Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 45 of 84
Found at i:10504756 original size:20 final size:21
Alignment explanation
Indices: 10504655--10504777 Score: 88
Period size: 22 Copynumber: 5.8 Consensus size: 21
10504645 ATTTACTCAA
* *
10504655 AAGTTATCAATTATTTACTACT
1 AAGTTATCAATGA-TTACTATT
* * *
10504677 AAATTATCATTTATTTACTATT
1 AAGTTATCAATGA-TTACTATT
* * * *
10504699 AAGTTACCATTAATTTACTACT
1 AAGTTATCAATGA-TTACTATT
10504721 AAGTTATCAATGATTACTATT
1 AAGTTATCAATGATTACTATT
*
10504742 AAGTTAT-ACTGATTAC-ATTT
1 AAGTTATCAATGATTACTA-TT
* *
10504762 AAGTTTTCAATAATTA
1 AAGTTATCAATGATTA
10504778 TAATTACTAA
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
19 1 0.01
20 16 0.19
21 20 0.24
22 47 0.56
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (21 bp):
AAGTTATCAATGATTACTATT
Found at i:10507214 original size:17 final size:17
Alignment explanation
Indices: 10507176--10507214 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10507166 TTTTATTTGG
*
10507176 AAAATTTTTATTAAACG
1 AAAATTTTTATTAAACA
* *
10507193 TAAATTTTTATTAAATA
1 AAAATTTTTATTAAACA
10507210 AAAAT
1 AAAAT
10507215 ACTAAAATAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (17 bp):
AAAATTTTTATTAAACA
Found at i:10508490 original size:24 final size:24
Alignment explanation
Indices: 10508463--10508533 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
10508453 TAAAAAATTC
*
10508463 ATTTAAATTAAAATTTATAAGAAT
1 ATTTAAATTAAAATTTATAAAAAT
** * *
10508487 ATTTAATACGAATATTTTTAAAAAT
1 ATTTAA-ATTAAAATTTATAAAAAT
*
10508512 -TTTAGAATTAAAATTTTTAAAA
1 ATTTA-AATTAAAATTTATAAAA
10508534 TTTTCAATAG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 23 0.62
25 14 0.38
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (24 bp):
ATTTAAATTAAAATTTATAAAAAT
Found at i:10517728 original size:16 final size:18
Alignment explanation
Indices: 10517688--10517729 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10517678 AGCTGTTTCA
*
10517688 TGATTCTCATTTCTTTTT
1 TGATTTTCATTTCTTTTT
*
10517706 TGCTTTTCATTT-TTTTT
1 TGATTTTCATTTCTTTTT
10517723 T-ATTTTC
1 TGATTTTC
10517730 TAAAGTGCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 5 0.24
17 6 0.29
18 10 0.48
ACGTcount: A:0.10, C:0.14, G:0.05, T:0.71
Consensus pattern (18 bp):
TGATTTTCATTTCTTTTT
Found at i:10518697 original size:721 final size:712
Alignment explanation
Indices: 10517022--10519050 Score: 1942
Period size: 721 Copynumber: 2.8 Consensus size: 712
10517012 TCATTGAGAA
*
10517022 TGCCACATGG-TTGTTCATAGTTCTCCTTTCTTCTTTT-TATTTTTTTTA------AAAAATATT
1 TGCCACATGGCTT-TTCATGGTTCTCCTTTCTT-TTTTCTATTTTTTTTATTTTCTAAAAATATT
* * * * * *
10517079 TGAGAAAAAGAGATGGGTAATTGTTCTTTTATTCAACTGAACTGAGGACGAGAGAGAAGTTGGTG
64 TGAGAAAAAGAGATAGGTAGTTGTTCTTTGATTTAACTGAAGTGAGGA-TA-AGAGAAGTTGGTG
* * * * ** * * *
10517144 TAAGGTTTGGACAGTAAATCTATATTTATAAAATTATCCCCGTAGCTTTTTTAACATTGA-TTGG
127 AAAGGTTTAGATAGTAAATCTATATTGATAAAATTATCCTTGTAACCTTTTGAACATTGATTTGG
* * * * *
10517208 GCACAAATATGGTTGATGATTGCAATTCTATGTTTTTTTTTAAATTCTTTTTATTA-AAAAAACA
192 ACACAAACATGGTGGATGATTGCAATTCTATG--TTTTTTT-AATT-TTTTTTTTATTAAAAA-A
* * * * *
10517272 TAATGCTTTTGTTTTTTTAAAACGTAGTGAATCATTT-AGCCCATATTTTGCTTAGTTTGATTTG
252 TAATGTTTTTG-TTTTTTAAAACATAGTGGATCATTTGA-CTCATATTTTGCTGAGTTTGATTTG
* * * ** * *
10517336 CCACATGG-----T-CGATATAAATGTTTTCATATAAACCACATTATACTGTGGGGTAATGTAAT
315 ACACATGGTATCTTCCAATATAAATGTTTTCATATCAACCAGTTTATACTGT-GGGTAATATAGT
* * ** * *
10517395 GATTGATGTAATTTAAAAAAAATATATATTTTTAATACTTAAAAGTGTAGCATTAGGATACAAAT
379 GATTGATGTAATTTTAAAAAAATA-ATA-TTTTGATACTTAAAAGTGTAG--TTTTGATTCAAAA
* * *
10517460 ACCACGTTTATTATTTCAAAAACATCTTTGATGATTTTACAAGATCACGTCTTTTTGTTTTGACA
440 ACCACGTTTATTAATTCAAAAACATCTTTGATGATTTTACAAGATCACGTCTTTTTGTTTTCAAA
* * *
10517525 CGTGATTGATGATGAATAAAAAATGCTCTACATAAGAATTCTTTTTACTTTGTTTCCTATGTTGG
505 CATGATTGATGATGAATAAAAAATGCTATACATAAGAATTCTTTTTACTTTGTTTCCTATGTTAG
** * * * *
10517590 AAATGTGGTGCTCAAAGAATAAATATCACGTTTCTTGAATCTTTTATGAATGTGTGAAGCACAGG
570 AAACATGGTGCTCAAAGAATAAATACCACATTTCTTGAATCTTTTATGAATGTATGAAGCACAAG
* * * * * *
10517655 ACTTTTCATTGAGAGTGCAACGTAGCTGTTTCATGATTCTCATTTCTTTTTTGCTTTTCATTTTT
635 ACTCTTCATTGAGAATGCAACATAGCTATTTCATGATTCTCATTCCTTTTTTGCTTTTCA--TGT
10517720 TTTTATTTTCTAAAG
698 TTTTATTTTCTAAAG
* * * *
10517735 TGCCACGTGGCTTTTCATGGTTCTCTTTTCTTTTTTGCTTTTTTTTTTATTTTTTAAAAATATTT
1 TGCCACATGGCTTTTCATGGTTCTCCTTTCTTTTTT-CTATTTTTTTTATTTTCTAAAAATATTT
* * * *
10517800 GAGAAAAAGAGATAGGTAGTTGTTCCTTGATTTAATTTAAGTGAGGATGAGA-AAGGGGTTGGTG
65 GAGAAAAAGAGATAGGTAGTTGTTCTTTGATTTAACTGAAGTGAGGATAAGAGAA---GTTGGTG
** * * * * * *
10517864 GCAGGTTTAGGT-GTTAAATTTATATTGATAAAGTTATCCTTGTAATCTTTTGAACACTAATTT-
127 AAAGGTTTAGATAG-TAAATCTATATTGATAAAATTATCCTTGTAACCTTTTGAACATTGATTTG
* * * *
10517927 GAGCACAAACATAGCGGATGATTGCAATTATATGTTCTTTTAA---TTTTTTTATTACAAAAATA
191 GA-CACAAACATGGTGGATGATTGCAATTCTATGTTTTTTTAATTTTTTTTTTATTA-AAAAATA
* * *
10517989 ATGTTTTTGTTTTCTAAAACATAGTGGATCATTTGACTTATATTTTGCTGAGTTTGATTTGTCAC
254 ATGTTTTTGTTTTTTAAAACATAGTGGATCATTTGACTCATATTTTGCTGAGTTTGATTTGACAC
* * * * *
10518054 ATGGTAATCTTCCAATATAGATGTTTTCATAGCAACTATGTTTATACTGTGGATAACATAGTGAT
319 ATGGT-ATCTTCCAATATAAATGTTTTCATATCAACCA-GTTTATACTGTGGGTAATATAGTGAT
*
10518119 TGATATAATTTTAAAAAAATAAATACTTTTGATACTTAAAAGTGTAGTGTTTCGATTCAAAAACC
382 TGATGTAATTTTAAAAAAAT-AATA-TTTTGATACTTAAAAGTGTAGT-TTT-GATTCAAAAACC
* ** * * *
10518184 ACATTTATTAATTCAAAAATGT-TTTTAGTGATTTTATAAGATCACGTCTTTTTG-TTTCAAATT
443 ACGTTTATTAATTCAAAAACATCTTTGA-TGATTTTACAAGATCACGTCTTTTTGTTTTCAAA-C
* * *
10518247 ATGGTTGATGATGAATAAAAAA-GTTTATATATAAGAATTCTTTTTACTTTGTTTCCTATGTTAG
506 ATGATTGATGATGAATAAAAAATG-CTATACATAAGAATTCTTTTTACTTTGTTTCCTATGTTAG
* * * *
10518311 AAACATGGTGTTCAAAGAATCAATGCCATATTTCTTGAATCTTTTATGAATGTATGGAA-CACAA
570 AAACATGGTGCTCAAAGAATAAATACCACATTTCTTGAATCTTTTATGAATGTAT-GAAGCACAA
* ** * *
10518375 GACTCTTCATT-AGAAATGCCACATAGCTATTTTGTGGCTTTTC-TTCCTTTTTTGCTTTT-A-G
634 GACTCTTCATTGAG-AATGCAACATAGCTATTTCAT-GATTCTCATTCCTTTTTTGCTTTTCATG
10518436 TTTTT-TTTTCTAAAG
697 TTTTTATTTTCTAAAG
* *
10518451 TGCTACATGGCTATTTCATGGTTTTCCTTTC-TTTTT-TATTTTTTTTATTTTCTAAAAATATTT
1 TGCCACATGGCT-TTTCATGGTTCTCCTTTCTTTTTTCTATTTTTTTTATTTTCTAAAAATATTT
* * * **
10518514 GAGAAAAAAAGAAAGGTAGTTCTTCTTTGATTTAACTGAAGTGAGGATAAGAGAACGATTAATGA
65 GAGAAAAAGAGATAGGTAGTTGTTCTTTGATTTAACTGAAGTGAGGATAAGAGAA-G-TTGGTGA
* *
10518579 AAGGTTTATATAGTAAATCTATATTGATAAAATTGTCCTTGTAACCTTTTGAACATTGATTTGGA
128 AAGGTTTAGATAGTAAATCTATATTGATAAAATTATCCTTGTAACCTTTTGAACATTGATTTGGA
* * * * ** *
10518644 AACAAACATGGTGGATGGTTGCAATTCTATATTTTTTTAATTCTTTTTTTTTTTGAAAATGTAAC
193 CACAAACATGGTGGATGATTGCAATTCTATGTTTTTTTAATT-TTTTTTTTATT-AAAAAATAAT
* ** **
10518709 ATTTTTGTTTTTTAAAACATAGTGGATCATTTGACTCATGCTTTGCTGAGTTTGATTTGACATGT
256 GTTTTTGTTTTTTAAAACATAGTGGATCATTTGACTCATATTTTGCTGAGTTTGATTTGACACAT
* * *
10518774 GGTAGTCTCCCAATATAAATGTTTTCATATCAACCACGTTTATAATGTGGGTAATATAGTAATTG
321 GGTA-TCTTCCAATATAAATGTTTTCATATCAACCA-GTTTATACTGTGGGTAATATAGTGATTG
** * * *
10518839 ATGTAATTTTTGCAAAAAT-AT-TTATGATACTTAAAAGTGTAGCTTTTGGTTACAAACACCACG
384 ATGTAA-TTTTAAAAAAATAATATTTTGATACTTAAAAGTGTAG-TTTTGATT-CAAAAACCACG
** * * * * ** * *
10518902 TTTATTAATTTGACAACATCTTTAAAGATTTATCCAAGGCCATGTCTTTTTGTTTT-GAA-ATGT
446 TTTATTAATTCAAAAACATCTTTGATGATTT-TACAAGATCACGTCTTTTTGTTTTCAAACATG-
* * * * * * **
10518965 AGTCGATAATGAATAAAAAA-ACTAGATATAAGAATTGTTTTTA-TCCGTTTCCTATGTTAGAAA
509 A-TTGATGATGAATAAAAAATGCTATACATAAGAATTCTTTTTACTTTGTTTCCTATGTTAGAAA
* * *
10519028 CATGATGTTCAAATAATAAATAC
573 CATGGTGCTCAAAGAATAAATAC
10519051 TATGTTTCTT
Statistics
Matches: 1073, Mismatches: 189, Indels: 107
0.78 0.14 0.08
Matches are distributed among these distances:
712 4 0.00
713 27 0.03
714 271 0.25
715 88 0.08
716 67 0.06
717 29 0.03
718 136 0.13
719 19 0.02
720 114 0.11
721 300 0.28
722 18 0.02
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (712 bp):
TGCCACATGGCTTTTCATGGTTCTCCTTTCTTTTTTCTATTTTTTTTATTTTCTAAAAATATTTG
AGAAAAAGAGATAGGTAGTTGTTCTTTGATTTAACTGAAGTGAGGATAAGAGAAGTTGGTGAAAG
GTTTAGATAGTAAATCTATATTGATAAAATTATCCTTGTAACCTTTTGAACATTGATTTGGACAC
AAACATGGTGGATGATTGCAATTCTATGTTTTTTTAATTTTTTTTTTATTAAAAAATAATGTTTT
TGTTTTTTAAAACATAGTGGATCATTTGACTCATATTTTGCTGAGTTTGATTTGACACATGGTAT
CTTCCAATATAAATGTTTTCATATCAACCAGTTTATACTGTGGGTAATATAGTGATTGATGTAAT
TTTAAAAAAATAATATTTTGATACTTAAAAGTGTAGTTTTGATTCAAAAACCACGTTTATTAATT
CAAAAACATCTTTGATGATTTTACAAGATCACGTCTTTTTGTTTTCAAACATGATTGATGATGAA
TAAAAAATGCTATACATAAGAATTCTTTTTACTTTGTTTCCTATGTTAGAAACATGGTGCTCAAA
GAATAAATACCACATTTCTTGAATCTTTTATGAATGTATGAAGCACAAGACTCTTCATTGAGAAT
GCAACATAGCTATTTCATGATTCTCATTCCTTTTTTGCTTTTCATGTTTTTATTTTCTAAAG
Found at i:10521441 original size:3 final size:3
Alignment explanation
Indices: 10521433--10521470 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
10521423 TCTATTTTTG
10521433 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CTAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
10521471 TTTGCCTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10525255 original size:21 final size:22
Alignment explanation
Indices: 10525229--10525270 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
10525219 ATAACTCTTT
10525229 TTAATG-AAACTGTTGATTTAA
1 TTAATGAAAACTGTTGATTTAA
*
10525250 TTAATGCAAAAGTGTTGATTT
1 TTAATG-AAAACTGTTGATTT
10525271 GATTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
23 12 0.67
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.43
Consensus pattern (22 bp):
TTAATGAAAACTGTTGATTTAA
Found at i:10531984 original size:18 final size:20
Alignment explanation
Indices: 10531961--10532000 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
10531951 GTTATACTTT
10531961 TTTTGAGC-C-TTTATTTTC
1 TTTTGAGCTCTTTTATTTTC
10531979 TTTTGAGCTTCTTTTATTTTC
1 TTTTGAGC-TCTTTTATTTTC
10532000 T
1 T
10532001 ATTACTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
20 1 0.05
21 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.10, T:0.65
Consensus pattern (20 bp):
TTTTGAGCTCTTTTATTTTC
Found at i:10534275 original size:390 final size:390
Alignment explanation
Indices: 10533187--10535404 Score: 2236
Period size: 390 Copynumber: 5.7 Consensus size: 390
10533177 ACTTAAAATA
* * * * ***
10533187 TTTTATTTAAATAAAATATCTTTATGCTTTAAAAAACATAAACTTTGG---AATTTTTTCCCATA
1 TTTTATTTAAATAAAATAT-GTTATGCCTTAAAAAACGTAAA-ATTGGAAAAAAAATTTCCCA-A
* ** *
10533249 TT-AAAACTATGTTTTCTACTTAAAAATTTTATTATTTACATTTTTAATTAAAT-ACCTCATTTT
63 TTCAAAACTACG-TTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACC-CATTTG
* * * ** * *
10533312 CACTTTCAAAAATATAGTGTTTGTGAATTTTTTTCGATCAAATACTCTGTTTATACTTTTAT-AT
126 CACTTTCAAAAATGTAGTGTTTGT-AAATTTTTTCAATCAAATACTCCATTTATACTATTATAAA
* ** * * * * *
10533376 GGTCATTATTATTTTTTATTTATCTTTTGC--TATTTAAACAAACC-CTAAA-TTATTGTTTCCG
190 CGTGGTGATTATTTTTTA-TTAT-TTTT-CATTGTTTAAACAAACCTATAAACTTATTGTCTCCA
* * * **
10533437 TTGATAAAAATAAGGTTTTTGCTTTTGAGATTTTTATTTTTGTTTCTTAAGTGGTTTACAAATAC
252 TTCATAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATAC
* * * * * *
10533502 CGTATTCCCAAAAATAAATTTAGAAATATCACTTAAGTACT-TATTTCTCATATAGAAAATGTAA
317 CATATTCCCAAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGGAAAACGTAA
10533566 TGTTTAAATTTT
382 TGTTT-AA--TT
* * * *** * ****
10533578 TTTTATTTGAACAAAATATGATTATGCTTTAAAAAGTATAAAATTTGGAAGACTTTTTTCCCAAT
1 TTTTATTTAAATAAAATATG-TTATGCCTTAAAAAACGTAAAA-TTGGAAAAAAAATTTCCCAAT
* ** ** *
10533643 TCAAAACTACGTTTCTCCTTAAAAATCACATTAGTTTTATTTTTTTAATTAAATACCCCATTTGC
64 TCAAAACTACGTTTCTACTTAAAAATCGTATTA--TTTACATTTTTAATTAAATAACCCATTTGC
* * * *
10533708 ACTTTCAAAAATGTAGTGTTTGT-AATTTTTTCAATCAAATGCTTCGTTTATACTATCATAAACG
127 ACTTTCAAAAATGTAGTGTTTGTAAATTTTTTCAATCAAATACTCCATTTATACTATTATAAACG
* * **
10533772 TGGTGATTATCATTGATTTATTTATTTTTCATTGTTTAACCAAACCCTATAAACTTGTTGTCTTT
192 TGGTGATTAT--TT--TTTA-TTATTTTTCATTGTTTAAACAAA-CCTATAAACTTATTGTCTCC
*
10533837 ATTCATAAAAATAAGG-TTTTGCTTTTAAGTTTTTTATTTTTCTTTCTTAAGTGGTTTACTGATA
251 ATTCATAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATA
* * * * * *
10533901 CCACATTCCCAAAAATAAATTTATAAACATCACTTAAATACTCCATTTATGATATGGAAAACGTA
316 CCATATTCCCAAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGGAAAACGTA
*
10533966 GTGTTTAATT
381 ATGTTTAATT
* *
10533976 TTTTATTTAAATTAAATATGTATATGCCTTAAAAAACGTAAAATCTGGAAAAAAAAATTTCCCGA
1 TTTTATTTAAATAAAATATGT-TATGCCTTAAAAAACGTAAAAT-TGG-AAAAAAAATTTCCCAA
* *
10534041 TTCAAAACTACGTTTCTACTTAAAAATCGTATTATTTATATTTTTAATTAAATAACCCGTTTGCA
63 TTCAAAACTACGTTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACCCATTTGCA
* * *
10534106 CTTTAAAAAATGTAATGTTTGT-AA-TTTTT-AATCAAATACTCCATTTATACGATTATAAACGT
128 CTTTCAAAAATGTAGTGTTTGTAAATTTTTTCAATCAAATACTCCATTTATACTATTATAAACGT
* * *
10534168 GGTGATT-TTTTTAATATATTTTTTATTGTTTAAACAAACCTTATAAACTTATTGTCTCTATTCA
