Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 66 of 84
Found at i:14644899 original size:129 final size:129
Alignment explanation
Indices: 14644579--14645678 Score: 867
Period size: 130 Copynumber: 8.5 Consensus size: 129
14644569 CTTCGAAGAT
* ** * ** * *
14644579 GATTATTTAGAAAATAATTATAAGAGAA-GGGTATTTTTGTAGTTATTATATGAGGGCATGATAG
1 GATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGAGCATAATAG
** * * * * * * * * *
14644643 TCTCTTTGGTCTCTTGTTAATTTCTTACCATATACTGGAAAA-GGAATTTTGCTAATTTTATAGG
66 TCAATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAAAGGGCATTTTGGTAATTTCATAGG
* * * * *
14644707 GCATTATATAGTAAATAATTATAAAATAAAAGGGCATTTTCATAATTATGGTATGATG-GCATAA
1 G-ATTATTTAGTAAATAATTATAAGA-GAATGGGTATTTTCATAATTATGGTATGA-GAGCATAA
* **
14644771 TAGTCAATTTGGCCACATGTCAATTTCTTATCCTATAA-GAAAAGGGCATTTTGGTAATACCATA
63 TAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGGCATTTTGGTAATTTCATA
14644835 GG
128 GG
* * * * * *
14644837 GGTTAATTTACTAAATAATTACAATAGAAGGGGTATTTTCATAATTATGGTATGAGAACATAATA
1 GATT-ATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGAGCATAATA
* * * * * * * ** * *
14644902 GTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTATTTTCATAATTTTAAAGG
65 GTCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGGCATTTTGGTAATTTCATAGG
* * * * * *
14644967 AGATTATTTAGTAAACAATTATAAGAGAA-GGAATATTTTCGTAATTATGGTATGAGGGAATAAC
1 -GATTATTTAGTAAATAATTATAAGAGAATGG-GTATTTTCATAATTATGGTATGAGAGCATAAT
* * * * *
14645031 AATCAATTTGGCCACATGTAAATTTTTTATCATATAATGAAAA-GGCATTTTGGTAGTGTCATAA
64 AGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGGCATTTTGGTAATTTCAT-A
14645095 GG
128 GG
* * * * * *
14645097 GATAATTTAGTAAATAATTATAAAAGAATAGGTATTTTTGA-AATTATGGTATAAGAGCGTAATA
1 GATTATTTAGTAAATAATTATAAGAGAATGGGTA-TTTTCATAATTATGGTATGAGAGCATAATA
* ** * * * * * ** *
14645161 GTCAAATTGATCACATGTCAGTTCCTTA-CTATATAATGGAAGGGGTATTTTCATAATTTCAGAG
65 GTCAATTTGGCCACATGTCAATTTCTTATC-ATATAATGAAAAGGGCATTTTGGTAATTTCATAG
*
14645225 AA
129 -G
* * * * * * *
14645227 GATTATTTAATAAATAATTATAAGTGAATAGGTATTTTAATAATTATGGTATGAAAGCATTATAA
1 GATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGAGCATAATAG
* * * *
14645292 TCCATTTGGCCATATGTCAATTTCTTATCATATAATAGAAAA-AGCATTTTTGTAATTTTCATAG
66 TCAATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAAAGGGCATTTTGGTAA-TTTCATAG
14645356 G
129 G
* * * * *
14645357 TGATTATTTAGAAAATAATTATAAGAGAATGAGTTTTTTCGGTAATTATGGTATGAGGGCATAAT
1 -GATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTC-ATAATTATGGTATGAGAGCATAAT
* * * * * ** ** *
14645422 ACTCCATTTGGCCATATGCCAATTTCTTATCATATACT-ACAAAGGTTATTTTTCTATTTTCATT
64 AGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGA-AAAGGGCATTTTGGTAATTTCA-T
14645486 AGG
127 AGG
* * * * *
14645489 GATTATTGAGT-AATAATTATAAGAGAATGGGTATTTTAATAATTATGATATAAGGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGAGCATAATAG
** * * * * ** **
14645553 TCAATTTGATCACATGTCAATTTCTTGTTATATAATAAAAAGAGCATTTTGGTAATTTTGTCAAA
66 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGGCATTTTGGTAATTTCAT-AGG
* * * *
14645618 GATAATTTTG-ATAATAATTATAAGAGAA-GGTGTATTTTCATAATTATGGTTTGAGGGCATA
1 GATTATTTAGTA-AATAATTATAAGAGAATGG-GTATTTTCATAATTATGGTATGAGAGCATA
14645679 TTAATTTCTT
Statistics
Matches: 760, Mismatches: 182, Indels: 58
0.76 0.18 0.06
Matches are distributed among these distances:
128 4 0.01
129 262 0.34
130 310 0.41
131 116 0.15
132 68 0.09
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (129 bp):
GATTATTTAGTAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGAGCATAATAG
TCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGGCATTTTGGTAATTTCATAGG
Found at i:14645049 original size:259 final size:257
Alignment explanation
Indices: 14644695--14647198 Score: 1000
Period size: 259 Copynumber: 9.8 Consensus size: 257
14644685 GGAATTTTGC
* * * * * *
14644695 TAATTTTATAGG-GCATTATATAGTAAATAATTATAAAATAAAAGGGCATTTTCATAATTATGGT
1 TAATTTTAAAGGAG-ATTATTTAGTAAATAATTAT--AAGAGAA-GGTATTTTAATAATTATGGT
* * * *
14644759 ATGATGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCCTATAA-GAAAAGGGCATTTT
62 ATGAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAA-AGCATTTT
* * * * *
14644823 GGTAATACCATAGGGGTTAATTTACTAAATAATTACAATAGAAGGGGTATTTTCATAATTATGGT
126 GGTAATATCATAGGGGTTAATTTAGTAAATAATTATAAAAGAATGGGTATTTTCATAATTATGGT
*
14644888 ATGAGAACATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTATTTT
191 ATGAGAGCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTATTTT
14644953 CA
256 CA
* **
14644955 TAATTTTAAAGGAGATTATTTAGTAAACAATTATAAGAGAAGGAATATTTTCGTAATTATGGTAT
1 TAATTTTAAAGGAGATTATTTAGTAAATAATTATAAGAGAAGG--TATTTTAATAATTATGGTAT
* * * * *
14645020 GAGGGAATAACAATCAATTTGGCCACATGTAAATTTTTTATCATATAATGAAAAGGCATTTTGGT
64 GAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGCATTTTGGT
* * * * * *
14645085 AGTGTCATAAGGGATAATTTAGTAAATAATTATAAAAGAATAGGTATTTTTGA-AATTATGGTAT
129 AATATCATAGGGGTTAATTTAGTAAATAATTATAAAAGAATGGGTA-TTTTCATAATTATGGTAT
* * * * * **
14645149 AAGAGCGTAATAGTCAAA-TTGATCACATGTCAGTTCCTTACTATATAATGGAAGGGGTATTTTC
193 GAGAGCATAATAGT-AAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTATTTTC
14645213 A
257 A
* * * * *
14645214 TAATTTCAGAGAAGATTATTTAATAAATAATTATAAGTGAATAGGTATTTTAATAATTATGGTAT
1 TAATTTTAAAGGAGATTATTTAGTAAATAATTATAAGAG-A-AGGTATTTTAATAATTATGGTAT
** * * * *
14645279 GAAAGCATTATAATCCATTTGGCCATATGTCAATTTCTTATCATATAATAGAAAAAGCATTTTTG
64 GAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAAAAGCATTTTGG
* * * * * * *
14645344 TAATTTTCATAGGTGATT-ATTTAGAAAATAATTATAAGAGAATGAGTTTTTTCGGTAATTATGG
128 TAA-TATCATAGG-GGTTAATTTAGTAAATAATTATAAAAGAATGGGTATTTTC-ATAATTATGG
* * ** * * * * * * * *
14645408 TATGAGGGCATAATACTCCATTTGGCCATATGCCAATTTCTTATCATAT-ACTACAAAGGTTATT
190 TATGAGAGCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTA-AAGGGGTA-T
14645472 TTTC-
253 TTTCA
* * *
14645476 T-ATTTTCATTAGG-GATTATTGAGT-AATAATTATAAGAGAATGGGTATTTTAATAATTATGAT
1 TAATTTT-A-AAGGAGATTATTTAGTAAATAATTATAAGAGAA--GGTATTTTAATAATTATGGT
* * ** * * *
14645538 ATAAGGGCATAATAGTCAATTTGATCACATGTCAATTTCTTGTTATATAATAAAAAGAGCATTTT
62 ATGAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAA-AGCATTTT
* ** ** * * *
14645603 GGTAATTTTGTCA-AAGATAATTTTG-ATAATAATTATAAGAGAA-GGTGTATTTTCATAATTAT
126 GGTAATATCAT-AGGGGTTAATTTAGTA-AATAATTATAAAAGAATGG-GTATTTTCATAATTAT
* * * *
14645665 GGTTTGAGGGCAT-AT--T-AATTT-----C-T-T-A------T--CATATAATGAGA-GGGTAT
188 GGTATGAGAGCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTAT
*
14645709 TGTCA
253 TTTCA
* ** * * * *
14645714 TAATTTCATTGGAAATTATTTAGCAAATAATTATAAGAGAATAGGTATTTTCATAATTATGGCAT
1 TAATTTTAAAGGAGATTATTTAGTAAATAATTATAAGAG-A-AGGTATTTTAATAATTATGGTAT
* * * * * **
14645779 -ACAGGCATAATAGTCTATTTGGCCATATGTCAATTTCTTATTATATAATGGAAATGGCATTTTG
64 GA-GGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAAAAGCATTTTG
* ** * * * * * * *
14645843 GTAACT-TAATAAATGATT-ATTTAGCAAAGAATTATAAAAGAAAGGAGTATTTCCGTAATTACG
127 GTAA-TATCAT-AGGGGTTAATTTAGTAAATAATTATAAAAGAATGG-GTATTTTCATAATTATG
* * * * ** * * * * ** *****
14645906 ATACGA-AGGGAAAATAGTCTACTTGGCCACATGTCAATTTTTTATAATATAA-TAGAAACTCCA
189 GTATGAGA-GCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTA-AAGGGGTA
14645969 TTTT-A
252 TTTTCA
** * * * * * *
14645974 TTAATTGCATAGGTGATTATTTAGTAAATAATTATAAAAAAATGAGTATTTTTAGAATTATGGTA
1 -TAATTTTAAAGGAGATTATTTAGTAAATAATTATAAGAGAA-G-GTATTTTAATAATTATGGTA
* * ** * * * *
14646039 AGAAGGCATAA-AAGTTGATTTAGACACATATCAATTTC-T-T-A-A-CAT-----A--ATTTT-
63 TGAGGGCATAATAA-TCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGCATTTTG
* * * ** * *
14646090 G--------TAGGGGATT-TTTTAATAAATAATTATAACAG-ATGTATTATTTTCATAGTTATGT
127 GTAATATCATAGGGG-TTAATTTAGTAAATAATTATAAAAGAATG-GGTATTTTCATAATTATGG
* ** * * * * * ** *
14646145 TATGAG-GAAATAATAGTCCATTTGGCTACATTTCAATTTCTTATCATATAATGGGAA--TGTCA
190 TATGAGAG-CATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAAT-TAAAGGGGT-A
*
14646207 TTTGCA
252 TTTTCA
*** * ** * *
14646213 -AATTTCCTAGGCGATTATTTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTTATTACGGTA
1 TAATTTTAAAGGAGATTA-TTTAGTAAATAATTATAAGAG-AA-GGTATTTTAATAATTATGGTA
* * * * * * *
14646277 TAAGGGCATAATAGTTAATTTGGCCATATGTCAATTTCTTATCATATAATGGAAATGAAATTTTG
63 TGAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAG-CATTTTG
* * ** * * *
14646342 GTAATTTCTTAGGGGATT-ATTTAGTAAATAAAAAGAAGAA-AAGGGGTATTTTCATAATTATGA
127 GTAATATCATAGGGG-TTAATTTAGTAAATAATTATAA-AAGAATGGGTATTTTCATAATTATGG
* * ** * * * * ** * **** *
14646405 TATAAGGGCATAATAGTCTATTTGACCATATTTCAATTTCATATTATATAATGGAAAAAAATGTT
190 TATGAGAGCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAAT-TAAAGGGGTATT
14646470 TT-A
254 TTCA
* * * ** *
14646473 GTAATTTCTTGAA-G-GCTAATTTAGTAAATAATTATAA-A-AAGGGTATTTTTGTAATTATAGT
1 -TAA-TT-TTAAAGGAGATTATTTAGTAAATAATTATAAGAGAA-GGTATTTTAATAATTATGGT
* * * * ** * * * * * *
14646534 ATAAAGACATAATAGTCAATTTTACCATATGTCTATTTCTTTTCATATAATGGGAAAGGAATTTT
62 ATGAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAAAAGCATTTT
* * ** * *
14646599 CGTAATTTCATAATAGATT-ATTTAGTAAATAATTATAAGAG-ATGGGATATATTTTCATAATTA
126 GGTAATATCAT-AGGGGTTAATTTAGTAAATAATTATAAAAGAATGGG---TATTTTCATAATTA
* * * * * * * * * *
14646662 CGGTATGAG-GATATAATAATCAATTTTACAATATGTCAATTTCTTA-TATATAATGGAAA-GGG
187 TGGTATGAGAG-CATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAAT-TAAAGGGG
14646724 TATTTTCA
250 TATTTTCA
* * * *
14646732 TAA-TTTAGTAGGAGATTATTTAATAAATAATTATAAGAGAAGTGGTATTTTCATAGTTATGGTA
1 TAATTTTA-AAGGAGATTATTTAGTAAATAATTATAAGAGAA--GGTATTTTAATAATTATGGTA
* * * * * *
14646796 TGAGGGCATAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGGAAAAGTCGTTTTG
63 TGAGGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAG-CATTTTG
* * * * * * * * *
14646861 GTATTTTCTTATA-GGCTT-CTTTAAT-AATGATTATAAGAGAAAGGGTATTTT-AGTAATTCTG
127 GTAATATC--ATAGGGGTTAATTTAGTAAATAATTATAAAAGAATGGGTATTTTCA-TAATTATG
* * * * * * * * * **
14646922 GTATGA-AGGCTTAAAAGTCAGTTTGATCACATGTCAATTTTTTATCATATAATGAAAATGGTAT
189 GTATGAGA-GCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTAT
14646986 TTTCA
253 TTTCA
* * * * * **
14646991 TAATTTCT-TAGGAGTTTATTTAGTAAATAGTCATAA-AAAAGGGTTATAATTTTGTAATTATGG
1 TAATTT-TAAAGGAGATTATTTAGTAAATAATTATAAGAGAA-GG-TAT--TTTAATAATTATGG
* * * * * * * * *
14647054 TATAAAGACATAATAGTCAA-TT-GCACAACATGTCCATGTCTTATTATATAATGAAAATGGTAT
61 TATGAGGGCATAATAATCAATTTGGC-C-ACATGTCAATTTCTTATCATATAATGAAAA-AGCAT
* ** * * * * *
14647117 TTTGGTAATTTTTTAGGAGATT-ATATGGTAAATAATTATAAGAGAA-GGGATATTTTTATAATT
123 TTTGGTAATATCATAGG-GGTTAATTTAGTAAATAATTATAAAAGAATGGG-TATTTTCATAATT
*
14647180 ATGGTTTGATG-GCATAATA
186 ATGGTATGA-GAGCATAATA
14647199 ATCCCTTTCG
Statistics
Matches: 1713, Mismatches: 385, Indels: 291
0.72 0.16 0.12
Matches are distributed among these distances:
237 23 0.01
238 135 0.08
239 146 0.09
240 31 0.02
241 5 0.00
242 1 0.00
243 3 0.00
244 3 0.00
247 2 0.00
248 5 0.00
249 2 0.00
250 1 0.00
251 6 0.00
252 2 0.00
255 6 0.00
256 5 0.00
257 12 0.01
258 189 0.11
259 360 0.21
260 340 0.20
261 353 0.21
262 69 0.04
263 12 0.01
264 2 0.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (257 bp):
TAATTTTAAAGGAGATTATTTAGTAAATAATTATAAGAGAAGGTATTTTAATAATTATGGTATGA
GGGCATAATAATCAATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGCATTTTGGTAA
TATCATAGGGGTTAATTTAGTAAATAATTATAAAAGAATGGGTATTTTCATAATTATGGTATGAG
AGCATAATAGTAAATTTGACCACATGTCAGTTTCTTACCATATAATTAAAGGGGTATTTTCA
Found at i:14645926 original size:131 final size:130
Alignment explanation
Indices: 14645728--14646024 Score: 318
Period size: 131 Copynumber: 2.3 Consensus size: 130
14645718 TTCATTGGAA
* * * *
14645728 ATTATTTAGCAAATAATTATAAGAGAATAG-GTATTTTCATAATTATGGCATACAGGCATAATAG
1 ATTATTTAGCAAATAATTATAAAAGAA-AGAGTATTTCCATAATTATCGCATACAGGCAAAATAG
* * * * * *
14645792 TCTATTTGGCCATATGTCAATTTCTTATTATATAATGGAAA-TGGCATTTTGGTAACTT-AATAA
65 TCTACTTGGCCACATGTCAATTTCTTATAATATAATAGAAACT-CCATTTTAGTAA-TTGAATAA
14645855 ATG
128 ATG
* * *
14645858 ATTATTTAGCAAAGAATTATAAAAGAAAGGAGTATTTCCGTAATTA-CG-ATACGAAGGGAAAAT
1 ATTATTTAGCAAATAATTATAAAAGAAA-GAGTATTTCCATAATTATCGCATAC--AGGCAAAAT
* * * *
14645921 AGTCTACTTGGCCACATGTCAATTTTTTATAATATAATAGAAACTCCATTTTATTAATTGCATAG
63 AGTCTACTTGGCCACATGTCAATTTCTTATAATATAATAGAAACTCCATTTTAGTAATTGAATAA
*
14645986 GTG
128 ATG
*
14645989 ATTATTTAGTAAATAATTATAAAA-AAATGAGTATTT
1 ATTATTTAGCAAATAATTATAAAAGAAA-GAGTATTT
14646025 TTAGAATTAT
Statistics
Matches: 140, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
129 5 0.04
130 40 0.29
131 94 0.67
132 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (130 bp):
ATTATTTAGCAAATAATTATAAAAGAAAGAGTATTTCCATAATTATCGCATACAGGCAAAATAGT
CTACTTGGCCACATGTCAATTTCTTATAATATAATAGAAACTCCATTTTAGTAATTGAATAAATG
Found at i:14646365 original size:130 final size:130
Alignment explanation
