Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 46 of 84
Found at i:10649632 original size:17 final size:17
Alignment explanation
Indices: 10649610--10649646 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10649600 ATCTTGGTAT
*
10649610 TTTTATTTTTATGTTTA
1 TTTTATTTTTATATTTA
*
10649627 TTTTATTTTTTTATTTA
1 TTTTATTTTTATATTTA
10649644 TTT
1 TTT
10649647 ACTTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTATATTTA
Found at i:10649643 original size:12 final size:12
Alignment explanation
Indices: 10649611--10649680 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 12
10649601 TCTTGGTATT
* *
10649611 TTTATTTTTATG
1 TTTATTTTTTTA
*
10649623 TTTATTTTATTTT
1 TTTATTTT-TTTA
*
10649636 TTTATTTATTTA
1 TTTATTTTTTTA
* *
10649648 CTTATTTTTTAA
1 TTTATTTTTTTA
* *
10649660 CTTATTTATTTA
1 TTTATTTTTTTA
10649672 TTTATTTTT
1 TTTATTTTT
10649681 AAATACTTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
12 37 0.80
13 9 0.20
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (12 bp):
TTTATTTTTTTA
Found at i:10649645 original size:4 final size:4
Alignment explanation
Indices: 10649623--10649678 Score: 60
Period size: 4 Copynumber: 13.8 Consensus size: 4
10649613 TATTTTTATG
* * *
10649623 TTTA TTTTA TTTT TTTA TTTA TTTA CTTA TTT- TTTAA CTTA TTTA TTTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT-A TTTA TTTA TTTA
10649672 TTTA TTT
1 TTTA TTT
10649679 TTAAATACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.07
4 34 0.79
5 6 0.14
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:10649954 original size:123 final size:121
Alignment explanation
Indices: 10649710--10649954 Score: 257
Period size: 123 Copynumber: 2.0 Consensus size: 121
10649700 TATTTAAATA
* ***
10649710 AAAAGGTCTTACCAACATATGGAGGGCTTGTATTTTATTTTCAAAATAAAGTTTTACAAACATAT
1 AAAAGGTCTTACCAACATATGGAGAGCTTGTATTTTATTAAAAAAATAAAGTTTTACAAACATAT
** * * * *
10649775 TAGAAAACCTTATGATTTTTTTAAAAAATTAATTTTTAAGGAAAAAAAAAAGTTTTC
66 TAGAAAACCTTATGATTTTAATAAAAAATCAAATTTGAA-GAAAAAAAAAAATTTTC
* *
10649832 AAAAGG-CTTTACCAACATATTGGAGAGTTTGTGATTTT-TTAAAAAAAT-AAGATTTTACCAAC
1 AAAAGGTC-TTACCAACATA-TGGAGAGCTTGT-ATTTTATTAAAAAAATAAAG-TTTTACAAAC
* *
10649894 ATATTAGAGAACCTTATGGGTTTTAAT-AAAAATCAAATTTGAA-AAAAATAAAATAATTTTC
62 ATATTAGAAAACCTTAT-GATTTTAATAAAAAATCAAATTTGAAGAAAAA-AAAA-AATTTTC
10649955 TTAATTCCTG
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
121 6 0.06
122 24 0.24
123 61 0.60
124 11 0.11
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.36
Consensus pattern (121 bp):
AAAAGGTCTTACCAACATATGGAGAGCTTGTATTTTATTAAAAAAATAAAGTTTTACAAACATAT
TAGAAAACCTTATGATTTTAATAAAAAATCAAATTTGAAGAAAAAAAAAAATTTTC
Found at i:10665568 original size:22 final size:19
Alignment explanation
Indices: 10665530--10665569 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 19
10665520 CGATCAAAAG
10665530 TTTTTTATTTTTTAATTTT
1 TTTTTTATTTTTTAATTTT
10665549 TTTTTTACTCTTTTTGAATTT
1 TTTTTTA-T-TTTTT-AATTT
10665570 AGATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 5 0.28
22 5 0.28
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTTTATTTTTTAATTTT
Found at i:10668374 original size:19 final size:18
Alignment explanation
Indices: 10668352--10668396 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
10668342 TTCTTTTTAC
*
10668352 TTTTTTTCAAGATTTTAAA
1 TTTTTTTCAA-ATTCTAAA
*
10668371 TTTTTTATGAAATTCTAAA
1 TTTTTT-TCAAATTCTAAA
10668390 TTTTTTT
1 TTTTTTT
10668397 GGTTATGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 19 0.83
20 3 0.13
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTTTTTCAAATTCTAAA
Found at i:10668713 original size:21 final size:22
Alignment explanation
Indices: 10668681--10668722 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
10668671 CTCCTTTTAT
10668681 TTTTTTGTTTTTTCA-TATTTTG
1 TTTTTTGTTTTTT-ATTATTTTG
10668703 TTTTTTG-TTTTTATTATTTT
1 TTTTTTGTTTTTTATTATTTT
10668723 TCTTCTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.05
21 11 0.58
22 7 0.37
ACGTcount: A:0.10, C:0.02, G:0.07, T:0.81
Consensus pattern (22 bp):
TTTTTTGTTTTTTATTATTTTG
Found at i:10669950 original size:15 final size:17
Alignment explanation
Indices: 10669932--10669968 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10669922 TTTTTTTCAT
10669932 TTTTTATG-TT-TTTCC
1 TTTTTATGTTTGTTTCC
10669947 TTTTTATGTTTGTTTCC
1 TTTTTATGTTTGTTTCC
10669964 TTTTT
1 TTTTT
10669969 TTCAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 2 0.10
17 10 0.50
ACGTcount: A:0.05, C:0.11, G:0.08, T:0.76
Consensus pattern (17 bp):
TTTTTATGTTTGTTTCC
Found at i:10669951 original size:17 final size:18
Alignment explanation
Indices: 10669926--10669969 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 18
10669916 GTCTTTTTTT
*
10669926 TTTCATTTTTTATG-TT-
1 TTTCCTTTTTTATGTTTG
10669942 TTTCC-TTTTTATGTTTG
1 TTTCCTTTTTTATGTTTG
10669959 TTTCCTTTTTT
1 TTTCCTTTTTT
10669970 TCAATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 8 0.33
16 6 0.25
17 5 0.21
18 5 0.21
ACGTcount: A:0.07, C:0.11, G:0.07, T:0.75
Consensus pattern (18 bp):
TTTCCTTTTTTATGTTTG
Found at i:10670433 original size:23 final size:24
Alignment explanation
Indices: 10670389--10670443 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
10670379 TATTTTCTTC
* *
10670389 CATTTTTCTATTTTTCTATTTTAT
1 CATTTTTATATTTTGCTATTTTAT
*
10670413 CATTTTTATA-TTTGCTTTTTTAT
1 CATTTTTATATTTTGCTATTTTAT
10670436 CATTTTTA
1 CATTTTTA
10670444 AATATTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 19 0.68
24 9 0.32
ACGTcount: A:0.18, C:0.11, G:0.02, T:0.69
Consensus pattern (24 bp):
CATTTTTATATTTTGCTATTTTAT
Found at i:10670719 original size:14 final size:15
Alignment explanation
Indices: 10670693--10670727 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
10670683 CTATTTCACT
*
10670693 TTTTTTATCTTTTCA
1 TTTTTTATCTTTTAA
10670708 TTTTTTAT-TTTTAA
1 TTTTTTATCTTTTAA
10670722 TTTTTT
1 TTTTTT
10670728 TAATCAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTATCTTTTAA
Found at i:10670728 original size:15 final size:16
Alignment explanation
Indices: 10670692--10670729 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
10670682 TCTATTTCAC
*
10670692 TTTTTTTATCTTTTCA
1 TTTTTTTATCTTTTAA
10670708 -TTTTTTAT-TTTTAA
1 TTTTTTTATCTTTTAA
10670722 TTTTTTTA
1 TTTTTTTA
10670730 ATCAGATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTTATCTTTTAA
Found at i:10670952 original size:2 final size:2
Alignment explanation
Indices: 10670947--10670975 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10670937 ACTCTCTCTC
10670947 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10670976 GAAGTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10671073 original size:21 final size:24
Alignment explanation
Indices: 10671047--10671093 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 24
10671037 ATATATTATT
*
10671047 TAATATTTTTAT-T-TAA-TAAAA
1 TAATATATTTATCTATAATTAAAA
10671068 TAATATATTTATCTATAATTAAAA
1 TAATATATTTATCTATAATTAAAA
10671092 TA
1 TA
10671094 TAATTCATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 1 0.05
23 3 0.14
24 7 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TAATATATTTATCTATAATTAAAA
Found at i:10671931 original size:15 final size:15
Alignment explanation
Indices: 10671911--10671940 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10671901 ACGCATGGTA
10671911 CCCCAATTTGTTTTT
1 CCCCAATTTGTTTTT
10671926 CCCCAATTTGTTTTT
1 CCCCAATTTGTTTTT
10671941 TTTATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53
Consensus pattern (15 bp):
CCCCAATTTGTTTTT
Found at i:10683127 original size:99 final size:99
Alignment explanation
Indices: 10682956--10683153 Score: 351
Period size: 99 Copynumber: 2.0 Consensus size: 99
10682946 GAAGATTTAC
10682956 ATCTTATGGGTATGTATGTTTATTTGTGAGTGGACTAAAGGAGACTGAGAGGGTCTACATAGGTA
1 ATCTTATGGGTATGTATGTTTATTTGTGAGTGGACTAAAGGAGACTGAGAGGGTCTACATAGGTA
10683021 TAATGTATGGGTGCATATAGGTATGTGTTTGGTT
66 TAATGTATGGGTGCATATAGGTATGTGTTTGGTT
* *
10683055 ATCTTATGGGTATGTATGTTTGTTTGTGAGTGGACTAAAGGAGACTGAGAGGGTCTATATAGGTA
1 ATCTTATGGGTATGTATGTTTATTTGTGAGTGGACTAAAGGAGACTGAGAGGGTCTACATAGGTA
* * *
10683120 TGATGTATGTGTGCATATGGGTATGTGTTTGGTT
66 TAATGTATGGGTGCATATAGGTATGTGTTTGGTT
10683154 GTGTTGAAAT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 94 1.00
ACGTcount: A:0.24, C:0.06, G:0.32, T:0.38
Consensus pattern (99 bp):
ATCTTATGGGTATGTATGTTTATTTGTGAGTGGACTAAAGGAGACTGAGAGGGTCTACATAGGTA
TAATGTATGGGTGCATATAGGTATGTGTTTGGTT
Found at i:10683523 original size:31 final size:31
Alignment explanation
Indices: 10683446--10683531 Score: 102
Period size: 30 Copynumber: 2.8 Consensus size: 31
10683436 ATCAGAGCTA
* * * * * *
10683446 TGGTGATCCCTAATAAATGATATCAAAGTTG