193 GGTGATTATTTTTTAT-TATTTTTCATTGTTTAAACAAACC-TATAAACTTATTGTCTCCATTCA
* * * *
10534232 TAAAAATAAAG-TTTTGCTTTTAAGTTTTTTCTTTTTGTTTCTTACGTAGTTTACTGATACCATA
256 TAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCATA
*** * *
10534296 TTCTTGAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGAAAAACTTAATGTT
321 TTCCCAAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGGAAAACGTAATGTT
*
10534361 TATTTT
386 TA-ATT
* * * *
10534367 TTTTATTTAAATAAAATATGCTTATG-CTTTAAAAACGTAAAATTTGAAAAAAAAAATT-CTAAT
1 TTTTATTTAAATAAAATATG-TTATGCCTTAAAAAACGTAAAA-TTGGAAAAAAAATTTCCCAAT
* * * * * ** *
10534430 TAAAAACTATGTTTCTATTTAAAAATCGTATTATTTGCATTTTTAGTTAAATAACCTGTTTTCAC
64 TCAAAACTACGTTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACCCATTTGCAC
* * * ** * * *
10534495 TTT-AAAAATATAGTGTTTTTAATATTTTTTCAATTAAATACTTGATTTAGAAT-TTCATAAATG
129 TTTCAAAAATGTAGTGTTTGTAA-ATTTTTTCAATCAAATACTCCATTTATACTATT-ATAAACG
*
10534558 TGGTG---ATTTTTT-TT-TTTTACATTGTTTAAACAAACCCTATAAACTTATTGTCTCCATTCA
192 TGGTGATTATTTTTTATTATTTTTCATTGTTTAAACAAA-CCTATAAACTTATTGTCTCCATTCA
* * * *
10534618 TAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGCTTACTCATGCCGTA
256 TAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCATA
* * * * *
10534683 TTCCCAAAAATAAATTTATAAACATCGCTTAAATACTCTATTTCTAATATGGAAAACATAATGTT
321 TTCCCAAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGGAAAACGTAATGTT
10534748 TAATTTT
386 TAA--TT
* * * ** *
10534755 TTTTATTTAAATTAAATATGTTTATGCTTTAAACATTGTAAAATTTGGAAAAAAATTTTCCCAAT
1 TTTTATTTAAATAAAATATG-TTATGCCTTAAAAAACGTAAAA-TTGGAAAAAAAATTTCCCAAT
* *
10534820 TCAAAACTACGTTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAAT-ACCTCGTTTGCA
64 TCAAAACTACGTTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACC-CATTTGCA
* * ** *
10534884 CTTTCAAAAATGTAATTTTTGT-AA-TTTTT-AATCAAATACTCTGTTTATACTATTATAAACAT
128 CTTTCAAAAATGTAGTGTTTGTAAATTTTTTCAATCAAATACTCCATTTATACTATTATAAACGT
* *
10534946 GGTGATTATTTTTTATATATTTTTCATTATTTAAACAAACCTTATAAACTTATTGTCTCTATTCA
193 GGTGATTATTTTTTAT-TATTTTTCATTGTTTAAACAAACC-TATAAACTTATTGTCTCCATTCA
* *
10535011 TAAAAATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCGTAAGTGGTTTA-TCGATACCAT
256 TAAAAATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACT-GATACCAT
** * * * * *
10535075 ATTCTTAAAAATAAATTTACAAATATTACTTAAATACTTTTGTTTCTTATAT-GAAGAACTTAGT
320 ATTCCCAAAAATAAATTTACAAATATCACTTAAATAC-TCTATTTCTTATATGGAA-AACGTAAT
*
10535139 GTTTATTT
383 GTTTAATT
* * *
10535147 TTTTATTTAAATAAAATATGCTTATG-CTTTAAAAACGTATAATTTGAAAAAAAA-TT-CCAATT
1 TTTTATTTAAATAAAATATG-TTATGCCTTAAAAAACGTAAAATTGGAAAAAAAATTTCCCAATT
* * * * * * * *
10535209 GAAAACTATGTTTCTATTTAAAAATTGTATTATTTTCATTTTTAGTTAAATAATCCATTTTCACT
65 CAAAACTACGTTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACCCATTTGCACT
* * * *
10535274 TT-AAAAATGTAGTGTTTTTAATATTTTTTCAATTAAATACT-CAGTTTATAAT-TTCATAAATG
130 TTCAAAAATGTAGTGTTTGTAA-ATTTTTTCAATCAAATACTCCA-TTTATACTATT-ATAAACG
* * *
10535336 TGGTGACTA--TTTT-TT-TTTTACATTGTTTAAACAAACGCTATAAATTTATTGTCTCCATTCA
192 TGGTGATTATTTTTTATTATTTTTCATTGTTTAAACAAAC-CTATAAACTTATTGTCTCCATTCA
10535397 TAAAAATA
256 TAAAAATA
10535405 TAGTCTTTTC
Statistics
Matches: 1531, Mismatches: 235, Indels: 127
0.81 0.12 0.07
Matches are distributed among these distances:
386 98 0.06
387 163 0.11
388 160 0.10
389 56 0.04
390 267 0.17
391 147 0.10
392 33 0.02
393 180 0.12
394 51 0.03
395 80 0.05
396 10 0.01
397 56 0.04
398 58 0.04
399 43 0.03
400 86 0.06
401 43 0.03
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (390 bp):
TTTTATTTAAATAAAATATGTTATGCCTTAAAAAACGTAAAATTGGAAAAAAAATTTCCCAATTC
AAAACTACGTTTCTACTTAAAAATCGTATTATTTACATTTTTAATTAAATAACCCATTTGCACTT
TCAAAAATGTAGTGTTTGTAAATTTTTTCAATCAAATACTCCATTTATACTATTATAAACGTGGT
GATTATTTTTTATTATTTTTCATTGTTTAAACAAACCTATAAACTTATTGTCTCCATTCATAAAA
ATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCATATTCCC
AAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGGAAAACGTAATGTTTAATT
Found at i:10534933 original size:778 final size:773
Alignment explanation
Indices: 10533187--10535404 Score: 2786
Period size: 778 Copynumber: 2.8 Consensus size: 773
10533177 ACTTAAAATA
* * * * **
10533187 TTTTATTTAAATAAAATATCTTTATGCTTTAAAAAACATAAACTTTGG---AATTTTTTCCCATA
1 TTTTATTTAAATTAAATATGTTTATGCTTTAAAAAACGTAAAATTTGGAAAAAAATTTTCCCA-A
* ** * *
10533249 TT-AAAACTATGTTTTCTACTTAAAAATTTTATTATTTACATTTTTAATTAAATACCTCATTTTC
65 TTCAAAACTACG-TTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAATACCTCGTTTGC
* * * * **
10533313 ACTTTCAAAAATATAGTGTTTGTGAATTTTTTTCGATCAAATACTCTGTTTATACTTTTAT-ATG
129 ACTTTCAAAAATGTAATGTTTGT-AA--TTTTT-AATCAAATACTCTGTTTATACTATTATAAAC
** * * * ** * * **
10533377 GTCATTATTATTTTTTATTTATCTTTTGCTATTTAAACAAACC--CTAAA-TTATTGTTTCCGTT
190 GTGGTGATTATTTTTTATATATTTTTTATTATTTAAACAAACCTTATAAACTTATTGTCTCTATT
* * * * ** *
10533439 GATAAAAATAAGGTTTTTGCTTTTGAGATTTTTATTTTTGTTTCTTAAGTGGTTTACAAATACCG
255 CATAAAAATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCA
** * * *
10533504 TATTCCCAAAAATAAATTTAGAAATATCACTTAAGTACTTATTTCTCATAT-AGAAAA-TGTAAT
320 TATTCTTAAAAATAAATTTACAAATATCACTTAAATACTTATTTCTTATATGA-AAAACT-TAAT
* * * * *
10533567 GTTTAAATTTTTTTTATTTGAACAAAATATGATTATGCTTTAAAAA-GTATAAAATTTGGAAGAC
383 GTTT--ATTTTTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACG--TAAAATTT-GAAAAA
**** * * ** ** * *
10533631 TTTTTTCCCAATTCAAAACTACGTTTCTCCTTAAAAATCACATTAGTTTTATTTTTTTAATTAAA
443 AAAATT-CCAATTAAAAACTATGTTTCTATTTAAAAATCGTATTA-TTTCA--TTTTTAGTTAAA
* * * * *
10533696 TACCCCATTTGCACTTTCAAAAATGTAGTGTTTGT-A-ATTTTTTCAATCAAATGCTTCG-TTTA
504 TA-ACCATTTTCACTTT-AAAAATGTAGTGTTTTTAATATTTTTTCAATTAAATACTT-GATTTA
* * * * *
10533758 TACTATCATAAACGTGGTGATTATCATTGATTTATTTATTTTTCATTGTTTAACCAAACCCTATA
566 TAATTTCATAAATGTGGTG------ATT--TTT-TTT-TTTTACATTGTTTAAACAAACCCTATA
* **
10533823 AACTTGTTGTCTTTATTCATAAAAATAAGGTTTTGCTTTTAAGTTTTTTATTTTTCTTTCTTAAG
621 AACTTATTGTCTCCATTCATAAAAATAAGGTTTTGCTTTTAAGTTTTTTATTTTTCTTTCTTAAG
* * *
10533888 TGGTTTACTGATACCACATTCCCAAAAATAAATTTATAAACATCACTTAAATACTCCATTTATGA
686 TGGCTTACTCATACCACATTCCCAAAAATAAATTTATAAACATCACTTAAATACTCCATTTATAA
* *
10533953 TATGGAAAACGTAGTGTTTAATT
751 TATGGAAAACATAATGTTTAATT
* * * * *
10533976 TTTTATTTAAATTAAATATGTATATGCCTTAAAAAACGTAAAATCTGGAAAAAAAAATTTCCCGA
1 TTTTATTTAAATTAAATATGTTTATGCTTTAAAAAACGTAAAATTTGG-AAAAAAATTTTCCCAA
* *
10534041 TTCAAAACTACGTTTCTACTTAAAAATCGTATTATTTATATTTTTAATTAAATAACC-CGTTTGC
65 TTCAAAACTACGTTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAAT-ACCTCGTTTGC
* ** *
10534105 ACTTTAAAAAATGTAATGTTTGTAATTTTTAATCAAATACTCCATTTATACGATTATAAACGTGG
129 ACTTTCAAAAATGTAATGTTTGTAATTTTTAATCAAATACTCTGTTTATACTATTATAAACGTGG
* *
10534170 TGATT-TTTTTAATATATTTTTTATTGTTTAAACAAACCTTATAAACTTATTGTCTCTATTCATA
194 TGATTATTTTTTATATATTTTTTATTATTTAAACAAACCTTATAAACTTATTGTCTCTATTCATA
* * *
10534234 AAAATAAAG-TTTTGCTTTTAAGTTTTTTCTTTTTGTTTCTTACGTAGTTTACTGATACCATATT
259 AAAATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCATATT
*
10534298 CTTGAAAATAAATTTACAAATATCACTTAAATACTCTATTTCTTATATGAAAAACTTAATGTTTA
324 CTTAAAAATAAATTTACAAATATCACTTAAATACT-TATTTCTTATATGAAAAACTTAATGTTTA
*
10534363 TTTTTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACGTAAAATTTGAAAAAAAAAATTCTA
388 TTTTTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACGTAAAATTTG-AAAAAAAAATTCCA
*
10534428 ATTAAAAACTATGTTTCTATTTAAAAATCGTATTATTTGCATTTTTAGTTAAATAACCTGTTTTC
452 ATTAAAAACTATGTTTCTATTTAAAAATCGTATTATTT-CATTTTTAGTTAAATAACC-ATTTTC
* *
10534493 ACTTTAAAAATATAGTGTTTTTAATATTTTTTCAATTAAATACTTGATTTAGAATTTCATAAATG
515 ACTTTAAAAATGTAGTGTTTTTAATATTTTTTCAATTAAATACTTGATTTATAATTTCATAAATG
10534558 TGGTGATTTTTTTTTTTTACATTGTTTAAACAAACCCTATAAACTTATTGTCTCCATTCATAAAA
580 TGGTGATTTTTTTTTTTTACATTGTTTAAACAAACCCTATAAACTTATTGTCTCCATTCATAAAA
* * **
10534623 ATAAGGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGCTTACTCATGCCGTATTCCC
645 ATAAGG-TTTTGCTTTTAAGTTTTTTATTTTTCTTTCTTAAGTGGCTTACTCATACCACATTCCC
* * *
10534688 AAAAATAAATTTATAAACATCGCTTAAATACTCTATTTCTAATATGGAAAACATAATGTTTAATT
709 AAAAATAAATTTATAAACATCACTTAAATACTCCATTTATAATATGGAAAACATAATGTTTAA--
10534753 TT
772 TT
* **
10534755 TTTTATTTAAATTAAATATGTTTATGCTTTAAACATTGTAAAATTTGGAAAAAAATTTTCCCAAT
1 TTTTATTTAAATTAAATATGTTTATGCTTTAAAAAACGTAAAATTTGGAAAAAAATTTTCCCAAT
10534820 TCAAAACTACGTTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAATACCTCGTTTGCAC
66 TCAAAACTACGTTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAATACCTCGTTTGCAC
* *
10534885 TTTCAAAAATGTAATTTTTGTAATTTTTAATCAAATACTCTGTTTATACTATTATAAACATGGTG
131 TTTCAAAAATGTAATGTTTGTAATTTTTAATCAAATACTCTGTTTATACTATTATAAACGTGGTG
*
10534950 ATTATTTTTTATATATTTTTCATTATTTAAACAAACCTTATAAACTTATTGTCTCTATTCATAAA
196 ATTATTTTTTATATATTTTTTATTATTTAAACAAACCTTATAAACTTATTGTCTCTATTCATAAA
*
10535015 AATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCGTAAGTGGTTTA-TCGATACCATATTC
261 AATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACT-GATACCATATTC
* * * *
10535079 TTAAAAATAAATTTACAAATATTACTTAAATACTTTTGTTTCTTATATGAAGAACTTAGTGTTTA
325 TTAAAAATAAATTTACAAATATCACTTAAATAC--TTATTTCTTATATGAAAAACTTAATGTTTA
*
10535144 -TTTTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACGTATAATTTG-AAAAAAAATTCCAA
388 TTTTTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACGTAAAATTTGAAAAAAAAATTCCAA
* *
10535207 TTGAAAACTATGTTTCTATTTAAAAATTGTATTATTTTCATTTTTAGTTAAATAATCCATTTTCA
453 TTAAAAACTATGTTTCTATTTAAAAATCGTATTA-TTTCATTTTTAGTTAAATAA-CCATTTTCA
*
10535272 CTTTAAAAATGTAGTGTTTTTAATATTTTTTCAATTAAATAC-TCAGTTTATAATTTCATAAATG
516 CTTTAAAAATGTAGTGTTTTTAATATTTTTTCAATTAAATACTTGA-TTTATAATTTCATAAATG
* * *
10535336 TGGTGACTATTTTTTTTTTACATTGTTTAAACAAACGCTATAAATTTATTGTCTCCATTCATAAA
580 TGGTGA-TTTTTTTTTTTTACATTGTTTAAACAAACCCTATAAACTTATTGTCTCCATTCATAAA
10535401 AATA
644 AATA
10535405 TAGTCTTTTC
Statistics
Matches: 1255, Mismatches: 141, Indels: 76
0.85 0.10 0.05
Matches are distributed among these distances:
776 52 0.04
777 117 0.09
778 271 0.22
779 174 0.14
780 132 0.11
781 26 0.02
782 1 0.00
784 17 0.01
785 24 0.02
786 40 0.03
787 33 0.03
788 62 0.05
789 90 0.07
790 82 0.07
791 47 0.04
792 68 0.05
793 19 0.02
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (773 bp):
TTTTATTTAAATTAAATATGTTTATGCTTTAAAAAACGTAAAATTTGGAAAAAAATTTTCCCAAT
TCAAAACTACGTTTCTACTTAAAAATCATATTATTTACATTTTTAATTAAATACCTCGTTTGCAC
TTTCAAAAATGTAATGTTTGTAATTTTTAATCAAATACTCTGTTTATACTATTATAAACGTGGTG
ATTATTTTTTATATATTTTTTATTATTTAAACAAACCTTATAAACTTATTGTCTCTATTCATAAA
AATAAAGTTTTTGCTTTTAAGTTTTTTATTTTTGTTTCTTAAGTGGTTTACTGATACCATATTCT
TAAAAATAAATTTACAAATATCACTTAAATACTTATTTCTTATATGAAAAACTTAATGTTTATTT
TTTTTATTTAAATAAAATATGCTTATGCTTTAAAAACGTAAAATTTGAAAAAAAAATTCCAATTA
AAAACTATGTTTCTATTTAAAAATCGTATTATTTCATTTTTAGTTAAATAACCATTTTCACTTTA
AAAATGTAGTGTTTTTAATATTTTTTCAATTAAATACTTGATTTATAATTTCATAAATGTGGTGA
TTTTTTTTTTTTACATTGTTTAAACAAACCCTATAAACTTATTGTCTCCATTCATAAAAATAAGG
TTTTGCTTTTAAGTTTTTTATTTTTCTTTCTTAAGTGGCTTACTCATACCACATTCCCAAAAATA
AATTTATAAACATCACTTAAATACTCCATTTATAATATGGAAAACATAATGTTTAATT
Found at i:10537093 original size:167 final size:167
Alignment explanation
Indices: 10536817--10537142 Score: 643
Period size: 167 Copynumber: 2.0 Consensus size: 167
10536807 AACCAAGTTG
*
10536817 TGAACAAATTATTTATATTGATGATTCAAATTCTGATTTAAATCATGATGTGAAAGTTAAATTTC
1 TGAACAAATTATTTATATTGATGATTCAAATTCTGATTTAAATCATGATGTGAAAGTTAAATTTA
10536882 ATGGGAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATG
66 ATGGGAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATG
10536947 ACAAAAACAAATGTTCAATCATCATGTGTACTAGTAA
131 ACAAAAACAAATGTTCAATCATCATGTGTACTAGTAA
10536984 TGAACAAATTATTTATATTGATGATTCAAATTCTGATTTAAATCATGATGTGAAAGTTAAATTTA
1 TGAACAAATTATTTATATTGATGATTCAAATTCTGATTTAAATCATGATGTGAAAGTTAAATTTA
10537049 ATGGGAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATG
66 ATGGGAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATG
10537114 ACAAAAACAAATGTTCAATCATCATGTGT
131 ACAAAAACAAATGTTCAATCATCATGTGT
10537143 GAATGCTTAC
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
167 158 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (167 bp):
TGAACAAATTATTTATATTGATGATTCAAATTCTGATTTAAATCATGATGTGAAAGTTAAATTTA
ATGGGAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATG
ACAAAAACAAATGTTCAATCATCATGTGTACTAGTAA
Found at i:10537112 original size:47 final size:47
Alignment explanation
Indices: 10537060--10537204 Score: 173
Period size: 47 Copynumber: 3.2 Consensus size: 47
10537050 TGGGAATGCT
10537060 TACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATG
1 TACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATG
*
10537107 TACAATGACA-AAAACAA--AT-GTTC---A-AT-CATCATGTGTGAATG
1 TACAATGA-ATACAACAATGATGGTTCTAAATATCCATCAT-T-TGAATG