Indices: 14646154--14647236 Score: 854
Period size: 130 Copynumber: 8.3 Consensus size: 130
14646144 TTATGAGGAA
* * * * * ** **
14646154 ATAATAGTCCATTTGGCTACATTTCAATTTCTTATCATATAATGGGAATGTCA-TTTGCAAATTT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
* * * *
14646218 CCTAGGCGATTATTTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTTATTACGGTATAAGGG
66 CTTAGGAGATTA-TTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAAGGG
14646283 C
130 C
* * * *
14646284 ATAATAGTTAATTTGGCCATATGTCAATTTCTTATCATATAATGGAAATGAAATTTTGGTAATTT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
* ** * * *
14646349 CTTAGGGGATTATTTAGTAAATAAAAAGAAGA-AAAGGGGTATTTTCATAATTATGATATAAGGG
66 CTTAGGAGATTATTTAGTAAATAATTATAAGAGAAA-GGGTATTTTCGTAATTATGGTATAAGGG
14646413 C
130 C
* * * * * ** *
14646414 ATAATAGTCTATTTGACCATATTTCAATTTCATATTATATAATGGAAA-AAAATGTTTTAGTAAT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAA--TTTTGGTAAT
* * * * * *
14646478 TTCTT-GAAGGCTAATTTAGTAAATAATTAT-A-A-AAAGGGTATTTTTGTAATTATAGTATAAA
64 TTCTTAGGA-GATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAAG
*
14646539 GAC
128 GGC
* * * * *
14646542 ATAATAGTCAATTTTACCATATGTCTATTTCTTTTCATATAATGGGAAA-GGAATTTTCGTAATT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAAT-GGAAATGGAATTTTGGTAATT
* ** * * * *
14646606 TCATAATAGATTATTTAGTAAATAATTATAAGAG-ATGGGATATATTTTCATAATTACGGTATGA
65 TCTTAGGAGATTATTTAGTAAATAATTATAAGAGAAAGGG---TATTTTCGTAATTATGGTATAA
**
14646670 GGAT
127 GGGC
* * * * * * **
14646674 ATAATAATCAATTTTACAATATGTCAATTTCTTAT-ATATAATGGAAAGGGTATTTTCATAATTT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
** * * * *
14646738 AGTAGGAGATTATTTAATAAATAATTATAAGAG-AAGTGGTATTTTCATAGTTATGGTATGAGGG
66 CTTAGGAGATTATTTAGTAAATAATTATAAGAGAAAG-GGTATTTTCGTAATTATGGTATAAGGG
14646802 C
130 C
* * * *** *
14646803 ATAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGGAAAAGTCGTTTTGGTATTTT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
* * * * * * *
14646868 CTTA-TAGGCTTCTTTAAT-AATGATTATAAGAGAAAGGGTATTTTAGTAATTCTGGTATGAA-G
66 CTTAGGA-GATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTAT-AAGG
14646930 GC
129 GC
* * * * * * * **
14646932 TTAAAAGTCAGTTTGATCACATGTCAATTTTTTATCATATAATGAAAATGGTATTTTCATAATTT
1 ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
* * * * *
14646997 CTTAGGAGTTTATTTAGTAAATAGTCATAA-A-AAAGGGTTATAATTTTGTAATTATGGTATAAA
66 CTTAGGAGATTATTTAGTAAATAATTATAAGAGAAAGGG-TAT--TTTCGTAATTATGGTATAAG
*
14647060 GAC
128 GGC
* * * * * *
14647063 ATAATAGTCAA-TTGCACAACATGTCCATGTCTTATTATATAATGAAAATGGTATTTTGGTAATT
1 ATAATAGTCAATTTG-ACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATT
* * * ** * * *
14647127 TTTTAGGAGATTATATGGTAAATAATTATAAGAG-AAGGGATATTTTTATAATTATGGTTTGATG
65 TCTTAGGAGATTATTTAGTAAATAATTATAAGAGAAAGGG-TATTTTCGTAATTATGGTATAAGG
14647191 GC
129 GC
* ** *
14647193 ATAATAATCCCTTTCG-CCACATGTTAATTTCTTATCATATAATG
1 ATAATAGTCAATTT-GACCACATGTCAATTTCTTATCATATAATG
14647237 TTATGAAGGC
Statistics
Matches: 764, Mismatches: 159, Indels: 60
0.78 0.16 0.06
Matches are distributed among these distances:
127 32 0.04
128 67 0.09
129 174 0.23
130 236 0.31
131 193 0.25
132 62 0.08
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (130 bp):
ATAATAGTCAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGAATTTTGGTAATTT
CTTAGGAGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCGTAATTATGGTATAAGGGC
Found at i:14647151 original size:390 final size:386
Alignment explanation
Indices: 14646154--14647236 Score: 1094
Period size: 390 Copynumber: 2.8 Consensus size: 386
14646144 TTATGAGGAA
* * * * * * * *
14646154 ATAATAGTCCATTTGGCTACATTTCAATTTCTTATCATATAATGGGAAT-GTCATTTGCA-AATT
1 ATAAAAGTCAATTTGACCACATGTCAATTTTTTATCATATAATGGAAATGGT-ATTTTCATAATT
* * * *
14646217 TCCTAGGCGATTATTTTAGTAAATAATTATAAGAGAAAGGGTAT-TTTCGTTATTACGGTATAAG
65 TCATAGGAGATTA-TTTAGTAAATAATTATAAGA-AAAGGGTATATTTTGTAATTACGGTATAAG
* * * **
14646281 GGCATAATAGTTAATTTGGC-C-ATATGTCAATTTCTTATCATATAATGGAAATGAAATTTTGGT
128 GACATAATAGTCAA-TT-GCACAATATGTCAATTTCTTATTATATAATGGAAATGGTATTTTGGT
* * ** * * * *
14646344 AATTTCTTAGGGGATTATTTAGTAAATAAAAAGAAGAAAAGGGGTATTTTCATAATTATGATATA
191 AATTTATTAGGAGATTATTTAGTAAATAATTATAAGAGAA-GGGTATTTTCATAATTATGGTATG
* * * * *
14646409 AGGGCATAATAGTCTATTTGACCATATTTCAATTTCATATTATATAATGGAAAAAAATGTTTTAG
255 AGGGCATAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGG-AAAAAATGTTTTAG
* *
14646474 TAATTTCTTGAAGGCTAATTTAGTAAATAATTATAAAAAGGGTATTTTTGTAATTATAGTATAAA
319 TAATTTCTTGAAGGCTAATTTAATAAATAATTATAAAAAGGGTATTTTAGTAATTATAGTATAAA
14646539 GAC
384 GAC
* * * * * *
14646542 ATAATAGTCAATTTTACCATATGTCTATTTCTTT-TCATATAATGGGAAA-GGAATTTTCGTAAT
1 ATAAAAGTCAATTTGACCACATGTCAATTT-TTTATCATATAAT-GGAAATGGTATTTTCATAAT
** * * * *
14646605 TTCATAATAGATTATTTAGTAAATAATTATAAGAGATGGGATATATTTTCATAATTACGGTATGA
64 TTCATAGGAGATTATTTAGTAAATAATTATAAGAAAAGGG-TATATTTT-GTAATTACGGTATAA
* * ** * **
14646670 GGATATAATAATCAATTTTACAATATGTCAATTTCTTA-TATATAATGGAAAGGGTATTTTCATA
127 GGACATAATAGTCAATTGCACAATATGTCAATTTCTTATTATATAATGGAAATGGTATTTTGGTA
* * *
14646734 ATTTAGTAGGAGATTATTTAATAAATAATTATAAGAGAAGTGGTATTTTCATAGTTATGGTATGA
192 ATTTATTAGGAGATTATTTAGTAAATAATTATAAGAGAAG-GGTATTTTCATAATTATGGTATGA
* *
14646799 GGGCATAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGG-AAAAGTCGTTTTGGT
256 GGGCATAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGGAAAAAAT-GTTTTAGT
* ** * * *
14646863 ATTTTCTT-ATAGGCTTCTTTAAT-AATGATTATAAGAGAAAGGGTATTTTAGTAATTCTGGTAT
320 AATTTCTTGA-AGGCTAATTTAATAAATAATTAT-A-A-AAAGGGTATTTTAGTAATTATAGTAT
* *
14646926 GAAGGC
381 AAAGAC
* * * *
14646932 TTAAAAGTCAGTTTGATCACATGTCAATTTTTTATCATATAATGAAAATGGTATTTTCATAATTT
1 ATAAAAGTCAATTTGACCACATGTCAATTTTTTATCATATAATGGAAATGGTATTTTCATAATTT
* * * * * *
14646997 CTTAGGAGTTTATTTAGTAAATAGTCATAA-AAAAGGGTTATAATTTTGTAATTATGGTATAAAG
66 CATAGGAGATTATTTAGTAAATAATTATAAGAAAAGGG-TAT-ATTTTGTAATTACGGTATAAGG
* * * *
14647061 ACATAATAGTCAATTGCACAACATGTCCATGTCTTATTATATAATGAAAATGGTATTTTGGTAAT
129 ACATAATAGTCAATTGCACAATATGTCAATTTCTTATTATATAATGGAAATGGTATTTTGGTAAT
* * * * * *
14647126 TTTTTAGGAGATTATATGGTAAATAATTATAAGAGAAGGGATATTTTTATAATTATGGTTTGATG
194 TTATTAGGAGATTATTTAGTAAATAATTATAAGAGAAGGG-TATTTTCATAATTATGGTATGAGG
* * * *
14647191 GCATAATAATCCCTTTCG-CCACATGTTAATTTCTTATCATATAATG
258 GCATAATAGTCCATTT-GACCACATCTCAATTTCTTATCATATAATG
14647237 TTATGAAGGC
Statistics
Matches: 565, Mismatches: 109, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
387 18 0.03
388 86 0.15
389 202 0.36
390 258 0.46
391 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (386 bp):
ATAAAAGTCAATTTGACCACATGTCAATTTTTTATCATATAATGGAAATGGTATTTTCATAATTT
CATAGGAGATTATTTAGTAAATAATTATAAGAAAAGGGTATATTTTGTAATTACGGTATAAGGAC
ATAATAGTCAATTGCACAATATGTCAATTTCTTATTATATAATGGAAATGGTATTTTGGTAATTT
ATTAGGAGATTATTTAGTAAATAATTATAAGAGAAGGGTATTTTCATAATTATGGTATGAGGGCA
TAATAGTCCATTTGACCACATCTCAATTTCTTATCATATAATGGAAAAAATGTTTTAGTAATTTC
TTGAAGGCTAATTTAATAAATAATTATAAAAAGGGTATTTTAGTAATTATAGTATAAAGAC
Found at i:14647224 original size:519 final size:520
Alignment explanation
Indices: 14646106--14647236 Score: 1179
Period size: 519 Copynumber: 2.2 Consensus size: 520
14646096 GATTTTTTAA
* * * * * * * * * *
14646106 TAAATAATTATAACAG-ATGTAT-TATTTTCATAGTTATGTTATGAGGAAATAATAGTCCATTTG
1 TAAATAATTATAAGAGAAGGGATATATTTTCATAATTACGGTATGAGGACATAATAATCAATTTC
* * * * * * *
14646169 GCTACATTTCAATTTCTTATCATATAATGGGAATGTCATTTGCAAATTTCCTAGGCGATTATTTT
66 ACAACATGTCAATTTCTTATCATATAATGGAAAGGTCATTTGCAAATTTACTAGGAGATTATTTT
* * *
14646234 AGTAAATAATTATAAGAGAAAGGGTATTTTCGTTATTACGGTATAAGGGCATAATAGTTAATTTG
131 AATAAATAATTATAAGAGAAAGGGTATTTTCGATATTACGGTATAAGGGCATAATAGTCAATTTG
* * * * *
14646299 GCCATATGTCAATTTCTTATCATATAATGGAAATGAAATTTTGGTAATTTCTTAGGGGATTATTT
196 ACCACATCTCAATTTCTTATCATATAATGGAAAAGAAATTTTGGTAATTTCTTAGAGGATTATTT
* *
14646364 AGTAAATAAAAAGAAGAAAAGGGGTATTTTCATAATTATGATATAAGGGCATAATAGTCTATTTG
261 AATAAATAAAAAGAAGAAAAGGGGTATTTTCATAATTATGATATAAGGGCATAAAAGTCTATTTG
* * * *
14646429 ACCATATTTCAATTTCATATTATATAATGGAAAAAAATGTTTTAGTAATTTCTTGAAGGCTAATT
326 ACCACATGTCAATTTCATATCATATAATGGAAAAAAATATTTTAGTAATTTCTTGAAGGCTAATT
* **
14646494 TAGTAAATAATTATAAAAAGGGTATTTTTGTAATTATAGTATAAAGACATAATAGTCAATTTTAC
391 TAGTAAATAATCATAAAAAGGGTATTTTTGTAATTATAGTATAAAGACATAATAGTCAATTGCAC
* * * * * * *
14646559 CATATGTCTATTTCTTTTCATATAATGGGAAAGGAATTTTCGTAATTTCATAATAGATTATTTAG
456 AACATGTCCATGTCTTTTCATATAATGGAAAAGGAATTTTCGTAATTTCATAAGAGATTATATAG
* * *
14646624 TAAATAATTATAAGAGATGGGATATATTTTCATAATTACGGTATGAGGATATAATAATCAATTTT
1 TAAATAATTATAAGAGAAGGGATATATTTTCATAATTACGGTATGAGGACATAATAATCAATTTC
* * *
14646689 ACAATATGTCAATTTCTTAT-ATATAATGGAAAGGGT-ATTTTCATAATTTAGTAGGAGATTA-T
66 ACAACATGTCAATTTCTTATCATATAATGGAAA-GGTCATTTGCA-AATTTACTAGGAGATTATT
* * *
14646751 TTAATAAATAATTATAAGAG-AAGTGGTATTTTC-ATAGTTATGGTATGAGGGCATAATAGTCCA
129 TTAATAAATAATTATAAGAGAAAG-GGTATTTTCGATA-TTACGGTATAAGGGCATAATAGTCAA
*** * * *
14646814 TTTGACCACATCTCAATTTCTTATCATATAATGGAAAAGTCGTTTTGGTATTTTCTTATAGGCTT
192 TTTGACCACATCTCAATTTCTTATCATATAATGGAAAAGAAATTTTGGTAATTTCTTAGAGGATT
* * * * * *
14646879 CTTTAATAATGATTATAAG-AG-AAA-GGGTATTTT-AGTAATTCTGGTATGAA-GGCTTAAAAG
257 ATTTAATAA--ATAAAAAGAAGAAAAGGGGTATTTTCA-TAATTATGATAT-AAGGGCATAAAAG
* ** ***
14646939 TC-AGTTTGATCACATGTCAATTTTTTATCATATAAT-GAAAATGGTATTTTCA-TAATTTCTT-
318 TCTA-TTTGACCACATGTCAATTTCATATCATATAATGGAAAAAAATATTTT-AGTAATTTCTTG
* * * * *
14647000 AGGAGTTTATTTAGTAAATAGTCATAAAAAAGGGTTATAATTTTGTAATTATGGTATAAAGACAT
381 AAG-GCTAATTTAGTAAATAATCAT-AAAAAGGG-TAT--TTTTGTAATTATAGTATAAAGACAT
* *
14647065 AATAGTCAATTGCACAACATGTCCATGTCTTATT-ATATAAT-GAAAATGGTATTTTGGTAATTT
441 AATAGTCAATTGCACAACATGTCCATGTCTT-TTCATATAATGGAAAA-GGAATTTTCGTAATTT
** * *
14647128 TTTAGGAGATTATATGG
504 CATAAGAGATTATATAG
* * **
14647145 TAAATAATTATAAGAGAAGGGATAT-TTTT-ATAATTATGGTTTGATGG-CATAATAATCCCTTT
1 TAAATAATTATAAGAGAAGGGATATATTTTCATAATTACGGTATGA-GGACATAATAATCAATTT
* * *
14647207 CGCCACATGTTAATTTCTTATCATATAATG
65 CACAACATGTCAATTTCTTATCATATAATG
14647237 TTATGAAGGC
Statistics
Matches: 504, Mismatches: 88, Indels: 40
0.80 0.14 0.06
Matches are distributed among these distances:
516 2 0.00
517 38 0.08
518 84 0.17
519 181 0.36
520 86 0.17
521 111 0.22
522 2 0.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (520 bp):
TAAATAATTATAAGAGAAGGGATATATTTTCATAATTACGGTATGAGGACATAATAATCAATTTC
ACAACATGTCAATTTCTTATCATATAATGGAAAGGTCATTTGCAAATTTACTAGGAGATTATTTT
AATAAATAATTATAAGAGAAAGGGTATTTTCGATATTACGGTATAAGGGCATAATAGTCAATTTG
ACCACATCTCAATTTCTTATCATATAATGGAAAAGAAATTTTGGTAATTTCTTAGAGGATTATTT
AATAAATAAAAAGAAGAAAAGGGGTATTTTCATAATTATGATATAAGGGCATAAAAGTCTATTTG
ACCACATGTCAATTTCATATCATATAATGGAAAAAAATATTTTAGTAATTTCTTGAAGGCTAATT
TAGTAAATAATCATAAAAAGGGTATTTTTGTAATTATAGTATAAAGACATAATAGTCAATTGCAC
AACATGTCCATGTCTTTTCATATAATGGAAAAGGAATTTTCGTAATTTCATAAGAGATTATATAG
Found at i:14648005 original size:281 final size:281
Alignment explanation
Indices: 14647480--14648200 Score: 962
Period size: 281 Copynumber: 2.6 Consensus size: 281
14647470 GAGAAGGAAA
* * *
14647480 ATTTTCATAATTATCATATGAGGGCATAATAGTTAATTTAG-CCTCATGTCTATTTCTTATCATA
1 ATTTTCATAATTATCGTATGAGGGCATAATAGTCAATTTGGTCC-CATGTCTATTTCTTATC--A
* * *
14647544 TAATGGAAAAGGCTTTTTGATATTTTCATGAGGGA-TTTTTAAGTAAATAATTATAAGAGAATAG
63 TAATGGAAAAGGATTTTTGATAATTTCATAAGGGATTTTTTAA-TAAATAATTATAAGAGAATAG
* * *
14647608 GTATTTTCATAA-ATATGGTATGAGGACATAATGGTCATTTTTGTAATTATTTAATAAATAATTA
127 GTATTTTCATAATATATGGTATAAGGACATAATAGTCATTTTTATAATTATTTAATAAATAATTA
* * * * * *
14647672 TAAGAGATGTGGTATTTTCGTGGTTATGTTATAAGGGAATATTAGCCTATTTGGCTACATGTCAA
192 TAAGAAATGTGGCATTTTCGTAGTTATGTTATAAGAGAACAATAGCCTATTTGGCTACATGTCAA
14647737 TTTCTTATCATATAATAGAAATGTC
257 TTTCTTATCATATAATAGAAATGTC
* *
14647762 ATTTTCATAAAATATCGTATGAGGGCATAATAGTCAATTTGGTCCCATGTTTATTTCTTATCATA
1 ATTTTCAT-AATTATCGTATGAGGGCATAATAGTCAATTTGGTCCCATGTCTATTTCTTATCATA
*
14647827 ATGGAAAAGGATTTTTGATAATTTCATAAGGGATTTTTTAATAAATAATTAGAAGAGAATAGGTA
65 ATGGAAAAGGATTTTTGATAATTTCATAAGGGATTTTTTAATAAATAATTATAAGAGAATAGGTA
14647892 TTTTCATAATA-ATGGTATAAAGG-CATAATAGTCATTTTTATAATTATTTAATAAATAATTATA
130 TTTTCATAATATATGGTAT-AAGGACATAATAGTCATTTTTATAATTATTTAATAAATAATTATA
* *
14647955 AGAAATGTGGCATTTTTGTAGTTATGTTATAAGAGAACAATAGTCTATTTGGCTACATGTCAATT
194 AGAAATGTGGCATTTTCGTAGTTATGTTATAAGAGAACAATAGCCTATTTGGCTACATGTCAATT
*
14648020 TCTTATCATATAATGGAAATGTC
259 TCTTATCATATAATAGAAATGTC
** * *
14648043 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGT--CATGTCAATTTCTTAGT-ATA
1 ATTTTCATAATTATCGTATGAGGGCATAATAGTCAATTTGGTCCCATGTCTATTTCTTA-TCAT-
* * *
14648105 GAATGG-AAAGGAAATTTTTG-TAATTTC-TTAGTGGATTATTTAATAAATAACTATAAGAGAAT
64 -AATGGAAAAGG--ATTTTTGATAATTTCATAAG-GGATTTTTTAATAAATAATTATAAGAGAAT
* * * *
14648167 GGGTATTTTCATAAT-TATGTTATGAGGTCATAAT