1 TGGTGATCTCTAACAAGTGGTATTAAAATTG
*
10683477 TGGT-ATCTTTAACAAGTGGTATTAAAATTG
1 TGGTGATCTCTAACAAGTGGTATTAAAATTG
10683507 TGGTGATCTCTAACAAGTGGTATTA
1 TGGTGATCTCTAACAAGTGGTATTA
10683532 GAGCTGATGG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 23 0.50
31 23 0.50
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (31 bp):
TGGTGATCTCTAACAAGTGGTATTAAAATTG
Found at i:10683896 original size:52 final size:52
Alignment explanation
Indices: 10683829--10683927 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
10683819 GGACAAGAAG
*
10683829 ACTTGGAGAAAAAGAATTTTAAAAGGAAAAAGATTCTTAATAGGCAAGTTTA
1 ACTTGCAGAAAAAGAATTTTAAAAGGAAAAAGATTCTTAATAGGCAAGTTTA
* * * *
10683881 ACTTGCAGAAGAAGAATTTTAAAAGTAGAAGGATTCTTAATAGGCAA
1 ACTTGCAGAAAAAGAATTTTAAAAGGAAAAAGATTCTTAATAGGCAA
10683928 ATTTGTATGG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.26
Consensus pattern (52 bp):
ACTTGCAGAAAAAGAATTTTAAAAGGAAAAAGATTCTTAATAGGCAAGTTTA
Found at i:10714195 original size:19 final size:19
Alignment explanation
Indices: 10714171--10714208 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10714161 TACACATGAA
10714171 ATATGTAATAATAAATTTT
1 ATATGTAATAATAAATTTT
*
10714190 ATATGTTATAATAAATTTT
1 ATATGTAATAATAAATTTT
10714209 TCATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATGTAATAATAAATTTT
Found at i:10715568 original size:7 final size:7
Alignment explanation
Indices: 10715556--10715598 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
10715546 ATATTTAATA
10715556 AATATTT
1 AATATTT
10715563 AATATTT
1 AATATTT
10715570 AATATTT
1 AATATTT
10715577 -ATAATTT
1 AAT-ATTT
*
10715584 TATATTT
1 AATATTT
10715591 -ATATTT
1 AATATTT
10715597 AA
1 AA
10715599 CCTCTTCACC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 8 0.24
7 23 0.70
8 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AATATTT
Found at i:10719531 original size:27 final size:28
Alignment explanation
Indices: 10719485--10719542 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
10719475 CTTTCAATGT
*
10719485 AAAAACCATTTATGTAATTTGAAAGCTG
1 AAAAACCATATATGTAATTTGAAAGCTG
*
10719513 AAAAATCATATATGT-ATTTGAAAGCTG
1 AAAAACCATATATGTAATTTGAAAGCTG
10719540 AAA
1 AAA
10719543 TGTCTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.31
Consensus pattern (28 bp):
AAAAACCATATATGTAATTTGAAAGCTG
Found at i:10723629 original size:31 final size:31
Alignment explanation
Indices: 10723571--10723630 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
10723561 CAAGATATAA
* *
10723571 TATAATAATAAATTTAATTTTAATATTTTTC
1 TATAATAATAAAATTAATATTAATATTTTTC
10723602 TATAATAATAAAATTAA-ATTAATTATTTT
1 TATAATAATAAAATTAATATTAA-TATTTT
10723631 GATGCTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
TATAATAATAAAATTAATATTAATATTTTTC
Found at i:10724750 original size:12 final size:12
Alignment explanation
Indices: 10724709--10724743 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10724699 ATTTATATAT
10724709 TTTTTTGTTTTC
1 TTTTTTGTTTTC
*
10724721 TATTTTGTTTTC
1 TTTTTTGTTTTC
*
10724733 TTTTTTCTTTT
1 TTTTTTGTTTT
10724744 TTCTTTTTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.83
Consensus pattern (12 bp):
TTTTTTGTTTTC
Found at i:10725801 original size:19 final size:18
Alignment explanation
Indices: 10725768--10725803 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
10725758 ATATTAATTA
*
10725768 ATAAATAATAAAAAATAC
1 ATAAATAAAAAAAAATAC
10725786 ATAAATATAAAAAAAATA
1 ATAAATA-AAAAAAAATA
10725804 AAATTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAATAAAAAAAAATAC
Found at i:10727151 original size:9 final size:9
Alignment explanation
Indices: 10727137--10727179 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
10727127 AGTAAATAAT
10727137 AAATTTAAA
1 AAATTTAAA
*
10727146 AAATTTAAG
1 AAATTTAAA
10727155 AAATGTTAAA
1 AAAT-TTAAA
*
10727165 AAATTTAAT
1 AAATTTAAA
10727174 AAATTT
1 AAATTT
10727180 TAGCCAAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 22 0.73
10 8 0.27
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (9 bp):
AAATTTAAA
Found at i:10727165 original size:19 final size:18
Alignment explanation
Indices: 10727137--10727179 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
10727127 AGTAAATAAT
10727137 AAATTTAAAAAATTTAAG
1 AAATTTAAAAAATTTAAG
*
10727155 AAATGTTAAAAAATTTAAT
1 AAAT-TTAAAAAATTTAAG
10727174 AAATTT
1 AAATTT
10727180 TAGCCAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
AAATTTAAAAAATTTAAG
Found at i:10731002 original size:22 final size:22
Alignment explanation
Indices: 10730974--10731017 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10730964 GTGAATGAGA
10730974 ACATACTATTGTAAGATCTAAT
1 ACATACTATTGTAAGATCTAAT
10730996 ACATACTATTGTAAGATCTAAT
1 ACATACTATTGTAAGATCTAAT
10731018 GTGTTTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (22 bp):
ACATACTATTGTAAGATCTAAT
Found at i:10731514 original size:14 final size:14
Alignment explanation
Indices: 10731483--10731533 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
10731473 AAATTGTAAT
* *
10731483 ATATAAAATTTTATA
1 ATAT-AAATATTAAA
10731498 ATATAAATATTAAA
1 ATATAAATATTAAA
10731512 ATATATAA-ATTTAAA
1 ATATA-AATA-TTAAA
10731527 ATATAAA
1 ATATAAA
10731534 ATAGAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 16 0.50
15 16 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATAAATATTAAA
Found at i:10731535 original size:14 final size:14
Alignment explanation
Indices: 10731472--10731535 Score: 67
Period size: 15 Copynumber: 4.4 Consensus size: 14
10731462 ATTTTCTGAA
*
10731472 AAAATTGTAATATAT
1 AAAATT-TAAAATAT
*
10731487 AAAATTTTATAATAT
1 AAAA-TTTAAAATAT
10731502 -AAATATTAAAATAT
1 AAAAT-TTAAAATAT
10731516 ATAAATTTAAAATAT
1 A-AAATTTAAAATAT
10731531 AAAAT
1 AAAAT
10731536 AGAATAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
13 1 0.02
14 15 0.36
15 20 0.48
16 6 0.14
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
AAAATTTAAAATAT
Found at i:10731797 original size:23 final size:23
Alignment explanation
Indices: 10731770--10731820 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
10731760 AATTCATTTA
*
10731770 CTCTCTTTAAAACCAAATAAATT
1 CTCTCTCTAAAACCAAATAAATT
10731793 CTCTCTCTAAAACCAAATAAATT
1 CTCTCTCTAAAACCAAATAAATT
*
10731816 TTCTC
1 CTCTC
10731821 CTTTTTGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.35
Consensus pattern (23 bp):
CTCTCTCTAAAACCAAATAAATT
Found at i:10733929 original size:12 final size:12
Alignment explanation
Indices: 10733914--10734082 Score: 57
Period size: 12 Copynumber: 13.8 Consensus size: 12
10733904 GTATTTTATG
10733914 TATTTTTATATT
1 TATTTTTATATT
* *
10733926 TATTATTATTATG
1 TATTTTTA-TATT
** *
10733939 TATTAATATATG
1 TATTTTTATATT
* *
10733951 TATATTTGTATT
1 TATTTTTATATT
10733963 TATTTATT-TATT
1 TATTT-TTATATT
10733975 TATTTTTAT-TT
1 TATTTTTATATT
**
10733986 AGAATAGATTTATATGT
1 ----TATTTTTATAT-T
10734003 ATATTATTTATA--
1 -TATT-TTTATATT
* *
10734015 TAGTTATATATT
1 TATTTTTATATT
*
10734027 TATTATTATA-T
1 TATTTTTATATT
*
10734038 TATTATTAT-TAT
1 TATTTTTATAT-T
10734050 TATTTTTATATTT
1 TATTTTTATA-TT
10734063 TATTTTT-T-TT
1 TATTTTTATATT
10734073 GTATTTTTAT
1 -TATTTTTAT
10734083 TTATCTAATT
Statistics
Matches: 120, Mismatches: 19, Indels: 36
0.69 0.11 0.21
Matches are distributed among these distances:
10 7 0.06
11 24 0.20
12 50 0.42
13 20 0.17
14 4 0.03
15 13 0.11
16 1 0.01
17 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (12 bp):
TATTTTTATATT
Found at i:10734000 original size:45 final size:43
Alignment explanation
Indices: 10733910--10734013 Score: 104
Period size: 45 Copynumber: 2.3 Consensus size: 43
10733900 TTCTGTATTT
* *
10733910 TATGTATTT-TTATATTTATTATTATTATGTATTAATATATGTA
1 TATGTATTTATT-TATTTATTATTATTATGTATGAATAGATGTA
* * *
10733953 TATTTGTATTTATTTATTTATTTATTTTTATTTA-GAATAGATTTA
1 TA--TGTATTTATTTATTTA-TTATTATTATGTATGAATAGATGTA
10733998 TATGTATATTATTTAT
1 TATGTAT-TTATTTAT
10734014 ATAGTTATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
43 7 0.14
44 8 0.16
45 23 0.45
46 13 0.25
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (43 bp):
TATGTATTTATTTATTTATTATTATTATGTATGAATAGATGTA
Found at i:10734021 original size:23 final size:22
Alignment explanation
Indices: 10733995--10734053 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
10733985 TAGAATAGAT
*
10733995 TTATATGTATATTATTTATATAG
1 TTATATATATATTA-TTATATAG
*
10734018 TTATATATTTATTATTATATTA-
1 TTATATATATATTATTATA-TAG
10734040 TTAT-TAT-TATTATT
1 TTATATATATATTATT
10734054 TTTATATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 7 0.21
21 3 0.09
22 9 0.27
23 14 0.42
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (22 bp):
TTATATATATATTATTATATAG
Found at i:10734034 original size:3 final size:3
Alignment explanation
