Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 39 of 84
Found at i:9176937 original size:30 final size:29
Alignment explanation
Indices: 9176837--9177018 Score: 145
Period size: 30 Copynumber: 6.2 Consensus size: 29
9176827 CTCCAAATAT
* * *
9176837 TAAAATTAAATCC-TAAACCCTCTGAACCC
1 TAAAATCAAAACCTTAAACCCTC-AAACCC
* **
9176866 TAAAAT-TAAACCTTAAACCCTTTGAACCC
1 TAAAATCAAAACCTTAAACCC-TCAAACCC
* *
9176895 TAAAAACGAAACCTTAAACCCTCAAAACCC
1 TAAAATCAAAACCTTAAACCCTC-AAACCC
* * **
9176925 TAAAATCAAAACC-CAAAACCTCAAACTT
1 TAAAATCAAAACCTTAAACCCTCAAACCC
* * * *
9176953 TAAAACCAAAACTCTAAAATCTTCAAACCC
1 TAAAATCAAAAC-CTTAAACCCTCAAACCC
*
9176983 TAAAATCAAAACCCTAAACCCCTCAAACCC
1 TAAAATCAAAACCTTAAA-CCCTCAAACCC
9177013 TAAAAT
1 TAAAAT
9177019 TCAAGCCCTA
Statistics
Matches: 122, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
28 19 0.16
29 37 0.30
30 66 0.54
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.20
Consensus pattern (29 bp):
TAAAATCAAAACCTTAAACCCTCAAACCC
Found at i:9185679 original size:30 final size:30
Alignment explanation
Indices: 9185643--9185700 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
9185633 ATTGTGAAAA
9185643 TTTGCTAGTGAAAAGATGTTGCTAAATTAG
1 TTTGCTAGTGAAAAGATGTTGCTAAATTAG
*
9185673 TTTGCTAGTGAAAAGTTGTTGCTAAATT
1 TTTGCTAGTGAAAAGATGTTGCTAAATT
9185701 GTTATGTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (30 bp):
TTTGCTAGTGAAAAGATGTTGCTAAATTAG
Found at i:9186625 original size:16 final size:15
Alignment explanation
Indices: 9186584--9186640 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 15
9186574 TAAATTCTTG
*
9186584 TTGTAGATGATTTTCT
1 TTGTA-ATGATTTTTT
9186600 TT-TAAT-ATTTTTT
1 TTGTAATGATTTTTT
*
9186613 TTGTATATGATTTTCT
1 TTGTA-ATGATTTTTT
9186629 TT-TAAT-ATTTTT
1 TTGTAATGATTTTT
9186641 CTTAATCTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
13 13 0.37
14 6 0.17
15 6 0.17
16 10 0.29
ACGTcount: A:0.21, C:0.04, G:0.09, T:0.67
Consensus pattern (15 bp):
TTGTAATGATTTTTT
Found at i:9186626 original size:29 final size:29
Alignment explanation
Indices: 9186584--9186640 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
9186574 TAAATTCTTG
9186584 TTGTAGATGATTTTCTTTTAATATTTTTT
1 TTGTAGATGATTTTCTTTTAATATTTTTT
*
9186613 TTGTATATGATTTTCTTTTAATATTTTT
1 TTGTAGATGATTTTCTTTTAATATTTTT
9186641 CTTAATCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.04, G:0.09, T:0.67
Consensus pattern (29 bp):
TTGTAGATGATTTTCTTTTAATATTTTTT
Found at i:9186638 original size:13 final size:13
Alignment explanation
Indices: 9186593--9186639 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
9186583 GTTGTAGATG
9186593 ATTTTCTTTTAAT
1 ATTTTCTTTTAAT
*
9186606 ATTTTTTTTGTATAT
1 ATTTTCTTT-TA-AT
9186621 GATTTTCTTTTAAT
1 -ATTTTCTTTTAAT
9186635 ATTTT
1 ATTTT
9186640 TCTTAATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 13 0.45
14 4 0.14
15 4 0.14
16 8 0.28
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (13 bp):
ATTTTCTTTTAAT
Found at i:9186640 original size:14 final size:14
Alignment explanation
Indices: 9186594--9186643 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
9186584 TTGTAGATGA
9186594 TTTTCTTTTAATAT
1 TTTTCTTTTAATAT
9186608 TTTT-TTTGT-ATAT
1 TTTTCTTT-TAATAT
9186621 GATTTTCTTTTAATAT
1 --TTTTCTTTTAATAT
9186637 TTTTCTT
1 TTTTCTT
9186644 AATCTTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
13 7 0.23
14 12 0.39
15 5 0.16
16 7 0.23
ACGTcount: A:0.18, C:0.06, G:0.04, T:0.72
Consensus pattern (14 bp):
TTTTCTTTTAATAT
Found at i:9187324 original size:2 final size:2
Alignment explanation
Indices: 9187317--9187355 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
9187307 CTATTAACAT
*
9187317 TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9187356 GATTCTTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:9201306 original size:21 final size:21
Alignment explanation
Indices: 9201280--9201321 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9201270 AATATGAAAA
9201280 ATTACAAAGGAGAAGAACTAT
1 ATTACAAAGGAGAAGAACTAT
9201301 ATTACAAAGGAGAAGAACTAT
1 ATTACAAAGGAGAAGAACTAT
9201322 CTTTTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (21 bp):
ATTACAAAGGAGAAGAACTAT
Found at i:9205702 original size:62 final size:63
Alignment explanation
Indices: 9205630--9205770 Score: 207
Period size: 62 Copynumber: 2.3 Consensus size: 63
9205620 TTAAGTAATG
9205630 AAAGTGATTATTTAAGATATTTTAAGTCAAAAATACCTTAAATAATATCC-TTCAAAAAATTG-A
1 AAAGT-ATTATTTAAGATATTTTAAGTCAAAAATACCTTAAATAATA-CCTTTCAAAAAATTGAA
* ** *
9205693 AAAGTATTATTTAAGGTATTTTTTGTCAAAAATACTTTAAATAATACCTTTCAAAAAATTGAA
1 AAAGTATTATTTAAGATATTTTAAGTCAAAAATACCTTAAATAATACCTTTCAAAAAATTGAA
9205756 AAAG-ATTATTTAAGA
1 AAAGTATTATTTAAGA
9205771 CGTTTCTAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
61 2 0.03
62 59 0.83
63 10 0.14
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.37
Consensus pattern (63 bp):
AAAGTATTATTTAAGATATTTTAAGTCAAAAATACCTTAAATAATACCTTTCAAAAAATTGAA
Found at i:9205786 original size:62 final size:60
Alignment explanation
Indices: 9205635--9205805 Score: 175
Period size: 62 Copynumber: 2.8 Consensus size: 60
9205625 TAATGAAAGT
*
9205635 GATTATTTAAGATATTTTAAGTCAAAAATACCTTAAATAATATCCTTCAAAAAATTGAAAA
1 GATTATTTAAGA-GTTTTAAGTCAAAAATACCTTAAATAATATCCTTCAAAAAATTGAAAA
** *
9205696 GTATTATTTAAG-GTATTTTTTGTCAAAAATACTTTAAATAATA-CCTTTCAAAAAATTGAAAAA
1 G-ATTATTTAAGAG--TTTTAAGTCAAAAATACCTTAAATAATATCC-TTCAAAAAATTG-AAAA
* * ** *
9205759 GATTATTTAAGACGTTTCTAAATAAAAAATGTCTTAAATAATCTCCT
1 GATTATTTAAGA-GTTT-TAAGTCAAAAATACCTTAAATAATATCCT
9205806 AATATATTTT
Statistics
Matches: 89, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
61 3 0.03
62 60 0.67
63 23 0.26
64 3 0.03
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (60 bp):
GATTATTTAAGAGTTTTAAGTCAAAAATACCTTAAATAATATCCTTCAAAAAATTGAAAA
Found at i:9206826 original size:2 final size:2
Alignment explanation
Indices: 9206821--9206850 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9206811 ATATATATAT
9206821 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
9206851 TTTTTCCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9209492 original size:13 final size:13
Alignment explanation
Indices: 9209450--9209501 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
9209440 ATAAATTTGG
9209450 TAATAT-AAAATA
1 TAATATAAAAATA
*
9209462 TAATATAATAATA
1 TAATATAAAAATA
9209475 T--TATAAAAATA
1 TAATATAAAAATA
*
9209486 TAATATAAAAAAA
1 TAATATAAAAATA
9209499 TAA
1 TAA
9209502 AAGTGATAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 10 0.29
12 6 0.18
13 18 0.53
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAATATAAAAATA
Found at i:9209640 original size:18 final size:19
Alignment explanation
Indices: 9209603--9209646 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
9209593 ACACATAATT
9209603 TTATATAAAATATTATATAA
1 TTATAT-AAATATTATATAA
*
9209623 TTATATAAATTTTA-ATAA
1 TTATATAAATATTATATAA
9209641 TT-TATA
1 TTATATA
9209647 CCATATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 6 0.26
19 7 0.30
20 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATATAAATATTATATAA
Found at i:9211312 original size:2 final size:2
Alignment explanation
Indices: 9211305--9211346 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
9211295 CCCCCAAACC
9211305 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9211347 TGTTCTCATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:9212654 original size:27 final size:27
Alignment explanation
Indices: 9212617--9212673 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
9212607 TGATGTGATG
9212617 TTATCACTATACTTTAAA-TTAAAAATA
1 TTATCACTATA-TTTAAATTTAAAAATA
* *
9212644 TTATCATTATATTTAAATTTTAAAATA
1 TTATCACTATATTTAAATTTAAAAATA
9212671 TTA
1 TTA
9212674 AAAATATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (27 bp):
TTATCACTATATTTAAATTTAAAAATA
Found at i:9223715 original size:13 final size:13
Alignment explanation
Indices: 9223682--9223715 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9223672 TAAATTTCTT
9223682 AATTAATTATTAA
1 AATTAATTATTAA
* *
9223695 TATAAATTATTAA
1 AATTAATTATTAA
9223708 AATTAATT
1 AATTAATT
9223716 TAAGCTAATA
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTATTAA
Found at i:9228325 original size:17 final size:17
Alignment explanation
Indices: 9228254--9228330 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
9228244 TAAATATATA
*
9228254 AAAATTAATTTTTTTAA-
1 AAAATT-ATTTTATTAAT
9228271 AAAATTA-TTTATTAAT
1 AAAATTATTTTATTAAT
* * *
9228287 GAAATGATATTATT--T
1 AAAATTATTTTATTAAT
*
9228302 -AATTTATTTTATTAAT
1 AAAATTATTTTATTAAT
*
9228318 AAAATTATATTAT
1 AAAATTATTTTAT
9228331 ATTATTAATT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
14 10 0.22
15 8 0.17
16 7 0.15
17 21 0.46
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
AAAATTATTTTATTAAT
Found at i:9228347 original size:18 final size:17
Alignment explanation
Indices: 9228274--9228350 Score: 59
Period size: 18 Copynumber: 4.4 Consensus size: 17
9228264 TTTTTAAAAA
* *
9228274 ATTAT-TTATTAATGAA
1 ATTATATTATTAATTAT
*
9228290 ATGATATTATTTAATT-T
1 ATTATATTA-TTAATTAT
* *
9228307 ATTTTATTAATAAAATTAT
1 ATTATATT-AT-TAATTAT
9228326 ATTATATTATTAATTGAT
1 ATTATATTATTAATT-AT
9228344 ATTATAT
1 ATTATAT
9228351 AAAATTTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
16 4 0.09
17 14 0.30
18 21 0.45
19 8 0.17
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (17 bp):
ATTATATTATTAATTAT
Found at i:9229990 original size:33 final size:33
Alignment explanation
Indices: 9229939--9230037 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
9229929 AAAAAGTAGG
* *
9229939 CAAATTTCCTATAACTAATTTCCCCTGAACTTC
1 CAAATTTCCAATACCTAATTTCCCCTGAACTTC
* * ** *
9229972 CAAATTTCCAATTCCTAATTTCTCCAAAACTTT
1 CAAATTTCCAATACCTAATTTCCCCTGAACTTC
* *
9230005 CAAATTTCCAATCCCTACTTTCCCCTGAACTTC
1 CAAATTTCCAATACCTAATTTCCCCTGAACTTC
9230038 GATTTCCTTG
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.29, C:0.32, G:0.02, T:0.36
Consensus pattern (33 bp):
CAAATTTCCAATACCTAATTTCCCCTGAACTTC
Found at i:9231860 original size:34 final size:35
Alignment explanation
Indices: 9231794--9231861 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
9231784 CAATTGTAAC
*
9231794 GGTTCAATGGTATTCAACACAAGGGCAGAGAAAAA
1 GGTTCAATGGCATTCAACACAAGGGCAGAGAAAAA
*
9231829 GGTTTAATGGCATTCAACACAA-GGCAGAGAAAA
1 GGTTCAATGGCATTCAACACAAGGGCAGAGAAAA
9231862 GGGGTGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 11 0.35
35 20 0.65
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.18
Consensus pattern (35 bp):