125 AGGTATTTTCATAATATATGGTATAAGGACATAAT
14648201 GATCGATTTG
Statistics
Matches: 392, Mismatches: 34, Indels: 28
0.86 0.07 0.06
Matches are distributed among these distances:
278 15 0.04
279 12 0.03
280 97 0.25
281 202 0.52
282 19 0.05
283 45 0.11
284 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (281 bp):
ATTTTCATAATTATCGTATGAGGGCATAATAGTCAATTTGGTCCCATGTCTATTTCTTATCATAA
TGGAAAAGGATTTTTGATAATTTCATAAGGGATTTTTTAATAAATAATTATAAGAGAATAGGTAT
TTTCATAATATATGGTATAAGGACATAATAGTCATTTTTATAATTATTTAATAAATAATTATAAG
AAATGTGGCATTTTCGTAGTTATGTTATAAGAGAACAATAGCCTATTTGGCTACATGTCAATTTC
TTATCATATAATAGAAATGTC
Found at i:14648122 original size:75 final size:77
Alignment explanation
Indices: 14647966--14648129 Score: 199
Period size: 75 Copynumber: 2.2 Consensus size: 77
14647956 GAAATGTGGC
* * * *
14647966 ATTTTTGTAGTTATGTTATAAGAGAACAATAGTCTATTTGGCTACATGTCAATTTCTTATCATAT
1 ATTTTTGTAATTATGGTATAAGAGAACAATAGTCAATTTGGCTACATGTCAATTTCTTATCATAG
* **
14648031 AATGGAAATGTC
66 AATGGAAAGGAA
* * * *
14648043 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGG-T-CATGTCAATTTCTTAGT-ATA
1 ATTTTTGTAATTATGGTATAAGAGAACAATAGTCAATTTGGCTACATGTCAATTTCTTA-TCATA
14648105 GAATGGAAAGGAA
65 GAATGGAAAGGAA
14648118 ATTTTTGTAATT
1 ATTTTTGTAATT
14648130 TCTTAGTGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
75 39 0.52
76 2 0.03
77 34 0.45
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.41
Consensus pattern (77 bp):
ATTTTTGTAATTATGGTATAAGAGAACAATAGTCAATTTGGCTACATGTCAATTTCTTATCATAG
AATGGAAAGGAA
Found at i:14648523 original size:261 final size:259
Alignment explanation
Indices: 14648050--14649929 Score: 1070
Period size: 259 Copynumber: 7.3 Consensus size: 259
14648040 GTCATTTTTG
* ** * *
14648050 TAATTATGGTATGAGGGCATAATAGTCAATTTGGTCA--TGTCAATTTCTTAGT-ATAGAATGGA
1 TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTT-TTCATATAATGGA
* * * * * * * *
14648112 AAGGAAATTTTTGTAATTTC-TTAGTGGATTATTTAA-TAAATAACTATAAGAGAATGGGTATTT
65 AAAGACATTTTAGTAATTTCATAAG-AGATT-CTTAAGTAAATAATTATAAGAGAATGTGTATTT
** * * * * * * ** *
14648175 TCATAATTATGTTAT-GAGGTCATAAT-GATCGATTTGACCACATGACAAATGTCTTATCATATA
128 TTGTAATAATGGTATAAAGG-CATAATAG-TCAATTGGACAACATTTC-AATTTCTTATCATATA
* * * * *
14648238 ATTGAAAAAGTGTTTTAATAATTTCTTAAGG-GCTTCTTTGGTAAATAATTATAAAAGAAGGGAT
190 A-TGAAAAAGTATTTTAGTAATTTCTT-AGGAGATTATTTAGTAAATAATTATAAAAGAAGGGAT
**
14648302 ATTTTGG
253 ATTTTCA
* * *
14648309 TAATTTTGGTATGAAGGCATAATAATCAATTTGACCACGTTTCAATTT-TTTATCATATAATGGA
1 TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTTT-TCATATAATGGA
* * *
14648373 AACA-ATATTTTTGTAATTTCATAAGAGATTGTTAAGTAAATAATTATAAGAGAACTGT-TATAT
65 AA-AGACATTTTAGTAATTTCATAAGAGATTCTTAAGTAAATAATTATAAGAGAA-TGTGTAT-T
*
14648436 TTTGGTAATAATGGTATGAAGGCATAATAGTCAATTGGACAACATTT-AATTTCTTATCATATAA
127 TTT-GTAATAATGGTATAAAGGCATAATAGTCAATTGGACAACATTTCAATTTCTTATCATATAA
* * * *
14648500 TGGAAATAGAATTTTGGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAACA-AAGGGTTA
191 T-GAAAAAGTATTTTAGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAA-AGAAGGGATA
*
14648564 TATTCA
254 TTTTCA
* * ** *
14648570 TAAATATGGTATG-AGGACATAATAGTCCATTTGATTACGTGTCAATTTCTTTTCATATAATTGA
1 TAATTATGGTATGAAGG-CATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAATGGA
* * * * * *
14648634 AAAGGCATTTTAGTAATTTCTTAAGTGCTTCTTTAGTAAATAGTTATAAGAGAATGTGTATTTTT
65 AAAGACATTTTAGTAATTTCATAAGAGATTCTTAAGTAAATAATTATAAGAGAATGTGTATTTTT
** * * * *
14648699 GTAATTCTGGTATAAAGGCATAATAGTCAATTTGACCACATTTCAATTTCTTATTATAAAATGAA
130 GTAATAATGGTATAAAGGCATAATAGTCAATTGGACAACATTTCAATTTCTTATCATATAATGAA
* * *
14648764 AAAGGGTATTTTTGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAAAGAAAGGATATATT
195 AAA--GTATTTTAGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAAAGAAGGGATAT-TT
14648829 TCTA
257 TC-A
* * * * * * *
14648833 TAATTATGGTATGAGGGCATAATAGTCAATTGGACAATGTGTCCATTTCTTATCATACAAT-G-A
1 TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAATGGAA
** * * * * * * **
14648896 GGGGCATTTT-GATAATTTCTTAGGGGATT-ATATGGCCAATAATTATAAGAGAA----TA-TTT
66 AAGACATTTTAG-TAATTTCATAAGAGATTCTTA-AGTAAATAATTATAAGAGAATGTGTATTTT
* * * * ** * * * *
14648954 TGAAAATTATGGTATGAAGGTATAATAGTTTATTTGACTACATGTCAATTTCTTATCATGTAATA
129 TG-TAATAATGGTATAAAGGCATAATAGTCAATTGGACAACATTTCAATTTCTTATCATATAAT-
*** * * * * * * *
14649019 GAATTTGCATTTTGATTATTTTATT-GGTGACTATTTAGTAAA-AATTA-AAAGAGAAATGG-TA
192 GAAAAAGTATTTT-AGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAA-AG-AAGGGATA
*
14649080 TTTTCG
254 TTTTCA
* * * * ** * * * *
14649086 TAATTATTGTATG-AGAGTATAATAGTCAATTCGGCCAAATATTAACTTCTTATCATATAATGGG
1 TAATTATGGTATGAAG-GCATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAAT-GG
* * * * * *
14649150 AAAAG-TATTTTAGTAATTTCATAAGAGATTATTTAGTAAATATTTATAATAGAATGAGTATTTT
64 AAAAGACATTTTAGTAATTTCATAAGAGATTCTTAAGTAAATAATTATAAGAGAATGTGTATTTT
** ** * * * * * * * * * * *
14649214 CATAACT-ATACTATGATGCCATAATAGTCTATTTGCCTACGTGTCAATCTCTTATCATATATTG
129 TGTAA-TAATGGTATAAAGGCATAATAGTCAATTGGACAACATTTCAATTTCTTATCATATAATG
* * * * **
14649278 GAAAGGATATTCT-GATAATTT-TATAAGAGATTATTTAGTAAATAATTATATGAGAAAGGG-TA
193 AAAAAG-TATTTTAG-TAATTTCT-TAGGAGATTATTTAGTAAATAATTATAAAAG-AAGGGATA
14649340 TTTTCA
254 TTTTCA
** * * * * * ** *
14649346 TAATTATCATGTGATGGCATAATAGTCAACTTG-CCCCATGTCAATTTCTCATCATATATTGGAA
1 TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAATGGAA
* * * * * *
14649410 AGGGCATTTT-GATAATTTCATTAGAGATTATTTAA-TAAATAATTATAAGTGAATGGGTATTTT
66 AAGACATTTTAG-TAATTTCATAAGAGATT-CTTAAGTAAATAATTATAAGAGAATGTGTATTTT
** * * * ** * * * *
14649473 CATAATTATGGTAT-GAGGTTATAATAGTC-ATTTTAGCCACATGTCAATTTTTTATCATGTAA-
129 TGTAATAATGGTATAAAGG-CATAATAGTCAATTGGA-CAACATTTCAATTTCTTATCATATAAT
* * * * * ** *
14649535 CAAAAATGGCATTTTGGTAATTT-TATA-AACGATTATTTGGTAAATAATTATAAAAGATTGGCT
192 GAAAAA--GTATTTTAGTAATTTCT-TAGGA-GATTATTTAGTAAATAATTATAAAAGAAGGGAT
* *
14649598 CTTTTCT
253 ATTTTCA
* * * * * *
14649605 TAATTATGATAT-AAGGTCATAATAGTCAATTT-AGTCACATGTTAACTTCTTATT-ATAAAATG
1 TAATTATGGTATGAAGG-CATAATAGTCAATTTGA-CCACGTGTCAATTTCTT-TTCATATAATG
* * * * *
14649667 AAAAAGATATTTT-GATAATTTCATAA-AGGATTATTTAGTAAATAATTATAAGACAA---GTAT
63 GAAAAGACATTTTAG-TAATTTCATAAGA-GATTCTTAAGTAAATAATTATAAGAGAATGTGTAT
* * * * * * *
14649727 TTTTGTAATTATGGTATGAGGGCATAATAATTCATTTGG-CTACATGTCAATTTCTTATCATATA
126 TTTTGTAATAATGGTATAAAGGCATAAT-AGTCAATTGGACAACATTTCAATTTCTTATCATATA
* * * * * * *
14649791 TTGGAAAAGGTATTTTGGTAATTTCATAGAAGATTATTTAGTAAATAATTATAAGAGAAGGGGTA
190 AT-GAAAAAGTATTTTAGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAAAGAAGGGATA
**
14649856 TTTTTG
254 TTTTCA
* * * ** * * * *
14649862 TGATTATGGTATGAGGGTATAATAGTCAATTTGGTCACGTGTTAATTTCTTCTCATTTAATGAAA
1 TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAATGGAA
14649927 AAG
66 AAG
14649930 TAAATAATTA
Statistics
Matches: 1267, Mismatches: 275, Indels: 160
0.74 0.16 0.09
Matches are distributed among these distances:
252 1 0.00
253 46 0.04
254 7 0.01
255 45 0.04
256 35 0.03
257 204 0.16
258 45 0.04
259 323 0.25
260 152 0.12
261 310 0.24
262 16 0.01
263 77 0.06
264 6 0.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (259 bp):
TAATTATGGTATGAAGGCATAATAGTCAATTTGACCACGTGTCAATTTCTTTTCATATAATGGAA
AAGACATTTTAGTAATTTCATAAGAGATTCTTAAGTAAATAATTATAAGAGAATGTGTATTTTTG
TAATAATGGTATAAAGGCATAATAGTCAATTGGACAACATTTCAATTTCTTATCATATAATGAAA
AAGTATTTTAGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAAAGAAGGGATATTTTCA
Found at i:14649213 original size:516 final size:512
Alignment explanation
Indices: 14648138--14650913 Score: 1359
Period size: 516 Copynumber: 5.4 Consensus size: 512
14648128 TTTCTTAGTG
* * * ** *
14648138 GATTATTTAATAAATAACTATAAGAGAATGGGTATTTTCATAATTATGTTATG-AGGTCATAAT-
1 GATTATTTAGTAAATAATTATAA-AGAATGAGTATTTTTGTAATTATGGTATGAAGG-CATAATA
* * * * ** *
14648201 GATCGATTTGACCACATGACAAATGTCTTATCATATAATTGAAAA-AGTGTTTTAATAATTTCTT
64 G-TC-ATTTG-CCACATGTC-AATTTCTTATCATAT-ATTGAAAAGGGTATTTTTGTAATTTCAT
* * * * ** * *
14648265 AAGG-GCTTCTTTGGTAAATAATTATAAAAG-AAGGGATATTTT-GGTAATTTTGGTATGAAGGC
124 -AGGAGATTATTTAGTAAATAATTATAAGAGAAAGGG-TATTTTCTATAATTATGGTATGAGGGC
* * * * * * ****
14648327 ATAATAATCAATTTG-ACCACGTTTCAATTTTTTATCATATAATGGAAACAATATTTTTG-TAAT
187 ATAATAGTCAA-TTGCA-CA-ATGTCAATTTCTCATCATACAATGGAAAGGGCA-TTTTGATAAT
* * * *** *
14648390 TTCATAAGAGATTGT-TAAGTAAATAATTATAAGAGAACTGTTATATTTTGGTAATAATGGTATG
248 TTCATTAGAGATTATATAA-CAAATAATTATAAGAGAA--G---TATTTTCAAAATTATGGTATG
* * * * * *** * *
14648454 AAGG-CATAATAGTCAATTG-GACAACAT-TTAATTTCTTATCATATAATGGAAATAGAATTTTG
307 -AGGTTATAATAGTCATTTGAG-CCACATGTCAATTTCTTATCATGTAACAAAAATGGCATTTTG
* * * * * * * *
14648516 GTAATTTCT-TAGGA-GATTATTTAGTAAATAATTATAAACA-AAGGGTTATATTCATAAATATG
370 ATAATTT-TATA-AACGACTATTTAGTAAATAATTATAAA-AGAATGGCTATTTTCGTAATTATG
* * * * * ** ** * * * * * *
14648578 GTATGAGGACATAATAGTCCATT-TGATTACGTGTCAATTTCTTTTCATATAATTGAAAAGGCAT
432 ATATAAGGTCATAATAGTCAATTCAG-CCAAATATTAACTTCTTATCATATAATGGAAAA-GTAT
* *
14648642 TTTAGTAATTTCTTAAGT
495 TTTAGTAATTTCATAAGA
* * * * * *
14648660 GCTTCTTTAGTAAATAGTTATAAGAGAATGTGTATTTTTGTAATTCTGGTATAAAGGCATAATAG
1 GATTATTTAGTAAATAATTATAA-AGAATGAGTATTTTTGTAATTATGGTATGAAGGCATAATAG
* * * *
14648725 TCAATTTGACCACATTTCAATTTCTTATTATAAAATGAAAAAGGGTATTTTTGTAATTTCATAGG
65 TC-ATTTG-CCACATGTCAATTTCTTATCATATATTG-AAAAGGGTATTTTTGTAATTTCATAGG
* *
14648790 AGATTATTTAGTAAATAATTATAAAAGAAAGGATATATTTCTATAATTATGGTATGAGGGCATAA
127 AGATTATTTAGTAAATAATTATAAGAGAAAGGGTAT-TTTCTATAATTATGGTATGAGGGCATAA
* * * *
14648855 TAGTCAATTGGACAATGTGTCCATTTCTTATCATACAAT-G-AGGGGCATTTTGATAATTTC-TT
191 TAGTCAATTGCACAA--TGTCAATTTCTCATCATACAATGGAAAGGGCATTTTGATAATTTCATT
* ** * *
14648917 AGGGGATTATATGGCCAATAATTATAAGAGAA-TATTTTGAAAATTATGGTATGAAGG-TATAAT
254 A-GAGATTATATAACAAATAATTATAAGAGAAGTATTTTCAAAATTATGGTATG-AGGTTATAAT
* * * * * * * *
14648980 AGTTTATTTGA-CTACATGTCAATTTCTTATCATGTAATAGAATTTGCATTTTGATTATTTTATT
317 AG-TCATTTGAGCCACATGTCAATTTCTTATCATGTAACAAAAATGGCATTTTGATAATTTTATA
*** *
14649044 GGTGACTATTTAGTAAA-AATTA-AAAGAGAAATGG-TATTTTCGTAATTATTG-TATGAGAGT-
381 AACGACTATTTAGTAAATAATTATAAA-AG-AATGGCTATTTTCGTAATTA-TGATATAAG-GTC
*
14649104 ATAATAGTCAATTCGGCCAAATATTAACTTCTTATCATATAATGGGAAAAGTATTTTAGTAATTT
442 ATAATAGTCAATTCAGCCAAATATTAACTTCTTATCATATAAT-GGAAAAGTATTTTAGTAATTT
14649169 CATAAGA
506 CATAAGA
* ** * ** * *
14649176 GATTATTTAGTAAATATTTATAATAGAATGAGTATTTTCATAACTATACTATGATGCCATAATAG
1 GATTATTTAGTAAATAATTATAA-AGAATGAGTATTTTTGTAATTATGGTATGAAGGCATAATAG
* * * * * * *
14649241 TCTATTTGCCTACGTGTCAATCTCTTATCATATATTGGAAAGGATA-TTCTGATAATTTTATAAG
65 TC-ATTTGCC-ACATGTCAATTTCTTATCATATATTGAAAAGGGTATTTTTG-TAATTTCATAGG
* ** * *
14649305 AGATTATTTAGTAAATAATTATATGAGAAAGGGTATTTTC-ATAATTATCATGTGATGGCATAAT
127 AGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCTATAATTATGGTATGAGGGCATAAT
* * * *
14649369 AGTCAACTTGCCCCATGTCAATTTCTCATCATATATTGGAAAGGGCATTTTGATAATTTCATTAG
192 AGTCAA-TTGCACAATGTCAATTTCTCATCATACAATGGAAAGGGCATTTTGATAATTTCATTAG
* * * *
14649434 AGATTATTTAATAAATAATTATAAGTGAATGGGTATTTTCATAATTATGGTATGAGGTTATAATA
256 AGATTATATAACAAATAATTATAAGAGAA---GTATTTTCAAAATTATGGTATGAGGTTATAATA
* * *
14649499 GTCATTTTAGCCACATGTCAATTTTTTATCATGTAACAAAAATGGCATTTTGGTAATTTTATAAA
318 GTCATTTGAGCCACATGTCAATTTCTTATCATGTAACAAAAATGGCATTTTGATAATTTTATAAA
* * * * *
14649564 CGATTATTTGGTAAATAATTATAAAAGATTGGCTCTTTTCTTAATTATGATATAAGGTCATAATA
383 CGACTATTTAGTAAATAATTATAAAAGAATGGCTATTTTCGTAATTATGATATAAGGTCATAATA
* * * * * * *
14649629 GTCAATTTAGTCACATGTTAACTTCTTATTATAAAATGAAAAAGATATTTT-GATAATTTCATAA
448 GTCAATTCAGCCAAATATTAACTTCTTATCATATAATGGAAAAG-TATTTTAG-TAATTTCATAA
14649693 -A
511 GA
*
14649694 GGATTATTTAGTAAATAATTAT-AAGACA--AGTATTTTTGTAATTATGGTATGAGGGCATAATA
1 -GATTATTTAGTAAATAATTATAAAGA-ATGAGTATTTTTGTAATTATGGTATGAAGGCATAAT-
* * *
14649756 ATTCATTTGGCTACATGTCAATTTCTTATCATATATTGGAAAA-GGTATTTTGGTAATTTCATAG
63 AGTCATTT-GCCACATGTCAATTTCTTATCATATATT-GAAAAGGGTATTTTTGTAATTTCATAG
* * * * *
14649820 AAGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTT-TGTGATTATGGTATGAGGGTATAA
126 GAGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCTATAATTATGGTATGAGGGCATAA
* * ** *
14649884 TAGTCAATTTGGTCAC-GTGTTAATTTCTTC-TCATTTAAT-GAAA----A---AG-TAA----A
191 TAGTCAA-TT-G-CACAATGTCAATTTC-TCATCATACAATGGAAAGGGCATTTTGATAATTTCA
* ** * * *
14649934 -T--A-A-T-TAT-----A-AA--AGAAG-G--GTTATTTTCGTAATTATGATATTAAGGCT-TA
252 TTAGAGATTATATAACAAATAATTATAAGAGAAG-TATTTTCAAAATTATGGTA-TGAGGTTATA
* * * * ** * * *
14649981 ATTGTCAATTTGA-CCTA-ATGTTAATTTCTTATCGTATAATGAAAA-GAGTATTTTCATAATTG
315 ATAGTC-ATTTGAGCC-ACATGTCAATTTCTTATCATGTAACAAAAATG-GCATTTTGATAATTT
* * * * * **
14650043 CATATGA-GAATATTTAGTAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAGG
377 TATA-AACGACTATTTAGTAAATAATTATAAAAGAATGGCTATTTTCGTAATTATGATAT-AAGG
* * ** * * * * ** * *