10537148 CTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATG
1 --TACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATG
10537197 TACAATGA
1 TACAATGA
10537205 CAAAAACAAA
Statistics
Matches: 82, Mismatches: 2, Indels: 28
0.73 0.02 0.25
Matches are distributed among these distances:
39 6 0.07
40 3 0.04
41 7 0.09
42 1 0.01
43 14 0.17
44 4 0.05
45 4 0.05
46 4 0.05
47 22 0.27
48 1 0.01
49 7 0.09
50 3 0.04
51 6 0.07
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (47 bp):
TACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATG
Found at i:10537206 original size:90 final size:90
Alignment explanation
Indices: 10537053--10537232 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
10537043 AATTTAATGG
10537053 GAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATGACAA
1 GAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATGACAA
10537118 AAACAAATGTTCAATCATCATGTGT
66 AAACAAATGTTCAATCATCATGTGT
10537143 GAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATGACAA
1 GAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATGACAA
10537208 AAACAAATGTTCAATCATCATGTGT
66 AAACAAATGTTCAATCATCATGTGT
10537233 ACTAGTAATG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (90 bp):
GAATGCTTACAATGAATACAACAATGATGGTTCTAAATATCCATCATTTGAATGTACAATGACAA
AAACAAATGTTCAATCATCATGTGT
Found at i:10542158 original size:16 final size:16
Alignment explanation
Indices: 10542123--10542165 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
10542113 AAAACCAACA
** *
10542123 AAAAAATAAAAATTTT
1 AAAAAATAAAAAACTC
10542139 AAAAAATAAAAAACTC
1 AAAAAATAAAAAACTC
*
10542155 AAAATATAAAA
1 AAAAAATAAAA
10542166 TAAATAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAAATAAAAAACTC
Found at i:10543112 original size:5 final size:5
Alignment explanation
Indices: 10543040--10543170 Score: 81
Period size: 5 Copynumber: 24.6 Consensus size: 5
10543030 CAAATAAATA
*
10543040 ATAAT AATAAT AATAAT AATAAT AATAAT ATAGT A-ATAT AGTAAT AATAAT
1 ATAAT -ATAAT -ATAAT -ATAAT -ATAAT ATAAT ATA-AT A-TAAT -ATAAT
* * *
10543091 A-AACA ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATACT ATACT ACTAAT
1 ATAA-T ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A-TAAT
*
10543143 A-ACA- ATAACA ATAAT ATAAT ATAAT ATA
1 ATA-AT ATAA-T ATAAT ATAAT ATAAT ATA
10543171 CTAAACTATA
Statistics
Matches: 106, Mismatches: 7, Indels: 25
0.77 0.05 0.18
Matches are distributed among these distances:
4 6 0.06
5 54 0.51
6 44 0.42
7 2 0.02
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:10543201 original size:51 final size:49
Alignment explanation
Indices: 10543036--10543204 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 49
10543026 AAAGCAAATA
* *
10543036 AATAATAATAATAATAATAATAATAATAATAATATAGT-AATATAGTA-AT
1 AATAATAACAATAATAATAAT-ATAAT-ATAATATAATAAATATAGTATAT
*
10543085 AATAATAAACAATAATAATAATATAATATAATATAATATAATATACTATACT
1 AATAAT-AACAATAATAATAATATAATATAATATAATA-AATATAGTATA-T
* * *
10543137 ACTAATAACAATAACAATAATATAATATAATATACTAAACTATAGTGATAT
1 AATAATAACAATAATAATAATATAATATAATATAATAAA-TATAGT-ATAT
* *
10543188 AATACTAATAATAATAA
1 AATAATAACAATAATAA
10543205 CGAATAATAA
Statistics
Matches: 102, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
48 9 0.09
49 11 0.11
50 24 0.24
51 49 0.48
52 9 0.09
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.33
Consensus pattern (49 bp):
AATAATAACAATAATAATAATATAATATAATATAATAAATATAGTATAT
Found at i:10543230 original size:3 final size:3
Alignment explanation
Indices: 10543036--10543214 Score: 116
Period size: 3 Copynumber: 63.7 Consensus size: 3
10543026 AAAGCAAATA
* *
10543036 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AGT AAT -AT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
10543082 AAT AAT AAT AAAC AAT AAT AAT AAT -AT AAT -AT AAT -AT AAT -AT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
10543124 AAT -AT ACT -AT ACT ACT AAT AAC AAT AAC AAT AAT -AT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
10543168 -AT ACT AA- ACT -AT AGT GAT -AT AAT ACT AAT AAT AAT AACG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
10543210 AAT AA
1 AAT AA
10543215 CAGCAATAGT
Statistics
Matches: 135, Mismatches: 25, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
2 25 0.19
3 106 0.79
4 4 0.03
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10545519 original size:13 final size:13
Alignment explanation
Indices: 10545501--10545532 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
10545491 AAAAATACTA
10545501 AAAATAAACAAAT
1 AAAATAAACAAAT
*
10545514 AAAATAAATAAAT
1 AAAATAAACAAAT
10545527 AAAATA
1 AAAATA
10545533 CCAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAATAAACAAAT
Found at i:10546049 original size:21 final size:20
Alignment explanation
Indices: 10546020--10546060 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
10546010 ACTTTTTCAG
10546020 AAAAAAATTGCC-AAAAATTC
1 AAAAAAATT-CCTAAAAATTC
10546040 AAAAACAATTCCTAAAAATTC
1 AAAAA-AATTCCTAAAAATTC
10546061 TATGATTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.59, C:0.17, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAAAATTCCTAAAAATTC
Found at i:10546589 original size:43 final size:43
Alignment explanation
Indices: 10546532--10546931 Score: 483
Period size: 43 Copynumber: 9.4 Consensus size: 43
10546522 CAATGACTTT
10546532 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* * *
10546575 AAAAAATAAATTGCTCCTCTAAACAAAAGCAGCATAACTTTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* * *
10546618 AAAAAATAAATTGCTCATCTAAACAGGGGCATCATAACTTTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* * * * *
10546661 AAAAAAATAAATTACTTCTCTAAATAGAGGCAGCACAACTTTTG
1 -AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* * * *
10546705 AAAAAATAAATTGCTTCTCTAAACAGAGGTAGCACAACTTTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
*
10546748 AGAAAATAAATTGCTCCTCTAAACAGAGGCACCACT-AC-TTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCA-TAACTTTTG
* * *
10546790 GAAAAATAAATTGCTCATCTAAACAGA-GCACCATAAC-TTTC
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* * * *
10546831 AAAAAATAAAATGCTCCTTTAAACAGAAGCACCACAAC-TTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* *
10546873 -GAAAATAAATTGCTCCTCTAAACAAAGGCACCATAAC-TTTG
1 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
* *
10546914 -AAAAATAAAATACTCCTC
1 AAAAAATAAATTGCTCCTC
10546932 GACAATCATG
Statistics
Matches: 311, Mismatches: 42, Indels: 10
0.86 0.12 0.03
Matches are distributed among these distances:
40 1 0.00
41 84 0.27
42 40 0.13
43 150 0.48
44 36 0.12
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (43 bp):
AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG
Found at i:10546629 original size:86 final size:85
Alignment explanation
Indices: 10546527--10546931 Score: 498
Period size: 87 Copynumber: 4.8 Consensus size: 85
10546517 AGGCTCAATG
10546527 ACTTT-AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTC
1 ACTTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTC
* * *
10546591 CTCTAAACAAAAGCAGCATA
66 CTCTAAACAGAAGCACCACA
* * * *
10546611 ACTTTTGAAAAAATAAATTGCTCATCTAAACAGGGGCATCATAACTTTTGAAAAAAATAAATTAC
1 AC-TTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTG-AAAAAATAAATTGC
* * * *
10546676 TTCTCTAAATAGAGGCAGCACA
64 TCCTCTAAACAGAAGCACCACA
* * * * *
10546698 ACTTTTGAAAAAATAAATTGCTTCTCTAAACAGAGGTAGCACAACTTTTGAGAAAATAAATTGCT
1 AC-TTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCT
* *
10546763 CCTCTAAACAGAGGCACCACT
65 CCTCTAAACAGAAGCACCACA
* * * *
10546784 ACTTTGGAAAAATAAATTGCTCATCTAAACAGA-GCACCATAAC-TTTCAAAAAATAAAATGCTC
1 ACTTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTC
*
10546847 CTTTAAACAGAAGCACCACA
66 CTCTAAACAGAAGCACCACA
* * * *
10546867 ACTTTG-GAAAATAAATTGCTCCTCTAAACAAAGGCACCATAAC-TTTG-AAAAATAAAATACTC
1 ACTTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTC
10546929 CTC
66 CTC
10546932 GACAATCATG
Statistics
Matches: 278, Mismatches: 39, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
82 39 0.14
83 53 0.19
84 9 0.03
85 31 0.11
86 72 0.26
87 74 0.27
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (85 bp):
ACTTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTC
CTCTAAACAGAAGCACCACA
Found at i:10546682 original size:130 final size:129
Alignment explanation
Indices: 10546532--10546918 Score: 518
Period size: 130 Copynumber: 3.0 Consensus size: 129
10546522 CAATGACTTT
*
10546532 AAAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTCCTCTAA
1 AAAAAATAAATTGCTTCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTCCTCTAA
* * * * * *
10546597 ACAAAAGCAGCATAACTTTTGAAAAAATAAATTGCTCATCTAAACAGGGGCATCATAACTTTTGA
66 ACAGAAGCAGCACAACTTTTGAGAAAATAAATTGCTCCTCTAAACAGAGGCACCATAAC-TTTGA
* * * * *
10546662 AAAAAATAAATTACTTCTCTAAATAGAGGCAGCACAACTTTTGAAAAAATAAATTGCTTCTCTAA
1 AAAAAATAAATTGCTTCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTCCTCTAA
* *
10546727 ACAGAGGTAGCACAACTTTTGAGAAAATAAATTGCTCCTCTAAACAGAGGCACCACT-ACTTTG-
66 ACAGAAGCAGCACAACTTTTGAGAAAATAAATTGCTCCTCTAAACAGAGGCACCA-TAACTTTGA
* * * *
10546790 GAAAAATAAATTGC-TCATCTAAACAGA-GCACCATAAC-TTTCAAAAAATAAAATGCTCCTTTA
1 AAAAAATAAATTGCTTC-TCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTCCTCTA
* *
10546852 AACAGAAGCACCACAAC-TTTG-GAAAATAAATTGCTCCTCTAAACAAAGGCACCATAACTTTGA
65 AACAGAAGCAGCACAACTTTTGAGAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTGA
10546915 AAAA
1 AAAA
10546919 TAAAATACTC
Statistics
Matches: 225, Mismatches: 28, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
123 1 0.00
124 38 0.17
125 7 0.03
126 35 0.16
127 10 0.04
128 21 0.09
129 4 0.02
130 108 0.48
131 1 0.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (129 bp):
AAAAAATAAATTGCTTCTCTAAACAGAGGCACCATAACTTTTGAAAAAATAAATTGCTCCTCTAA
ACAGAAGCAGCACAACTTTTGAGAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTGA
Found at i:10548001 original size:24 final size:24
Alignment explanation
Indices: 10547968--10548013 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10547958 TTTCTTTATT
*
10547968 TTTTTATTTTTCATTTTTTCTCAA
1 TTTTTATTTTACATTTTTTCTCAA
* *
10547992 TTTTTCTTTTACTTTTTTTCTC
1 TTTTTATTTTACATTTTTTCTC
10548014 TTTTTTCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTATTTTACATTTTTTCTCAA
Found at i:10548019 original size:24 final size:24
Alignment explanation
Indices: 10547966--10548019 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
10547956 TCTTTCTTTA
*
10547966 TTTTTTTATTTTTCATTTTTTCTC
1 TTTTTTTATTTTACATTTTTTCTC
** * *
10547990 AATTTTTCTTTTACTTTTTTTCTC
1 TTTTTTTATTTTACATTTTTTCTC
10548014 TTTTTT
1 TTTTTT
10548020 CAAACATAAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTTATTTTACATTTTTTCTC
Found at i:10548188 original size:11 final size:11
Alignment explanation
Indices: 10548174--10548249 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 11
10548164 GAGTTTTCCC
10548174 TTTTTTTTTCT
1 TTTTTTTTTCT
*
10548185 TTTTTTTTTAT
1 TTTTTTTTTCT
10548196 TTTTTTATTT-T
1 TTTTTT-TTTCT
*
10548207 TCATTTTTTCTCAAT
1 T--TTTTTTTTC--T
*
10548222 TTTTCTTTTACT
1 TTTT-TTTTTCT
*
10548234 TTTTTTTCTCT
1 TTTTTTTTTCT
10548245 TTTTT
1 TTTTT
10548250 CAAACATAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
11 28 0.54
12 10 0.19
13 8 0.15
14 4 0.08
15 2 0.04
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:10548206 original size:15 final size:14
Alignment explanation
Indices: 10548174--10548215 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
10548164 GAGTTTTCCC
*
10548174 TTTTTTT-TTCTTT
1 TTTTTTTATTTTTT
10548187 TTTTTTTATTTTTT
1 TTTTTTTATTTTTT
*
10548201 TATTTTTCATTTTTT
1 T-TTTTTTATTTTTT
10548216 CTCAATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 7 0.28
14 6 0.24
15 12 0.48
ACGTcount: A:0.07, C:0.05, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTATTTTTT
Found at i:10558683 original size:53 final size:55
Alignment explanation
Indices: 10558621--10558750 Score: 149
Period size: 57 Copynumber: 2.3 Consensus size: 55
10558611 AAATATATCT
* * * *
10558621 AATTATTTCACCTTTTGGGCC-A-AAATAAAAATATTT-TCTCTTTTTGAATTTCTA
1 AATT-TTTCACCATTTGGGCCTATAAAAAAAAAAATTTAT-TCTTTTTGAATCTCTA
**
10558675 AATTTTTCACCATTTGGGCCTATTTAAAAAAAAAAATTTATTCTTTTTTTATCTCTA
1 AATTTTTCACCATTTGGGCCTA--TAAAAAAAAAAATTTATTCTTTTTGAATCTCTA
10558732 AATTTTTCACCATTTGGGC
1 AATTTTTCACCATTTGGGC
10558751 TTATTTAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
53 15 0.23
54 5 0.08
57 44 0.68
58 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (55 bp):
AATTTTTCACCATTTGGGCCTATAAAAAAAAAAATTTATTCTTTTTGAATCTCTA
Found at i:10560378 original size:48 final size:45
Alignment explanation
Indices: 10560333--10560439 Score: 115
Period size: 48 Copynumber: 2.3 Consensus size: 45