Indices: 10734026--10734066 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
10734016 AGTTATATAT
*
10734026 TTA TTA TTA -TA TTA TTA TTA TTA TTA TTT TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10734067 TTTTTTGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:10734061 original size:14 final size:15
Alignment explanation
Indices: 10733875--10734069 Score: 65
Period size: 14 Copynumber: 13.1 Consensus size: 15
10733865 CAATCTTATA
10733875 TTATTATTATTATTT
1 TTATTATTATTATTT
* *
10733890 TT-TTCTT-TTCTTCT
1 TTATTATTATTATT-T
*
10733904 GTATT-TTATGTATTT
1 TTATTATTAT-TATTT
*
10733919 TTA-TATTTATTATTA
1 TTATTA-TTATTATTT
* *
10733934 TTATGTATTAATATAT
1 TTAT-TATTATTATTT
*
10733950 GTA-TATT-TGTATTT
1 TTATTATTAT-TATTT
*
10733964 AT-TTATTTATTTATTT
1 TTATTA-TTA-TTATTT
** *
10733980 TTATTTAGAATAGATTT
1 TTA-TTATTAT-TATTT
*
10733997 ATATGTA-TATTATTT
1 TTAT-TATTATTATTT
* *
10734012 ATA-TAGTTA-TATAT
1 TTATTA-TTATTATTT
*
10734026 TTATTATTA-TATTA
1 TTATTATTATTATTT
10734040 TTATTATTATTATTT
1 TTATTATTATTATTT
10734055 TTA-TATT-TTATTT
1 TTATTATTATTATTT
10734068 TT
1 TT
10734070 TTTGTATTTT
Statistics
Matches: 134, Mismatches: 25, Indels: 44
0.66 0.12 0.22
Matches are distributed among these distances:
13 14 0.10
14 45 0.34
15 35 0.26
16 25 0.19
17 12 0.09
18 3 0.02
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (15 bp):
TTATTATTATTATTT
Found at i:10734061 original size:17 final size:17
Alignment explanation
Indices: 10734002--10734083 Score: 60
Period size: 17 Copynumber: 4.7 Consensus size: 17
10733992 GATTTATATG
* *
10734002 TATATTATTTATATAGTTA
1 TATATTA-TTAT-TATTTT
*
10734021 TATATTTATTATTA-TAT
1 TATA-TTATTATTATTTT
10734038 TATTATTATTATTATTTT
1 TA-TATTATTATTATTTT
*
10734056 TATATT-TTATTTTTTT
1 TATATTATTATTATTTT
* *
10734072 TGTATTTTTATT
1 TATATTATTATT
10734084 TATCTAATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
16 14 0.26
17 21 0.39
18 8 0.15
19 8 0.15
20 3 0.06
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TATATTATTATTATTTT
Found at i:10734079 original size:7 final size:6
Alignment explanation
Indices: 10734023--10734084 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
10734013 TATAGTTATA
* * *
10734023 TATTTAT TATTATAT TATTAT TATTAT TATTTT TATATTT TATTTT T-TTTG
1 TATTT-T TATT-T-T TATTTT TATTTT TATTTT TAT-TTT TATTTT TATTTT
10734074 TATTTT TATTT
1 TATTTT TATTT
10734085 ATCTAATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
5 4 0.08
6 27 0.56
7 10 0.21
8 7 0.15
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:10734084 original size:17 final size:17
Alignment explanation
Indices: 10734018--10734084 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 17
10734008 ATTTATATAG
* *
10734018 TTATATATTTATTATTATA
1 TTATATTTTTATT-TT-TT
* *
10734037 TTATTATTATTATTATTT
1 TTA-TATTTTTATTTTTT
10734055 TTATA-TTTTATTTTTT
1 TTATATTTTTATTTTTT
*
10734071 TTGTATTTTTATTT
1 TTATATTTTTATTT
10734085 ATCTAATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
16 13 0.33
17 10 0.26
18 4 0.10
19 4 0.10
20 8 0.21
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.73
Consensus pattern (17 bp):
TTATATTTTTATTTTTT
Found at i:10734119 original size:35 final size:35
Alignment explanation
Indices: 10734076--10734143 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
10734066 TTTTTTTGTA
*
10734076 TTTTTATTTAT-CTAATTATATATCTGTTATTTCTT
1 TTTTTATTTATCCT-ATAATATATCTGTTATTTCTT
*
10734111 TTTTTATTTATCCTATAATATATCTGTTTTTTC
1 TTTTTATTTATCCTATAATATATCTGTTATTTC
10734144 GATTTATCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.22, C:0.10, G:0.03, T:0.65
Consensus pattern (35 bp):
TTTTTATTTATCCTATAATATATCTGTTATTTCTT
Found at i:10735088 original size:27 final size:27
Alignment explanation
Indices: 10735058--10735114 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
10735048 ATTAGATTTA
10735058 TTTAATATT-TTTTATCTTTATC-TTATT
1 TTTAATATTGTTTTA-CTTT-TCTTTATT
* *
10735085 TTTATTTTTGTTTTACTTTTCTTTATT
1 TTTAATATTGTTTTACTTTTCTTTATT
10735112 TTT
1 TTT
10735115 TTTCTCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 2 0.08
27 19 0.73
28 5 0.19
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTAATATTGTTTTACTTTTCTTTATT
Found at i:10735112 original size:45 final size:43
Alignment explanation
Indices: 10735065--10735153 Score: 115
Period size: 47 Copynumber: 2.0 Consensus size: 43
10735055 TTATTTAATA
* *
10735065 TTTTTTATCTTTATCTTATTTTTATTTTTGTTTTACTTTTCTTTATT
1 TTTTTTATCTTTAT-TTACTTTTA-TTTTGTTTTA-TATTCTTTA-T
*
10735112 TTTTTTCTCTTTATTTACTTTTATTTTGTTTTATATTCTTTA
1 TTTTTTATCTTTATTTACTTTTATTTTGTTTTATATTCTTTA
10735154 AATAAAAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
44 8 0.21
45 10 0.26
46 8 0.21
47 13 0.33
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.75
Consensus pattern (43 bp):
TTTTTTATCTTTATTTACTTTTATTTTGTTTTATATTCTTTAT
Found at i:10735323 original size:58 final size:60
Alignment explanation
Indices: 10735164--10735567 Score: 498
Period size: 58 Copynumber: 6.7 Consensus size: 60
10735154 AATAAAAATC
*
10735164 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC---AA
* * ** *
10735227 AAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAA-TTTCCA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
* * * *
10735286 AAAAAAATATTTTTG-GGGAAAGTTGAAAATATTAATTTTTCTTAAAAATAAATTTTCAAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC----AA
* ** * *
10735349 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTGAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAA
* *
10735410 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC-C
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
* *
10735468 AAAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAA-TTTC--
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTCAA
*
10735526 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10735568 CTACACAAGA
Statistics
Matches: 302, Mismatches: 31, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
58 114 0.38
59 33 0.11
60 3 0.01
61 50 0.17
62 4 0.01
63 64 0.21
64 28 0.09
65 6 0.02
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (60 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
Found at i:10735464 original size:183 final size:177
Alignment explanation
Indices: 10735153--10735567 Score: 575
Period size: 183 Copynumber: 2.3 Consensus size: 177
10735143 TATATTCTTT
** *
10735153 AAATAAAAATCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
1 AAATAAATTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAG
*
10735218 TTTCAAAAAAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTT
66 TTT--AAAAAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
* *
10735283 CCAAAAAAAATATTTTTGGGG-AAAGTTGAAAATATTAATTTTTCTT-AA
129 CC-AAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAA
**
10735331 AAATAAATTTTCAAAAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGA
1 AAATAAA-TTTC------AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * *
10735396 AATCAAAGTTT-GAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
59 AAT-AAAGTTTAAAAAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* *
10735460 AAATTTCCAAAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
123 AAATTTCCAAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAA
* *
10735515 AAATAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAATTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10735568 CTACACAAGA
Statistics
Matches: 212, Mismatches: 15, Indels: 21
0.85 0.06 0.08
Matches are distributed among these distances:
177 40 0.19
178 7 0.03
179 2 0.01
182 17 0.08
183 83 0.39
184 9 0.04
185 48 0.23
186 6 0.03
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (177 bp):
AAATAAATTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAG
TTTAAAAAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
AAAAAAATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAAA
Found at i:10745986 original size:10 final size:10
Alignment explanation
Indices: 10745971--10746030 Score: 59
Period size: 10 Copynumber: 6.0 Consensus size: 10
10745961 CTATGCTTGA
10745971 AAAAAAAAAT
1 AAAAAAAAAT
10745981 AAAAAAAAAT
1 AAAAAAAAAT
*
10745991 -GAAAAAAAT
1 AAAAAAAAAT
* **
10746000 GAAAAATGAT
1 AAAAAAAAAT
*
10746010 GAAGAAAAAAT
1 -AAAAAAAAAT
10746021 AAAAAAAAAT
1 AAAAAAAAAT
10746031 TGAAAAAGAA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
9 8 0.21
10 25 0.64
11 6 0.15
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:10747166 original size:41 final size:42
Alignment explanation
Indices: 10747054--10747226 Score: 260
Period size: 41 Copynumber: 4.1 Consensus size: 42
10747044 ATGATTGTCA
*
10747054 AGGAGCAATTTA-CTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