14650107 T-ATTATAAT-ACATTTGGCCACATGTCAATTTCTTATCATATAACAGAAGAAGCATTTTGGTAA
440 TCATAATAGTCA-ATTCAGCCAAATATTAACTTCTTATCATATAATGGAA-AAGTATTTTAGTAA
** * *
14650170 TTTTGTATGT
503 TTTCATAAGA
* * * ** * *
14650180 GATTATTTAGAAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAGTAA
1 GATTATTTAGTAAATAATTATAA-AGAATGAGTATTTTTGTAATTATGGTATGAAGGCATAAT-A
* * * * * * *** * *
14650245 TTCATTTGGCCACATGTCGATTTCTTATCATATACTGGAAATGGAATTTCACTATTTTTATAGGA
64 GTCATTT-GCCACATGTCAATTTCTTATCATATATTGAAAAGGGTATTTTTGTAATTTCATAGGA
* * * * *
14650310 GATTATTTACTAAATAATTCTGAGAGAAGGGGTATTTTC-ATAATTATGATATGAGGGCATAATA
128 GATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCTATAATTATGGTATGAGGGCATAATA
** * * * * * *
14650374 GTCAATTTGGTCATATGTCAATTTTTTATCATACAAT-GAAAAGGAATTTTGGTAATTTTA-TAG
193 GTCAA-TTGCACA-ATGTCAATTTCTCATCATACAATGGAAAGGGCATTTTGATAATTTCATTA-
* * * ** * *
14650437 GAAATAATTTAGTAAATAATTATAAGAGAATGTGTATTTTCATAATTATGGTATAAGAG-TATAA
255 GAGATTATATAACAAATAATTATAAGAGAA---GTATTTTCAAAATTATGGTATGAG-GTTATAA
* * * * * * * * * *
14650501 TAGTAAACTTG-GTCATATGTCAATTTCTTATCATATAATGAAAGA-GGTA-ATTGCATAATTTC
316 TAGT-CATTTGAGCCACATGTCAATTTCTTATCATGTAA-CAAAAATGGCATTTTG-ATAATTTT
* * * * * * * **
14650563 ATAGAA-GATTATTCAGCAAATAATCATAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGA
378 ATA-AACGACTATTTAGTAAATAATTATAAAAGAATGGCTATTTTCGTAATTATGATATAAGGTC
* ** * * * * * **
14650627 ATAATAATCAATTGGGCCACATTTTGGTAATTTTGTAGGAGATAATTACTAAATAATTATAAAAG
442 ATAATAGTCAATTCAGCCA-AATAT--TAA-CTTCT------T-A-T-C-ATATAA-T-GGAAA-
* * * *
14650692 TATGGGTATTTTTGTAATTTTAGAGGA
490 -A---GTATTTTAGTAATTTCATAAGA
* * * ** * *
14650719 TATTATTTAATAAATAGTTATAAGAGAA-GAGGTATTTTAATAATTATGGTATGAGGGCATTATA
1 GATTATTTAGTAAATAATTATAA-AGAATGA-GTATTTTTGTAATTATGGTATGAAGGCATAATA
* * * * *
14650783 ATCCATTTGGCCAAATGTCAATTTCTTATCATATAATGGAAAA-AGCATTTTTGTAATTTTCATA
64 GT-CATTT-GCCACATGTCAATTTCTTATCATAT-ATTGAAAAGGGTATTTTTGTAA-TTTCATA
* * * *
14650847 GGTGATTATTTAGAAAATAATTATAAGTGAATGGGTATTTT-TATAATTATGGTATGAGGGCATA
125 GGAGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCTATAATTATGGTATGAGGGCATA
14650911 ATA
190 ATA
14650914 CTCCATTTGA
Statistics
Matches: 1759, Mismatches: 354, Indels: 264
0.74 0.15 0.11
Matches are distributed among these distances:
484 3 0.00
485 173 0.10
486 24 0.01
487 9 0.01
488 161 0.09
489 1 0.00
490 4 0.00
492 3 0.00
493 1 0.00
495 1 0.00
496 3 0.00
498 2 0.00
499 1 0.00
500 3 0.00
501 1 0.00
503 2 0.00
504 2 0.00
506 2 0.00
508 3 0.00
509 1 0.00
511 1 0.00
512 21 0.01
513 27 0.02
514 59 0.03
515 60 0.03
516 317 0.18
517 107 0.06
518 117 0.07
519 219 0.12
520 14 0.01
521 26 0.01
522 136 0.08
523 22 0.01
524 45 0.03
529 1 0.00
530 1 0.00
531 1 0.00
532 1 0.00
533 5 0.00
534 1 0.00
535 2 0.00
536 1 0.00
538 3 0.00
539 103 0.06
540 69 0.04
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (512 bp):
GATTATTTAGTAAATAATTATAAAGAATGAGTATTTTTGTAATTATGGTATGAAGGCATAATAGT
CATTTGCCACATGTCAATTTCTTATCATATATTGAAAAGGGTATTTTTGTAATTTCATAGGAGAT
TATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCTATAATTATGGTATGAGGGCATAATAGTC
AATTGCACAATGTCAATTTCTCATCATACAATGGAAAGGGCATTTTGATAATTTCATTAGAGATT
ATATAACAAATAATTATAAGAGAAGTATTTTCAAAATTATGGTATGAGGTTATAATAGTCATTTG
AGCCACATGTCAATTTCTTATCATGTAACAAAAATGGCATTTTGATAATTTTATAAACGACTATT
TAGTAAATAATTATAAAAGAATGGCTATTTTCGTAATTATGATATAAGGTCATAATAGTCAATTC
AGCCAAATATTAACTTCTTATCATATAATGGAAAAGTATTTTAGTAATTTCATAAGA
Found at i:14649729 original size:646 final size:639
Alignment explanation
Indices: 14648065--14651151 Score: 1765
Period size: 646 Copynumber: 4.8 Consensus size: 639
14648055 ATGGTATGAG
** * *
14648065 GGCATAATAGTCAATTTG-GTCATGTCAATTTCTTAGTATAGAATGGAAAGGAAATTTTTGTAAT
1 GGCATAATAGTCAATTTGCCACATGTCAATTTCTTA-TATAAAATGGAAAGGGAATTTTTGTAAT
* * *
14648129 TTC-TTAGTGGATTATTTAATAAATAACTATAAGAGAATGGGTATTTTCATAATTATGTTATGAG
65 TTCATTAG-AGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAG
* * * *
14648193 GTCATAAT-GATCGATTTGA-CCACATGACAAATGTCTTATCATATAATTGAAAAAGTG--TTTT
129 GTCATAATAG-TC-ATTTTAGCCACATGTC-AATTTCTTATCAT-TAA--CAAAAAG-GCATTTT
* * * * *
14648254 AATAATTTCTTAAGGGCTTCTTTGGTAAATAATTATAAAAGAAGGGATATTTTGGTAATTTTGGT
187 GATAATTTCTTAAGGGATTATTTGGTAAATAATTATAAAAG-A-GGATATTTTGATAATTATGGT
* * * * *
14648319 ATGAAGG-CATAATAATCAATTTGAC-CACGTTTCAATTTTTTATCATATAATGGAAACA-ATAT
250 ATGAAGGTCATAATAGTCAATTTGACACATG-TT-AATTTCTTATCATATAATAGAAAAAGATA-
* * * *
14648381 TTTTG-TAATTTCATAAGAGATTGTTAAGTAAATAATTATAAGAGAACTGTTATATTTTGGTAAT
312 TTTTGATAATTTCATAAGAGATTATTTAGTAAATAATTATAAGA-AAATG---TATTTTCGTAAT
* *
14648445 AATGGTATGA-AGGCATAATAGTCAATTGGACAACATTTAATTTCTTATCATATAATGGAAATAG
373 TATGGTATGAGA-GCATAATAGTCAATTGGCCAA-ATTTAATTTCTTATCATATAATGGAAA-AG
* * * * *
14648509 AATTTTGGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAAACAAAGGGTTATATTCATAAA
435 TATTTTGGTAATTTCATAAGAGATTATTTAGTAAATAATTATAAAGAAAGGG-TATTTTCATAAA
** * * *
14648574 TATGGTATGAGGACATAATAGTCCATTTGATTACGTGTCAATTTCTTTTCATATAATTGAAAAGG
499 TATACTATGAGGACATAATAGTCCATTTGACTACGTGTCAATCTCTTATCATATAATTGAAAAGG
* * * * * * **
14648639 CATTTTAGTAATTTCTTAAGTGCTTCTTTAGTAAATAGTTATAAGAGAATGTGTATTTTTGTAAT
564 CATTTTAGTAATTTCTTAAGAGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAAT
* **
14648704 TCTGGTATAAA
629 TATCATATAAA
* * *
14648715 GGCATAATAGTCAATTTGACCACATTTCAATTTCTTATTATAAAATGAAAAAGGGTATTTTTGTA
1 GGCATAATAGTCAATTTG-CCACATGTCAATTTCTTA-TATAAAATG-GAAAGGGAATTTTTGTA
* * * *
14648780 ATTTCA-TAGGAGATTATTTAGTAAATAATTATAAAAGAAAGGATATATTTCTATAATTATGGTA
63 ATTTCATTA-GAGATTATTTAATAAATAATTATAAGAGAATGGGTAT-TTTC-ATAATTATGGTA
* * * * * **
14648844 TGAGGGCATAATAGTCA-ATTGGACA-ATGTGTCCATTTCTTATCA-T-ACAATGAGGGGCATTT
125 TGAGGTCATAATAGTCATTTTAGCCACA--TGTCAATTTCTTATCATTAACAA--AAAGGCATTT
* * ** * *
14648905 TGATAATTTCTTAGGGGATTATATGGCCAATAATTAT--AAGAGAATATTTTGAAAATTATGGTA
186 TGATAATTTCTTAAGGGATTATTTGGTAAATAATTATAAAAGAGGATATTTTGATAATTATGGTA
** * * *** *
14648968 TGAAGGT-ATAATAGTTTATTTGACTACATGTCAATTTCTTATCATGTAATAGAATTTG-CATTT
251 TGAAGGTCATAATAGTCAATTTGAC-ACATGTTAATTTCTTATCATATAATAGAAAAAGATATTT
* * ** * * * *
14649031 TGATTATTTTATTGGTGACTATTTAGTAAA-AATTAAAAGAGAAATGGTATTTTCGTAATTATTG
315 TGATAATTTCATAAGAGATTATTTAGTAAATAATTATAAGA-AAAT-GTATTTTCGTAATTATGG
* *
14649095 TATGAGAGTATAATAGTCAATTCGGCCAAATATTAACTTCTTATCATATAATGGGAAAAGTATTT
378 TATGAGAGCATAATAGTCAATT-GGCCAAAT-TTAATTTCTTATCATATAAT-GGAAAAGTATTT
* * * * *
14649160 TAGTAATTTCATAAGAGATTATTTAGTAAATATTTATAATAGAATGAGTATTTTCATAACTATAC
440 TGGTAATTTCATAAGAGATTATTTAGTAAATAATTATAA-AGAAAGGGTATTTTCATAAATATAC
* * * * *
14649225 TATGATGCCATAATAGTCTATTTGCCTACGTGTCAATCTCTTATCATAT-ATTGGAAAGG-ATAT
504 TATGAGGACATAATAGTCCATTTGACTACGTGTCAATCTCTTATCATATAATTGAAAAGGCAT-T
*
14649288 TCT-GATAATTT-TATAAGAGATTATTTAGTAAATAATTATATGAGAAAGGGTATTTTCATAATT
568 T-TAG-TAATTTCT-TAAGAGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATT
* * *
14649351 ATCATGTGAT
630 ATCATATAAA
* * * * * *
14649361 GGCATAATAGTCAACTTGCCCCATGTCAATTTCTCATCATATATTGGAAAGGGCA-TTTTGATAA
1 GGCATAATAGTCAATTTGCCACATGTCAATTTCTTAT-ATAAAATGGAAAGGGAATTTTTG-TAA
*
14649425 TTTCATTAGAGATTATTTAATAAATAATTATAAGTGAATGGGTATTTTCATAATTATGGTATGAG
64 TTTCATTAGAGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAG
* * *
14649490 GTTATAATAGTCATTTTAGCCACATGTCAATTTTTTATCATGTAACAAAAATGGCATTTTGGTAA
129 GTCATAATAGTCATTTTAGCCACATGTCAATTTCTTATCAT-TAACAAAAA-GGCATTTTGATAA
** * * ** *
14649555 TTT-TATAAACGATTATTTGGTAAATAATTATAAAAGATTGGCTCTTTTCTTAATTATGATAT-A
192 TTTCT-TAAGGGATTATTTGGTAAATAATTATAAAAGA--GGATATTTTGATAATTATGGTATGA
* * * *
14649618 AGGTCATAATAGTCAATTTAGTCACATGTTAACTTCTTATTATAAAAT-GAAAAAGATATTTTGA
254 AGGTCATAATAGTCAATTT-GACACATGTTAATTTCTTATCATATAATAGAAAAAGATATTTTGA
* *
14649682 TAATTTCATAA-AGGATTATTTAGTAAATAATTATAAGACAA-GTATTTTTGTAATTATGGTATG
318 TAATTTCATAAGA-GATTATTTAGTAAATAATTATAAGAAAATGTATTTTCGTAATTATGGTATG
* * * * * * *
14649745 AGGGCATAATAATTCATTTGGCTACATGTCAATTTCTTATCATATATTGGAAAAGGTATTTTGGT
382 AGAGCATAAT-AGTCAATTGGCCAAAT-TTAATTTCTTATCATATAATGGAAAA-GTATTTTGGT
* ** * * **
14649810 AATTTCAT-AGAAGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTGATTATGGTAT
444 AATTTCATAAG-AGATTATTTAGTAAATAATTATAA-AGAAAGGGTATTTTCATAAATATACTAT
** * * * *
14649874 GAGGGTATAATAGTCAATTTG-GTCACGTGTTAA----TT-TC-T-T--CT-------CA--TT-
507 GAGGACATAATAGTCCATTTGACT-ACGTGTCAATCTCTTATCATATAATTGAAAAGGCATTTTA
* * * *
14649919 -TAA-----T--GA-A--A--AAGTAAATAATTATAAAAG-AAGGGTTATTTTCGTAATTATGAT
571 GTAATTTCTTAAGAGATTATTTAGTAAATAATTATAAGAGAAAGGG-TATTTTCATAATTATCAT
*
14649970 ATTAA
635 ATAAA
* * * * * * * * **
14649975 GGCTTAATTGTCAATTTGACCTA-ATGTTAATTTCTTATCGTATAATGAAAAGAGTATTTTCATA
1 GGCATAATAGTCAATTTG-CC-ACATGTCAATTTCTTAT-ATAAAATGGAAAGGGAATTTTTGTA
* * * * * * *
14650039 ATTGCA-TATGAGAATATTTAGTAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATG
63 ATTTCATTA-GAGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATG
* * *
14650103 AAGGT-ATTATAATACA-TTTGGCCACATGTCAATTTCTTATCATATAACAGAAGAA-GCATTTT
127 -AGGTCATAATAGT-CATTTTAGCCACATGTCAATTTCTTATCAT-TAACA-AA-AAGGCATTTT
* * * * * * * *
14650165 GGTAATTT-TGTATGTGATTATTTAGAAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGG
187 GATAATTTCT-TAAGGGATTATTTGGTAAATAATTATAA-A-AGAGGATATTTTGATAATTATGG
* * * * ** * * **
14650229 TATAAAGG-CATAGTAATTC-ATTTGGCCACATGTCGATTTCTTATCATATACTGGAAATGGA-A
249 TATGAAGGTCATAAT-AGTCAATTT-GACACATGTTAATTTCTTATCATATAATAGAAAAAGATA
* * * * * * *** *
14650291 -TTTCACTATTTTTATAGGAGATTATTTACTAAATAATTCTGAGAGAAGGGGTATTTTCATAATT
312 TTTTGA-TAATTTCATAAGAGATTATTTAGTAAATAATTAT-A-AGAAAATGTATTTTCGTAATT
* * * * * * * *
14650355 ATGATATGAGGGCATAATAGTCAATTTGGTCATATGTCAATTTTTTATCATACAAT-GAAAAGGA
374 ATGGTATGAGAGCATAATAGTCAA-TTGGCCAAAT-TTAATTTCTTATCATATAATGGAAAA-GT
* * * * * * *
14650419 ATTTTGGTAATTTTATAGGAAATAATTTAGTAAATAATTATAAGAGAATGTGTATTTTCATAATT
436 ATTTTGGTAATTTCATAAGAGATTATTTAGTAAATAATTATAA-AGAAAGGGTATTTTCATAAAT
** * * ** * * *
14650484 ATGGTAT-AAGAGTATAATAGTAAACTTGGTCATA--TGTCAATTTCTTATCATATAA-TGAAAG
500 ATACTATGAGGA-CATAATAGTCCA-TTTGAC-TACGTGTCAATCTCTTATCATATAATTGAAA-
* ** * * * * *
14650545 AGGTAATTGCA-TAATTTCAT-AGAAGATTATTCAGCAAATAATCATAAGAGAAGGGGTATTTTC
561 AGG-CATTTTAGTAATTTCTTAAG-AGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTC
* * *
14650608 GTAATTATGATATAAG
624 ATAATTATCATATAAA
* * * * *
14650624 GGAATAATAATCAATTGGGCCACATTTTGGT-AATTTTGTAGGAGATAATTACTAAATAATTATA
1 GGCATAATAGTCAATT-TGCCACA---T-GTCAA-TTTCT------T-A-TA-T--A-AA--ATG
* * * * * *
14650688 AAAGTATGGGTATTTTTGTAATTTTA-GAGGATATTATTTAATAAATAGTTATAAGAGAA-GAGG
46 GAA--A-GGGAATTTTTGTAATTTCATTA-GAGATTATTTAATAAATAATTATAAGAGAATG-GG
* * * * * *
14650751 TATTTTAATAATTATGGTATGAGGGCATTATAATCCA-TTTGGCCAAATGTCAATTTCTTATCAT
106 TATTTTCATAATTATGGTATGAGGTCATAATAGT-CATTTTAGCCACATGTCAATTTCTTATCAT
* * * * **
14650815 ATAATGGAAAAA-GCATTTTTG-TAATTT-TCATAGGTGATTATTTAGAAAATAATTATAAGTGA
170 -TAA--CAAAAAGGCA-TTTTGATAATTTCTTA-AGG-GATTATTTGGTAAATAATTATAAAAG-
* * * * * * *
14650877 ATGGGTATTTTTATAATTATGGTATG-AGGGCATAATACTCCATTTGACTACATGTCAATTTTTT
228 A-GGATATTTTGATAATTATGGTATGAAGGTCATAATAGTCAATTTGAC-ACATGTTAATTTCTT
* * * * ** * * * *
14650941 ATCATATACTA-CAAAGGTTATTTTTCTATTTTTATAATG-GATTATTAAGCAAA-AATTATAAG
291 ATCATATAATAGAAAAAGATATTTTGATAATTTCATAA-GAGATTATTTAGTAAATAATTATAAG
* * * * * * * *
14651003 AGAAATGGTGTCTTCATAATTATGGTATTAGGGCATAATAGTTAATTTGGTCACACA-TCAATTT
355 A-AAAT-GTATTTTCGTAATTATGGTATGAGAGCATAATAGTCAA-TTGG-C-CAAATTTAATTT
* * * * * *
14651067 CTTATCATATGATGGAAAGGGCATTTTGGTAATTTCATAAGGGATAATTTTGTAAATAATTATAA
415 CTTATCATATAATGGAAA-AGTATTTTGGTAATTTCATAAGAGATTATTTAGTAAATAATTATAA
* *
14651132 GAGAATGTGTATTTTCATAA
479 -AGAAAGGGTATTTTCATAA
14651152 TTATGGTCTA
Statistics
Matches: 1920, Mismatches: 359, Indels: 296
0.75 0.14 0.11
Matches are distributed among these distances:
613 5 0.00
614 55 0.03
615 235 0.12
616 30 0.02
617 95 0.05
618 59 0.03
619 3 0.00
620 1 0.00
621 3 0.00
622 2 0.00
623 1 0.00
624 1 0.00
625 1 0.00
626 3 0.00
628 1 0.00
629 1 0.00
632 1 0.00
634 1 0.00
637 3 0.00
638 1 0.00
639 1 0.00
640 1 0.00
641 2 0.00
642 44 0.02
643 17 0.01
644 88 0.05
645 85 0.04
646 330 0.17
647 44 0.02
648 156 0.08
649 66 0.03
650 30 0.02
651 3 0.00
652 59 0.03
653 59 0.03
654 18 0.01
655 27 0.01
656 1 0.00
659 1 0.00
660 1 0.00
661 2 0.00
663 1 0.00
664 1 0.00
666 5 0.00
667 3 0.00
668 8 0.00
669 188 0.10
670 169 0.09
671 8 0.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (639 bp):
GGCATAATAGTCAATTTGCCACATGTCAATTTCTTATATAAAATGGAAAGGGAATTTTTGTAATT
TCATTAGAGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAATTATGGTATGAGGT
CATAATAGTCATTTTAGCCACATGTCAATTTCTTATCATTAACAAAAAGGCATTTTGATAATTTC
TTAAGGGATTATTTGGTAAATAATTATAAAAGAGGATATTTTGATAATTATGGTATGAAGGTCAT
AATAGTCAATTTGACACATGTTAATTTCTTATCATATAATAGAAAAAGATATTTTGATAATTTCA