10560323 TTCTTTTTCG
* * * *
10560333 TTTTTGGCTCAAGCTGTCCTTTCAGGTTTTTAACTTGAACCTTTTTTT
1 TTTTTAGCTCAAGCTGCCCTTTCAAGTTTTCAACTTGAA-C--TTTTT
* **
10560381 TTTTTAGCTTAAATTGCCCTTTCAAGTTTTCAACTTGAACTTTTT
1 TTTTTAGCTCAAGCTGCCCTTTCAAGTTTTCAACTTGAACTTTTT
*
10560426 TTTTTTGCTCAAGC
1 TTTTTAGCTCAAGC
10560440 AAAGTATTTC
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
45 15 0.31
47 1 0.02
48 32 0.67
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (45 bp):
TTTTTAGCTCAAGCTGCCCTTTCAAGTTTTCAACTTGAACTTTTT
Found at i:10562954 original size:21 final size:21
Alignment explanation
Indices: 10562930--10562972 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
10562920 GATATAGCTC
*
10562930 TAAATATGTATTTAGATGGAT
1 TAAACATGTATTTAGATGGAT
10562951 TAAACATGTATTTAGATGGAT
1 TAAACATGTATTTAGATGGAT
10562972 T
1 T
10562973 CAACTTGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (21 bp):
TAAACATGTATTTAGATGGAT
Found at i:10570171 original size:270 final size:270
Alignment explanation
Indices: 10569685--10570228 Score: 1025
Period size: 270 Copynumber: 2.0 Consensus size: 270
10569675 TTTTGTTGAA
* *
10569685 AATACTTTTAGGACAAGAACAATATGCAATCTACATGTATGTTCTTGAATATGCATACAAAAAAA
1 AATACTTTTAGGACAAGAACAATATGCAATCTACATGTATGTTCATGAATATGCACACAAAAAAA
*
10569750 ATTAAAAGAAGACAAGAAAATTAGTTAGTCAGAATAAACACTATAAAGTAAGTAAACTAATAGCA
66 AATAAAAGAAGACAAGAAAATTAGTTAGTCAGAATAAACACTATAAAGTAAGTAAACTAATAGCA
10569815 TGACCCTAAATTTTGGGTTAACTATAAAAGGTGGAAGGACATAGCTTTACCTATGGTCAAGCTCT
131 TGACCCTAAATTTTGGGTTAACTATAAAAGGTGGAAGGACATAGCTTTACCTATGGTCAAGCTCT
*
10569880 TAAAGTTAATTATATGCAGTTTGGATTACTTCTAAAAGGTTTCTAAATTATTCCTTACATCATTA
196 TAAAGTTAATTATATGCAGTTTGGATTACTTCTAAAAGGTTCCTAAATTATTCCTTACATCATTA
10569945 TCCATCATAG
261 TCCATCATAG
*
10569955 AATATTTTTAGGACAAGAACAATATGCAATCTACATGTATGTTCATGAATATGCACACAAAAAAA
1 AATACTTTTAGGACAAGAACAATATGCAATCTACATGTATGTTCATGAATATGCACACAAAAAAA
*
10570020 AATAAAAGAAGATAAGAAAATTAGTTAGTCAGAATAAACACTATAAAGTAAGTAAACTAATAGCA
66 AATAAAAGAAGACAAGAAAATTAGTTAGTCAGAATAAACACTATAAAGTAAGTAAACTAATAGCA
*
10570085 TGGCCCTAAATTTTGGGTTAACTATAAAAGGTGGAAGGACATAGCTTTACCTATGGTCAAGCTCT
131 TGACCCTAAATTTTGGGTTAACTATAAAAGGTGGAAGGACATAGCTTTACCTATGGTCAAGCTCT
10570150 TAAAGTTAATTATATGCAGTTTGGATTACTTCTAAAAGGTTCCTAAATTATTCCTTACATCATTA
196 TAAAGTTAATTATATGCAGTTTGGATTACTTCTAAAAGGTTCCTAAATTATTCCTTACATCATTA
10570215 TCCATCATAG
261 TCCATCATAG
10570225 AATA
1 AATA
10570229 GTAAGGCACC
Statistics
Matches: 267, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
270 267 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.31
Consensus pattern (270 bp):
AATACTTTTAGGACAAGAACAATATGCAATCTACATGTATGTTCATGAATATGCACACAAAAAAA
AATAAAAGAAGACAAGAAAATTAGTTAGTCAGAATAAACACTATAAAGTAAGTAAACTAATAGCA
TGACCCTAAATTTTGGGTTAACTATAAAAGGTGGAAGGACATAGCTTTACCTATGGTCAAGCTCT
TAAAGTTAATTATATGCAGTTTGGATTACTTCTAAAAGGTTCCTAAATTATTCCTTACATCATTA
TCCATCATAG
Found at i:10571861 original size:20 final size:20
Alignment explanation
Indices: 10571824--10571862 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10571814 ATCCCCAAAC
*
10571824 TTAGATTTTTTCATTTTTTT
1 TTAGATTTTTTCAATTTTTT
10571844 TTAGA-TTTTTCAAATTTTT
1 TTAGATTTTTTC-AATTTTT
10571863 CCAAAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (20 bp):
TTAGATTTTTTCAATTTTTT
Found at i:10572320 original size:9 final size:9
Alignment explanation
Indices: 10572306--10572334 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
10572296 GACAGTTAAG
10572306 AAGAAAATA
1 AAGAAAATA
10572315 AAGAAAATA
1 AAGAAAATA
10572324 AAGAAAATA
1 AAGAAAATA
10572333 AA
1 AA
10572335 AAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (9 bp):
AAGAAAATA
Found at i:10572342 original size:6 final size:7
Alignment explanation
Indices: 10572327--10572354 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
10572317 GAAAATAAAG
10572327 AAAATAA
1 AAAATAA
10572334 AAAATAA
1 AAAATAA
10572341 AAAATAA
1 AAAATAA
10572348 AAAATAA
1 AAAATAA
10572355 TAATATAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:10572358 original size:3 final size:3
Alignment explanation
Indices: 10572350--10572460 Score: 59
Period size: 3 Copynumber: 41.3 Consensus size: 3
10572340 AAAAATAAAA
* *
10572350 AAT AAT AAT -AT AGT AAT -AT AGT AAT AAT -AT AAT -AT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
10572393 -AT AAT -AT AAT -AT AGT ACT AAT AAC AAT AAT AAT GAT -AT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
10572436 AAT -AT AAT CAG AAT -AT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
10572461 TACTATACTA
Statistics
Matches: 81, Mismatches: 14, Indels: 26
0.67 0.12 0.21
Matches are distributed among these distances:
2 26 0.32
3 55 0.68
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:10572403 original size:36 final size:36
Alignment explanation
Indices: 10572363--10572467 Score: 124
Period size: 36 Copynumber: 2.9 Consensus size: 36
10572353 AATAATATAG
10572363 TAATATAGTAATAATATAATATAATATAATATAATA
1 TAATATAGTAATAATATAATATAATATAATATAATA
* *
10572399 TAATATAGTACTAATA-ACA-ATAATAATGATATAATA
1 TAATATAGTAATAATATA-ATATAAT-ATAATATAATA
* * * *
10572435 TAATATAATCAGAATATAATATAATATACTATA
1 TAATATAGTAATAATATAATATAATATAATATA
10572468 CTACAGTGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
35 6 0.11
36 45 0.79
37 6 0.11
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (36 bp):
TAATATAGTAATAATATAATATAATATAATATAATA
Found at i:10572455 original size:41 final size:40
Alignment explanation
Indices: 10572378--10572455 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
10572368 TAGTAATAAT
* *
10572378 ATAATATAATATAATATAATATAATATAGTACTAATAACA
1 ATAATATAATATAATATAATATAATAGAATACTAATAACA
*
10572418 ATAATAATGATATAATATAATATAATCAGAATA-TAATA
1 ATAAT-ATAATATAATATAATATAAT-AGAATACTAATA
10572456 TAATATACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 5 0.15
41 24 0.73
42 4 0.12
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (40 bp):
ATAATATAATATAATATAATATAATAGAATACTAATAACA
Found at i:10572470 original size:5 final size:5
Alignment explanation
Indices: 10572363--10572467 Score: 106
Period size: 5 Copynumber: 20.4 Consensus size: 5
10572353 AATAATATAG
* *
10572363 TAATA TAGTAA TAATA TAATA TAATA TAATA TAATA TAATA TAGTA CTAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA -TAATA
* *
10572415 -ACA-A TAATAA TGATA TAATA TAATA TAATCA GAATA TAATA TAATA
1 TA-ATA TAAT-A TAATA TAATA TAATA TAAT-A TAATA TAATA TAATA
*
10572461 TACTA TA
1 TAATA TA
10572468 CTACAGTGAT
Statistics
Matches: 84, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
4 3 0.04
5 65 0.77
6 16 0.19
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (5 bp):
TAATA
Found at i:10573007 original size:22 final size:21
Alignment explanation
Indices: 10572964--10573009 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
10572954 TAAAAATAAA
**
10572964 ATTTTTGCTTTTAAGTTTTTT
1 ATTTTTGCTTTTAAGTGGTTT
*
10572985 ATTTTTGTTTCTTAAGTGGTTT
1 ATTTTTGCTT-TTAAGTGGTTT
10573007 ATT
1 ATT
10573010 GATACTGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.15, C:0.04, G:0.13, T:0.67
Consensus pattern (21 bp):
ATTTTTGCTTTTAAGTGGTTT
Found at i:10574854 original size:22 final size:19
Alignment explanation
Indices: 10574805--10574856 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
10574795 AAAAATATTA
*
10574805 TTTTTATTATAAATTATAT
1 TTTTTATTATAAATTATAG
10574824 TTTAATTATATATAAATATAATAG
1 TTT--TTAT-TATAAAT-T-ATAG
10574848 TTTTTATTA
1 TTTTTATTA
10574857 AATTAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
19 3 0.11
21 6 0.22
22 11 0.41
23 1 0.04
24 6 0.22
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTTATTATAAATTATAG
Found at i:10576011 original size:23 final size:22
Alignment explanation
Indices: 10575976--10576024 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
10575966 TATTAATATT
*
10575976 AAAAAAATAAAAATAGAAA-AAG
1 AAAAAAATAAAAAGA-AAATAAG
*
10575998 AAAAAAGATTAAAAGAAAATAAG
1 AAAAAA-ATAAAAAGAAAATAAG
10576021 AAAA
1 AAAA
10576025 CAAACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (22 bp):
AAAAAAATAAAAAGAAAATAAG
Found at i:10576829 original size:19 final size:19
Alignment explanation
Indices: 10576801--10576844 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
10576791 AGGCAAGATC
*
10576801 TAAAAAATTA-TTTTTACTT
1 TAAAATATTAGTTTTT-CTT
10576820 TAAAATATTAGTTTTTCTT
1 TAAAATATTAGTTTTTCTT
10576839 TAAAAT
1 TAAAAT
10576845 CATTTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (19 bp):
TAAAATATTAGTTTTTCTT
Found at i:10583050 original size:7 final size:7
Alignment explanation
Indices: 10583038--10583073 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
10583028 TATATTAAAT
10583038 TTTTTAA
1 TTTTTAA
10583045 TTTTTAA
1 TTTTTAA
10583052 TTTTTAA
1 TTTTTAA
10583059 TTTTTAA
1 TTTTTAA
10583066 TTTTTAA
1 TTTTTAA
10583073 T
1 T
10583074 CTTAAGAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTTAA
Found at i:10583254 original size:627 final size:630
Alignment explanation
Indices: 10582423--10583567 Score: 1843
Period size: 627 Copynumber: 1.8 Consensus size: 630
10582413 TAAATTATAT
* *
10582423 TTTTTAATTTTTAGTTTTTAATCTTAAAAGTAATAGATCGTAAAACACTAAATTTATTAAGTAAC
1 TTTTTAATTTTTAATTTTTAATCTTAAAAGTAATAAATCGTAAAACACTAAATTTATTAAGTAAC
* * ***
10582488 TTAATCTTTTTTATATATTAATTGATGTAAAAATTTTTTTATCACAAATTACTTTCAATATATTA
66 TTAATCTTTTTAATATACTAATTGATGTAAAAA-TAAATTATCACAAATTACTTTCAATATATTA
* *
10582553 TATAATTAATATAATATTCAATAATTACACAAAAATAAAAATAAATTAATAAGAATTAATTTAAT
130 TATAATAAATAGAATATTCAATAATTACACAAAAATAAAAATAAATTAATAAGAATTAATTTAAT
* * *
10582618 AGCAAAAGAATTGATAACAATATAAATACCAAAACAACAAAACAATTATTAAATTTTAAATATAA
195 AGCAAAAGAATTGACAACAATATAAATACCAAAACAACAAAAAAATTATTAAATTTCAAATATAA
*
10582683 AATTATAAATTAATAAATAACAAAATCAAAATAT-A-A-CA-TTTAATTTTAATTATTTTTCATC
260 AATTATAAATTAATAAATAACAAAATCAAAATATAATATAATTTTAATTTTAATTATTTTTCATC
* * *
10582744 TAATTTATACAAAAAAATTTATTAAAATTTTTCATCTAAAATCCCTGTATATATT-AAATTAAAT
325 TAACTTATACAAAAAAATTTATTAAAATTTTTCATCCAAAATCCCTATATAT-TTCAAATTAAAT
* * * **
10582808 TATTAATCTCTCAATTTTTTTTTAATTATAAATTCTCAATTCTTCTAACTAAATTTTATGTAAAA
389 TATTAATCTCTCAA-TTTTTTCT-ATTATAAAATCTCAATTCCTCTAACTAAATTTTACCTAAAA
* *
10582873 AAATTTTAAAAATTATAAATTTTTAAATTTATATTTTAATAAAATTAATTACAAAATTAAATAAC
452 AAATTTTAAAAATTACAAAATTTTAAATTTATATTTTAATAAAATTAATTACAAAATTAAATAAC
10582938 GTAGTGACATGCTTATTATTTATATAAAAACAAAATAAACTTATATTTAAAAATATTAATATTAT
517 GTAGTGACATGCTTATTATTTATATAAAAACAAAATAAACTTATATTTAAAAATATTAATATTAT
10583003 TTATTTCATTATTAAAAATTGAATCTATATTAAATTTTTTAATTTTTAA
582 TTATTTCATTATTAAAAATTGAATCTATATTAAATTTTTTAATTTTTAA
* *
10583052 TTTTTAATTTTTAATTTTTAATCTTAAGAGTAATAAATCGTAAAACGCTAAATTTATTAAGTAAC
1 TTTTTAATTTTTAATTTTTAATCTTAAAAGTAATAAATCGTAAAACACTAAATTTATTAAGTAAC
**
10583117 TTAATCTTTTTAATATACTAATTGATGTAAAAA-AAATTATCGTAAATTACTTTCAATATATTAT
66 TTAATCTTTTTAATATACTAATTGATGTAAAAATAAATTATCACAAATTACTTTCAATATATTAT
* *
10583181 ATAATAAATAGAATATTCAATAATTACATAAAAATAAAATTAAATTAATAAGAATTAATTTAATA
131 ATAATAAATAGAATATTCAATAATTACACAAAAATAAAAATAAATTAATAAGAATTAATTTAATA
* * *
10583246 GCAAAAGAATTGACAATAGTATAAATACCAAAATAACAAAAAAATTATTAAATTTCAAATATAAA
196 GCAAAAGAATTGACAACAATATAAATACCAAAACAACAAAAAAATTATTAAATTTCAAATATAAA
10583311 ATTATAAATTAATAAATAACAAAATCAAAATATAATATTTAATTTTAATTTTAATTATTTTTCAT
261 ATTATAAATTAATAAATAACAAAATCAAAATATAATA--TAATTTTAATTTTAATTATTTTTCAT
* *
10583376 CTAACTTATACAAAAAAATTTATTAAAATTTTTCATCCACAATCCCTATATATTTCATATTAAAT
324 CTAACTTATACAAAAAAATTTATTAAAATTTTTCATCCAAAATCCCTATATATTTCAAATTAAAT
* * *
10583441 TATTAATCTTTTAATTTTTTCTATTATAAAATCTCAATTCCTCTAACTAAATTTTACCTTAAAAA
389 TATTAATCTCTCAATTTTTTCTATTATAAAATCTCAATTCCTCTAACTAAATTTTACCTAAAAAA
* *
10583506 ATTTTTAAAATTACAAAATTTTAAATTTATATTTTAATAAAATTAATTATAAAATTAAATAA
454 ATTTTAAAAATTACAAAATTTTAAATTTATATTTTAATAAAATTAATTACAAAATTAAATAA
10583568 AAATCACCCA
Statistics
Matches: 470, Mismatches: 39, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
627 179 0.38
628 1 0.00
629 93 0.20
631 96 0.20
632 10 0.02
633 91 0.19
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.42
Consensus pattern (630 bp):
TTTTTAATTTTTAATTTTTAATCTTAAAAGTAATAAATCGTAAAACACTAAATTTATTAAGTAAC
TTAATCTTTTTAATATACTAATTGATGTAAAAATAAATTATCACAAATTACTTTCAATATATTAT
ATAATAAATAGAATATTCAATAATTACACAAAAATAAAAATAAATTAATAAGAATTAATTTAATA
GCAAAAGAATTGACAACAATATAAATACCAAAACAACAAAAAAATTATTAAATTTCAAATATAAA
ATTATAAATTAATAAATAACAAAATCAAAATATAATATAATTTTAATTTTAATTATTTTTCATCT
AACTTATACAAAAAAATTTATTAAAATTTTTCATCCAAAATCCCTATATATTTCAAATTAAATTA
TTAATCTCTCAATTTTTTCTATTATAAAATCTCAATTCCTCTAACTAAATTTTACCTAAAAAAAT
TTTAAAAATTACAAAATTTTAAATTTATATTTTAATAAAATTAATTACAAAATTAAATAACGTAG
TGACATGCTTATTATTTATATAAAAACAAAATAAACTTATATTTAAAAATATTAATATTATTTAT
TTCATTATTAAAAATTGAATCTATATTAAATTTTTTAATTTTTAA
