Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 64 of 84
Found at i:14374480 original size:9 final size:9
Alignment explanation
Indices: 14374456--14374499 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
14374446 TGTTTTTATT
14374456 TTTTATATT-
1 TTTTAT-TTA
14374465 TTTTATTTA
1 TTTTATTTA
14374474 TTTTATTTA
1 TTTTATTTA
*
14374483 -GTTATTTA
1 TTTTATTTA
14374491 TTTTATTTA
1 TTTTATTTA
14374500 GTTATTACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 9 0.29
9 22 0.71
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTTATTTA
Found at i:14374487 original size:17 final size:17
Alignment explanation
Indices: 14374467--14374505 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14374457 TTTATATTTT
14374467 TTATTTATTTTATTTAG
1 TTATTTATTTTATTTAG
14374484 TTATTTATTTTATTTAG
1 TTATTTATTTTATTTAG
14374501 TTATT
1 TTATT
14374506 ACCAAGCCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (17 bp):
TTATTTATTTTATTTAG
Found at i:14374505 original size:13 final size:13
Alignment explanation
Indices: 14374449--14374499 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
14374439 ACCAAGCTGT
14374449 TTTTATTT-TTTA
1 TTTTATTTATTTA
14374461 TATTT-TTTATTTA
1 T-TTTATTTATTTA
*
14374474 TTTTATTTAGTTA
1 TTTTATTTATTTA
14374487 -TTTATTTTATTTA
1 TTTTA-TTTATTTA
14374500 GTTATTACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 11 0.33
13 22 0.67
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:14374541 original size:128 final size:128
Alignment explanation
Indices: 14374378--14374621 Score: 461
Period size: 128 Copynumber: 1.9 Consensus size: 128
14374368 GAGCTAATCC
*
14374378 ACCAAGCTGAGTCTCCAAACTGCTTTCTATGCCTGAAGCCGTGCCATACCAAGCTGCTTCAACCA
1 ACCAAGCCGAGTCTCCAAACTGCTTTCTATGCCTGAAGCCGTGCCATACCAAGCTGCTTCAACCA
*
14374443 AGCTGTTTTTATTTTTTATATTTTTTATTTATTTTATTTAGTTATTTATTTTATTTAGTTATT
66 AGCTGTTTCTATTTTTTATATTTTTTATTTATTTTATTTAGTTATTTATTTTATTTAGTTATT
*
14374506 ACCAAGCCGAGTCTCCAAACTGCTTTCTATGCCTGAAGCCGTGCCATACCAAGCTGCTTCAACCG
1 ACCAAGCCGAGTCTCCAAACTGCTTTCTATGCCTGAAGCCGTGCCATACCAAGCTGCTTCAACCA
14374571 AGCTGTTTCTATTTTTTATATTTTTTATTTATTTTATTTAGTTATTTATTT
66 AGCTGTTTCTATTTTTTATATTTTTTATTTATTTTATTTAGTTATTTATTT
14374622 ATGTGTTTGA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 113 1.00
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (128 bp):
ACCAAGCCGAGTCTCCAAACTGCTTTCTATGCCTGAAGCCGTGCCATACCAAGCTGCTTCAACCA
AGCTGTTTCTATTTTTTATATTTTTTATTTATTTTATTTAGTTATTTATTTTATTTAGTTATT
Found at i:14379386 original size:23 final size:23
Alignment explanation
Indices: 14379331--14379374 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
14379321 TATCAATAAT
14379331 GAATGAAAAAAAATTAAAAAAAA
1 GAATGAAAAAAAATTAAAAAAAA
*
14379354 GAAAGAAAAAAAATTAAAAAA
1 GAATGAAAAAAAATTAAAAAA
14379375 TGAAAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (23 bp):
GAATGAAAAAAAATTAAAAAAAA
Found at i:14380211 original size:21 final size:20
Alignment explanation
Indices: 14380185--14380229 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14380175 TTAAAAAATG
14380185 AAAATGAAAATATGAA-AGAAA
1 AAAATGAAAA-A-GAAGAGAAA
*
14380206 AAAATGCAAAAGAAGAGAAA
1 AAAATGAAAAAGAAGAGAAA
14380226 AAAA
1 AAAA
14380230 AGACTCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 10 0.45
21 9 0.41
ACGTcount: A:0.73, C:0.02, G:0.16, T:0.09
Consensus pattern (20 bp):
AAAATGAAAAAGAAGAGAAA
Found at i:14380987 original size:29 final size:28
Alignment explanation
Indices: 14380953--14381057 Score: 108
Period size: 29 Copynumber: 3.6 Consensus size: 28
14380943 ATCAATAATG
* *
14380953 AATGAAAAAAAAAGTACAAAAT-AAATGAA
1 AATGAAAAAAAAAGAAAAAAATGAAA--AA
14380982 AATGAAAAAATAAAGAAAAAAATGAAAAA
1 AATGAAAAAA-AAAGAAAAAAATGAAAAA
*
14381011 AATG-AAAAAAATGAAAAAAATG-AAAA
1 AATGAAAAAAAAAGAAAAAAATGAAAAA
14381037 AATGAAATGAAAAAATGAAAA
1 AATGAAA--AAAAAA-GAAAA
14381058 TGAAAAGATG
Statistics
Matches: 66, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
26 8 0.12
27 14 0.21
28 5 0.08
29 21 0.32
30 15 0.23
31 3 0.05
ACGTcount: A:0.75, C:0.01, G:0.11, T:0.12
Consensus pattern (28 bp):
AATGAAAAAAAAAGAAAAAAATGAAAAA
Found at i:14380989 original size:26 final size:26
Alignment explanation
Indices: 14380953--14381036 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 26
14380943 ATCAATAATG
14380953 AATGAAAAAA-AAAGTACAAAATAAATGAA
1 AATGAAAAAATAAAG---AAAA-AAATGAA
14380982 AATGAAAAAATAAAGAAAAAAATGAAAAA
1 AATGAAAAAATAAAGAAAAAAATG---AA
*
14381011 AATG-AAAAA-AATGAAAAAAATGAA
1 AATGAAAAAATAAAGAAAAAAATGAA
14381035 AA
1 AA
14381037 AATGAAATGA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
24 4 0.08
26 5 0.10
27 16 0.32
28 5 0.10
29 16 0.32
30 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.11, T:0.12
Consensus pattern (26 bp):
AATGAAAAAATAAAGAAAAAAATGAA
Found at i:14380991 original size:8 final size:8
Alignment explanation
Indices: 14380980--14381070 Score: 75
Period size: 8 Copynumber: 11.1 Consensus size: 8
14380970 AAAATAAATG
14380980 AAAATGAA
1 AAAATGAA
14380988 AAAATAAAGAAA
1 AAAAT---GA-A
14381000 AAAATGAAA
1 AAAATG-AA
14381009 AAAATGAAA
1 AAAATG-AA
14381018 AAAATGAAA
1 AAAATG-AA
14381027 AAAATGAA
1 AAAATGAA
14381035 AAAATG--
1 AAAATGAA
14381041 -AAATGAA
1 AAAATGAA
14381048 AAAATG--
1 AAAATGAA
14381054 AAAATGAA
1 AAAATGAA
*
14381062 AAGATGAA
1 AAAATGAA
14381070 A
1 A
14381071 GAAAAAAATG
Statistics
Matches: 72, Mismatches: 1, Indels: 20
0.77 0.01 0.22
Matches are distributed among these distances:
5 5 0.07
6 6 0.08
8 26 0.36
9 26 0.36
10 1 0.01
11 2 0.03
12 6 0.08
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (8 bp):
AAAATGAA
Found at i:14380991 original size:18 final size:17
Alignment explanation
Indices: 14380970--14381075 Score: 74
Period size: 18 Copynumber: 5.8 Consensus size: 17
14380960 AAAAAAGTAC
14380970 AAAATAAATGAAAATGAA
1 AAAATAAA-GAAAATGAA
14380988 AAAATAAAGAAAAAAATGAAA
1 AAAATAAAG---AAAATG-AA
14381009 AAAATGAAA-AAAATGAAA
1 AAAAT-AAAGAAAATG-AA
*
14381027 AAAATGAA-AAAATGAA
1 AAAATAAAGAAAATGAA
14381043 ATGAAA-AAATGAAAATGAA
1 A--AAATAAA-GAAAATGAA
*
14381062 AAGATGAAAGAAAA
1 AAAAT-AAAGAAAA
14381076 AAATGCAAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
16 3 0.04
17 13 0.18
18 30 0.41
19 12 0.16
20 6 0.08
21 7 0.09
22 3 0.04
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (17 bp):
AAAATAAAGAAAATGAA
Found at i:14381008 original size:9 final size:9
Alignment explanation
Indices: 14380980--14381043 Score: 94
Period size: 9 Copynumber: 7.0 Consensus size: 9
14380970 AAAATAAATG
14380980 AAAATGAAAA
1 AAAATG-AAA
*
14380990 AATAAAGAAA
1 AA-AATGAAA
14381000 AAAATGAAA
1 AAAATGAAA
14381009 AAAATGAAA
1 AAAATGAAA
14381018 AAAATGAAA
1 AAAATGAAA
14381027 AAAATG-AA
1 AAAATGAAA
14381035 AAAATGAAA
1 AAAATGAAA
14381044 TGAAAAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
8 8 0.16
9 32 0.64
10 7 0.14
11 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAATGAAA
Found at i:14381038 original size:810 final size:804
Alignment explanation
Indices: 14379215--14381704 Score: 3063
Period size: 810 Copynumber: 3.0 Consensus size: 804
14379205 GTCTATTTTG
* * *
14379215 ATCAAATGTGAATGCTCGAATTGAATGATCATCTATTGAACTAAAGCATGCTTAT-AGTGAAATC
1 ATCAAATGTGAATGCTCGAATTGAATGATCATGTATTGAACTAAGGCATGCTTATGA-TGAAACC
*
14379279 AGGGAATCATGAGACATGTTTTAAAGATTAATGTGTGTGAGATATCAATAATGAATGAAAAAAAA
65 AGGGAATCATGCGACATGTTTTAAAGATTAATGTGTGTGAGATATCAATAATGAATGAAAAAAAA
* * *
14379344 TTAAAAAAAAGAAAGAAAAAAAATTAAAAAATGAAAATG-AAAAGATGAAAGAAAAAATACAAAA
130 GTAAAAAAAAG-AA-AAAAAAAA-TAAAAAA-GAAAATGAAAAAAATG--A-AAAAAAT-GAAAA
* * *
14379408 AAAGAGAAAGAAAGACTCAAATTGAAAACCCGAAATGGCGATTTGAGTAGAAAAATATCTTAGTT
187 AAAGA-AAAAAAAGACTCAAATTGAAAACTCGAAATGGCGATTTGAGTAGAAAAATATCTTAGAT
* * * *
14379473 GAAATTTGGATGATAGTTCAATATGTGAAAGATTAATCCGAAGATCCTCTGGAGCT-GGAGCAAA
251 GAAA-TTGGATGATAGTTCAATATGTGAAAGATTAATCCGAAGATCCTTTAGAGCTAAGTGCAAA
* *
14379537 ATTTGATGAGCTCAAAATGATTTCGGCAGTCAATGAAATGAGTTTTTGAAAAAGAATTCTAGATT
315 GTTTGATGAGCTCAAAATGATTTCGACAGTCAATGAAATGAGTTTTTGAAAAAGAATTCTAGATT
* * *
14379602 AATGTTCAAAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACATGCATTGA
380 AATATTCAGAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACATGCATCGA
14379667 ACCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTTTCTCTCTA
445 ACCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTTTCTCTCTA
*
14379732 TTCACCTTGTACTCTCTTATCCCTAGAATAAATCAAAAACATTTATTATTGCATTATATTCGTCA
510 TTCACCTTGTACTCTCTTATCCCTAGAATAAATCAAAAACATTTATGATTGCATTATATTCGTCA
14379797 TGATTTGGAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTTTGAAAAGA
575 TGATTTGGAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTTTGAAAAGA
14379862 AATCAAGATGATA-GGGGCAAAAAAAATGAAGAGATGGTAGAAACCT-AAAAGATGATTTGAAAA
640 AATCAAGATGATAGGGGGCAAAAAAAATGAAGAGATGGTAGAAACCTGAAAAGATGATTTGAAAA
* **
14379925 GACACACAATGTGACCGGGTGATGAATATTATGATGGATTGGTCGACATAACTTGTGAGATGTGA
705 GACACACGATGTGACCAAGTGATGAATATTATGATGGATTGGTCGACATAACTTGTGAGATGTGA
*
14379990 TTAAATGATGGAAATAATATGGATCAATAAACGAA
770 TTAAATGATGGAAATAATGTGGATCAATAAACGAA
* * * *
14380025 ATCAAATGTGAATACTTGAATTGAATAATCATGTATTGAACTAAGGCATGCTTATGGTGAAACCA
1 ATCAAATGTGAATGCTCGAATTGAATGATCATGTATTGAACTAAGGCATGCTTATGATGAAACCA
*
14380090 GGGAATCATGCGACATGTTTCAAAGATTAATGTGTGTGAGATATCAA-AATGAATGAAAAAAAAG
66 GGGAATCATGCGACATGTTTTAAAGATTAATGTGTGTGAGATATCAATAATGAATGAAAAAAAA-
* * *
14380154 GAAAAAAAAAGAAAAAAGAAATTAAAAAATGAAAATGAAAATATGAAAGAAAAAAATGCAAAAGA
130 GTAAAAAAAAGAAAAAA-AAAATAAAAAA-GAAAATGAAAA-A--AATGAAAAAAATG-AAAA-A
*
14380219 AGAGAAAAAAAAGACTCAAATTGAAAACTCGAAATGGCGATTTGAGTAGAAAAATATCTTAGCTG
188 A-AGAAAAAAAAGACTCAAATTGAAAACTCGAAATGGCGATTTGAGTAGAAAAATATCTTAGATG
14380284 AAAGTTGGATGATAGTTCAATATGTGAAAGATTAATCCGAAGATCCTTTAGAGCTAAG-GCAAAG
252 AAA-TTGGATGATAGTTCAATATGTGAAAGATTAATCCGAAGATCCTTTAGAGCTAAGTGCAAAG
14380348 TTTGATGAGCTCAAAATGATTTCGACAGTCAATGAAATGAGTTTTTGAAAAAGAATTCTAGATTA
316 TTTGATGAGCTCAAAATGATTTCGACAGTCAATGAAATGAGTTTTTGAAAAAGAATTCTAGATTA
*
14380413 ATATTCAGAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACATACATCGAA
381 ATATTCAGAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACATGCATCGAA
14380478 CCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTTTCTCTCTAT
446 CCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTTTCTCTCTAT
* *
14380543 TCACCTTGTACTCTCTTATCCCTAGAATAAATCAAAAATATTTATGATTGCATTTTATTCGTCAT
511 TCACCTTGTACTCTCTTATCCCTAGAATAAATCAAAAACATTTATGATTGCATTATATTCGTCAT
*
14380608 GATTTGAAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTTTGAAAAGAA
576 GATTTGGAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTTTGAAAAGAA
*
14380673 ATCAAGATGATAGGGGGCAAAAAAAATGAAGAGATGGTAGAAACCTGAAAAGATGATTTCAAAAG
641 ATCAAGATGATAGGGGGCAAAAAAAATGAAGAGATGGTAGAAACCTGAAAAGATGATTTGAAAAG
* * *
14380738 AAATACGATGTGACCAAGTGATGAATATTATGATGGATTGGTCAACATAACTTGTGAGATGTGAT