TAAGAGATTATTTAGTAAATAATTATAAGAAAATGTATTTTCGTAATTATGGTATGAGAGCATAA
TAGTCAATTGGCCAAATTTAATTTCTTATCATATAATGGAAAAGTATTTTGGTAATTTCATAAGA
GATTATTTAGTAAATAATTATAAAGAAAGGGTATTTTCATAAATATACTATGAGGACATAATAGT
CCATTTGACTACGTGTCAATCTCTTATCATATAATTGAAAAGGCATTTTAGTAATTTCTTAAGAG
ATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTATCATATAAA
Found at i:14649929 original size:130 final size:129
Alignment explanation
Indices: 14648043--14649929 Score: 1301
Period size: 130 Copynumber: 14.6 Consensus size: 129
14648033 TGGAAATGTC
*
14648043 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGG--TCATGTCAATTTCTTAGT-ATA
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTA-TCATA
* * * * * ** * *
14648105 GAATG-GAAAGGAAATTTTTGTAATTTCTTAGTGGATTATTTAATAAATAACTATAAGAGAATGG
65 TAATGAAAAAGG-TATTTTGGTAATTTCATA-AAGATTATTTAGTAAATAATTATAAGAGAATGG
14648169 GT
128 GT
** * * * * * *
14648171 ATTTTCATAATTATGTTATGAGGTCATAAT-GATCGATTTGACCACATGACAAATGTCTTATCAT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAG-TCAATTTGGCCACATGTC-AATTTCTTATCAT
* ** * * * * * *
14648235 ATAATTGAAAAA-GTGTTTTAATAATTTCTTAAGGGCTTCTTTGGTAAATAATTATAAAAGAA-G
64 ATAA-TGAAAAAGGTATTTTGGTAATTTCATAA-AGATTATTTAGTAAATAATTATAAGAGAATG
14648298 GGAT
127 GG-T
* * * * * * * *
14648302 ATTTTGGTAATTTTGGTATGAAGGCATAATAATCAATTTGACCACGTTTCAATTTTTTATCATAT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * *
14648367 AATGGAAACAA--TATTTTTGTAATTTCATAAGAGATTGTTAAGTAAATAATTATAAGAGAACT-
66 AAT-GAAA-AAGGTATTTTGGTAATTTCATAA-AGATTATTTAGTAAATAATTATAAGAGAA-TG
*
14648429 GTT
127 GGT
* * * *
14648432 ATATTTTGGTAATAATGGTATGAAGGCATAATAGTCAA-TTGGACAACAT-TTAATTTCTTATCA
1 AT-TTTT-GTAATTATGGTATGAGGGCATAATAGTCAATTTGG-CCACATGTCAATTTCTTATCA
* * * * * *
14648495 TATAATGGAAATA-GAATTTTGGTAATTTCTTAGGAGATTATTTAGTAAATAATTATAA-ACAAA
63 TATAAT-GAAAAAGGTATTTTGGTAATTTCATA-AAGATTATTTAGTAAATAATTATAAGAGAAT
14648558 GGGTT
126 GGG-T
* ** * * * *** * *
14648563 ATATTCATAAATATGGTATGAGGACATAATAGTCCATTTGATTACGTGTCAATTTCTTTTCATAT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * * * * * * *
14648628 AATTG-AAAAGGCATTTTAGTAATTTCTTAAGTGCTTCTTTAGTAAATAGTTATAAGAGAATGTG
66 AA-TGAAAAAGGTATTTTGGTAATTTCATAA-AGATTATTTAGTAAATAATTATAAGAGAATGGG
14648692 T
129 T
* * * * * * *
14648693 ATTTTTGTAATTCTGGTATAAAGGCATAATAGTCAATTTGACCACATTTCAATTTCTTATTATAA
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * * * *
14648758 AATGAAAAAGGGTATTTTTGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAAAGAAAGGA
66 AATGAAAAA-GGTATTTTGGTAATTTCATA-AAGATTATTTAGTAAATAATTATAAGAGAATGGG
14648823 T
129 T
* * *
14648824 ATATTTCTATAATTATGGTATGAGGGCATAATAGTCAA-TTGGACA-ATGTGTCCATTTCTTATC
1 AT-TTT-TGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACA--TGTCAATTTCTTATC
* ** * * * ** * * **
14648887 ATACAATG--AGGGGCATTTTGATAATTTCTTAGGGGATTATATGGCCAATAATTATAAGAGAA-
62 ATATAATGAAAAAGGTATTTTGGTAATTTCATA-AAGATTATTTAGTAAATAATTATAAGAGAAT
14648949 ---T
126 GGGT
* * * ** * * *
14648950 A-TTTTGAAAATTATGGTATGAAGGTATAATAGTTTATTTGACTACATGTCAATTTCTTATCATG
1 ATTTTTG-TAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
*** * * * * *** * *
14649014 TAAT-AGAATTTGCATTTTGATTATTTTATTGGTGACTATTTAGTAAA-AATTAAAAGAGAAAT-
65 TAATGA-AAAAGGTATTTTGGTAATTTCA-TAAAGATTATTTAGTAAATAATTATAAGAG-AATG
14649076 GGT
127 GGT
* * * * * * * * *
14649079 ATTTTCGTAATTATTGTATGAGAGTATAATAGTCAATTCGGCCAAATATTAACTTCTTATCATAT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * * * *
14649144 AATGGGAAAA-GTATTTTAGTAATTTCATAAGAGATTATTTAGTAAATATTTATAATAGAATGAG
66 AAT-GAAAAAGGTATTTTGGTAATTTCATAA-AGATTATTTAGTAAATAATTATAAGAGAATGGG
14649208 T
129 T
** * ** * * * * *
14649209 ATTTTCATAACTATACTATGATGCCATAATAGTCTATTT-GCCTACGTGTCAATCTCTTATCATA
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCC-ACATGTCAATTTCTTATCATA
* * * * * * *
14649273 TATTG-GAAAGGATATTCTGATAATTTTATAAGAGATTATTTAGTAAATAATTATATGAGAAAGG
65 TAATGAAAAAGG-TATTTTGGTAATTTCATAA-AGATTATTTAGTAAATAATTATAAGAGAATGG
14649337 GT
128 GT
** ** * * * * *
14649339 ATTTTCATAATTATCATGTGATGGCATAATAGTCAACTT-GCCCCATGTCAATTTCTCATCATAT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * * * * * * *
14649403 ATTGGAAAGGGCATTTTGATAATTTCATTAGAGATTATTTAATAAATAATTATAAGTGAATGGGT
66 AATGAAAAAGGTATTTTGGTAATTTCA-TAAAGATTATTTAGTAAATAATTATAAGAGAATGGGT
** ** * * * *
14649468 ATTTTCATAATTATGGTATGAGGTTATAATAGTCATTTTAGCCACATGTCAATTTTTTATCATGT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
* * * * * * *
14649533 AA-CAAAAATGGCATTTTGGTAATTTTATAAACGATTATTTGGTAAATAATTATAAAAGATTGGC
66 AATGAAAAA-GGTATTTTGGTAATTTCATAAA-GATTATTTAGTAAATAATTATAAGAGAATGGG
14649597 T
129 T
* * * * * * * * *
14649598 CTTTTCT-TAATTATGATATAAGGTCATAATAGTCAATTTAGTCACATGTTAACTTCTTATTATA
1 ATTTT-TGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * *
14649662 AAATGAAAAAGATATTTTGATAATTTCATAAAGGATTATTTAGTAAATAATTATAAGACAA---G
65 TAATGAAAAAGGTATTTTGGTAATTTCATAAA-GATTATTTAGTAAATAATTATAAGAGAATGGG
14649724 T
129 T
* *
14649725 ATTTTTGTAATTATGGTATGAGGGCATAATAATTC-ATTTGGCTACATGTCAATTTCTTATCATA
1 ATTTTTGTAATTATGGTATGAGGGCATAAT-AGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * *
14649789 TATTGGAAAAGGTATTTTGGTAATTTCATAGAAGATTATTTAGTAAATAATTATAAGAGAAGGGG
65 TAATGAAAAAGGTATTTTGGTAATTTCATA-AAGATTATTTAGTAAATAATTATAAGAGAATGGG
14649854 T
129 T
* * * * * * *
14649855 ATTTTTGTGATTATGGTATGAGGGTATAATAGTCAATTTGGTCACGTGTTAATTTCTTCTCATTT
1 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
14649920 AATGAAAAAG
66 AATGAAAAAG
14649930 TAAATAATTA
Statistics
Matches: 1369, Mismatches: 322, Indels: 134
0.75 0.18 0.07
Matches are distributed among these distances:
123 1 0.00
124 46 0.03
125 14 0.01
126 31 0.02
127 102 0.07
128 42 0.03
129 220 0.16
130 603 0.44
131 219 0.16
132 42 0.03
133 49 0.04
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (129 bp):
ATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATAT
AATGAAAAAGGTATTTTGGTAATTTCATAAAGATTATTTAGTAAATAATTATAAGAGAATGGGT
Found at i:14650003 original size:98 final size:99
Alignment explanation
Indices: 14649830--14650030 Score: 237
Period size: 98 Copynumber: 2.0 Consensus size: 99
14649820 AAGATTATTT
* * * * * *
14649830 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTGATTATGGTATGAGGGTATAATAGTCAATTTG
1 AGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATATAAGGCTATAATAGTCAATTTG
** * * *
14649895 GTCACGTGTTAATTTCTTCTCATTTAATGAAAA-
66 ACCACATGTTAATTTCTTATCATATAATGAAAAG
* *
14649928 AGTAAATAATTATAAAAGAAGGGTTATTTTCGTAATTATGATATTAAGGCT-TAATTGTCAATTT
1 AGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATA-TAAGGCTATAATAGTCAATTT
*
14649992 GACCTA-ATGTTAATTTCTTATCGTATAATGAAAAG
65 GACC-ACATGTTAATTTCTTATCATATAATGAAAAG
14650027 AGTA
1 AGTA
14650031 TTTTCATAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
98 76 0.88
99 10 0.12
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.39
Consensus pattern (99 bp):
AGTAAATAATTATAAAAGAAGGGGTATTTTCGTAATTATGATATAAGGCTATAATAGTCAATTTG
ACCACATGTTAATTTCTTATCATATAATGAAAAG
Found at i:14650228 original size:358 final size:355
Alignment explanation
Indices: 14649574--14650231 Score: 837
Period size: 358 Copynumber: 1.8 Consensus size: 355
14649564 CGATTATTTG
** * * *
14649574 GTAAATAATTATAAAAGATTGGCTCTTTTCTTAATTATGATATAAGGTCATAATAGTCAATTTAG
1 GTAAATAATTATAAAAGAAGGGCTATTTTCGTAATTATGATATAAGGTCATAATAGTCAATTTAC
* * * *
14649639 TCACATGTTAACTTCTTATTATAAAATGAAAAAGATATTTTGATAATTTCATAAAGGATTATTTA
66 TCACATGTTAACTTCTTATCATAAAATGAAAAAGATATTTTCATAATTGCATAAAGGAATATTTA
** * * * *
14649704 GTAAATAATTATAAGACAAGTATTTTTGTAATTATGGTATGAGGGCATAATAATTCATTTGGCTA
131 GTAAATAATTATAAGACAAGTATTTTAATAATTATGATATGAAGGCATAATAATACATTTGGCCA
*** * *
14649769 CATGTCAATTTCTTATCATATATTGGAAAAGGTATTTTGGTAATTTCATAGAAGATTATTTAGTA
196 CATGTCAATTTCTTATCATATAACAGAAAAGGCATTTTGGTAATTTCATAGAAGATTATTTAGAA
* ** *
14649834 AATAATTATAAGAGAAGGGGTATTTTTGTGATTATGGTATGAGGGTATAATAGTCAATTTGGTCA
261 AATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGTATAATAGTCAATTTGGTCA
14649899 CGTGTTAATTTCTTCTCATTTAATGAAAAA
326 CGTGTTAATTTCTTCTCATTTAATGAAAAA
* * *
14649929 GTAAATAATTATAAAAGAAGGGTTATTTTCGTAATTATGATATTAAGG-CTTAATTGTCAATTTG
1 GTAAATAATTATAAAAGAAGGGCTATTTTCGTAATTATGATA-TAAGGTCATAATAGTCAATTT-
* * * *
14649993 AC-CTA-ATGTTAATTTCTTATCGTATAATG-AAAAGAGTATTTTCATAATTGCAT-ATGAGAAT
64 ACTC-ACATGTTAACTTCTTATCATAAAATGAAAAAGA-TATTTTCATAATTGCATAAAG-GAAT
* *
14650054 ATTTAGTAAATAATTATAAAAGA-AAGGGTATTTTAATAATTATGATATGAAGGTATTATAATAC
126 ATTTAGTAAATAATTAT--AAGACAA--GTATTTTAATAATTATGATATGAAGGCATAATAATAC
** *
14650118 ATTTGGCCACATGTCAATTTCTTATCATATAACAGAAGAA-GCATTTTGGTAATTTTGTATG-TG
187 ATTTGGCCACATGTCAATTTCTTATCATATAACAGAA-AAGGCATTTTGGTAATTTCATA-GAAG
14650181 ATTATTTAGAAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTAT
250 ATTATTTAGAAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTAT
14650232 AAAGGCATAG
Statistics
Matches: 256, Mismatches: 36, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
354 8 0.03
355 106 0.41
356 9 0.04
357 4 0.02
358 126 0.49
359 3 0.01
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.40
Consensus pattern (355 bp):
GTAAATAATTATAAAAGAAGGGCTATTTTCGTAATTATGATATAAGGTCATAATAGTCAATTTAC
TCACATGTTAACTTCTTATCATAAAATGAAAAAGATATTTTCATAATTGCATAAAGGAATATTTA
GTAAATAATTATAAGACAAGTATTTTAATAATTATGATATGAAGGCATAATAATACATTTGGCCA
CATGTCAATTTCTTATCATATAACAGAAAAGGCATTTTGGTAATTTCATAGAAGATTATTTAGAA
AATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATGAGGGTATAATAGTCAATTTGGTCA
CGTGTTAATTTCTTCTCATTTAATGAAAAA
Found at i:14650529 original size:259 final size:260
Alignment explanation
Indices: 14649931--14651156 Score: 740
Period size: 260 Copynumber: 4.6 Consensus size: 260
14649921 ATGAAAAAGT
* * * * * ** * * *
14649931 AAATAATTATAAAAG-AAGGGTTATTTTCGTAATTATGATATTAAGGCTTAATTGTCAATTTGAC
1 AAATAATTATAAGAGAAAGGG-TATTTTCATAATTATGGTATAAAGGCATAATAATAAACTTGGC
* * * * * * *
14649995 CTA-ATGTTAATTTCTTATCGTATAATGAAA-AGAGTATTTTCATAATTGCATATGAGAATATTT
65 C-ACATGTCAATTTCTTATCATATAATGAAAGAG-GTAATTGCATAATTTCATAGGAGATTATTT
* * * * * * * *
14650058 AGTAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAGGTATTATAAT-ACATTT
128 ACTAAATAATTCTAAGAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATAATCA-ATTT
* * * * ** *
14650122 GGCCACATGTCAATTTCTTATCATATAACAGAAGAAGCATTTTGGTAATTTTGTATGTGATTATT
192 GGCCACATGTCAATTTCTTATCATACAACAGAAGAAGAATTTTGGTAATTTTATAGGAAATAATT
14650187 TAGA
257 TAGA
* ** *
14650191 AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAGTAATTCATTTGGCC
1 AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAATAATAAACTTGGCC
* * * * * *
14650256 ACATGTCGATTTCTTATCATATACTGGAAA-TGG-AATTTCACTATTTTTATAGGAGATTATTTA
66 ACATGTCAATTTCTTATCATATAAT-GAAAGAGGTAATTGCA-TAATTTCATAGGAGATTATTTA
* * *
14650319 CTAAATAATTCTGAGAGAAGGGGTATTTTCATAATTATGATATGAGGGCATAATAGTCAATTTGG
129 CTAAATAATTCTAAGAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATAATCAATTTGG
* * * *
14650384 TCATATGTCAATTTTTTATCATACAA-TGAA-AAGGAATTTTGGTAATTTTATAGGAAATAATTT
194 CCACATGTCAATTTCTTATCATACAACAGAAGAA-GAATTTTGGTAATTTTATAGGAAATAATTT
*
14650447 AGT
258 AGA
* * * * *
14650450 AAATAATTATAAGAGAATGTGTATTTTCATAATTATGGTAT-AAGAGTATAATAGTAAACTTGGT
1 AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAG-GCATAATAATAAACTTGGC
* * *
14650514 CATATGTCAATTTCTTATCATATAATGAAAGAGGTAATTGCATAATTTCATAGAAGATTATTCAG
65 CACATGTCAATTTCTTATCATATAATGAAAGAGGTAATTGCATAATTTCATAGGAGATTATTTA-
* * *
14650579 C-AAATAA-TCATAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGAATAATAATCAATTGG
129 CTAAATAATTC-TAAGAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATAATCAATTTG
* * * * *
14650642 GCCACATTTTGGT-AATTT-TGTAGGAGATAATTACTAAATAATTATAAAAGTATGGGTATTTTT
193 GCCACA---T-GTCAATTTCT-T-----ATCA-TAC--AA-CA-GA-AGAAG-A-----ATTTTG
* * *
14650705 GTAATTTTAGAGGATATTATTTA-A
236 GTAATTTTATAGGAAATAATTTAGA
* * * * * ** *
14650729 TAAATAGTTATAAGAG-AAGAGGTATTTTAATAATTATGGTATGAGGGCATTATAATCCATTTGG
1 -AAATAATTATAAGAGAAAG-GGTATTTTCATAATTATGGTATAAAGGCATAATAATAAACTTGG
* * * ** *
14650793 CCAAATGTCAATTTCTTATCATATAATGGAAAAAGCATTTTTG--TAATTTTCATAGGTGATTAT
64 CCACATGTCAATTTCTTATCATATAAT-GAAAGAG-GTAATTGCATAA-TTTCATAGGAGATTAT
** * * * * * * * *
14650856 TTAGAAAATAATTATAAGTGAATGGGTATTTTTATAATTATGGTATGAGGGCATAATACTCCATT
126 TTACTAAATAATTCTAAGAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATAATCAATT
* * * * * ** *
14650921 TGACTACATGTCAATTTTTTATCATATACTACA-AAG--GTTATTTTTCTATTTTTATAATGG--
191 TGGCCACATGTCAATTTCTTATC--ATACAACAGAAGAAG-AATTTTGGTAATTTTAT-A-GGAA
* * *
14650981 ATTATTAAGC
251 ATAATTTAGA
* * * * * * * * *
14650991 AAA-AATTATAAGAGAAATGGTGTCTTCATAATTATGGTATTAGGGCATAATAGTTAATTTGGTC
1 AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAATAATAAACTTGGCC
** * * * * *
14651055 ACACATCAATTTCTTATCATATGATGGAAAG-GGCATTTTG-GTAATTTCATAAGG-GATAATTT
