* * * *
8491345 ATAATT-AAGTAAAGAGTTCACCTTAGGTTAGAGTTTTTTTTTATTT
64 ATAATTGAA-TAAAGAGTTCACCTTAAGTCAAAGTTCTTTTTTATTT
8491391 TTATTTTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
107 4 0.04
108 57 0.63
109 30 0.33
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (110 bp):
TAAACTAAAGATTACCACGAAATAAAAGAAAAAAAATTATATAATAAAGGTTCTCATACAAAAAT
AATTGAATAAAGAGTTCACCTTAAGTCAAAGTTCTTTTTTATTTC
Found at i:8492066 original size:13 final size:14
Alignment explanation
Indices: 8492048--8492076 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8492038 ATTTGCTAAA
8492048 ATTAAAAAA-TATT
1 ATTAAAAAATTATT
8492061 ATTAAAAAATTATT
1 ATTAAAAAATTATT
8492075 AT
1 AT
8492077 ATTCATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTAAAAAATTATT
Found at i:8495396 original size:21 final size:22
Alignment explanation
Indices: 8495355--8495397 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
8495345 AGTTGGATAG
8495355 TTTAACATAATCATAAATGATT
1 TTTAACATAATCATAAATGATT
*
8495377 TTTAACATAA-CATGAATGATT
1 TTTAACATAATCATAAATGATT
8495398 GAATTTCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (22 bp):
TTTAACATAATCATAAATGATT
Found at i:8504594 original size:15 final size:15
Alignment explanation
Indices: 8504569--8504610 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8504559 AAAGTCTTAA
8504569 AAAAATT-AAAAA-T
1 AAAAATTAAAAAATT
*
8504582 AAATATGTAAAAAATT
1 AAAAAT-TAAAAAATT
8504598 AAAAATTAAAAAA
1 AAAAATTAAAAAA
8504611 AAAACTGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 5 0.21
14 1 0.04
15 12 0.50
16 6 0.25
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
AAAAATTAAAAAATT
Found at i:8504610 original size:8 final size:8
Alignment explanation
Indices: 8504540--8504610 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
8504530 CTTTTTTTTG
8504540 AAAAAACTT
1 AAAAAA-TT
8504549 AAAAAATT
1 AAAAAATT
*
8504557 AAAAAGTCTT
1 AAAAA--ATT
8504567 AAAAAAATT
1 -AAAAAATT
8504576 -AAAAA-T
1 AAAAAATT
*
8504582 -AAATATGT
1 AAAAAAT-T
8504590 AAAAAATT
1 AAAAAATT
8504598 -AAAAATT
1 AAAAAATT
8504605 AAAAAA
1 AAAAAA
8504611 AAAACTGACT
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
6 5 0.10
7 12 0.24
8 14 0.27
9 13 0.25
10 2 0.04
11 5 0.10
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (8 bp):
AAAAAATT
Found at i:8505049 original size:20 final size:22
Alignment explanation
Indices: 8505018--8505058 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8505008 TTGAAATTCA
8505018 AAAAATTAAAAATT-ATTTTTT
1 AAAAATTAAAAATTGATTTTTT
8505039 AAAAATT-AAAATTGATTTTT
1 AAAAATTAAAAATTGATTTTT
8505059 CATGAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AAAAATTAAAAATTGATTTTTT
Found at i:8505123 original size:22 final size:23
Alignment explanation
Indices: 8505098--8505142 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
8505088 AAAAAACAAA
* *
8505098 AATATTTTTAAAA-AATAAAATT
1 AATATTTTCAAAATAAAAAAATT
8505120 AATATTTTCAAAATAAAAAAATT
1 AATATTTTCAAAATAAAAAAATT
8505143 CTAAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
AATATTTTCAAAATAAAAAAATT
Found at i:8505223 original size:18 final size:18
Alignment explanation
Indices: 8505200--8505251 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
8505190 GTTAAAAAAA
*
8505200 TAAAAAAATATAATTTTT
1 TAAAAAAATAAAATTTTT
* *
8505218 TAAAAAATTAAAATATTT
1 TAAAAAAATAAAATTTTT
*
8505236 GAAAAAAATAAAATTT
1 TAAAAAAATAAAATTT
8505252 AATTTCTCTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TAAAAAAATAAAATTTTT
Found at i:8505230 original size:23 final size:23
Alignment explanation
Indices: 8505163--8505233 Score: 61
Period size: 25 Copynumber: 3.0 Consensus size: 23
8505153 CTAAATTTTT
* * *
8505163 ATTTTTTAAAAATATTGAAATCTG
1 ATTTTTTAAAAA-ATTAAAATATA
* * *
8505187 ATTGTTAAAAAAATAAAAAAATATA
1 ATTTTTTAAAAAAT--TAAAATATA
8505212 ATTTTTTAAAAAATTAAAATAT
1 ATTTTTTAAAAAATTAAAATAT
8505234 TTGAAAAAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
23 9 0.25
24 10 0.28
25 17 0.47
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (23 bp):
ATTTTTTAAAAAATTAAAATATA
Found at i:8507347 original size:16 final size:14
Alignment explanation
Indices: 8507307--8507364 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 14
8507297 AATTTTTTTT
8507307 AAATTAAAAAGTATTAA
1 AAATTAAAAA--A-TAA
*
8507324 AAAATAAAAAATAA
1 AAATTAAAAAATAA
*
8507338 AATATCTAAAAATTAA
1 AA-AT-TAAAAAATAA
8507354 AAATTAAAAAA
1 AAATTAAAAAA
8507365 ATTTATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
14 11 0.31
15 4 0.11
16 11 0.31
17 9 0.26
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (14 bp):
AAATTAAAAAATAA
Found at i:8507347 original size:23 final size:23
Alignment explanation
Indices: 8507313--8507362 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
8507303 TTTTAAATTA
8507313 AAAAGTATTAAAAAATAAAAAAT
1 AAAAGTATTAAAAAATAAAAAAT
* *
8507336 AAAA-TATCTAAAAATTAAAAATT
1 AAAAGTAT-TAAAAAATAAAAAAT
8507359 AAAA
1 AAAA
8507363 AAATTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAAGTATTAAAAAATAAAAAAT
Found at i:8507350 original size:15 final size:14
Alignment explanation
Indices: 8507319--8507363 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8507309 ATTAAAAAGT
*
8507319 ATTAAAAAATAAAA
1 ATTAAAAATTAAAA
*
8507333 AATAAAATATCTAAAA
1 ATTAAAA-AT-TAAAA
8507349 ATTAAAAATTAAAA
1 ATTAAAAATTAAAA
8507363 A
1 A
8507364 AATTTATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 12 0.46
15 3 0.12
16 11 0.42
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
ATTAAAAATTAAAA
Found at i:8507799 original size:18 final size:19
Alignment explanation
Indices: 8507758--8507800 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
8507748 ATATTTAAAT
* *
8507758 TTAAAAAAATATTAATTTTT
1 TTAAAAAAATA-TAATATTG
8507778 TTAAAAAAATA-AATATTG
1 TTAAAAAAATATAATATTG
8507796 TTAAA
1 TTAAA
8507801 TATTTTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
TTAAAAAAATATAATATTG
Found at i:8508649 original size:24 final size:24
Alignment explanation
Indices: 8508592--8508649 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
8508582 AAGTTTATAT
*
8508592 TTGATAC-ACTGTCAGTATATAAA
1 TTGATACTACTGTCAGTAAATAAA
*
8508615 TTTTATA-TACTGTCAGTAAATCAAA
1 -TTGATACTACTGTCAGTAAAT-AAA
8508640 -TGATACTACT
1 TTGATACTACT
8508650 TTATTAATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 4 0.14
24 21 0.75
25 3 0.11
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (24 bp):
TTGATACTACTGTCAGTAAATAAA
Found at i:8515540 original size:203 final size:200
Alignment explanation
Indices: 8515175--8515904 Score: 610
Period size: 203 Copynumber: 3.6 Consensus size: 200
8515165 ATCTACCTTG
* * *
8515175 ACAATAAAATAAAACGTCACCCTAT--A-TATATATTT-T-ACGTTAGTTTTCATCAGCTATTTA
1 ACAATAAAATAAAACGTCACCTTATGCATTA-ATTTTTATGACGTTAGTTTTCGTCAGCTATTTA
* * * * * *
8515235 TGAAAAAAAA-ATTATTGAAGGGTA-AATTCATCACAAA-AAATGATAAAATATAATATATTAAT
65 T-AAAAAAAATATCATTGAAAGCTATAA-TCGTCACAAATAAATGATAAAATCTTATATATTAAT
* * ** * *
8515297 GATAAAAAGTGAATCGTTGCAGTATTAATGACAA-AATTATCATCACTAATGATTGTAAGATAAT
128 GAAAAAAAGTAAATCGTCACAGTATT-ATGA-AACAATTATCGTCACAAATGATTGTAAGATAAT
* *
8515361 ATCTACTGTA
191 ATCAACTATA
* *
8515371 ACAATAAAATAAAACGTTACCTTATGCATTAATTTTTATGACGTTAGTTTTCGTTAGCTATTTAT
1 ACAATAAAATAAAACGTCACCTTATGCATTAATTTTTATGACGTTAGTTTTCGTCAGCTATTTAT
* * *
8515436 AAACAAAAACATCATTGAAAGCTATAATCGTCACCAAATAAATGATAAAATCTTATACATTAGTG
66 AAA-AAAAATATCATTGAAAGCTATAATCGTCA-CAAATAAATGATAAAATCTTATATATTAATG
* * * * *
8515501 AAAAAAAGTAAATCATCACAATATTGATGATACAATTATCGTCACGAATGATTATAAGATAATAT
129 AAAAAAAGTAAATCGTCACAGTATT-ATGAAACAATTATCGTCACAAATGATTGTAAGATAATAT
* * *
8515566 AAAATATG
193 CAACTATA
* * * * * ** * * *
8515574 ACAACAAAATCAAATGTCACGTTATGCTTTTTTTTTATATGACGTTAATTTTTGTCAACTATTTA
1 ACAATAAAATAAAACGTCACCTTATGCATTAATTTT-TATGACGTTAGTTTTCGTCAGCTATTTA
* * * * * *
8515639 TAAAGAAGAATGTCATTTGAAGGTTATAATAGTCACAAATTAAATGACAAAATC-TATTATATTA
65 TAAA-AAAAATATCA-TTGAAAGCTATAATCGTCACAAA-TAAATGATAAAATCTTA-TATATTA
** * * * * * *
8515703 ATGACGAAAGGTAAATCGTCATAGTATTAT-AAACATAATTATCGTCACAAATGGTCGCAAGGTA
126 ATGAAAAAAAGTAAATCGTCACAGTATTATGAAAC--AATTATCGTCACAAATGATTGTAAGATA
8515767 ATATCAAAC-ATA
189 ATATC-AACTATA
* * * * *
8515779 ACAAT-AAATCAAACGTCACATTATGCTTTAATTTTTTTGTTACGTTAGTTTTCGTTAGCTATTT
1 ACAATAAAATAAAACGTCACCTTATGCATTAATTTTTATG--ACGTTAGTTTTCGTCAGCTATTT
* *
8515843 AT-GAAAAAATATCATT-AAATGCTATAATCGTCACAAAATAAATGATTAAAT-TTAATATATTA
64 ATAAAAAAAATATCATTGAAA-GCTATAATCGTCAC-AAATAAATGATAAAATCTT-ATATATTA
8515905 GTGATGAAAG
Statistics
Matches: 425, Mismatches: 85, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
196 23 0.05
198 6 0.01
199 6 0.01
200 28 0.07
201 18 0.04
202 40 0.09
203 123 0.29
204 70 0.16
205 109 0.26
206 2 0.00
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.35
Consensus pattern (200 bp):
ACAATAAAATAAAACGTCACCTTATGCATTAATTTTTATGACGTTAGTTTTCGTCAGCTATTTAT
AAAAAAAATATCATTGAAAGCTATAATCGTCACAAATAAATGATAAAATCTTATATATTAATGAA
AAAAAGTAAATCGTCACAGTATTATGAAACAATTATCGTCACAAATGATTGTAAGATAATATCAA
CTATA
Found at i:8515843 original size:205 final size:200
Alignment explanation
Indices: 8515210--8515927 Score: 533
Period size: 205 Copynumber: 3.5 Consensus size: 200
8515200 ATATATATTT
* * * * * * *
8515210 TACGTTAGTTTTCATCAGCTATTTATGAAAAAAAAATTATTGAAGGGTA-AATTCATCACAAA-A
1 TACGTTAGTTTTCGTTAGCTATTTAT-AAAAAAATATCATTGAAAGCTATAA-TCGTCACAAATA
* * * * * * ** * *
8515273 AATGATAAAATATAATATATTAATGATA-AAAAGTGAATCGTTGCAGTATTAATGACAA-AATTA
64 AATGATAAAATCTATTATATTAGTGA-AGAAAGGTAAATCATCACAATATTGATGA-AACAATTA
* * *** ** * * * * *
8515336 TCATCACTAATGATTGTAAGATAATAT-CTACTGTAACAATAAAATAAAACGTTACCTTATGCAT
127 TCGTCACAAATGATCACAAGATAATATAAAAC-ATAACAAT-AAATCAAACGTCACATTATGCTT
*
8515400 TAATTTTTATG
190 TAATTTTTTTG
*
8515411 -ACGTTAGTTTTCGTTAGCTATTTATAAACAAAAACATCATTGAAAGCTATAATCGTCACCAAAT
1 TACGTTAGTTTTCGTTAGCTATTTAT-AA-AAAAATATCATTGAAAGCTATAATCGTCA-CAAAT
* * * *
8515475 AAATGATAAAATCT-TATACATTAGTGAAAAAAAGTAAATCATCACAATATTGATGATACAATTA
63 AAATGATAAAATCTAT-TATATTAGTGAAGAAAGGTAAATCATCACAATATTGATGAAACAATTA
* * * * * * * *
8515539 TCGTCACGAATGATTATAAGATAATATAAAATATGACAACAAAATCAAATGTCACGTTATGCTTT
127 TCGTCACAAATGATCACAAGATAATATAAAACATAACAA-TAAATCAAACGTCACATTATGCTTT
*
8515604 --TTTTTTATA
191 AATTTTTT-TG
* * * * * * * *
8515613 TGACGTTAATTTTTGTCAACTATTTATAAAGAAGAATGTCATTTGAAGGTTATAATAGTCACAAA
1 T-ACGTTAGTTTTCGTTAGCTATTTATAAA-AA-AATATCA-TTGAAAGCTATAATCGTCACAAA
* * * * * *
8515678 TTAAATGACAAAATCTATTATATTAATGACGAAAGGTAAATCGTCATAGTATT-AT-AAACATAA
62 -TAAATGATAAAATCTATTATATTAGTGAAGAAAGGTAAATCATCACAATATTGATGAAAC--AA
* * * *
8515741 TTATCGTCACAAATGGTCGCAAGGTAATATCAAACATAACAATAAATCAAACGTCACATTATGCT
124 TTATCGTCACAAATGATCACAAGATAATATAAAACATAACAATAAATCAAACGTCACATTATGCT
8515806 TTAATTTTTTTG
189 TTAATTTTTTTG
*
8515818 TTACGTTAGTTTTCGTTAGCTATTTATGAAAAAATATCATT-AAATGCTATAATCGTCACAAAAT
1 -TACGTTAGTTTTCGTTAGCTATTTATAAAAAAATATCATTGAAA-GCTATAATCGTCAC-AAAT
* * * * * *
8515882 AAATGATTAAATTTAATATATTAGTGATGAAAGATATATCATCACA
63 AAATGATAAAATCTATTATATTAGTGAAGAAAGGTAAATCATCACA
8515928 GTGTTGGTGC