706 ACACACGATGTGACCAAGTGATGAATATTATGATGGATTGGTCGACATAACTTGTGAGATGTGAT
* *
14380803 TAAATGATAGAAAAAATGTGGATCAATAAACGAA
771 TAAATGATGGAAATAATGTGGATCAATAAACGAA
*
14380837 ATCAAATGTGAATGCTCAAATTGAATGATCATGTATTGAACTAAGGCATGCTTATGATG-AACCA
1 ATCAAATGTGAATGCTCGAATTGAATGATCATGTATTGAACTAAGGCATGCTTATGATGAAACCA
* * *
14380901 GGGAATCATGCGGCATGTTTTAAAGATTAATATGTGTGACATATCAATAATGAATGAAAAAAAAA
66 GGGAATCATGCGACATGTTTTAAAGATTAATGTGTGTGAGATATCAATAATGAATG-AAAAAAAA
14380966 GTACAAAATAAATGAAAATGAAAAAATAAAGAAA-AAAATGAAAAAAATGAAAAAAATGAAAAAA
130 GTA-AAAA-AAA-GAAAA--AAAAAATAAA-AAAGAAAATGAAAAAAATGAAAAAAATGAAAAAA
* * * * * **
14381030 ATGAAAAAATGAA-A-TGAAAAAATGAAAA-T-GAAA---AGA--TGA-AAGAAAAAAATGCAAA
189 A-GAAAAAA--AAGACT--CAAATTGAAAACTCGAAATGGCGATTTGAGTAGAAAAATAT-C-TT
* ** * * * ** * * * *
14381085 AGAAGAGAAAAGAGA-GACTCAAATTGAAAACCTGAAATGACGATTTGAGT-AGAAAAAT-ATCT
247 AGATGA-AATTG-GATGA-T--AGTTCAATATGTG-AA--A-GA-TT-AATCCG-AAGATCCT-T
* * * * * * * * ** **
14381147 TAGTTG-AAAGTTGGATGATAGTTTAAT-ATG-TGAAAGATTAATCCGA-AGATCTTCTGGAGTT
299 TAG-AGCTAAG-TGCA--A-AGTTTGATGA-GCTCAAA-ATGATTTCGACAG-TC-AAT-GAAAT
* * * *
14381208 GGGGCAAAGTTTGATGAGCTCAAAATGATTTCGGCAGTCAATGAAATGAGTTTTTGAAAAAGAAT
354 ---G---AGTTT-TTGA----AAAA-GAATTC--TAG---AT-TAAT-A-----T----------
14381273 TCTAGATTAATGTTCAGAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACA
385 -------------TCAGAATTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACA
14381338 TGCATCGAACCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTT
437 TGCATCGAACCTATTTCTACCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTT
* * *
14381403 TCTCTCTATTCACCTTATACTCTCTTATCCTTAGAATAAATTAAAAACATTTATGATTGCATTAT
502 TCTCTCTATTCACCTTGTACTCTCTTATCCCTAGAATAAATCAAAAACATTTATGATTGCATTAT
14381468 ATTCGTCATGATTTGGAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTT
567 ATTCGTCATGATTTGGAATGATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTT
*
14381533 TGAAAAGAAATCAAGATGATAGGGGGC-AAAAAAATGAAGAGATGGTAAAAACCTGAAAAGATGA
632 TGAAAAGAAATCAAGATGATAGGGGGCAAAAAAAATGAAGAGATGGTAGAAACCTGAAAAGATGA
14381597 TTTGAAAAGACACACGATGTGACCAAGTGATGAATATTATGATGGATTGGTCGACATAACTTGTG
697 TTTGAAAAGACACACGATGTGACCAAGTGATGAATATTATGATGGATTGGTCGACATAACTTGTG
*
14381662 AAATGTGATTAAATGATGGAAATAATGTGGATCAATAAACGAA
762 AGATGTGATTAAATGATGGAAATAATGTGGATCAATAAACGAA
14381705 TTTCATTCTG
Statistics
Matches: 1476, Mismatches: 105, Indels: 140
0.86 0.06 0.08
Matches are distributed among these distances:
804 9 0.01
805 4 0.00
806 7 0.00
807 7 0.00
808 19 0.01
809 44 0.03
810 573 0.39
811 91 0.06
812 197 0.13
813 14 0.01
814 8 0.01
815 28 0.02
816 8 0.01
817 7 0.00
819 8 0.01
820 17 0.01
821 1 0.00
822 3 0.00
825 1 0.00
828 5 0.00
829 3 0.00
833 4 0.00
834 5 0.00
836 2 0.00
839 2 0.00
840 3 0.00
841 1 0.00
846 1 0.00
868 137 0.09
869 267 0.18
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (804 bp):
ATCAAATGTGAATGCTCGAATTGAATGATCATGTATTGAACTAAGGCATGCTTATGATGAAACCA
GGGAATCATGCGACATGTTTTAAAGATTAATGTGTGTGAGATATCAATAATGAATGAAAAAAAAG
TAAAAAAAAGAAAAAAAAAATAAAAAAGAAAATGAAAAAAATGAAAAAAATGAAAAAAAGAAAAA
AAAGACTCAAATTGAAAACTCGAAATGGCGATTTGAGTAGAAAAATATCTTAGATGAAATTGGAT
GATAGTTCAATATGTGAAAGATTAATCCGAAGATCCTTTAGAGCTAAGTGCAAAGTTTGATGAGC
TCAAAATGATTTCGACAGTCAATGAAATGAGTTTTTGAAAAAGAATTCTAGATTAATATTCAGAA
TTGTTTGAACATTCATTGTTTTTATATACCATTGATCCTAATGACATGCATCGAACCTATTTCTA
CCCCCATTTATTTTTGTACTAGACTTGTTCTTGTATTGATTACCTTTCTCTCTATTCACCTTGTA
CTCTCTTATCCCTAGAATAAATCAAAAACATTTATGATTGCATTATATTCGTCATGATTTGGAAT
GATAATTAATGAATGATAATATGCATAAAAGATTCTTGTATTATTTTGAAAAGAAATCAAGATGA
TAGGGGGCAAAAAAAATGAAGAGATGGTAGAAACCTGAAAAGATGATTTGAAAAGACACACGATG
TGACCAAGTGATGAATATTATGATGGATTGGTCGACATAACTTGTGAGATGTGATTAAATGATGG
AAATAATGTGGATCAATAAACGAA
Found at i:14381046 original size:13 final size:13
Alignment explanation
Indices: 14381028--14381077 Score: 75
Period size: 13 Copynumber: 3.8 Consensus size: 13
14381018 AAAATGAAAA
14381028 AAATGAAAAAATG
1 AAATGAAAAAATG
14381041 AAATGAAAAAATG
1 AAATGAAAAAATG
*
14381054 AAAATGAAAAGATG
1 -AAATGAAAAAATG
14381068 AAA-GAAAAAA
1 AAATGAAAAAA
14381078 ATGCAAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 6 0.18
13 16 0.47
14 12 0.35
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
AAATGAAAAAATG
Found at i:14381057 original size:27 final size:26
Alignment explanation
Indices: 14380975--14381077 Score: 61
Period size: 27 Copynumber: 3.7 Consensus size: 26
14380965 AGTACAAAAT
14380975 AAATGAAAATGAAAAAAT-AAAGAAAA
1 AAATGAAAATGAAAAAATGAAAG-AAA
14381001 AAATGAAAAAAATGAAAAAAATGAAAAAAATGAAA
1 AAATG---AAAATG-AAAAAATG----AAA-GAAA
14381036 AAATG-AAATGAAAAAATGAAAATGAAA
1 AAATGAAAATGAAAAAATG-AAA-GAAA
*
14381063 AGATG-AAA-GAAAAAA
1 AAATGAAAATGAAAAAA
14381078 ATGCAAAAGA
Statistics
Matches: 66, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
26 12 0.18
27 16 0.24
29 6 0.09
30 15 0.23
31 5 0.08
35 11 0.17
36 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.12
Consensus pattern (26 bp):
AAATGAAAATGAAAAAATGAAAGAAA
Found at i:14381078 original size:27 final size:28
Alignment explanation
Indices: 14381027--14381085 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 28
14381017 AAAAATGAAA
14381027 AAAATGAAAAAATGAAATGAAAAAATG-
1 AAAATGAAAAAATGAAATGAAAAAATGC
*
14381054 AAAATGAAAAGATGAAA-GAAAAAAATGC
1 AAAATGAAAAAATGAAATG-AAAAAATGC
14381082 AAAA
1 AAAA
14381086 GAAGAGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 1 0.03
27 24 0.83
28 4 0.14
ACGTcount: A:0.71, C:0.02, G:0.15, T:0.12
Consensus pattern (28 bp):
AAAATGAAAAAATGAAATGAAAAAATGC
Found at i:14382753 original size:84 final size:85
Alignment explanation
Indices: 14382553--14383019 Score: 450
Period size: 84 Copynumber: 5.6 Consensus size: 85
14382543 CATTATTTAC
* * * * * * *
14382553 TTTTCCAAAGTTATTGAGCCTTTGTTTAAATGAGCTTTGTTTATTTTTTTCAAAGTTGTTGAGCC
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTA--TTTTTCAAAGTCGTTAAGCC
*
14382618 TCTGTTTAGA-AAAGCTTTATT
64 TCTGTTTAGAGGAAGCTTTATT
* * * * * * *
14382639 TTTTT-GAAGTTGTTGAGTCTCTATTTAGAGGAGCTTTATTTATTTTCCAAAGTCATTAAGCCTT
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTC
14382703 TGTTTAGAGGAAG-TTTATT
66 TGTTTAGAGGAAGCTTTATT
* * * *
14382722 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTT-TTTTTCACAGTCATTAAGCCTC
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTC
*
14382786 TGTTTGGAGG-AGCTTTA-T
66 TGTTTAGAGGAAGCTTTATT
* * *
14382804 TTTTTCAAAGTCATTGAG-CTTTGTTTAGAGGAGCTTTATTCT-TTTTTTAAAGTCGTTAAGCCT
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATT-TATTTTTCAAAGTCGTTAAGCCT
* * *
14382867 CCGTTTCGAGG-ATCTTTATT
65 CTGTTTAGAGGAAGCTTTATT
** * * * * * *
14382887 TTTTTTGAAGTTATTTAGCCTCTGTTTAGATGAGCTTTATTTATTTGTCAAAGTTGTTGAGCCTT
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTC
* *
14382952 TATTTAG-GGGAGCTTTATT
66 TGTTTAGAGGAAGCTTTATT
** * * ** *
14382971 TTTTTCAAAGTCGTTGAGCCTTTGTTTAGCGGAGCCATGTTTATTTTTC
1 TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTC
14383020 CAAACATTGT
Statistics
Matches: 315, Mismatches: 58, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
81 20 0.06
82 53 0.17
83 86 0.27
84 123 0.39
85 29 0.09
86 4 0.01
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (85 bp):
TTTTTCAAAGTTATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTC
TGTTTAGAGGAAGCTTTATT
Found at i:14382865 original size:165 final size:166
Alignment explanation
Indices: 14382553--14383023 Score: 480
Period size: 165 Copynumber: 2.8 Consensus size: 166
14382543 CATTATTTAC
* * * * * *
14382553 TTTTCCAAAGTTATTGAGCCTTTGTTTAAATGAGCTTTGTTTATTTTTTTCAAAGTTGTTGAGCC
1 TTTTTCAAAGTTATTGAGCCTCTATTTAGAGGAGC-TT-TAT-TTTTTTTCAAAGTTGTTGAGCC
* ** ** * * * *
14382618 TCTGTTTAGAAAAGCTTTATTTTTTTGAAGTTGTTGAGTCTCTATTTAGAGGAGCTTTATTTATT
63 TCTGTTTGGAGGAGCTTTATTTTTTCAAAGTCGTTGAGCCTTTGTTTAGAGGAGCTTTATTTATT
** *
14382683 TTCCAAAGTCATTAAGCCTTTGTTTAGAGGAAGTTTATT
128 TTCCAAAGTCATTAAGCCTCCGTTTAGAGGAACTTTATT
* * ** *
14382722 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTTTTTTCACAGTCATTAAGCCTCT
1 TTTTTCAAAGTTATTGAGCCTCTATTTAGAGGAGCTTTATTTTTTTTCAAAGTTGTTGAGCCTCT
*
14382787 GTTTGGAGGAGCTTTATTTTTTCAAAGTCATTGAG-CTTTGTTTAGAGGAGCTTTATTCT-TTTT
66 GTTTGGAGGAGCTTTATTTTTTCAAAGTCGTTGAGCCTTTGTTTAGAGGAGCTTTATT-TATTTT
** * * *
14382850 TTAAAGTCGTTAAGCCTCCGTTTCGAGGATCTTTATT
130 CCAAAGTCATTAAGCCTCCGTTTAGAGGAACTTTATT
** * * * * *
14382887 TTTTTTGAAGTTATTTAGCCTCTGTTTAGATGAGCTTTATTTATTTGTCAAAGTTGTTGAGCCTT
1 TTTTTCAAAGTTATTGAGCCTCTATTTAGAGGAGCTTTATTT-TTTTTCAAAGTTGTTGAGCCTC
* * ** *
14382952 TATTTAGG-GGAGCTTTATTTTTTTCAAAGTCGTTGAGCCTTTGTTTAGCGGAGCCATGTTTATT
65 TGTTT-GGAGGAGCTTTA-TTTTTTCAAAGTCGTTGAGCCTTTGTTTAGAGGAGCTTTATTTA-T
14383016 TTTCCAAA
127 TTTCCAAA
14383024 CATTGTGAGC
Statistics
Matches: 247, Mismatches: 48, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
165 89 0.36
166 79 0.32
167 23 0.09
168 20 0.08
169 36 0.15
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (166 bp):
TTTTTCAAAGTTATTGAGCCTCTATTTAGAGGAGCTTTATTTTTTTTCAAAGTTGTTGAGCCTCT
GTTTGGAGGAGCTTTATTTTTTCAAAGTCGTTGAGCCTTTGTTTAGAGGAGCTTTATTTATTTTC
CAAAGTCATTAAGCCTCCGTTTAGAGGAACTTTATT
Found at i:14383269 original size:4 final size:4
Alignment explanation
Indices: 14383253--14383320 Score: 52
Period size: 4 Copynumber: 17.5 Consensus size: 4
14383243 AAATTACCCG
* * * * * *
14383253 TTAT TTCAT TTAT TTA- TTAG TTAT CTAT TTAT CTAT TTGT TTAT CTAC
1 TTAT TT-AT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
14383301 TTAT TTA- TTAT TTA- TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TT
14383321 TTTGGTAGAT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
3 9 0.18
4 36 0.73
5 4 0.08
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.66
Consensus pattern (4 bp):
TTAT
Found at i:14383409 original size:11 final size:11
Alignment explanation
Indices: 14383393--14383417 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14383383 GCTTTTATGT
14383393 TAAGATAATAA
1 TAAGATAATAA
14383404 TAAGATAATAA
1 TAAGATAATAA
14383415 TAA
1 TAA
14383418 TAATAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (11 bp):
TAAGATAATAA
Found at i:14388214 original size:18 final size:17
Alignment explanation
Indices: 14388191--14388229 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
14388181 ACTATATCCA
*
14388191 TTGTTGATCATGTTTGAG
1 TTGTTGAT-ATGGTTGAG
*
14388209 TTGTTGGTATGGTTGAG
1 TTGTTGATATGGTTGAG
14388226 TTGT
1 TTGT
14388230 AGACCATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.13, C:0.03, G:0.33, T:0.51
Consensus pattern (17 bp):
TTGTTGATATGGTTGAG
Found at i:14389186 original size:20 final size:20
Alignment explanation
Indices: 14389145--14389186 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
14389135 ATATCAAAAT
*
14389145 AATCAAAATAATAAAAATCA
1 AATCAAAATAATAAAAAGCA
14389165 AATC-AAATAATAAAAGAGCA
1 AATCAAAATAATAAAA-AGCA
14389185 AA
1 AA