Found at i:10583333 original size:29 final size:28
Alignment explanation
Indices: 10583266--10583345 Score: 67
Period size: 29 Copynumber: 2.9 Consensus size: 28
10583256 TGACAATAGT
* *
10583266 ATAAATACCAAAAT-AACAA-AAAAATTA
1 ATAAATAACAAAATCAA-AATATAAATTA
* **
10583293 TTAAATTTCAAATAT-AAAATTATAAATTA
1 ATAAATAACAAA-ATCAAAA-TATAAATTA
10583322 ATAAATAACAAAATCAAAATATAA
1 ATAAATAACAAAATCAAAATATAA
10583346 TATTTAATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
27 11 0.26
28 11 0.26
29 20 0.48
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (28 bp):
ATAAATAACAAAATCAAAATATAAATTA
Found at i:10585265 original size:12 final size:12
Alignment explanation
Indices: 10585248--10585281 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10585238 AAAACATATA
10585248 TAAATATAAAAT
1 TAAATATAAAAT
*
10585260 TAAATAGAAAAT
1 TAAATATAAAAT
*
10585272 AAAATATAAA
1 TAAATATAAA
10585282 CTTTTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
TAAATATAAAAT
Found at i:10587298 original size:16 final size:15
Alignment explanation
Indices: 10587277--10587306 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10587267 TATCATGGAT
10587277 TTAAAAAAAGAAAAAA
1 TTAAAAAAA-AAAAAA
10587293 TTAAAAAAAAAAAA
1 TTAAAAAAAAAAAA
10587307 CTAAAACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (15 bp):
TTAAAAAAAAAAAAA
Found at i:10587304 original size:14 final size:15
Alignment explanation
Indices: 10587280--10587322 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
10587270 CATGGATTTA
*
10587280 AAAAAAGAAAAAATT
1 AAAAAAGAAAAAACT
10587295 AAAAAA-AAAAAACT
1 AAAAAAGAAAAAACT
10587309 AAAACTAAGAAAAA
1 AAAA--AAGAAAAA
10587323 GTTGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 11 0.46
15 6 0.25
16 2 0.08
17 5 0.21
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.09
Consensus pattern (15 bp):
AAAAAAGAAAAAACT
Found at i:10588550 original size:14 final size:14
Alignment explanation
Indices: 10588531--10588558 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10588521 GAAATTTCCT
10588531 CTTCATATTTAATA
1 CTTCATATTTAATA
10588545 CTTCATATTTAATA
1 CTTCATATTTAATA
10588559 TGTTTAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
CTTCATATTTAATA
Found at i:10589381 original size:22 final size:21
Alignment explanation
Indices: 10589338--10589381 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
10589328 CTAACAAGCA
10589338 AATCAAGTCATTTTTATTGTTC
1 AATCAAGTCATTTTTA-TGTTC
10589360 AATCAAAGTCATATTTTA-GTTC
1 AATC-AAGTCAT-TTTTATGTTC
10589382 CTGGAAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (21 bp):
AATCAAGTCATTTTTATGTTC
Found at i:10591936 original size:25 final size:26
Alignment explanation
Indices: 10591902--10591953 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
10591892 CATTATAACT
10591902 AACTATCCATAACCTGACT-GGTTGA
1 AACTATCCATAACCTGACTGGGTTGA
*
10591927 AACTATCCATAATCTGACTGGGTTGA
1 AACTATCCATAACCTGACTGGGTTGA
10591953 A
1 A
10591954 TTGAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
AACTATCCATAACCTGACTGGGTTGA
Found at i:10596595 original size:27 final size:28
Alignment explanation
Indices: 10596556--10596610 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
10596546 ACAAGTAAAA
* *
10596556 TTTGATAATTTTTTTATATAATTTTGAT
1 TTTGATAATTTTTTAATAAAATTTTGAT
10596584 TTTGATAA-TTTTTAATAAAATTTTGAT
1 TTTGATAATTTTTTAATAAAATTTTGAT
10596611 AACCTTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (28 bp):
TTTGATAATTTTTTAATAAAATTTTGAT
Found at i:10597046 original size:22 final size:21
Alignment explanation
Indices: 10597021--10597162 Score: 59
Period size: 22 Copynumber: 6.5 Consensus size: 21
10597011 ATGATTGATA
10597021 ATTAAGTTATCATTAATTTATT
1 ATTAAGTTATCATT-ATTTATT
* * ** *
10597043 ATTATGTTATTAGCGATTTACT
1 ATTAAGTTATCA-TTATTTATT
* *
10597065 ATTAATTTATCAATTATATATT
1 ATTAAGTTATC-ATTATTTATT
* * *
10597087 ATTAAATTATCAATGATTTACT
1 ATTAAGTTATC-ATTATTTATT
* * * *
10597109 ACTAAATTATTATTGATTTTTT
1 ATTAAGTTATCATT-ATTTATT
* * * *
10597131 ACTAATTTATGAATTATTTACT
1 ATTAAGTTAT-CATTATTTATT
*
10597153 ACTAAGTTAT
1 ATTAAGTTAT
10597163 AAATGATTTA
Statistics
Matches: 90, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
21 2 0.02
22 84 0.93
23 4 0.04
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (21 bp):
ATTAAGTTATCATTATTTATT
Found at i:10597105 original size:44 final size:44
Alignment explanation
Indices: 10597005--10597118 Score: 106
Period size: 44 Copynumber: 2.6 Consensus size: 44
10596995 TAAAAAAAAT
* * * **
10597005 TTATCAATGATTGA-TAATTAAGTTATCATTAATTTATTATTATG
1 TTATCAATGATTTACT-ATTAAATTATCATTAATATATTATTAAA
* ** *
10597049 TTATTAGCGATTTACTATTAATTTATCAATT-ATATATTATTAAA
1 TTATCAATGATTTACTATTAAATTATC-ATTAATATATTATTAAA
*
10597093 TTATCAATGATTTACTACTAAATTAT
1 TTATCAATGATTTACTATTAAATTAT
10597119 TATTGATTTT
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
44 51 0.93
45 4 0.07
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (44 bp):
TTATCAATGATTTACTATTAAATTATCATTAATATATTATTAAA
Found at i:10597119 original size:66 final size:66
Alignment explanation
Indices: 10597049--10597172 Score: 149
Period size: 66 Copynumber: 1.9 Consensus size: 66
10597039 TATTATTATG
* * * *
10597049 TTATTAGCGATTTACTATTAATTTATCAATTATATATTATTAAATTATCAATGATTTACTACTAA
1 TTATTAGCGATTTACTACTAATTTATCAATTATATACTACTAAATTATAAATGATTTACTACTAA
10597114 A
66 A
** ** * * *
10597115 TTATTATTGATTTTTTACTAATTTATGAATTATTTACTACTAAGTTATAAATGATTTA
1 TTATTAGCGATTTACTACTAATTTATCAATTATATACTACTAAATTATAAATGATTTA
10597173 ATTTACTACT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
66 47 1.00
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (66 bp):
TTATTAGCGATTTACTACTAATTTATCAATTATATACTACTAAATTATAAATGATTTACTACTAA
A
Found at i:10597150 original size:44 final size:45
Alignment explanation
Indices: 10597057--10597263 Score: 120
Period size: 44 Copynumber: 4.6 Consensus size: 45
10597047 TGTTATTAGC
* * * * * * *
10597057 GATTTACTATTAATTTATCAATTATATA-TTATTAAATTATCAAT
1 GATTTACTACTAAATTATAAATGATTTATTTACTAATTTATCAAT
* * *
10597101 GATTTACTACTAAATTATTATTGATTT-TTTACTAATTTATGAAT
1 GATTTACTACTAAATTATAAATGATTTATTTACTAATTTATCAAT
* * * *
10597145 TATTTACTACTAAGTTATAAATGATTTAATTTACTACTAAGTTA-CTGAT
1 GATTTACTACTAAATTATAAATGATTT-A-TT--TACTAATTTATC-AAT
** * * *
10597194 GATTTGTTA-TAAAGTTATAAATTATTTA-CTATTAATTTATCAAT
1 GATTTACTACTAAA-TTATAAATGATTTATTTACTAATTTATCAAT
* *
10597238 AATTTACTA-TAAAATTATCAATGATT
1 GATTTACTACT-AAATTATAAATGATT
10597264 AACTAATATA
Statistics
Matches: 123, Mismatches: 30, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
44 84 0.68
45 4 0.03
47 2 0.02
48 4 0.03
49 29 0.24
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (45 bp):
GATTTACTACTAAATTATAAATGATTTATTTACTAATTTATCAAT
Found at i:10597171 original size:22 final size:22
Alignment explanation
Indices: 10597057--10597268 Score: 106
Period size: 22 Copynumber: 9.4 Consensus size: 22
10597047 TGTTATTAGC
* *
10597057 GATTTACTATTAATTTATCAAT
1 GATTTACTACTAAATTATCAAT
* * * *
10597079 TATATATTATTAAATTATCAAT
1 GATTTACTACTAAATTATCAAT
* *
10597101 GATTTACTACTAAATTATTATT
1 GATTTACTACTAAATTATCAAT
** * *
10597123 GATTTTTTACTAATTTATGAAT
1 GATTTACTACTAAATTATCAAT
* * *
10597145 TATTTACTACTAAGTTATAAAT
1 GATTTACTACTAAATTATCAAT
* *
10597167 GATTTAATTTACTACTAAGTTA-CTGAT
1 G-----ATTTACTACTAAATTATC-AAT
** *
10597194 GATTTGTTA-TAAAGTTATAAAT
1 GATTTACTACTAAA-TTATCAAT
* * *
10597216 TATTTACTATTAATTTATCAAT
1 GATTTACTACTAAATTATCAAT
*
10597238 AATTTACTA-TAAAATTATCAAT
1 GATTTACTACT-AAATTATCAAT
*
10597260 GATTAACTA
1 GATTTACTA
10597269 ATATACTACT
Statistics
Matches: 143, Mismatches: 37, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
21 4 0.03
22 117 0.82
23 3 0.02
27 19 0.13
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.48
Consensus pattern (22 bp):
GATTTACTACTAAATTATCAAT
Found at i:10597217 original size:71 final size:71
Alignment explanation
Indices: 10597102--10597243 Score: 171
Period size: 71 Copynumber: 2.0 Consensus size: 71
10597092 ATTATCAATG
* * * *
10597102 ATTTACTACTAAATTATTATTGATTTTTTACTAATTTATGAATTATTTACTACTAAGTTATAAAT
1 ATTTACTACTAAATTATGATTGATTTGTTACTAAGTTATAAATTATTTACTACTAAGTTATAAAT
*
10597167 GATTTA
66 AATTTA
* * * *
10597173 ATTTACTACTAAGTTACTGA-TGATTTGTTA-TAAAGTTATAAATTATTTACTATTAATTTATCA
1 ATTTACTACTAAATTA-TGATTGATTTGTTACT-AAGTTATAAATTATTTACTACTAAGTTATAA
10597236 ATAATTTA
64 ATAATTTA
10597244 CTATAAAATT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
70 1 0.02
71 57 0.95
72 2 0.03
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.49
Consensus pattern (71 bp):
ATTTACTACTAAATTATGATTGATTTGTTACTAAGTTATAAATTATTTACTACTAAGTTATAAAT
AATTTA
Found at i:10597323 original size:22 final size:21
Alignment explanation
Indices: 10597298--10597375 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
10597288 CTGATTTACA
*
10597298 ATTAAGTTATTAGTAATTTATT
1 ATTAAGTTATTAATAATTTA-T
* * *
10597320 ATTAAGTTATAAAAAATTTAC
1 ATTAAGTTATTAATAATTTAT
*
10597341 ATATAAATTATTAATAATTTACT
1 AT-TAAGTTATTAATAATTTA-T
*
10597364 ATTATGTTATTA
1 ATTAAGTTATTA
10597376 TGCATTTACT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
21 2 0.05
22 40 0.91
23 2 0.05
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (21 bp):
ATTAAGTTATTAATAATTTAT
Found at i:10597382 original size:22 final size:22
Alignment explanation
Indices: 10597347--10597406 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
10597337 TTACATATAA
* *
10597347 ATTATTAATAATTTACTATTAT
1 ATTATTATTGATTTACTATTAT
*
10597369 GTTATTA-TGCATTTACTATTAT
1 ATTATTATTG-ATTTACTATTAT
10597391 ATTATTATTGATTTAC
1 ATTATTATTGATTTAC
10597407 AACTTAGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.91
23 2 0.06
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTATTATTGATTTACTATTAT
Found at i:10597611 original size:22 final size:22
Alignment explanation
Indices: 10597586--10597666 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
10597576 ATTATCACTA
10597586 ATTTACTATTAAATAATTAATG
1 ATTTACTATTAAATAATTAATG
* *
10597608 ATTTACTACT-ACTAAATTGAAACTG
1 ATTTACTATTAAAT-AATT--AA-TG
* * * *
10597633 ATTTACTATTAAGTTATTACTA
1 ATTTACTATTAAATAATTAATG
10597655 ATTTACTATTAA
1 ATTTACTATTAA
10597667 GTTATCATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
21 2 0.04
22 26 0.55
23 1 0.02
24 2 0.04
25 14 0.30
26 2 0.04
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (22 bp):
ATTTACTATTAAATAATTAATG
Found at i:10597618 original size:44 final size:44
Alignment explanation
Indices: 10597560--10597717 Score: 129
Period size: 44 Copynumber: 3.5 Consensus size: 44
10597550 TTAAGTTTCC
* * *
10597560 AATGATTAATTACTAAATTATCACTAATTTACTATTAAATAATT
1 AATGATTAACTACTAAATTATCACTAATTTACTATTAAGTTATT
* *
10597604 AATGATTTACTACTACTAAATTGA-AACTGATTTACTATTAAGTTATT
1 AATGA-TTA--ACTACTAAATT-ATCACTAATTTACTATTAAGTTATT
* * * * * * * * * *
10597651 ACTAATTTACTATTAAGTTATCATTTATTTATTATCAAGTTATC
1 AATGATTAACTACTAAATTATCACTAATTTACTATTAAGTTATT
*
10597695 AATGATTAACTATTAAATTATCA
1 AATGATTAACTACTAAATTATCA
10597718 TTTATTTTTT
Statistics
Matches: 89, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.01
44 50 0.56
45 3 0.03
46 2 0.02
47 32 0.36
48 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (44 bp):
AATGATTAACTACTAAATTATCACTAATTTACTATTAAGTTATT
Found at i:10597680 original size:22 final size:22
Alignment explanation
Indices: 10597633--10597724 Score: 103
Period size: 22 Copynumber: 4.2 Consensus size: 22
10597623 ATTGAAACTG
* * *
10597633 ATTTACTATTAAGTTATTACTA
1 ATTTACTATTAAGTTATCATTT
10597655 ATTTACTATTAAGTTATCATTT
1 ATTTACTATTAAGTTATCATTT
* * * *
10597677 ATTTATTATCAAGTTATCAATG
1 ATTTACTATTAAGTTATCATTT
* *
10597699 ATTAACTATTAAATTATCATTT
1 ATTTACTATTAAGTTATCATTT
10597721 ATTT
1 ATTT
10597725 TTTAATAACC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 56 1.00
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCATTT
Found at i:10597745 original size:44 final size:44
Alignment explanation
Indices: 10597659--10597750 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
10597649 TTACTAATTT
* **
10597659 ACTATTAAGTTATCATTTATTTATTATCAAGTTATCAATGATTA
1 ACTATTAAATTATCATTTATTTATTATCAACCTATCAATGATTA
* *
10597703 ACTATTAAATTATCATTTATTTTTTAAT-AACCTAT-AATTGATTT
1 ACTATTAAATTATCATTTATTTATT-ATCAACCTATCAA-TGATTA
10597747 ACTA
1 ACTA
10597751 ATATGTTGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 37 0.90
45 2 0.05
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (44 bp):
ACTATTAAATTATCATTTATTTATTATCAACCTATCAATGATTA
Found at i:10598170 original size:22 final size:22
Alignment explanation
Indices: 10598034--10598183 Score: 115
Period size: 22 Copynumber: 6.8 Consensus size: 22
10598024 TATTAACTAC
* *