Statistics
Matches: 407, Mismatches: 86, Indels: 47
0.75 0.16 0.09
Matches are distributed among these distances:
200 25 0.06
201 28 0.07
202 61 0.15
203 112 0.28
204 57 0.14
205 116 0.29
206 8 0.02
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (200 bp):
TACGTTAGTTTTCGTTAGCTATTTATAAAAAAATATCATTGAAAGCTATAATCGTCACAAATAAA
TGATAAAATCTATTATATTAGTGAAGAAAGGTAAATCATCACAATATTGATGAAACAATTATCGT
CACAAATGATCACAAGATAATATAAAACATAACAATAAATCAAACGTCACATTATGCTTTAATTT
TTTTG
Found at i:8522936 original size:29 final size:28
Alignment explanation
Indices: 8522881--8522936 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
8522871 ACCGAATAAA
* *
8522881 CAAAAATAAAATAATAAATAAATAAAAC
1 CAAAAATAAAATAAAAAATAAACAAAAC
*
8522909 CAAAAACTAAAATAAAAAATATACAAAA
1 CAAAAA-TAAAATAAAAAATAAACAAAA
8522937 TATTTTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (28 bp):
CAAAAATAAAATAAAAAATAAACAAAAC
Found at i:8523560 original size:122 final size:121
Alignment explanation
Indices: 8523389--8523655 Score: 269
Period size: 120 Copynumber: 2.2 Consensus size: 121
8523379 ACATGGAAAT
** * *
8523389 ATTTTTTCCAATATTTTAATTTTTACAAAAATGATATTTCTTGAAATTTTTTAGAAAAA-TAAG-
1 ATTTTTTAAAATATTTTAATTTTTACAAAAATAATATTTCTTGAAA--TTTTAAAAAAATTAAGA
* * *
8523452 GTCTTAATCTAAAAAA-ATTCT-AATTTATTAATTATTTC-ATTTTTTAAAATATTAAATTTC
64 TTC-CAAT-TAAAAAATATTCTCAATTT-TTAATTA--TCAATTTTTTAAAATATTAAATTTA
* ** ** *
8523512 ATTTTTT-TAATATTTTAATTATTTTTAAAAATAATATTTCTT-TTATTTTAAAAAAATTTAGAT
1 ATTTTTTAAAATATTTTAATT-TTTACAAAAATAATATTTCTTGAAATTTTAAAAAAATTAAGAT
* *
8523575 TCCAATTAAAAAATATTTTCAATTTTTAGTTATCAATTTTTTAAAATATTAAATTTA
65 TCCAATTAAAAAATATTCTCAATTTTTAATTATCAATTTTTTAAAATATTAAATTTA
8523632 ATTTTTTAAAAATATTTTAATTTT
1 ATTTTTT-AAAATATTTTAATTTT
8523656 AAGATATAAA
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
119 2 0.02
120 45 0.37
121 18 0.15
122 32 0.26
123 25 0.20
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (121 bp):
ATTTTTTAAAATATTTTAATTTTTACAAAAATAATATTTCTTGAAATTTTAAAAAAATTAAGATT
CCAATTAAAAAATATTCTCAATTTTTAATTATCAATTTTTTAAAATATTAAATTTA
Found at i:8523858 original size:27 final size:27
Alignment explanation
Indices: 8523828--8523884 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8523818 TTAAAAAAAT
* *
8523828 AAAATCTAATTTTTGATAAAAATTCAA
1 AAAATATAATTTTTGAAAAAAATTCAA
* * *
8523855 AAAATATTATTTTTTAAAAAAATTGAA
1 AAAATATAATTTTTGAAAAAAATTCAA
8523882 AAA
1 AAA
8523885 TTGAAAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (27 bp):
AAAATATAATTTTTGAAAAAAATTCAA
Found at i:8523885 original size:26 final size:24
Alignment explanation
Indices: 8523799--8523883 Score: 68
Period size: 27 Copynumber: 3.5 Consensus size: 24
8523789 TTAAAATTCT
*
8523799 AAAAGTTGAAAATTT-TTTTTTAA
1 AAAAATTGAAAATTTATTTTTTAA
* * *
8523822 AAAAA-T-AAAATCTAATTTTTGAT
1 AAAAATTGAAAAT-TTATTTTTTAA
*
8523845 AAAAATTCAAAAAATATTATTTTTTAA
1 AAAAATT--GAAAAT-TTATTTTTTAA
8523872 AAAAATTGAAAA
1 AAAAATTGAAAA
8523884 ATTGAAAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
21 5 0.11
22 2 0.04
23 15 0.32
24 1 0.02
25 4 0.09
27 20 0.43
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (24 bp):
AAAAATTGAAAATTTATTTTTTAA
Found at i:8523892 original size:9 final size:9
Alignment explanation
Indices: 8523871--8523899 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8523861 TTATTTTTTA
8523871 AAAAAATTG
1 AAAAAATTG
8523880 -AAAAATTG
1 AAAAAATTG
8523888 AAAAAATTG
1 AAAAAATTG
8523897 AAA
1 AAA
8523900 TTAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (9 bp):
AAAAAATTG
Found at i:8524085 original size:19 final size:20
Alignment explanation
Indices: 8524043--8524086 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8524033 AATAATTTTT
* *
8524043 TTTAATTTTTTGGGATATTT
1 TTTAATTTTTTGAGATATTC
*
8524063 TTTAATTTTTT-AGATGTTC
1 TTTAATTTTTTGAGATATTC
8524082 TTTAA
1 TTTAA
8524087 AATGTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.64
Consensus pattern (20 bp):
TTTAATTTTTTGAGATATTC
Found at i:8524943 original size:20 final size:20
Alignment explanation
Indices: 8524918--8524962 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8524908 CGTCTGAAGC
8524918 AATAAT-CACAACAATACAAA
1 AATAATACACAACAAT-CAAA
* *
8524938 AATAATAGACAACAATCAAT
1 AATAATACACAACAATCAAA
8524958 AATAA
1 AATAA
8524963 AAAACGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.64, C:0.16, G:0.02, T:0.18
Consensus pattern (20 bp):
AATAATACACAACAATCAAA
Found at i:8525125 original size:13 final size:13
Alignment explanation
Indices: 8525107--8525133 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8525097 AGAGCTAAAC
8525107 AACAATTGGAGAA
1 AACAATTGGAGAA
8525120 AACAATTGGAGAA
1 AACAATTGGAGAA
8525133 A
1 A
8525134 TCTCATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15
Consensus pattern (13 bp):
AACAATTGGAGAA
Found at i:8530722 original size:59 final size:58
Alignment explanation
Indices: 8530352--8530819 Score: 545
Period size: 57 Copynumber: 7.8 Consensus size: 58
8530342 TTTTTGTAGA
*
8530352 GAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTGAAAATTTCGATTT-TCAAG
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAAATTT--ATTTCT-AAG
8530411 GAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCCTTTTTTTTTGAAAATTTATTTCTAAG
1 GAAAATTGATACTTTCAACTTTTCCCT-AAAAA-----TTTTTTTTTGAAAATTTATTTCTAAG
* * *
8530474 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTCAGAAATTTCGATTT-TCAAG
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGA-AAATTT--ATTTCT-AAG
* *
8530535 GAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCTTTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCT-AAAAA--TTTTTTTTTGAAAATTTATTTCTAAG
* ** * *
8530595 GAAAATTGATACTTTCAACTTTTCCCCAAAAA-TAGTTTTTGGAATTTTATTTCTAAG
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAAATTTATTTCTAAG
** *
8530652 GAAAATTGATACTTTCAACTTTTCCCTAAAAATGTTTTTTTTTTAAATTTATTTCTGAG
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAAT-TTTTTTTTGAAAATTTATTTCTAAG
* * *
8530711 GAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTCTAAG
1 GAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAAATTTATTTCTAAG
*
8530768 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTTGGAAATTT
1 GAAAATTGATACTTTCAACTTTTCCCT-AAAA-AT-TTTTTTTTGAAAATTT
8530820 TTTATTTTTA
Statistics
Matches: 357, Mismatches: 28, Indels: 46
0.83 0.06 0.11
Matches are distributed among these distances:
57 98 0.27
58 16 0.04
59 85 0.24
60 38 0.11
61 53 0.15
62 6 0.02
63 43 0.12
64 3 0.01
65 15 0.04
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.44
Consensus pattern (58 bp):
GAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAAATTTATTTCTAAG
Found at i:8530800 original size:116 final size:118
Alignment explanation
Indices: 8530352--8530792 Score: 651
Period size: 116 Copynumber: 3.7 Consensus size: 118
8530342 TTTTTGTAGA
* *
8530352 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTCGATTTTCAAGGAAAAT
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTC-ATTTTCAAGGAAAAT
8530417 TGATACTTTCAACTTTTCCTCAAAAACCCCCTTTTTTTTTGAAAATTTATTTCTAAG
65 TGATACTTTCAACTTTTCCTCAAAAA--CCCTTTTTTTTT-AAAATTTATTTCTAAG
*
8530474 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTCAGAAATTTCGATTTTCAAGGAAA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTT-GGAAATTTC-ATTTTCAAGGAAA
* *
8530539 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTGAAAATTTATTTTTAAG
63 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTAAAATTTATTTCTAAG
* *
8530595 GAAAATTGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGG-AATTTTA-TTTCTAAGGAAAAT
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTC-AAGGAAAAT
** * *
8530658 TGATACTTTCAACTTTTCC-CTAAAAA-TGTTTTTTTTTTAAATTTATTTCTGAG
65 TGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTTTTAAAATTTATTTCTAAG
8530711 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTT-A-TTTCTAAGGAAAAT
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTC-AAGGAAAAT
8530774 TGATACTTTCAACTTTTCC
65 TGATACTTTCAACTTTTCC
8530793 CTAAAAATAT
Statistics
Matches: 299, Mismatches: 15, Indels: 16
0.91 0.05 0.05
Matches are distributed among these distances:
116 101 0.34
117 39 0.13
118 5 0.02
119 1 0.00
120 5 0.02
121 49 0.16
122 44 0.15
123 6 0.02
124 49 0.16
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (118 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTAAAATTTATTTCTAAG
Found at i:8531325 original size:19 final size:20
Alignment explanation
Indices: 8531282--8531326 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8531272 AACATCGGTG
* *
8531282 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCA
*
8531302 TCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGGAAATTTTCA
8531321 CCGGAA
1 CCGGAA
8531327 GTTGGCCGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCA
Found at i:8531448 original size:31 final size:31
Alignment explanation
Indices: 8531379--8531449 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
8531369 ACTGGGCAGG
* ** *
8531379 TCGCCGGAAACTTCAATGTTGGCCGGAATTT
1 TCGCCGGAAAATTCAAACTTCGCCGGAATTT
**
8531410 TTACCGGAAAATTCAAACTTCGCCGGAATTT
1 TCGCCGGAAAATTCAAACTTCGCCGGAATTT
8531441 TCGCCGGAA
1 TCGCCGGAA
8531450 TCTGGAAATT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (31 bp):
TCGCCGGAAAATTCAAACTTCGCCGGAATTT
Found at i:8531497 original size:26 final size:24
Alignment explanation
Indices: 8531458--8531511 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
8531448 AATCTGGAAA
*
8531458 TTTCCCAGAAATTTCCAGAAAAAAT
1 TTTCCCAAAAATTTCCA-AAAAAAT
* *
8531483 TTTCGCCAAAAATTTCTAAAAAATT
1 TTTC-CCAAAAATTTCCAAAAAAAT
8531508 TTTC
1 TTTC
8531512 TCACTCCCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.35
Consensus pattern (24 bp):
TTTCCCAAAAATTTCCAAAAAAAT
Found at i:8532018 original size:3 final size:3
Alignment explanation
Indices: 8532010--8532036 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8532000 AAAGATATAC
8532010 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
8532037 GAATACATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8539093 original size:23 final size:22
Alignment explanation
Indices: 8539067--8539128 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
8539057 TTTTGTTTAA
8539067 TTAATATTGGACCATTTAATTTT
1 TTAATATTGG-CCATTTAATTTT
* * *
8539090 TTAATTTTGTGCTATTAAATTTT
1 TTAATATTG-GCCATTTAATTTT
*
8539113 TTAA-ATGGGCCATTTA
1 TTAATATTGGCCATTTA
8539129 TAATTTCAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
21 6 0.19
22 2 0.06
23 22 0.71
24 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (22 bp):
TTAATATTGGCCATTTAATTTT
Found at i:8541152 original size:203 final size:200
Alignment explanation
Indices: 8540823--8541539 Score: 563
Period size: 203 Copynumber: 3.5 Consensus size: 200
8540813 TATATATTTT
* * * * * * *
8540823 ACGTTAATTTTCATCAGCTATTTATGAAAAAAAA-ATTATTGAAGGGTA-AATTTGTCA-CAAA-
1 ACGTTAGTTTTCGTTAGCTATTTAT-AAAAAAAATATCATTGAAAGCTATAA-TAGTCACCAAAT
* * * * * ** * **
8540884 AAATGATAAAATATAATATATTAATGATAAAAA-ATGAATCGTTGCAGTATTAGTGACAAAATTA