14389187 AAGTTCAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.69, C:0.10, G:0.05, T:0.17
Consensus pattern (20 bp):
AATCAAAATAATAAAAAGCA
Found at i:14402663 original size:22 final size:21
Alignment explanation
Indices: 14402615--14402679 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
14402605 TAAATGCCAT
14402615 AAAA-AATTAAAAATTTTAAA
1 AAAATAATTAAAAATTTTAAA
* *
14402635 TATATAATTATAAAATTTTAAA
1 AAAATAATTA-AAAATTTTAAA
*
14402657 AAAATAA--AAAATATTTTTAA
1 AAAATAATTAAAA-ATTTTAAA
14402677 AAA
1 AAA
14402680 TCCAAAGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
19 3 0.08
20 13 0.35
21 5 0.14
22 16 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAATAATTAAAAATTTTAAA
Found at i:14403677 original size:20 final size:20
Alignment explanation
Indices: 14403652--14403701 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 20
14403642 TTATTATTAA
14403652 AATTATTAATATTTAAAAAT
1 AATTATTAATATTTAAAAAT
*
14403672 AATTA-T-AT-TTTAATAAT
1 AATTATTAATATTTAAAAAT
14403689 AA-TATTTAATATT
1 AATTA-TTAATATT
14403702 AAGATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
16 2 0.08
17 10 0.40
18 3 0.12
19 3 0.12
20 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTATTAATATTTAAAAAT
Found at i:14403815 original size:22 final size:23
Alignment explanation
Indices: 14403785--14403841 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
14403775 ATATATTATT
* *
14403785 TATTAATAATA-CATTATTATAA
1 TATTTATAATATCATTATAATAA
*
14403807 TATTTATAA-ATTATTATAATAA
1 TATTTATAATATCATTATAATAA
14403829 TATTTATTAATAT
1 TATTTA-TAATAT
14403842 GTTATTTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 23 0.79
23 3 0.10
24 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTTATAATATCATTATAATAA
Found at i:14403870 original size:22 final size:22
Alignment explanation
Indices: 14403843--14403890 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
14403833 TATTAATATG
*
14403843 TTATTTGTTAACATAATATTAT
1 TTATTTATTAACATAATATTAT
*
14403865 TTATTTATTAATATAATATTAT
1 TTATTTATTAACATAATATTAT
14403887 TTAT
1 TTAT
14403891 AAGGAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTATTTATTAACATAATATTAT
Found at i:14410309 original size:16 final size:16
Alignment explanation
Indices: 14410288--14410329 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
14410278 CATAAATTTT
14410288 AATAAAAATTATATAA
1 AATAAAAATTATATAA
14410304 AATAAAAATTATATAA
1 AATAAAAATTATATAA
14410320 AATAAAAATT
1 AATAAAAATT
14410330 TTTCATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAAAAATTATATAA
Found at i:14410319 original size:27 final size:28
Alignment explanation
Indices: 14410257--14410321 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
14410247 TTTGATTAAT
* * *
14410257 ATTATTTAAAAATTAAATTAACATAAAT
1 ATTATATAAAAATTAAATTAAAATAAAA
* *
14410285 TTTA-ATAAAAATTATA-TAAAATAAAA
1 ATTATATAAAAATTAAATTAAAATAAAA
14410311 ATTATATAAAA
1 ATTATATAAAA
14410322 TAAAAATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 11 0.37
27 16 0.53
28 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (28 bp):
ATTATATAAAAATTAAATTAAAATAAAA
Found at i:14410490 original size:23 final size:25
Alignment explanation
Indices: 14410460--14410505 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
14410450 ATTTTATTAT
14410460 TTAATTAA-TCAAAA-TAAATTTGA
1 TTAATTAATTCAAAATTAAATTTGA
*
14410483 TTAATTAATTTAAAATTAAATTT
1 TTAATTAATTCAAAATTAAATTT
14410506 TTAATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
TTAATTAATTCAAAATTAAATTTGA
Found at i:14410514 original size:28 final size:30
Alignment explanation
Indices: 14410470--14410551 Score: 84
Period size: 28 Copynumber: 2.9 Consensus size: 30
14410460 TTAATTAATC
*
14410470 AAAATAAATTTGA-TTAATTAATTTAAA-AT
1 AAAAT-AATTTAATTTAATTAATTTAAACAT
* *
14410499 TAAAT-TTTTAATTTAATTAA--TAAACAT
1 AAAATAATTTAATTTAATTAATTTAAACAT
*
14410526 AAAATAATTTAGTTTAATTAATTTAA
1 AAAATAATTTAATTTAATTAATTTAA
14410552 TTTTGAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
26 4 0.10
27 10 0.24
28 21 0.50
29 4 0.10
30 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (30 bp):
AAAATAATTTAATTTAATTAATTTAAACAT
Found at i:14410518 original size:23 final size:21
Alignment explanation
Indices: 14410459--14410518 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 21
14410449 TATTTTATTA
*
14410459 TTTAATTAATCAAAATAAATT
1 TTTAATTAATTAAAATAAATT
14410480 TGATTAATTAATTTAAAATTAAATT
1 T--TTAATTAA-TTAAAA-TAAATT
14410505 TTTAATTTAATTAA
1 TTTAA-TTAATTAA
14410519 TAAACATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 1 0.03
23 16 0.48
24 9 0.27
25 7 0.21
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTAATTAATTAAAATAAATT
Found at i:14411012 original size:29 final size:30
Alignment explanation
Indices: 14410942--14411004 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
14410932 AATCTTTTTT
*
14410942 AAATAAAAATTTATTTAAATATAAATTAAA
1 AAATAAAAAATTATTTAAATATAAATTAAA
*
14410972 AAATAAAAAATTATTTAAGTAT-AA-TAAA
1 AAATAAAAAATTATTTAAATATAAATTAAA
14411000 AAATA
1 AAATA
14411005 TATAAATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 9 0.29
29 2 0.06
30 20 0.65
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
AAATAAAAAATTATTTAAATATAAATTAAA
Found at i:14415386 original size:23 final size:23
Alignment explanation
Indices: 14415353--14415399 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14415343 ATAAATTAAG
*
14415353 CAAGAGCATTACTATTTATGGGC
1 CAAGAGAATTACTATTTATGGGC
* *
14415376 CAAGAGAATTACTTTTTATTGGC
1 CAAGAGAATTACTATTTATGGGC
14415399 C
1 C
14415400 TACAGTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (23 bp):
CAAGAGAATTACTATTTATGGGC
Found at i:14416830 original size:2 final size:2
Alignment explanation
Indices: 14416823--14416847 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14416813 TTTAAATCTT
14416823 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14416848 CATAACACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14418186 original size:23 final size:23
Alignment explanation
Indices: 14418156--14418224 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
14418146 GGAGATGTCG
14418156 TGGATGGGTGATCAGTTGGTGTA
1 TGGATGGGTGATCAGTTGGTGTA
14418179 TGGATGGGTGATCAGTTGGTGTA
1 TGGATGGGTGATCAGTTGGTGTA
14418202 TGGATGGGTGATCAGTTGGTGTA
1 TGGATGGGTGATCAGTTGGTGTA
14418225 AGACAATAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.17, C:0.04, G:0.43, T:0.35
Consensus pattern (23 bp):
TGGATGGGTGATCAGTTGGTGTA
Found at i:14419385 original size:41 final size:41
Alignment explanation
Indices: 14419323--14419416 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
14419313 ATATAAATTT
* *
14419323 TTAGTGGTGTTTTTGAAATAAACGCCGCTAAAA-GAAAAAA
1 TTAGTGGCGTTTTTGAAATAAACGCCGCAAAAAGGAAAAAA
* * *
14419363 GTTAGTGGCGATTTTT-ATATAAACGCCTCAAAAAGGAAGAAA
1 -TTAGTGGCG-TTTTTGAAATAAACGCCGCAAAAAGGAAAAAA
14419405 TTAGTGGCGTTT
1 TTAGTGGCGTTT
14419417 ACTAAATAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
40 3 0.07
41 32 0.70
42 11 0.24
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (41 bp):
TTAGTGGCGTTTTTGAAATAAACGCCGCAAAAAGGAAAAAA
Found at i:14419426 original size:41 final size:41
Alignment explanation
Indices: 14419338--14419426 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
14419328 GGTGTTTTTG
* *
14419338 AAATAAACGCCGCTAAAAGAAAAAAGTTAGTGGCGATTTTT
1 AAATAAACGCCGCAAAAAGAAAAAAGTTAGTGGCGATTTCT
* * *
14419379 ATATAAACGCCTCAAAAAGGAAGAAA-TTAGTGGCG-TTTACT
1 AAATAAACGCCGCAAAAA-GAAAAAAGTTAGTGGCGATTT-CT
14419420 AAATAAA
1 AAATAAA
14419427 TGTCACTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 3 0.08
41 31 0.77
42 6 0.15
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (41 bp):
AAATAAACGCCGCAAAAAGAAAAAAGTTAGTGGCGATTTCT
Found at i:14423203 original size:42 final size:42
Alignment explanation
Indices: 14423157--14423238 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
14423147 GAAACGTCAG
* * **
14423157 TAAATGAGAAAATTTAGCGGTATTTTTGGATACAAATGCCCA
1 TAAATAAGAAAATTTAACGGTATTTTTAAATACAAATGCCCA
** *
14423199 TAAATAAGAAGTTTTAATGGTATTTTTAAATACAAATGCC
1 TAAATAAGAAAATTTAACGGTATTTTTAAATACAAATGCC
14423239 ACTAAATTAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (42 bp):
TAAATAAGAAAATTTAACGGTATTTTTAAATACAAATGCCCA
Found at i:14424827 original size:15 final size:15
Alignment explanation
Indices: 14424788--14424832 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 15
14424778 AAAAAATTAT
*
14424788 AACACATGATTATCC
1 AACACATGATTATAC
14424803 ATTTACACATGATTATAC
1 A---ACACATGATTATAC
14424821 AACACATGATTA
1 AACACATGATTA
14424833 GGCATAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 12 0.46
18 14 0.54
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (15 bp):
AACACATGATTATAC
Found at i:14425297 original size:18 final size:18
Alignment explanation
Indices: 14425254--14425311 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
14425244 CACTTAACTA
14425254 TCAAATATATAAA-T-CT
1 TCAAATATATAAATTACT
*
14425270 TAATAATATATAAATTACT
1 TCA-AATATATAAATTACT
* *
14425289 TCAAATATATATATTATT
1 TCAAATATATAAATTACT
14425307 TCAAA
1 TCAAA
14425312 AAAAATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 2 0.06
17 10 0.29
18 19 0.54
19 4 0.11
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (18 bp):
TCAAATATATAAATTACT
Found at i:14425336 original size:17 final size:18
Alignment explanation
Indices: 14425257--14425340 Score: 66
Period size: 17 Copynumber: 4.6 Consensus size: 18
14425247 TTAACTATCA
14425257 AATATATAAAT-CTTAAT
1 AATATATAAATACTTAAT
*
14425274 AATATATAAATTACTTCA-
1 AATATATAAA-TACTTAAT
* * *
14425292 AATATATATATTATTTCAAAA
1 AATATATA-AATACTT--AAT
*
14425313 AAAATATAAATA-TTAAT
1 AATATATAAATACTTAAT
14425330 AATATATAAAT
1 AATATATAAAT
14425341 TGCTTCAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
17 22 0.42
18 13 0.25
19 7 0.13
20 4 0.08
21 7 0.13
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
AATATATAAATACTTAAT
Found at i:14425819 original size:59 final size:58
Alignment explanation
Indices: 14425637--14425819 Score: 163
Period size: 59 Copynumber: 3.1 Consensus size: 58
14425627 CAACAAAAAA
* *
14425637 ATATAACCAAC--AAATTTCAACAAATATATAACTAAAATCTAAACAAATTTCAACAAAT
1 ATATAACCAACAAAAACTT-AACAAAT-TATAACCAAAATCTAAACAAATTTCAACAAAT
* * * ** * * * *
14425695 ATAAAACCAATAAAAACTTAATAAATTAGTAACCAAAGGCTAAATAAATTTCCATAAGT
1 ATATAACCAACAAAAACTTAACAAATTA-TAACCAAAATCTAAACAAATTTCAACAAAT
* * * * *
14425754 AAATAACTAACAAAAACTTAGCACATTGATAACCAAAATCCAAACAAATTTCAACAAAT
1 ATATAACCAACAAAAACTTAACAAATT-ATAACCAAAATCTAAACAAATTTCAACAAAT
*
14425813 TTATAAC
1 ATATAAC
14425820 AAAAAATTAA
Statistics
Matches: 94, Mismatches: 27, Indels: 7
0.73 0.21 0.05
Matches are distributed among these distances:
58 11 0.12
59 77 0.82
60 6 0.06
ACGTcount: A:0.55, C:0.17, G:0.03, T:0.25
Consensus pattern (58 bp):
ATATAACCAACAAAAACTTAACAAATTATAACCAAAATCTAAACAAATTTCAACAAAT