10598034 TAAGTTATTAATGATTTTAT-TT
1 TAAGTTATAAATGA-TTTATCAT
* * *
10598056 CTAATTTATGAATGATTTGTCAT
1 -TAAGTTATAAATGATTTATCAT
* *
10598079 TAAGCTATGAATGATTTATCAT
1 TAAGTTATAAATGATTTATCAT
*
10598101 TAAGTTATAAATGATTTCT-AT
1 TAAGTTATAAATGATTTATCAT
* *** *
10598122 TAAATTATTGGTGATTTATCAC
1 TAAGTTATAAATGATTTATCAT
*
10598144 TAAGTTATAAATGATTTATTAT
1 TAAGTTATAAATGATTTATCAT
* * *
10598166 AAAGTTGTAAATTATTTA
1 TAAGTTATAAATGATTTA
10598184 CTACTAACTT
Statistics
Matches: 100, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
21 16 0.16
22 71 0.71
23 13 0.13
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (22 bp):
TAAGTTATAAATGATTTATCAT
Found at i:10598276 original size:22 final size:21
Alignment explanation
Indices: 10598251--10598317 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
10598241 AAATTGTCAC
*
10598251 TAATTTATAACTAAGTTATTAG
1 TAATTTAT-ACTAAGTTATTAA
* *
10598273 TAATTTACTATTATGTTATTAA
1 TAATTTA-TACTAAGTTATTAA
* *
10598295 TGATTTATTTCTAAGTTATTAA
1 TAATTTA-TACTAAGTTATTAA
10598317 T
1 T
10598318 TTATTATTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
22 35 0.97
23 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.52
Consensus pattern (21 bp):
TAATTTATACTAAGTTATTAA
Found at i:10598338 original size:41 final size:41
Alignment explanation
Indices: 10598273--10598430 Score: 113
Period size: 41 Copynumber: 3.7 Consensus size: 41
10598263 AAGTTATTAG
* ** *
10598273 TAATTTACTATTATGTTATTAATGATTTATTTCTAAGTTAT
1 TAATTTATTATTAAATTATCAATGATTTATTTCTAAGTTAT
* * **
10598314 TAATTTATTATTAAATTATCAATGATTTACAATTATATTTTTAT
1 TAATTTATTATTAAATTATCAATGATTT--ATTTCTA-AGTTAT
* * * * *
10598358 T-AGTAATTTACT-ATTATATTATTAATGATTTATTTCTAAGTTAT
1 TAATTTA-TTATTAAAT-TATCA---ATGATTTATTTCTAAGTTAT
10598402 TAATTTATTATTAAATTATCAATGATTTA
1 TAATTTATTATTAAATTATCAATGATTTA
10598431 CAATTATATT
Statistics
Matches: 85, Mismatches: 22, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
41 32 0.38
43 10 0.12
44 26 0.31
45 10 0.12
47 7 0.08
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.54
Consensus pattern (41 bp):
TAATTTATTATTAAATTATCAATGATTTATTTCTAAGTTAT
Found at i:10598341 original size:22 final size:22
Alignment explanation
Indices: 10598316--10598430 Score: 67
Period size: 22 Copynumber: 5.2 Consensus size: 22
10598306 TAAGTTATTA
10598316 ATTTATTATTAAATTATCAATG
1 ATTTATTATTAAATTATCAATG
** * * * *
10598338 ATTTACAATTATATTTTTATTAGTA
1 ATTTATTATTA-A--ATTATCAATG
* * *
10598363 ATTTACTATTATATTATTAATG
1 ATTTATTATTAAATTATCAATG
* *
10598385 ATTTATT-TCTAAGTTAT---TA
1 ATTTATTAT-TAAATTATCAATG
10598404 ATTTATTATTAAATTATCAATG
1 ATTTATTATTAAATTATCAATG
10598426 ATTTA
1 ATTTA
10598431 CAATTATATT
Statistics
Matches: 68, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
19 15 0.22
20 1 0.01
21 1 0.01
22 34 0.50
23 1 0.01
25 16 0.24
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (22 bp):
ATTTATTATTAAATTATCAATG
Found at i:10598357 original size:25 final size:25
Alignment explanation
Indices: 10598329--10598377 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
10598319 TATTATTAAA
*
10598329 TTATCAATGATTTACAATTATATTT
1 TTATCAATAATTTACAATTATATTT
* * *
10598354 TTATTAGTAATTTACTATTATATT
1 TTATCAATAATTTACAATTATATT
10598378 ATTAATGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TTATCAATAATTTACAATTATATTT
Found at i:10598382 original size:88 final size:88
Alignment explanation
Indices: 10598266--10598444 Score: 349
Period size: 88 Copynumber: 2.0 Consensus size: 88
10598256 TATAACTAAG
*
10598266 TTATTAGTAATTTACTATTATGTTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
1 TTATTAGTAATTTACTATTATATTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
10598331 ATCAATGATTTACAATTATATTT
66 ATCAATGATTTACAATTATATTT
10598354 TTATTAGTAATTTACTATTATATTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
1 TTATTAGTAATTTACTATTATATTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
10598419 ATCAATGATTTACAATTATATTT
66 ATCAATGATTTACAATTATATTT
10598442 TTA
1 TTA
10598445 CATATTTAGT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (88 bp):
TTATTAGTAATTTACTATTATATTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
ATCAATGATTTACAATTATATTT
Found at i:10598420 original size:19 final size:19
Alignment explanation
Indices: 10598356--10598420 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
10598346 TTATATTTTT
* * *
10598356 ATTAGTAATTTACTATTAT
1 ATTATTAATTTATTATTAA
10598375 ATTATTAATGATTTATT-TCTAA
1 ATTATT-A--ATTTATTAT-TAA
*
10598397 GTTATTAATTTATTATTAA
1 ATTATTAATTTATTATTAA
10598416 ATTAT
1 ATTAT
10598421 CAATGATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTATTAATTTATTATTAA
Found at i:10598465 original size:44 final size:44
Alignment explanation
Indices: 10598316--10598520 Score: 138
Period size: 44 Copynumber: 4.7 Consensus size: 44
10598306 TAAGTTATTA
* *
10598316 ATTTATTATTAAATTATCAATGATTTACAATTATATTTTTATTAGT
1 ATTTAGTATTATATTATCAATGATTTACAATTATATTTTTA--AGT
* * * * *
10598362 AATTTACTATTATATTATTAATGATTT--ATTTCTAAGTTATT-A--
1 -ATTTAGTATTATATTATCAATGATTTACAATTAT-A-TTTTTAAGT
* *
10598404 ATTTATTATTAAATTATCAATGATTTACAATTATATTTTTACA-T
1 ATTTAGTATTATATTATCAATGATTTACAATTATATTTTTA-AGT
* * * * *
10598448 ATTTAGTATTATGTTATCATTAATTTACTACTTA-ATTTTTAATT
1 ATTTAGTATTATATTATCAATGATTTAC-AATTATATTTTTAAGT
* * *
10598492 ATTTAGTA-CAAATTATCACTGATTTACAA
1 ATTTAGTATTATATTATCAATGATTTACAA
10598521 CTAAATTATC
Statistics
Matches: 125, Mismatches: 24, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
41 27 0.22
42 2 0.02
43 20 0.16
44 40 0.32
45 8 0.06
46 1 0.01
47 27 0.22
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (44 bp):
ATTTAGTATTATATTATCAATGATTTACAATTATATTTTTAAGT
Found at i:10598470 original size:88 final size:89
Alignment explanation
Indices: 10598266--10598471 Score: 323
Period size: 88 Copynumber: 2.3 Consensus size: 89
10598256 TATAACTAAG
*
10598266 TTATTAGTAATTTACTATTATGT-TATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAAT
1 TTATCAGTAATTTACTATTATGTATATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAAT
10598330 TATCAATGATTTACAATTATATTT
66 TATCAATGATTTACAATTATATTT
* *
10598354 TTATTAGTAATTTACTATTATAT-TATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAAT
1 TTATCAGTAATTTACTATTATGTATATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAAT
10598418 TATCAATGATTTACAATTATATTT
66 TATCAATGATTTACAATTATATTT
*
10598442 TTA-CA-T-ATTTAGTATTATGTTATCATTAAT
1 TTATCAGTAATTTACTATTATG-TAT-ATTAAT
10598472 TTACTACTTA
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
85 11 0.10
86 2 0.02
87 2 0.02
88 96 0.86
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (89 bp):
TTATCAGTAATTTACTATTATGTATATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAAT
TATCAATGATTTACAATTATATTT
Found at i:10598496 original size:88 final size:88
Alignment explanation
Indices: 10598266--10598520 Score: 286
Period size: 88 Copynumber: 2.9 Consensus size: 88
10598256 TATAACTAAG
* * * * * *
10598266 TTATTAGTAATTTACTATTATGTTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
1 TTATCAGTAATTTACTATTATATTATCAATAATTTACTACTAAGTTATTAATTTATTATTAAATT
10598331 ATCAATGATTTACAATTATATTT
66 ATCAATGATTTACAATTATATTT
* * * * *
10598354 TTATTAGTAATTTACTATTATATTATTAATGATTTATTTCTAAGTTATTAATTTATTATTAAATT
1 TTATCAGTAATTTACTATTATATTATCAATAATTTACTACTAAGTTATTAATTTATTATTAAATT
10598419 ATCAATGATTTACAATTATATTT
66 ATCAATGATTTACAATTATATTT
* * * * *
10598442 TTA-CA-T-ATTTAGTATTATGTTATCATTAATTTACTACTTAA-TTTTTAA-TTATTTAGTACA
1 TTATCAGTAATTTACTATTATATTATCAATAATTTACTAC-TAAGTTATTAATTTA-TTA-T-TA
*
10598502 AATTATCACTGATTTACAA
62 AATTATCAATGATTTACAA
10598521 CTAAATTATC
Statistics
Matches: 151, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
84 3 0.02
85 33 0.22
86 5 0.03
87 20 0.13
88 90 0.60
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.53
Consensus pattern (88 bp):
TTATCAGTAATTTACTATTATATTATCAATAATTTACTACTAAGTTATTAATTTATTATTAAATT
ATCAATGATTTACAATTATATTT
Found at i:10598797 original size:22 final size:22
Alignment explanation
Indices: 10598758--10598840 Score: 85
Period size: 22 Copynumber: 3.8 Consensus size: 22
10598748 ATTGAAACTG
10598758 ATTTACTATTAAATTATTAATA
1 ATTTACTATTAAATTATTAATA
* *
10598780 ATTTACTATTAAATTATTATTG
1 ATTTACTATTAAATTATTAATA
* * * *
10598802 ATTTATTACTAAGTTATCAATA
1 ATTTACTATTAAATTATTAATA
* * *
10598824 ATTAACTAGTAAGTTAT
1 ATTTACTATTAAATTAT
10598841 CACCTTTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (22 bp):
ATTTACTATTAAATTATTAATA
Found at i:10598804 original size:44 final size:44
Alignment explanation
Indices: 10598756--10598840 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
10598746 AAATTGAAAC
* * * *
10598756 TGATTTACTATTAAATTATTAATAATTTACTATTAAATTATTAT
1 TGATTTACTACTAAATTATCAATAATTAACTAGTAAATTATTAT
* * *
10598800 TGATTTATTACTAAGTTATCAATAATTAACTAGTAAGTTAT
1 TGATTTACTACTAAATTATCAATAATTAACTAGTAAATTAT
10598841 CACCTTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (44 bp):
TGATTTACTACTAAATTATCAATAATTAACTAGTAAATTATTAT
Found at i:10598807 original size:11 final size:11
Alignment explanation
Indices: 10598758--10598809 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
10598748 ATTGAAACTG
*
10598758 ATTTACTATTA
1 ATTTATTATTA
* *
10598769 AATTATTAATA
1 ATTTATTATTA
*
10598780 ATTTACTATTA
1 ATTTATTATTA
* *
10598791 AATTATTATTG
1 ATTTATTATTA
10598802 ATTTATTA
1 ATTTATTA
10598810 CTAAGTTATC
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (11 bp):
ATTTATTATTA
Found at i:10598997 original size:22 final size:22
Alignment explanation
Indices: 10598967--10599033 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
10598957 TACTAAAAAA
10598967 ATCAATTATTTACTATTAAATT
1 ATCAATTATTTACTATTAAATT
* * *
10598989 ATCATTTATTTATTGTTAAATT
1 ATCAATTATTTACTATTAAATT
* * *
10599011 ATTAATGA-TTACTATTAAGTT
1 ATCAATTATTTACTATTAAATT
10599032 AT
1 AT
10599034 ATTGAATAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 12 0.33
22 24 0.67
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.52
Consensus pattern (22 bp):
ATCAATTATTTACTATTAAATT
Found at i:10599613 original size:24 final size:25
Alignment explanation
Indices: 10599586--10599643 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
10599576 TAATGGGAAT
*
10599586 AAATTTAATAAATAA-AATTTATAA
1 AAATTTAATAAACAACAATTTATAA
* * *
10599610 AAATTAAATAGACAACAATTTTTAA
1 AAATTTAATAAACAACAATTTATAA
10599635 AAATATTAA
1 AAAT-TTAA
10599644 ATTTACAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 12 0.44
25 12 0.44
26 3 0.11
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (25 bp):
AAATTTAATAAACAACAATTTATAA
Found at i:10601480 original size:17 final size:17
Alignment explanation
Indices: 10601435--10601480 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
10601425 AATTTGTCTT
* *
10601435 TTATCTAAAAAATTTTA
1 TTATATAAAAATTTTTA
* *
10601452 TTATACATAAATTTTTA
1 TTATATAAAAATTTTTA
10601469 TTATATAAAAAT
1 TTATATAAAAAT
10601481 ATTAAAATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATATAAAAATTTTTA
Found at i:10602044 original size:54 final size:54
Alignment explanation
Indices: 10601943--10602046 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
10601933 AATTTTGGAC
* ** *
10601943 ATTACCAATGGAAATTTCATTGGTAAAACCATCGATAAAAATGAAAATTTTTTT
1 ATTACCAATGAAAATTTCATCAGTAAAACCATCGATAAAAATAAAAATTTTTTT
* **
10601997 ATTACCAATGAAAAATTTCATCAGTAAAACTATCTCT-AAAATAAAAATTT
1 ATTACCAATG-AAAATTTCATCAGTAAAACCATCGATAAAAATAAAAATTT
10602047 CAAAACCTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 22 0.52
55 20 0.48
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (54 bp):
ATTACCAATGAAAATTTCATCAGTAAAACCATCGATAAAAATAAAAATTTTTTT
Found at i:10602843 original size:39 final size:38
Alignment explanation
Indices: 10602777--10602867 Score: 101
Period size: 39 Copynumber: 2.4 Consensus size: 38
10602767 ATTTGAGGTT
10602777 ATAATTTATATATTACCAATAACTATATCTCATTTTGAA
1 ATAATTTATATATTACCAATAACTATAT-TCATTTTGAA
* ** ** **
10602816 GTAATTTATATATTATTAATATTTATATTTGTTTTGAA
1 ATAATTTATATATTACCAATAACTATATTCATTTTGAA
*
10602854 ATAGTTTATATATT
1 ATAATTTATATATT
10602868 TGATAGTTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
38 20 0.47
39 23 0.53
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.52
Consensus pattern (38 bp):
ATAATTTATATATTACCAATAACTATATTCATTTTGAA
Found at i:10603214 original size:326 final size:323
Alignment explanation
Indices: 10602613--10603214 Score: 949
Period size: 326 Copynumber: 1.9 Consensus size: 323
10602603 TCGGGTCATG
10602613 TTATATATTTATTAACTTTTAGATATATAAGATTTAGGATTGGTTAATTTGGGTTTAATGTGTAT
1 TTATATATTTATTAACTTTTAGATATATAAGATTTAGGATTGGTTAATTTGGGTTTAATGTGTAT
* * *
10602678 AAATATTTATATATTTTTGTATGGATATCTTATATTTAATATTTTCTAGATTTTAATAATAATTA