GGTTCAATGGCATTCAACACAAGGGCAGAGAAAAA
Found at i:9252883 original size:12 final size:12
Alignment explanation
Indices: 9252868--9252892 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9252858 TGAGATACCT
9252868 TATGTTCTAGGG
1 TATGTTCTAGGG
9252880 TATGTTCTAGGG
1 TATGTTCTAGGG
9252892 T
1 T
9252893 CATCGAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.32, T:0.44
Consensus pattern (12 bp):
TATGTTCTAGGG
Found at i:9258136 original size:16 final size:17
Alignment explanation
Indices: 9258115--9258156 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
9258105 TTACGAAGTG
9258115 AATAATA-TTTTTAAAA
1 AATAATAGTTTTTAAAA
9258131 AATAATTATGTTTTTAAAA
1 AATAA-TA-GTTTTTAAAA
*
9258150 TATAATA
1 AATAATA
9258157 AAATCTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.23
17 2 0.09
18 2 0.09
19 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
AATAATAGTTTTTAAAA
Found at i:9258277 original size:18 final size:18
Alignment explanation
Indices: 9258256--9258307 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
9258246 AATAATTTTG
*
9258256 ATTATGATATTTTATATA
1 ATTATAATATTTTATATA
9258274 ATTATAATA-TTTATA-A
1 ATTATAATATTTTATATA
*
9258290 ATAATAATATATTTATAT
1 ATTATAATAT-TTTATAT
9258308 TCAAATAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 9 0.31
17 6 0.21
18 14 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTATAATATTTTATATA
Found at i:9258298 original size:16 final size:17
Alignment explanation
Indices: 9258266--9258299 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9258256 ATTATGATAT
*
9258266 TTTATATAATTATAATA
1 TTTATATAATAATAATA
9258283 TTTATA-AATAATAATA
1 TTTATATAATAATAATA
9258299 T
1 T
9258300 ATTTATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTATATAATAATAATA
Found at i:9261618 original size:13 final size:13
Alignment explanation
Indices: 9261597--9261621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9261587 TTAATTTTTA
9261597 ATTTTAATATATT
1 ATTTTAATATATT
9261610 ATTTTAATATAT
1 ATTTTAATATAT
9261622 AAAATATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTTAATATATT
Found at i:9269729 original size:12 final size:12
Alignment explanation
Indices: 9269698--9269736 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
9269688 ATAAGTTTTT
*
9269698 TAAATTTTTATA
1 TAAATTTTAATA
*
9269710 TATTATTTTAATA
1 TA-AATTTTAATA
9269723 TAAATTTTAATA
1 TAAATTTTAATA
9269735 TA
1 TA
9269737 TTTAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TAAATTTTAATA
Found at i:9269756 original size:20 final size:21
Alignment explanation
Indices: 9269698--9269749 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 21
9269688 ATAAGTTTTT
9269698 TAAATTTTTATATATTATTTTAATA
1 TAAA-TTTTA-ATA-TA-TTTAATA
9269723 TAAATTTTAATATATTTAA-A
1 TAAATTTTAATATATTTAATA
9269743 TAAATTT
1 TAAATTT
9269750 AGATATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 8 0.30
21 5 0.19
22 2 0.07
23 3 0.11
24 5 0.19
25 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAAATTTTAATATATTTAATA
Found at i:9272855 original size:22 final size:22
Alignment explanation
Indices: 9272814--9272855 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9272804 ATATTAAATT
* **
9272814 AAAAATTAAAAAAAGTAAATAA
1 AAAAAATAAAAAAAACAAATAA
9272836 AAAAAATAAAAAAAACAAAT
1 AAAAAATAAAAAAAACAAAT
9272856 GACTGGAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAAAATAAAAAAAACAAATAA
Found at i:9274265 original size:2 final size:2
Alignment explanation
Indices: 9274260--9274291 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9274250 AAAGGCTAGA
*
9274260 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9274292 GCGTGTGCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9274668 original size:24 final size:24
Alignment explanation
Indices: 9274641--9274717 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
9274631 ATCATTTTAT
9274641 TATTGACATAAGCTTAGATGAATG
1 TATTGACATAAGCTTAGATGAATG
* * * * **
9274665 TATTTG-TAGAAGCATATCATTTTAT-
1 TA-TTGACATAAGCTTA-GA-TGAATG
9274690 TATTGACATAAGCTTAGATGAATG
1 TATTGACATAAGCTTAGATGAATG
9274714 TATT
1 TATT
9274718 TGTAGAAGCA
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
23 3 0.08
24 17 0.47
25 13 0.36
26 3 0.08
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (24 bp):
TATTGACATAAGCTTAGATGAATG
Found at i:9274696 original size:49 final size:49
Alignment explanation
Indices: 9274624--9274739 Score: 216
Period size: 49 Copynumber: 2.4 Consensus size: 49
9274614 TATATAAGAT
9274624 GAAGCATATCATTTTATTATTGACATAAGCTTAGATGAATGTATTTGTA
1 GAAGCATATCATTTTATTATTGACATAAGCTTAGATGAATGTATTTGTA
9274673 GAAGCATATCATTTTATTATTGACATAAGCTTAGATGAATGTATTTGTA
1 GAAGCATATCATTTTATTATTGACATAAGCTTAGATGAATGTATTTGTA
*
9274722 GAAGCATATC-TTTAATTA
1 GAAGCATATCATTTTATTA
9274740 AAATGAATGT
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
48 7 0.11
49 59 0.89
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.41
Consensus pattern (49 bp):
GAAGCATATCATTTTATTATTGACATAAGCTTAGATGAATGTATTTGTA
Found at i:9274702 original size:25 final size:25
Alignment explanation
Indices: 9274625--9274702 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
9274615 ATATAAGATG
9274625 AAGCATATCATTTTATTATTGACAT
1 AAGCATATCATTTTATTATTGACAT
* * ** * *
9274650 AAGCTTA-GA-TGAATGTATTTG-TAG
1 AAGCATATCATTTTAT-TA-TTGACAT
9274674 AAGCATATCATTTTATTATTGACAT
1 AAGCATATCATTTTATTATTGACAT
9274699 AAGC
1 AAGC
9274703 TTAGATGAAT
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
23 3 0.08
24 13 0.36
25 17 0.47
26 3 0.08
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (25 bp):
AAGCATATCATTTTATTATTGACAT
Found at i:9274726 original size:24 final size:24
Alignment explanation
Indices: 9274650--9274726 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
9274640 TTATTGACAT
9274650 AAGCTTAGATGAATGTATTTGTAG
1 AAGCTTAGATGAATGTATTTGTAG
* * * * * *
9274674 AAGC--ATATCATTTTATTATTGACAT
1 AAGCTTAGATGAATGTA-T-TTG-TAG
9274699 AAGCTTAGATGAATGTATTTGTAG
1 AAGCTTAGATGAATGTATTTGTAG
9274723 AAGC
1 AAGC
9274727 ATATCTTTAA
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 7 0.19
23 1 0.03
24 12 0.33
25 8 0.22
26 1 0.03
27 7 0.19
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (24 bp):
AAGCTTAGATGAATGTATTTGTAG
Found at i:9285665 original size:24 final size:24
Alignment explanation
Indices: 9285645--9285738 Score: 98
Period size: 24 Copynumber: 3.9 Consensus size: 24
9285635 AGATGGTGTA
*
9285645 TTGGTTGGTGGGTGAACTGGTGGC
1 TTGGGTGGTGGGTGAACTGGTGGC
* * ** *
9285669 TTGGGTGGAGCGTGAGTTGGCGGC
1 TTGGGTGGTGGGTGAACTGGTGGC
* *
9285693 TTGGTTGGTAGGTGAACTGGTGGC
1 TTGGGTGGTGGGTGAACTGGTGGC
* *
9285717 TTGGGTGGTGGATAAACTGGTG
1 TTGGGTGGTGGGTGAACTGGTG
9285739 CAGGAGTAGG
Statistics
Matches: 53, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.12, C:0.09, G:0.49, T:0.31
Consensus pattern (24 bp):
TTGGGTGGTGGGTGAACTGGTGGC
Found at i:9285825 original size:6 final size:6
Alignment explanation
Indices: 9285810--9285862 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
9285800 GGAGGTTGGC
* * * * *
9285810 GGGTGA GGGTGG GGGTGG GGATGG GGGTGA GGGTGG TGGTGG TGGTGG
1 GGGTGG GGGTGG GGGTGG GGGTGG GGGTGG GGGTGG GGGTGG GGGTGG
*
9285858 TGGTG
1 GGGTG
9285863 TTGGCTTGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.06, C:0.00, G:0.72, T:0.23
Consensus pattern (6 bp):
GGGTGG
Found at i:9293785 original size:18 final size:18
Alignment explanation
Indices: 9293762--9293796 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9293752 GAGGAAGGGT
*
9293762 GGTGGTGGTGGTGGTTGG
1 GGTGGTGGCGGTGGTTGG
9293780 GGTGGTGGCGGTGGTTG
1 GGTGGTGGCGGTGGTTG
9293797 AATCTGGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.03, G:0.66, T:0.31
Consensus pattern (18 bp):
GGTGGTGGCGGTGGTTGG
Found at i:9294623 original size:101 final size:102
Alignment explanation
Indices: 9294413--9294625 Score: 392
Period size: 101 Copynumber: 2.1 Consensus size: 102
9294403 ATTATTTAAG
9294413 TTGAATAAATATAATTCATATTATTTTACGATTTATCATACTAATACATTAATTTTTTTAAATAT
1 TTGAATAAATATAATTCATATTATTTTACGATTTATCATACTAATACATTAATTTTTTTAAATAT
* *
9294478 CACTTTATATAATATTTGTTAATAATCCATTGATCAT
66 CACTTTATATAATATTTGTTAATAATCCATCGATAAT
9294515 TTGAATAAATATAATTCATATTATTTTACGATTTATCATACTAATACA-TAATTTTTTTAAATAT
1 TTGAATAAATATAATTCATATTATTTTACGATTTATCATACTAATACATTAATTTTTTTAAATAT
*
9294579 CACTTTATATTATATTTGTTAATAATCCATCGATAAT
66 CACTTTATATAATATTTGTTAATAATCCATCGATAAT
9294616 TTGAATAAAT
1 TTGAATAAAT
9294626 TCAATAAGAT
Statistics
Matches: 108, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 60 0.56
102 48 0.44
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.47
Consensus pattern (102 bp):
TTGAATAAATATAATTCATATTATTTTACGATTTATCATACTAATACATTAATTTTTTTAAATAT
CACTTTATATAATATTTGTTAATAATCCATCGATAAT
Found at i:9295541 original size:2 final size:2
Alignment explanation
Indices: 9295534--9295567 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9295524 GGACCTTTTC
9295534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9295568 TATTCTAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9296824 original size:2 final size:2
Alignment explanation
Indices: 9296817--9296858 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
9296807 AACACGGTTT
9296817 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9296859 GTATGTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9298196 original size:2 final size:2
Alignment explanation
Indices: 9298191--9298223 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9298181 AAGTGTGAAA
9298191 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9298224 TAAACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9304058 original size:35 final size:35
Alignment explanation
Indices: 9303994--9304060 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
9303984 ATATGTCAAA
* *
9303994 TCAGTTGTAAGTTTATGTCCAAAAGATATTTGCTG
1 TCAGTTGTAAGTTAATGCCCAAAAGATATTTGCTG
9304029 TCAGTTGTATA-TTAATGCCCACAAA-ATATTTG
1 TCAGTTGTA-AGTTAATGCCCA-AAAGATATTTG
9304061 GTTTTTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
35 24 0.86
36 4 0.14
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (35 bp):
TCAGTTGTAAGTTAATGCCCAAAAGATATTTGCTG
Found at i:9307400 original size:80 final size:80
Alignment explanation
Indices: 9307297--9307540 Score: 292
Period size: 80 Copynumber: 3.0 Consensus size: 80
9307287 ACCATTCAGT
* * * * * *
9307297 AAACCATTTAGAATATGATTCAGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATCAG
1 AAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATATCATTCAGCAAAAAAATATCAA
9307362 ACAACAAGGTTCAAC
66 ACAACAAGGTTCAAC
* * * * *