Found at i:14438784 original size:4 final size:4
Alignment explanation
Indices: 14438777--14438806 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14438767 GTTTTAAGCA
14438777 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
14438807 TGGTGGCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:14439097 original size:19 final size:19
Alignment explanation
Indices: 14439038--14439097 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
14439028 CCCCCATTTG
*
14439038 AAACCCTAAACCA-TGTCC
1 AAACCCTAAACCACTTTCC
14439056 AATACCCTAAACCACCTTT-C
1 AA-ACCCTAAACCA-CTTTCC
14439076 AAACCCTAAACCACTTTCC
1 AAACCCTAAACCACTTTCC
14439095 AAA
1 AAA
14439098 ATCAAACCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
18 6 0.16
19 26 0.70
20 3 0.08
21 2 0.05
ACGTcount: A:0.40, C:0.38, G:0.02, T:0.20
Consensus pattern (19 bp):
AAACCCTAAACCACTTTCC
Found at i:14440065 original size:8 final size:9
Alignment explanation
Indices: 14440054--14440094 Score: 59
Period size: 8 Copynumber: 4.7 Consensus size: 9
14440044 AAAAATTTTG
14440054 AAAAAAT-A
1 AAAAAATGA
14440062 AAAAAATG-
1 AAAAAATGA
14440070 AAAAAATGA
1 AAAAAATGA
14440079 ACAAAAATGA
1 A-AAAAATGA
14440089 AAAAAA
1 AAAAAA
14440095 AAATGTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 15 0.50
9 6 0.20
10 9 0.30
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.10
Consensus pattern (9 bp):
AAAAAATGA
Found at i:14440233 original size:25 final size:25
Alignment explanation
Indices: 14440199--14440253 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
14440189 GTGCGTTTTA
*
14440199 CATTTTATGCATATTTTAATCATGT
1 CATTTTATGCATATTTCAATCATGT
*
14440224 CATTTTATGCATATTTCAATTATGT
1 CATTTTATGCATATTTCAATCATGT
14440249 CATTT
1 CATTT
14440254 ATTATATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (25 bp):
CATTTTATGCATATTTCAATCATGT
Found at i:14444132 original size:19 final size:19
Alignment explanation
Indices: 14444095--14444132 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14444085 CTTCATCCTT
* *
14444095 ACAAAAACAAACTTTAAAA
1 ACAAAAACAAACATCAAAA
14444114 ACAAAAACAAACATCAAAA
1 ACAAAAACAAACATCAAAA
14444133 CATACCTGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.18, G:0.00, T:0.11
Consensus pattern (19 bp):
ACAAAAACAAACATCAAAA
Found at i:14450976 original size:29 final size:32
Alignment explanation
Indices: 14450944--14451003 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
14450934 TTCTTTTTTT
14450944 TTAATT-TTTAATTTT-T-AATTATTATTTAA
1 TTAATTATTTAATTTTATCAATTATTATTTAA
* *
14450973 TTAATTATTTTATTTTATCTATTATTATTTA
1 TTAATTATTTAATTTTATCAATTATTATTTA
14451004 TTTATTACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 6 0.23
30 8 0.31
31 1 0.04
32 11 0.42
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (32 bp):
TTAATTATTTAATTTTATCAATTATTATTTAA
Found at i:14451766 original size:64 final size:65
Alignment explanation
Indices: 14451687--14452050 Score: 278
Period size: 64 Copynumber: 5.6 Consensus size: 65
14451677 AAGTTTTCTT
*
14451687 GATGCCAGCTAAACTGGGCTTAAATTTTCATT-GGTGCTAATTAAATTGGGTATAAACTTTCATT
1 GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGCTAATTAAATTGGGT-TAAACTTTCATT
14451751 -
65 A
* ** * *
14451751 GGTGCCAACTAAACTGGGCTTAAAACTTCATTAAGTG-TCAATTAAATTGGGCTTAAATTTTCAT
1 GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGCT-AATTAAATTGGG-TTAAACTTTCAT
14451815 TA
64 TA
* ** ** * * *
14451817 -AGTGCCAACTAAACTGAGCTTAAATCTTTTCATGGGGTGCTAGCTAAACTGGGCATAAATTTTC
1 GA-TGCCAACTAAACTGGGCTTAAA--TTTTCATTAGGTGCTAATTAAATTGGG-TTAAACTTTC
14451881 ATTA
62 ATTA
* * * * * * * * *
14451885 GATGTC-AGTTAACTAGGCTTAAATTTTCATTGGGTGCTCATTAAGCTAGGCTTAAA-TTTCATT
1 GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGCTAATTAA-ATTGGGTTAAACTTTCATT
14451948 A
65 A
* * * * * * **
14451949 TATGCCAGCT-AATTAGGCTTAAATTTTCATTAGGTGCCAGA-TAATTTTGTTTTAAACTTTCAT
1 GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGCTA-ATTAA-ATTGGGTTAAACTTTCAT
14452012 TA
64 TA
* *
14452014 G-TGCCAACTACACTGGGCTTAAATTTTCATTGGGTGC
1 GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGC
14452051 CAGCTAAATT
Statistics
Matches: 236, Mismatches: 50, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
64 83 0.35
65 80 0.34
66 24 0.10
67 13 0.06
68 34 0.14
69 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (65 bp):
GATGCCAACTAAACTGGGCTTAAATTTTCATTAGGTGCTAATTAAATTGGGTTAAACTTTCATTA
Found at i:14451841 original size:33 final size:33
Alignment explanation
Indices: 14451670--14452249 Score: 322
Period size: 33 Copynumber: 17.7 Consensus size: 33
14451660 CTTAATAACT
* * *
14451670 TGGGCTTAAGTTTTC-TT-GATGCCAGCTAAAC
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * *
14451701 TGGGCTTAAATTTTCATT-GGTGCTAATTAAAT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
*
14451733 TGGG-TATAAACTTTCATT-GGTGCCAACTAAAC
1 TGGGCT-TAAATTTTCATTGGGTGCCAACTAAAC
** ** * * *
14451765 TGGGCTTAAAACTTCATTAAGTGTCAATTAAAT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
**
14451798 TGGGCTTAAATTTTCATTAAGTGCCAACTAAAC
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * * *
14451831 TGAGCTTAAATCTTTTCATGGGGTGCTAGCTAAAC
1 TGGGCTTAAA--TTTTCATTGGGTGCCAACTAAAC
* * * * * *
14451866 TGGGCATAAATTTTCATTAGATGTC-AGTTAAC
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * *
14451898 TAGGCTTAAATTTTCATTGGGTGCTC-ATTAAGC
1 TGGGCTTAAATTTTCATTGGGTGC-CAACTAAAC
* *** * *
14451931 TAGGCTTAAA-TTTCATTATATGCCAGCT-AAT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * **
14451962 TAGGCTTAAATTTTCATTAGGTGCCAGA-TAATT
1 TGGGCTTAAATTTTCATTGGGTGCCA-ACTAAAC
* ** * * *
14451995 TTGTTTTAAACTTTCATT-AGTGCCAACTACAC
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* *
14452027 TGGGCTTAAATTTTCATTGGGTGCCAGCTAAAT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * * *
14452060 TTGGCTTAAATCTTTTTATGGGGTGCCATA-TAATC
1 TGGGCTTAAA--TTTTCATTGGGTGCCA-ACTAAAC
*** * ** * *
14452095 TAAACTTAAACTTTCATTAAGTGCCAGCTACAC
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * * * **
14452128 TTGGATTAAAATTTCATTGGGTGCTAACTTCA-
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
* * * **
14452160 TTGGCTTGAATTTTCATTGTGTGCCAACTAAGT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
*** *
14452193 TGGGCTTAAATTTTCATTGGGTAATAACTAAAT
1 TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
*
14452226 TAGGCTTAAATTTTCATTGGGTGC
1 TGGGCTTAAATTTTCATTGGGTGC
14452250 TAGCTCAACT
Statistics
Matches: 414, Mismatches: 117, Indels: 34
0.73 0.21 0.06
Matches are distributed among these distances:
31 28 0.07
32 145 0.35
33 191 0.46
35 50 0.12
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (33 bp):
TGGGCTTAAATTTTCATTGGGTGCCAACTAAAC
Found at i:14451910 original size:32 final size:32
Alignment explanation
Indices: 14451863--14451981 Score: 134
Period size: 32 Copynumber: 3.7 Consensus size: 32
14451853 GTGCTAGCTA
* *
14451863 AACTGGGCATAAATTTTCATTAGATGTCAGTT
1 AACTAGGCTTAAATTTTCATTAGATGTCAGTT
* *
14451895 AACTAGGCTTAAATTTTCATTGGGTGCTCA-TT
1 AACTAGGCTTAAATTTTCATTAGATG-TCAGTT
* * *
14451927 AAGCTAGGCTTAAA-TTTCATTATATGCCAGCT
1 AA-CTAGGCTTAAATTTTCATTAGATGTCAGTT
*
14451959 AATTAGGCTTAAATTTTCATTAG
1 AACTAGGCTTAAATTTTCATTAG
14451982 GTGCCAGATA
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
31 12 0.17
32 46 0.64
33 14 0.19
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (32 bp):
AACTAGGCTTAAATTTTCATTAGATGTCAGTT
Found at i:14451928 original size:133 final size:129
Alignment explanation
Indices: 14451669--14451978 Score: 290
Period size: 133 Copynumber: 2.4 Consensus size: 129
14451659 ACTTAATAAC
* * * * * * *
14451669 TTGGGCTTAAGTTTTC-TTGATGCCAGCTAAACTGGGCTTAAATTTTCATTGGTGCTAATTAAAT
1 TTGGGCTTAAATTTTCATTAATGCCAACTAAACTGAGCTTAAATTTTCATGGGTGCTAACTAAAC
* * *
14451733 TGGGTATAAACTTTCATTGGTGCCAACTAAACTGGGCTTAAAACTTCATTAAGTGTCAATTAAA
66 TGGGCATAAACTTTCATTGATGCCAACTAAACTAGGCTTAAAACTTCATTAAGTGTCAATTAAA
*
14451797 TTGGGCTTAAATTTTCATTAAGTGCCAACTAAACTGAGCTTAAATCTTTTCATGGGGTGCTAGCT
1 TTGGGCTTAAATTTTCATTAA-TGCCAACTAAACTGAGCTTAAA--TTTTCAT-GGGTGCTAACT
* * * * ** **
14451862 AAACTGGGCATAAATTTTCATTAGATGTC-AGTTAACTAGGCTTAAATTTTCATTGGGTGCTC-A
62 AAACTGGGCATAAACTTTCATT-GATGCCAACTAAACTAGGCTTAAAACTTCATTAAGTG-TCAA
*
14451925 TTAAG
125 TTAAA
* * * *
14451930 CTAGGCTTAAA-TTTCATTATATGCCAGCT-AA-TTAGGCTTAAATTTTCAT
1 TTGGGCTTAAATTTTCATTA-ATGCCAACTAAACTGA-GCTTAAATTTTCAT
14451979 TAGGTGCCAG
Statistics
Matches: 149, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
128 15 0.10
129 10 0.07
130 22 0.15
131 9 0.06
132 22 0.15
133 65 0.44
134 6 0.04
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (129 bp):
TTGGGCTTAAATTTTCATTAATGCCAACTAAACTGAGCTTAAATTTTCATGGGTGCTAACTAAAC
TGGGCATAAACTTTCATTGATGCCAACTAAACTAGGCTTAAAACTTCATTAAGTGTCAATTAAA
Found at i:14452050 original size:65 final size:64
Alignment explanation
Indices: 14451663--14452074 Score: 298
Period size: 65 Copynumber: 6.3 Consensus size: 64
14451653 TTGGGTACTT
* ** * *
14451663 AATAACTTGGGCTTAAGTTTTC-TT-GATGCCAGCTAAACTGGGCTTAAATTTTCATT-GGTGCT
1 AATAAATTGGGCTTAAACTTTCATTAG-TGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGCC
* ** ** *
14451725 AATTAAATTGGG-TATAAACTTTCATTGGTGCCAACTAAACTGGGCTTAAAACTTCATTAAGTGT
1 AA-TAAATTGGGCT-TAAACTTTCATTAGTGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGC
14451789 C
64 C
* * *
14451790 AATTAAATTGGGCTTAAATTTTCATTAAGTGCCAACTAAACTGAGCTTAAATCTTTTCATGGGGT
1 AA-TAAATTGGGCTTAAACTTTCATT-AGTGCCAACTAAACTGGGCTTAAA--TTTTCATTGGGT
*
14451855 GCT
62 GCC
* * * * * * * *
14451858 AGCTAAACTGGGCATAAATTTTCATTAGATGTC-AGTTAACTAGGCTTAAATTTTCATTGGGTGC
1 A-ATAAATTGGGCTTAAACTTTCATTAG-TGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGC
14451922 TC
64 -C
* ** * * * * * *
14451924 ATTAAGCTAGGCTTAAA-TTTCATTATATGCCAGCT-AATTAGGCTTAAATTTTCATTAGGTGCC
1 AATAAATTGGGCTTAAACTTTCATTA-GTGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGCC
* * ** *
14451987 AGATAATTTTGTTTTAAACTTTCATTAGTGCCAACTACACTGGGCTTAAATTTTCATTGGGTGCC
1 A-ATAAATTGGGCTTAAACTTTCATTAGTGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGCC
* *
14452052 AGCTAAATTTGGCTTAAATCTTT
1 A-ATAAATTGGGCTTAAA-CTTT
14452075 TTATGGGGTG
Statistics
Matches: 277, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
62 3 0.01
63 17 0.06
64 82 0.30
65 99 0.36
66 28 0.10
67 15 0.05
68 33 0.12
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (64 bp):
AATAAATTGGGCTTAAACTTTCATTAGTGCCAACTAAACTGGGCTTAAATTTTCATTGGGTGCC
Found at i:14452536 original size:22 final size:22
Alignment explanation
Indices: 14452511--14452552 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14452501 CCAATTACTC
*
14452511 TGGGCTTACGTGCCAACTAATT
1 TGGGCTTACGTACCAACTAATT
*
14452533 TGGGCTTACGTACCAGCTAA
1 TGGGCTTACGTACCAACTAA
14452553 ACTAAGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (22 bp):
TGGGCTTACGTACCAACTAATT