64 AAATGATAAAATCTAATACATTAATGA-AAAAAGGTAAATCATCACAATATTAGAAAC-AAATTA
* * * * * * *
8540948 TCATCACTAATGATTGTAAGATAATATCTACTGTAACAATAAAATAAAACGTTACCTTATGCATT
127 TCGTCACAAATGATTGTAAGATAATATCAAATGTAACAATAAAATCAAACGTCACATTATGC-TT
*
8541013 AATTTTTATG
191 TATTTTTATG
* * * *
8541023 AGGTTAGTTTTCGTTAGCTATTTCTAAACAAAAACATCATTGAAAGCTATAATCGTCACCAAATA
1 ACGTTAGTTTTCGTTAGCTATTTATAAA-AAAAATATCATTGAAAGCTATAATAGTCACCAAATA
* *
8541088 AATGATAAAATCTTATACATTAATGAAAAAAGGTAAATCATCACAATATTGATGATAC-AATTAT
65 AATGATAAAATCTAATACATTAATGAAAAAAGGTAAATCATCACAATATT-A-GAAACAAATTAT
* * * * * * * *
8541152 CGTCACGAATGATTATAAGATAATATAAAATATGACAACAAAATCAAATGTCACGTTATGCTTTT
128 CGTCACAAATGATTGTAAGATAATATCAAATGTAACAATAAAATCAAACGTCACATTATGC--TT
*
8541217 TTTTTTATATG
191 TATTTT-TATG
* * * * * * * * *
8541228 ACGTTAATTTTTGTCAGCTATTTATAAAGGAGAATGTCATTTGAAGGTTATAATAATCA-CAAAT
1 ACGTTAGTTTTCGTTAGCTATTTATAAA-AAAAATATCA-TTGAAAGCTATAATAGTCACCAAA-
* * * * *
8541292 TAAATGATAAAATCTAATATATTAATGACAAAAGGTAAATCGTCATAGTATTAGAAACATAATTA
63 TAAATGATAAAATCTAATACATTAATGAAAAAAGGTAAATCATCACAATATTAGAAACA-AATTA
* * * *
8541357 TCGTCACAAATGGTCGCAAGGTAATATCAAATGTAACAAT-AAATCAAACGTCACATTATGCTTT
127 TCGTCACAAATGATTGTAAGATAATATCAAATGTAACAATAAAATCAAACGTCACATTATGCTTT
*
8541421 ATTTTTTTG
192 ATTTTTATG
* * * *
8541430 TTACGTTAGTTTTCATTAGCTATTTAT-GAAAAAATATCATT-AAATGCTATAATTGTCACAAAA
1 --ACGTTAGTTTTCGTTAGCTATTTATAAAAAAAATATCATTGAAA-GCTATAATAGTCACCAAA
* * * * ** * *
8541493 TAAATGATTAAATTTAATATATTAGTGATGAAAGATATATCATCACA
63 TAAATGATAAAATCTAATACATTAATGAAAAAAGGTAAATCATCACA
8541540 GTGTTGGTGG
Statistics
Matches: 406, Mismatches: 93, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
199 3 0.01
200 27 0.07
201 66 0.16
202 24 0.06
203 98 0.24
204 32 0.08
205 60 0.15
206 96 0.24
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (200 bp):
ACGTTAGTTTTCGTTAGCTATTTATAAAAAAAATATCATTGAAAGCTATAATAGTCACCAAATAA
ATGATAAAATCTAATACATTAATGAAAAAAGGTAAATCATCACAATATTAGAAACAAATTATCGT
CACAAATGATTGTAAGATAATATCAAATGTAACAATAAAATCAAACGTCACATTATGCTTTATTT
TTATG
Found at i:8547201 original size:36 final size:36
Alignment explanation
Indices: 8547133--8547211 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
8547123 TGTTTTTTTG
*
8547133 AAAAAAAT-TTTAAAAATTAAAAAGTCTTAAAATTTT
1 AAAAAAATATCTAAAAATTAAAAAGTCTTAAAA-TTT
*
8547169 AAAAGAAATATCTAAAAA-TAAAAA-TGTTAAAATTT
1 AAAA-AAATATCTAAAAATTAAAAAGTCTTAAAATTT
8547204 AAAAAAAT
1 AAAAAAAT
8547212 CTGATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
34 4 0.10
35 7 0.18
36 11 0.28
37 10 0.26
38 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (36 bp):
AAAAAAATATCTAAAAATTAAAAAGTCTTAAAATTT
Found at i:8547639 original size:34 final size:34
Alignment explanation
Indices: 8547601--8547675 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
8547591 TATTTAAATT
* *
8547601 TTAAAAATTTAT-AATTTTTAAAAAATAAATATTG
1 TTAAAAATTT-TGAAATTCTAAAAAATAAATATTG
* * * *
8547635 TTAAATATTTTGAAATTCTAAAAATTAAATTTTT
1 TTAAAAATTTTGAAATTCTAAAAAATAAATATTG
8547669 TTAAAAA
1 TTAAAAA
8547676 AATTAAAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (34 bp):
TTAAAAATTTTGAAATTCTAAAAAATAAATATTG
Found at i:8549158 original size:21 final size:22
Alignment explanation
Indices: 8549100--8549158 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
8549090 TTTATTAATT
8549100 ATTTCATTTTTAAAAATATTAA
1 ATTTCATTTTTAAAAATATTAA
* * *
8549122 ATTTCATTTTTTAATAT-TTTA
1 ATTTCATTTTTAAAAATATTAA
8549143 A-TT-ATTTTTAAAAATA
1 ATTTCATTTTTAAAAATA
8549159 ATATTTCTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 10 0.32
20 2 0.06
21 4 0.13
22 15 0.48
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTCATTTTTAAAAATATTAA
Found at i:8549504 original size:9 final size:9
Alignment explanation
Indices: 8549483--8549511 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8549473 TTATTTTTTA
8549483 AAAAAATTG
1 AAAAAATTG
8549492 -AAAAATTG
1 AAAAAATTG
8549500 AAAAAATTG
1 AAAAAATTG
8549509 AAA
1 AAA
8549512 TTAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (9 bp):
AAAAAATTG
Found at i:8561338 original size:70 final size:70
Alignment explanation
Indices: 8561225--8561355 Score: 235
Period size: 70 Copynumber: 1.9 Consensus size: 70
8561215 TTGGAAATTC
8561225 TAAATTTAGTCATCTATCATGAAAAACTAGAATCATCATGTCTGATTATAAGATCTATCTAAAAG
1 TAAATTTAGTCATCTATCATGAAAAACTAGAATCATCATGTCTGATTATAAGATCTATCTAAAAG
8561290 ATTTT
66 ATTTT
* **
8561295 TAAATTTAGTCATCTATCATGAAAAACTATAATCATCATGTCTGATTATGGGATCTATCTA
1 TAAATTTAGTCATCTATCATGAAAAACTAGAATCATCATGTCTGATTATAAGATCTATCTA
8561356 GAGGATGACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (70 bp):
TAAATTTAGTCATCTATCATGAAAAACTAGAATCATCATGTCTGATTATAAGATCTATCTAAAAG
ATTTT
Found at i:8565671 original size:24 final size:23
Alignment explanation
Indices: 8565644--8565689 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
8565634 TGATGACTTT
8565644 TTTTACTTTTGTGT-CTTTCTTTTG
1 TTTTACTTTT-TGTACTTT-TTTTG
*
8565668 TTTTTCTTTTTGTACTTTTTTT
1 TTTTACTTTTTGTACTTTTTTT
8565690 CTCTTTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.04, C:0.11, G:0.09, T:0.76
Consensus pattern (23 bp):
TTTTACTTTTTGTACTTTTTTTG
Found at i:8568021 original size:44 final size:45
Alignment explanation
Indices: 8567929--8568023 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 45
8567919 TCCAAATAAT
* ** *
8567929 TAAATAAATTGGTACATTTAAAAAATCAAAATCTACAAAAACAAA
1 TAAATAAATTAGTACACATAAAAAATCAAAATCCACAAAAACAAA
*
8567974 TAAATAAATTAGTACACATAAAAAATCATAAA-CCAC-AAAACATA
1 TAAATAAATTAGTACACATAAAAAATCA-AAATCCACAAAAACAAA
8568018 TAAATA
1 TAAATA
8568024 GGTTAGTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
44 13 0.30
45 28 0.64
46 3 0.07
ACGTcount: A:0.61, C:0.13, G:0.03, T:0.23
Consensus pattern (45 bp):
TAAATAAATTAGTACACATAAAAAATCAAAATCCACAAAAACAAA
Found at i:8568668 original size:13 final size:14
Alignment explanation
Indices: 8568650--8568686 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8568640 TTACACTATT
8568650 AAAATATCATAG-A
1 AAAATATCATAGCA
8568663 AAAATATCAT-GCA
1 AAAATATCATAGCA
*
8568676 ATAATATCATA
1 AAAATATCATA
8568687 ATTAAAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 1 0.05
13 20 0.95
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (14 bp):
AAAATATCATAGCA
Found at i:8568711 original size:14 final size:15
Alignment explanation
Indices: 8568689--8568722 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8568679 ATATCATAAT
8568689 TAAAACATGCAAA-A
1 TAAAACATGCAAATA
*
8568703 TAAATCATGCAAATA
1 TAAAACATGCAAATA
8568718 TAAAA
1 TAAAA
8568723 ATCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (15 bp):
TAAAACATGCAAATA
Found at i:8569059 original size:6 final size:6
Alignment explanation
Indices: 8569033--8569118 Score: 66
Period size: 6 Copynumber: 13.7 Consensus size: 6
8569023 TAATTCAATG
* * *
8569033 AAAATA ATAAA-A AATATA AAAATA AAAATT AAAATA AAAAGCA CAAAATA
1 AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA -AAAATA
* * *
8569083 TAAAATA TAAATT AAAATA AAAATG AAAATGA AAAA
1 -AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAA
8569119 CTTACGATCA
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
5 2 0.03
6 41 0.66
7 15 0.24
8 4 0.06
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:8569547 original size:21 final size:20
Alignment explanation
Indices: 8569500--8569552 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 20
8569490 TAAAAGATTT
*
8569500 AAAAAAGTAAACAATAACCC
1 AAAAAATTAAACAATAACCC
8569520 AAAAAATTAAACAATAACCTC
1 AAAAAATTAAACAATAACC-C
8569541 AAAAAATCTAAA
1 AAAAAAT-TAAA
8569553 TTCTACAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 18 0.60
21 8 0.27
22 4 0.13
ACGTcount: A:0.66, C:0.17, G:0.02, T:0.15
Consensus pattern (20 bp):
AAAAAATTAAACAATAACCC
Found at i:8570421 original size:31 final size:29
Alignment explanation
Indices: 8570365--8570427 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
8570355 TAACGAAATT
*
8570365 TAAAATTTAACCTTTTTATTATAATTT-A
1 TAAAATATAACCTTTTTATTATAATTTGA
*
8570393 TAAAATATAATCCTTTTATTATTTTAATTTGA
1 TAAAATATAA-CC-TTT-TTATTATAATTTGA
8570425 TAA
1 TAA
8570428 TTTTAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 9 0.31
29 2 0.07
30 3 0.10
31 11 0.38
32 4 0.14
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (29 bp):
TAAAATATAACCTTTTTATTATAATTTGA
Found at i:8571126 original size:20 final size:20
Alignment explanation
Indices: 8571101--8571139 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8571091 GTTATCAATT
8571101 TTTTAAAATATCAAATTTAA
1 TTTTAAAATATCAAATTTAA
*
8571121 TTTTAAAATATTAAATTTA
1 TTTTAAAATATCAAATTTA
8571140 GTACCTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTAAAATATCAAATTTAA
Found at i:8574070 original size:16 final size:16
Alignment explanation
Indices: 8574049--8574082 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8574039 TTACAAAGAT
* *
8574049 TTTTTTTTTAAATATA
1 TTTTTTTTCAAAAATA
8574065 TTTTTTTTCAAAAATA
1 TTTTTTTTCAAAAATA
8574081 TT
1 TT
8574083 AGTGGCAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTTTTCAAAAATA
Found at i:8574187 original size:18 final size:18
Alignment explanation
Indices: 8574160--8574199 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8574150 GAAATAAAAT
* * *
8574160 AAAATTAAATTAAATTAA
1 AAAATAAAATAAAATGAA
8574178 AAAATAAAATAAAATGAA
1 AAAATAAAATAAAATGAA
8574196 AAAA
1 AAAA
8574200 AAACCTACGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAATAAAATAAAATGAA
Found at i:8574202 original size:23 final size:23
Alignment explanation
Indices: 8574155--8574202 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
8574145 GGTTAGAAAT
* * **
8574155 AAAATAAAATTAAATTAAATTAA
1 AAAATAAAATAAAATGAAAAAAA
8574178 AAAATAAAATAAAATGAAAAAAA
1 AAAATAAAATAAAATGAAAAAAA
8574201 AA
1 AA
8574203 CCTACGATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAATAAAATAAAATGAAAAAAA
Found at i:8575393 original size:118 final size:116
Alignment explanation
Indices: 8575223--8575537 Score: 296
Period size: 120 Copynumber: 2.6 Consensus size: 116
8575213 CAGGATCGAC
* * * *
8575223 TCGAGGTCAAAAGTAAATGATTAGGATGAAATCACGTGTCATAAGAAGTGATCTGTATTGAACCA
1 TCGAGGTCAAAA-TAAATGAATAGGATAAAATCACG-GTCATAAGAAATGATCTGGATTGAACCA
* * *
8575288 AGATCAAGTGATCGAGATA-AAATCACAAAT-AAAAAAAAACGACCAAGATTGAG
64 AGATCAAGTGA-CCAGA-ACAAACCACAAATCAAAAAAAAACGACCAAGACTGAG
* * * *
8575341 TCGAGGTCGAAATAAATGAATAGGATAAAACCACAAGGTCATAAAAAATGATCTGGATT-AAGTC
1 TCGAGGTCAAAATAAATGAATAGGATAAAATCAC--GGTCATAAGAAATGATCTGGATTGAA-CC
* ** * *
8575405 AAAATCAAGTGACCAGAACGAAACCATGAATCAGAAAGAAACGACCAAGACTGAG
63 AAGATCAAGTGACCAGAAC-AAACCACAAATCAAAAAAAAACGACCAAGACTGAG
* * * * *
8575460 TCGAGGTCAAAAATAAATG-ATCGGGATAAAATCATGGGGTCATAAGAAATGATTTGGACTGAGC
1 TCGAGGTC-AAAATAAATGAAT-AGGATAAAATCA--CGGTCATAAGAAATGATCTGGATTGAAC
*
8575524 CAAGATCAAATGAC
62 CAAGATCAAGTGAC
8575538 AGAGACGAAA
Statistics
Matches: 159, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
116 1 0.01
117 25 0.16
118 50 0.31
119 31 0.19
120 51 0.32
121 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (116 bp):