66 ACATGTCAATTTCTTATCATATAAT-GAAAGAGGTA-ATTGCATAATTTCAT-AGGAGATTATTT
** * * *
14651117 TGTAAATAATTATAAGAGAATGTGTATTTTCATAATTATG
128 ACTAAATAATTCTAAGAGAAGGGGTATTTTCATAATTATG
14651157 GTCTAAAGGC
Statistics
Matches: 765, Mismatches: 147, Indels: 109
0.75 0.14 0.11
Matches are distributed among these distances:
258 11 0.01
259 240 0.31
260 246 0.32
261 37 0.05
262 8 0.01
263 4 0.01
266 2 0.00
267 3 0.00
268 4 0.01
269 1 0.00
270 2 0.00
271 1 0.00
272 1 0.00
273 3 0.00
274 5 0.01
275 4 0.01
277 2 0.00
278 7 0.01
279 3 0.00
280 99 0.13
281 77 0.10
282 5 0.01
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (260 bp):
AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAATAATAAACTTGGCC
ACATGTCAATTTCTTATCATATAATGAAAGAGGTAATTGCATAATTTCATAGGAGATTATTTACT
AAATAATTCTAAGAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATAATCAATTTGGCC
ACATGTCAATTTCTTATCATACAACAGAAGAAGAATTTTGGTAATTTTATAGGAAATAATTTAGA
Found at i:14650631 original size:130 final size:128
Alignment explanation
Indices: 14649931--14650632 Score: 599
Period size: 130 Copynumber: 5.4 Consensus size: 128
14649921 ATGAAAAAGT
* * * * * * *
14649931 AAATAATTATAAAAGAAGGGTTATTTTCGTAATTATGATATTAA-GGCTTAATTGTCAATTTGAC
1 AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATA-TAAGGGCATAATAGTAAATTTGGC
* * * * ** *
14649995 C-TAATGTTAATTTCTTATCGTATAATGAAAAGAGTATTTTCATAATTGCATATGAGAATATTTA
65 CAT-ATGTCAATTTCTTATCATATAATGAAAAG-G-AATTGCATAATTTTATATGAGATTATTTA
*
14650059 GT
127 GC
* * * * * * *
14650061 AAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAA-GGTATTATAATACATTTGGC
1 AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATAT-AAGGGCATAATAGTAAATTTGGC
* * * * * * *
14650125 CACATGTCAATTTCTTATCATATAACAGAAGAAGCATTTTG-GTAATTTTGTATGTGATTATTTA
65 CATATGTCAATTTCTTATCATATAA-TGAA-AAGGA-ATTGCATAATTTTATATGAGATTATTTA
*
14650189 GA
127 GC
* * * * * **
14650191 AAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAGTAATTCATTTGGCC
1 AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATATAAGGGCATAATAGTAAATTTGGCC
* * * * * * *
14650256 ACATGTCGATTTCTTATCATATACTGGAAATGGAATTTCACTATTTTTATAGGAGATTATTTA-C
66 ATATGTCAATTTCTTATCATATAAT-GAAAAGGAATTGCA-TAATTTTATATGAGATTATTTAGC
* * * * *
14650320 TAAATAATTCTGAGAGAAGGGGTATTTTCATAATTATGATATGAGGGCATAATAGTCAATTTGGT
1 -AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATATAAGGGCATAATAGTAAATTTGGC
* * * * * *
14650385 CATATGTCAATTTTTTATCATACAATGAAAAGGAATTTTG-GTAATTTTATAGGAAATAATTTAG
65 CATATGTCAATTTCTTATCATATAATGAAAAGGAA--TTGCATAATTTTATATGAGATTATTTAG
*
14650449 T
128 C
* * * * * * *
14650450 AAATAATTATAAGAGAATGTGTATTTTCATAATTATGGTATAAGAGTATAATAGTAAACTTGGTC
1 AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATATAAGGGCATAATAGTAAATTTGGCC
* *
14650515 ATATGTCAATTTCTTATCATATAATGAAAGAGGTAATTGCATAATTTCATA-GAAGATTATTCAG
66 ATATGTCAATTTCTTATCATATAATGAAA-AGG-AATTGCATAATTTTATATG-AGATTATTTAG
14650579 C
128 C
* * *
14650580 AAATAATCATAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGAATAATA
1 AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATATAAGGGCATAATA
14650633 ATCAATTGGG
Statistics
Matches: 462, Mismatches: 93, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
128 2 0.00
129 119 0.26
130 328 0.71
131 10 0.02
132 3 0.01
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (128 bp):
AAATAATTATAAGAGAAGGGGTATTTTCATAATTATGATATAAGGGCATAATAGTAAATTTGGCC
ATATGTCAATTTCTTATCATATAATGAAAAGGAATTGCATAATTTTATATGAGATTATTTAGC
Found at i:14650648 original size:389 final size:390
Alignment explanation
Indices: 14649930--14650648 Score: 869
Period size: 389 Copynumber: 1.8 Consensus size: 390
14649920 AATGAAAAAG
* * * * *
14649930 TAAATAATTATAAAAGAAGGGTTATTTTCGTAATTATGATATTAAGGCTTAATTGTCAATTTGAC
1 TAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAAGGCATAATAGTCAATTTGAC
* * * * * *
14649995 CTAATGTTAATTTCTTATCGTATAATGAAAAGAGTATTTTCATAATTGCATATGAGAATATTTAG
66 ATAATGTCAATTTCTTATCATACAATGAAAAGAGAATTTTCATAATTGCATAGGAGAATATTTAG
* * *
14650060 TAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAGGTATTATAATACATTTGGC
131 TAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAGGTATAATAATAAACTTGGC
* * ** * *
14650125 CACATGTCAATTTCTTATCATATAACAGAAGAAGCATTTTGGTAATTTTGTATGTGATTATTTAG
196 CACATGTCAATTTCTTATCATATAACAGAAGAAGCATATTGATAATTTCATATGAGATTATTCAG
* * * * *
14650190 AAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTATAAAGGCATAGTAATTCATTTGGC
261 AAAATAATCATAAGAGAAAGGGTATTTTCATAATTATGATATAAAGGAATAATAATTCATTGGGC
14650255 CACATGTCGATTTCTTATCATATACTGGAAATGGAATTTCACTATTTTTATAGGAGATTATTTAC
326 CACATGTCGATTTCTTATCATATACTGGAAATGGAATTTCACTATTTTTATAGGAGATTATTTAC
* * * * *
14650320 TAAATAATTCTGAGAGAAGGGGTATTTTCATAATTATGATATGAGGGCATAATAGTCAATTTGGT
1 TAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAAGGCATAATAGTCAATTT-GA
* ** **
14650385 CAT-ATGTCAATTTTTTATCATACAATGAAAAG-GAATTTTGGTAATTTTATAGGA-AATAATTT
65 CATAATGTCAATTTCTTATCATACAATGAAAAGAGAATTTTCATAATTGCATAGGAGAAT-ATTT
* * * * * *
14650447 AGTAAATAATTATAAGAGAATGTGTATTTTCATAATTATGGTAT-AAGAGTATAATAGTAAACTT
129 AGTAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAG-GTATAATAATAAACTT
* * * * *
14650511 GGTCATATGTCAATTTCTTATCATATAA-TGAAAGAGGTA-ATTGCATAATTTCATA-GAAGATT
193 GGCCACATGTCAATTTCTTATCATATAACAG-AAGAAGCATATTG-ATAATTTCATATG-AGATT
* * * *
14650573 ATTCAGCAAATAATCATAAGAGAAGGGGTATTTTCGTAATTATGATATAAGGGAATAATAA-TCA
255 ATTCAGAAAATAATCATAAGAGAAAGGGTATTTTCATAATTATGATATAAAGGAATAATAATTC-
14650637 ATTGGGCCACAT
319 ATTGGGCCACAT
14650649 TTTGGTAATT
Statistics
Matches: 272, Mismatches: 50, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
388 13 0.05
389 178 0.65
390 78 0.29
391 3 0.01
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (390 bp):
TAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAAGGCATAATAGTCAATTTGAC
ATAATGTCAATTTCTTATCATACAATGAAAAGAGAATTTTCATAATTGCATAGGAGAATATTTAG
TAAATAATTATAAAAGAAAGGGTATTTTAATAATTATGATATGAAGGTATAATAATAAACTTGGC
CACATGTCAATTTCTTATCATATAACAGAAGAAGCATATTGATAATTTCATATGAGATTATTCAG
AAAATAATCATAAGAGAAAGGGTATTTTCATAATTATGATATAAAGGAATAATAATTCATTGGGC
CACATGTCGATTTCTTATCATATACTGGAAATGGAATTTCACTATTTTTATAGGAGATTATTTAC
Found at i:14650865 original size:131 final size:131
Alignment explanation
Indices: 14650699--14651158 Score: 449
Period size: 131 Copynumber: 3.5 Consensus size: 131
14650689 AAGTATGGGT
* * *
14650699 ATTTTTGTAATTTT-AGAGGAT-ATTATTTA-ATAAATAGTTATAAGAGAA-GAGGTATTTTAAT
1 ATTTTTGTAATTTTCATAGG-TGATTATTTAGA-AAATAATTATAAGAGAATG-GGTATTTTCAT
* *
14650760 AATTATGGTATGAGGGCATTATAATCCATTTGGCCAAATGTCAATTTCTTATCATATAATGGAAA
63 AATTATGGTATGAGGGCATAATAATCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA
*
14650825 AAGC
128 AGGC
* *
14650829 ATTTTTGTAATTTTCATAGGTGATTATTTAGAAAATAATTATAAGTGAATGGGTATTTTTATAAT
1 ATTTTTGTAATTTTCATAGGTGATTATTTAGAAAATAATTATAAGAGAATGGGTATTTTCATAAT
* * * * *
14650894 TATGGTATGAGGGCATAATACTCCATTTGACTACATGTCAATTTTTTATCATATACT--ACAAAG
66 TATGGTATGAGGGCATAATAATCCATTTGGCCACATGTCAATTTCTTATCATATAATGGA-AAAG
*
14650957 GTT
130 G-C
* * * * * * *
14650960 ATTTTTCT-ATTTTTATA-ATGGATTATTAAGCAAA-AATTATAAGAGAAAT-GGTGTCTTCATA
1 ATTTTTGTAATTTTCATAGGT-GATTATTTAGAAAATAATTATAAGAG-AATGGGTATTTTCATA
* * ** * ** * *
14651021 ATTATGGTATTAGGGCATAATAGTTAATTTGGTCACACATCAATTTCTTATCATATGATGGAAAG
64 ATTATGGTATGAGGGCATAATAATCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA
14651086 GGC
129 GGC
* * * * *
14651089 ATTTTGGTAA-TTTCATAAGG-GATAATTTTGTAAATAATTATAAGAGAATGTGTATTTTCATAA
1 ATTTTTGTAATTTTCAT-AGGTGATTATTTAGAAAATAATTATAAGAGAATGGGTATTTTCATAA
14651152 TTATGGT
65 TTATGGT
14651159 CTAAAGGCAT
Statistics
Matches: 268, Mismatches: 47, Indels: 30
0.78 0.14 0.09
Matches are distributed among these distances:
129 92 0.34
130 76 0.28
131 98 0.37
132 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (131 bp):
ATTTTTGTAATTTTCATAGGTGATTATTTAGAAAATAATTATAAGAGAATGGGTATTTTCATAAT
TATGGTATGAGGGCATAATAATCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGG
C
Found at i:14651186 original size:110 final size:106
Alignment explanation
Indices: 14651059--14651263 Score: 261
Period size: 106 Copynumber: 1.9 Consensus size: 106
14651049 TTGGTCACAC
* * * *
14651059 ATCAATTTCTTATCATATGATGGAAAGG-GCATTTTGGTAATTTCA-TAAGGGATAATTTTGTAA
1 ATCAATTTCTTACCATATAATGGAAAGGAGAATTTT-GTAATTT-ATTAA--GA-AATTAT-TAA
14651122 ATAATTATAAGAGAATGTGTATTTTCATAATTATGGTCTAAAGGCAT
60 ATAATTATAAGAGAATGTGTATTTTCATAATTATGGTCTAAAGGCAT
* * * *
14651169 ATCAATTTCTTACCATATAATGGAGAGGATAATTTTGTGATTTATTAAGAAATTATTAAGTAATT
1 ATCAATTTCTTACCATATAATGGAAAGGAGAATTTTGTAATTTATTAAGAAATTATTAAATAATT
*
14651234 ATAAGAGAATGTGTATTTTCGTAATTATGG
66 ATAAGAGAATGTGTATTTTCATAATTATGG
14651264 CATGTGGGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
106 37 0.44
107 5 0.06
108 2 0.02
109 1 0.01
110 34 0.40
111 5 0.06
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (106 bp):
ATCAATTTCTTACCATATAATGGAAAGGAGAATTTTGTAATTTATTAAGAAATTATTAAATAATT
ATAAGAGAATGTGTATTTTCATAATTATGGTCTAAAGGCAT
Found at i:14651816 original size:130 final size:131
Alignment explanation
Indices: 14651530--14651860 Score: 339
Period size: 130 Copynumber: 2.5 Consensus size: 131
14651520 ATGCAAGCGC
* *
14651530 CATTTTAGTATTTTCATAGGTGATTATTTAATAAATAATTATAAGAGAAGGAGTATTTTTATAAT
1 CATTTTAGTATTTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGGAGTATTTTTATAAT
* * * **
14651595 TATGGCATAGAGGGCATAATAGTTGATTTAGCTACATATCAATTTCTTAACATATAATGGAAATA
66 TATGGCATAGAGGGAATAATAGTTCATTTAGCTACATATCAATTTCTTAACAAATAATAAAAATA
14651660 A
131 A
* ** * *
14651661 CATTTTCA-TAATTTCATAAAAGATTATTTAGTAAATAATTATGAGAG-AGGTAGTATTTTTTTA
1 CATTTT-AGTATTTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGG-AGTATTTTTATA
* *** * * *
14651724 GTTATGTTGTA-AGGGAATAATA-TTCCATTTAGCTATATGTCAATTTCTTATCAAATAATAAAA
64 ATTATGGCATAGAGGGAATAATAGTT-CATTTAGCTACATATCAATTTCTTAACAAATAATAAAA
**
14651787 ATGT
128 ATAA
* ** * * * *
14651791 CATTTTTGTATTTTTTTAGGCGATTATTCAGTAAATAATTATAAAAGAA-GAGGTATTTTCATAA
1 CATTTTAGTATTTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGGA-GTATTTTTATAA
14651855 TTATGG
65 TTATGG
14651861 TATGGGAGTA
Statistics
Matches: 159, Mismatches: 35, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
129 3 0.02
130 97 0.61
131 58 0.36
132 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (131 bp):
CATTTTAGTATTTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGGAGTATTTTTATAAT
TATGGCATAGAGGGAATAATAGTTCATTTAGCTACATATCAATTTCTTAACAAATAATAAAAATA
A
Found at i:14651984 original size:19 final size:21
Alignment explanation
Indices: 14651955--14651994 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14651945 AAAATATGTT
14651955 TTTTTACAATA-AAAAATTAA
1 TTTTTACAATACAAAAATTAA
*
14651975 TTTTTA-AATACCAAAATTAA
1 TTTTTACAATACAAAAATTAA
14651995 GACCATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTTTACAATACAAAAATTAA
Found at i:14653473 original size:35 final size:37
Alignment explanation
Indices: 14653394--14653473 Score: 94
Period size: 35 Copynumber: 2.2 Consensus size: 37
14653384 CCATATCTCC
*
14653394 TGCACATCATAATAAGATAATATATGCATTCCATCTTA
1 TGCACATCA-AATAAGATAATACATGCATTCCATCTTA
* *
14653432 TCCACATC-AAT-AGATAGTACATGCATTCCAT-TTCA
1 TGCACATCAAATAAGATAATACATGCATTCCATCTT-A
14653467 TGCACAT
1 TGCACAT
14653474 GCATTCTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 2 0.05
35 25 0.68
36 3 0.08
38 7 0.19
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.33
Consensus pattern (37 bp):
TGCACATCAAATAAGATAATACATGCATTCCATCTTA
Found at i:14656926 original size:21 final size:21
Alignment explanation
Indices: 14656902--14656941 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14656892 TCTACCACCT
*
14656902 GACCAATAAAGAACCAAAAAA
1 GACCAAGAAAGAACCAAAAAA
*
14656923 GACCAAGAAAGGACCAAAA
1 GACCAAGAAAGAACCAAAA
14656942 GAAACTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.20, G:0.15, T:0.03
Consensus pattern (21 bp):
GACCAAGAAAGAACCAAAAAA
Found at i:14659742 original size:1 final size:1
Alignment explanation
Indices: 14659738--14659837 Score: 56
Period size: 1 Copynumber: 100.0 Consensus size: 1
14659728 GCCTTTTTCC
* * * * * * ** **
14659738 TTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTGTTTTTTATGTTGTTTTTCATTTTTCATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
14659803 TTTTTGTTATTTTGTGTTTTTGTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14659838 ACAAACAAAT
Statistics
Matches: 69, Mismatches: 30, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 69 1.00
ACGTcount: A:0.04, C:0.02, G:0.10, T:0.84
Consensus pattern (1 bp):
T
Found at i:14659787 original size:29 final size:27
Alignment explanation
Indices: 14659738--14659835 Score: 94
Period size: 28 Copynumber: 3.6 Consensus size: 27
14659728 GCCTTTTTCC
14659738 TTTTT-TTTTTTTTTT-TT-TTTTTTG