Found at i:14453610 original size:16 final size:18
Alignment explanation
Indices: 14453578--14453620 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 18
14453568 TTCTTTATTC
14453578 CTTTTTCTTTATTTCTTT
1 CTTTTTCTTTATTTCTTT
14453596 CTTTTT-TTT-TTTCTTT
1 CTTTTTCTTTATTTCTTT
14453612 CATTTTTCT
1 C-TTTTTCT
14453621 CTCTTTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 8 0.35
18 7 0.30
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (18 bp):
CTTTTTCTTTATTTCTTT
Found at i:14454874 original size:12 final size:11
Alignment explanation
Indices: 14454854--14454897 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
14454844 AGACTCAAAA
*
14454854 CTTTCTTTTATT
1 CTTT-TTTTTTT
14454866 CTTTTTTTTTT
1 CTTTTTTTTTT
*
14454877 ACTTTTTTTTCT
1 -CTTTTTTTTTT
14454889 CTTTTTTTT
1 CTTTTTTTT
14454898 GAGGTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 15 0.52
12 14 0.48
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:14458444 original size:18 final size:18
Alignment explanation
Indices: 14458405--14458446 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14458395 CCTAAATCTG
* *
14458405 TTTTTTTTTTTTTTAGGT
1 TTTTTTTTTTATTTAGGC
14458423 TTTTTTTTTTATTT-GGAC
1 TTTTTTTTTTATTTAGG-C
14458441 TTTTTT
1 TTTTTT
14458447 CTAACTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.07, C:0.02, G:0.10, T:0.81
Consensus pattern (18 bp):
TTTTTTTTTTATTTAGGC
Found at i:14461757 original size:28 final size:29
Alignment explanation
Indices: 14461696--14461762 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 29
14461686 TGAGTTTTTT
**
14461696 GCTTTTTTTTT-TTTTTTTGGTTCCACAA
1 GCTTTTTTTTTGTTTTTTTGCATCCACAA
* *
14461724 -CATTTTTTTTGTTTTTTTGCATGCA-AA
1 GCTTTTTTTTTGTTTTTTTGCATCCACAA
*
14461751 GCTTTTTGTTTG
1 GCTTTTTTTTTG
14461763 CATTTTCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.12, C:0.12, G:0.13, T:0.63
Consensus pattern (29 bp):
GCTTTTTTTTTGTTTTTTTGCATCCACAA
Found at i:14462757 original size:9 final size:8
Alignment explanation
Indices: 14462732--14462773 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
14462722 TTTGGCAAAG
14462732 ATTTTTTT
1 ATTTTTTT
14462740 A-TTTTTT
1 ATTTTTTT
14462747 ATTTTTCTT
1 ATTTTT-TT
14462756 ATTATTTTT
1 ATT-TTTTT
*
14462765 ATTTATTT
1 ATTTTTTT
14462773 A
1 A
14462774 AATATTATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
7 7 0.23
8 10 0.33
9 10 0.33
10 3 0.10
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (8 bp):
ATTTTTTT
Found at i:14462809 original size:22 final size:21
Alignment explanation
Indices: 14462784--14462824 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14462774 AATATTATTC
14462784 TATATATTTATATTATTTATAT
1 TATATATTTATATT-TTTATAT
*
14462806 TATATATTTTTATTTTTAT
1 TATATATTTATATTTTTAT
14462825 TATTTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TATATATTTATATTTTTATAT
Found at i:14462827 original size:24 final size:23
Alignment explanation
Indices: 14462775--14462828 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
14462765 ATTTATTTAA
14462775 ATATTATTCTATATATTTATATT
1 ATATTATTCTATATATTTATATT
*
14462798 AT-TTATAT-TATATATTTTTATTT
1 ATATTAT-TCTATATATTTATA-TT
*
14462821 TTATTATT
1 ATATTATT
14462829 TTTTAATGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 15 0.58
23 7 0.27
24 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATTATTCTATATATTTATATT
Found at i:14462830 original size:9 final size:9
Alignment explanation
Indices: 14462732--14462831 Score: 64
Period size: 9 Copynumber: 10.7 Consensus size: 9
14462722 TTTGGCAAAG
14462732 ATTTTT-TT
1 ATTTTTATT
14462740 ATTTTTTATT
1 A-TTTTTATT
14462750 -TTTCTTATT
1 ATTT-TTATT
14462759 ATTTTTATTT
1 ATTTTTA-TT
*
14462769 ATTTAAATATT
1 ATTT--TTATT
*
14462780 A-TTCTATAT
1 ATTTTTAT-T
*
14462789 ATTTATATT
1 ATTTTTATT
*
14462798 ATTTATATT
1 ATTTTTATT
14462807 ATATATTT-TT
1 AT-T-TTTATT
14462817 ATTTTTATT
1 ATTTTTATT
14462826 ATTTTT
1 ATTTTT
14462832 TAATGGCCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 23
0.74 0.04 0.22
Matches are distributed among these distances:
8 10 0.13
9 36 0.47
10 23 0.30
11 5 0.07
12 2 0.03
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (9 bp):
ATTTTTATT
Found at i:14463473 original size:12 final size:12
Alignment explanation
Indices: 14463441--14463477 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
14463431 TACACAATAA
14463441 ATGCAAATATGT
1 ATGCAAATATGT
14463453 ATG-AAATATGT
1 ATGCAAATATGT
14463464 ATGCAAATATGT
1 ATGCAAATATGT
14463476 AT
1 AT
14463478 CATAAGTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (12 bp):
ATGCAAATATGT
Found at i:14465968 original size:24 final size:25
Alignment explanation
Indices: 14465934--14465996 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
14465924 GAAAGAGCCG
14465934 AAGTTTCGAGATGTG-AAAGAGCTAA
1 AAGTTT-GAGATGTGAAAAGAGCTAA
*
14465959 AAGTTTGAGATATGAAAAGAGCTAA
1 AAGTTTGAGATGTGAAAAGAGCTAA
* *
14465984 AGGTTTAAGATGT
1 AAGTTTGAGATGT
14465997 AAGAAGTGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (25 bp):
AAGTTTGAGATGTGAAAAGAGCTAA
Found at i:14466278 original size:22 final size:22
Alignment explanation
Indices: 14466246--14466287 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
14466236 TCTCAGAAGA
*
14466246 GATTTGTTTGAGATTTGTCAAG
1 GATTTGCTTGAGATTTGTCAAG
14466268 GATTTGCTTGAGATTTGTCA
1 GATTTGCTTGAGATTTGTCA
14466288 GATATTGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.45
Consensus pattern (22 bp):
GATTTGCTTGAGATTTGTCAAG
Found at i:14467101 original size:25 final size:26
Alignment explanation
Indices: 14467068--14467116 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
14467058 TTCGAGACAT
14467068 GAAAGAGCTAAAAGTTCAAGATGTAA
1 GAAAGAGCTAAAAGTTCAAGATGTAA
* * *
14467094 GAAA-AGCTTAAGGTTTAAGATGT
1 GAAAGAGCTAAAAGTTCAAGATGT
14467117 GGAAAGTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (26 bp):
GAAAGAGCTAAAAGTTCAAGATGTAA
Found at i:14467497 original size:52 final size:52
Alignment explanation
Indices: 14467440--14467563 Score: 167
Period size: 52 Copynumber: 2.4 Consensus size: 52
14467430 GAAAAAGAGG
* * *
14467440 ATTCTTAATAGGTAAGTTTGACTTGCAATAGAAGAATTTTAAAAGGAAAAGA
1 ATTCTTAATAGGCAAGTTTGACTTGCAAGAGAAGAATTCTAAAAGGAAAAGA
* * * * *
14467492 ATTCTTAATAGGCAAGTTTGACTTTCAAGAGAATAATTCTAAGAGGAAAGGG
1 ATTCTTAATAGGCAAGTTTGACTTGCAAGAGAAGAATTCTAAAAGGAAAAGA
*
14467544 ATTCTTAATGGGCAAGTTTG
1 ATTCTTAATAGGCAAGTTTG
14467564 TACGGTTATA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (52 bp):
ATTCTTAATAGGCAAGTTTGACTTGCAAGAGAAGAATTCTAAAAGGAAAAGA
Found at i:14468244 original size:17 final size:17
Alignment explanation
Indices: 14468222--14468255 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14468212 GTCTTCTATT
14468222 TTTTTTCTGTTG-GTTTC
1 TTTTTTCT-TTGTGTTTC
14468239 TTTTTTCTTTGTGTTTC
1 TTTTTTCTTTGTGTTTC
14468256 ATGAGTGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.74
Consensus pattern (17 bp):
TTTTTTCTTTGTGTTTC
Found at i:14468763 original size:8 final size:8
Alignment explanation
Indices: 14468740--14468774 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
14468730 TTTTTAGGCA
*
14468740 ATACATAC
1 ATACATAT
14468748 ATACATAT
1 ATACATAT
14468756 ATACATAT
1 ATACATAT
*
14468764 ATATATAT
1 ATACATAT
14468772 ATA
1 ATA
14468775 TTCTTTTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (8 bp):
ATACATAT
Found at i:14470872 original size:37 final size:37
Alignment explanation
Indices: 14470823--14470935 Score: 163
Period size: 37 Copynumber: 3.0 Consensus size: 37
14470813 ATGCATCATG
14470823 ATAGATAATACATGCATTCTATTTCATGCACATCTTA
1 ATAGATAATACATGCATTCTATTTCATGCACATCTTA
* *
14470860 ATAGATAGTACATGCATTCTATTTCATGAACATCTTA
1 ATAGATAATACATGCATTCTATTTCATGCACATCTTA
* * * *
14470897 ATAGATAATACATGCACTCCATCTCATTGCATATCTTA
1 ATAGATAATACATGCATTCTATTTCA-TGCACATCTTA
14470935 A
1 A
14470936 AGTAGTGTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
37 57 0.85
38 10 0.15
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.36
Consensus pattern (37 bp):
ATAGATAATACATGCATTCTATTTCATGCACATCTTA
Found at i:14480760 original size:14 final size:14
Alignment explanation
Indices: 14480738--14480770 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14480728 GGGTGCATGC
14480738 AAAAAAAATGAAAT
1 AAAAAAAATGAAAT
*
14480752 AAAACAAATGAAAT
1 AAAAAAAATGAAAT
14480766 AAAAA
1 AAAAA
14480771 GAAAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (14 bp):
AAAAAAAATGAAAT
Found at i:14481254 original size:5 final size:6
Alignment explanation
Indices: 14481239--14481264 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14481229 AATGAAGGAA
14481239 AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AA
14481265 GGGAAGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:14483377 original size:35 final size:35
Alignment explanation
Indices: 14483292--14483396 Score: 124
Period size: 35 Copynumber: 3.0 Consensus size: 35
14483282 AAAAAAAATA
* *
14483292 TTCTCAGTGGCA-AAATTTGACCTTTACTCAAAACT
1 TTCTCAGTGG-AGAAATTTGACCTTTTCTTAAAACT
*
14483327 TTCT-TGATGGAGAAATTTGACCTTTTCTTAAAACT
1 TTCTCAG-TGGAGAAATTTGACCTTTTCTTAAAACT
* * *
14483362 TTCTCAGTGGTGAAATCTGACATTTTCTTAAAACT
1 TTCTCAGTGGAGAAATTTGACCTTTTCTTAAAACT
14483397 CCCTTAGCGG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
34 2 0.03
35 57 0.95
36 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (35 bp):
TTCTCAGTGGAGAAATTTGACCTTTTCTTAAAACT
Found at i:14483409 original size:35 final size:35
Alignment explanation
Indices: 14483338--14483409 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
14483328 TCTTGATGGA
* * ** *
14483338 GAAATTTGACCTTTTCTTAAAACTTTCTCAGTGGT
1 GAAATCTGACATTTTCTTAAAACTCCCTCAGCGGT
*
14483373 GAAATCTGACATTTTCTTAAAACTCCCTTAGCGGT
1 GAAATCTGACATTTTCTTAAAACTCCCTCAGCGGT
14483408 GA
1 GA
14483410 TATTCAAGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (35 bp):
GAAATCTGACATTTTCTTAAAACTCCCTCAGCGGT
Found at i:14483644 original size:34 final size:33
Alignment explanation
Indices: 14483606--14483676 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 33
14483596 TTCTTTTGTA
* *
14483606 GTGATTTTCAA-AGTTGTTTGAGTTTTCTTCAGTG
1 GTGATTATCAAGAGTTGTTT--GCTTTCTTCAGTG
14483640 GTGA-TATCAAGAGTTGTTTGCTTTCTTCAGTG
1 GTGATTATCAAGAGTTGTTTGCTTTCTTCAGTG
14483672 GTGAT
1 GTGAT
14483677 ATCCGAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
32 16 0.48
33 5 0.15
34 12 0.36
ACGTcount: A:0.18, C:0.10, G:0.25, T:0.46
Consensus pattern (33 bp):
GTGATTATCAAGAGTTGTTTGCTTTCTTCAGTG
Found at i:14483810 original size:57 final size:54
Alignment explanation
Indices: 14483687--14483827 Score: 140
Period size: 57 Copynumber: 2.5 Consensus size: 54
14483677 ATCCGAAATC
* * *
14483687 ATTTGAATTCTCTTTTATAGTGATATCCAAAGTCATTTTTTCACTCAATGGTGAT
1 ATTTGAATTC-CCTTTATAGTGATATCCAAAATCATTTTTTCACTCAATGGTAAT
* * * * * *
14483742 ATTCGAGTTCCCTTTAGTAGTGATATCCAAAATCCTTTGTTTTTACTCAGTTGTAAT