9307377 AAACCATTCGGCATATGATTCAGCCCCCCAATATCATACAATATCATTCGGTAATACAATAT-AA
1 AAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATATCATTCAGCAAAAAAATATCAA
* *
9307441 TACAACAAGATTCAAT
66 -ACAACAAGGTTCAAC
* * * * * *
9307457 AAACCATTTAGCATACGATTCAGCCTCCTAATATCAAACAATATCATTCAACAAAAAAATATCAA
1 AAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATATCATTCAGCAAAAAAATATCAA
*
9307522 ACAACAAAGTTCAAC
66 ACAACAAGGTTCAAC
9307537 AAAC
1 AAAC
9307541 AATATTTAAG
Statistics
Matches: 136, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 133 0.98
81 2 0.01
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.23
Consensus pattern (80 bp):
AAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATATCATTCAGCAAAAAAATATCAA
ACAACAAGGTTCAAC
Found at i:9307534 original size:28 final size:28
Alignment explanation
Indices: 9307486--9307539 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
9307476 TCAGCCTCCT
* *
9307486 AATATCAAACAATATCATTCAACAAAAA
1 AATATCAAACAACATAATTCAACAAAAA
9307514 AATATCAAACAACA-AAGTTCAACAAA
1 AATATCAAACAACATAA-TTCAACAAA
9307540 CAATATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.61, C:0.19, G:0.02, T:0.19
Consensus pattern (28 bp):
AATATCAAACAACATAATTCAACAAAAA
Found at i:9309682 original size:698 final size:699
Alignment explanation
Indices: 9308288--9310649 Score: 3462
Period size: 702 Copynumber: 3.4 Consensus size: 699
9308278 TTTTATTGTA
* * * * *
9308288 GAAGATGCCTTTAATAATCCCAATAAATTCT--AAG-AAATTATTAAAGGCGTTTATAACCAAGA
1 GAAGATGCCTTTACTAATCCAAACAAATTCTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
* * * * *
9308350 AACACCTTCAAA-TTTTATGAAGAATTTTTAAAAAGATTTATTGAAGGCATTTGTCAGTAGAAGA
66 AACGCCTTCAAATTTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTCAGTAGAAGA
* * *
9308414 CG-TCGTTAATAATTTTAAAATATTTTTTAGAGAAAAATCATTGAAGGTGTATGTTATTAACAAA
131 CGCT-GTTAATAA-TTCAAAATATTTTTTAGAGAAAAATTATTGAAGGTGTGTGTTATTAACAAA
* *
9308478 TGCCTTTTGTAATTAAGTACTAAGTTTAAATAAATTAGTAAAGGCATTTTTCTGGAATAAATGCC
194 CGCCTTTTGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATGCC
**
9308543 TTCAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGACGTTTTT
259 TTCAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGACACTTTT
* * *
9308608 AGTACGACCAAAATTTCTTAGAGGAAAATCATTGAAGGTGGTGTTTTGGAAT-AACGCCTTCACT
324 AGTACTACCAAAATTTCTTAGAGGGAAATCATTGAAGGTGGTGTTATGGAATAAACGCCTTCACT
*
9308672 AACC-TTTACAAATTTTAAGTTCTCAATTATTAAAGGA-GTTTTTCGCTAGAAGATGCCATTACT
389 AACCGTTTACAAATTTTAAGTTCTCAATTATTAAA-GACATTTTTCGCTAGAAGATGCCATTACT
* **
9308735 AATACCAATAATTTTAATTAAAAATTGTTCAATGCGTTTGTAATTAAAATAAAATAAAAGCTTCT
453 AATAACAATAATTTTAATTAAAAATTGTTCAATATGTTTGTAATTAAAATAAAATAAAAGCTTCT
* *
9308800 AGTAATGGTATTTTTCTACAATAAATGCCTTCACTATTTTAAGCAGTGGAATATTGAAGGCATTT
518 AGTAATGGTATTTTTCTACAATAAATGCCTTCACTATTTTGAGCAGTGGAATATTAAAGGCATTT
* * ** * *
9308865 TGCAGTAGAAGACGCCTTCAATAAATTGATTCCAAAATTTTTTTATAAATTAGTCAAAACATTTT
583 TGCAATAGAAGACGCCTTCAATAAATTGATTCCAAAATTTTTCTACGAATTAATCAAAGCATTTT
* * * *
9308930 TCTGGAATAAAAGCCTTCAATAGAAGGACATTATCGAAGGCGTTTAACAGTC
648 TCTGGAATAAAAGCTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
* * * * *
9308982 GAAGATGCCTTTA-TAAATCCCAATAAATTCTATAAGAAAATTATTGAAGGCATTTATAATCAAC
1 GAAGATGCCTTTACT-AATCCAAACAAATTCTACAAGAAAATTATTGAAGGCGTTTATAATCAAG
*
9309046 AAACGCCTTC-AA-TTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTTAGTAGAAG
65 AAACGCCTTCAAATTTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTCAGTAGAAG
* * * *
9309109 ATGCTGTTAATAAATTCAAAAAAATTTTTAGAGAAAAATTATTAAAGGTGTGTGTTATTAACAAA
130 ACGCTGTTAAT-AATTCAAAATATTTTTTAGAGAAAAATTATTGAAGGTGTGTGTTATTAACAAA
* * *
9309174 CG-CTTTCTGTAATTAAGTACTAAGTTTAAATGAATTATTAAAAGCATTTTTCTAGAATAAATGC
194 CGCCTTT-TGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATGC
* *
9309238 CTTTAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGATACTTT
258 CTTCAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGACACTTT
* *
9309303 TAGTACTACCAAAATTTCTTAGAGGGAAATCATTGAAGGTAGTGTTATGGAATAAACGCATTCAC
323 TAGTACTACCAAAATTTCTTAGAGGGAAATCATTGAAGGTGGTGTTATGGAATAAACGCCTTCAC
* * * *
9309368 TAACCGTTTACAAATTTTAAGTTCTCGATTATTGAAGACATTTTTCACTAGAAGACGCCATTACT
388 TAACCGTTTACAAATTTTAAGTTCTCAATTATTAAAGACATTTTTCGCTAGAAGATGCCATTACT
*
9309433 AATAACAATAATTTTAATTAAAAATTGTTCAATATGTTTGTAATTAAAATAAAAAAAAAGCTTCT
453 AATAACAATAATTTTAATTAAAAATTGTTCAATATGTTTGTAATTAAAATAAAATAAAAGCTTCT
* * * *
9309498 AGTAATGGCATTTTTCTATAATAAATGCCTTCTCTATTTTGAGCAGTGGAATATTAAAGGCGTTT
518 AGTAATGGTATTTTTCTACAATAAATGCCTTCACTATTTTGAGCAGTGGAATATTAAAGGCATTT
*
9309563 TGCAATAGAAGACGCCTTCAATAAATTGATGCCAAAATTTTTCTACGAATTAATCAAAGCATTTT
583 TGCAATAGAAGACGCCTTCAATAAATTGATTCCAAAATTTTTCTACGAATTAATCAAAGCATTTT
*
9309628 TTTGGAATAAAAGCTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
648 TCTGGAATAAAAGCTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
* *
9309680 GAAGAGGCCTTTACTAATCCAAACAAATTTTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
1 GAAGATGCCTTTACTAATCCAAACAAATTCTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
* * * *
9309745 AATGCCTTCATAAATTTTTATGAAAATTTTTTAAAAGGAATTATTAAAGGCGTTTGTTAGTAGAA
66 AACGCCTTC--AAATTTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTCAGTAGAA
** ** **
9309810 GACGCCATTAATAATTCCAAAATATTTTTTAGAGTGAAATTATTGAAGGCATGTGTTATTAACAA
129 GACGCTGTTAATAATT-CAAAATATTTTTTAGAGAAAAATTATTGAAGGTGTGTGTTATTAAC-A
*
9309875 AACACCTTTTGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATG
192 AACGCCTTTTGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATG
* * *
9309940 CCTTCAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCTTTTGTTAGTCGAAGACACTT
257 CCTTCAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGACACTT
* * *
9310005 TTAGTACTACTAAAATTTCGTAGAGGGAAATCAGTGAAGGTGGTGTTATGGAATAAACGCCTTCA
322 TTAGTACTACCAAAATTTCTTAGAGGGAAATCATTGAAGGTGGTGTTATGGAATAAACGCCTTCA
* * *
9310070 CTAACTG-TTACAAATTTTAAGTTCTCAATTATTAAAGGCATTTTTTGCTAGAAGATGCCATTAC
387 CTAACCGTTTACAAATTTTAAGTTCTCAATTATTAAAGACATTTTTCGCTAGAAGATGCCATTAC
* **
9310134 TAATAAAAATAATTTTAATTGGAAATTGTTCAATATGTTTGTAATTAAAATAAAATAAAAGCTTC
452 TAATAACAATAATTTTAATTAAAAATTGTTCAATATGTTTGTAATTAAAATAAAATAAAAGCTTC
* * *
9310199 TAGTAATGGTATTTTTCTACAATAAACGCCATCACTATTTTGAGCAGTGGAATATTAAAGGTATT
517 TAGTAATGGTATTTTTCTACAATAAATGCCTTCACTATTTTGAGCAGTGGAATATTAAAGGCATT
* * *
9310264 TTGCAATAGAAAACGCCTTTAATAAATTGATTCCAAAATTTTTCTACGAATTAATCAATGCATTT
582 TTGCAATAGAAGACGCCTTCAATAAATTGATTCCAAAATTTTTCTACGAATTAATCAAAGCATTT
* * *
9310329 TCCTGAAATAAAAACTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
647 TTCTGGAATAAAAGCTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
** *
9310382 GAAGACACCTTTACTAATCCAAACAAATTTTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
1 GAAGATGCCTTTACTAATCCAAACAAATTCTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
* ** * *
9310447 AACGCCTTC-AATTTTTATAAAGATAATTTAAAAGAAATTATTGAAAGCGTTTGTCAGTAGAAGA
66 AACGCCTTCAAATTTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTCAGTAGAAGA
** *
9310511 TTC-CT-TTAATAATTCTAAAATATTTTTTAGAGTGAAATTATTGAAGGAGTGTGTTATTAACAA
131 --CGCTGTTAATAATTC-AAAATATTTTTTAGAGAAAAATTATTGAAGGTGTGTGTTATTAACAA
* * * *
9310574 ACGCCTTTAGTAATTAAGTAC-AAGTTTAAATGAATTAGTAAATGCATTTTTTTGGAATAAAAGC
193 ACGCCTTTTGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATGC
*
9310638 CTTCTATATTTA
258 CTTCAATATTTA
9310650 CAGTGTTTTT
Statistics
Matches: 1509, Mismatches: 138, Indels: 39
0.90 0.08 0.02
Matches are distributed among these distances:
693 1 0.00
694 29 0.02
695 4 0.00
696 268 0.18
697 103 0.07
698 362 0.24
699 100 0.07
700 1 0.00
701 7 0.00
702 447 0.30
703 183 0.12
704 4 0.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (699 bp):
GAAGATGCCTTTACTAATCCAAACAAATTCTACAAGAAAATTATTGAAGGCGTTTATAATCAAGA
AACGCCTTCAAATTTTTATGAAGATTTTTTAAAAGGAATTATTGAAGGCGTTTGTCAGTAGAAGA
CGCTGTTAATAATTCAAAATATTTTTTAGAGAAAAATTATTGAAGGTGTGTGTTATTAACAAACG
CCTTTTGTAATTAAGTACTAAGTTTAAATGAATTAGTAAAGGCATTTTTCTGGAATAAATGCCTT
CAATATTTATGTAGATAATTTAAATGAAATTATTGAAGGCCTTTGTCAGTAGAAGACACTTTTAG
TACTACCAAAATTTCTTAGAGGGAAATCATTGAAGGTGGTGTTATGGAATAAACGCCTTCACTAA
CCGTTTACAAATTTTAAGTTCTCAATTATTAAAGACATTTTTCGCTAGAAGATGCCATTACTAAT
AACAATAATTTTAATTAAAAATTGTTCAATATGTTTGTAATTAAAATAAAATAAAAGCTTCTAGT
AATGGTATTTTTCTACAATAAATGCCTTCACTATTTTGAGCAGTGGAATATTAAAGGCATTTTGC
AATAGAAGACGCCTTCAATAAATTGATTCCAAAATTTTTCTACGAATTAATCAAAGCATTTTTCT
GGAATAAAAGCTTTCAATAGAATGACATTATTGAAGGCGTTTAATAGTC
Found at i:9317097 original size:140 final size:139
Alignment explanation
Indices: 9316851--9317106 Score: 295
Period size: 140 Copynumber: 1.8 Consensus size: 139
9316841 ATTAACAGTT
* * * * *
9316851 ATTGTTTTGTTTTAATAGTTTTGATAGTTTCAATACATGATATTAAACTTATCTAAAGTTTTGAA
1 ATTGTTGTATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCTAAAGTTTTGAA
* * * *
9316916 CTTATTTGACACGGATGATATATATGAAAAAGTTATTGTTTACGTGTATTTAGGTAAAAATAAAA
66 CTTATTT-ACACAGATGATATAGATGAAAAAGTTATCGTTTACGTCTATTTAGGTAAAAATAAAA
9316981 ATTTGTTGTA
130 ATTTGTTGTA
* *
9316991 ATTGTTGTATTTTAACAGTTTAGATAGCTTCAATACTTGATATTAAACTTATCT-GA-TTGATTG
1 ATTGTTGTATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCTAAAGTT--TTG
* * * *
9317054 AACTTAGTTT-CTACAGTTGATATGGGA-GAAAAAGTTGTCGTTTATGTCTATTT
64 AACTTA-TTTAC-ACAGATGATAT-AGATGAAAAAGTTATCGTTTACGTCTATTT
9317107 GAGACTATTT
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
138 2 0.02
139 2 0.02
140 88 0.92
141 4 0.04
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.44
Consensus pattern (139 bp):
ATTGTTGTATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCTAAAGTTTTGAA
CTTATTTACACAGATGATATAGATGAAAAAGTTATCGTTTACGTCTATTTAGGTAAAAATAAAAA
TTTGTTGTA
Found at i:9318775 original size:134 final size:134
Alignment explanation
Indices: 9318608--9318952 Score: 408
Period size: 134 Copynumber: 2.6 Consensus size: 134
9318598 AGTGTATGAA
* * * * * *
9318608 AGATACAAACACCTCTAAAGTAGCGGCAATTTCAGTTACAAACACTACCAAAACAACAACGTTTT
1 AGATACAAACACCTTTAAAGTAACGGCAGTTTCAGTTACAAACGCCACCAAAGCAACAACGTTTT
* * * *
9318673 TCACATAAAAACACCATTAAATTAACAGTGTCTGAAAGATACAAACGCTGCTAATATAGAAGCAT
66 TCTCATAAAAACACCACTAAATTAACAGCGTCTGAAAGATACAAACGCCGCTAATATAGAAGCAT
9318738 TTTT
131 TTTT
* * * ** *
9318742 AGATACAAACACCTTTAAAGTAACGGCAGTTTCAGTTACAAATGCCATCAAAGGAATGACATTTT
1 AGATACAAACACCTTTAAAGTAACGGCAGTTTCAGTTACAAACGCCACCAAAGCAACAACGTTTT
** * * * *
9318807 TCTCATAAAAACGTCACTAAATTAACGGCGTCTGAAAGATACAAACGCCGTTAATATAGAGGTAT
66 TCTCATAAAAACACCACTAAATTAACAGCGTCTGAAAGATACAAACGCCGCTAATATAGAAGCAT
9318872 TTTT
131 TTTT
** *
9318876 AGATACAAA-TGCTTCTAAAGTAACGGC-GTTTTCAG-TATCAAAACGCCACCAAAGCAACAATG