1 TTTTTGTTTTTTTTTTGTTATTTTTTG
* **
14659762 TTTTTGTTTGTTTTTTATGTTGTTTTTCA
1 TTTTTGTTT-TTTTTT-TGTTATTTTTTG
* *
14659791 TTTTTCATTTTTTTTTTGTTATTTTGTG
1 TTTTT-GTTTTTTTTTTGTTATTTTTTG
14659819 TTTTTGTGTTTTTTTTT
1 TTTTTGT-TTTTTTTTT
14659836 TTACAAACAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
24 5 0.08
25 3 0.05
26 6 0.10
27 2 0.03
28 24 0.41
29 16 0.27
30 3 0.05
ACGTcount: A:0.04, C:0.02, G:0.10, T:0.84
Consensus pattern (27 bp):
TTTTTGTTTTTTTTTTGTTATTTTTTG
Found at i:14660448 original size:23 final size:23
Alignment explanation
Indices: 14660418--14660478 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
14660408 AATTGATATG
14660418 GGCTTAAAATGCTAGCTAATCTA
1 GGCTTAAAATGCTAGCTAATCTA
*
14660441 GGCTTAAAGTGCTAGCTAATCTA
1 GGCTTAAAATGCTAGCTAATCTA
14660464 GGCTTAAAATGCTAG
1 GGCTTAAAATGCTAG
14660479 AACCAACTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (23 bp):
GGCTTAAAATGCTAGCTAATCTA
Found at i:14660520 original size:23 final size:23
Alignment explanation
Indices: 14660494--14660537 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14660484 ACTAATCTAA
* *
14660494 GCTTACAGTGCCAGCTAAACTGG
1 GCTTAAAGTGCCAACTAAACTGG
14660517 GCTTAAAGTGCCAACTAAACT
1 GCTTAAAGTGCCAACTAAACT
14660538 AAGTCGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (23 bp):
GCTTAAAGTGCCAACTAAACTGG
Found at i:14663070 original size:1 final size:1
Alignment explanation
Indices: 14663066--14663165 Score: 56
Period size: 1 Copynumber: 100.0 Consensus size: 1
14663056 TTGTTTGCTA
* * * * * * * * * * *
14663066 TTTTTTTTTATTTGTTTTTTGTTGTTTTATTTTTCTTTTTTTGTTATTTTTTTTTGTTTTGTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
14663131 TTTGTTTGTTTATTTTTTTTCTTTTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14663166 ACAAACAAAT
Statistics
Matches: 67, Mismatches: 32, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.05, C:0.02, G:0.09, T:0.84
Consensus pattern (1 bp):
T
Found at i:14663083 original size:13 final size:13
Alignment explanation
Indices: 14663067--14663165 Score: 62
Period size: 13 Copynumber: 7.5 Consensus size: 13
14663057 TGTTTGCTAT
14663067 TTTTTTTTATTTG
1 TTTTTTTTATTTG
* *
14663080 TTTTTTGTTGTTTTA
1 TTTTTT-TT-ATTTG
*
14663095 TTTTTCTTTTTTTG
1 TTTTT-TTTATTTG
14663109 TTATTTTTT-TTTG
1 TT-TTTTTTATTTG
*
14663122 TTTTGTTGT-TTTG
1 TTTT-TTTTATTTG
* *
14663135 -TTTGTTTATTTT
1 TTTTTTTTATTTG
14663147 TTTTCTTTTATTT-
1 TTTT-TTTTATTTG
14663160 TTTTTT
1 TTTTTT
14663166 ACAAACAAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
11 2 0.03
12 10 0.14
13 26 0.37
14 18 0.26
15 13 0.19
16 1 0.01
ACGTcount: A:0.05, C:0.02, G:0.09, T:0.84
Consensus pattern (13 bp):
TTTTTTTTATTTG
Found at i:14663105 original size:48 final size:47
Alignment explanation
Indices: 14663049--14663165 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 47
14663039 GCCCTTCTCT
14663049 TTTTTTTTTGTTTGCTATTTTTTTTT-ATTTGTT-TTTTG-TTGTTTTA
1 TTTTTTTTT-TTTGCTATTTTTTTTTGATTTGTTGTTTTGTTTG-TTTA
* *
14663095 TTTTTCTTTTTTTGTTATTTTTTTTTGTTTTGTTGTTTTGTTTGTTTA
1 TTTTT-TTTTTTTGCTATTTTTTTTTGATTTGTTGTTTTGTTTGTTTA
*
14663143 TTTTTTTTCTTT--TATTTTTTTTT
1 TTTTTTTTTTTTGCTATTTTTTTTT
14663166 ACAAACAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
45 11 0.17
46 20 0.31
47 16 0.25
48 14 0.22
49 3 0.05
ACGTcount: A:0.05, C:0.03, G:0.09, T:0.83
Consensus pattern (47 bp):
TTTTTTTTTTTTGCTATTTTTTTTTGATTTGTTGTTTTGTTTGTTTA
Found at i:14663106 original size:8 final size:8
Alignment explanation
Indices: 14663048--14663163 Score: 58
Period size: 9 Copynumber: 13.9 Consensus size: 8
14663038 AGCCCTTCTC
14663048 TTTTTTT-
1 TTTTTTTG
*
14663055 TTTGTTTG
1 TTTTTTTG
14663063 CTATTTTTT-
1 -T-TTTTTTG
*
14663072 TTTATTTG
1 TTTTTTTG
14663080 -TTTTTTG
1 TTTTTTTG
* *
14663087 TTGTTTTA
1 TTTTTTTG
*
14663095 TTTTTCTTT
1 TTTTT-TTG
*
14663104 TTTTGTTATT
1 TTTT-TT-TG
14663114 TTTTTTTG
1 TTTTTTTG
*
14663122 TTTTGTTG
1 TTTTTTTG
14663130 TTTTGTTTG
1 TTTT-TTTG
*
14663139 TTTATTTTT
1 TTT-TTTTG
*
14663148 TTTCTTTTA
1 TTT-TTTTG
14663157 TTTTTTT
1 TTTTTTT
14663164 TTACAAACAA
Statistics
Matches: 85, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
7 17 0.20
8 26 0.31
9 29 0.34
10 13 0.15
ACGTcount: A:0.05, C:0.03, G:0.09, T:0.83
Consensus pattern (8 bp):
TTTTTTTG
Found at i:14663122 original size:63 final size:61
Alignment explanation
Indices: 14663049--14663165 Score: 148
Period size: 63 Copynumber: 1.9 Consensus size: 61
14663039 GCCCTTCTCT
* * *
14663049 TTTTTTTTTG-TTTGCTAT-TTTTTTTTATTTGTTTTTTGTTGTTTTATTTTTCTTTTTTTGTTA
1 TTTTTTTTTGTTTTG-T-TGTTTTGTTTATTTATTTTTT-TTCTTTTATTTTT-TTTTTTTGTTA
*
14663112 TTTTTTTTTGTTTTGTTGTTTTGTTTGTTTATTTTTTTTCTTTTATTTTTTTTT
1 TTTTTTTTTGTTTTGTTGTTTTGTTTATTTATTTTTTTTCTTTTATTTTTTTTT
14663166 ACAAACAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
61 4 0.08
62 13 0.27
63 27 0.56
64 4 0.08
ACGTcount: A:0.05, C:0.03, G:0.09, T:0.83
Consensus pattern (61 bp):
TTTTTTTTTGTTTTGTTGTTTTGTTTATTTATTTTTTTTCTTTTATTTTTTTTTTTTGTTA
Found at i:14663130 original size:21 final size:21
Alignment explanation
Indices: 14663049--14663131 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
14663039 GCCCTTCTCT
* * *
14663049 TTTTTTTTTG-TTTGCTATTT
1 TTTTTTTTTGTTTTGTTGTTA
*
14663069 TTTTTTATTTGTTTT-TTGTTG
1 TTTTTT-TTTGTTTTGTTGTTA
* *
14663090 TTTTATTTTTCTTTTTTTGTTA
1 TTTT-TTTTTGTTTTGTTGTTA
14663112 TTTTTTTTTGTTTTGTTGTT
1 TTTTTTTTTGTTTTGTTGTT
14663132 TTGTTTGTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.12
21 32 0.62
22 14 0.27
ACGTcount: A:0.05, C:0.02, G:0.11, T:0.82
Consensus pattern (21 bp):
TTTTTTTTTGTTTTGTTGTTA
Found at i:14663133 original size:17 final size:16
Alignment explanation
Indices: 14663048--14663155 Score: 60
Period size: 15 Copynumber: 6.5 Consensus size: 16
14663038 AGCCCTTCTC
14663048 TTTTTTTTTTGTTTGCTAT
1 TTTTTTTTTTG-TTG-T-T
*
14663067 TTTTTTTTAT-TTGTT
1 TTTTTTTTTTGTTGTT
* * *
14663082 TTTTGTTGTT-TTATT
1 TTTTTTTTTTGTTGTT
*
14663097 TTTCTTTTTTTGTTATTT
1 TTT-TTTTTTTGTT-GTT
14663115 TTTTTTGTTTTGTTGTT
1 TTTTTT-TTTTGTTGTT
* * *
14663132 TTGTTTGTTTATT-TT
1 TTTTTTTTTTGTTGTT
14663147 TTTTCTTTT
1 TTTT-TTTT
14663156 ATTTTTTTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 13
0.72 0.14 0.13
Matches are distributed among these distances:
15 20 0.29
16 14 0.20
17 15 0.21
18 12 0.17
19 9 0.13
ACGTcount: A:0.05, C:0.03, G:0.10, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTTGTTGTT
Found at i:14663163 original size:17 final size:16
Alignment explanation
Indices: 14663046--14663165 Score: 73
Period size: 17 Copynumber: 6.9 Consensus size: 16
14663036 AGAGCCCTTC
*
14663046 TCTTTTTTTTTTGTTT
1 TCTTTTTTTTTTTTTT
*
14663062 GCTATTTTTTTTTATTTGT
1 TCT-TTTTTTTTT-TTT-T
14663081 T-TTTTGTTGTTTTATTTT
1 TCTTTT-TT-TTTT-TTTT
14663099 TCTTTTTTTGTTATTTTT
1 TCTTTTTTT-TT-TTTTT
* *
14663117 T-TTTGTTTTGTTGTTT
1 TCTTT-TTTTTTTTTTT
* *
14663133 TGTTTGTTTATTTTTTT
1 TCTTT-TTTTTTTTTTT
14663150 TCTTTTATTTTTTTTT
1 TCTTTT-TTTTTTTTT
14663166 ACAAACAAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
16 8 0.10
17 41 0.49
18 20 0.24
19 14 0.17
ACGTcount: A:0.05, C:0.03, G:0.09, T:0.82
Consensus pattern (16 bp):
TCTTTTTTTTTTTTTT
Found at i:14663687 original size:23 final size:23
Alignment explanation
Indices: 14663661--14663889 Score: 135
Period size: 23 Copynumber: 10.0 Consensus size: 23
14663651 TATCATCTGG
*
14663661 GTGCTAACTAATCTAAGCTTAAA
1 GTGCTAACTAATCTAGGCTTAAA
* * *
14663684 GTGC-AATTAATATGGGCTTAAA
1 GTGCTAACTAATCTAGGCTTAAA
* * ** * *
14663706 CTGCCAGGTGA-CTTGGGCTTAAA
1 GTGCTAACTAATC-TAGGCTTAAA
** *
14663729 GTGCTAGTTAATCTAGGCTTACA
1 GTGCTAACTAATCTAGGCTTAAA
* * *
14663752 GTGCCAACTAATTTGGGCTTAAA
1 GTGCTAACTAATCTAGGCTTAAA
* * *
14663775 GTACCAACTAAAC-AGGGCTTAAA
1 GTGCTAACTAATCTA-GGCTTAAA
* *
14663798 ATG-TCAATTAATCTAGGCTTAAA
1 GTGCT-AACTAATCTAGGCTTAAA
* *
14663821 GTGCTAGCTAATCTAGACTTAAA
1 GTGCTAACTAATCTAGGCTTAAA
* *
14663844 GTG-TCAACTAATCTGGGCTTATA
1 GTGCT-AACTAATCTAGGCTTAAA
* * *
14663867 TTGCTAGCTAATTTAGGCTTAAA
1 GTGCTAACTAATCTAGGCTTAAA
14663890 ATGCCGACTA
Statistics
Matches: 154, Mismatches: 43, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
22 18 0.12
23 132 0.86
24 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (23 bp):
GTGCTAACTAATCTAGGCTTAAA
Found at i:14663832 original size:69 final size:69
Alignment explanation
Indices: 14663736--14663864 Score: 168
Period size: 69 Copynumber: 1.9 Consensus size: 69
14663726 AAAGTGCTAG
* * * *
14663736 TTAATCTAGGCTTACAGTGCCAACTAATTTGGGCTTAAAGTACCAACTAAACAGGGCTTAAAATG
1 TTAATCTAGGCTTAAAGTGCCAACTAATCTAGACTTAAAGTACCAACTAAACAGGGCTTAAAATG
14663801 TCAA
66 TCAA
* * ** * *
14663805 TTAATCTAGGCTTAAAGTGCTAGCTAATCTAGACTTAAAGTGTCAACTAATCTGGGCTTA
1 TTAATCTAGGCTTAAAGTGCCAACTAATCTAGACTTAAAGTACCAACTAAACAGGGCTTA
14663865 TATTGCTAGC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (69 bp):
TTAATCTAGGCTTAAAGTGCCAACTAATCTAGACTTAAAGTACCAACTAAACAGGGCTTAAAATG
TCAA
Found at i:14663842 original size:46 final size:46
Alignment explanation
Indices: 14663719--14663929 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 46
14663709 CCAGGTGACT
* * * * *
14663719 TGGGCTTAAAGTGCTAGTTAATCTAGGCTTACAGTGCCAACTAATT
1 TGGGCTTAAAGTGCTAGCTAATCTAGGCTTAAAATGTCAACTAATC
* * * * *
14663765 TGGGCTTAAAGTACCAACTAAAC-AGGGCTTAAAATGTCAATTAATC
1 TGGGCTTAAAGTGCTAGCTAATCTA-GGCTTAAAATGTCAACTAATC
* * *
14663811 TAGGCTTAAAGTGCTAGCTAATCTAGACTTAAAGTGTCAACTAATC
1 TGGGCTTAAAGTGCTAGCTAATCTAGGCTTAAAATGTCAACTAATC
* * * * * **
14663857 TGGGCTTATATTGCTAGCTAATTTAGGCTTAAAATGCCGACTAAAA
1 TGGGCTTAAAGTGCTAGCTAATCTAGGCTTAAAATGTCAACTAATC
* *
14663903 TGGACTTAAAGTGCCAGCTAAT-TAGGC
1 TGGGCTTAAAGTGCTAGCTAATCTAGGC
14663930 CTTGGGTGCT
Statistics
Matches: 131, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
45 6 0.05
46 124 0.95
47 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (46 bp):
TGGGCTTAAAGTGCTAGCTAATCTAGGCTTAAAATGTCAACTAATC
Found at i:14663974 original size:23 final size:23
Alignment explanation
Indices: 14663696--14664000 Score: 113
Period size: 23 Copynumber: 13.3 Consensus size: 23
14663686 GCAATTAATA
* * * *
14663696 TGGGCTTAAACTGCCAGGTGACT
1 TGGGCTTAAAGTGCCAGCTAAAT
* *
14663719 TGGGCTTAAAGTGCTAG-TTAAT
1 TGGGCTTAAAGTGCCAGCTAAAT
* * * *
14663741 CTAGGCTTACAGTGCCAACTAATT
1 -TGGGCTTAAAGTGCCAGCTAAAT
* * *
14663765 TGGGCTTAAAGTACCAACTAAAC
1 TGGGCTTAAAGTGCCAGCTAAAT
* * * * *
14663788 AGGGCTTAAAATGTCA-ATTAAT
1 TGGGCTTAAAGTGCCAGCTAAAT
* *
14663810 CTAGGCTTAAAGTGCTAGCT-AAT
1 -TGGGCTTAAAGTGCCAGCTAAAT
* * * *
14663833 CTAGACTTAAAGTGTCAACT-AAT
1 -TGGGCTTAAAGTGCCAGCTAAAT
* * * *
14663856 CTGGGCTTATATTGCTAGCTAATT
1 -TGGGCTTAAAGTGCCAGCTAAAT
* * *
14663880 TAGGCTTAAAATGCC-GACTAAAA
1 TGGGCTTAAAGTGCCAG-CTAAAT
*
14663903 TGGACTTAAAGTGCCAGCT-AAT
1 TGGGCTTAAAGTGCCAGCTAAAT
* ** * *
14663925 TAGGCCTT-GGGTGCTAGCT-AGT
1 T-GGGCTTAAAGTGCCAGCTAAAT
*
14663947 CTGGGCTTATAGTGCCAGCTAAAT
1 -TGGGCTTAAAGTGCCAGCTAAAT
** *
14663971 TGGGCCAAAAGTGCTAGCTAAAT
1 TGGGCTTAAAGTGCCAGCTAAAT
*
14663994 TAGGCTT
1 TGGGCTT
14664001 TGGCTGCCAG
Statistics
Matches: 204, Mismatches: 67, Indels: 22
0.70 0.23 0.08
Matches are distributed among these distances:
22 25 0.12
23 170 0.83
24 9 0.04
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (23 bp):
TGGGCTTAAAGTGCCAGCTAAAT
Found at i:14664032 original size:69 final size:68
Alignment explanation
Indices: 14663910--14664037 Score: 159
Period size: 69 Copynumber: 1.9 Consensus size: 68
14663900 AAATGGACTT
* * * * *
14663910 AAAGTGCCAGCTAATTAGGCCTTGGGTGCTAGCTAGTCTGGGCTTATAGTGCCAGCTAAATTGGG
1 AAAGTGCCAGCTAATTAGGCCTTGGCTGCCAGCTAATCTGGACTTATAGTGCCAACTAAATTGGG
14663975 CCA
66 CCA
* * *
14663978 AAAGTGCTAGCTAAATTAGGCTTTGGCTGCCAGCTAATCTGGACTT-TCGATGCCAACTAA
1 AAAGTGCCAGCT-AATTAGGCCTTGGCTGCCAGCTAATCTGGACTTATAG-TGCCAACTAA
14664038 TCTAGACTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
68 13 0.26
69 37 0.74
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (68 bp):
AAAGTGCCAGCTAATTAGGCCTTGGCTGCCAGCTAATCTGGACTTATAGTGCCAACTAAATTGGG
CCA
Found at i:14664268 original size:16 final size:15
Alignment explanation
Indices: 14664227--14664279 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
14664217 ATCCCTCTAA
* *
14664227 TTTTTTTGCTATTTT
1 TTTTTTTTCTCTTTT
14664242 TATTCTTTTTCTCTTTCT
1 T-TT-TTTTTCTCTTT-T
14664260 TTTTTTTTCTCTTTT
1 TTTTTTTTCTCTTTT
14664275 TTTTT
1 TTTTT
14664280 CATTTCACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 11 0.33
18 2 0.06
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTTTCTCTTTT
Found at i:14664582 original size:25 final size:26
Alignment explanation
Indices: 14664518--14664583 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
14664508 TGTAGATGTG
14664518 ATGATGCAAATGCAAATTGCTTTCTT
1 ATGATGCAAATGCAAATTGCTTTCTT
*