1 ATTTGAATTCCCTTTA-TAGTGATATCCAAAAT-CATT-TTTTCACTCAATGGTAAT
*
14483799 ATTTGAATTCCCTTCA-ATGTGATATCCAA
1 ATTTGAATTCCCTTTATA-GTGATATCCAA
14483828 GTTCCTTTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
54 5 0.07
55 24 0.34
56 14 0.20
57 27 0.39
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (54 bp):
ATTTGAATTCCCTTTATAGTGATATCCAAAATCATTTTTTCACTCAATGGTAAT
Found at i:14495075 original size:19 final size:21
Alignment explanation
Indices: 14495031--14495077 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
14495021 CAAATGCCCT
14495031 AAAGTCAACTTTGATCAAATC
1 AAAGTCAACTTTGATCAAATC
*
14495052 -TAGTCAAC-TTGATCAAA-C
1 AAAGTCAACTTTGATCAAATC
14495070 AAAGTCAA
1 AAAGTCAA
14495078 AGTTAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 7 0.30
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (21 bp):
AAAGTCAACTTTGATCAAATC
Found at i:14495852 original size:7 final size:7
Alignment explanation
Indices: 14495837--14495904 Score: 55
Period size: 7 Copynumber: 9.6 Consensus size: 7
14495827 CCTAAATTTG
14495837 AAACCCT
1 AAACCCT
*
14495844 AAACTCT
1 AAACCCT
*
14495851 AAACCAT
1 AAACCCT
*
14495858 AAATCCT
1 AAACCCT
* *
14495865 AAGCACT
1 AAACCCT
*
14495872 AAACCTT
1 AAACCCT
14495879 AAACCCT
1 AAACCCT
* *
14495886 AAATCTT
1 AAACCCT
14495893 AAAACCCT
1 -AAACCCT
14495901 AAAC
1 AAAC
14495905 AACCTCTCAG
Statistics
Matches: 44, Mismatches: 16, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
7 39 0.89
8 5 0.11
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.21
Consensus pattern (7 bp):
AAACCCT
Found at i:14495854 original size:14 final size:13
Alignment explanation
Indices: 14495823--14495903 Score: 63
Period size: 14 Copynumber: 5.8 Consensus size: 13
14495813 TAATTCCATG
*
14495823 AAACCCTAAATTT
1 AAACCCTAAATCT
14495836 GAAACCCTAAACTCT
1 -AAACCCTAAA-TCT
*
14495851 AAACCATAAATCCT
1 AAACCCTAAAT-CT
* * *
14495865 AAGCACTAAACCTT
1 AAACCCTAAATC-T
14495879 AAACCCTAAATCTT
1 AAACCCTAAATC-T
14495893 AAAACCCTAAA
1 -AAACCCTAAA
14495904 CAACCTCTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
13 2 0.04
14 40 0.74
15 12 0.22
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.22
Consensus pattern (13 bp):
AAACCCTAAATCT
Found at i:14495865 original size:21 final size:21
Alignment explanation
Indices: 14495837--14495888 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
14495827 CCTAAATTTG
*
14495837 AAACCCTAAACTCTAAACCAT
1 AAACCCTAAACACTAAACCAT
* * *
14495858 AAATCCTAAGCACTAAACCTT
1 AAACCCTAAACACTAAACCAT
14495879 AAACCCTAAA
1 AAACCCTAAA
14495889 TCTTAAAACC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.19
Consensus pattern (21 bp):
AAACCCTAAACACTAAACCAT
Found at i:14498124 original size:15 final size:15
Alignment explanation
Indices: 14498106--14498154 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
14498096 GCTGGTCACA
14498106 GAACAATTATTCAAG
1 GAACAATTATTCAAG
* * *
14498121 GAACTATTCTTTCATG
1 GAACAATT-ATTCAAG
14498137 GAACAATTATTCAAG
1 GAACAATTATTCAAG
14498152 GAA
1 GAA
14498155 TAACTCATTC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (15 bp):
GAACAATTATTCAAG
Found at i:14498166 original size:31 final size:31
Alignment explanation
Indices: 14498105--14498173 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
14498095 AGCTGGTCAC
* *
14498105 AGAACAATTATTCAAGGAACTATTCTTTCAT
1 AGAACAATTATTCAAGGAACTACTCATTCAT
*
14498136 GGAACAATTATTCAAGGAA-TAACTCATTCAT
1 AGAACAATTATTCAAGGAACT-ACTCATTCAT
14498167 AGAACAA
1 AGAACAA
14498174 CACCTTCCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (31 bp):
AGAACAATTATTCAAGGAACTACTCATTCAT
Found at i:14502176 original size:36 final size:36
Alignment explanation
Indices: 14502132--14502609 Score: 269
Period size: 36 Copynumber: 13.2 Consensus size: 36
14502122 TTCTCCAAGT
* *
14502132 AAACATTCTCATTACTTATTCTTCTATTTTTAAGGG
1 AAACACTCTCATTACTTGTTCTTCTATTTTTAAGGG
* * * * * *
14502168 AAATATTCTTATTAATTGTTCTTCTATGTTTAAAGG
1 AAACACTCTCATTACTTGTTCTTCTATTTTTAAGGG
*
14502204 AAACA-TCTTCATTACTTATT-TTACTATTTTTCAA-GG
1 AAACACTC-TCATTACTTGTTCTT-CTATTTTT-AAGGG
* * * * *
14502240 AAAAACTTTCATTACTTATTATCCTATTTTCTTAAGGG
1 AAACACTCTCATTACTTGTTCTTCTA-TTT-TTAAGGG
* * * *
14502278 AAATAC-C-CATTACATGTTCTCCTAATTTTT-AGGT
1 AAACACTCTCATTACTTGTTCTTCT-ATTTTTAAGGG
* * * * *
14502312 AAATACTCTCATTATTTATTC-TCTAATTTTTTAGGA
1 AAACACTCTCATTACTTGTTCTTCT-ATTTTTAAGGG
* * * *
14502348 AAACACTCTTATTACTTGTTCTCCTATTTTTTAGAG
1 AAACACTCTCATTACTTGTTCTTCTATTTTTAAGGG
* *
14502384 AAACACTCGCATTACTTATTC-TCTTATTTTTAAGGG
1 AAACACTCTCATTACTTGTTCTTC-TATTTTTAAGGG
* * ** *
14502420 AAACACTCTCATTAATTGTTCTCCTATTTTTTTGAG
1 AAACACTCTCATTACTTGTTCTTCTATTTTTAAGGG
* * * * *
14502456 AAATA-TTTATATTACTTGTTC-TCTTATTTTTTAGAG
1 AAACACTCT-CATTACTTGTTCTTC-TATTTTTAAGGG
* * * **
14502492 AAACACTATCGTTACTTGTTCTTCTATTTTTTTAGTA
1 AAACACTCTCATTACTTGTTCTTCTA-TTTTTAAGGG
*
14502529 AAACACTCGCATTACTTGTTC-TCTTATTTTTCTTAAGGG
1 AAACACTCTCATTACTTGTTCTTC-TA--TTT-TTAAGGG
* * * * * *
14502568 AAACACTTTTATTA-TTAATTTTTTTATTTTTTAGGG
1 AAACACTCTCATTACTT-GTTCTTCTATTTTTAAGGG
14502604 AAACAC
1 AAACAC
14502610 CCATTTACCT
Statistics
Matches: 347, Mismatches: 70, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
34 9 0.03
35 20 0.06
36 235 0.68
37 48 0.14
38 15 0.04
39 19 0.05
40 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (36 bp):
AAACACTCTCATTACTTGTTCTTCTATTTTTAAGGG
Found at i:14506641 original size:145 final size:142
Alignment explanation
Indices: 14506284--14506689 Score: 437
Period size: 143 Copynumber: 2.8 Consensus size: 142
14506274 CATTTTTTGG
14506284 TTTTAAA-GCACCAAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTTCATAAAAATTC
1 TTTTAAATGCA-CAAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTTCATAAAAATTC
** * * *
14506348 AAGCTCAAAAAAGATAAATTACGAAAATACCCTATAGGGGTGTTTTAGTAATTTCACACTTTACG
65 AAGCTTGAGAAGGATAAATTACGAAAATACCCTATAGGGGTATTTTAGTAATTTCACACTTTACG
* *
14506413 GGTATTGCTATGA
130 GGTACTACTATGA
* * * * * *
14506426 TTTCAAATTCACAAAAAATTATAAAATATTATGAAATTAAGATCTGAAAAGTTTCACAAAAATTT
1 TTTTAAATGCAC-AAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTTCATAAAAATTC
* * *
14506491 GAGCTTGGGAAGGATAAATTATGAAAATACCCATATCA-GGGTATTTT-GATAATTTCACACTTT
65 AAGCTTGAGAAGGATAAATTACGAAAATACCC-TAT-AGGGGTATTTTAG-TAATTTCACACTTT
** *
14506554 TTGGGATACTATTATGA
127 ACGGG-TACTACTATGA
* * *
14506571 TTTTAAATGCATCAAAAATCATAAAATATTATAAAATTGAGATCT-AAAAATTTGCATGAAAATT
1 TTTTAAATGCA-CAAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTT-CATAAAAATT
* * * **
14506635 CAAGCTTGAGAA-GACCAAATTACAAAAAAACCC-ATAAAAGGTATTTTAGTAATTT
64 CAAGCTTGAGAAGGA-TAAATTACGAAAATACCCTAT-AGGGGTATTTTAGTAATTT
14506690 TATACTTCCC
Statistics
Matches: 217, Mismatches: 36, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
142 7 0.03
143 79 0.36
144 51 0.24
145 79 0.36
146 1 0.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.32
Consensus pattern (142 bp):
TTTTAAATGCACAAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTTCATAAAAATTCA
AGCTTGAGAAGGATAAATTACGAAAATACCCTATAGGGGTATTTTAGTAATTTCACACTTTACGG
GTACTACTATGA
Found at i:14507453 original size:50 final size:49
Alignment explanation
Indices: 14507368--14507531 Score: 195
Period size: 50 Copynumber: 3.3 Consensus size: 49
14507358 AGCATAGAAG
* *
14507368 CTTTAAAAGTTCTTGTTTGAAAATGACTTCCCCTAAACAGAGGCTTTGAAA
1 CTTTAAAA-ATCTTGTTTGAAAATGGC-TCCCCTAAACAGAGGCTTTGAAA
* *
14507419 CTTTAAAAATCTTGTTTGAAAATGGCTCCTCCTAAATAGAGG-TTTTAACA
1 CTTTAAAAATCTTGTTTGAAAATGGCTCC-CCTAAACAGAGGCTTTGAA-A
* * * * *
14507469 GTTTATAAATCTTGTTTAAAAATGGCTCCCCCTAAACAAAGGCTTTGTAA
1 CTTTAAAAATCTTGTTTGAAAATGGCT-CCCCTAAACAGAGGCTTTGAAA
14507519 CTTTAAAAATCTT
1 CTTTAAAAATCTT
14507532 ATTTTTCTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
49 8 0.08
50 74 0.77
51 14 0.15
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35
Consensus pattern (49 bp):
CTTTAAAAATCTTGTTTGAAAATGGCTCCCCTAAACAGAGGCTTTGAAA
Found at i:14507549 original size:2 final size:2
Alignment explanation
Indices: 14507542--14507592 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
14507532 ATTTTTCTTT
*
14507542 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14507584 TC TC TC TC T
1 TC TC TC TC T
14507593 TTTAATTTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:14516349 original size:17 final size:17
Alignment explanation
Indices: 14516327--14516368 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
14516317 TATGTATTAT
14516327 TGCCTTCCCGAGCTCTC
1 TGCCTTCCCGAGCTCTC
**
14516344 TGCCTTTTCGAGCTCTC
1 TGCCTTCCCGAGCTCTC
14516361 TGCCTTCC
1 TGCCTTCC
14516369 ACTTTATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.05, C:0.43, G:0.17, T:0.36
Consensus pattern (17 bp):
TGCCTTCCCGAGCTCTC
Found at i:14519095 original size:3 final size:3
Alignment explanation
Indices: 14519089--14519133 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
14519079 ATTACCGATG
*
14519089 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14519134 GAAAGAAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14519100 original size:21 final size:21
Alignment explanation
Indices: 14519074--14519124 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14519064 TGTTTCCCTT
14519074 TTATTATTACCGA-TGTTATTA
1 TTATTATTA-CGATTGTTATTA
**
14519095 TTATTATTATTATTGTTATTA
1 TTATTATTACGATTGTTATTA
14519116 TTATTATTA
1 TTATTATTA
14519125 TTATTATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (21 bp):
TTATTATTACGATTGTTATTA
Found at i:14522981 original size:145 final size:143
Alignment explanation
Indices: 14522807--14523206 Score: 509
Period size: 145 Copynumber: 2.8 Consensus size: 143
14522797 GGATTTTAAA
14522807 GCACAAAAAATCATGAAATATTATAAAATTAAGATCTGAAAATTTTCATAAAAATCTGAGCTCTA
1 GCACAAAAAATCATGAAATATTATAAAATTAAGATCTGAAAATTTTCATAAAAATCTGAGCTC-A
* * * * *
14522872 AAAAGATAAATTATGAAAATACCCTTATAGGGGTATTTTCA-TAATTTCACACTTTTCGAGGCCT
65 AAAGGATAAATTATGAAAATACCCTTATAGGAGTATTTT-AGTAATTTCACACTTCTAG-GGCAT
* * *
14522936 TGCTATGATTTCACAT
128 TGCTATAATTACAAAT
* * * *
14522952 GCATAAAAAATCATGAAATATTACAAAATTAAGATCTGAAAAGTTTT-ATGAAAATCTAAGCTCG
1 GCACAAAAAATCATGAAATATTATAAAATTAAGATCTGAAAA-TTTTCATAAAAATCTGAGCTC-
** *
14523016 AAAAGGATAAATTATGAAAATACTTTTATAGGAGTATTTTAGTAATTTCACACTTCTAGGGTATT
64 AAAAGGATAAATTATGAAAATACCCTTATAGGAGTATTTTAGTAATTTCACACTTCTAGGGCATT
14523081 GCTATAATTACAAAT
129 GCTATAATTACAAAT
* * * * *
14523096 GCACCAAAAATCATGAAATATTATAAAATTGATATCTGAAAATTTTCACAAAAATTTGAGCTCAG
1 GCACAAAAAATCATGAAATATTATAAAATTAAGATCTGAAAATTTTCATAAAAATCTGAGCTCA-
* * * *
14523161 AAAGGTTAAATTATGAAAATACCCCTA-AAGTGTATTTTAGTAATTT
65 AAAGGATAAATTATGAAAATACCCTTATAGGAGTATTTTAGTAATTT
14523207 TGTACTTTCT
Statistics
Matches: 220, Mismatches: 31, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
143 22 0.10
144 89 0.40
145 105 0.48
146 4 0.02