1 AGATACAAACACCTT-TAAAGTAACGGCAG-TTTCAGTTA-C-AAACGCCACCAAAGCAACAACG
9318938 TTTTTCTCATAAAAA
62 TTTTTCTCATAAAAA
9318953 TGCAACTAAT
Statistics
Matches: 176, Mismatches: 31, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
133 6 0.03
134 140 0.80
135 30 0.17
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (134 bp):
AGATACAAACACCTTTAAAGTAACGGCAGTTTCAGTTACAAACGCCACCAAAGCAACAACGTTTT
TCTCATAAAAACACCACTAAATTAACAGCGTCTGAAAGATACAAACGCCGCTAATATAGAAGCAT
TTTT
Found at i:9320670 original size:16 final size:16
Alignment explanation
Indices: 9320625--9320670 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
9320615 AAGATTCAAG
* *
9320625 TCATTTCAAATTTAAA
1 TCATTTGAAATTTGAA
9320641 TCATTATG-AATTTGAA
1 TCATT-TGAAATTTGAA
9320657 TCATTTGAAATTTG
1 TCATTTGAAATTTG
9320671 TACCGAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 2 0.08
16 23 0.88
17 1 0.04
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (16 bp):
TCATTTGAAATTTGAA
Found at i:9320850 original size:16 final size:16
Alignment explanation
Indices: 9320829--9320860 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9320819 TTTGAATAAA
*
9320829 ATTTTAGATTTAAATT
1 ATTTTAGATTCAAATT
9320845 ATTTTAGATTCAAATT
1 ATTTTAGATTCAAATT
9320861 TTATCCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATTTTAGATTCAAATT
Found at i:9321439 original size:32 final size:32
Alignment explanation
Indices: 9321403--9321466 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
9321393 ACACAATAGC
9321403 TTCCAGTTCAAACACAACAACAGCTTCCAGTT
1 TTCCAGTTCAAACACAACAACAGCTTCCAGTT
9321435 TTCCAGTTCAAACACAACAACAGCTTCCAGTT
1 TTCCAGTTCAAACACAACAACAGCTTCCAGTT
9321467 CAAATATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.25
Consensus pattern (32 bp):
TTCCAGTTCAAACACAACAACAGCTTCCAGTT
Found at i:9321478 original size:53 final size:53
Alignment explanation
Indices: 9321395--9321534 Score: 217
Period size: 53 Copynumber: 2.6 Consensus size: 53
9321385 CAGTTCAAAC
* *
9321395 ACAATAGCTTCCAGTTCAAACACAACAACAGCTTCCAGTTTTCCAGTTCAAACACA
1 ACAACAGCTTCCAGTTC-AA-AC-ATAACAGCTTCCAGTTTTCCAGTTCAAACACA
*
9321451 ACAACAGCTTCCAGTTCAAATATAACAGCTTCCAGTTTTCCAGTTCAAACACA
1 ACAACAGCTTCCAGTTCAAACATAACAGCTTCCAGTTTTCCAGTTCAAACACA
*
9321504 ACAGCAGCTTCCAGTTCAAACATAACAGCTT
1 ACAACAGCTTCCAGTTCAAACATAACAGCTT
9321535 TCAATTCAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 60 0.76
54 1 0.01
55 2 0.03
56 16 0.20
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.24
Consensus pattern (53 bp):
ACAACAGCTTCCAGTTCAAACATAACAGCTTCCAGTTTTCCAGTTCAAACACA
Found at i:9321534 original size:21 final size:21
Alignment explanation
Indices: 9321488--9321618 Score: 154
Period size: 21 Copynumber: 6.1 Consensus size: 21
9321478 GCTTCCAGTT
9321488 TTCCAGTTCAAACACAACAGCAGC
1 TTCCAGTTCAAACAC-A-A-CAGC
*
9321512 TTCCAGTTCAAACATAACAGC
1 TTCCAGTTCAAACACAACAGC
* * *
9321533 TTTCAATTCAAACAAAACAGC
1 TTCCAGTTCAAACACAACAGC
* *
9321554 TTTCAGTTCAAACACAATAGC
1 TTCCAGTTCAAACACAACAGC
*
9321575 TTCCAATTCAAACACAACAGC
1 TTCCAGTTCAAACACAACAGC
* *
9321596 TTCCAGCTCAATCACAACAGC
1 TTCCAGTTCAAACACAACAGC
9321617 TT
1 TT
9321619 TCAACTCAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
21 78 0.83
22 1 0.01
23 1 0.01
24 14 0.15
ACGTcount: A:0.39, C:0.30, G:0.08, T:0.23
Consensus pattern (21 bp):
TTCCAGTTCAAACACAACAGC
Found at i:9321564 original size:42 final size:42
Alignment explanation
Indices: 9321494--9321628 Score: 171
Period size: 42 Copynumber: 3.1 Consensus size: 42
9321484 AGTTTTCCAG
*
9321494 TTCAAACACAACAGCAGCTTCCAGTTCAAACATAACAGCTTTCAA
1 TTCAAACA-AA-A-CAGCTTCCAGTTCAAACACAACAGCTTTCAA
* * *
9321539 TTCAAACAAAACAGCTTTCAGTTCAAACACAATAGCTTCCAA
1 TTCAAACAAAACAGCTTCCAGTTCAAACACAACAGCTTTCAA
* * *
9321581 TTCAAACACAACAGCTTCCAGCTCAATCACAACAGCTTTCAA
1 TTCAAACAAAACAGCTTCCAGTTCAAACACAACAGCTTTCAA
*
9321623 CTCAAA
1 TTCAAA
9321629 AAATGTTGTC
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 68 0.86
43 1 0.01
44 2 0.03
45 8 0.10
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (42 bp):
TTCAAACAAAACAGCTTCCAGTTCAAACACAACAGCTTTCAA
Found at i:9322299 original size:17 final size:15
Alignment explanation
Indices: 9322254--9322300 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 15
9322244 ATGAAATAAT
9322254 AAAATAT-TAACAA-
1 AAAATATATAACAAC
*
9322267 ATAATATATAACAAC
1 AAAATATATAACAAC
9322282 AAAATATAATAACTAAC
1 AAAATAT-ATAAC-AAC
9322299 AA
1 AA
9322301 TATGTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 6 0.21
16 5 0.18
17 5 0.18
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATATATAACAAC
Found at i:9326075 original size:15 final size:15
Alignment explanation
Indices: 9326055--9326096 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
9326045 AAACCCCTCT
9326055 CATGGTTTGCAAGCA
1 CATGGTTTGCAAGCA
9326070 CATGGTTTGCAAGCA
1 CATGGTTTGCAAGCA
9326085 CATGGTTTGCAA
1 CATGGTTTGCAA
9326097 CAGAACATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (15 bp):
CATGGTTTGCAAGCA
Found at i:9326123 original size:19 final size:18
Alignment explanation
Indices: 9326081--9326160 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 18
9326071 ATGGTTTGCA
*
9326081 AGCACATGGTTT-GCAAC
1 AGCACATGGTTTCGAAAC
*
9326098 AGAACATGGTTTCGAAAAC
1 AGCACATGGTTTCG-AAAC
9326117 AGCACATGG---C--AAC
1 AGCACATGGTTTCGAAAC
*
9326130 AGAACATGGTTTCGAAAAC
1 AGCACATGGTTTCG-AAAC
9326149 AGCACATGGTTT
1 AGCACATGGTTT
9326161 GTAACAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
13 11 0.22
16 2 0.04
17 11 0.22
18 1 0.02
19 25 0.50
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (18 bp):
AGCACATGGTTTCGAAAC
Found at i:9326129 original size:32 final size:32
Alignment explanation
Indices: 9326093--9326157 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
9326083 CACATGGTTT
9326093 GCAACAGAACATGGTTTCGAAAACAGCACATG
1 GCAACAGAACATGGTTTCGAAAACAGCACATG
9326125 GCAACAGAACATGGTTTCGAAAACAGCACATG
1 GCAACAGAACATGGTTTCGAAAACAGCACATG
9326157 G
1 G
9326158 TTTGTAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (32 bp):
GCAACAGAACATGGTTTCGAAAACAGCACATG
Found at i:9327592 original size:128 final size:126
Alignment explanation
Indices: 9327406--9327779 Score: 392
Period size: 129 Copynumber: 2.9 Consensus size: 126
9327396 ATATAACATT
* * *
9327406 TTATTTAAATATTAATA-TAAAGCCCCTATTAAAGTGACATATTAAATTTTAACATAATATAAAA
1 TTATTTAAA-ATTACTATTATA-CCCCTATTAAA-TTACATATTAAATTTTAACATAATATAAAA
* * * *
9327470 TTAACAACTTATTTAATTACTAAAATACCCTTACCATTACTTTATAGAAATTTTACATGTGGCAT
63 TTAACAACATATTAAATTACTAAAATACCCTTACCATTACTTTATAGAAATTTGACATAT-GC-T
9327535 A
126 A
* *
9327536 TTATTTAAAATTACTATTATACCCCTATTAAATTACATATTAAAATTTAACATAATATAAAATTT
1 TTATTTAAAATTACTATTATACCCCTATTAAATTACATATTAAATTTTAACATAATATAAAATTA
* ** ** * * *
9327601 ACCACATGCTAAATTACTAAGGTATCC-TAGCCATTGCTTTATAAAAATTTGACATATGCTA
66 ACAACATATTAAATTACTAAAATACCCTTA-CCATTACTTTATAGAAATTTGACATATGCTA
* * **** *
9327662 TTTTTTAAAAAAATTACTATAATAATTTTATTAAATTATATATTAAATTTTAACATAATATAAAA
1 TTATTT---AAAATTACTATTATACCCCTATTAAATTACATATTAAATTTTAACATAATATAAAA
* * * * *
9327727 TTAACTACATATTAAATTACTAAAATACTCTTACTATTCCTTCATAGAAATTT
63 TTAACAACATATTAAATTACTAAAATACCCTTACCATTACTTTATAGAAATTT
9327780 ATCACCTAAT
Statistics
Matches: 201, Mismatches: 37, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
126 7 0.03
127 4 0.02
128 72 0.36
129 104 0.52
130 14 0.07
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (126 bp):
TTATTTAAAATTACTATTATACCCCTATTAAATTACATATTAAATTTTAACATAATATAAAATTA
ACAACATATTAAATTACTAAAATACCCTTACCATTACTTTATAGAAATTTGACATATGCTA
Found at i:9327698 original size:22 final size:22
Alignment explanation
Indices: 9327672--9327713 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
9327662 TTTTTTAAAA
9327672 AAATTACTATAAT-AATTTTATT
1 AAATTA-TATAATAAATTTTATT
*
9327694 AAATTATATATTAAATTTTA
1 AAATTATATAATAAATTTTA
9327714 ACATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AAATTATATAATAAATTTTATT
Found at i:9327793 original size:129 final size:129
Alignment explanation
Indices: 9327429--9327826 Score: 366
Period size: 129 Copynumber: 3.1 Consensus size: 129
9327419 AATATAAAGC
* * *
9327429 CCCTATTAAAGTGACATATTAAATTTTAACATAATATAAAATTAACAACTTATTTAATTACTAAA
1 CCCTATTAAA-TTACATATTAAATTTTAACATAATATAAAATTAACAACATATTAAATTACTAAA
* * * * *
9327494 ATACCCTTACCATTACTTTATAGAAATTT-TACATGTGGCATATTATTT---AAAATTACTATTA
65 ATACTCTTACCATTACTTTATAGAAATTTAT-CATAT--AATATTTTTTAAAAAAATTACTATAA
*
9327555 TAC
127 TAA
* * * ** **
9327558 CCCTATTAAATTACATATTAAAATTTAACATAATATAAAATTTACCACATGCTAAATTACTAAGG
1 CCCTATTAAATTACATATTAAATTTTAACATAATATAAAATTAACAACATATTAAATTACTAAAA
* * * **
9327623 TA-TCCTAGCCATTGCTTTATAAAAATTTGA-CATATGCTATTTTTTAAAAAAATTACTATAATA
66 TACTCTTA-CCATTACTTTATAGAAATTT-ATCATATAATATTTTTTAAAAAAATTACTATAATA
9327686 A
129 A
*** * *
9327687 TTTTATTAAATTATATATTAAATTTTAACATAATATAAAATTAACTACATATTAAATTACTAAAA
1 CCCTATTAAATTACATATTAAATTTTAACATAATATAAAATTAACAACATATTAAATTACTAAAA
* * * ** *
9327752 TACTCTTACTATTCCTTCATAGAAATTTATCACCTAATATTTTATT---AAAATTATTATAAT-A
66 TACTCTTACCATTACTTTATAGAAATTTATCATATAATATTTT-TTAAAAAAATTACTATAATAA
9327813 CCCTTATTAAATTA
1 CCC-TATTAAATTA
9327827 AATAAAACTT
Statistics
Matches: 215, Mismatches: 44, Indels: 22
0.77 0.16 0.08
Matches are distributed among these distances:
126 8 0.04
127 26 0.12
128 70 0.33
129 105 0.49
130 6 0.03
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (129 bp):
CCCTATTAAATTACATATTAAATTTTAACATAATATAAAATTAACAACATATTAAATTACTAAAA
TACTCTTACCATTACTTTATAGAAATTTATCATATAATATTTTTTAAAAAAATTACTATAATAA
Found at i:9328792 original size:16 final size:17
Alignment explanation
Indices: 9328771--9328805 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
9328761 ATATTACTTT
9328771 ATTAAAAAAA-ATTATA
1 ATTAAAAAAATATTATA
9328787 ATTAAAAAAATATTATA
1 ATTAAAAAAATATTATA
9328804 AT
1 AT
9328806 AAATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTAAAAAAATATTATA
Found at i:9328924 original size:16 final size:17
Alignment explanation
Indices: 9328889--9328934 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
9328879 ACATGTACTA
9328889 TTTTTTTTCTTAAAAAT
1 TTTTTTTTCTTAAAAAT
* *
9328906 TTTTTTTTCTT-TAATT
1 TTTTTTTTCTTAAAAAT
*
9328922 TTTTTTTTATTAA
1 TTTTTTTTCTTAA
9328935 TATCTATCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTTCTTAAAAAT
Found at i:9328935 original size:15 final size:15
Alignment explanation
Indices: 9328888--9328935 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
9328878 TACATGTACT
**
9328888 ATTTTTTTTCTTAAAA
1 ATTTTTTTT-TTATTA
9328904 ATTTTTTTTTCT-TTA
1 ATTTTTTTTT-TATTA
9328919 ATTTTTTTTTTATTA