66 AAATATATATATATATTTGTATAGATATCTTATATTTAATATTTTCTAGATTTTAATAATAATTA
* * *
10602743 TATAATTTAAAATTATTTATATTGATTTGAGGTTATAATTTATATATTACCAATAACTATATCTC
131 TAGAATATAAAATTAGTTATATTGATTTGAGGTTATAATTTATATATTACCAATAACTATATCTC
* *
10602808 ATTTTGAAGTAATTTATATATTATTAATATTTATATTTGTTTTGAAATAGTTTATATATTTGATA
196 ATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATATTTGATA
10602873 GTTTAGGGAAATTTATTGAAATATTGTGGTTTTATTGTATTAATCAAACTTAATATAAATAAA
261 GTTTAGGGAAATTTATTGAAATATTGTGGTTTTATTGTATTAATCAAACTTAATATAAATAAA
* * * *
10602936 TTATTTATTTATTAATTTTTAGATATATAAGATTTAGGGTTGGTTAATTTGGGTTTGATGTGTAT
1 TTATATATTTATTAACTTTTAGATATATAAGATTTAGGATTGGTTAATTTGGGTTTAATGTGTA-
* *
10603001 TAATATATATATATATATTTGTATAGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAAT
65 TAA-ATATATATATATATTTGTATAGATATCTTATATTTAATATTTTCTAGATTTTAATAATAAT
* *
10603066 TATAGAA-ATAAAAGTTAGTTATATTTGATTTGAGGTTATAATTTATATATTACTAATAGCTA-A
129 TATAGAATATAAAA-TTAGTTATA-TTGATTTGAGGTTATAATTTATATATTACCAATAACTATA
* *
10603129 TGAGT-ATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATGTAT
192 T--CTCATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATAT
* *
10603193 TTGATAGTTTAGTGCAATTTAT
255 TTGATAGTTTAGGGAAATTTAT
10603215 ATATTACTGT
Statistics
Matches: 253, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
323 60 0.24
324 8 0.03
325 72 0.28
326 112 0.44
327 1 0.00
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (323 bp):
TTATATATTTATTAACTTTTAGATATATAAGATTTAGGATTGGTTAATTTGGGTTTAATGTGTAT
AAATATATATATATATTTGTATAGATATCTTATATTTAATATTTTCTAGATTTTAATAATAATTA
TAGAATATAAAATTAGTTATATTGATTTGAGGTTATAATTTATATATTACCAATAACTATATCTC
ATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATATTTGATA
GTTTAGGGAAATTTATTGAAATATTGTGGTTTTATTGTATTAATCAAACTTAATATAAATAAA
Found at i:10605150 original size:59 final size:58
Alignment explanation
Indices: 10605024--10605234 Score: 300
Period size: 60 Copynumber: 3.6 Consensus size: 58
10605014 GTTCCTTAAA
* * *
10605024 TATTTTTGA-AGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGGTTTTTAAAAAATA
1 TATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAA-GTTTTCAAAAAA-G
* *
10605084 TATTTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCCAAAAAAG
1 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTCAAAAAAG
*
10605143 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCAAAAATAG
1 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCAAAAA-AG
*
10605202 -ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
1 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT
10605235 TCTGTACAAA
Statistics
Matches: 139, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
58 41 0.29
59 47 0.34
60 50 0.36
61 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (58 bp):
TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCAAAAAAG
Found at i:10605174 original size:27 final size:27
Alignment explanation
Indices: 10605144--10605234 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
10605134 CCAAAAAAGT
10605144 ATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTTGAGAAAAAGTTGAAAGTATCA
* * * *
10605171 ATTTTTCTTAAAAATAAGTTTTCAAA-AAT-A
1 A-TTTT-TGAGAAA-AAG--TTGAAAGTATCA
*
10605201 GATTTTTGAGGAAAAGTTGAAAGTATCA
1 -ATTTTTGAGAAAAAGTTGAAAGTATCA
10605229 ATTTTT
1 ATTTTT
10605235 TCTGTACAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 16
0.65 0.12 0.22
Matches are distributed among these distances:
26 5 0.11
27 9 0.19
28 8 0.17
29 9 0.19
30 8 0.17
31 3 0.06
32 5 0.11
ACGTcount: A:0.42, C:0.04, G:0.14, T:0.40
Consensus pattern (27 bp):
ATTTTTGAGAAAAAGTTGAAAGTATCA
Found at i:10605237 original size:59 final size:59
Alignment explanation
Indices: 10605025--10605234 Score: 300
Period size: 59 Copynumber: 3.6 Consensus size: 59
10605015 TTCCTTAAAT
* * * *
10605025 ATTTTTGA-AGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGGTTTTTAAAAAATAT
1 ATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAA-GCTTTTCAAAAATAG
* *
10605085 ATTTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCCAAAAA-AG
1 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTCAAAAATAG
*
10605143 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAG-TTTTCAAAAATAG
1 -ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTCAAAAATAG
*
10605202 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
1 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT
10605235 TCTGTACAAA
Statistics
Matches: 137, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
58 42 0.31
59 54 0.39
60 40 0.29
61 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (59 bp):
ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTCAAAAATAG
Found at i:10609226 original size:8 final size:8
Alignment explanation
Indices: 10609188--10609341 Score: 111
Period size: 8 Copynumber: 18.5 Consensus size: 8
10609178 GAAAGATGGG
*
10609188 TGAACAAA
1 TGAAAAAA
*
10609196 TGAAAGAA
1 TGAAAAAA
* *
10609204 GGCAAAAA
1 TGAAAAAA
10609212 -GAGAAAAA
1 TGA-AAAAA
10609220 TGAAAAAACAA
1 TG--AAAA-AA
10609231 TAGAAAAAAA
1 T-GAA-AAAA
10609241 TGAAAAAA
1 TGAAAAAA
10609249 TGAAAAAAA
1 TG-AAAAAA
10609258 TGAAAAAA
1 TGAAAAAA
10609266 TGAAAAAA
1 TGAAAAAA
10609274 TGAAAAAA
1 TGAAAAAA
10609282 TGAAAAAA
1 TGAAAAAA
10609290 --AAAAAA
1 TGAAAAAA
*
10609296 AGAATGAAAA
1 TGAA--AAAA
*
10609306 TTGAAAAAG
1 -TGAAAAAA
10609315 TG-AAAAA
1 TGAAAAAA
10609322 TGAAAAGAA
1 TGAAAA-AA
*
10609331 -GAGAAAA
1 TGAAAAAA
10609338 TGAA
1 TGAA
10609342 TACTCAAATT
Statistics
Matches: 119, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
6 6 0.05
7 9 0.08
8 65 0.55
9 17 0.14
10 12 0.10
11 9 0.08
12 1 0.01
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.10
Consensus pattern (8 bp):
TGAAAAAA
Found at i:10609227 original size:17 final size:17
Alignment explanation
Indices: 10609207--10609341 Score: 95
Period size: 17 Copynumber: 8.0 Consensus size: 17
10609197 GAAAGAAGGC
10609207 AAAAAGAGAAAAATGAAAA
1 AAAAAGAGAAAAATG--AA
*
10609226 AACAATAGAAAAAAATGAA
1 AA-AA-AGAGAAAAATGAA
* *
10609245 AAAATGAAAAAAATGAA
1 AAAAAGAGAAAAATGAA
*
10609262 AAAATGA-AAAAATGAA
1 AAAAAGAGAAAAATGAA
*
10609278 AAAATGA-AAAAA--AA
1 AAAAAGAGAAAAATGAA
*
10609292 AAAAAGAATGAAAATTG--
1 AAAAAG-A-GAAAAATGAA
*
10609309 AAAAAGTGAAAAATGAA
1 AAAAAGAGAAAAATGAA
*
10609326 AAGAAGAG-AAAATGAA
1 AAAAAGAGAAAAATGAA
10609342 TACTCAAATT
Statistics
Matches: 99, Mismatches: 8, Indels: 21
0.77 0.06 0.16
Matches are distributed among these distances:
14 7 0.07
15 8 0.08
16 29 0.29
17 35 0.35
18 2 0.02
19 6 0.06
20 2 0.02
21 10 0.10
ACGTcount: A:0.74, C:0.01, G:0.15, T:0.10
Consensus pattern (17 bp):
AAAAAGAGAAAAATGAA
Found at i:10609277 original size:33 final size:34
Alignment explanation
Indices: 10609235--10609341 Score: 134
Period size: 33 Copynumber: 3.3 Consensus size: 34
10609225 AAACAATAGA
10609235 AAAAAATGAAAAAATGAAAAAAATGAAAA-AATG
1 AAAAAATGAAAAAATGAAAAAAATGAAAAGAATG
**
10609268 AAAAAATGAAAAAATGAAAAAAAAAAAAAGAATG
1 AAAAAATGAAAAAATGAAAAAAATGAAAAGAATG
* *
10609302 -AAAATTGAAAAAGTG--AAAAATGAAAAGAA-G
1 AAAAAATGAAAAAATGAAAAAAATGAAAAGAATG
*
10609332 AGAAAATGAA
1 AAAAAATGAA
10609342 TACTCAAATT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.02
31 19 0.30
33 40 0.62
34 4 0.06
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (34 bp):
AAAAAATGAAAAAATGAAAAAAATGAAAAGAATG
Found at i:10611150 original size:43 final size:42
Alignment explanation
Indices: 10610995--10611167 Score: 183
Period size: 41 Copynumber: 4.1 Consensus size: 42
10610985 ATGATTGTCA
* * *
10610995 AGGAGTAATTT-TTTTTTCAAAGTTTCGTT--GCCTCTGTTTAG
1 AGGAGCAATTTATTTTTTTAAAG-TT-GTTGAGCCTCTGATTAG
* * * * *
10611036 AGGAGCAATTTA-CTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTTTAAAGTTGTTGAGCCTCTGATTAG
* *
10611077 AGGAGCAATTTATTTTTTTAAAGTCGTTGAGCCTCTGATTAT
1 AGGAGCAATTTATTTTTTTAAAGTTGTTGAGCCTCTGATTAG
* *
10611119 ATGAGCCATTTATTTTTTTAAAAGTTGTTGAGCCTCTGATTAG
1 AGGAGCAATTTATTTTTTT-AAAGTTGTTGAGCCTCTGATTAG
10611162 AGGAGC
1 AGGAGC
10611168 TTTGTTTATA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 43 0.38
42 39 0.35
43 26 0.23
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (42 bp):
AGGAGCAATTTATTTTTTTAAAGTTGTTGAGCCTCTGATTAG
Found at i:10611191 original size:45 final size:42
Alignment explanation
Indices: 10611002--10611207 Score: 168
Period size: 41 Copynumber: 4.9 Consensus size: 42
10610992 TCAAGGAGTA
* *
10611002 ATTT-TTTTTTCAAAGTTTCGTT--GCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTTCAAAG-TT-GTTGAGCCTCTGATTAGAGGAGCT
* * * * *
10611043 ATTTA-CTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCT
* * * * *
10611084 ATTTATTTTTTTAAAGTCGTTGAGCCTCTGATTATATGAGCC
1 ATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCT
*
10611126 ATTTATTTTTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTT
1 ATTTA-TTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGC--T
* * * * *
10611171 GTTTATATTTCTCAAAGTTGTTAAGCTTCTGCTTAGA
1 ATTTAT-TTTTTCAAAGTTGTTGAGCCTCTGATTAGA
10611208 AAAGCTTTGA
Statistics
Matches: 135, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 37 0.27
42 32 0.24
43 32 0.24
44 1 0.01
45 29 0.21
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (42 bp):
ATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCT
Found at i:10613321 original size:27 final size:27
Alignment explanation
Indices: 10613290--10613379 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
10613280 TCTAAAAAAT
10613290 ATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTTGAGAAAAAGTTGAAAGTATCA
* * * *
10613317 ATTTTTCTTA-AAAATAGTTTTCAAA-AATGA
1 A-TTTT-TGAGAAAA-AG--TTGAAAGTATCA
10613347 ATTTTTGAGGAAAAA-TTGAAAGTATCA
1 ATTTTTGA-GAAAAAGTTGAAAGTATCA
10613374 ATTTTT
1 ATTTTT
10613380 TTTGTACAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
26 5 0.11
27 10 0.21
28 10 0.21
29 9 0.19
30 8 0.17
31 5 0.11
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTTGAGAAAAAGTTGAAAGTATCA
Found at i:10613372 original size:57 final size:59
Alignment explanation
Indices: 10613169--10613379 Score: 283
Period size: 58 Copynumber: 3.6 Consensus size: 59
10613159 GGTTCCTTAA
*
10613169 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAATTTTTTCTAAAAAAT
1 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAA-GTTTTCT-AAAAAT
* *
10613230 ATATTTTTGA-AGAAAAGTTGAAAGTATTAA-TTTTCTTTGAAAATAAGCTTTCTAAAAA-
1 ATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAGTTTTCTAAAAAT
*
10613288 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AGTTTTC-AAAAAT
1 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAAAAAT
10613345 GA-ATTTTTGAGGAAAAA-TTGAAAGTATCAATTTTT
1 -ATATTTTTGA-GAAAAAGTTGAAAGTATCAATTTTT
10613380 TTTGTACAAA
Statistics
Matches: 137, Mismatches: 6, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
56 5 0.04
57 32 0.23
58 41 0.30
59 11 0.08
60 11 0.08
61 37 0.27
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.41
Consensus pattern (59 bp):
ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAAAAAT
Found at i:10619962 original size:13 final size:13
Alignment explanation
Indices: 10619932--10619969 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
10619922 AATTATTGCA
10619932 TATTTTAGTTTGTG
1 TATTTT-GTTTGTG
10619946 -ATTTTGTTTGTG
1 TATTTTGTTTGTG
*
10619958 TATTTTGATTGT
1 TATTTTGTTTGT
10619970 TGATGAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.13, C:0.00, G:0.21, T:0.66
Consensus pattern (13 bp):
TATTTTGTTTGTG
Found at i:10620816 original size:18 final size:18
Alignment explanation
Indices: 10620783--10620817 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10620773 AAGGTTTGAA
*
10620783 AATAATTACAAGTTTTTG
1 AATAATTACAAATTTTTG
*
10620801 AATAATTATAAATTTTT
1 AATAATTACAAATTTTT
10620818 TTATTTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (18 bp):
AATAATTACAAATTTTTG
Found at i:10620907 original size:21 final size:19
Alignment explanation
Indices: 10620878--10620950 Score: 56
Period size: 20 Copynumber: 3.7 Consensus size: 19
10620868 GAAAATGTAC
10620878 TATTATCGACAAAATTTTTAT
1 TATTATCGAC-AAATTTTT-T
* *
10620899 TATTTTCGACGAATTTTTT
1 TATTATCGACAAATTTTTT
* * * *
10620918 TATTACCAATGAAATTTTAT
1 TATTATCGA-CAAATTTTTT
*
10620938 TATTACCGACAAA
1 TATTATCGACAAA
10620951 AAAATTCTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
19 10 0.24
20 22 0.54
21 9 0.22
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (19 bp):
TATTATCGACAAATTTTTT
Found at i:10621112 original size:87 final size:87
Alignment explanation
Indices: 10620948--10621113 Score: 228
Period size: 87 Copynumber: 1.9 Consensus size: 87
10620938 TATTACCGAC
* * * * ** *
10620948 AAAAAAATTCTTTTTTGACCATTTTTATGGTTATTATCGACAGTTATACTGATGAAATTTTATTA
1 AAAAAAATTCTTTTTAGACAATTTTCATAGTTATTATCGACAGTTATACCAATAAAATTTTATTA
*