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (143 bp):
GCACAAAAAATCATGAAATATTATAAAATTAAGATCTGAAAATTTTCATAAAAATCTGAGCTCAA
AAGGATAAATTATGAAAATACCCTTATAGGAGTATTTTAGTAATTTCACACTTCTAGGGCATTGC
TATAATTACAAAT
Found at i:14524449 original size:31 final size:31
Alignment explanation
Indices: 14524391--14524449 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14524381 ATGAAGGTTA
*
14524391 TTTTATAAAACAGTTATTCAAGGAACAACTC
1 TTTTATAAAACAGTTATTCAAGAAACAACTC
*
14524422 TTTTATAAAACAGTTGTTCATA-AAACAA
1 TTTTATAAAACAGTTATTCA-AGAAACAA
14524450 GTATTCAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (31 bp):
TTTTATAAAACAGTTATTCAAGAAACAACTC
Found at i:14527457 original size:59 final size:58
Alignment explanation
Indices: 14527391--14527594 Score: 180
Period size: 59 Copynumber: 3.4 Consensus size: 58
14527381 TTTTTTTTTT
* * * * *
14527391 AATTCTTTGCAAAACTTCTAATCTTCCAA-AGTTTTGGTAAGGTTTTTTATTTTTTTCAA
1 AATTCTTT-CAAAACTTCAAACCTTCCAATA-TATTGGTAAGGTTTATTATTTTTTACAA
* * *
14527450 AATTCTTTTATAAATTTCAAACCTTCCAATATGTTGGTAAAGGTTTATTA-TTTTTACAA
1 AATTCTTTCA-AAACTTCAAACCTTCCAATATATTGGT-AAGGTTTATTATTTTTTACAA
* * * *
14527509 ATTTTTTTTTCAAAACTTCAAACCTTCTAATATATTGGTAAGGTTTCTTA-TTTTTACATA
1 A--ATTCTTTCAAAACTTCAAACCTTCCAATATATTGGTAAGGTTTATTATTTTTTACA-A
* * *
14527569 ACATTGTTTCTAAATTTCAAACCTTC
1 A-ATTCTTTCAAAACTTCAAACCTTC
14527595 TAATTTTTAT
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
58 1 0.01
59 76 0.63
60 37 0.31
61 6 0.05
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (58 bp):
AATTCTTTCAAAACTTCAAACCTTCCAATATATTGGTAAGGTTTATTATTTTTTACAA
Found at i:14527595 original size:59 final size:57
Alignment explanation
Indices: 14527424--14527598 Score: 197
Period size: 59 Copynumber: 2.9 Consensus size: 57
14527414 TTCCAAAGTT
* * * * *
14527424 TTGGTAAGGTTTTTTATTTTTTTCAAAATTCTTTTATAAATTTCAAACCTTCCAATATG
1 TTGGTAAGGTTTATTA-TTTTTACAAAATT-TTTTCTAAATTTCAAACCTTCTAATATA
* * *
14527483 TTGGTAAAGGTTTATTATTTTTACAAATTTTTTTTTCAAAACTTCAAACCTTCTAATATA
1 TTGGT-AAGGTTTATTATTTTTACAAA--ATTTTTTCTAAATTTCAAACCTTCTAATATA
* *
14527543 TTGGTAAGGTTTCTTATTTTTACATAACATTGTTTCTAAATTTCAAACCTTCTAAT
1 TTGGTAAGGTTTATTATTTTTACA-AA-ATTTTTTCTAAATTTCAAACCTTCTAAT
14527599 TTTTATATTT
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
59 56 0.57
60 40 0.41
61 2 0.02
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (57 bp):
TTGGTAAGGTTTATTATTTTTACAAAATTTTTTCTAAATTTCAAACCTTCTAATATA
Found at i:14528853 original size:33 final size:33
Alignment explanation
Indices: 14528803--14528919 Score: 128
Period size: 33 Copynumber: 3.5 Consensus size: 33
14528793 GCTAAAGTTT
* *
14528803 AAAACAAAATGACTTGAATT-AAGCTAAAGTCAA
1 AAAATAAAATGACTTGAATTCAA-CTGAAGTCAA
* * *
14528836 AAAATAAAATGATTTGAATTCAATTGAAGTCTA
1 AAAATAAAATGACTTGAATTCAACTGAAGTCAA
* * *
14528869 AAAATGAGATGACTTGAATTGAACTGAAGTCTAA
1 AAAATAAAATGACTTGAATTCAACTGAAGTC-AA
14528903 AAATATAAAATGACTTG
1 AAA-ATAAAATGACTTG
14528920 GACTGAGCCA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
33 51 0.75
34 6 0.09
35 11 0.16
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.27
Consensus pattern (33 bp):
AAAATAAAATGACTTGAATTCAACTGAAGTCAA
Found at i:14528967 original size:68 final size:67
Alignment explanation
Indices: 14528890--14529061 Score: 172
Period size: 68 Copynumber: 2.5 Consensus size: 67
14528880 ACTTGAATTG
*
14528890 AACTGAAGTCTAAAAATATAAAATGACTTGGACTGAG-C-CA-AAATCAAAAAATGATATAACTT
1 AACTAAAGTC-AAAAA-ATAAAATGACTTGGACTGAGTCTCAGAAA--AAAAAATGATATAACTT
14528952 AGACTA
62 AGACTA
* * *
14528958 AACTAAAGTCAAAAAATAATATGACTTGGACTGAGTCTTAGTAAAAAAAAATGATATGACTTAGA
1 AACTAAAGTCAAAAAATAAAATGACTTGGACTGAGTCTCAG-AAAAAAAAATGATATAACTTAGA
14529023 CTA
65 CTA
* * * * *
14529026 AGCCAACA-TCAAAAAATTGATATGACTTAGACTGAG
1 AACTAA-AGTCAAAAAA-TAAAATGACTTGGACTGAG
14529062 CTAAAGTGAA
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
66 19 0.21
67 6 0.07
68 44 0.49
69 18 0.20
70 3 0.03
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.24
Consensus pattern (67 bp):
AACTAAAGTCAAAAAATAAAATGACTTGGACTGAGTCTCAGAAAAAAAAATGATATAACTTAGAC
TA
Found at i:14528967 original size:101 final size:102
Alignment explanation
Indices: 14528862--14529068 Score: 229
Period size: 101 Copynumber: 2.0 Consensus size: 102
14528852 AATTCAATTG
* * * ** * * *
14528862 AAGTCTAAAAATGAGATGACTTGAATTGA-ACTGAAGTCTAAAAATATAAAATGACTTGGACTGA
1 AAGTCAAAAAATAAGATGACTTGAACTGAGACT-AAGTAAAAAAAAATAAAATGACTTAGACTAA
14528926 GCCAAAATCAAAAAA-TGATATAACTTAGACTAAACTA
65 GCCAAAATCAAAAAATTGATATAACTTAGACTAAACTA
* * * * * *
14528963 AAGTCAAAAAATAATATGACTTGGACTGAGTCTTAGTAAAAAAAAATGATATGACTTAGACTAAG
1 AAGTCAAAAAATAAGATGACTTGAACTGAGACTAAGTAAAAAAAAATAAAATGACTTAGACTAAG
* * * *
14529028 CCAACATCAAAAAATTGATATGACTTAGACTGAGCTA
66 CCAAAATCAAAAAATTGATATAACTTAGACTAAACTA
14529065 AAGT
1 AAGT
14529069 GAAATGAGTT
Statistics
Matches: 86, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
101 61 0.71
102 25 0.29
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.25
Consensus pattern (102 bp):
AAGTCAAAAAATAAGATGACTTGAACTGAGACTAAGTAAAAAAAAATAAAATGACTTAGACTAAG
CCAAAATCAAAAAATTGATATAACTTAGACTAAACTA
Found at i:14528971 original size:33 final size:33
Alignment explanation
Indices: 14528912--14529068 Score: 138
Period size: 33 Copynumber: 4.7 Consensus size: 33
14528902 AAAATATAAA
* * * *
14528912 ATGACTTGGACTGAGCCAAAATCAAAAAATGAT
1 ATGACTTAGACTAAGCTAAAGTCAAAAAATGAT
* * *
14528945 ATAACTTAGACTAAACTAAAGTCAAAAAATAAT
1 ATGACTTAGACTAAGCTAAAGTCAAAAAATGAT
* * * *
14528978 ATGACTTGGACTGAGTCT-TAGTAAAAAAAAATGAT
1 ATGACTTAGACTAAG-CTAAAGT--CAAAAAATGAT
*
14529013 ATGACTTAGACTAAGCCAACA-TCAAAAAATTGAT
1 ATGACTTAGACTAAGCTAA-AGTCAAAAAA-TGAT
*
14529047 ATGACTTAGACTGAGCTAAAGT
1 ATGACTTAGACTAAGCTAAAGT
14529069 GAAATGAGTT
Statistics
Matches: 96, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
33 47 0.49
34 25 0.26
35 23 0.24
36 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.25
Consensus pattern (33 bp):
ATGACTTAGACTAAGCTAAAGTCAAAAAATGAT
Found at i:14529204 original size:33 final size:33
Alignment explanation
Indices: 14529099--14529207 Score: 103
Period size: 33 Copynumber: 3.3 Consensus size: 33
14529089 TAAGTTGGAA
* **
14529099 AATGATATTACTTGGACTAAATCAAAG-CTGAAT
1 AATGATATGACTTGGACTAAGCCAAAGTC-GAAT
* * * * *
14529132 AATGATATGACCTGAACTGAGCCAAAATTGAAT
1 AATGATATGACTTGGACTAAGCCAAAGTCGAAT
* *
14529165 AGTGATATGACTTGGACTAAGCCAAAGTCAAAT
1 AATGATATGACTTGGACTAAGCCAAAGTCGAAT
*
14529198 ACTGATATGA
1 AATGATATGA
14529208 AAGATCTTGA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (33 bp):
AATGATATGACTTGGACTAAGCCAAAGTCGAAT
Found at i:14532235 original size:18 final size:19
Alignment explanation
Indices: 14532180--14532228 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
14532170 GATGCATTTC
* *
14532180 CCATGCAAGACCCCAAACAA
1 CCATGCAA-ACCCAAAACCA
14532200 CCATGCAAACCCAAAACCA
1 CCATGCAAACCCAAAACCA
14532219 CCATG-AAACC
1 CCATGCAAACC
14532229 TTAAACCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 5 0.19
19 14 0.52
20 8 0.30
ACGTcount: A:0.45, C:0.41, G:0.08, T:0.06
Consensus pattern (19 bp):
CCATGCAAACCCAAAACCA
Found at i:14532348 original size:20 final size:20
Alignment explanation
Indices: 14532321--14532373 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
14532311 CCTTAACCTT
14532321 AAACCTTAAACCCAAAATTG
1 AAACCTTAAACCCAAAATTG
*
14532341 AAATCTTAAACCCAAAATTG
1 AAACCTTAAACCCAAAATTG
*
14532361 AAACCCTAAACCC
1 AAACCTTAAACCC
14532374 CAAACCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.49, C:0.28, G:0.04, T:0.19
Consensus pattern (20 bp):
AAACCTTAAACCCAAAATTG
Found at i:14533833 original size:12 final size:12
Alignment explanation
Indices: 14533810--14533891 Score: 57
Period size: 11 Copynumber: 6.9 Consensus size: 12
14533800 TTTTTATTTG
14533810 TTTTTACTTTTTA
1 TTTTTA-TTTTTA
14533823 TCTTTTATTTTTA
1 T-TTTTATTTTTA
*
14533836 TTTTTA-TTTTG
1 TTTTTATTTTTA
*
14533847 TTTTTA-ATTT-
1 TTTTTATTTTTA
*
14533857 TTTGTATATTTT-
1 TTTTTAT-TTTTA
*
14533869 TGTTT-TTTTTA
1 TTTTTATTTTTA
14533880 TTTTATATTTTT
1 TTTT-TATTTTT
14533892 TTGTTTACTT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
10 9 0.16
11 17 0.30
12 12 0.21
13 13 0.23
14 5 0.09
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:14533834 original size:6 final size:6
Alignment explanation
Indices: 14533810--14533891 Score: 57
Period size: 6 Copynumber: 13.8 Consensus size: 6
14533800 TTTTTATTTG
* *
14533810 TTTTTA CTTTTTA TCTTTTA TTTTTA TTTTTA -TTTTG TTTTTA -ATTT-
1 TTTTTA -TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
14533857 TTTGTA TATTTT- TGTTT- TTTTTA TTTTATA TTTTT
1 TTTTTA T-TTTTA TTTTTA TTTTTA TTTT-TA TTTTT
14533892 TTGTTTACTT
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
5 16 0.27
6 23 0.38
7 21 0.35
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:14533845 original size:24 final size:22
Alignment explanation
Indices: 14533825--14533893 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
14533815 ACTTTTTATC
14533825 TTTTATTTTTATTTTTATTTTGT
1 TTTTATTTTTATTTTTATTTT-T
* *
14533848 TTTTAATTTTT-TGTATATTTTT
1 TTTT-ATTTTTATTTTTATTTTT
*
14533870 GTTT-TTTTTATTTTATATTTTT
1 TTTTATTTTTATTTT-TATTTTT
14533892 TT
1 TT
14533894 GTTTACTTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
20 5 0.14
21 2 0.05
22 12 0.32
23 12 0.32
24 6 0.16
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.81
Consensus pattern (22 bp):
TTTTATTTTTATTTTTATTTTT
Found at i:14533894 original size:24 final size:24
Alignment explanation
Indices: 14533825--14533897 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
14533815 ACTTTTTATC
*
14533825 TTTTATTTTTATTTTTATTTTGTTTT
1 TTTTA-TTTTATATTT-TTTTGTTTT
* * *
14533851 TAATT-TTTTGTATATTTTTGTTTT
1 T-TTTATTTTATATTTTTTTGTTTT
14533875 TTTTATTTTATATTTTTTTGTTT
1 TTTTATTTTATATTTTTTTGTTT
14533898 ACTTCCTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
23 2 0.05
24 26 0.68
25 7 0.18
26 1 0.03
27 2 0.05
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (24 bp):
TTTTATTTTATATTTTTTTGTTTT
Found at i:14534131 original size:31 final size:31
Alignment explanation
Indices: 14533961--14534132 Score: 114
Period size: 31 Copynumber: 5.5 Consensus size: 31
14533951 GATTAATTTA
* * *
14533961 CAAGTCAAATGAAGTGACAAAGACTAAATTG
1 CAAGTCAAATGAAGTGACCAAGACTGAACTG
*** * * **
14533992 CAAGTTGCATGAAATGATCAAGACT-ATACCA
1 CAAGTCAAATGAAGTGACCAAGACTGA-ACTG
* * * * *
14534023 TAAGTCACATGAGGTGA-CAAGGACTAAACCG
1 CAAGTCAAATGAAGTGACCAA-GACTGAACTG
* * *
14534054 TAAGTCAAATGAGGTGACCAAGACTGAATTG
1 CAAGTCAAATGAAGTGACCAAGACTGAACTG
* *
14534085 CAAGTCAAATAAAGTGACCAAGATTGAACTG
1 CAAGTCAAATGAAGTGACCAAGACTGAACTG
**
14534116 CAAGTTGAATGAAGTGA
1 CAAGTCAAATGAAGTGA
14534133 TCGAGACTAA
Statistics
Matches: 110, Mismatches: 27, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
30 4 0.04
31 102 0.93
32 4 0.04