TCGAGGTCAAAATAAATGAATAGGATAAAATCACGGTCATAAGAAATGATCTGGATTGAACCAAG
ATCAAGTGACCAGAACAAACCACAAATCAAAAAAAAACGACCAAGACTGAG
Found at i:8575851 original size:86 final size:87
Alignment explanation
Indices: 8575769--8576409 Score: 514
Period size: 86 Copynumber: 7.4 Consensus size: 87
8575759 GCAGATTTGC
* * * * * *
8575769 AAGATTTCAAGTCTCGCAAAAGTT-TCGAATTCGCAAAGATGCAAGGTTTGCAAAG-ATTTTTAA
1 AAGATTTCAAGTTTCACAAAGGTTCTAG-ATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAA
8575832 ATTCATAAGAAAGAAAGATTCGT
65 ATTCATAAGAAAGAAAGATTCGT
* * *
8575855 AAGA-TTCTAAGTTTCACCAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGC-AAGGATTTTCAG
1 AAGATTTC-AAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAA
*
8575918 ATTCACAAGAAAGAAAGATTCGT
65 ATTCATAAGAAAGAAAGATTCGT
* ** * * *
8575941 AAGATTTCAAGTTTCACAAAGGTTTTAGATTCAAAAAAATGCAAGGTTCG-TAAGAATTTTCAAG
1 AAGATTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAAA
** *
8576005 TTTTTAATAAAGAAAGATTCGT
66 TTCATAAGAAAGAAAGATTCGT
* ** * * * *
8576027 AA-AATTCTAAGTTTTTCAAAGGTTCTAGATTCGTAAAGATGCAAGGTTTGC-AAGAATTTTTAG
1 AAGATTTC-AAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAA
*
8576090 ATTCGTAAGAAAGAAAGATTCGT
65 ATTCATAAGAAAGAAAGATTCGT
* ** * * * *
8576113 AAGACTTCAAGTTTTTCAAAGGTTCTAGATTCACAAAGATGCAAGATTCGC-AAGAATTTTTAAG
1 AAGATTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAAA
** * * *
8576177 TTCGCAAGAATGAAAAATTCAT
66 TTCATAAGAAAGAAAGATTCGT
* * * * * * ** * **
8576199 AAGACTTCAAGTTTAAAAAAGGTTCTAGATTCACAAAGTTACAAAATTAGCAAAG-ATTTTCAGG
1 AAGATTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAAA
*** * *
8576263 TTTGCAAGAAAGAAAGGTTCAT
66 TTCATAAGAAAGAAAGATTCGT
* * * * * * * * * *
8576285 AAGACTCTCAA-TTTCATAAAAGTTCTAGATTCGTAAAGATTCTAGGTTTGTAAAG-ACTTTCAG
1 AAGA-TTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAA
*
8576348 ATTCATAAGAAAGACAA-ATTCAT
65 ATTCATAAGAAAGA-AAGATTCGT
* ** * *
8576371 AAGATTTTAAGTTTTGCAAAGGTGCAAGATTCGCAAAGA
1 AAGATTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGA
8576410 CTTTCAGATT
Statistics
Matches: 455, Mismatches: 88, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
85 14 0.03
86 423 0.93
87 18 0.04
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (87 bp):
AAGATTTCAAGTTTCACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAAGAATTTTCAAA
TTCATAAGAAAGAAAGATTCGT
Found at i:8575973 original size:51 final size:55
Alignment explanation
Indices: 8575906--8576007 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 55
8575896 CAAGGTTCGC
*
8575906 AAGGATTTTCAGATTCACAAGAAA-GAAAGATTCGTAAG-A-TTTCAAGTTTCACA
1 AAGGATTTTCAGATTCA-AAAAAATGAAAGATTCGTAAGAATTTTCAAGTTTCACA
* *
8575959 AAGG-TTTT-AGATTCAAAAAAATGCAAGGTTCGTAAGAATTTTCAAGTTT
1 AAGGATTTTCAGATTCAAAAAAATGAAAGATTCGTAAGAATTTTCAAGTTT
8576008 TTAATAAAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
50 5 0.12
51 19 0.44
52 5 0.12
53 14 0.33
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (55 bp):
AAGGATTTTCAGATTCAAAAAAATGAAAGATTCGTAAGAATTTTCAAGTTTCACA
Found at i:8576025 original size:172 final size:172
Alignment explanation
Indices: 8575739--8576409 Score: 600
Period size: 172 Copynumber: 3.9 Consensus size: 172
8575729 TCCGTAAAGT
* ** * * * * * *
8575739 TTTTCAGATTCACAAGAATGGCAGATTTGCAAGATTTCAAGTCTCGCAAAAGTT-TCGAATTCGC
1 TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAAGTTCTAG-ATTCAC
* *
8575803 AAAGATGCAAGGTTTGCAA-AGATTTTTAAATTCATAAGAAAGAAAGATTCGTAAGATTCTAAGT
65 AAAGATGCAAGGTTCGCAAGA-ATTTTTAAGTTCATAAGAAAGAAAGATTCGTAAGATTCTAAGT
* * *
8575867 TTCACCAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAGGA
129 TTAACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTAGCAAGGA
* * *
8575911 TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAGGTTTTAGATTCAAA
1 TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAAGTTCTAGATTCACA
* * * ** * *
8575976 AAAATGCAAGGTTCGTAAGAATTTTCAAGTTTTTAATAAAGAAAGATTCGTAAAATTCTAAGTTT
66 AAGATGCAAGGTTCGCAAGAATTTTTAAGTTCATAAGAAAGAAAGATTCGTAAGATTCTAAGTTT
** * * *
8576041 TTCAAAGGTTCTAGATTCGTAAAGATGCAAGGTTTGCAAGAA
131 AACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTAGCAAGGA
* ** * ** *
8576083 TTTTTAGATTCGTAAGAAAGAAAGATTCGTAAGACTTCAAGTTTTTCAAAGGTTCTAGATTCACA
1 TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAAGTTCTAGATTCACA
* ** * * *
8576148 AAGATGCAAGATTCGCAAGAATTTTTAAGTTCGCAAGAATGAAAAATTCATAAGACTTC-AAGTT
66 AAGATGCAAGGTTCGCAAGAATTTTTAAGTTCATAAGAAAGAAAGATTCGTAAGA-TTCTAAGTT
* * * * ** *
8576212 TAAAAAAGGTTCTAGATTCACAAAGTTACAAAATTAGCAAAGA
130 TAACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTAGCAAGGA
* ** * * * * **
8576255 TTTTCAGGTTTGCAAGAAAGAAAGGTTCATAAGACTCTCAA-TTTCATAAAAGTTCTAGATTCGT
1 TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGA-TTTCAAGTTTCACAAAAGTTCTAGATTCAC
* * * * * * * *
8576319 AAAGATTCTAGGTTTGTAA-AGA-CTTTCAGATTCATAAGAAAGACAA-ATTCATAAGATTTTAA
65 AAAGATGCAAGGTTCGCAAGA-ATTTTTAAG-TTCATAAGAAAGA-AAGATTCGTAAGATTCTAA
** * *
8576381 GTTTTGCAAAGGTGCAAGATTCGCAAAGA
127 GTTTAACAAAGGTTCTAGATTCGCAAAGA
8576410 CTTTCAGATT
Statistics
Matches: 401, Mismatches: 90, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
171 8 0.02
172 381 0.95
173 12 0.03
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (172 bp):
TTTTCAGATTCACAAGAAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAAGTTCTAGATTCACA
AAGATGCAAGGTTCGCAAGAATTTTTAAGTTCATAAGAAAGAAAGATTCGTAAGATTCTAAGTTT
AACAAAGGTTCTAGATTCGCAAAGATGCAAGGTTAGCAAGGA
Found at i:8576260 original size:258 final size:257
Alignment explanation
Indices: 8575797--8576409 Score: 689
Period size: 258 Copynumber: 2.4 Consensus size: 257
8575787 AAAGTTTCGA
* *
8575797 ATTCGCAAAGATGCAAGGTTTGCAAAGATTTTTAAATTCATAAGAAAGAAAGATTCGTAAGATTC
1 ATTCGTAAAGATGCAAGGTTTGCAAAGATTTTTAGATTCATAAGAAAGAAAGATTCGTAAGATTC
* * * * *
8575862 TAAGTTTCACCAAGGTTCTAGATTCGCAAAGATGCAAGGTTCGCAAGGATTTTCAGATTCACAAG
66 -AAGTTTTACAAAGGTTCTAGATTCGCAAAGATGCAAGATTCGCAAGAATTTTAAGATTCACAAG
* * * * * * * ** * *
8575927 AAAGAAAGATTCGTAAGATTTCAAGTTTCACAAAGGTTTTAGATTCAAAAAAATGCAAGGTTCGT
130 AAAGAAAAATTCATAAGACTTCAAGTTTAAAAAAGGTTCTAGATTCAAAAAAATACAAAATTAGA
** * * * * *
8575992 AAGAATTTTCAAGTTTTTAATAAAGAAAGATTCGTAAAATTCT-AAGTTT-TTCAAAGGTTCTAG
195 AAGAATTTTCAAGTTTGCAAGAAAGAAAGATTCATAAAACTCTCAA-TTTCAT-AAAAGTTCTAG
*
8576055 ATTCGTAAAGATGCAAGGTTTGC-AAGAATTTTTAGATTCGTAAGAAAGAAAGATTCGTAAGACT
1 ATTCGTAAAGATGCAAGGTTTGCAAAG-ATTTTTAGATTCATAAGAAAGAAAGATTCGTAAGA-T
* * *
8576119 TCAAGTTTTTCAAAGGTTCTAGATTCACAAAGATGCAAGATTCGCAAGAATTTTTAAG-TTCGCA
64 TCAAGTTTTACAAAGGTTCTAGATTCGCAAAGATGCAAGATTCGCAAGAA-TTTTAAGATTCACA
* * **
8576183 AGAATGAAAAATTCATAAGACTTCAAGTTTAAAAAAGGTTCTAGATTCACAAAGTTACAAAATTA
128 AGAAAGAAAAATTCATAAGACTTCAAGTTTAAAAAAGGTTCTAGATTCAAAAAAATACAAAATTA
* * *
8576248 GCAAAG-ATTTTCAGGTTTGCAAGAAAGAAAGGTTCATAAGACTCTCAATTTCATAAAAGTTCTA
193 G-AAAGAATTTTCAAGTTTGCAAGAAAGAAAGATTCATAAAACTCTCAATTTCATAAAAGTTCTA
8576312 G
257 G
* * * * * *
8576313 ATTCGTAAAGATTCTAGGTTTGTAAAGACTTTCAGATTCATAAGAAAGACAA-ATTCATAAGATT
1 ATTCGTAAAGATGCAAGGTTTGCAAAGATTTTTAGATTCATAAGAAAGA-AAGATTCGTAAGA-T
* * * *
8576377 TTAAGTTTTGCAAAGGTGCAAGATTCGCAAAGA
64 TCAAGTTTTACAAAGGTTCTAGATTCGCAAAGA
8576410 CTTTCAGATT
Statistics
Matches: 298, Mismatches: 49, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
257 3 0.01
258 275 0.92
259 20 0.07
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (257 bp):
ATTCGTAAAGATGCAAGGTTTGCAAAGATTTTTAGATTCATAAGAAAGAAAGATTCGTAAGATTC
AAGTTTTACAAAGGTTCTAGATTCGCAAAGATGCAAGATTCGCAAGAATTTTAAGATTCACAAGA
AAGAAAAATTCATAAGACTTCAAGTTTAAAAAAGGTTCTAGATTCAAAAAAATACAAAATTAGAA
AGAATTTTCAAGTTTGCAAGAAAGAAAGATTCATAAAACTCTCAATTTCATAAAAGTTCTAG
Found at i:8576327 original size:17 final size:17
Alignment explanation
Indices: 8576303--8576340 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8576293 CAATTTCATA
8576303 AAAG-TTCTAGATTCGT
1 AAAGATTCTAGATTCGT
* *
8576319 AAAGATTCTAGGTTTGT
1 AAAGATTCTAGATTCGT
8576336 AAAGA
1 AAAGA
8576341 CTTTCAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (17 bp):
AAAGATTCTAGATTCGT
Found at i:8577489 original size:41 final size:38
Alignment explanation
Indices: 8577414--8577504 Score: 101
Period size: 41 Copynumber: 2.3 Consensus size: 38
8577404 TCACCTTGTG
***
8577414 TTTTTTTTTTGTTTTGCTTTTTTTTTATTTTTTTTCCC
1 TTTTTTTTTTGTTTTGCTTTTTTTTTAAAATTTTTCCC
*
8577452 TTTTTTGTTTTGCTTTTTGCTTTTTTTTTAAAATTTTTCTCA
1 TTTTTT-TTTTG--TTTTGCTTTTTTTTTAAAATTTTTC-CC
8577494 TTTCTTTTTTT
1 TTT-TTTTTTT
8577505 TCTTTTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
38 6 0.14
39 5 0.11
41 22 0.50
42 8 0.18
43 3 0.07
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78
Consensus pattern (38 bp):
TTTTTTTTTTGTTTTGCTTTTTTTTTAAAATTTTTCCC
Found at i:8577843 original size:18 final size:17
Alignment explanation
Indices: 8577820--8577853 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
8577810 CCTATCATTT
8577820 TTCTTTTTTCTTTTTTGC
1 TTCTTTTTT-TTTTTTGC
8577838 TTCTTTTTTTTTTTTG
1 TTCTTTTTTTTTTTTG
8577854 GGTGGAGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (17 bp):
TTCTTTTTTTTTTTTGC
Found at i:8577929 original size:40 final size:41
Alignment explanation
Indices: 8577843--8577929 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
8577833 TTTGCTTCTT
* *
8577843 TTTTTTTTTTGGGTGGAGCACATTGGCATTTTGCTCAATC-A
1 TTTTTTTTTT-GGTGGAGCACATTGACATTTTGCCCAATCAA
* * *
8577884 TTTTTTTTTTTGTGGAGGACATTGACATTTTGCCCCATCAA
1 TTTTTTTTTTGGTGGAGCACATTGACATTTTGCCCAATCAA
8577925 TTTTT
1 TTTTT
8577930 CATTTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 24 0.60
41 16 0.40
ACGTcount: A:0.17, C:0.15, G:0.18, T:0.49
Consensus pattern (41 bp):
TTTTTTTTTTGGTGGAGCACATTGACATTTTGCCCAATCAA
Found at i:8581815 original size:18 final size:16
Alignment explanation
Indices: 8581786--8581820 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
8581776 ATTTCTTCTA
8581786 TCATTTTTATTTTTAT
1 TCATTTTTATTTTTAT
8581802 TCATTCTTTCATTTTTAT
1 TCATT-TTT-ATTTTTAT
8581820 T
1 T
8581821 TTCTTGCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 3 0.18
18 9 0.53
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (16 bp):
TCATTTTTATTTTTAT
Found at i:8585300 original size:19 final size:17
Alignment explanation
Indices: 8585278--8585321 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
8585268 TTTTACTTAA
8585278 AAAAAAAGAAACAAGAAAG
1 AAAAAAAGAAA-AA-AAAG
*
8585297 AAAAAAATAAAAAAAAG
1 AAAAAAAGAAAAAAAAG
8585314 AGAAAAAA
1 A-AAAAAA
8585322 AAGGATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 8 0.35
19 10 0.43
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.02
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAAG
Found at i:8586441 original size:114 final size:113
Alignment explanation
Indices: 8586172--8586442 Score: 258
Period size: 114 Copynumber: 2.4 Consensus size: 113
8586162 AAAAAATATG
* * * * * * * ** *
8586172 AAATTCTCAAAAGTTATGAAACCTTTACTTAGAGGAGTTTTTTAAAGTTGTGGAGTTTCTATTTA
1 AAATTTTCAAAAGTTGTTAAGCC-TTACTTAAAGGAGTTTTTTAAAATTGTAGAGCCTCTACTTA
* ** *
8586237 AAGGAGCTTTGATTATCAAGATTTGTAAGTCTTCGAGGCAAACTAATTT