10747095 AGGAGCAATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTTAG
10747137 AGGAGCAATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
10747178 AGGAGCAATTTATGTTTCTCAAAGTTGTTGAGCCTTTGTTTAG
1 AGGAGCAATTTATCTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
10747221 AGGAGC
1 AGGAGC
10747227 TTTGGTTAAA
Statistics
Matches: 121, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
41 52 0.43
42 42 0.35
43 27 0.22
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (42 bp):
AGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:10747249 original size:8 final size:8
Alignment explanation
Indices: 10747236--10747275 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
10747226 CTTTGGTTAA
10747236 AAAAAAAC
1 AAAAAAAC
10747244 -AAAAAAC
1 AAAAAAAC
10747251 AAAAAAAC
1 AAAAAAAC
10747259 AAAAAAAAAC
1 --AAAAAAAC
10747269 AAAAAAA
1 AAAAAAA
10747276 TGATATTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
7 7 0.24
8 14 0.48
10 8 0.28
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:10747249 original size:10 final size:10
Alignment explanation
Indices: 10747234--10747275 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
10747224 AGCTTTGGTT
10747234 AAAAAAA-AA
1 AAAAAAACAA
*
10747243 CAAAAAAC--
1 AAAAAAACAA
10747251 AAAAAAACAA
1 AAAAAAACAA
10747261 AAAAAAACAA
1 AAAAAAACAA
10747271 AAAAA
1 AAAAA
10747276 TGATATTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 7 0.25
9 6 0.21
10 15 0.54
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:10747256 original size:15 final size:15
Alignment explanation
Indices: 10747236--10747264 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10747226 CTTTGGTTAA
10747236 AAAAAAACAAAAAAC
1 AAAAAAACAAAAAAC
10747251 AAAAAAACAAAAAA
1 AAAAAAACAAAAAA
10747265 AAACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAAAAC
Found at i:10747257 original size:18 final size:18
Alignment explanation
Indices: 10747234--10747275 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
10747224 AGCTTTGGTT
*
10747234 AAAAAAA-AACAAAAAAC
1 AAAAAAACAAAAAAAAAC
10747251 AAAAAAACAAAAAAAAAC
1 AAAAAAACAAAAAAAAAC
10747269 AAAAAAA
1 AAAAAAA
10747276 TGATATTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAACAAAAAAAAAC
Found at i:10747566 original size:15 final size:15
Alignment explanation
Indices: 10747548--10747596 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
10747538 TTTAGAATAG
10747548 ATTTATATGTATATT
1 ATTTATATGTATATT
10747563 ATTTATATAGT-TATAT
1 ATTTATAT-GTATAT-T
10747579 ATTTATTAT-TATATT
1 ATTTA-TATGTATATT
10747594 ATT
1 ATT
10747597 ATTATTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 16 0.53
16 11 0.37
17 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
ATTTATATGTATATT
Found at i:10747576 original size:23 final size:22
Alignment explanation
Indices: 10747550--10747612 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
10747540 TAGAATAGAT
*
10747550 TTATATGTATATTATTTATATAG
1 TTATATATATATTA-TTATATAG
*
10747573 TTATATATTTATTATTATATTA-
1 TTATATATATATTATTATA-TAG
*
10747595 TTAT-TAT-TATTTTTATAT
1 TTATATATATATTATTATAT
10747613 TTTATTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.03
20 9 0.25
21 3 0.08
22 9 0.25
23 14 0.39
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (22 bp):
TTATATATATATTATTATATAG
Found at i:10747603 original size:17 final size:17
Alignment explanation
Indices: 10747550--10747605 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 17
10747540 TAGAATAGAT
10747550 TTATATGTA-TATTATT-
1 TTATAT-TATTATTATTA
10747566 TATATAGTTATATATTTATTA
1 T-TATA-TTAT-TA-TTATTA
10747587 TTATATTATTATTATTA
1 TTATATTATTATTATTA
10747604 TT
1 TT
10747606 TTTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
16 1 0.03
17 14 0.41
18 3 0.09
19 6 0.18
20 9 0.26
21 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:10747621 original size:6 final size:6
Alignment explanation
Indices: 10747580--10747638 Score: 55
Period size: 6 Copynumber: 9.2 Consensus size: 6
10747570 TAGTTATATA
* * *
10747580 TTTATT ATTATATT ATTATT ATTATT TTTATAT TTTATT TTTTTT TTGTATT
1 TTTATT -TT-TATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TT-TATT
10747632 TTTATT T
1 TTTATT T
10747639 ATCTAATTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
6 27 0.60
7 14 0.31
8 4 0.09
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:10747626 original size:19 final size:19
Alignment explanation
Indices: 10747561--10747638 Score: 68
Period size: 20 Copynumber: 4.0 Consensus size: 19
10747551 TATATGTATA
* * *
10747561 TTATTTATATAGTTATATAT
1 TTATTTTTATA-TTTTATTT
* *
10747581 TTATTATTATATTATTATTA
1 TTATTTTTATATT-TTATTT
10747601 TTATTTTTATATTTTATTT
1 TTATTTTTATATTTTATTT
*
10747620 TT-TTTTTGTATTTTTATTT
1 TTATTTTTATA-TTTTATTT
10747639 ATCTAATTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
18 7 0.15
19 17 0.35
20 24 0.50
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
TTATTTTTATATTTTATTT
Found at i:10747675 original size:36 final size:36
Alignment explanation
Indices: 10747630--10747698 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
10747620 TTTTTTTGTA
*
10747630 TTTTTATTTAT-CTAATTATATATCTGTTATTTCTTT
1 TTTTTATTTATCCT-ATAATATATCTGTTATTTCTTT
*
10747666 TTTTTATTTATCCTATAATATATCTGTTTTTTC
1 TTTTTATTTATCCTATAATATATCTGTTATTTC
10747699 GATTTATCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
36 28 0.93
37 2 0.07
ACGTcount: A:0.22, C:0.10, G:0.03, T:0.65
Consensus pattern (36 bp):
TTTTTATTTATCCTATAATATATCTGTTATTTCTTT
Found at i:10748624 original size:13 final size:12
Alignment explanation
Indices: 10748586--10748629 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
10748576 GCTTCAGGTT
10748586 TTTTTTTTTC-A
1 TTTTTTTTTCTA
*
10748597 TTTATTTTTTTTA
1 TTT-TTTTTTCTA
10748610 TTTGTTTTTTCTA
1 TTT-TTTTTTCTA
10748623 TTTTTTT
1 TTTTTTT
10748630 CATTAGATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 3 0.11
12 10 0.36
13 15 0.54
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTCTA
Found at i:10748700 original size:21 final size:20
Alignment explanation
Indices: 10748674--10748729 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 20
10748664 TTATCTTATT
*
10748674 TTTATTTTTGTTTTACT-TTTC
1 TTTATTTTT-TTTT-CTCTTTA
10748695 TTTATTTTTTTTTCTCTTTA
1 TTTATTTTTTTTTCTCTTTA
10748715 TTTACTTTTTATTTT
1 TTTA-TTTTT-TTTT
10748730 GTTTTATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 2 0.06
20 11 0.35
21 14 0.45
22 4 0.13
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTATTTTTTTTTCTCTTTA
Found at i:10748700 original size:27 final size:27
Alignment explanation
Indices: 10748656--10748707 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
10748646 TTTAATATTT
10748656 TTTTATCTTTATCTTATTTTTATTTTTG
1 TTTTATCTTTATCTTATTTTT-TTTTTG
10748684 TTTTA-CTTT-TCTTTATTTTTTTTT
1 TTTTATCTTTATC-TTATTTTTTTTT
10748708 CTCTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTTATCTTTATCTTATTTTTTTTTTG
Found at i:10748713 original size:48 final size:46
Alignment explanation
Indices: 10748653--10748744 Score: 132
Period size: 48 Copynumber: 2.0 Consensus size: 46
10748643 TTATTTAATA
*
10748653 TTTTTTTATCTTTATCTTA-TTTTTATTTTTGTTTTACTTTTCTTTATT
1 TTTTTTTATCTTTAT-TTACTTTTTA-TTTTGTTTTA-TATTCTTTATT
*
10748701 TTTTTTTCTCTTTATTTACTTTTTATTTTGTTTTATATTCTTTA
1 TTTTTTTATCTTTATTTACTTTTTATTTTGTTTTATATTCTTTA
10748745 AATAAAAATC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 8 0.20
47 13 0.32
48 20 0.49
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (46 bp):
TTTTTTTATCTTTATTTACTTTTTATTTTGTTTTATATTCTTTATT
Found at i:10748806 original size:58 final size:58
Alignment explanation
Indices: 10748744--10748854 Score: 195
Period size: 58 Copynumber: 1.9 Consensus size: 58
10748734 TATATTCTTT
10748744 AAATAAAAATCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 AAATAAAAATCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
** *
10748802 AAATAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAAAATCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10748855 CTACACAAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (58 bp):
AAATAAAAATCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
Found at i:10749937 original size:46 final size:44
Alignment explanation
Indices: 10749886--10749972 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 44
10749876 AGACGTCTAA
* *
10749886 TAATAAAAAAAAGAGTTTAAATTACAATTTTATCTCATTAGAATGT
1 TAAT-AAAAAAACAGTTTAAATTACAA-TTTATCTCAATAGAATGT
*
10749932 TAATAATAAAACAGTTTAAATTACAATTTATCTCAATAGAA
1 TAATAAAAAAACAGTTTAAATTACAATTTATCTCAATAGAA
10749973 ATATAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 14 0.37
45 20 0.53
46 4 0.11
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (44 bp):