1 ATTTTTTTTTTATTA
9328934 AT
1 AT
9328936 ATCTATCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 1 0.04
15 17 0.61
16 10 0.36
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTTTTTTTATTA
Found at i:9333105 original size:2 final size:2
Alignment explanation
Indices: 9333100--9333138 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9333090 CATTGAAAAA
9333100 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9333139 CAGAAAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9335662 original size:14 final size:12
Alignment explanation
Indices: 9335633--9335686 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 12
9335623 AAATTTTTTT
9335633 TAAATAATAAAA
1 TAAATAATAAAA
9335645 -AAATAATAAAGA
1 TAAATAATAAA-A
9335657 GTAAATAATAATAA
1 -TAAATAATAA-AA
*
9335671 AAAATAATAATAA
1 TAAATAATAA-AA
9335684 TAA
1 TAA
9335687 TATTAATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
11 10 0.28
12 1 0.03
13 14 0.39
14 10 0.28
15 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (12 bp):
TAAATAATAAAA
Found at i:9336207 original size:18 final size:20
Alignment explanation
Indices: 9336186--9336222 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
9336176 TTTTCACTTG
9336186 TAACTAT-ATTTT-CAAACT
1 TAACTATGATTTTACAAACT
*
9336204 TAACTTTGATTTTACAAAC
1 TAACTATGATTTTACAAAC
9336223 CTAAACTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 5 0.31
20 5 0.31
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (20 bp):
TAACTATGATTTTACAAACT
Found at i:9339627 original size:18 final size:19
Alignment explanation
Indices: 9339606--9339641 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
9339596 CGTAATTCAA
9339606 AGATTCATAAAAA-TTTTC
1 AGATTCATAAAAACTTTTC
9339624 AGATTCATAAAAACTTTT
1 AGATTCATAAAAACTTTT
9339642 TAGCTTCGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (19 bp):
AGATTCATAAAAACTTTTC
Found at i:9339889 original size:21 final size:21
Alignment explanation
Indices: 9339850--9339892 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9339840 ACATTTAAAG
*
9339850 ATTCGAATTCTAGAGATTCAC
1 ATTCGAATTCTAGAAATTCAC
* *
9339871 ATTCGAATTTTGGAAATTCAC
1 ATTCGAATTCTAGAAATTCAC
9339892 A
1 A
9339893 CACAAAAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (21 bp):
ATTCGAATTCTAGAAATTCAC
Found at i:9340096 original size:21 final size:22
Alignment explanation
Indices: 9340049--9340100 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
9340039 TAAGTTTAAA
*
9340049 GGTTCACATTCGATAAATTTGG
1 GGTTCACATTCAATAAATTTGG
9340071 GGTTCACATTCAATAAATTT-G
1 GGTTCACATTCAATAAATTTGG
9340092 GGTTCACAT
1 GGTTCACAT
9340101 CCAAAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (22 bp):
GGTTCACATTCAATAAATTTGG
Found at i:9340382 original size:21 final size:21
Alignment explanation
Indices: 9340356--9340465 Score: 130
Period size: 21 Copynumber: 5.1 Consensus size: 21
9340346 GATACTCAAA
*
9340356 GAAACTCAAAGCTTCTCATTT
1 GAAACTCAAAGATTCTCATTT
*
9340377 GAAACTCAAATATTCTCATTT
1 GAAACTCAAAGATTCTCATTT
* *
9340398 GAAACTTAAAGATTTTCATTT
1 GAAACTCAAAGATTCTCATTT
* * *
9340419 GAAAACTAAAAAATTCTCACTT
1 G-AAACTCAAAGATTCTCATTT
*
9340441 GAAAACTCAAAGATTCTCACTT
1 G-AAACTCAAAGATTCTCATTT
9340463 GAA
1 GAA
9340466 GATTCACAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
21 40 0.52
22 37 0.48
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (21 bp):
GAAACTCAAAGATTCTCATTT
Found at i:9340442 original size:22 final size:22
Alignment explanation
Indices: 9340357--9340465 Score: 132
Period size: 22 Copynumber: 5.0 Consensus size: 22
9340347 ATACTCAAAG
*
9340357 AAACTCAAAGCTTCTCATTTG-
1 AAACTCAAAGATTCTCATTTGA
*
9340378 AAACTCAAATATTCTCATTTG-
1 AAACTCAAAGATTCTCATTTGA
* *
9340399 AAACTTAAAGATTTTCATTTGA
1 AAACTCAAAGATTCTCATTTGA
* * *
9340421 AAACTAAAAAATTCTCACTTGA
1 AAACTCAAAGATTCTCATTTGA
*
9340443 AAACTCAAAGATTCTCACTTGA
1 AAACTCAAAGATTCTCATTTGA
9340465 A
1 A
9340466 GATTCACAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
21 37 0.49
22 39 0.51
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.33
Consensus pattern (22 bp):
AAACTCAAAGATTCTCATTTGA
Found at i:9341555 original size:16 final size:16
Alignment explanation
Indices: 9341514--9341556 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
9341504 TCAATTTGGG
9341514 TTTTCTTTTTCTCTCA
1 TTTTCTTTTTCTCTCA
9341530 TTTTCCTTTTGTCTC-CA
1 TTTT-CTTTT-TCTCTCA
9341547 TTTT-TTTTTC
1 TTTTCTTTTTC
9341557 CATTTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.08
15 4 0.16
16 4 0.16
17 11 0.44
18 4 0.16
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (16 bp):
TTTTCTTTTTCTCTCA
Found at i:9341579 original size:17 final size:15
Alignment explanation
Indices: 9341550--9341642 Score: 84
Period size: 17 Copynumber: 5.9 Consensus size: 15
9341540 GTCTCCATTT
9341550 TTTTTTCCATTTTTCCA
1 TTTTTT-CATTTTT-CA
*
9341567 TTTTTCCATTTTTTTCA
1 TTTTTTCA--TTTTTCA
9341584 TTTTTTCA-TTTTCA
1 TTTTTTCATTTTTCA
9341598 TTTTTTTTCATTTTTCA
1 --TTTTTTCATTTTTCA
9341615 TTTTTT--TTCTTTCCA
1 TTTTTTCATT-TTT-CA
9341630 TTTTTTCATTTTT
1 TTTTTTCATTTTT
9341643 TTCATCCATT
Statistics
Matches: 65, Mismatches: 2, Indels: 19
0.76 0.02 0.22
Matches are distributed among these distances:
13 2 0.03
14 9 0.14
15 14 0.22
16 13 0.20
17 22 0.34
18 5 0.08
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTCATTTTTCA
Found at i:9341634 original size:31 final size:30
Alignment explanation
Indices: 9341577--9341642 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
9341567 TTTTTCCATT
*
9341577 TTTTTCATTTTTTCATTTTCATTTTTTTTCA
1 TTTTTCATTTTTTCATTTCCA-TTTTTTTCA
9341608 TTTTTCATTTTTTTTC-TTTCCA-TTTTTTCA
1 TTTTTCA--TTTTTTCATTTCCATTTTTTTCA
9341638 TTTTT
1 TTTTT
9341643 TTCATCCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
30 13 0.41
31 7 0.22
32 5 0.16
33 7 0.22
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (30 bp):
TTTTTCATTTTTTCATTTCCATTTTTTTCA
Found at i:9341643 original size:8 final size:8
Alignment explanation
Indices: 9341550--9341643 Score: 81
Period size: 8 Copynumber: 11.8 Consensus size: 8
9341540 GTCTCCATTT
9341550 TTTTTTCCA
1 TTTTTT-CA
*
9341559 TTTTTCCA
1 TTTTTTCA
*
9341567 TTTTTCCA
1 TTTTTTCA
9341575 TTTTTTTCA
1 -TTTTTTCA
9341584 TTTTTTCA
1 TTTTTTCA
9341592 --TTTTCA
1 TTTTTTCA
9341598 TTTTTTTTCA
1 --TTTTTTCA
9341608 -TTTTTCA
1 TTTTTTCA
9341615 TTTTTT--
1 TTTTTTCA
*
9341621 TTCTTTCCA
1 TT-TTTTCA
9341630 TTTTTTCA
1 TTTTTTCA
9341638 TTTTTT
1 TTTTTT
9341644 TCATCCATTA
Statistics
Matches: 72, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
6 8 0.11
7 10 0.14
8 34 0.47
9 14 0.19
10 6 0.08
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTTCA
Found at i:9346070 original size:9 final size:9
Alignment explanation
Indices: 9346056--9346096 Score: 55
Period size: 9 Copynumber: 4.2 Consensus size: 9
9346046 AACTTTACCA
9346056 TTTAAAATT
1 TTTAAAATT
9346065 TTTAAAAATT
1 TTT-AAAATT
9346075 CATTTAAAATT
1 --TTTAAAATT
9346086 TTTAAAATT
1 TTTAAAATT
9346095 TT
1 TT
9346097 CATCATTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 14 0.48
10 6 0.21
11 6 0.21
12 3 0.10
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (9 bp):
TTTAAAATT
Found at i:9346202 original size:12 final size:12
Alignment explanation
Indices: 9346185--9346221 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
9346175 TAATCATACA
9346185 AAATAAAAAAAT
1 AAATAAAAAAAT
**
9346197 AAATAACTAAAT
1 AAATAAAAAAAT
9346209 AAATAAAAAAAT
1 AAATAAAAAAAT
9346221 A
1 A
9346222 CCAAAAACAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:9346528 original size:22 final size:22
Alignment explanation
Indices: 9346485--9346533 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
9346475 TTCTTCAGAT
*
9346485 TTCT-CATTTTTCCTTTCTCTC
1 TTCTCCATTTTTCCTTTCCCTC
9346506 TTCTCCATCTTTT-CTTTCCCTC
1 TTCTCCAT-TTTTCCTTTCCCTC
9346528 TCTCTC
1 T-TCTC
9346534 TAGACTAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.17
22 12 0.50
23 8 0.33
ACGTcount: A:0.04, C:0.39, G:0.00, T:0.57
Consensus pattern (22 bp):
TTCTCCATTTTTCCTTTCCCTC
Found at i:9356421 original size:81 final size:82
Alignment explanation
Indices: 9356286--9356598 Score: 350
Period size: 81 Copynumber: 3.9 Consensus size: 82
9356276 CCTCTTAGAT
* * * * *
9356286 TTTTGAATTTAAAATTTTGTTGCCTTTGGTTAAAGG-AGCCTTTTAACATTTAAAGTTTCATTGT
1 TTTTGAATTTAAAGTTTCGTTGCCTCTGGTTAGAGGAAGCCTTTTAACATTTAAAGTTTCATTGC
9356350 CTTTGGTTAGAA-GAGCC
66 CTTTGGTTA-AAGGAGCC
* * *
9356367 TTTTGAATTTAAAGTTTCATTGCCTCTAGTTAGAGGAA-CCTTTTATCATTTAAAGTTTCATTGC
1 TTTTGAATTTAAAGTTTCGTTGCCTCTGGTTAGAGGAAGCCTTTTAACATTTAAAGTTTCATTGC
* * *
9356431 CTCTAGTTAAAGGAGTC
66 CTTTGGTTAAAGGAGCC
* * * * **
9356448 TTTTAAATTTAAAGTTTCGTTGCCTCTGATTAGA-GAAGCTTTTTAACATTTAAAATTTTGTTGC
1 TTTTGAATTTAAAGTTTCGTTGCCTCTGGTTAGAGGAAGCCTTTTAACATTTAAAGTTTCATTGC
* * *
9356512 CTTTGATTAAATGAGCA
66 CTTTGGTTAAAGGAGCC
* * ** *
9356529 TTTTGAACTTAAAGTTTCGTTGCCTCTGGTCA-AATAAGCCTTTTAA-ATTTAAAGTTTCATAGC
1 TTTTGAATTTAAAGTTTCGTTGCCTCTGGTTAGAGGAAGCCTTTTAACATTTAAAGTTTCATTGC
9356592 CTTTGGT
66 CTTTGGT
9356599 CAGAATAGCC
Statistics
Matches: 191, Mismatches: 37, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
80 25 0.13
81 165 0.86
82 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.43
Consensus pattern (82 bp):
TTTTGAATTTAAAGTTTCGTTGCCTCTGGTTAGAGGAAGCCTTTTAACATTTAAAGTTTCATTGC
CTTTGGTTAAAGGAGCC
Found at i:9356600 original size:40 final size:40
Alignment explanation
Indices: 9356286--9356598 Score: 277
Period size: 40 Copynumber: 7.8 Consensus size: 40
9356276 CCTCTTAGAT
* * ** *
9356286 TTTTGAATTTAAAATTTTGTTGCCTTTGGTTAAAGGAGCC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* *
9356326 TTTTAACATTTAAAGTTTCATTGTCTTTGGTTAGAA-GAGCC
1 TTTTAA-ATTTAAAGTTTCATTGCCTCTGGTTA-AAGGAGCC
* * * *
9356367 TTTTGAATTTAAAGTTTCATTGCCTCTAGTTAGAGGAACC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* * *
9356407 TTTTATCATTTAAAGTTTCATTGCCTCTAGTTAAAGGAGTC
1 TTTTA-AATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* * * * *
9356448 TTTTAAATTTAAAGTTTCGTTGCCTCTGATTAGAGAAGCT
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* ** * * * *
9356488 TTTTAACATTTAAAATTTTGTTGCCTTTGATTAAATGAGCA
1 TTTTAA-ATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* * * * **
9356529 TTTTGAACTTAAAGTTTCGTTGCCTCTGGTCAAATAAGCC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
* *
9356569 TTTTAAATTTAAAGTTTCATAGCCTTTGGT
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGT
9356599 CAGAATAGCC
Statistics
Matches: 223, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.00
40 120 0.54
41 100 0.45
42 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.43