65 AAGGAGCTTTCATTATCAAGATTCATAAGTCTTCGAAGCAAACTAATTT
* * * * * *
8586286 AAGTTTTTAAAAGTTGTTAAGCCTTTCTTCAAAGAAATTTTTTAAAATTGTAGAGCCTCTGCTTA
1 AAATTTTCAAAAGTTGTTAAGCCTTACTT-AAAGGAGTTTTTTAAAATTGTAGAGCCTCTACTTA
* * ** *
8586351 GATGAG-TATTCATTATCAAGATTCATAAGTCTTTTAAGCAGAA-TATTTT
65 AAGGAGCT-TTCATTATCAAGATTCATAAGTCTTCGAAGCA-AACTAATTT
8586400 AAATTTTCAAAAGTTGTTAAGCCTCTACTTAAAGGAGTTTTTT
1 AAATTTTCAAAAGTTGTTAAGCCT-TACTTAAAGGAGTTTTTT
8586443 TTTTTTAATT
Statistics
Matches: 123, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
113 6 0.05
114 111 0.90
115 6 0.05
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (113 bp):
AAATTTTCAAAAGTTGTTAAGCCTTACTTAAAGGAGTTTTTTAAAATTGTAGAGCCTCTACTTAA
AGGAGCTTTCATTATCAAGATTCATAAGTCTTCGAAGCAAACTAATTT
Found at i:8586474 original size:48 final size:48
Alignment explanation
Indices: 8586396--8586489 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
8586386 AAGCAGAATA
* *
8586396 TTTTAAATTTTCAAAAGTTGTTAAGCCTCTACTTAAAGGAGTTTTTTT
1 TTTTAAATTTTCAAAAGTTATCAAGCCTCTACTTAAAGGAGTTTTTTT
* * * *
8586444 TTTTTAATTTTCAAAAGTTATCAAGTCTCTACTTAGATGAGTTTTT
1 TTTTAAATTTTCAAAAGTTATCAAGCCTCTACTTAAAGGAGTTTTT
8586490 CAAATTTTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.49
Consensus pattern (48 bp):
TTTTAAATTTTCAAAAGTTATCAAGCCTCTACTTAAAGGAGTTTTTTT
Found at i:8587930 original size:3 final size:3
Alignment explanation
Indices: 8587917--8587991 Score: 61
Period size: 3 Copynumber: 25.7 Consensus size: 3
8587907 ACTTTAAGAA
*
8587917 AAT AAT AAAT AAT AA- AAGG AAT AAAT AA- AAT AAT AAT AAT AAT -AT
1 AAT AAT -AAT AAT AAT AA-T AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* *
8587962 AAT AA- AAT AAT AGT AA- AAT AAT AAC AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8587992 AATTTCAAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
2 10 0.17
3 41 0.69
4 8 0.14
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:8587960 original size:30 final size:33
Alignment explanation
Indices: 8587917--8587991 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 33
8587907 ACTTTAAGAA
* *
8587917 AATAATAA-ATAATAAAAGGAATAAATAAAATAAT
1 AATAATAATATAATAAAA-TAAT-AGTAAAATAAT
8587951 AATAATAATATAATAAAATAATAGTAAAATAAT
1 AATAATAATATAATAAAATAATAGTAAAATAAT
*
8587984 AACAATAA
1 AATAATAA
8587992 AATTTCAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 17 0.46
34 11 0.30
35 9 0.24
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.25
Consensus pattern (33 bp):
AATAATAATATAATAAAATAATAGTAAAATAAT
Found at i:8588114 original size:17 final size:18
Alignment explanation
Indices: 8588092--8588131 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
8588082 ATATTTATTT
8588092 TAAAACAAA-ATAAAAAA
1 TAAAACAAAGATAAAAAA
8588109 TAAAACAAATGATAAAAAA
1 TAAAACAAA-GATAAAAAA
8588128 TAAA
1 TAAA
8588132 TAAACATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.15
Consensus pattern (18 bp):
TAAAACAAAGATAAAAAA
Found at i:8588454 original size:12 final size:12
Alignment explanation
Indices: 8588439--8588521 Score: 76
Period size: 12 Copynumber: 6.9 Consensus size: 12
8588429 TAAGTAAAAT
*
8588439 AATAATAAAAAC
1 AATAATAATAAC
8588451 AATAATAATAAC
1 AATAATAATAAC
* * *
8588463 AACAACAACAAC
1 AATAATAATAAC
* * *
8588475 AACAACAACAAC
1 AATAATAATAAC
* *
8588487 AACAATAATAAT
1 AATAATAATAAC
*
8588499 AATAATAATAAT
1 AATAATAATAAC
8588511 AATAATAATAA
1 AATAATAATAA
8588522 TAATTATTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 63 1.00
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:8588466 original size:3 final size:3
Alignment explanation
Indices: 8588460--8588491 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8588450 CAATAATAAT
8588460 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
8588492 TAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:8588496 original size:3 final size:3
Alignment explanation
Indices: 8588490--8588525 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8588480 CAACAACAAC
8588490 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8588526 TATTATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8588530 original size:3 final size:3
Alignment explanation
Indices: 8588524--8588571 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8588514 AATAATAATA
8588524 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8588572 TTTCAGTAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8588837 original size:17 final size:16
Alignment explanation
Indices: 8588815--8588848 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8588805 AAATTTTACC
8588815 AGAATAATAAAAAATTT
1 AGAATAA-AAAAAATTT
*
8588832 AGAATAAAAAAATTTT
1 AGAATAAAAAAAATTT
8588848 A
1 A
8588849 ATAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
AGAATAAAAAAAATTT
Found at i:8588851 original size:14 final size:15
Alignment explanation
Indices: 8588818--8588854 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
8588808 TTTTACCAGA
8588818 ATAAT-AAAAAATTT
1 ATAATAAAAAAATTT
*
8588832 AGAATAAAAAAATTT
1 ATAATAAAAAAATTT
8588847 -TAATAAAA
1 ATAATAAAA
8588855 TTATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
ATAATAAAAAAATTT
Found at i:8589761 original size:14 final size:15
Alignment explanation
Indices: 8589744--8589777 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8589734 ATACCATAAT
8589744 TAAAACATGCAAA-A
1 TAAAACATGCAAATA
*
8589758 TAAATCATGCAAATA
1 TAAAACATGCAAATA
8589773 TAAAA
1 TAAAA
8589778 ATCATTCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (15 bp):
TAAAACATGCAAATA
Found at i:8589818 original size:24 final size:25
Alignment explanation
Indices: 8589772--8589819 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
8589762 TCATGCAAAT
* * *
8589772 ATAAAAATCATTCCCAAATATTATA
1 ATAAAAATCATTACAAAAAATTATA
8589797 ATAAAAATCA-TACAAAAAATTAT
1 ATAAAAATCATTACAAAAAATTAT
8589820 GCAAAGATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.29
Consensus pattern (25 bp):
ATAAAAATCATTACAAAAAATTATA
Found at i:8589890 original size:58 final size:58
Alignment explanation
Indices: 8589828--8589955 Score: 140
Period size: 58 Copynumber: 2.2 Consensus size: 58
8589818 ATGCAAAGAT
*
8589828 ATCAT-AAAATAAACA-GTATA-AAAATCATGATGTAA-AAATATTATGCAAATAAATCATG
1 ATCATGAAAATAAA-ATCTATACAAAAT-ATGATGTAATAAATA--ATGCAAATAAATCATG
* *
8589886 ATCATGCAAATAAAATCTATACAAAATATTATGTAATAAATAATGCAAATAAATCA-G
1 ATCATGAAAATAAAATCTATACAAAATATGATGTAATAAATAATGCAAATAAATCATG
*
8589943 ATACATGCAAATA
1 AT-CATGAAAATA
8589956 TTATAATTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
57 3 0.05
58 30 0.48
59 19 0.31
60 10 0.16
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (58 bp):
ATCATGAAAATAAAATCTATACAAAATATGATGTAATAAATAATGCAAATAAATCATG
Found at i:8589899 original size:59 final size:58
Alignment explanation
Indices: 8589844--8589955 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 58
8589834 AAATAAACAG
8589844 TATA-AAAATCATGATGTAA-AAATATTATGCAAATAAATCATGAT-CATGCAAATAAAATC
1 TATACAAAAT-ATGATGTAATAAATA--ATGCAAATAAATCA-GATACATGCAAATAAAATC
*
8589903 TATACAAAATATTATGTAATAAATAATGCAAATAAATCAGATACATGCAAATA
1 TATACAAAATATGATGTAATAAATAATGCAAATAAATCAGATACATGCAAATA
8589956 TTATAATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
57 3 0.06
58 24 0.49
59 12 0.24
60 10 0.20
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.29
Consensus pattern (58 bp):
TATACAAAATATGATGTAATAAATAATGCAAATAAATCAGATACATGCAAATAAAATC
Found at i:8590086 original size:7 final size:7
Alignment explanation
Indices: 8590074--8590165 Score: 77
Period size: 7 Copynumber: 13.1 Consensus size: 7
8590064 CCAAAATAAT
8590074 AATAAAA
1 AATAAAA
8590081 AATAAAA
1 AATAAAA
8590088 AATATATTAA
1 AATA-A--AA
8590098 AA-AACAA
1 AATAA-AA
8590105 AATAATAA
1 AATAA-AA
*
8590113 AATCAAA
1 AATAAAA
*
8590120 AATCAAA
1 AATAAAA
8590127 AATAAAA
1 AATAAAA
8590134 AAT--AA
1 AATAAAA
8590139 AATAAAA
1 AATAAAA
8590146 AAT--AA
1 AATAAAA
8590151 AATAAAA
1 AATAAAA
*
8590158 AAGAAAA
1 AATAAAA
8590165 A
1 A
8590166 CATGTGCCCG
Statistics
Matches: 72, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
5 10 0.14
7 47 0.65
8 10 0.14
9 1 0.01
10 4 0.06
ACGTcount: A:0.79, C:0.03, G:0.01, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:8590140 original size:12 final size:12
Alignment explanation
Indices: 8590066--8590164 Score: 85
Period size: 12 Copynumber: 7.8 Consensus size: 12
8590056 TAATTCAACC
8590066 AAAATAATAATAA
1 AAAATAA-AATAA
8590079 AAAATAAAA-AA
1 AAAATAAAATAA
*
8590090 TATATTAA-AAAACAA
1 -A-A--AATAAAATAA
*
8590105 AATAATAAAATCA
1 AA-AATAAAATAA
8590118 AAAATCAAAAATAA
1 AAAAT--AAAATAA
8590132 AAAATAAAATAA
1 AAAATAAAATAA
8590144 AAAATAAAATAA
1 AAAATAAAATAA
*
8590156 AAAAGAAAA
1 AAAATAAAA
8590165 ACATGTGCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 17
0.78 0.04 0.18
Matches are distributed among these distances:
11 2 0.03
12 36 0.49
13 16 0.22
14 16 0.22
15 4 0.05
ACGTcount: A:0.79, C:0.03, G:0.01, T:0.17
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:8590571 original size:20 final size:20
Alignment explanation
Indices: 8590548--8590601 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
8590538 ACCTAAAAAC
8590548 AATCCAAAAAATTAAACAAA
1 AATCCAAAAAATTAAACAAA
* *
8590568 AATCGAGAAAATTAAACAAA
1 AATCCAAAAAATTAAACAAA
*
8590588 AACCACAAAAAATT
1 AATC-CAAAAAATT
8590602 CAATTTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.67, C:0.15, G:0.04, T:0.15
Consensus pattern (20 bp):
AATCCAAAAAATTAAACAAA
Found at i:8593520 original size:17 final size:17
Alignment explanation
Indices: 8593491--8593524 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8593481 ATTTAATATC
8593491 ATAAAATTTATTTGATTA
1 ATAAAATTTATTT-ATTA
8593509 ATAAAA-TTATTTATTA
1 ATAAAATTTATTTATTA
8593525 TTTGAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 6 0.38
18 6 0.38
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
ATAAAATTTATTTATTA
Found at i:8597731 original size:17 final size:17
Alignment explanation
Indices: 8597709--8597742 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8597699 CACACAATTT
8597709 GTTGAAT-ATGACATTCA
1 GTTGAATGA-GACATTCA
8597726 GTTGAATGAGACATTCA
1 GTTGAATGAGACATTCA
8597743 TGATTAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (17 bp):
GTTGAATGAGACATTCA
Found at i:8602939 original size:60 final size:58
Alignment explanation
Indices: 8602811--8602968 Score: 230
Period size: 60 Copynumber: 2.7 Consensus size: 58
8602801 TTGTGTAGGA
** *
8602811 AAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTCAAAATTTATTCTTAAGG
*
8602868 AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCAAAACTTTATTCTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTCAAAA-TTTATTCTTAAGG
8602928 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT
8602969 TTGGAAAATT
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
56 2 0.02
57 29 0.32
59 10 0.11
60 50 0.55
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTCAAAATTTATTCTTAAGG
Found at i:8603024 original size:4 final size:4
Alignment explanation