TAATAAAAAAACAGTTTAAATTACAATTTATCTCAATAGAATGT
Found at i:10749980 original size:44 final size:45
Alignment explanation
Indices: 10749885--10749986 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 45
10749875 TAGACGTCTA
* * *
10749885 ATAATAAAAAAAAGAGTTTAAATTACAATTTTATCTCATTAGAATG
1 ATAAT-AATAAAACAGTTTAAATTACAATTTTATCTCAATAGAATG
*
10749931 TTAATAATAAAACAGTTTAAATTACAA-TTTATCTCAATAGAAAT-
1 ATAATAATAAAACAGTTTAAATTACAATTTTATCTCAATAG-AATG
10749975 ATAATAATAAAA
1 ATAATAATAAAA
10749987 AAAGCTATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 23 0.46
45 23 0.46
46 4 0.08
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.34
Consensus pattern (45 bp):
ATAATAATAAAACAGTTTAAATTACAATTTTATCTCAATAGAATG
Found at i:10751663 original size:15 final size:15
Alignment explanation
Indices: 10751640--10751673 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
10751630 TCAACTTGAT
*
10751640 TAAAAATATAATACA
1 TAAAAATATAAAACA
*
10751655 TAAAGATATAAAACA
1 TAAAAATATAAAACA
10751670 TAAA
1 TAAA
10751674 CGAAAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAAATATAAAACA
Found at i:10753595 original size:33 final size:33
Alignment explanation
Indices: 10753524--10753597 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 33
10753514 TTTTTGCTGT
* *
10753524 GTAA-TTTTGTCTGTTGTAATTGGTTTTTTCGA
1 GTAATTTTTATCTGTTGTAATTGGTTTTGTCGA
10753556 TGTAATTTTTATCTGTTGTAATTGGTTTTGGTCGA
1 -GTAATTTTTATCTGTTGTAATTGGTTTT-GTCGA
10753591 -TAATTTT
1 GTAATTTT
10753598 CCTTGTCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 11 0.30
34 22 0.59
35 4 0.11
ACGTcount: A:0.18, C:0.05, G:0.20, T:0.57
Consensus pattern (33 bp):
GTAATTTTTATCTGTTGTAATTGGTTTTGTCGA
Found at i:10758443 original size:2 final size:2
Alignment explanation
Indices: 10758436--10758472 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10758426 CACATCCTCA
10758436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10758473 AAACAAAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10758675 original size:13 final size:13
Alignment explanation
Indices: 10758659--10758692 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10758649 ACTGCTAAAT
*
10758659 TCAACAACTAACA
1 TCAACAAATAACA
*
10758672 TCAACAAATTACA
1 TCAACAAATAACA
10758685 TCAACAAA
1 TCAACAAA
10758693 ATAAATAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.18
Consensus pattern (13 bp):
TCAACAAATAACA
Found at i:10758725 original size:2 final size:2
Alignment explanation
Indices: 10758720--10758750 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10758710 TGTGTGTGTG
10758720 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10758751 GAGTCAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10767868 original size:26 final size:26
Alignment explanation
Indices: 10767839--10767899 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
10767829 TTTTGATATA
10767839 ATATAATTAAAATTTGATAACTTTTG
1 ATATAATTAAAATTTGATAACTTTTG
* * *
10767865 ATATAATTTTAATTTTGATTACTTTTG
1 ATATAA-TTAAAATTTGATAACTTTTG
*
10767892 ATAAAATT
1 ATATAATT
10767900 TTAGTAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (26 bp):
ATATAATTAAAATTTGATAACTTTTG
Found at i:10767881 original size:27 final size:27
Alignment explanation
Indices: 10767851--10767902 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
10767841 ATAATTAAAA
*
10767851 TTTGATAACTTTTGATATAATTTTAAT
1 TTTGATAACTTTTGATAAAATTTTAAT
*
10767878 TTTGATTACTTTTGATAAAATTTTA
1 TTTGATAACTTTTGATAAAATTTTA
10767903 GTAATTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (27 bp):
TTTGATAACTTTTGATAAAATTTTAAT
Found at i:10768008 original size:36 final size:37
Alignment explanation
Indices: 10767938--10768008 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
10767928 CCATTGATAA
*
10767938 ATTTTAGTAACCTCTTGATGTAATTTTAATAATTAAC
1 ATTTTAGTAACCTCTTGATATAATTTTAATAATTAAC
* *
10767975 ATTTTAGTAA-CT-TATGATATACTTTTAGTAATTA
1 ATTTTAGTAACCTCT-TGATATAATTTTAATAATTA
10768009 TTAATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 1 0.03
36 19 0.63
37 10 0.33
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.48
Consensus pattern (37 bp):
ATTTTAGTAACCTCTTGATATAATTTTAATAATTAAC
Found at i:10768298 original size:22 final size:22
Alignment explanation
Indices: 10768273--10768467 Score: 131
Period size: 22 Copynumber: 8.9 Consensus size: 22
10768263 TATCAAGATA
* *
10768273 ATTAAGTTATTATTAATTTATT
1 ATTAAGTTATTAATGATTTATT
** *
10768295 ATTATA-TTAACAGTGATTTATT
1 ATTA-AGTTATTAATGATTTATT
* * * *
10768317 ACTAAGCTATTAGTGATGTATT
1 ATTAAGTTATTAATGATTTATT
* * **
10768339 ATTAAATTATCAATGATTTACC
1 ATTAAGTTATTAATGATTTATT
* * *
10768361 ATTAACTTAGTATTGATTTATT
1 ATTAAGTTATTAATGATTTATT
*
10768383 ATTAACTTATTAATGATTTATT
1 ATTAAGTTATTAATGATTTATT
* * * *
10768405 ACTAAGTTATGAGTGATTTAAT
1 ATTAAGTTATTAATGATTTATT
* * *
10768427 ATTAAATTGTTAATGATTTACT
1 ATTAAGTTATTAATGATTTATT
* * *
10768449 ACTAAATTATTGATGATTT
1 ATTAAGTTATTAATGATTT
10768468 GTAATAAATT
Statistics
Matches: 132, Mismatches: 39, Indels: 4
0.75 0.22 0.02
Matches are distributed among these distances:
21 1 0.01
22 130 0.98
23 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.49
Consensus pattern (22 bp):
ATTAAGTTATTAATGATTTATT
Found at i:10768356 original size:44 final size:44
Alignment explanation
Indices: 10768288--10768453 Score: 163
Period size: 44 Copynumber: 3.8 Consensus size: 44
10768278 GTTATTATTA
* * * *
10768288 ATTTATTATTATATTAACAGTGATTTATTACTAAGCTATTAGTG
1 ATTTATTATTAAATTATCAATGATTTACTACTAAGCTATTAGTG
* * * * *
10768332 ATGTATTATTAAATTATCAATGATTTACCATTAA-CTTAGTATTG
1 ATTTATTATTAAATTATCAATGATTTACTACTAAGC-TATTAGTG
* * * * *
10768376 ATTTATTATTAACTTATTAATGATTTATTACTAAGTTATGAGTG
1 ATTTATTATTAAATTATCAATGATTTACTACTAAGCTATTAGTG
* * *
10768420 ATTTAATATTAAATTGTTAATGATTTACTACTAA
1 ATTTATTATTAAATTATCAATGATTTACTACTAA
10768454 ATTATTGATG
Statistics
Matches: 97, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
43 1 0.01
44 96 0.99
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.48
Consensus pattern (44 bp):
ATTTATTATTAAATTATCAATGATTTACTACTAAGCTATTAGTG
Found at i:10768431 original size:66 final size:66
Alignment explanation
Indices: 10768308--10768467 Score: 162
Period size: 66 Copynumber: 2.4 Consensus size: 66
10768298 ATATTAACAG
* * * * *
10768308 TGATTTATTACTAAGC-TATTAGTGATGTATTATTAAATTATCAATGATTTACCATTAACTTAG-
1 TGATTTATTACTAA-CTTATTAATGATTTATTACTAAATTATCAATGATTTAACATTAAATT-GT
*
10768371 TAT
64 TAA
* * * * *
10768374 TGATTTATTATTAACTTATTAATGATTTATTACTAAGTTATGAGTGATTTAATATTAAATTGTTA
1 TGATTTATTACTAACTTATTAATGATTTATTACTAAATTATCAATGATTTAACATTAAATTGTTA
10768439 A
66 A
* * *
10768440 TGATTTACTACTAAATTATTGATGATTT
1 TGATTTATTACTAACTTATTAATGATTT
10768468 GTAATAAATT
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
65 2 0.03
66 75 0.97
ACGTcount: A:0.35, C:0.06, G:0.11, T:0.48
Consensus pattern (66 bp):
TGATTTATTACTAACTTATTAATGATTTATTACTAAATTATCAATGATTTAACATTAAATTGTTA
A
Found at i:10768466 original size:44 final size:44
Alignment explanation
Indices: 10768308--10768493 Score: 146
Period size: 44 Copynumber: 4.2 Consensus size: 44
10768298 ATATTAACAG
* ** * * * *
10768308 TGATTTATTACTAAGCTATTAGTGATGTATTATTAAATTATCAA
1 TGATTTACTACTAAATTATGAGTGATTTAATATTAAATTATTAA
* * * * * *
10768352 TGATTTACCATTAACTTA-GTATTGATTTATTATTAACTTATTAA
1 TGATTTACTACTAAATTATG-AGTGATTTAATATTAAATTATTAA
* * *
10768396 TGATTTATTACTAAGTTATGAGTGATTTAATATTAAATTGTTAA
1 TGATTTACTACTAAATTATGAGTGATTTAATATTAAATTATTAA
* *
10768440 TGATTTACTACTAAATTATTGA-TGATTT-GTAATAAATT-TATAA
1 TGATTTACTACTAAATTA-TGAGTGATTTAATATTAAATTAT-TAA
10768483 TTGATTTACTA
1 -TGATTTACTA
10768494 AAAAAAATCA
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 11 0.10
44 99 0.86
45 4 0.03
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.48
Consensus pattern (44 bp):
TGATTTACTACTAAATTATGAGTGATTTAATATTAAATTATTAA
Found at i:10768526 original size:11 final size:11
Alignment explanation
Indices: 10768510--10768586 Score: 61
Period size: 11 Copynumber: 7.0 Consensus size: 11
10768500 ATCAATAATT
10768510 AACTAATTTAC
1 AACTAATTTAC
*
10768521 AACTAAATTATC
1 AACTAATTTA-C
10768533 -ACTAATTTAC
1 AACTAATTTAC
* *
10768543 TACTAAATTATC
1 AACTAATTTA-C
10768555 AA-TAATTTAC
1 AACTAATTTAC
* *
10768565 AAATAAATTATC
1 AACTAATTTA-C
10768577 AA-TAATTTAC
1 AACTAATTTAC
10768587 TATTATGTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
10 5 0.09
11 43 0.80
12 6 0.11
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (11 bp):
AACTAATTTAC
Found at i:10768537 original size:22 final size:22
Alignment explanation
Indices: 10768513--10768586 Score: 121
Period size: 22 Copynumber: 3.4 Consensus size: 22
10768503 AATAATTAAC
*