Consensus pattern (40 bp):
TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAAAGGAGCC
Found at i:9356609 original size:40 final size:40
Alignment explanation
Indices: 9356286--9356662 Score: 271
Period size: 40 Copynumber: 9.2 Consensus size: 40
9356276 CCTCTTAGAT
* * ** *
9356286 TTTTGAATTTAAAATTTTGTTGCCTTTGGTTA-AAGGAGCC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAA-GAGCC
* *
9356326 TTTTAACATTTAAAGTTTCATTGTCTTTGGTTAGAAGAGCC
1 TTTTAA-ATTTAAAGTTTCATTGCCTCTGGTTAGAAGAGCC
* * * *
9356367 TTTTGAATTTAAAGTTTCATTGCCTCTAGTTAGAGGAACC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAAGAGCC
* * *
9356407 TTTTATCATTTAAAGTTTCATTGCCTCTAGTTA-AAGGAGTC
1 TTTTA-AATTTAAAGTTTCATTGCCTCTGGTTAGAA-GAGCC
* * *
9356448 TTTTAAATTTAAAGTTTCGTTGCCTCTGATTAG-AGAAGCT
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAAG-AGCC
* ** * * *
9356488 TTTTAACATTTAAAATTTTGTTGCCTTTGATTA-AATGAGCA
1 TTTTAA-ATTTAAAGTTTCATTGCCTCTGGTTAGAA-GAGCC
* * * * *
9356529 TTTTGAACTTAAAGTTTCGTTGCCTCTGGTCA-AATAAGCC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAA-GAGCC
* * * *
9356569 TTTTAAATTTAAAGTTTCATAGCCTTTGGTCAGAATAGCC
1 TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAAGAGCC
* * *
9356609 TTTTTAAAATTTCAAAAGTTATCA-AGCCTCTGTTTAGAAAAGCC
1 -TTTT-AAATTT--AAAGTT-TCATTGCCTCTGGTTAGAAGAGCC
*
9356653 TTTCAAATTT
1 TTTTAAATTT
9356663 TCTTTGAAAA
Statistics
Matches: 276, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
39 1 0.00
40 128 0.46
41 104 0.38
42 15 0.05
43 3 0.01
44 22 0.08
45 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (40 bp):
TTTTAAATTTAAAGTTTCATTGCCTCTGGTTAGAAGAGCC
Found at i:9357801 original size:21 final size:22
Alignment explanation
Indices: 9357777--9357825 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
9357767 TTTTATTTTC
*
9357777 TATTTTGATTTTGA-TTTTAT-T
1 TATTTTG-TGTTGATTTTTATGT
9357798 TATTTTGTGTTGATTTTTATGT
1 TATTTTGTGTTGATTTTTATGT
9357820 TATTTT
1 TATTTT
9357826 TTATTTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 5 0.20
21 13 0.52
22 7 0.28
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.71
Consensus pattern (22 bp):
TATTTTGTGTTGATTTTTATGT
Found at i:9357855 original size:29 final size:28
Alignment explanation
Indices: 9357764--9357873 Score: 75
Period size: 28 Copynumber: 3.8 Consensus size: 28
9357754 TTTTTCTCTC
*
9357764 TTTTTTTATTTTCTATT-TTGATT-TTGAT
1 TTTTTTTATTTTATATTATT-ATTGTT-AT
* * * *
9357792 TTTATTTATTTTGTGTTGATTTTTATGTTAT
1 TTTTTTTATTTTATATT-A-TTAT-TGTTAT
9357823 TTTTTATT-TTTTATGA-TATTATTGTTAT
1 TTTTT-TTATTTTAT-ATTATTATTGTTAT
9357851 ATTTTTTTATTTTATATTATTAT
1 -TTTTTTTATTTTATATTATTAT
9357874 CAGTAATAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
28 23 0.36
29 20 0.31
30 2 0.03
31 15 0.23
32 4 0.06
ACGTcount: A:0.19, C:0.01, G:0.07, T:0.73
Consensus pattern (28 bp):
TTTTTTTATTTTATATTATTATTGTTAT
Found at i:9359601 original size:64 final size:63
Alignment explanation
Indices: 9359501--9359626 Score: 162
Period size: 64 Copynumber: 2.0 Consensus size: 63
9359491 GGATTTAGGG
* * * * * **
9359501 TTTATATTTTTATAAAATGATTATTTAAGGTATTTTTGTATAAAAAATGTCTCAAATAATCCT
1 TTTATATTTTGAAAAAAAGATTATTTAAAGTATTTTTGGATAAAAAATCCCTCAAATAATCCT
* *
9359564 TTTATATTTTGACAAAAAAGATTATTTAAAGTATTTTTGGATCAAAAATCCCTTAAATAATCC
1 TTTATATTTTGA-AAAAAAGATTATTTAAAGTATTTTTGGATAAAAAATCCCTCAAATAATCC
9359627 CATTCTTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
63 11 0.21
64 42 0.79
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.44
Consensus pattern (63 bp):
TTTATATTTTGAAAAAAAGATTATTTAAAGTATTTTTGGATAAAAAATCCCTCAAATAATCCT
Found at i:9359735 original size:124 final size:127
Alignment explanation
Indices: 9359584--9359817 Score: 323
Period size: 124 Copynumber: 1.9 Consensus size: 127
9359574 GACAAAAAAG
* * ** * **
9359584 ATTATTTAAAGTATTTTTGGATCAAAAATCCCTTAAATAATCCCAT-TCTTTTTTTAAAAGGCAT
1 ATTATTTAAAGCATTTTTAGATCAAAAAAACCTTAAATAATACCATAAATTTTTTTAAAAGGCAT
*
9359648 TATTT-AAG-GTTTTTTGACAAAAAATACCTTAAATAATACCTTTTAAAAAAATACGATGAC
66 TATTTGAAGTATTTTTTGACAAAAAATACCTTAAATAATACCTTTTAAAAAAATACGATGAC
*
9359708 ATTATTTAAAGCATTTTTAGA-CAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAAGGCA
1 ATTATTTAAAGCATTTTTAGATC-AAAAAAACCTTAAATAATACCATAAATTTTTTTAAAAGGCA
* * *
9359772 TTATTTGAAGTATTTTTTGTCCAAAAATACCTTAAATAATGCCTTT
65 TTATTTGAAGTATTTTTTGACAAAAAATACCTTAAATAATACCTTT
9359818 ATATTTTTTA
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
123 1 0.01
124 38 0.40
125 21 0.22
126 3 0.03
127 31 0.33
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (127 bp):
ATTATTTAAAGCATTTTTAGATCAAAAAAACCTTAAATAATACCATAAATTTTTTTAAAAGGCAT
TATTTGAAGTATTTTTTGACAAAAAATACCTTAAATAATACCTTTTAAAAAAATACGATGAC
Found at i:9359840 original size:188 final size:188
Alignment explanation
Indices: 9359584--9359923 Score: 449
Period size: 190 Copynumber: 1.8 Consensus size: 188
9359574 GACAAAAAAG
* * *
9359584 ATTATTTAAAGTATTTTTGGATCAAAAATCCCTTAAATAATCCCATTCTTTTTTTAAAAGGCATT
1 ATTATTTAAAGTATTTTTGGATCAAAAATACCTTAAATAATCCCATTATTTTTTTAAAAAGCATT
* *
9359649 ATTT-AAG-GTTTTTTGA-CAAAAAATACCTTAAATAATACCTTTTAAAAAAAT-ACGATGACAT
66 ATTTAAAGCATTTTTT-ATCAAAAAATACATTAAATAATACCTTTTAAAAAAATGA-GATGAC--
9359710 TATTTAAAGCATTTTTAG-ACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAAGGC
127 TATTTAAAGCATTTTTAGAACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAAGGC
* * * *
9359771 ATTATTTGAAGTATTTTTTG-TCCAAAAATACCTTAAATAATGCCTTTATATTTTTTAAAAAGCA
1 ATTATTTAAAGTATTTTTGGAT-CAAAAATACCTTAAATAATCCCATTAT-TTTTTTAAAAAGCA
* * * *
9359835 TTATTTAAAGCATTTTTTATCCAAAAATGCATTAAATAATATCTTTTAAAAAAATGAGTTGACTA
64 TTATTTAAAGCATTTTTTATCAAAAAATACATTAAATAATACCTTTTAAAAAAATGAGATGACTA
* *
9359900 TTTAATGCATTTTTGGAACAAAAA
129 TTTAAAGCATTTTTAGAACAAAAA
9359924 TGCCTTAAAT
Statistics
Matches: 131, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
186 1 0.01
187 41 0.31
188 35 0.27
189 11 0.08
190 42 0.32
191 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (188 bp):
ATTATTTAAAGTATTTTTGGATCAAAAATACCTTAAATAATCCCATTATTTTTTTAAAAAGCATT
ATTTAAAGCATTTTTTATCAAAAAATACATTAAATAATACCTTTTAAAAAAATGAGATGACTATT
TAAAGCATTTTTAGAACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAAGGC
Found at i:9359852 original size:63 final size:63
Alignment explanation
Indices: 9359578--9359880 Score: 224
Period size: 63 Copynumber: 4.9 Consensus size: 63
9359568 TATTTTGACA
* * * * * *
9359578 AAAAAG-ATTATTTAAAGTATTTTTGGAT-CAAAAATCCCTTAAATAATCCCATTCT-TTTTTT
1 AAAAAGCATTATTTAAAGCATTTTTTG-TCCAAAAATACCTTAAATAATACCTTTATATTTTTT
* * * * *****
9359639 AAAAGGCATTATTT-AAG-GTTTTTTGACAAAAAATACCTTAAATAATACCTTT-TAAAAAAAT
1 AAAAAGCATTATTTAAAGCATTTTTTGTCCAAAAATACCTTAAATAATACCTTTAT-ATTTTTT
** * * * * * * * *
9359700 ACGATGACATTATTTAAAGCATTTTTAGACAAAAAAAATCTTAAATAATACC-ATAAATTTTTTT
1 AAAAAG-CATTATTTAAAGCATTTTTTGTCCAAAAATACCTTAAATAATACCTTTATA-TTTTTT
* * * *
9359764 AAAAGGCATTATTTGAAGTATTTTTTGTCCAAAAATACCTTAAATAATGCCTTTATATTTTTT
1 AAAAAGCATTATTTAAAGCATTTTTTGTCCAAAAATACCTTAAATAATACCTTTATATTTTTT
* * * *
9359827 AAAAAGCATTATTTAAAGCATTTTTTATCCAAAAATGCATTAAATAATATCTTT
1 AAAAAGCATTATTTAAAGCATTTTTTGTCCAAAAATACCTTAAATAATACCTTT
9359881 TAAAAAAATG
Statistics
Matches: 184, Mismatches: 48, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
59 1 0.01
60 27 0.15
61 12 0.07
62 15 0.08
63 94 0.51
64 35 0.19
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (63 bp):
AAAAAGCATTATTTAAAGCATTTTTTGTCCAAAAATACCTTAAATAATACCTTTATATTTTTT
Found at i:9359933 original size:188 final size:186
Alignment explanation
Indices: 9359584--9359967 Score: 440
Period size: 188 Copynumber: 2.0 Consensus size: 186
9359574 GACAAAAAAG
* * *
9359584 ATTATTTAAAGTATTTTTGGATCAAAAATCCCTTAAATAATCCCATTCTTTTTTTAAAAGGCATT
1 ATTATTTAAAGTATTTTTGGATCAAAAATACCTTAAATAATCCCATTATTTTTTTAAAAAGCATT
* *
9359649 ATTTAAGGTTTTTTGACAAAAAATACCTTAAATAATACCTTTTAAAAAAATACGATGACATTATT
66 ATTTAAGATTTTTTGACAAAAAATACATTAAATAATACCTTTTAAAAAAATACGATGACA-TATT
9359714 TAAAGCATTTTTAGACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAA-AGGC
130 TAAAGCATTTTTAGACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAGA-GC
* * * *
9359771 ATTATTTGAAGTATTTTTTG-TCCAAAAATACCTTAAATAATGCCTTTATATTTTTTAAAAAGCA
1 ATTATTTAAAGTATTTTTGGAT-CAAAAATACCTTAAATAATCCCATTAT-TTTTTTAAAAAGCA
* * * *
9359835 TTATTTAAAGCATTTTTT-ATCCAAAAATGCATTAAATAATATCTTTTAAAAAAATGA-GTTGAC
64 TTATTT-AAG-ATTTTTTGA-CAAAAAATACATTAAATAATACCTTTTAAAAAAAT-ACGATGAC
* * * * * * **
9359898 -TATTTAATGCATTTTT-G-GAACAAAAATGCCTTAAATAGTCCCTTTTATTTTTTTAAAGAGC
125 ATATTTAAAGCATTTTTAGACAAAAAAAAT--CTTAAATAATACCATAAATTTTTTTAAAGAGC
9359959 ATTATTTAA
1 ATTATTTAA
9359968 GGCATTTTCA
Statistics
Matches: 166, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
186 9 0.05
187 42 0.25
188 67 0.40
189 5 0.03
190 42 0.25
191 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.40
Consensus pattern (186 bp):
ATTATTTAAAGTATTTTTGGATCAAAAATACCTTAAATAATCCCATTATTTTTTTAAAAAGCATT
ATTTAAGATTTTTTGACAAAAAATACATTAAATAATACCTTTTAAAAAAATACGATGACATATTT
AAAGCATTTTTAGACAAAAAAAATCTTAAATAATACCATAAATTTTTTTAAAGAGC
Found at i:9360061 original size:129 final size:125
Alignment explanation
Indices: 9359793--9360114 Score: 389
Period size: 129 Copynumber: 2.5 Consensus size: 125
9359783 ATTTTTTGTC
* * * * * *
9359793 CAAAAATACCTTAAATAATGCC-TTTATATTTTTTAAAAAGCATTATTTAAAGCATTTTTTATCC
1 CAAAAATGCCTTAAATAATCCCTTTTAT-TTTTTTAAAGAGCATTATTTAAGGCATTTTTGATCA
* * ** *
9359857 AAAAATGCATTAAATAATATCTTTTAAAAAAATGAGTTGACTATTTAATGCATTTTTGGAA
65 AAAAATACATCAAATAATATCTTTTAAAAAAATGAGAGGACTATTTAACGCATTTTTGGAA
* *
9359918 CAAAAATGCCTTAAATAGTCCCTTTTATTTTTTTAAAGAGCATTATTTAAGGCATTTTCAATGGT
1 CAAAAATGCCTTAAATAATCCCTTTTATTTTTTTAAAGAGCATTATTTAAGGCATTTT---TGAT
*
9359983 CAAAAAATACATCAAATAAT-TCCTTTTAAAAAAAATGAGAGGACTATTTAACG-TTTTTTGGGA
63 CAAAAAATACATCAAATAATAT-CTTTT-AAAAAAATGAGAGGACTATTTAACGCATTTTT-GGA
9360046 A
125 A
* ** * *
9360047 CAAAAATGCATTAAATAATCTATTTTATTTTTTTAAAGAACATTATTTAAGGTATTTTTGATCAA
1 CAAAAATGCCTTAAATAATCCCTTTTATTTTTTTAAAGAGCATTATTTAAGGCATTTTTGATCAA
9360112 AAA
66 AAA
9360115 CCAGCTTAAA
Statistics
Matches: 169, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
125 47 0.28
126 14 0.08
127 1 0.01
128 29 0.17
129 78 0.46
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.39
Consensus pattern (125 bp):
CAAAAATGCCTTAAATAATCCCTTTTATTTTTTTAAAGAGCATTATTTAAGGCATTTTTGATCAA
AAAATACATCAAATAATATCTTTTAAAAAAATGAGAGGACTATTTAACGCATTTTTGGAA
Found at i:9360979 original size:45 final size:43
Alignment explanation
Indices: 9360858--9361005 Score: 163
Period size: 47 Copynumber: 3.3 Consensus size: 43