Indices: 8602996--8603139 Score: 52
Period size: 4 Copynumber: 34.8 Consensus size: 4
8602986 TATTTGAAAA
* *
8602996 AAAT AAA- ATAAT AAAA AATAT AAAT AAAT -AAT AAA- AAAT AAAGA AAAGT
1 AAAT AAAT A-AAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAA-T AAA-T
* * *
8603045 AAA- ACAA- AAAT AAAT ATAA- AACT AAGAT AAAA AGAAT -ATT AAAT
1 AAAT A-AAT AAAT AAAT A-AAT AAAT AA-AT AAAT A-AAT AAAT AAAT
* *
8603089 AAACCT -AAT ATAAT AAAT AAAAA AAAT AAAAT AAAT AAAT AAAC AAAT
1 AAA--T AAAT A-AAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT AAAT
8603137 AAA
1 AAA
8603140 AAAAATTCAA
Statistics
Matches: 107, Mismatches: 14, Indels: 38
0.67 0.09 0.24
Matches are distributed among these distances:
3 14 0.13
4 61 0.57
5 31 0.29
6 1 0.01
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:8603064 original size:17 final size:19
Alignment explanation
Indices: 8602996--8603066 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 19
8602986 TATTTGAAAA
*
8602996 AAATAAAATAATAAAAAATAT
1 AAAT-AAATAATAAAACA-AT
8603017 AAATAAATAATAAAA-AAT
1 AAATAAATAATAAAACAAT
* *
8603035 AAAGAAA-AGTAAAACAA-
1 AAATAAATAATAAAACAAT
8603052 AAATAAAT-ATAAAAC
1 AAATAAATAATAAAAC
8603067 TAAGATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
17 18 0.41
18 10 0.23
19 1 0.02
20 11 0.25
21 4 0.09
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (19 bp):
AAATAAATAATAAAACAAT
Found at i:8603077 original size:12 final size:10
Alignment explanation
Indices: 8602992--8603145 Score: 56
Period size: 9 Copynumber: 14.9 Consensus size: 10
8602982 TTTTTATTTG
8602992 AAAA-AAAT-
1 AAAATAAATA
8603000 AAAAT-AATA
1 AAAATAAATA
*
8603009 AAAA-ATATA
1 AAAATAAATA
8603018 AATAA-ATAATAA
1 AA-AATA-AAT-A
*
8603030 AAAATAAAGA
1 AAAATAAATA
* *
8603040 AAAGTAAAACA
1 AAAAT-AAATA
8603051 AAAATAAATA
1 AAAATAAATA
8603061 TAAAACTAAGATA
1 -AAAA-TAA-ATA
*
8603074 AAAA-GAATA
1 AAAATAAATA
*
8603083 TTAAATAAACCTA
1 -AAAATAAA--TA
8603096 ATATAATAAATA
1 A-A-AATAAATA
8603108 AAAA-AAAT-
1 AAAATAAATA
8603116 AAAATAAATAA
1 AAAATAAAT-A
*
8603127 ATAAACAAATA
1 A-AAATAAATA
8603138 AAAA-AAAT
1 AAAATAAAT
8603146 TCAAAGAAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 41
0.68 0.07 0.25
Matches are distributed among these distances:
8 11 0.10
9 24 0.21
10 21 0.19
11 24 0.21
12 21 0.19
13 6 0.05
14 6 0.05
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (10 bp):
AAAATAAATA
Found at i:8603116 original size:18 final size:18
Alignment explanation
Indices: 8602992--8603127 Score: 89
Period size: 18 Copynumber: 7.1 Consensus size: 18
8602982 TTTTTATTTG
8602992 AAAAAAATAAAAT-AATA
1 AAAAAAATAAAATAAATA
*
8603009 AAAAATAT-AAATAAATA
1 AAAAAAATAAAATAAATA
8603026 ATAAAAAATAAAGA-AAAGTAA
1 A-AAAAAATAAA-ATAAA-T-A
8603047 AACAAAAATAAATATAAAACTA
1 AA-AAAAATAAA-AT-AAA-TA
* *
8603069 AGATAAAAAGAATATTAAATA
1 A-A-AAAAATAA-AATAAATA
*** *
8603090 AACCTAATATAATAAATA
1 AAAAAAATAAAATAAATA
8603108 AAAAAAATAAAATAAATA
1 AAAAAAATAAAATAAATA
8603126 AA
1 AA
8603128 TAAACAAATA
Statistics
Matches: 91, Mismatches: 17, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
16 4 0.04
17 12 0.13
18 29 0.32
19 8 0.09
20 4 0.04
21 15 0.16
22 5 0.05
23 13 0.14
24 1 0.01
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
AAAAAAATAAAATAAATA
Found at i:8604463 original size:10 final size:9
Alignment explanation
Indices: 8604448--8604510 Score: 63
Period size: 10 Copynumber: 6.4 Consensus size: 9
8604438 TCATTTTTTA
8604448 TTTTTTGTAT
1 TTTTTTGT-T
8604458 TTTTTTGTT
1 TTTTTTGTT
8604467 GTTTTTTGTTGT
1 -TTTTTTG-T-T
8604479 TTTTTTGTT
1 TTTTTTGTT
* *
8604488 TTTATTATT
1 TTTTTTGTT
8604497 ATTTTTTGTT
1 -TTTTTTGTT
8604507 TTTT
1 TTTT
8604511 GACCAAAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
9 13 0.29
10 23 0.51
11 8 0.18
12 1 0.02
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:8604473 original size:20 final size:19
Alignment explanation
Indices: 8604441--8604511 Score: 83
Period size: 19 Copynumber: 3.7 Consensus size: 19
8604431 AACATTGTCA
*
8604441 TTTTTTATTTTTTGTATTT
1 TTTTTTGTTTTTTGTATTT
*
8604460 TTTTGTTGTTTTTTGT-TGT
1 TTTT-TTGTTTTTTGTATTT
*
8604479 TTTTTTGTTTTTAT-TATTA
1 TTTTTTGTTTTT-TGTATTT
8604498 TTTTTTGTTTTTTG
1 TTTTTTGTTTTTTG
8604512 ACCAAAGCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.23
19 24 0.55
20 10 0.23
ACGTcount: A:0.07, C:0.00, G:0.11, T:0.82
Consensus pattern (19 bp):
TTTTTTGTTTTTTGTATTT
Found at i:8604658 original size:41 final size:40
Alignment explanation
Indices: 8604543--8605430 Score: 1189
Period size: 41 Copynumber: 22.1 Consensus size: 40
8604533 ACTTTGGAAC
8604543 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8604583 TAAATTGCTCCTCTAAACAGAGGTACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGAACTTT-GAAAAG
8604625 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8604665 TAAATTGCTCCTTTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8604704 TAAATTGCTCCTCTAAACAGAGGTACCACG-ACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGAACTTTGAAAAG
8604745 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8604784 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAG
*
8604825 TAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAG
* *
8604865 TAAATTGCTCTTCTAAACAGAGGC-ACCATGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGA--ACTTTGAAAAG
*
8604906 AAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
8604948 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8604987 TAAATTGCTCCTCTAAACAGAGGTACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGAACTTT-GAAAAG
8605029 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
8605068 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAG
*
8605109 AAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
8605151 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8605190 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8605229 TAAATTGCTCCTCTAAACAGAGGC-ACTAGGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAAC--GAACTTTGAAAAG
*
8605270 TAAATTGCTCATCTAAACAGAGGCAACGAAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-AACTTTGAAAAG
*
8605311 TAAATTG---CTC----CAGAGGTAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
* *
8605343 TAAATTGCTCCTCTAAACAGAGGC-ACCATGACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGA--ACTTTGAAAAG
8605384 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
8605426 TAAAT
1 TAAAT
8605431 ACTACTAGAC
Statistics
Matches: 770, Mismatches: 30, Indels: 94
0.86 0.03 0.11
Matches are distributed among these distances:
32 15 0.02
33 3 0.00
34 10 0.01
35 3 0.00
38 9 0.01
39 201 0.26
40 133 0.17
41 258 0.34
42 134 0.17
44 4 0.01
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (40 bp):
TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
Found at i:8604899 original size:81 final size:81
Alignment explanation
Indices: 8604521--8605430 Score: 1241
Period size: 81 Copynumber: 11.3 Consensus size: 81
8604511 GACCAAAGCT
* * *
8604521 AGAGGCACCATGACTTTG-GAACTAAATTGCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAGT
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGT
8604584 AAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAAC
*
8604601 AGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACGAACTTTGAAAAG
1 AGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAG
*
8604665 TAAATTGCTCCTTTAAAC
64 TAAATTGCTCCTCTAAAC
*
8604683 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAG
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAG
8604745 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
*
8604763 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAG
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAG
8604825 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
* * * *
8604843 AGAGGCA-CACGACTTTGGAAAGTAAATTGCTCTTCTAAACAGAGGCACCATGACTTTGAAAAGA
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGT
8604907 AAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAAC
8604924 AGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACGAAC-TTGAAAAG
1 AGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAG
8604987 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
*
8605005 AGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACGAAC-TTGAAAAG
1 AGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAG
8605068 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
*
8605086 AGAGGCACCACGACTTTGAAAAGAAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACGACTTT-GAAAAG
8605151 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
*
8605169 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACGAAC-TTGGAAAG
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAG
8605229 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
* * *
8605247 AGAGGCACTAGGACTTTGAAAAGTAAATTGCTCATCTAAACAGAGGCA-ACGAAACTTTGAAAAG
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACACG--ACTTTGAAAAG
8605311 TAAATTG---CTC----C
64 TAAATTGCTCCTCTAAAC
* * *
8605322 AGAGGTA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGGAAAG
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAG
8605384 TAAATTGCTCCTCTAAAC
64 TAAATTGCTCCTCTAAAC
8605402 AGAGGCACCACGACTTTGGAAAAGTAAAT
1 AGAGGCACCACGACTTT-GAAAAGTAAAT
8605431 ACTACTAGAC
Statistics
Matches: 762, Mismatches: 33, Indels: 67
0.88 0.04 0.08
Matches are distributed among these distances:
73 51 0.07
74 2 0.00
75 9 0.01
76 3 0.00
78 30 0.04
79 40 0.05
80 211 0.28
81 243 0.32
82 102 0.13
83 71 0.09
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (81 bp):
AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACACGACTTTGAAAAGTA
AATTGCTCCTCTAAAC
Found at i:8604936 original size:122 final size:121
Alignment explanation
Indices: 8604521--8605430 Score: 1285
Period size: 122 Copynumber: 7.6 Consensus size: 121
8604511 GACCAAAGCT
* * *
8604521 AGAGGCACCATGACTTTG-GAACTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTA
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTA
*
8604585 AATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAAC
66 AATTGCTCCTCTAAACAGAGGCA-CACGACTTT-GAAAAGTAAATTGCTCCTCTAAAC
*
8604643 AGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTTTAAACAGAGGCAACGAAC-TTGAAAAGT
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGT
*
8604705 AAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
*
8604763 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAA
1 AGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAA
* *
8604824 GTAAATTGCTCCTCTAAACAGAGGCACACGACTTTGGAAAGTAAATTGCTCTTCTAAAC
63 GTAAATTGCTCCTCTAAACAGAGGCACACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
* *
8604883 AGAGGCACCATGACTTTGAAAAGAAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAA
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAA
8604947 GTAAATTGCTCCTCTAAACAGAGGCA-ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAAC
63 GTAAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATTGCTCCTCTAAAC
*
8605005 AGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAGT
1 AGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGT
*
8605069 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGAAAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAACAGAGGCA-CACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
8605127 AGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAGT
1 AGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGT
*
8605191 AAATTGCTCCTCTAAACAGAGGCA-ACGAAC-TTGGAAAGTAAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATTGCTCCTCTAAAC
* * *
8605247 AGAGGCACTAGGACTTTGAAAAGTAAATTGCTCATCTAAACAGAGGCAACGAAACTTTGAAAAGT
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACG-AACTTTGAAAAGT
*
8605312 AAATTG---CTC----CAGAGGTA-ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAAC
65 AAATTGCTCCTCTAAACAGAGGCACACG-ACTTTGAAAAGTAAATTGCTCCTCTAAAC
* *
8605361 AGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAA
1 AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAA
8605425 GTAAAT
63 GTAAAT
8605431 ACTACTAGAC
Statistics
Matches: 737, Mismatches: 30, Indels: 49
0.90 0.04 0.06
Matches are distributed among these distances:
114 87 0.12
115 11 0.01
116 3 0.00
118 3 0.00
119 65 0.09
120 155 0.21
121 109 0.15
122 242 0.33
123 62 0.08
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (121 bp):
AGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTA
AATTGCTCCTCTAAACAGAGGCACACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
Found at i:8605344 original size:32 final size:34
Alignment explanation
Indices: 8605287--8605353 Score: 111
Period size: 32 Copynumber: 2.0 Consensus size: 34
8605277 CTCATCTAAA
8605287 CAGAGGCAACGAAACTTTGAAAAGTAAATTGCTC
1 CAGAGGCAACGAAACTTTGAAAAGTAAATTGCTC
*
8605321 CAGAGGTAACG-AAC-TTGAAAAGTAAATTGCTC
1 CAGAGGCAACGAAACTTTGAAAAGTAAATTGCTC
8605353 C
1 C
8605354 TCTAAACAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 19 0.59
33 3 0.09
34 10 0.31
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (34 bp):
CAGAGGCAACGAAACTTTGAAAAGTAAATTGCTC
Found at i:8606671 original size:15 final size:15
Alignment explanation
Indices: 8606647--8606687 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8606637 CAATTTTGGA
8606647 TTTC-TTTTTTTATT
1 TTTCATTTTTTTATT
*
8606661 TTTCATTTTTTCATT
1 TTTCATTTTTTTATT
*
8606676 TCTCATTTTTTT
1 TTTCATTTTTTT
8606688 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCATTTTTTTATT
Found at i:8606686 original size:17 final size:17
Alignment explanation
Indices: 8606666--8606722 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 17
8606656 TTATTTTTCA
*
8606666 TTTTTTCATTTCTCATT
1 TTTTTTCTTTTCTCATT
* *
8606683 TTTTTTCTTTTTTTCTTTT
1 TTTTTTC-TTTTCTC-ATT
8606702 TTTTTCTCTTTTCTCATT
1 TTTTT-TCTTTTCTCATT
8606720 TTT
1 TTT
8606723 CATCCAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 7 0.22
18 10 0.31
19 13 0.41
20 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTCTTTTCTCATT
Found at i:8606715 original size:37 final size:38
Alignment explanation
Indices: 8606647--8606722 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
8606637 CAATTTTGGA
*
8606647 TTTCTTTTTTTATTTTTCATTTTTTCATTTCTCATTTTT
1 TTTCTTTTTTTATTTTT-ATTTTCTCATTTCTCATTTTT
* *
8606686 TTTCTTTTTTTCTTTTT-TTTTCTCTTTTCTCATTTTT
1 TTTCTTTTTTTATTTTTATTTTCTCATTTCTCATTTTT
8606723 CATCCAGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 18 0.53
39 16 0.47
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (38 bp):
TTTCTTTTTTTATTTTTATTTTCTCATTTCTCATTTTT
Found at i:8606721 original size:18 final size:18
Alignment explanation
Indices: 8606674--8606722 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
8606664 CATTTTTTCA
8606674 TTTCTCATTTTTTTTCTT
1 TTTCTCATTTTTTTTCTT
* *
8606692 TTTTTCTTTTTTTTTCTCT
1 TTTCTCATTTTTTTTCT-T
8606711 TTTCTCATTTTT
1 TTTCTCATTTTT
8606723 CATCCAGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTCTCATTTTTTTTCTT
Found at i:8610663 original size:27 final size:27
Alignment explanation
Indices: 8610633--8610724 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
8610623 ATTTTTAAGG
8610633 AAAATTGATACTTTCAACTTTTCCTCA
1 AAAATTGATACTTTCAACTTTTCCTCA
* ** * *
8610660 AAAATAT-TTTTTTTCGAAACTTTATTCTTAA
1 AAAAT-TGATACTTTC--AAC-TT-TTCCTCA
8610691 GGAAAATTGATACTTTCAACTTTTCCTCA
1 --AAAATTGATACTTTCAACTTTTCCTCA
8610720 AAAAT
1 AAAAT
8610725 CTTTTTTTTG
Statistics
Matches: 47, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
27 15 0.32
28 1 0.02
29 8 0.17
30 4 0.09
31 8 0.17
32 1 0.02
33 10 0.21
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.42
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTCCTCA
Found at i:8610702 original size:60 final size:57
Alignment explanation
Indices: 8610574--8610792 Score: 325
Period size: 59 Copynumber: 3.7 Consensus size: 57
8610564 TCTTGTGTAG
8610574 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATA--TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTTTGAAAATTTA-TTTTAA
*
8610631 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAACTTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTT-GAAAATTTATT-TTAA
* *
8610691 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATGTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTT-TAA
8610750 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT
8610793 TTGAAAAATT
Statistics
Matches: 150, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
56 6 0.04
57 28 0.19
58 2 0.01
59 60 0.40
60 54 0.36
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTAA
Found at i:8610759 original size:59 final size:58
Alignment explanation
Indices: 8610574--8610808 Score: 314
Period size: 60 Copynumber: 3.9 Consensus size: 58
8610564 TCTTGTGTAG
* *
8610574 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAA-TATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTCTAA
*
8610631 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAACTTTA-TTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTT-GAAAATTTATTTC-TAA
*
8610691 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATGTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTGAAAATTTATTTCTAA
*
8610750 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGAAAAATTTGATTT
1 GGAAAATTGATACTTTCAACTTTT-CCTCAAAA-A-TTTTTTTTTG-AAAATTT-ATTT
8610809 TTATTTGAAG
Statistics
Matches: 159, Mismatches: 8, Indels: 16
0.87 0.04 0.09
Matches are distributed among these distances:
56 6 0.04
57 26 0.16
59 43 0.27
60 63 0.40
61 10 0.06
62 7 0.04
63 4 0.03
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTCTAA
Found at i:8610783 original size:119 final size:117
Alignment explanation
Indices: 8610574--8610792 Score: 361
Period size: 119 Copynumber: 1.9 Consensus size: 117
8610564 TCTTGTGTAG
* *
8610574 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATGTATTTCTAAGGAAAATT
8610639 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAACTTTATTCTTAA
66 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAACTTTATTCTTAA
*
8610691 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATCTTTTTTTTGAAAATGTATTTCTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAA--TATTTTTTGAAAATGTATTTCTAAGGAAA
8610755 ATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTT
63 ATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT
8610793 TTGAAAAATT
Statistics
Matches: 95, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
116 6 0.06
117 26 0.27
118 1 0.01
119 62 0.65
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATGTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAACTTTATTCTTAA
Found at i:8610962 original size:23 final size:24
Alignment explanation
Indices: 8610922--8610970 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
8610912 AACCTAATAT
*
8610922 AATAAATAAAAAAACAAATAAAAA
1 AATAAATAAAAAAACAAAGAAAAA
**
8610946 AATAAA-AAAAATTCAAAGAAAAA
1 AATAAATAAAAAAACAAAGAAAAA
8610969 AA
1 AA
8610971 AAACCTGGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (24 bp):
AATAAATAAAAAAACAAAGAAAAA
Found at i:8611834 original size:17 final size:17
Alignment explanation
Indices: 8611814--8611852 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8611804 AATTAGGAAG
*
8611814 GATAGGAAAAAAAATCA
1 GATAAGAAAAAAAATCA
* *
8611831 GATAATAAAAAAGATCA
1 GATAAGAAAAAAAATCA
8611848 GATAA
1 GATAA
8611853 AATTAACAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.05, G:0.15, T:0.15
Consensus pattern (17 bp):
GATAAGAAAAAAAATCA
Found at i:8611939 original size:14 final size:14
Alignment explanation
Indices: 8611907--8611936 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8611897 ATTATAAAAA
8611907 AATAATAATAATAT
1 AATAATAATAATAT
8611921 AATAATAATACATAT
1 AATAATAATA-ATAT
8611936 A
1 A
8611937 TAACTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATAATAATAT
Found at i:8611939 original size:25 final size:25
Alignment explanation
Indices: 8611911--8611965 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
8611901 TAAAAAAATA
8611911 ATAATAATAT-AATAATAATACATAT
1 ATAATAATATAAATAA-AATACATAT
*
8611936 ATAACT-ATATAAATAAATTACATAT
1 ATAA-TAATATAAATAAAATACATAT
8611961 A-AATA
1 ATAATA
8611966 TTAACAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
23 1 0.04
24 2 0.08
25 17 0.65
26 6 0.23
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATAATATAAATAAAATACATAT
Found at i:8612144 original size:20 final size:21
Alignment explanation
Indices: 8612119--8612157 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8612109 TTACCCCATT
8612119 TGGGCCAGG-CCCAATTGGTC
1 TGGGCCAGGACCCAATTGGTC
*
8612139 TGGGCCTGGACCCAATTGG
1 TGGGCCAGGACCCAATTGG
8612158 GTGTCTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (21 bp):
TGGGCCAGGACCCAATTGGTC
Found at i:8618682 original size:59 final size:56
Alignment explanation
Indices: 8618549--8618702 Score: 229
Period size: 59 Copynumber: 2.7 Consensus size: 56
8618539 TTGTGTAGGA
* **
8618549 AAAATTGATACTTTCAACTTTTCCCCAAAATA-TTTTTTGGAAATTTATTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTCAAAATTTATTTTAAGG
*
8618604 AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTTCAAAACTTTATTCTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTCAAAA-TTTATT-TTAAGG
8618663 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTT
8618703 TTTGGAAAAT
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
55 23 0.26
56 7 0.08
57 9 0.10
58 7 0.08
59 43 0.48
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTCAAAATTTATTTTAAGG
Found at i:8618753 original size:17 final size:17
Alignment explanation
Indices: 8618728--8618768 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
8618718 TTTTATTTGA
8618728 AAAAAATA-AAAT-AAT
1 AAAAAATATAAATAAAT
8618743 AAAAAATATAAATAAAT
1 AAAAAATATAAATAAAT
8618760 ATAAAAATA
1 A-AAAAATA
8618769 AAGAAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.35
16 4 0.17
17 4 0.17
18 7 0.30
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAAAATATAAATAAAT
Found at i:8618756 original size:21 final size:20
Alignment explanation
Indices: 8618731--8618894 Score: 88
Period size: 21 Copynumber: 7.8 Consensus size: 20
8618721 TATTTGAAAA