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (31 bp):
CAAGTCAAATGAAGTGACCAAGACTGAACTG
Found at i:14534140 original size:62 final size:62
Alignment explanation
Indices: 14534055--14534226 Score: 175
Period size: 62 Copynumber: 2.8 Consensus size: 62
14534045 ACTAAACCGT
* * * * ** *
14534055 AAGTCAAATGAGGTGACCAAGACTGAATTGCAAGTCAAATAAAGTGACCAAGATTGAACTGC
1 AAGTCGAATGAAGTGATCGAGACTGAATTATAAGTCGAATAAAGTGACCAAGATTGAACTGC
* * * * * * *
14534117 AAGTTGAATGAAGTGATCGAGACTAAATCATAAGTCGAAT-AAGATGATCGAGATTGAATTGT
1 AAGTCGAATGAAGTGATCGAGACTGAATTATAAGTCGAATAAAG-TGACCAAGATTGAACTGC
* * *
14534179 AGGTCGAATGAAGTGATCGAGATTGAACTATAAGTCGAATAAAGTGAC
1 AAGTCGAATGAAGTGATCGAGACTGAATTATAAGTCGAATAAAGTGAC
14534227 TATGACTAAA
Statistics
Matches: 87, Mismatches: 21, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
61 3 0.03
62 81 0.93
63 3 0.03
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (62 bp):
AAGTCGAATGAAGTGATCGAGACTGAATTATAAGTCGAATAAAGTGACCAAGATTGAACTGC
Found at i:14534141 original size:93 final size:93
Alignment explanation
Indices: 14534044--14534256 Score: 230
Period size: 93 Copynumber: 2.3 Consensus size: 93
14534034 AGGTGACAAG
14534044 GACTAAACCGTAAGTCAAATGAGGTGACCAAGACTGAATTGCAAGTCAAATAAAGTGACCAAGAT
1 GACTAAACCGTAAGTCAAATGAGGTGACCAAGACTGAATTGCAAGTCAAATAAAGTGACCAAGAT
* * *
14534109 TGAACTGCAAGTTGAATGAAGTGATCGA-
66 TGAACTACAAGTCGAATAAAGTGA-CGAT
* * * * * * * * * * * * * *
14534137 GACTAAATCATAAGTCGAATAAGATGATCGAGATTGAATTGTAGGTCGAATGAAGTGATCGAGAT
1 GACTAAACCGTAAGTCAAATGAGGTGACCAAGACTGAATTGCAAGTCAAATAAAGTGACCAAGAT
* *
14534202 TGAACTATAAGTCGAATAAAGTGACTAT
66 TGAACTACAAGTCGAATAAAGTGACGAT
*
14534230 GACTAAACCGTAAGTCAAGTGAGGTGA
1 GACTAAACCGTAAGTCAAATGAGGTGA
14534257 TTGCTAATCT
Statistics
Matches: 94, Mismatches: 25, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
92 2 0.02
93 92 0.98
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (93 bp):
GACTAAACCGTAAGTCAAATGAGGTGACCAAGACTGAATTGCAAGTCAAATAAAGTGACCAAGAT
TGAACTACAAGTCGAATAAAGTGACGAT
Found at i:14534168 original size:31 final size:31
Alignment explanation
Indices: 14534117--14534225 Score: 123
Period size: 31 Copynumber: 3.5 Consensus size: 31
14534107 ATTGAACTGC
* * *
14534117 AAGTTGAATGAAGTGATCGAGACTAAATCAT
1 AAGTCGAATGAAGTGATCGAGATTGAATCAT
**
14534148 AAGTCGAAT-AAGATGATCGAGATTGAATTGT
1 AAGTCGAATGAAG-TGATCGAGATTGAATCAT
*
14534179 AGGTCGAATGAAGTGATCGAGATTGAA-CTAT
1 AAGTCGAATGAAGTGATCGAGATTGAATC-AT
*
14534210 AAGTCGAATAAAGTGA
1 AAGTCGAATGAAGTGA
14534226 CTATGACTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
30 3 0.05
31 59 0.91
32 3 0.05
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.26
Consensus pattern (31 bp):
AAGTCGAATGAAGTGATCGAGATTGAATCAT
Found at i:14534371 original size:32 final size:32
Alignment explanation
Indices: 14534319--14534439 Score: 129
Period size: 32 Copynumber: 3.8 Consensus size: 32
14534309 GCTAGATAAT
*
14534319 CTAGGCTTAAA-TCTCATTGGTGCCAGGTAAA
1 CTAGGCTTAAATTTTCATTGGTGCCAGGTAAA
** *
14534350 CT-GCGCTTAAATTTTCATTGGTGTGAGCTAAA
1 CTAG-GCTTAAATTTTCATTGGTGCCAGGTAAA
* * ** *
14534382 CTAGACTTAAATTTTTATTGGTGATAGGTAGA
1 CTAGGCTTAAATTTTCATTGGTGCCAGGTAAA
*
14534414 CTAGGCTTAAATTTTTATTGGTGCCA
1 CTAGGCTTAAATTTTCATTGGTGCCA
14534440 TATAAACTGG
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
30 1 0.01
31 9 0.12
32 63 0.85
33 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.37
Consensus pattern (32 bp):
CTAGGCTTAAATTTTCATTGGTGCCAGGTAAA
Found at i:14534657 original size:22 final size:22
Alignment explanation
Indices: 14534629--14534766 Score: 123
Period size: 22 Copynumber: 6.3 Consensus size: 22
14534619 AGTTAATCTA
14534629 GGCTTATATGCCAACTAAACTG
1 GGCTTATATGCCAACTAAACTG
* *
14534651 GGCTTATATGCCAATTAATCTG
1 GGCTTATATGCCAACTAAACTG
* * *
14534673 GGCTTATATGCCAGCTAATCTA
1 GGCTTATATGCCAACTAAACTG
* * *
14534695 GGCTTACATGCCAACAAAACTT
1 GGCTTATATGCCAACTAAACTG
* * ** * *
14534717 GGCTTATGTGCTAGTTAATCTA
1 GGCTTATATGCCAACTAAACTG
* * *
14534739 GGCTTGTATGTCAACTAGACTG
1 GGCTTATATGCCAACTAAACTG
14534761 GGCTTA
1 GGCTTA
14534767 AAACTTAAAT
Statistics
Matches: 88, Mismatches: 28, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (22 bp):
GGCTTATATGCCAACTAAACTG
Found at i:14534735 original size:66 final size:66
Alignment explanation
Indices: 14534622--14534748 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
14534612 AATTTTTAGT
* * *
14534622 TAATCTAGGCTTATATGCCAACTAAACTGGGCTTATATGCCAATTAATCTGGGCTTATATGCCAG
1 TAATCTAGGCTTACATGCCAACAAAACTGGGCTTATATGCCAATTAATCTAGGCTTATATGCCAG
14534687 C
66 C
* * * * *
14534688 TAATCTAGGCTTACATGCCAACAAAACTTGGCTTATGTGCTAGTTAATCTAGGCTTGTATG
1 TAATCTAGGCTTACATGCCAACAAAACTGGGCTTATATGCCAATTAATCTAGGCTTATATG
14534749 TCAACTAGAC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (66 bp):
TAATCTAGGCTTACATGCCAACAAAACTGGGCTTATATGCCAATTAATCTAGGCTTATATGCCAG
C
Found at i:14536242 original size:16 final size:15
Alignment explanation
Indices: 14536221--14536256 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14536211 TCTTTTATCC
*
14536221 TTTTTCTTTCCTTTTT
1 TTTTTCTCT-CTTTTT
14536237 TTTTTCTCTCTTTTT
1 TTTTTCTCTCTTTTT
14536252 TTTTT
1 TTTTT
14536257 GACATTCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTCTCTTTTT
Found at i:14536255 original size:14 final size:14
Alignment explanation
Indices: 14536207--14536255 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 14
14536197 GTCATAACCA
* *
14536207 CTTTTCTTTTATC-
1 CTTTTTTTTTCTCT
*
14536220 CTTTTTCTTTC-CT
1 CTTTTTTTTTCTCT
14536233 -TTTTTTTTTCTCT
1 CTTTTTTTTTCTCT
14536246 CTTTTTTTTT
1 CTTTTTTTTT
14536256 TGACATTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 10 0.34
13 10 0.34
14 9 0.31
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (14 bp):
CTTTTTTTTTCTCT
Found at i:14538924 original size:139 final size:138
Alignment explanation
Indices: 14538769--14539043 Score: 408
Period size: 139 Copynumber: 2.0 Consensus size: 138
14538759 CATACCTCTT
*
14538769 TTTTCTCTATTTTAGTT-ATTGAAATTTACATGAGTTCATTGAACTTGTTTTTGCATGTTTTGAG
1 TTTTCTCTATTTTAGTTGA-TGAAATTTACATAAGTTCATTGAACTTGTTTTTGCATGTTTTGAG
* ** *
14538833 TTAATTCTTTTTGTTTATTTTGAAGTTCATTTATTGTTCTTAATGTCTTCAATTCATTTTTAGTT
65 CTAATTCTTTTTGTTTATTTTGAAG-TCATTTATAATTCTTAATGTCTTCAATTCATTTTCAGTT
14538898 TATTCTTTTG
129 TATTCTTTTG
* * **
14538908 TTTTCTCTGTTTTAGTTGATGAAATTTACTTAAGTTCATTGAGTTTGTTTTTGCATGTTTTGAGC
1 TTTTCTCTATTTTAGTTGATGAAATTTACATAAGTTCATTGAACTTGTTTTTGCATGTTTTGAGC
* * * *
14538973 TGATTCTTTTTGTTTATTTTGAAGTCATTTATAATTTTTAATGTCTTTAGTTCATTTTCAGTTTA
66 TAATTCTTTTTGTTTATTTTGAAGTCATTTATAATTCTTAATGTCTTCAATTCATTTTCAGTTTA
14539038 TTCTTT
131 TTCTTT
14539044 CATTTGAGTT
Statistics
Matches: 122, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
138 41 0.34
139 80 0.66
140 1 0.01
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (138 bp):
TTTTCTCTATTTTAGTTGATGAAATTTACATAAGTTCATTGAACTTGTTTTTGCATGTTTTGAGC
TAATTCTTTTTGTTTATTTTGAAGTCATTTATAATTCTTAATGTCTTCAATTCATTTTCAGTTTA
TTCTTTTG
Found at i:14539157 original size:19 final size:20
Alignment explanation
Indices: 14539112--14539158 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
14539102 TAAGTTTCGA
14539112 TTTACATTTCCTTGTTCGGT
1 TTTACATTTCCTTGTTCGGT
*
14539132 TTT-CATTT-CTT-TTCATGT
1 TTTACATTTCCTTGTTC-GGT
14539150 TTTACATTT
1 TTTACATTT
14539159 GAGTTTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.12
18 8 0.33
19 10 0.42
20 3 0.12
ACGTcount: A:0.13, C:0.17, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTACATTTCCTTGTTCGGT
Found at i:14541317 original size:17 final size:18
Alignment explanation
Indices: 14541297--14541332 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
14541287 AAATTTAATA
14541297 TTTTTT-AAAA-TATTTT
1 TTTTTTCAAAATTATTTT
14541313 TTTTTTCAAAATTATTTT
1 TTTTTTCAAAATTATTTT
14541331 TT
1 TT
14541333 GAATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTTCAAAATTATTTT
Found at i:14542486 original size:16 final size:16
Alignment explanation
Indices: 14542465--14542520 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
14542455 ATAATAATTT
14542465 TTAATATTTTATTAAA
1 TTAATATTTTATTAAA
*
14542481 TTAATATTTGT-TTGAA
1 TTAATATTT-TATTAAA
*
14542497 TT-ATAATTTATATAAA
1 TTAATATTTTAT-TAAA
14542513 TTTAATAT
1 -TTAATAT
14542521 AACAATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 1 0.03
15 6 0.19
16 18 0.58
17 3 0.10
18 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (16 bp):
TTAATATTTTATTAAA
Found at i:14546545 original size:42 final size:43
Alignment explanation
Indices: 14546450--14546557 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
14546440 ACAATGCAAG
* *
14546450 TTGAAAGTT-AAAGATTCACAATTTAAGTTCAAAGAATCACAATT
1 TTGAAA-TTCAAAGATTCACAA-ATAAATTCAAAGAATCACAATT
* * **
14546494 TTGGAATTCAAAGATTCACAAATAAATTCAAAGATTTGC-ATT
1 TTGAAATTCAAAGATTCACAAATAAATTCAAAGAATCACAATT
*
14546536 TTGAAATTCAAATATTCACAAA
1 TTGAAATTCAAAGATTCACAAA
14546558 GTTTCAAAGG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 23 0.42
43 15 0.27
44 17 0.31
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.32
Consensus pattern (43 bp):
TTGAAATTCAAAGATTCACAAATAAATTCAAAGAATCACAATT
Found at i:14546640 original size:16 final size:16
Alignment explanation
Indices: 14546590--14546640 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
14546580 AAAGATTTGT
14546590 AAGAACTTAGATTCAC
1 AAGAACTTAGATTCAC
* *
14546606 AAAAACTTAGATTCGC
1 AAGAACTTAGATTCAC
*
14546622 AAGAATTTAGATTCAC
1 AAGAACTTAGATTCAC
14546638 AAG
1 AAG
14546641 GATTCATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (16 bp):
AAGAACTTAGATTCAC
Found at i:14546814 original size:17 final size:16
Alignment explanation
Indices: 14546789--14546869 Score: 81
Period size: 17 Copynumber: 4.9 Consensus size: 16
14546779 TCAATTTCGT
*
14546789 AAGAATTCAGATTCAC
1 AAGAATTCAAATTCAC
*
14546805 AAGAATTTCAAGTTCAC
1 AAGAA-TTCAAATTCAC
14546822 AAGAATTCAAATTCAC
1 AAGAATTCAAATTCAC
* * **
14546838 ATGAATTTTAGGTTCAC
1 AAGAA-TTCAAATTCAC
14546855 AAGAAGTTCAAATTC
1 AAGAA-TTCAAATTC
14546870 CATTCGAGAG
Statistics
Matches: 51, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
16 19 0.37
17 32 0.63
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (16 bp):
AAGAATTCAAATTCAC
Found at i:14546814 original size:33 final size:33
Alignment explanation
Indices: 14546774--14546869 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 33
14546764 AGTTTTGCAT
* ** *
14546774 GAATTTCAATTTCGTAAGAATTCAGATTCACAA
1 GAATTTCAAGTTCACAAGAATTCAAATTCACAA
*
14546807 GAATTTCAAGTTCACAAGAATTCAAATTCACAT
1 GAATTTCAAGTTCACAAGAATTCAAATTCACAA
* *
14546840 GAATTTTAGGTTCACAAGAAGTTCAAATTC
1 GAATTTCAAGTTCACAAGAA-TTCAAATTC
14546870 CATTCGAGAG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 46 0.84
34 9 0.16
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (33 bp):
GAATTTCAAGTTCACAAGAATTCAAATTCACAA
Done.