9360848 TTTCATCAAT
* * * *
9360858 GAAATTTATTTTTATTTTTAAATTTTCCACAATTTGGGCCAATTTA
1 GAAATTT-TTTTTATTTCTAAATTTT-CACCATTT-GGTCTATTTA
*
9360904 GAAAATTTTTTCTTATTTCTAAATTTTTCACCATTTAGGTCTATGTA
1 G-AAATTTTTT-TTATTTCTAAA-TTTTCACCATTT-GGTCTATTTA
9360951 GAAATTTTTTTTATTTCTAAATTGTTCACCATTTGGATCTATTTA
1 GAAATTTTTTTTATTTCTAAATT-TTCACCATTTGG-TCTATTTA
9360996 G-AATTTTTTT
1 GAAATTTTTTT
9361006 GTTTCTTTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
44 13 0.14
45 29 0.32
46 13 0.14
47 31 0.34
48 4 0.04
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.53
Consensus pattern (43 bp):
GAAATTTTTTTTATTTCTAAATTTTCACCATTTGGTCTATTTA
Found at i:9362150 original size:20 final size:20
Alignment explanation
Indices: 9362125--9362162 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9362115 TTTAGAAAAA
9362125 TTTCAAAAAAAAATCTTCTT
1 TTTCAAAAAAAAATCTTCTT
9362145 TTTCAAAAAAAAATCTTC
1 TTTCAAAAAAAAATCTTC
9362163 AAAAAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (20 bp):
TTTCAAAAAAAAATCTTCTT
Found at i:9362677 original size:43 final size:43
Alignment explanation
Indices: 9362579--9363005 Score: 224
Period size: 43 Copynumber: 9.9 Consensus size: 43
9362569 AAAACTCTTA
* ** * * *
9362579 TAAACAGATGCTCCATAACCTTTGAGAAATAAATAAAGCTCATT
1 TAAACAGAAGCTTAATAA-CTTTGAAAAATAAATAAAGCTCCTC
* * * **
9362623 TAAGCA-AAGGCTTAATGACTTTGAAAAGA-AAATAAGGCTTTTC
1 TAAACAGAA-GCTTAATAACTTTGAAAA-ATAAATAAAGCTCCTC
* * * * * *
9362666 TAAACATAGGC-TAACAACTTTTAAAAATAAATAAATCTTCTC
1 TAAACAGAAGCTTAATAACTTTGAAAAATAAATAAAGCTCCTC
* * * * *
9362708 TAAGCAGAAGCTCAACAACATTGAAAAGA-AAATAAGGCTCCTC
1 TAAACAGAAGCTTAATAACTTTGAAAA-ATAAATAAAGCTCCTC
* * * *
9362751 TAAACAGAAGCTCAATGACTTTTAAAAATAAATAAAGCTCTTC
1 TAAACAGAAGCTTAATAACTTTGAAAAATAAATAAAGCTCCTC
* *
9362794 TAAACAAAAGCTTAATAACTTCT-AAAAGTTAAAT-AAGACTCCTC
1 TAAACAGAAGCTTAATAACTT-TGAAAA-ATAAATAAAG-CTCCTC
* * * ** * *
9362838 TAAATAG-AGGTTCACGACTTCTGAAAAATAAAT-AAGGTCCATT
1 TAAACAGAAGCTTAATAACTT-TGAAAAATAAATAAAGCTCC-TC
* * * * * *
9362881 TAAATAGAGGCTCAACAACTTTTAAAAATAAATAAAGCTCTTC
1 TAAACAGAAGCTTAATAACTTTGAAAAATAAATAAAGCTCCTC
** * * * * * * *
9362924 TAAGTAAAAACTTAACAAATTTGAAAAGTAAATAAGGCTCATC
1 TAAACAGAAGCTTAATAACTTTGAAAAATAAATAAAGCTCCTC
* * *
9362967 TAAACAGAGGCTCAACAACTTT-AAAAACTAAATAAAGCT
1 TAAACAGAAGCTTAATAACTTTGAAAAA-TAAATAAAGCT
9363006 TCTTTAAGCA
Statistics
Matches: 292, Mismatches: 76, Indels: 31
0.73 0.19 0.08
Matches are distributed among these distances:
41 1 0.00
42 39 0.13
43 205 0.70
44 47 0.16
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.26
Consensus pattern (43 bp):
TAAACAGAAGCTTAATAACTTTGAAAAATAAATAAAGCTCCTC
Found at i:9362805 original size:86 final size:85
Alignment explanation
Indices: 9362605--9362872 Score: 274
Period size: 85 Copynumber: 3.1 Consensus size: 85
9362595 AACCTTTGAG
* * **
9362605 AAATAAATAAAGCTCATT-TAAGCAAAGGCTTAATGACTTTGAAAAGAAAATAAGGCTTTTCTAA
1 AAATAAATAAAGCTC-TTCTAAGCAAAAGCTTAATAAC-TTGAAAAGAAAATAAGGCTCCTCTAA
* *
9362669 ACATAGGCT-AACAACTTTTAA
64 ACAGAGGCTCAACGACTTTTAA
* * * *
9362690 AAATAAATAAATCT-TCTCTAAGCAGAAGCTCAACAACATTGAAAAGAAAATAAGGCTCCTCTAA
1 AAATAAATAAAGCTCT-TCTAAGCAAAAGCTTAATAAC-TTGAAAAGAAAATAAGGCTCCTCTAA
* *
9362754 ACAGAAGCTCAATGACTTTTAA
64 ACAGAGGCTCAACGACTTTTAA
* * * *
9362776 AAATAAATAAAGCTCTTCTAAACAAAAGCTTAATAACTTCTAAAAGTTAAATAAGACTCCTCTAA
1 AAATAAATAAAGCTCTTCTAAGCAAAAGCTTAATAACTT-GAAAAG-AAAATAAGGCTCCTCTAA
* * *
9362841 ATAGAGGTTC-ACGACTTCTGAA
64 ACAGAGGCTCAACGACTT-TTAA
9362863 AAATAAATAA
1 AAATAAATAA
9362873 GGTCCATTTA
Statistics
Matches: 150, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
83 1 0.01
84 1 0.01
85 60 0.40
86 51 0.34
87 37 0.25
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (85 bp):
AAATAAATAAAGCTCTTCTAAGCAAAAGCTTAATAACTTGAAAAGAAAATAAGGCTCCTCTAAAC
AGAGGCTCAACGACTTTTAA
Found at i:9362871 original size:130 final size:129
Alignment explanation
Indices: 9362706--9363001 Score: 341
Period size: 130 Copynumber: 2.3 Consensus size: 129
9362696 ATAAATCTTC
* * * **
9362706 TCTAAGCAGAAGCTCAACAACATTGAAAAGA-AAATAAGGCTCC-TCTAAACAGAAGCTCAATGA
1 TCTAAACAGAGGCTCAACAACTTTGAAAA-ATAAATAAGG-TCCATCTAAACAGAAGCTCAACAA
* * *
9362769 CTTTTAAAAATAAATAAAGCTCTTCTAAACAAAAGCTTAATAACTTCT-AAAAGTTAAATAAGAC
64 CTTTTAAAAATAAATAAAGCTCTTCTAAACAAAAACTTAACAAATT-TGAAAAG-TAAATAAGAC
*
9362833 TCC
127 TCA
* * * * * *
9362836 TCTAAATAGAGGTTC-ACGACTTCTGAAAAATAAATAAGGTCCATTTAAATAGAGGCTCAACAAC
1 TCTAAACAGAGGCTCAACAACTT-TGAAAAATAAATAAGGTCCATCTAAACAGAAGCTCAACAAC
** *
9362900 TTTTAAAAATAAATAAAGCTCTTCTAAGTAAAAACTTAACAAATTTGAAAAGTAAATAAGGCTCA
65 TTTTAAAAATAAATAAAGCTCTTCTAAACAAAAACTTAACAAATTTGAAAAGTAAATAAGACTCA
9362965 TCTAAACAGAGGCTCAACAACTTT-AAAAACTAAATAA
1 TCTAAACAGAGGCTCAACAACTTTGAAAAA-TAAATAA
9363002 AGCTTCTTTA
Statistics
Matches: 139, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
128 5 0.04
129 42 0.30
130 92 0.66
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (129 bp):
TCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAGGTCCATCTAAACAGAAGCTCAACAACT
TTTAAAAATAAATAAAGCTCTTCTAAACAAAAACTTAACAAATTTGAAAAGTAAATAAGACTCA
Found at i:9363028 original size:21 final size:21
Alignment explanation
Indices: 9363002--9363044 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9362992 AACTAAATAA
9363002 AGCTTCTTTAAGCAAAGGCTC
1 AGCTTCTTTAAGCAAAGGCTC
*
9363023 AGCTTCTTTAAGCAAATGCTC
1 AGCTTCTTTAAGCAAAGGCTC
9363044 A
1 A
9363045 ACAACTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (21 bp):
AGCTTCTTTAAGCAAAGGCTC
Found at i:9363052 original size:21 final size:21
Alignment explanation
Indices: 9363007--9363054 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
9362997 AATAAAGCTT
* **
9363007 CTTTAAGCAAAGGCTCAGCTT
1 CTTTAAGCAAAGGCTCAACAA
*
9363028 CTTTAAGCAAATGCTCAACAA
1 CTTTAAGCAAAGGCTCAACAA
9363049 CTTTAA
1 CTTTAA
9363055 AAACTTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (21 bp):
CTTTAAGCAAAGGCTCAACAA
Found at i:9363070 original size:43 final size:44
Alignment explanation
Indices: 9363023--9363120 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 44
9363013 GCAAAGGCTC
*
9363023 AGCTTCTTTAAGCAAATG-CTCAACAACTTTAAAAACTTAAA-AA
1 AGCTTCTTTAAG-AAATGACTCAACAACTTTAAAAACATAAATAA
* * * *
9363066 AGCTTATTCAAGTAATGACTCAACAACTTTTAAAACATAAATAA
1 AGCTTCTTTAAGAAATGACTCAACAACTTTAAAAACATAAATAA
*
9363110 AGCTCCTTTAA
1 AGCTTCTTTAA
9363121 ATAGAGGCTC
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
42 4 0.09
43 31 0.69
44 10 0.22
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (44 bp):
AGCTTCTTTAAGAAATGACTCAACAACTTTAAAAACATAAATAA
Found at i:9363151 original size:43 final size:42
Alignment explanation
Indices: 9363091--9363246 Score: 177
Period size: 43 Copynumber: 3.6 Consensus size: 42
9363081 TGACTCAACA
* *
9363091 ACTTTTAAAACATAAATAAAGCTCCTTTAAATAGAGGCTCATA
1 ACTTTTAAAA-ATAAATAAAGCTCCTTTAAATAGAGACTCATG
* *
9363134 ATTTTTGAAAAATAAATAAAGCTCCTCTAAATAGAGACTCATG
1 ACTTTT-AAAAATAAATAAAGCTCCTTTAAATAGAGACTCATG
* * * * ** *
9363177 ACTTTTGAAAAATAAACAAGGCTCTTTTAAATAAAAGTTTAATG
1 ACTTTT-AAAAATAAATAAAGCTCCTTTAAAT-AGAGACTCATG
9363221 ACTTTTAAAAATAAATAAAGCTCCTT
1 ACTTTTAAAAATAAATAAAGCTCCTT
9363247 GACAATCATG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
43 78 0.82
44 17 0.18
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (42 bp):
ACTTTTAAAAATAAATAAAGCTCCTTTAAATAGAGACTCATG
Found at i:9364640 original size:23 final size:23
Alignment explanation
Indices: 9364614--9364660 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
9364604 TTTTTTTCTC
*
9364614 TCATCTTACAT-TTTTTTATTTTT
1 TCATCTTA-ATATTTTTCATTTTT
*
9364637 TCATTTTAATATTTTTCATTTTT
1 TCATCTTAATATTTTTCATTTTT
9364660 T
1 T
9364661 TCATTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (23 bp):
TCATCTTAATATTTTTCATTTTT
Found at i:9364669 original size:16 final size:16
Alignment explanation
Indices: 9364622--9364704 Score: 72
Period size: 15 Copynumber: 5.5 Consensus size: 16
9364612 TCTCATCTTA
9364622 CATTTTTTT-ATTTTTT
1 CATTTTTTTCA-TTTTT
**
9364638 CATTTTAAT-ATTTTT
1 CATTTTTTTCATTTTT
9364653 CATTTTTTTCATTTTT
1 CATTTTTTTCATTTTT
*
9364669 C----TCTTCATTTTT
1 CATTTTTTTCATTTTT
9364681 CATTTTTTTTCATTTTT
1 CA-TTTTTTTCATTTTT
9364698 C-TTTTTT
1 CATTTTTT
9364705 CATCCATTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
12 11 0.20
15 18 0.33
16 15 0.27
17 11 0.20
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.75
Consensus pattern (16 bp):
CATTTTTTTCATTTTT
Found at i:9364694 original size:17 final size:18
Alignment explanation
Indices: 9364657--9364705 Score: 75
Period size: 19 Copynumber: 2.8 Consensus size: 18
9364647 ATTTTTCATT
9364657 TTTTTCATTTTTCTCTTCA
1 TTTTTCATTTTT-TCTTCA
9364676 TTTTTCATTTTTT-TTCA
1 TTTTTCATTTTTTCTTCA
9364693 TTTTTC-TTTTTTC
1 TTTTTCATTTTTTC
9364706 ATCCATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.21
17 10 0.34
18 1 0.03
19 12 0.41
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTCATTTTTTCTTCA
Found at i:9371976 original size:12 final size:12
Alignment explanation
Indices: 9371956--9371992 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
9371946 TTCCTCAAAT
*
9371956 TTCTCTTTCCTC
1 TTCTTTTTCCTC
9371968 TTCTTTTTCCTC
1 TTCTTTTTCCTC
*
9371980 TTCTTTTTTCTC
1 TTCTTTTTCCTC
9371992 T
1 T
9371993 CCCTCTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTCTTTTTCCTC
Found at i:9373903 original size:29 final size:28
Alignment explanation
Indices: 9373852--9373920 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
9373842 TTATTTAATA
*
9373852 AATA-ATATGTATATAATAAAATTATACT
1 AATAGATAT-TATATAATAAAATTAAACT
*
9373880 AATTAGATATTATATAAGT-AAATTAAATT
1 AA-TAGATATTATATAA-TAAAATTAAACT
9373909 AATAG-TATTATA
1 AATAGATATTATA
9373921 ATTTATATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 7 0.19
28 5 0.14
29 19 0.53
30 5 0.14
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.41
Consensus pattern (28 bp):
AATAGATATTATATAATAAAATTAAACT
Found at i:9400681 original size:15 final size:15
Alignment explanation
Indices: 9400636--9400695 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
9400626 ATTTTTTAAA
*
9400636 ATTATAATTTCAAAAT
1 ATTAAAATTT-AAAAT
*
9400652 A-AAAAATTTATAAAT
1 ATTAAAATTTA-AAAT
*
9400667 ATTAAATTTTAAAAT
1 ATTAAAATTTAAAAT
9400682 -TTAAAATTTAAAAT
1 ATTAAAATTTAAAAT
9400696 TACTTAAAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
14 14 0.38
15 15 0.41
16 8 0.22
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATTAAAATTTAAAAT
Found at i:9400684 original size:7 final size:7
Alignment explanation
Indices: 9400630--9400696 Score: 64