8618731 AAATAAAATAATAAAAAATAT
1 AAATAAAATAA-AAAAAATAT
*
8618752 AAATAAATATAAAAATAAAGA-
1 AAATAAA-ATAAAAA-AAATAT
*
8618773 AAAGTAAAACAAAAATAAATAT
1 AAA-TAAAATAAAAA-AAATAT
* *
8618795 AAACTAAGATAAAAAGAATATT
1 AAA-TAAAATAAAAAAAATA-T
* *
8618817 AAATAAACCTAATATAATAA-AT
1 AAATAAA-ATAA-A-AAAAATAT
*
8618839 AAA-AAAATAAAATAAACAAAT
1 AAATAAAATAAAA-AAA-ATAT
*
8618860 AAA-CAAATAAAAAAAAT-T
1 AAATAAAATAAAAAAAATAT
*
8618878 CAAAGAAAA-AAAAAAAA
1 -AAATAAAATAAAAAAAA
8618895 ACCTGGAGCA
Statistics
Matches: 115, Mismatches: 15, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
18 2 0.02
19 15 0.13
20 10 0.09
21 47 0.41
22 35 0.30
23 2 0.02
24 4 0.03
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.18
Consensus pattern (20 bp):
AAATAAAATAAAAAAAATAT
Found at i:8618852 original size:17 final size:17
Alignment explanation
Indices: 8618727--8618875 Score: 67
Period size: 17 Copynumber: 8.3 Consensus size: 17
8618717 TTTTTATTTG
8618727 AAAAAAATAAAAT-AAT
1 AAAAAAATAAAATAAAT
8618743 -AAAAAATATAAATAAAT
1 AAAAAAATA-AAATAAAT
*
8618760 ATAAAAATAAAGA-AAAGT
1 AAAAAAATAAA-ATAAA-T
8618778 AAAACAAAAATAAATATAAACT
1 --AA-AAAAATAAA-ATAAA-T
8618800 AAGATAAAA-AGAATATTAAAT
1 AA-A-AAAATA-AA-A-TAAAT
** *
8618821 AAACCTAATATAATAAAT
1 AAA-AAAATAAAATAAAT
*
8618839 AAAAAAATAAAATAAAC
1 AAAAAAATAAAATAAAT
* *
8618856 AAATAAA-CAAATAAA-
1 AAAAAAATAAAATAAAT
8618871 AAAAA
1 AAAAA
8618876 TTCAAAGAAA
Statistics
Matches: 104, Mismatches: 16, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
15 12 0.12
16 11 0.11
17 24 0.23
18 17 0.16
19 1 0.01
20 9 0.09
21 22 0.21
22 8 0.08
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAAAAATAAAATAAAT
Found at i:8619427 original size:26 final size:24
Alignment explanation
Indices: 8619390--8619446 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
8619380 AATCTGAAAA
8619390 TTTCTCAAAAATTTCCAGAAAAATT
1 TTTCTCAAAAATTTCCA-AAAAATT
* *
8619415 TTTCGTCAAAAATTTCTAAAAATTT
1 TTTC-TCAAAAATTTCCAAAAAATT
8619440 TTTCTCA
1 TTTCTCA
8619447 CTCCCAGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.10
25 14 0.48
26 12 0.41
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.42
Consensus pattern (24 bp):
TTTCTCAAAAATTTCCAAAAAATT
Found at i:8620196 original size:10 final size:9
Alignment explanation
Indices: 8620181--8620243 Score: 63
Period size: 10 Copynumber: 6.4 Consensus size: 9
8620171 TCATTTTTTA
8620181 TTTTTTGTAT
1 TTTTTTGT-T
8620191 TTTTTTGTT
1 TTTTTTGTT
8620200 GTTTTTTGTTGT
1 -TTTTTTG-T-T
8620212 TTTTTTGTT
1 TTTTTTGTT
* *
8620221 TTTATTATT
1 TTTTTTGTT
8620230 ATTTTTTGTT
1 -TTTTTTGTT
8620240 TTTT
1 TTTT
8620244 AACCAAAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
9 13 0.29
10 23 0.51
11 8 0.18
12 1 0.02
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:8620206 original size:20 final size:19
Alignment explanation
Indices: 8620174--8620243 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
8620164 AACATTGTCA
*
8620174 TTTTTTATTTTTTGTATTT
1 TTTTTTGTTTTTTGTATTT
*
8620193 TTTTGTTGTTTTTTGT-TGT
1 TTTT-TTGTTTTTTGTATTT
*
8620212 TTTTTTGTTTTTAT-TATTA
1 TTTTTTGTTTTT-TGTATTT
8620231 TTTTTTGTTTTTT
1 TTTTTTGTTTTTT
8620244 AACCAAAGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
18 10 0.23
19 24 0.55
20 10 0.23
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (19 bp):
TTTTTTGTTTTTTGTATTT
Found at i:8620391 original size:41 final size:39
Alignment explanation
Indices: 8620276--8621331 Score: 1420
Period size: 41 Copynumber: 26.1 Consensus size: 39
8620266 ACTTTGGAAC
8620276 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620316 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGACTTT-GAAAAG
8620358 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620398 TAAATTGCTCCTTTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620437 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGACTTTG-AAAAG
8620479 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620518 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
8620559 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAAG
* *
8620601 TAAATTGCTCTTCTAAACAGAGGCACCATGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
*
8620642 AAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAAG
8620684 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620723 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGACTTT-GAAAAG
*
8620765 TAAATTGCTCCTCTAAATAGAGGCACCACGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
*
8620806 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAGG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
8620846 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAAG
8620888 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8620927 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGACTTTG-AAAAG
8620969 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8621008 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
8621049 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
*
8621090 AAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAAG
8621132 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
*
8621171 TAAATTGCTCCTCTAAACAGAGGCACCAGGACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAG
*
8621212 TAAATTGCTCATCTAAACAGAGGCAACGAAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG--ACTTTGAAAAG
8621253 TAAATTG---CTC----CAGAGGCAACGAAC-TTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAG
8621285 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAAG
8621327 TAAAT
1 TAAAT
8621332 ACTACTAGAC
Statistics
Matches: 934, Mismatches: 30, Indels: 102
0.88 0.03 0.10
Matches are distributed among these distances:
32 15 0.02
33 3 0.00
34 11 0.01
35 3 0.00
38 2 0.00
39 192 0.21
40 142 0.15
41 299 0.32
42 267 0.29
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (39 bp):
TAAATTGCTCCTCTAAACAGAGGCAACGACTTTGAAAAG
Found at i:8620503 original size:81 final size:81
Alignment explanation
Indices: 8620276--8621331 Score: 1547
Period size: 81 Copynumber: 13.1 Consensus size: 81
8620266 ACTTTGGAAC
8620276 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
*
8620339 TACCACG-ACTTTGGAAAAG
65 --CAACGAACTTT-GAAAAG
*
8620358 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTTTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
8620421 CAACGAAC-TTGAAAAG
65 CAACGAACTTTGAAAAG
*
8620437 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGG
8620502 CAACGAAC-TTGAAAAG
65 CAACGAACTTTGAAAAG
*
8620518 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGC
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
8620583 ACCACG-ACTTTGGAAAAG
66 A--ACGAACTTT-GAAAAG
* * *
8620601 TAAATTGCTCTTCTAAACAGAGGCACCATGACTTTGAAAAGAAAATTGCTCCTCTAAACAGAGGC
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
8620666 ACCACG-ACTTTGGAAAAG
66 A--ACGAACTTT-GAAAAG
8620684 TAAATTGCTCCTCTAAACAGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
*
8620746 TACCACG-ACTTTGGAAAAG
65 --CAACGAACTTT-GAAAAG
*
8620765 TAAATTGCTCCTCTAAATAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
*
8620830 AACGAACTTTGAAAGG
66 AACGAACTTTGAAAAG
8620846 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGG
8620911 CAACGAAC-TTGAAAAG
65 CAACGAACTTTGAAAAG
*
8620927 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGG
8620992 CAACGAAC-TTGAAAAG
65 CAACGAACTTTGAAAAG
*
8621008 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGC
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
8621073 ACCACG-ACTTTGAAAAG
66 A--ACGAACTTTGAAAAG
*
8621090 AAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGG
8621155 CAACGAAC-TTGAAAAG
65 CAACGAACTTTGAAAAG
* *
8621171 TAAATTGCTCCTCTAAACAGAGGCACCAGGACTTTGAAAAGTAAATTGCTCATCTAAACAGAGGC
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
8621236 AACGAAACTTTGAAAAG
66 AACG-AACTTTGAAAAG
8621253 TAAATTG---CTC----CAGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
8621308 CACCACG-ACTTTGGAAAAG
65 CA--ACGAACTTT-GAAAAG
8621327 TAAAT
1 TAAAT
8621332 ACTACTAGAC
Statistics
Matches: 917, Mismatches: 29, Indels: 64
0.91 0.03 0.06
Matches are distributed among these distances:
73 39 0.04
74 13 0.01
75 11 0.01
79 33 0.04
80 104 0.11
81 368 0.40
82 175 0.19
83 174 0.19
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (81 bp):
TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGC
AACGAACTTTGAAAAG
Found at i:8620593 original size:122 final size:121
Alignment explanation
Indices: 8620276--8621331 Score: 1543
Period size: 122 Copynumber: 8.7 Consensus size: 121
8620266 ACTTTGGAAC
*
8620276 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTA
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
8620341 CCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
66 CCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
* *
8620398 TAAATTGCTCCTTTAAACAGAGGCAACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGTA
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
8620462 CCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
66 CCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8620518 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
* *
8620582 CACCACGACTTTGGAAAAGTAAATTGCTCTTCTAAACAGAGGC-ACCATGACTTTGAAAAG
64 CACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA--ACTTTGAAAAG
*
8620642 AAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAG
*
8620706 GCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG-ACTTTGGAAAAG
63 GCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG--CAACGAACTTT-GAAAAG
*
8620765 TAAATTGCTCCTCTAAATAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
*
8620829 CA--ACGAACTTTGAAAGGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
64 CACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
*
8620888 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGTA
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
8620952 CCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAG
66 CCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
8621008 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG
*
8621072 CACCACGACTTTGAAAAGAAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
64 CACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
8621132 TAAATTGCTCCTCTAAACAGAGGCAACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
* *
8621196 CCAGGACTTTGAAAAGTAAATTGCTCATCTAAACAGAGGCAACGAAACTTTGAAAAG
66 CCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACG-AACTTTGAAAAG
8621253 TAAATTG---CTC----CAGAGGCAACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
8621310 CCACGACTTTGGAAAAGTAAAT
66 CCACGACTTT-GAAAAGTAAAT
8621332 ACTACTAGAC
Statistics
Matches: 876, Mismatches: 25, Indels: 73
0.90 0.03 0.07
Matches are distributed among these distances:
114 56 0.06
115 11 0.01
118 3 0.00
120 67 0.08
121 169 0.19
122 307 0.35
123 155 0.18
124 76 0.09
125 32 0.04
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (121 bp):
TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
CCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
Done.