10621013 TTATCGATGAAATTACTGATGA
66 TTATCGACGAAATTACTGATGA
10621035 AAAAAAATTCTTTTGTAG-CAATTTTCATAGTTATTATCGACAGTTATACCAATAAAATTTTATT
1 AAAAAAATTCTTTT-TAGACAATTTTCATAGTTATTATCGACAGTTATACCAATAAAATTTTATT
10621099 ATTA-CGAACGAAATT
65 ATTATCG-ACGAAATT
10621114 TTAATTATTA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
86 2 0.03
87 65 0.94
88 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42
Consensus pattern (87 bp):
AAAAAAATTCTTTTTAGACAATTTTCATAGTTATTATCGACAGTTATACCAATAAAATTTTATTA
TTATCGACGAAATTACTGATGA
Found at i:10624611 original size:28 final size:28
Alignment explanation
Indices: 10624531--10624616 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
10624521 TATTTTTAAT
* *
10624531 TTTTA-ATTAAAAAATAATTTTAAATTAA
1 TTTTATATTTAAACATAATTTTAAA-TAA
* ** *
10624559 TTTTATTTTTAATTATAA-TTAAAATAA
1 TTTTATATTTAAACATAATTTTAAATAA
*
10624586 TTTTGATATTTAAACA-AATTTTAAATTA
1 TTTT-ATATTTAAACATAATTTTAAATAA
10624614 TTT
1 TTT
10624617 AATTAATAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
27 9 0.20
28 28 0.62
29 8 0.18
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (28 bp):
TTTTATATTTAAACATAATTTTAAATAA
Found at i:10627410 original size:17 final size:17
Alignment explanation
Indices: 10627390--10627423 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10627380 GATTTGATAG
10627390 TGTTGAGCTTTTGAATT
1 TGTTGAGCTTTTGAATT
10627407 TGTTGAGCTTTTGAATT
1 TGTTGAGCTTTTGAATT
10627424 AAAAACCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.24, T:0.53
Consensus pattern (17 bp):
TGTTGAGCTTTTGAATT
Found at i:10631612 original size:28 final size:27
Alignment explanation
Indices: 10631581--10631642 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 27
10631571 AGATTACATT
*
10631581 TTAATTATAGATA-AATATAGTATTTTTA
1 TTAATTAT-GATATAA-ATAATATTTTTA
10631609 TTAAATTATGATATTAAATAATATTTTTA
1 TT-AATTATGATA-TAAATAATATTTTTA
10631638 TTAAT
1 TTAAT
10631643 ACAATACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
28 9 0.30
29 19 0.63
30 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.52
Consensus pattern (27 bp):
TTAATTATGATATAAATAATATTTTTA
Found at i:10632010 original size:18 final size:16
Alignment explanation
Indices: 10631987--10632038 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 16
10631977 TTATCTAATT
10631987 AAAAAATAGTAAAAGAAG
1 AAAAAATAGT-AAA-AAG
10632005 AAAAAATAGTAAAAAG
1 AAAAAATAGTAAAAAG
*
10632021 -AAAAA-AGAAAAAAG
1 AAAAAATAGTAAAAAG
10632035 AAAA
1 AAAA
10632039 GATGAAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 8 0.25
15 8 0.25
16 3 0.09
17 3 0.09
18 10 0.31
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (16 bp):
AAAAAATAGTAAAAAG
Found at i:10632384 original size:23 final size:23
Alignment explanation
Indices: 10632358--10632401 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10632348 AAAAATTTAT
*
10632358 TCTCTCTAAAACTAAACTAATTC
1 TCTCTCTAAAACCAAACTAATTC
*
10632381 TCTCTCTAAATCCAAACTAAT
1 TCTCTCTAAAACCAAACTAAT
10632402 CCACAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCTCTCTAAAACCAAACTAATTC
Found at i:10633187 original size:21 final size:21
Alignment explanation
Indices: 10633159--10633210 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
10633149 TCAGAGAAAA
10633159 AAGATGAATTTTTAGAAAGAG
1 AAGATGAATTTTTAGAAAGAG
* *
10633180 ATGATGAATTTTTAGAGAGAG
1 AAGATGAATTTTTAGAAAGAG
*
10633201 AAGATTAATT
1 AAGATGAATT
10633211 AAGATGAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (21 bp):
AAGATGAATTTTTAGAAAGAG
Found at i:10633447 original size:22 final size:22
Alignment explanation
Indices: 10633422--10633487 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
10633412 AAATATCTAT
10633422 AAAAAAAGAAAAAGAT-AAAAA
1 AAAAAAAGAAAAAGATAAAAAA
*
10633443 AAAAATAGAGAAAAGATAAAAAA
1 AAAAAAAGA-AAAAGATAAAAAA
*
10633466 AAAAAAAGAAAAAGAGAAAAAA
1 AAAAAAAGAAAAAGATAAAAAA
10633488 TTAAGAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 8 0.20
22 19 0.47
23 13 0.32
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAAAAGAAAAAGATAAAAAA
Found at i:10633496 original size:29 final size:28
Alignment explanation
Indices: 10633432--10633496 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
10633422 AAAAAAAGAA
* * *
10633432 AAAGATAAAAAAAAAATAGAGAAAAGAT
1 AAAGAAAAAAAAAAAAAAGAGAAAAAAT
*
10633460 AAAAAAAAAAAAAGAAAAAGAGAAAAAAT
1 AAAGAAAAAAAAA-AAAAAGAGAAAAAAT
*
10633489 TAAGAAAA
1 AAAGAAAA
10633497 TAACTTGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.37
29 19 0.63
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (28 bp):
AAAGAAAAAAAAAAAAAAGAGAAAAAAT
Found at i:10635338 original size:17 final size:18
Alignment explanation
Indices: 10635316--10635357 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
10635306 ATGGCCCACA
10635316 TTAAAAAGTTA-AAATA-T
1 TTAAAAA-TTATAAATATT
10635333 TTAAAAATTATAAATATT
1 TTAAAAATTATAAATATT
10635351 TTAAAAA
1 TTAAAAA
10635358 ATAAAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 12 0.52
18 8 0.35
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAAAATTATAAATATT
Found at i:10635346 original size:18 final size:17
Alignment explanation
Indices: 10635316--10635357 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
10635306 ATGGCCCACA
10635316 TTAAAAAGTTAAA-ATAT
1 TTAAAAAGTTAAATAT-T
*
10635333 TTAAAAATTATAAATATT
1 TTAAAAAGT-TAAATATT
10635351 TTAAAAA
1 TTAAAAA
10635358 ATAAAAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 12 0.55
19 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
TTAAAAAGTTAAATATT
Found at i:10637609 original size:15 final size:17
Alignment explanation
Indices: 10637589--10637626 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
10637579 CTTGGTATTA
*
10637589 TTATTTT-TTTTA-TGT
1 TTATTTTATTTAATTGT
10637604 TTATTTTATTTAATTGT
1 TTATTTTATTTAATTGT
10637621 TTATTT
1 TTATTT
10637627 AGTTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (17 bp):
TTATTTTATTTAATTGT
Found at i:10637615 original size:4 final size:4
Alignment explanation
Indices: 10637603--10637646 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
10637593 TTTTTTTATG
* * *
10637603 TTTA TTTTA TTTA ATTG TTTA TTTA GTTA TTTA TTTA TTTA TTT
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
10637647 TTAAATACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:10642864 original size:16 final size:16
Alignment explanation
Indices: 10642843--10642873 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10642833 TAGATAATAA
*
10642843 ATGAAGAATATGAAAT
1 ATGAAGAAGATGAAAT
10642859 ATGAAGAAGATGAAA
1 ATGAAGAAGATGAAA
10642874 GTGGCTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (16 bp):
ATGAAGAAGATGAAAT
Found at i:10646502 original size:6 final size:6
Alignment explanation
Indices: 10646491--10646522 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
10646481 TTTGCTTAAG
10646491 AAAACA AAAACA AAAACA AAAACA AAAA-A AAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAA
10646523 GAGGATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:10647468 original size:24 final size:25
Alignment explanation
Indices: 10647426--10647474 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
10647416 GTCGACAAAA
* *
10647426 ACTAAGTGTTACATTATGG-GAGTC
1 ACTAAGTGCTACATGATGGAGAGTC
*
10647450 ACTAAGTGCTATATGATGGAGAGTC
1 ACTAAGTGCTACATGATGGAGAGTC
10647475 TCCTTTAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (25 bp):
ACTAAGTGCTACATGATGGAGAGTC
Found at i:10647982 original size:44 final size:44
Alignment explanation
Indices: 10647931--10648037 Score: 137
Period size: 43 Copynumber: 2.4 Consensus size: 44
10647921 GCTTATTTTT
*
10647931 CATTTCTTAATTTAAAATTT-ATTGAGCCTATGTATAAAGAAGTC
1 CATTTCTTAATTTAAAATTTGATT-AGCCTATATATAAAGAAGTC
* * * *
10647975 CATTTCTTAATAT-AAATTTGCTTAGCCTCTATATAAAGGAGTC
1 CATTTCTTAATTTAAAATTTGATTAGCCTATATATAAAGAAGTC
10648018 CATTTCTTTAATTTAAAATT
1 CATTTC-TTAATTTAAAATT
10648038 GTTGAACCTT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 29 0.54
44 20 0.37
45 5 0.09
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (44 bp):
CATTTCTTAATTTAAAATTTGATTAGCCTATATATAAAGAAGTC
Found at i:10648053 original size:87 final size:88
Alignment explanation
Indices: 10647931--10648097 Score: 207
Period size: 87 Copynumber: 1.9 Consensus size: 88
10647921 GCTTATTTTT
*
10647931 CATTTCTTAATTTAAAATTTATTGAGCCTATGTATAAAGAAG-TCCATTTCTTAATATAAA-TTT
1 CATTTCTTAATTTAAAATTTATTGAACCTATGTATAAAGAAGCT-CATTTCTTAATATAAAGTTT
10647994 GCTTAGCCTCTATATAAAGGAGTC
65 GCTTAGCCTCTATATAAAGGAGTC
* * * * *
10648018 CATTTCTTTAATTTAAAA-TTGTTGAACCT-TGGTATAGAGGAGCTCATTTTTTAATTTAAAGTT
1 CATTTC-TTAATTTAAAATTTATTGAACCTAT-GTATAAAGAAGCTCATTTCTTAATATAAAGTT
**
10648081 TTTTTAGCCTCTATATA
64 TGCTTAGCCTCTATATA
10648098 GAAAGCCTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
86 1 0.01
87 38 0.56
88 29 0.43
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.44
Consensus pattern (88 bp):
CATTTCTTAATTTAAAATTTATTGAACCTATGTATAAAGAAGCTCATTTCTTAATATAAAGTTTG
CTTAGCCTCTATATAAAGGAGTC
Found at i:10648098 original size:44 final size:42
Alignment explanation
Indices: 10647930--10648120 Score: 125
Period size: 43 Copynumber: 4.4 Consensus size: 42
10647920 AGCTTATTTT
* * * * *
10647930 TCATTTCTTAATTTAAAATTTATTGAGCCTATGTATAAAGAAG
1 TCATTTTTTAATTT-AAATTTGTTTAGCCTCTATATAAAGAAG
* * * *
10647973 TCCATTTCTTAATATAAATTTGCTTAGCCTCTATATAAAGGAG
1 T-CATTTTTTAATTTAAATTTGTTTAGCCTCTATATAAAGAAG
* * * * * *
10648016 TCCATTTCTTTAATTTAAAATTGTTGAACCT-TGGTATAGAGGAG
1 T-CATTT-TTTAATTTAAATTTGTTTAGCCTCT-ATATAAAGAAG
* *
10648060 CTCATTTTTTAATTTAAAGTTTTTTTAGCCTCTATATAGA-AAG
1 -TCATTTTTTAATTTAAA-TTTGTTTAGCCTCTATATAAAGAAG
* *
10648103 CCTATTTTTTAACTTAAA
1 TC-ATTTTTTAATTTAAA
10648121 ATTCTTTTTA
Statistics
Matches: 118, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 58 0.49
44 57 0.48
45 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (42 bp):
TCATTTTTTAATTTAAATTTGTTTAGCCTCTATATAAAGAAG
Found at i:10648259 original size:51 final size:51
Alignment explanation
Indices: 10648165--10648263 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
10648155 TAGATGAGTC
* * * * *
10648165 ATTTAAATTTTTTTAAGTTGTTGAGCTTCTGGTTAAAGGAGTCTATTTTCT
1 ATTTAAAGTTTTTAAAGTTGTTGAACCTCAGGTTAAAGGAGTCTATTTTCT
* * *
10648216 ATTTAAAGTTTTTAAAGTTGTTGAACCTCAGTTTAGAGTAGTCTATTT
1 ATTTAAAGTTTTTAAAGTTGTTGAACCTCAGGTTAAAGGAGTCTATTT
10648264 CCTAATTCAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.26, C:0.08, G:0.17, T:0.48
Consensus pattern (51 bp):
ATTTAAAGTTTTTAAAGTTGTTGAACCTCAGGTTAAAGGAGTCTATTTTCT
Found at i:10648554 original size:24 final size:24
Alignment explanation
Indices: 10648526--10648582 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
10648516 ATTAACTTTG
10648526 ATTTAAATTTTA-ATATGATGTT-A
1 ATTTAAATTTTAGATATGAT-TTAA
* * *
10648549 ATTTTAATTTTAGTTTTGATTTAA
1 ATTTAAATTTTAGATATGATTTAA
10648573 ATTTAAATTT
1 ATTTAAATTT
10648583 AAATTTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 13 0.46
24 15 0.54
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (24 bp):
ATTTAAATTTTAGATATGATTTAA
Found at i:10648575 original size:18 final size:18
Alignment explanation
Indices: 10648548--10648600 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
10648538 ATATGATGTT
* *
10648548 AATTTTAATTTTAGTTTT
1 AATTTAAATTTTAGTTTA
* * *
10648566 GATTTAAATTTAAATTTA
1 AATTTAAATTTTAGTTTA
*
10648584 AATTTAAATTTTGGTTT
1 AATTTAAATTTTAGTTT
10648601 CTAGCTTTTA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (18 bp):
AATTTAAATTTTAGTTTA
Found at i:10648582 original size:12 final size:12
Alignment explanation
Indices: 10648567--10648594 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10648557 TTTAGTTTTG
10648567 ATTTAAATTTAA
1 ATTTAAATTTAA
10648579 ATTTAAATTTAA
1 ATTTAAATTTAA
10648591 ATTT
1 ATTT
10648595 TGGTTTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTAAATTTAA
Found at i:10648658 original size:9 final size:9
Alignment explanation
Indices: 10648639--10648675 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
10648629 GTTAAAAGGT
10648639 AAAATTCAAA
1 AAAATT-AAA
10648649 AAAATT--A
1 AAAATTAAA
10648656 AAAATTAAA
1 AAAATTAAA
10648665 AAAATTAAA
1 AAAATTAAA
10648674 AA
1 AA
10648676 GAGGCGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
7 7 0.28
9 12 0.48
10 6 0.24
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATTAAA
Found at i:10648675 original size:16 final size:17
Alignment explanation
Indices: 10648639--10648675 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
10648629 GTTAAAAGGT
10648639 AAAATTCAAAAAAATTA
1 AAAATTCAAAAAAATTA
10648656 AAAATT-AAAAAAATTA
1 AAAATTCAAAAAAATTA
10648672 AAAA
1 AAAA
10648676 GAGGCGATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATTCAAAAAAATTA
Done.