10768513 TAATTTACAACTAAATTATCAC
1 TAATTTACAACTAAATTATCAA
*
10768535 TAATTTACTACTAAATTATCAA
1 TAATTTACAACTAAATTATCAA
*
10768557 TAATTTACAAATAAATTATCAA
1 TAATTTACAACTAAATTATCAA
10768579 TAATTTAC
1 TAATTTAC
10768587 TATTATGTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (22 bp):
TAATTTACAACTAAATTATCAA
Found at i:10768737 original size:16 final size:15
Alignment explanation
Indices: 10768712--10768745 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
10768702 ATTATCCATA
10768712 ATTTACTATTAAGTT
1 ATTTACTATTAAGTT
*
10768727 ATTTAACTATTTAGTT
1 ATTT-ACTATTAAGTT
10768743 ATT
1 ATT
10768746 GATGATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (15 bp):
ATTTACTATTAAGTT
Found at i:10769491 original size:63 final size:64
Alignment explanation
Indices: 10769421--10769590 Score: 159
Period size: 64 Copynumber: 2.7 Consensus size: 64
10769411 ACTATTGAAT
* ** *
10769421 GTGTTTTTGAACAAAAA-ACCTTCAATAAT-CATTTTAAAAAATTTTAGAGAGGGATTATTAAAG
1 GTGTTTTTGAACAAAAATACATTCAATAATCCATTACAAAAAATTTTACAG-GGGATTATTAAAG
** * *
10769484 GTGTTTTTGGTCAAAAATACATTTAATAATCCCTTACAAAAAATTTTACAGGGGATTATTAAAG
1 GTGTTTTTGAACAAAAATACATTCAATAATCCATTACAAAAAATTTTACAGGGGATTATTAAAG
* * * * * *
10769548 ACAT-TTTTTG-CCAGAAATGCATTGAATAATCCGTTACAAAAAA
1 --GTGTTTTTGAACAAAAATACATTCAATAATCCATTACAAAAAA
10769591 ATTGAATAGA
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
63 15 0.17
64 51 0.57
65 22 0.25
66 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (64 bp):
GTGTTTTTGAACAAAAATACATTCAATAATCCATTACAAAAAATTTTACAGGGGATTATTAAAG
Found at i:10769593 original size:65 final size:65
Alignment explanation
Indices: 10769456--10769590 Score: 173
Period size: 64 Copynumber: 2.1 Consensus size: 65
10769446 TAATCATTTT
* *** * *
10769456 AAAAAATTTTAGAGAGGGATTATTAAAGGTGTTTTTGGTCAAAAATACATTTAATAATCCCTTAC
1 AAAAAATTTTACAGAGGGATTATTAAAGACATTTTTGGCCAAAAATACATTGAATAATCCCTTAC
* * * *
10769521 AAAAAATTTTACAG-GGGATTATTAAAGACATTTTTTGCCAGAAATGCATTGAATAATCCGTTAC
1 AAAAAATTTTACAGAGGGATTATTAAAGACATTTTTGGCCAAAAATACATTGAATAATCCCTTAC
10769585 AAAAAA
1 AAAAAA
10769591 ATTGAATAGA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
64 47 0.78
65 13 0.22
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (65 bp):
AAAAAATTTTACAGAGGGATTATTAAAGACATTTTTGGCCAAAAATACATTGAATAATCCCTTAC
Found at i:10771280 original size:124 final size:124
Alignment explanation
Indices: 10770996--10771344 Score: 404
Period size: 124 Copynumber: 2.8 Consensus size: 124
10770986 GTTCAAGACA
* * * * *
10770996 TTTTTGACCAAAAACGCCTTGAATAATCCTATTCAATTTTTTAT-AAAGGATTATTCAAGGCATT
1 TTTTTGACTAAAAACACCTTGAATAATCCTATT-AAATTTTTATGAAGGGATTATTCAAAGCATT
* * ** *
10771060 TTTAGTCAAAAATGCCTTGAATAATCCTTAAAAAAAA-GGCAGAGAATTATTCAAGGTAT
65 TCTAGTCAAAAATACCTTGAATAATCCAAAAAAAAAATGGCAGAGAATCATTCAAGGTAT
* * *
10771119 TTTTTGCCT-GAAACACCTTGAATAATCCTATTTAATTTTTATGAAGGGATTATTCAAAGCATTT
1 TTTTTGACTAAAAACACCTTGAATAATCCTATTAAATTTTTATGAAGGGATTATTCAAAGCATTT
* * *
10771183 CTAGTAAAAAAATACCTTAAATAATCCAAAAAAAAAATGGCA-AGGGATCATTCAAGGTAT
66 CTAGT-CAAAAATACCTTGAATAATCCAAAAAAAAAATGGCAGA-GAATCATTCAAGGTAT
* * * * *
10771243 TTTTTG-CTAAAAACACATTGAATAATCCCATTAAATTTTT-TGTAAGGGATTATTGAATGCATA
1 TTTTTGACTAAAAACACCTTGAATAATCCTATTAAATTTTTATG-AAGGGATTATTCAAAGCATT
* * *
10771306 TCTAGCCAAAAACACATTGAATAATCCAAAAAAAAAATG
65 TCTAGTCAAAAATACCTTGAATAATCCAAAAAAAAAATG
10771345 ACGGGCTTAT
Statistics
Matches: 192, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
121 8 0.04
122 44 0.23
123 67 0.35
124 73 0.38
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (124 bp):
TTTTTGACTAAAAACACCTTGAATAATCCTATTAAATTTTTATGAAGGGATTATTCAAAGCATTT
CTAGTCAAAAATACCTTGAATAATCCAAAAAAAAAATGGCAGAGAATCATTCAAGGTAT
Found at i:10772421 original size:17 final size:18
Alignment explanation
Indices: 10772387--10772421 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10772377 TGTTATTAAA
*
10772387 TATTTTTACTTTTTTATG
1 TATTTTTACTTTTATATG
10772405 TATTTTTAC-TTTATATG
1 TATTTTTACTTTTATATG
10772422 AAACATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.69
Consensus pattern (18 bp):
TATTTTTACTTTTATATG
Found at i:10773046 original size:43 final size:43
Alignment explanation
Indices: 10772983--10773071 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
10772973 GTGGTGTAAG
*
10772983 TTATATTGATTTACTTTTAAATT-TCAATAATAAACTACTAAA
1 TTATATTGATTTACTATTAAATTATCAATAATAAACTACTAAA
** **
10773025 TTATGATTGATTTACTATTAAATTATTTATAATTTACTACTAAA
1 TTAT-ATTGATTTACTATTAAATTATCAATAATAAACTACTAAA
10773069 TTA
1 TTA
10773072 ATTTATCAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 4 0.10
43 18 0.45
44 18 0.45
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.48
Consensus pattern (43 bp):
TTATATTGATTTACTATTAAATTATCAATAATAAACTACTAAA
Found at i:10773059 original size:22 final size:23
Alignment explanation
Indices: 10773034--10773077 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
10773024 ATTATGATTG
*
10773034 ATTTACTATTAAATT-ATTTATA
1 ATTTACTACTAAATTAATTTATA
10773056 ATTTACTACTAAATTAATTTAT
1 ATTTACTACTAAATTAATTTAT
10773078 CAGTTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTACTACTAAATTAATTTATA
Found at i:10773072 original size:27 final size:26
Alignment explanation
Indices: 10773041--10773103 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
10773031 TTGATTTACT
*
10773041 ATTAAATTATTTA-TAATTTACTACTAA
1 ATTAAATTA-TCAGTAA-TTACTACTAA
*
10773068 ATTAATTTATCAGTTAATTACTACTAA
1 ATTAAATTATCAG-TAATTACTACTAA
10773095 ATTGAAATT
1 ATT-AAATT
10773104 TACTCACTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 2 0.07
27 21 0.70
28 7 0.23
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (26 bp):
ATTAAATTATCAGTAATTACTACTAA
Found at i:10773543 original size:24 final size:24
Alignment explanation
Indices: 10773513--10773560 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
10773503 GTTATCAAAG
10773513 ATTTACTACTAAATTATCAATAAT
1 ATTTACTACTAAATTATCAATAAT
* * *
10773537 ATTTACTCCTAATTTATGAATAAT
1 ATTTACTACTAAATTATCAATAAT
10773561 TTACCATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (24 bp):
ATTTACTACTAAATTATCAATAAT
Found at i:10773606 original size:22 final size:22
Alignment explanation
Indices: 10773498--10773595 Score: 65
Period size: 22 Copynumber: 4.4 Consensus size: 22
10773488 GTTATTTGCT
* * *
10773498 ATTAAGTTATCAAAGATTTACT
1 ATTAAGTTATAAAATATTTACC
* *
10773520 ACTAAATTATCAATAATATTTACTC
1 ATTAAGTTAT-AA-AATATTTAC-C
* * *
10773545 -CTAATTTAT-GAATAATTTACC
1 ATTAAGTTATAAAAT-ATTTACC
*
10773566 ATTAAGTTATAAAATATTTATC
1 ATTAAGTTATAAAATATTTACC
10773588 ATTAAGTT
1 ATTAAGTT
10773596 TGAAATGATT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
21 4 0.07
22 35 0.59
23 4 0.07
24 16 0.27
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (22 bp):
ATTAAGTTATAAAATATTTACC
Found at i:10773767 original size:22 final size:22
Alignment explanation
Indices: 10773718--10773821 Score: 72
Period size: 22 Copynumber: 4.9 Consensus size: 22
10773708 AATGATTAAC
* * * *
10773718 TAATATACTACTAAATTATCAT
1 TAATTTACTATTAAATTATTAG
*
10773740 TGATTTA-TAATTAAATTATTAG
1 TAATTTACT-ATTAAATTATTAG
**
10773762 TAATTTACTATTATGTTATTAG
1 TAATTTACTATTAAATTATTAG
* * *
10773784 TGATTTACTACTAAGTTA-T--
1 TAATTTACTATTAAATTATTAG
*
10773803 TAATTTACTATTAATTTAT
1 TAATTTACTATTAAATTAT
10773822 CAATGATTTA
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
19 15 0.23
21 2 0.03
22 47 0.72
23 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.50
Consensus pattern (22 bp):
TAATTTACTATTAAATTATTAG
Found at i:10773821 original size:19 final size:19
Alignment explanation
Indices: 10773762--10773821 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
10773752 AAATTATTAG
10773762 TAATTTACTATT-ATGTTAT
1 TAATTTACTATTAAT-TTAT
* *
10773781 TAGTGATTTACTACTAAGTTAT
1 TA---ATTTACTATTAATTTAT
10773803 TAATTTACTATTAATTTAT
1 TAATTTACTATTAATTTAT
10773822 CAATGATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 17 0.52
22 15 0.45
23 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (19 bp):
TAATTTACTATTAATTTAT
Found at i:10774119 original size:35 final size:33
Alignment explanation
Indices: 10774080--10774170 Score: 87
Period size: 35 Copynumber: 2.7 Consensus size: 33
10774070 ACTACTAAAT
*
10774080 TATCAATTATTTACTACCAATTTACATTAATTTAC
1 TATCAATTATTTACTA--AATTTAAATTAATTTAC
* *
10774115 TATCAATTAATTATATTAAATTTAAATTGATTTAC
1 TATCAATT-ATT-TACTAAATTTAAATTAATTTAC
*
10774150 TATTAAATTA-TTACT-AATTTA
1 TA-TCAATTATTTACTAAATTTA
10774171 CTATTAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
32 6 0.12
33 3 0.06
34 1 0.02
35 26 0.54
36 8 0.17
37 4 0.08
ACGTcount: A:0.41, C:0.10, G:0.01, T:0.48
Consensus pattern (33 bp):
TATCAATTATTTACTAAATTTAAATTAATTTAC