Period size: 7 Copynumber: 9.3 Consensus size: 7
9400620 AGATTTATTT
9400630 TTTAAAA
1 TTTAAAA
*
9400637 -TTATAA
1 TTTAAAA
9400643 TTTCAAAA
1 TTT-AAAA
**
9400651 TAAAAAA
1 TTTAAAA
9400658 TTTATAAA
1 TTTA-AAA
*
9400666 TATTAAAT
1 T-TTAAAA
9400674 TTTAAAA
1 TTTAAAA
9400681 TTTAAAA
1 TTTAAAA
9400688 TTTAAAA
1 TTTAAAA
9400695 TT
1 TT
9400697 ACTTAAAGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
6 5 0.10
7 29 0.60
8 11 0.23
9 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTAAAA
Found at i:9402101 original size:61 final size:62
Alignment explanation
Indices: 9401971--9402218 Score: 457
Period size: 62 Copynumber: 4.0 Consensus size: 62
9401961 TATATTTGTA
*
9401971 GATATCTTATGTTATTTGAAATTTAAATTTTTTT-AAAATTTTAAGTTTCAAAATGTTTTTT
1 GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
9402032 -ATATCTTATTTTATTTGAAATTTAAATTTTTTT-AAAATTTTAAGTTTCAAAATGTTTTTT
1 GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
9402092 GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
1 GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
*
9402154 GATATCTTATTTTATTTGAAATTTAATTTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
1 GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
9402216 GAT
1 GAT
9402219 TTTGGATTGC
Statistics
Matches: 183, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
60 59 0.32
61 33 0.18
62 91 0.50
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (62 bp):
GATATCTTATTTTATTTGAAATTTAAATTTTTTTAAAAATTTTAAGTTTCAAAATGTTTTTT
Found at i:9402292 original size:7 final size:8
Alignment explanation
Indices: 9402276--9402300 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9402266 TCTAATTCTC
9402276 TTTTATTT
1 TTTTATTT
9402284 TTTTATTT
1 TTTTATTT
9402292 TTTTATTT
1 TTTTATTT
9402300 T
1 T
9402301 CTAAAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:9403458 original size:20 final size:21
Alignment explanation
Indices: 9403419--9403470 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
9403409 AATAATAATA
*
9403419 ATAATA-ATAATAATGTAAAT
1 ATAATATATAATCATGTAAAT
9403439 ATAATATATAATCATG-AAAT
1 ATAATATATAATCATGTAAAT
*
9403459 -CAA-ATATAATCA
1 ATAATATATAATCA
9403471 CACATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 9 0.31
19 2 0.07
20 10 0.34
21 8 0.28
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.33
Consensus pattern (21 bp):
ATAATATATAATCATGTAAAT
Found at i:9403740 original size:84 final size:87
Alignment explanation
Indices: 9403594--9403757 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 87
9403584 ATCATTGAAT
*
9403594 AATAAATAAATAACTATGCAAATAAATATATTAATAATCATACAATCACACAAATAAATAAAT-T
1 AATAAATAAATAACTATGCAAATAAATATATTAATAATCATACAATCAAACAAATAAATAAATAT
9403658 AATAATCATGCAAATAGACATGC
66 -ATAATCATGCAAATAGACATGC
* * * * * *
9403681 AATAAATATATAATTATGC-AATTAATA-ATGT-A-AATCATGCAATTAAACAAATAATTAAATA
1 AATAAATAAATAACTATGCAAATAAATATAT-TAATAATCATACAATCAAACAAATAAATAAATA
9403742 TATAATCATGCAAATA
65 TATAATCATGCAAATA
9403758 AAAATATATA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
84 39 0.57
85 4 0.06
86 8 0.12
87 17 0.25
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.29
Consensus pattern (87 bp):
AATAAATAAATAACTATGCAAATAAATATATTAATAATCATACAATCAAACAAATAAATAAATAT
ATAATCATGCAAATAGACATGC
Found at i:9403753 original size:32 final size:31
Alignment explanation
Indices: 9403713--9403809 Score: 93
Period size: 32 Copynumber: 3.3 Consensus size: 31
9403703 TAATAATGTA
*
9403713 AATCATGCAATTAAACAAATAATTAAATATAT
1 AATCATGCAA-TAAATAAATAATTAAATATAT
9403745 AATCATGC---AAATAAA-AA-T--ATATA-
1 AATCATGCAATAAATAAATAATTAAATATAT
**
9403768 AATCATGCAAATAAATATGTAATTAAATATAT
1 AATCATGC-AATAAATAAATAATTAAATATAT
9403800 AATCATGCAA
1 AATCATGCAA
9403810 CTGATAATAC
Statistics
Matches: 53, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
23 8 0.15
24 5 0.09
26 1 0.02
27 7 0.13
28 8 0.15
29 1 0.02
31 7 0.13
32 16 0.30
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (31 bp):
AATCATGCAATAAATAAATAATTAAATATAT
Found at i:9403765 original size:22 final size:23
Alignment explanation
Indices: 9403728--9403782 Score: 85
Period size: 23 Copynumber: 2.3 Consensus size: 23
9403718 TGCAATTAAA
9403728 CAAATAATTAAATATAT-AATCATG
1 CAAATAA--AAATATATAAATCATG
9403752 CAAATAAAAATATATAAATCATG
1 CAAATAAAAATATATAAATCATG
9403775 CAAATAAA
1 CAAATAAA
9403783 TATGTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.27
23 15 0.50
24 7 0.23
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.27
Consensus pattern (23 bp):
CAAATAAAAATATATAAATCATG
Found at i:9403777 original size:55 final size:55
Alignment explanation
Indices: 9403683--9403919 Score: 232
Period size: 55 Copynumber: 4.4 Consensus size: 55
9403673 AGACATGCAA
* * * * *
9403683 TAAATATATAATTATGC-AATTAATA-ATGTAAATCATGCAATTAAACAAATAAT
1 TAAATATATAATCATGCAAATAAAAATATATAAATCATGCAATTAAATAAATAAT
* **
9403736 TAAATATATAATCATGCAAATAAAAATATATAAATCATGCAAATAAATATGTAAT
1 TAAATATATAATCATGCAAATAAAAATATATAAATCATGCAATTAAATAAATAAT
* * * * * ***
9403791 TAAATATATAATCATGCAACTGATAATACATAAATCATACTAA-TAAATATGCAAT
1 TAAATATATAATCATGCAAATAAAAATATATAAATCATGC-AATTAAATAAATAAT
* * * *
9403846 TAAATATATAATCATGCAAATAATAGTATATAAATCATGCAATCATATAAATAA-
1 TAAATATATAATCATGCAAATAAAAATATATAAATCATGCAATTAAATAAATAAT
*
9403900 T-AATATATAAATTATGCAAA
1 TAAATATAT-AATCATGCAAA
9403920 ATATGCAATT
Statistics
Matches: 154, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
53 23 0.15
54 19 0.12
55 110 0.71
56 2 0.01
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (55 bp):
TAAATATATAATCATGCAAATAAAAATATATAAATCATGCAATTAAATAAATAAT
Found at i:9403862 original size:20 final size:23
Alignment explanation
Indices: 9403833--9403888 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 23
9403823 AATCATACTA
9403833 ATAAAT-ATGCAATTAA-A-TAT
1 ATAAATCATGCAATTAATAGTAT
*
9403853 AT-AATCATGCAAATAATAGTAT
1 ATAAATCATGCAATTAATAGTAT
9403875 ATAAATCATGCAAT
1 ATAAATCATGCAAT
9403889 CATATAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 3 0.10
20 11 0.37
21 1 0.03
22 5 0.17
23 10 0.33
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAATCATGCAATTAATAGTAT
Found at i:9403895 original size:17 final size:16
Alignment explanation
Indices: 9403872--9403923 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 16
9403862 CAAATAATAG
*
9403872 TATATAAATCATGCAA
1 TATATAAATAATGCAA
9403888 TCATATAAATAAT--AA
1 T-ATATAAATAATGCAA
*
9403903 TATATAAATTATGCAA
1 TATATAAATAATGCAA
*
9403919 AATAT
1 TATAT
9403924 GCAATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 10 0.33
15 3 0.10
16 7 0.23
17 10 0.33
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (16 bp):
TATATAAATAATGCAA
Found at i:9403909 original size:14 final size:14
Alignment explanation
Indices: 9403863--9403911 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
9403853 ATAATCATGC
*
9403863 AAATAATAGTATAT
1 AAATAATAATATAT
*
9403877 AAATCATGCAATCATAT
1 AAATAAT--AAT-ATAT
9403894 AAATAATAATATAT
1 AAATAATAATATAT
9403908 AAAT
1 AAAT
9403912 TATGCAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 14 0.48
15 3 0.10
16 2 0.07
17 10 0.34
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:9404515 original size:15 final size:16
Alignment explanation
Indices: 9404495--9404534 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
9404485 AAAGTTAAAC
*
9404495 AAAAAATTAAACTA-A
1 AAAAAATTAAAATATA
9404510 AAAAAATTAAAATATA
1 AAAAAATTAAAATATA
9404526 AATAAAATT
1 AA-AAAATT
9404535 TATGGCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.59
16 3 0.14
17 6 0.27
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAAAATTAAAATATA
Found at i:9404872 original size:39 final size:38
Alignment explanation
Indices: 9404829--9404937 Score: 114
Period size: 37 Copynumber: 2.9 Consensus size: 38
9404819 TTGAAACTTT
* ** * *
9404829 AAATAAAAGTACTCATTTATCGGGGCTTCAATTTTGAGA
1 AAATAAAAGAACTCATCCATCGAGGCTTCAACTTTGA-A
*
9404868 AAAT-AAAGAACTCCTCCATCGAGGCTTCAACTTTGAA
1 AAATAAAAGAACTCATCCATCGAGGCTTCAACTTTGAA
* * *
9404905 AAAT-AAAGAATTCCTCTATCGAGGCTTCAACTT
1 AAATAAAAGAACTCATCCATCGAGGCTTCAACTT
9404938 AGAACTTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 32 0.52
38 26 0.42
39 4 0.06
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (38 bp):
AAATAAAAGAACTCATCCATCGAGGCTTCAACTTTGAA
Found at i:9404920 original size:37 final size:38
Alignment explanation
Indices: 9404847--9404937 Score: 139
Period size: 37 Copynumber: 2.4 Consensus size: 38
9404837 GTACTCATTT
* *
9404847 ATCGGGGCTTCAATTTTGAGAAAATAAAGAACTCCTCC
1 ATCGAGGCTTCAACTTTGAGAAAATAAAGAACTCCTCC
* *
9404885 ATCGAGGCTTCAACTTTGA-AAAATAAAGAATTCCTCT
1 ATCGAGGCTTCAACTTTGAGAAAATAAAGAACTCCTCC
9404922 ATCGAGGCTTCAACTT
1 ATCGAGGCTTCAACTT
9404938 AGAACTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 32 0.65
38 17 0.35
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (38 bp):
ATCGAGGCTTCAACTTTGAGAAAATAAAGAACTCCTCC
Found at i:9404994 original size:43 final size:43
Alignment explanation
Indices: 9404940--9405086 Score: 190
Period size: 43 Copynumber: 3.4 Consensus size: 43
9404930 TTCAACTTAG
* * * *
9404940 AACTTTTAAAAAATAAAATGCTCTCCCACAACTGAGGTTTTGT
1 AACTTTGAAAAAATAAAATGCTCTCCCACAACTAAGGCTTTGA
* * *
9404983 AACTTTGAAAAAATAAAATACTCCCCCATAACTAAGGCTTTGA
1 AACTTTGAAAAAATAAAATGCTCTCCCACAACTAAGGCTTTGA
*
9405026 AACTTTG-AAAAATAAAATGCTCAT-CCACAACTAAGGCTTTAA
1 AACTTTGAAAAAATAAAATGCTC-TCCCACAACTAAGGCTTTGA
*
9405068 AACTTTTAAAAAATAAAAT
1 AACTTTGAAAAAATAAAAT
9405087 AAGATCATTC
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 36 0.40
43 54 0.60
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.29
Consensus pattern (43 bp):
AACTTTGAAAAAATAAAATGCTCTCCCACAACTAAGGCTTTGA
Found at i:9406560 original size:23 final size:22
Alignment explanation
Indices: 9406529--9406572 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9406519 TCAGTTTAAG
9406529 TTTTTTTTTTCATTCTTTTTGT
1 TTTTTTTTTTCATTCTTTTTGT
* *
9406551 TTTTTGTTTTTTATTTTTTTTG
1 TTTTT-TTTTTCATTCTTTTTG
9406573 ACACATCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.84
Consensus pattern (22 bp):
TTTTTTTTTTCATTCTTTTTGT
Found at i:9409589 original size:21 final size:19
Alignment explanation
Indices: 9409551--9409600 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
9409541 GGTGCCAATC
9409551 GATCCCTTTTTAAGTGATT
1 GATCCCTTTTTAAGTGATT
*
9409570 GATCCCTTAGTTTGAGTGATT
1 GATCCCTT--TTTAAGTGATT
* *
9409591 AATCCATTTT
1 GATCCCTTTT
9409601 CAAATCTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
21 16 0.62
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (19 bp):
GATCCCTTTTTAAGTGATT
Done.