Found at i:10774155 original size:22 final size:22
Alignment explanation
Indices: 10774128--10774308 Score: 89
Period size: 22 Copynumber: 8.3 Consensus size: 22
10774118 CAATTAATTA
10774128 TATTAAATT-TAAATTGATTTAC
1 TATTAAATTAT-AATTGATTTAC
* * *
10774150 TATTAAATTATTACTAATTTAC
1 TATTAAATTATAATTGATTTAC
* *
10774172 TATTAAATTATCATTGATTTAT
1 TATTAAATTATAATTGATTTAC
* * *
10774194 TACTAAATTATCAA-TAATTAAC
1 TATTAAATTAT-AATTGATTTAC
* * * **
10774216 TACTAAATTTTACTT-ATTTTT
1 TATTAAATTATAATTGATTTAC
* * ** *
10774237 TGTTAAGTTATCCTTGATTTAG
1 TATTAAATTATAATTGATTTAC
* * **
10774259 TATTATATTATTATACATTTAC
1 TATTAAATTATAATTGATTTAC
* * *
10774281 AACTATATTATAATTGATTTAC
1 TATTAAATTATAATTGATTTAC
*
10774303 CATTAA
1 TATTAA
10774309 GGTGTTATCA
Statistics
Matches: 115, Mismatches: 40, Indels: 8
0.71 0.25 0.05
Matches are distributed among these distances:
21 14 0.12
22 99 0.86
23 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.50
Consensus pattern (22 bp):
TATTAAATTATAATTGATTTAC
Found at i:10774188 original size:44 final size:44
Alignment explanation
Indices: 10774140--10774224 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
10774130 TTAAATTTAA
* * * * *
10774140 ATTGATTTACTATTAAATTATTACTAATTTACTATTAAATTATC
1 ATTGATTTACTACTAAATTATCAATAATTAACTACTAAATTATC
*
10774184 ATTGATTTATTACTAAATTATCAATAATTAACTACTAAATT
1 ATTGATTTACTACTAAATTATCAATAATTAACTACTAAATT
10774225 TTACTTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.47
Consensus pattern (44 bp):
ATTGATTTACTACTAAATTATCAATAATTAACTACTAAATTATC
Found at i:10774378 original size:22 final size:21
Alignment explanation
Indices: 10774353--10774423 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
10774343 TACTAAAAAG
*
10774353 TTATCAATTATTTATTACTGAA
1 TTATC-ATTATTTATTACTAAA
* * *
10774375 TTATCGTTTATTTATTATTAAG
1 TTATC-ATTATTTATTACTAAA
*
10774397 TTATCATTAATTTACTACTAAA
1 TTATCATT-ATTTATTACTAAA
10774419 TTATC
1 TTATC
10774424 GATGATTATT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 2 0.05
22 37 0.95
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (21 bp):
TTATCATTATTTATTACTAAA
Found at i:10774388 original size:44 final size:44
Alignment explanation
Indices: 10774340--10774424 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
10774330 ATTATTACTA
* *
10774340 ATTTACTAAAAAGTTATCAATT-ATTTATTACTGAATTATCGTTT
1 ATTTACTAAAAAGTTATC-ATTAATTTACTACTAAATTATCGTTT
* **
10774384 ATTTATTATTAAGTTATCATTAATTTACTACTAAATTATCG
1 ATTTACTAAAAAGTTATCATTAATTTACTACTAAATTATCG
10774425 ATGATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (44 bp):
ATTTACTAAAAAGTTATCATTAATTTACTACTAAATTATCGTTT
Found at i:10774732 original size:9 final size:9
Alignment explanation
Indices: 10774720--10774746 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
10774710 AAATTAAATA
10774720 AATATATAT
1 AATATATAT
10774729 AATATATAT
1 AATATATAT
10774738 AATATATAT
1 AATATATAT
10774747 TAAGTCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AATATATAT
Found at i:10775369 original size:146 final size:146
Alignment explanation
Indices: 10775095--10775381 Score: 373
Period size: 146 Copynumber: 2.0 Consensus size: 146
10775085 TACTTTCTCC
* * * * * * *
10775095 TTCTTCATAAATATTTTTTTACTAAATGATAACATGGTATATTTTTAATTGTTGATTTATTCTAA
1 TTCTCCATAAAAATTTTTCTACTAAATGAAAACATAGTATATTTTTAATTGTTGACTCATTCTAA
10775160 TTACCACCATTCAAAATAGCTTTTTTGATATTTTGATGCTAATCAACTTCTCCATTTAAAAAGAG
66 TTACCACCATTCAAAATAGCTTTTTTGATATTTTGATGCTAATCAACTTCTCCATTTAAAAAGAG
*
10775225 TAAAGAATATTTCACA
131 TAAAAAATATTTCACA
* *
10775241 TTCTCCATAAAAATTTCTTCTACTAAATGAAAAGATAGTATATTTTTAATTGTT-ACTCATTCTT
1 TTCTCCATAAAAATTT-TTCTACTAAATGAAAACATAGTATATTTTTAATTGTTGACTCATTCTA
** * * * **
10775305 ATTACCATTATTCAAAAT-GACTTTTTTGATATTTTGATG-TCAATTAATTTCTTCATTTGGAAA
65 ATTACCACCATTCAAAATAG-CTTTTTTGATATTTTGATGCT-AATCAACTTCTCCATTTAAAAA
10775368 GAGTAAAAAATATT
128 GAGTAAAAAATATT
10775382 ATAAAAGGTC
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
145 2 0.02
146 86 0.71
147 33 0.27
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (146 bp):
TTCTCCATAAAAATTTTTCTACTAAATGAAAACATAGTATATTTTTAATTGTTGACTCATTCTAA
TTACCACCATTCAAAATAGCTTTTTTGATATTTTGATGCTAATCAACTTCTCCATTTAAAAAGAG
TAAAAAATATTTCACA
Found at i:10776896 original size:32 final size:30
Alignment explanation
Indices: 10776849--10776914 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 30
10776839 AAAGCTTAAT
* **
10776849 TTTTTATTTAAAAAATTTTATTATACATAAA
1 TTTTTATTTAAAAAATATTAAAATACAT-AA
*
10776880 TTTTTATTATATAAAATATTAAAATACATAA
1 TTTTTATT-TAAAAAATATTAAAATACATAA
10776911 TTTT
1 TTTT
10776915 AAAAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTTTATTTAAAAAATATTAAAATACATAA
Found at i:10783448 original size:15 final size:15
Alignment explanation
Indices: 10783430--10783548 Score: 70
Period size: 15 Copynumber: 7.9 Consensus size: 15
10783420 ATTTTGAAGA
10783430 TTTGAATTTTAGGGT
1 TTTGAATTTTAGGGT
*
10783445 TTTGGATTTTAGGGGT
1 TTTGAATTTTA-GGGT
*
10783461 TTTGAATTTTGGGGT
1 TTTGAATTTTAGGGT
* * **
10783476 CTAG-A-TTTAAAG-
1 TTTGAATTTTAGGGT
*
10783488 ATTGAGATTTTAGGGT
1 TTTGA-ATTTTAGGGT
10783504 TTT-AGATTTTAGAGG-
1 TTTGA-ATTTTAG-GGT
*
10783519 TTTGGATTTTAGGGGT
1 TTTGAATTTTA-GGGT
10783535 TTCTG-ATTTTAGGG
1 TT-TGAATTTTAGGG
10783549 GGTTTGGATT
Statistics
Matches: 80, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
12 2 0.03
13 4 0.05
14 2 0.03
15 44 0.55
16 26 0.32
17 2 0.03
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (15 bp):
TTTGAATTTTAGGGT
Found at i:10783462 original size:16 final size:16
Alignment explanation
Indices: 10783430--10783593 Score: 121
Period size: 16 Copynumber: 10.7 Consensus size: 16
10783420 ATTTTGAAGA
*
10783430 TTTGAATTTTA-GGGT
1 TTTGGATTTTAGGGGT
10783445 TTTGGATTTTAGGGGT
1 TTTGGATTTTAGGGGT
*
10783461 TTTGAATTTT-GGGG-
1 TTTGGATTTTAGGGGT
* * **
10783475 TCTAGA-TTTA-AAG-
1 TTTGGATTTTAGGGGT
*
10783488 ATTGAGATTTTA-GGGT
1 TTTG-GATTTTAGGGGT
* *
10783504 TTTAGATTTTAGAGG-
1 TTTGGATTTTAGGGGT
10783519 TTTGGATTTTAGGGGT
1 TTTGGATTTTAGGGGT
*
10783535 TTCT-GATTTTAGGGGG
1 TT-TGGATTTTAGGGGT
* ** *
10783551 TTTGGATTTAAAAGAT
1 TTTGGATTTTAGGGGT
10783567 TTTGGATTTTAGGGGT
1 TTTGGATTTTAGGGGT
10783583 TTTGGATTTTA
1 TTTGGATTTTA
10783594 TAATTAGTGT
Statistics
Matches: 113, Mismatches: 27, Indels: 17
0.72 0.17 0.11
Matches are distributed among these distances:
13 5 0.04
14 5 0.04
15 40 0.35
16 62 0.55
17 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.48
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:10783465 original size:31 final size:30
Alignment explanation
Indices: 10783430--10783593 Score: 111
Period size: 31 Copynumber: 5.4 Consensus size: 30
10783420 ATTTTGAAGA
*
10783430 TTTGAATTTTAGGGTTTTGGATTTTAGGGG
1 TTTGAATTTTAGGGTTTTAGATTTTAGGGG
* * **
10783460 TTTTGAATTTT-GGGGTCTAGA-TTTA-AAG
1 -TTTGAATTTTAGGGTTTTAGATTTTAGGGG
* *
10783488 ATTGAGATTTTAGGGTTTTAGATTTTAGAGG
1 TTTGA-ATTTTAGGGTTTTAGATTTTAGGGG
*
10783519 TTTGGATTTTAGGGGTTTCT-GATTTTAGGGGG
1 TTTGAATTTTA-GGGTTT-TAGATTTTA-GGGG
* * * * *
10783551 TTTGGATTTAAAAGATTTTGGATTTTAGGGG
1 TTTGAATTT-TAGGGTTTTAGATTTTAGGGG
*
10783582 TTTTGGATTTTA
1 -TTTGAATTTTA
10783594 TAATTAGTGT
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
27 4 0.04
28 6 0.06
29 12 0.11
30 17 0.16
31 34 0.32
32 33 0.31
33 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.48
Consensus pattern (30 bp):
TTTGAATTTTAGGGTTTTAGATTTTAGGGG
Found at i:10787717 original size:18 final size:18
Alignment explanation
Indices: 10787694--10787736 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10787684 GTTTAAGGTT
10787694 ATATAAACA-TAGTGTTTG
1 ATATAAACACTA-TGTTTG
*
10787712 ATATAAACACTATGTTTT
1 ATATAAACACTATGTTTG
10787730 ATATAAA
1 ATATAAA
10787737 AATAACTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (18 bp):
ATATAAACACTATGTTTG
Found at i:10788307 original size:3 final size:3
Alignment explanation
Indices: 10788301--10788337 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10788291 GTTGTTGTTG
10788301 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10788338 ACTTTCCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10788616 original size:15 final size:15
Alignment explanation
Indices: 10788598--10788626 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10788588 TTTGGATTTA
10788598 AAATTTCTAGGTTTC
1 AAATTTCTAGGTTTC
10788613 AAATTTCTAGGTTT
1 AAATTTCTAGGTTT
10788627 AAAGATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (15 bp):
AAATTTCTAGGTTTC
Found at i:10789156 original size:5 final size:5
Alignment explanation
Indices: 10789148--10789232 Score: 68
Period size: 5 Copynumber: 16.6 Consensus size: 5
10789138 GTTTTTGTTT
* * *
10789148 TTTTA TTTTA TTTTA TTTTA TATTA TTTT- TTTAA TTTTCA TTTT- TTTAA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA
*
10789197 CTTTT- TCTTA TTTTA TTTTTA TTTTCA TTTTTA TTT
1 -TTTTA TTTTA TTTTA -TTTTA TTTT-A -TTTTA TTT
10789233 AAGTTATCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
4 9 0.14
5 36 0.56
6 15 0.23
7 4 0.06
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:10794639 original size:2 final size:2
Alignment explanation
Indices: 10794626--10794655 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
10794616 AATTTTAAGA
*
10794626 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10794656 GGATCATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:10798506 original size:12 final size:12
Alignment explanation
Indices: 10798489--10798521 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
10798479 ATTATAAAAT
10798489 TTTAAATTTTAA
1 TTTAAATTTTAA
10798501 TTTAAA-TTTAA
1 TTTAAATTTTAA
*
10798512 ATTAAATTTT
1 TTTAAATTTT
10798522 TATTCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTAAATTTTAA
Found at i:10798621 original size:33 final size:34
Alignment explanation
Indices: 10798584--10798665 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 34
10798574 TTTGATTTAT
*
10798584 AAATTTTTAATTTTTATAAAT-TATTTTAATATA
1 AAATTTTTAATTTTTATAAATAAATTTTAATATA
* *
10798617 AAA-TTTTAATATATT-TGAATAAATTTTAATATA
1 AAATTTTTAAT-TTTTATAAATAAATTTTAATATA
*
10798650 AAATTATT-ATTTTTAT
1 AAATTTTTAATTTTTAT
10798666 TTTATAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
32 14 0.35
33 23 0.57
34 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (34 bp):
AAATTTTTAATTTTTATAAATAAATTTTAATATA
Found at i:10804327 original size:50 final size:50
Alignment explanation
Indices: 10804251--10804345 Score: 181
Period size: 50 Copynumber: 1.9 Consensus size: 50
10804241 TTTTCTAGTA
10804251 CTATGTTATCAACTGGACCATCCTACAATAGGATGGATGGGGTTTGGCTC
1 CTATGTTATCAACTGGACCATCCTACAATAGGATGGATGGGGTTTGGCTC
*
10804301 CTATGTTATCAACTGGACCATTCTACAATAGGATGGATGGGGTTT
1 CTATGTTATCAACTGGACCATCCTACAATAGGATGGATGGGGTTT
10804346 CTTTTGAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (50 bp):
CTATGTTATCAACTGGACCATCCTACAATAGGATGGATGGGGTTTGGCTC
Found at i:10805285 original size:10 final size:10
Alignment explanation
Indices: 10805242--10805275 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
10805232 ATTTATAAAT
10805242 CTTTCCTTTT-
1 CTTT-CTTTTC
10805252 CTTTCTTTTC
1 CTTTCTTTTC
10805262 CTTTCTTTTC
1 CTTTCTTTTC
10805272 CTTT
1 CTTT
10805276 TCCTTCCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.22
10 18 0.78
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (10 bp):
CTTTCTTTTC
Found at i:10809434 original size:16 final size:16
Alignment explanation
Indices: 10809413--10809469 Score: 68
Period size: 14 Copynumber: 3.8 Consensus size: 16
10809403 TATTTATTTA
10809413 TATATATTTATATAAT
1 TATATATTTATATAAT
*
10809429 TATATATTTAAAT-AT
1 TATATATTTATATAAT
*
10809444 T-TATATTTA-AAAAT
1 TATATATTTATATAAT
10809458 TATAT-TTTATAT
1 TATATATTTATAT
10809470 TTAAAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 1 0.03
14 15 0.43
15 7 0.20
16 12 0.34
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATATATTTATATAAT
Found at i:10809462 original size:13 final size:14
Alignment explanation
Indices: 10809415--10809464 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 14
10809405 TTTATTTATA
*
10809415 TATATTTATATAATT
1 TATATTTAAATAA-T
*
10809430 ATATATTTAAATATT
1 -TATATTTAAATAAT
10809445 TATATTTAAA-AAT
1 TATATTTAAATAAT
10809458 TATATTT
1 TATATTT
10809465 TATATTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.29
14 10 0.32
15 1 0.03
16 11 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATATTTAAATAAT
Found at i:10809468 original size:20 final size:21
Alignment explanation
Indices: 10809439--10809488 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
10809429 TATATATTTA
10809439 AATA-TTTATATTTAAAA-AT
1 AATATTTTATATTTAAAATAT
*
10809458 TATATTTTATATTTAAAATAT
1 AATATTTTATATTTAAAATAT
10809479 AATATTTTAT
1 AATATTTTAT
10809489 TAATTTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 3 0.11
20 13 0.48
21 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AATATTTTATATTTAAAATAT
Found at i:10810734 original size:3 final size:3
Alignment explanation
Indices: 10810726--10810762 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10810716 ATTAACAGAC
10810726 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10810763 GCGAATGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:10811249 original size:2 final size:2
Alignment explanation
Indices: 10811242--10811266 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10811232 TAATGACTAC
10811242 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10811267 AAAACAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10814980 original size:24 final size:22
Alignment explanation
Indices: 10814953--10815003 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
10814943 ATATATCTTA
*
10814953 AAAAAACATAAAACAAAAATAAAT
1 AAAAAACATAAAA-AAAAA-AAAC
*
10814977 AAAAACCATAAAAAAAAAAAAC
1 AAAAAACATAAAAAAAAAAAAC
10814999 AAAAA
1 AAAAA
10815004 GGACTGGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 8 0.32
23 5 0.20
24 12 0.48
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.08
Consensus pattern (22 bp):
AAAAAACATAAAAAAAAAAAAC
Found at i:10825907 original size:23 final size:23
Alignment explanation
Indices: 10825881--10825928 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
10825871 CTATCTCTTG
10825881 TTTATATTCAT-ATATTGTGCTTA
1 TTTATATTCATAAT-TTGTGCTTA
* *
10825904 TTTATATTGATAATTTGTGGTTA
1 TTTATATTCATAATTTGTGCTTA
10825927 TT
1 TT
10825929 GAATATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.25, C:0.04, G:0.12, T:0.58
Consensus pattern (23 bp):
TTTATATTCATAATTTGTGCTTA
Found at i:10830398 original size:32 final size:34
Alignment explanation
Indices: 10830347--10830426 Score: 123
Period size: 32 Copynumber: 2.5 Consensus size: 34
10830337 GCTTAATCTA
*
10830347 TTTTCCTTTATTTTG-GTATTTAATTCTCTTA-T
1 TTTTCATTTATTTTGAGTATTTAATTCTCTTACT
10830379 TTTTCATTT-TTTTGAGTATTTAATTCTCTTACT
1 TTTTCATTTATTTTGAGTATTTAATTCTCTTACT
10830412 TTTT-ATTTATTTTGA
1 TTTTCATTTATTTTGA
10830427 ATCTTAAATC
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
31 5 0.11
32 28 0.64
33 11 0.25
ACGTcount: A:0.17, C:0.10, G:0.06, T:0.66
Consensus pattern (34 bp):
TTTTCATTTATTTTGAGTATTTAATTCTCTTACT
Found at i:10831268 original size:26 final size:26
Alignment explanation
Indices: 10831220--10831296 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
10831210 TAATATTAAA
* *
10831220 ATATTGAAAGTTTTTTATGATTAAAAT
1 ATATTG-AAGTTATTTATAATTAAAAT
*
10831247 ATATTGAAGTTATCTATAATTAAAAT
1 ATATTGAAGTTATTTATAATTAAAAT
* *
10831273 ATATTGAAATTATTTATTATTAAA
1 ATATTGAAGTTATTTATAATTAAA
10831297 GTTATTAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 38 0.86
27 6 0.14
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (26 bp):
ATATTGAAGTTATTTATAATTAAAAT
Found at i:10831365 original size:19 final size:19
Alignment explanation
Indices: 10831299--10831368 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
10831289 TTATTAAAGT
*
10831299 TATTAATATTTAAAAAAAT-
1 TATTAAT-TTTAAAATAATA
10831318 TA-T-ATTTTAATAATAATA
1 TATTAATTTTAA-AATAATA
* * *
10831336 T-TTTATATTAAAATATTA
1 TATTAATTTTAAAATAATA
10831354 TATTAATTTTAAAAT
1 TATTAATTTTAAAAT
10831369 GCTTAAACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
16 5 0.12
17 7 0.17
18 10 0.24
19 19 0.46
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAATTTTAAAATAATA
Found at i:10831498 original size:21 final size:21
Alignment explanation
Indices: 10831474--10831542 Score: 50
Period size: 26 Copynumber: 3.0 Consensus size: 21
10831464 ATAAAAATAG
10831474 TAATATTTATTATTAAAGTAT
1 TAATATTTATTATTAAAGTAT
*
10831495 TAATCATATTTATACTATTAAAATAGT
1 T-A--ATATTTAT--TATTAAAGTA-T
*
10831522 T-ATATTTAATATTGAAAGTAT
1 TAATATTTATTATT-AAAGTAT
10831543 CTATTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
21 6 0.16
22 6 0.16
23 7 0.18
24 8 0.21
26 9 0.24
27 2 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (21 bp):
TAATATTTATTATTAAAGTAT
Found at i:10831674 original size:18 final size:18
Alignment explanation
Indices: 10831643--10831708 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
10831633 ATATTTTAAA
10831643 TTATT-AAA-AATATTCAT
1 TTATTAAAATAATATT-AT
10831660 TT-TTAAAATAATATTAT
1 TTATTAAAATAATATTAT
**
10831677 TATATTATTAT-ATATTAT
1 T-TATTAAAATAATATTAT
10831695 TTATTAAAATAATA
1 TTATTAAAATAATA
10831709 AAAATATTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
16 2 0.05
17 15 0.38
18 18 0.45
19 5 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TTATTAAAATAATATTAT
Done.