14664544 ATGGTGCAAATGCAAA-TGTCTTT-TT
1 ATGATGCAAATGCAAATTG-CTTTCTT
* *
14664569 TTGATGCACATGCAA
1 ATGATGCAAATGCAA
14664584 GTGATACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.46
26 19 0.54
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (26 bp):
ATGATGCAAATGCAAATTGCTTTCTT
Found at i:14667348 original size:143 final size:141
Alignment explanation
Indices: 14667127--14667493 Score: 343
Period size: 143 Copynumber: 2.6 Consensus size: 141
14667117 ATGAAATCAC
* * * * *
14667127 AATCTGGAGCTTATCATGAAAAACTAACCTCGAGAATGTCAAATTACAAAAATATTCCTAAATGA
1 AATCTGGAGCTTTTTATGAAAAACCAACCTCGAGAACGTCAAATTACAAAAATA-TCCTAAAAGA
*
14667192 TATTTTAGTAATTTTAACCCTTCTGAGGTGTGATCC-GAGTTTTGACA-CATCAAAATTTATGAA
65 TATTTTAGTAATTTTAACCCTTCTGAGGTGTGA-CCAG-GTTTTGA-AGCATCAAAAATTATGAA
*
14667255 ATAATAT-AAAAGTAT
127 ATAATATCAAAA-CAT
* * *
14667270 GATCTGGAGATTTTTATGAAAAACCAACCTC-AGGAACGTTAAATTACAAAAATA-CCATTAAAA
1 AATCTGGAGCTTTTTATGAAAAACCAACCTCGA-GAACGTCAAATTACAAAAATATCC--TAAAA
* * * * * * * *
14667333 GGTATTTTGGTAATTTTAATCTTTTTGATGTTTGACCATGGTTTTTAATGCATCAAAAATTATGA
63 GATATTTTAGTAATTTTAACCCTTCTGAGGTGTGACCA-GGTTTTGAA-GCATCAAAAATTATGA
14667398 AATAATATCAAAACAT
126 AATAATATCAAAACAT
* * * * ** *
14667414 AATCTGGAGCTTTTTATG-AAAACCAATCTTGAAAATGTCAAATTATGAAAATACTCCTAAAAGG
1 AATCTGGAGCTTTTTATGAAAAACCAACCTCGAGAACGTCAAATTACAAAAATA-TCCTAAAAGA
*
14667478 CATTTT-GATAATTTTA
65 TATTTTAG-TAATTTTA
14667494 CCACTTTCGA
Statistics
Matches: 184, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
141 2 0.01
142 5 0.03
143 129 0.70
144 42 0.23
145 6 0.03
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (141 bp):
AATCTGGAGCTTTTTATGAAAAACCAACCTCGAGAACGTCAAATTACAAAAATATCCTAAAAGAT
ATTTTAGTAATTTTAACCCTTCTGAGGTGTGACCAGGTTTTGAAGCATCAAAAATTATGAAATAA
TATCAAAACAT
Found at i:14667614 original size:10 final size:10
Alignment explanation
Indices: 14667599--14667623 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14667589 GGGTTTTGAG
14667599 TTGACCAAGT
1 TTGACCAAGT
14667609 TTGACCAAGT
1 TTGACCAAGT
14667619 TTGAC
1 TTGAC
14667624 TGATTCTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (10 bp):
TTGACCAAGT
Found at i:14671312 original size:83 final size:83
Alignment explanation
Indices: 14671196--14671361 Score: 264
Period size: 83 Copynumber: 2.0 Consensus size: 83
14671186 AATAAAATTG
* *
14671196 GTATTCTACATTAATCATGCTAATTGTGTACCTTTCTTAATTTCATATATTGAGTAGTCAGTCAC
1 GTATTCTACATTAATCATGCTAATTGTGTACCTTTCTTAATTTCACATATTGAATAGTCAGTCA-
14671261 ATCTAGAGAAACTCTAAAT
65 ATCTAGAGAAACTCTAAAT
* *
14671280 GTATTCTACATT-GTCATGCTAATTAT-TGACCTTTCTTAATTTCACATATTGAATAGTCAGTCA
1 GTATTCTACATTAATCATGCTAATTGTGT-ACCTTTCTTAATTTCACATATTGAATAGTCAGTCA
14671343 ATCTAGAGAAACTCTAAAT
65 ATCTAGAGAAACTCTAAAT
14671362 TGTTAATAAG
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
82 20 0.26
83 45 0.58
84 12 0.16
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (83 bp):
GTATTCTACATTAATCATGCTAATTGTGTACCTTTCTTAATTTCACATATTGAATAGTCAGTCAA
TCTAGAGAAACTCTAAAT
Found at i:14672490 original size:15 final size:17
Alignment explanation
Indices: 14672457--14672490 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14672447 CTTGTATGGT
14672457 TACTATTTCTTGCTTAA
1 TACTATTTCTTGCTTAA
14672474 TACTATTT-TTG-TTAA
1 TACTATTTCTTGCTTAA
14672489 TA
1 TA
14672491 GACACTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 3 0.18
17 8 0.47
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (17 bp):
TACTATTTCTTGCTTAA
Found at i:14678406 original size:23 final size:22
Alignment explanation
Indices: 14678380--14678435 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
14678370 TTATGCAAAT
14678380 TTCAATTTCAATTTTATTTTAAA
1 TTCAATTT-AATTTTATTTTAAA
** * *
14678403 TTCAAGTTTTGTTTTGTTTTCAA
1 TTCAA-TTTAATTTTATTTTAAA
14678426 TTCAATTTAA
1 TTCAATTTAA
14678436 GCTTTTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
22 3 0.12
23 20 0.77
24 3 0.12
ACGTcount: A:0.29, C:0.09, G:0.05, T:0.57
Consensus pattern (22 bp):
TTCAATTTAATTTTATTTTAAA
Found at i:14681982 original size:80 final size:80
Alignment explanation
Indices: 14681844--14682003 Score: 257
Period size: 80 Copynumber: 2.0 Consensus size: 80
14681834 TGAGTTACTT
* * * *
14681844 TTGCTTTGTTTTTGGTAGAATAACCTTTTTTTTACTCCTAATGTGCCTAATTTTATGCTTTGTAG
1 TTGCTTTGTTTTTGGTAAAATAACCTTCTTTTTACTCCTAATGTGCCTAATTTGATGCTTTGAAG
14681909 AAAATACTAAAGAAA
66 AAAATACTAAAGAAA
* * *
14681924 TTGCTTTGTTTTTGGTAAAATAATCTTCTTTTTACTCTTAATGTGCTTAATTTGATGCTTTGAAG
1 TTGCTTTGTTTTTGGTAAAATAACCTTCTTTTTACTCCTAATGTGCCTAATTTGATGCTTTGAAG
14681989 AAAATACTAAAGAAA
66 AAAATACTAAAGAAA
14682004 ATATTAAATC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (80 bp):
TTGCTTTGTTTTTGGTAAAATAACCTTCTTTTTACTCCTAATGTGCCTAATTTGATGCTTTGAAG
AAAATACTAAAGAAA
Found at i:14689856 original size:29 final size:29
Alignment explanation
Indices: 14689819--14689878 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
14689809 AGTTAATAGA
* *
14689819 TTTATAGTTCAAATACCACATTAAAGATT
1 TTTAAAGTTCAAATACCACATTAAACATT
* *
14689848 TTTAAAGTTTAGATACCACATTAAACATT
1 TTTAAAGTTCAAATACCACATTAAACATT
14689877 TT
1 TT
14689879 ATTATAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (29 bp):
TTTAAAGTTCAAATACCACATTAAACATT
Found at i:14694285 original size:31 final size:31
Alignment explanation
Indices: 14694193--14694295 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
14694183 TATTCTTTTA
* *
14694193 TTGTATTTAAATAAG-TCTTCAA-TCTTTAAT
1 TTGTATCTAAATAAGCTCTTAAACT-TTTAAT
* * *
14694223 TTGCACCTAAATAAGCCCTTAAAC-TTTAAT
1 TTGTATCTAAATAAGCTCTTAAACTTTTAAT
14694253 TTGTATCTAAATAAGCTCTTAAACTTTTAAT
1 TTGTATCTAAATAAGCTCTTAAACTTTTAAT
14694284 TTGTATCATAAA
1 TTGTATC-TAAA
14694296 CCCCTAACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
30 39 0.64
31 18 0.30
32 4 0.07
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (31 bp):
TTGTATCTAAATAAGCTCTTAAACTTTTAAT
Found at i:14701203 original size:22 final size:22
Alignment explanation
Indices: 14701168--14701209 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14701158 ACATTATAAT
14701168 AATATTAATAATTTATAAAATA
1 AATATTAATAATTTATAAAATA
*
14701190 AATATGTAAT-ATTTTTAAAA
1 AATAT-TAATAATTTATAAAA
14701210 ATTAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATTAATAATTTATAAAATA
Found at i:14701241 original size:21 final size:22
Alignment explanation
Indices: 14701203--14701253 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
14701193 ATGTAATATT
*
14701203 TTTAAAAATTAATTAAATAA-A
1 TTTAAAAATTAATGAAATAATA
14701224 TTTAAAAATATAA-GAAATAATA
1 TTTAAAAAT-TAATGAAATAATA
14701246 TTATAAAA
1 TT-TAAAA
14701254 TTTTCATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 15 0.58
22 6 0.23
23 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TTTAAAAATTAATGAAATAATA
Found at i:14702307 original size:80 final size:80
Alignment explanation
Indices: 14702140--14702296 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 80
14702130 ATAGTTTGAT
* * *
14702140 TAATCAAAATTCATTTATGAGTCATCTAATTTATTTTTAAATTAAATTCAAATAATTTAGAGATG
1 TAATCAAAATTCATTTATGAGTCATCTAATTTATCTTTAAATTAAATTAAAATAATTTAGAAATG
14702205 AATCTAAATTTTATC
66 AATCTAAATTTTATC
* * ** * *
14702220 TAATCAAAATTCATTTATGAGTTATTTTCTTTATCTTTAAATTAAATTAAAATTATTTATAAAT-
1 TAATCAAAATTCATTTATGAGTCATCTAATTTATCTTTAAATTAAATTAAAATAATTTAGAAATG
*
14702284 ATATTTAAATTTT
66 A-ATCTAAATTTT
14702297 TGACAATCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
79 1 0.02
80 65 0.98
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (80 bp):
TAATCAAAATTCATTTATGAGTCATCTAATTTATCTTTAAATTAAATTAAAATAATTTAGAAATG
AATCTAAATTTTATC
Found at i:14706615 original size:30 final size:30
Alignment explanation
Indices: 14706581--14706641 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
14706571 CAAAAAAATA
14706581 TTTTAAATAATCTTTTTATATTTTAGGATT
1 TTTTAAATAATCTTTTTATATTTTAGGATT
*
14706611 TTTTAAATATTCTTTTTATATTTTAGGATT
1 TTTTAAATAATCTTTTTATATTTTAGGATT
14706641 T
1 T
14706642 AAGGTTTAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (30 bp):
TTTTAAATAATCTTTTTATATTTTAGGATT
Found at i:14706718 original size:122 final size:120
Alignment explanation
Indices: 14706492--14706721 Score: 318
Period size: 121 Copynumber: 1.9 Consensus size: 120
14706482 AAAAAATAGC
* *
14706492 TTAAATAATCTTTTTATATTTTAGGGTTTGGGTTTAGGATTAATATTTTTATAAAAGAATTATTT
1 TTAAATAATCTTTTTATATTTTAGGATTTAGGTTTAGGATTAATATTTTTATAAAAGAATTATTT
* *
14706557 AAGGCGTTTTTATACAAAAAAATATTTTAAATAATCTTTTTATATTTTAGGATTTT
66 AAGGCGTTTTTATAC-AAAAAACATCTTAAATAATCTTTTTATATTTTAGGATTTT
* * * *
14706613 TTAAATATTCTTTTTATATTTTAGGATTTAAGGTTTAGGGTTAATATTTTTGTAAAAGGATTATT
1 TTAAATAATCTTTTTATATTTTAGGATTT-AGGTTTAGGATTAATATTTTTATAAAAGAATTATT
* * * *
14706678 TAAGGCATTTTTTGTAC-AAAAACGTCTTAAATAATCCTTTTATA
65 TAAGGC-GTTTTTATACAAAAAACATCTTAAATAATCTTTTTATA
14706722 AATTAAAGAA
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
121 50 0.53
122 37 0.39
123 8 0.08
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (120 bp):
TTAAATAATCTTTTTATATTTTAGGATTTAGGTTTAGGATTAATATTTTTATAAAAGAATTATTT
AAGGCGTTTTTATACAAAAAACATCTTAAATAATCTTTTTATATTTTAGGATTTT
Found at i:14706851 original size:47 final size:47
Alignment explanation
Indices: 14706761--14706854 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
14706751 AATACAAAAA
* *
14706761 AATAAAATGATTATTTAAGGCGTTTCTGCACATAAAATGTCTTAAAT
1 AATAAAATGATTATTTAAGGCGTTTATGCACATAAAATATCTTAAAT
* * *
14706808 AATAAAATGATTATTTAAGGGGTTTTATGTACA-GAAATATCTTAAAT
1 AATAAAATGATTATTTAAGGCG-TTTATGCACATAAAATATCTTAAAT
14706855 GATCATTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
47 33 0.80
48 8 0.20
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.37
Consensus pattern (47 bp):
AATAAAATGATTATTTAAGGCGTTTATGCACATAAAATATCTTAAAT
Found at i:14711501 original size:10 final size:11
Alignment explanation
Indices: 14711464--14711501 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
14711454 TCTCTTTTCT
14711464 TTTTTC-TTAG
1 TTTTTCTTTAG
14711474 CTCTTTTCTTTAG
1 -T-TTTTCTTTAG
14711487 TTTTTCTTTAG
1 TTTTTCTTTAG
14711498 TTTT
1 TTTT
14711502 AGTTATTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 15 0.60
12 6 0.24
13 4 0.16
ACGTcount: A:0.08, C:0.13, G:0.08, T:0.71
Consensus pattern (11 bp):
TTTTTCTTTAG
Found at i:14714722 original size:16 final size:16
Alignment explanation
Indices: 14714701--14714770 Score: 62
Period size: 16 Copynumber: 4.7 Consensus size: 16
14714691 TTTTTTAAAT
14714701 TATTTATTTAATTTTA
1 TATTTATTTAATTTTA
14714717 TATTTA--T-A---TA
1 TATTTATTTAATTTTA
* * *
14714727 TATTTGTATACTTTTA
1 TATTTATTTAATTTTA
14714743 TATTTATTTAATTTTA
1 TATTTATTTAATTTTA
14714759 TATTTATATTAA
1 TATTTAT-TTAA
14714771 AAATAATATT
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
10 7 0.17
12 1 0.02
13 1 0.02
14 1 0.02
16 28 0.67
17 4 0.10
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (16 bp):
TATTTATTTAATTTTA
Found at i:14714797 original size:22 final size:24
Alignment explanation
Indices: 14714753--14714806 Score: 85
Period size: 22 Copynumber: 2.3 Consensus size: 24
14714743 TATTTATTTA
14714753 ATTTTATATTTATATTAAAAATAAT
1 ATTTTATATTTATA-TAAAAATAAT
14714778 ATTTTATATTT-TA-AAAAATAAT
1 ATTTTATATTTATATAAAAATAAT
14714800 ATTTTAT
1 ATTTTAT
14714807 TAATTTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 16 0.55
24 2 0.07
25 11 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTTTATATTTATATAAAAATAAT
Found at i:14718305 original size:23 final size:23
Alignment explanation
Indices: 14718279--14718324 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14718269 ATAAGGTATC
14718279 TTAGAGATAAAGAGGATGTTCAA
1 TTAGAGATAAAGAGGATGTTCAA
14718302 TTAGAGATAAAGAGGATGTTCAA
1 TTAGAGATAAAGAGGATGTTCAA
14718325 GGAATATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.26
Consensus pattern (23 bp):
TTAGAGATAAAGAGGATGTTCAA
Found at i:14732159 original size:130 final size:129
Alignment explanation
Indices: 14731787--14732401 Score: 459
Period size: 130 Copynumber: 4.7 Consensus size: 129
14731777 GCTAATATGT
* * * * * ** *
14731787 GATTATTCAGTAAATAATTATAAGAAAATGGGGTTTTTTTCGTAATTATGGTACAAGGGTATAAT
1 GATTATTTAGTAAATAATTATAAGAGAA-GTGG-TATTTTCGTAATTATGATATGAGGGCATAAT
* * *
14731852 TGT-TAATTTAG-C-CATGTTTAAACTTTC-TATTATACAATGAAAAATATATTTTGGTAATTTC
64 AGTCT-ATTTAGCCACATG-TT-AA-TTTCTTATCATATAATGAAAAATATATTTTGGTAATTTC
14731913 ATAGG
125 ATAGG
* * * ** * *
14731918 AGATTATTTAGGAAATAATTATAAAACAA---GTATTTTTATAATTAT-AGTATGAGTGCATAAA
1 -GATTATTTAGTAAATAATTATAAGAGAAGTGGTATTTTCGTAATTATGA-TATGAGGGCATAAT
* * * * * * *
14731979 AGTCTATTTGGCCAAATGTCAATTTCCTATCATATATTGAGAAATATATTTTGGGAATTTCATAG
64 AGTCTATTTAGCCACATGTTAATTTCTTATCATATAATGAAAAATATATTTTGGTAATTTCATAG
14732044 TG
129 -G
* * *
14732046 GATTATTTAGTAAATAATTGTCAGAGAAGTGGTATTTTCGTAATTATGAAATGAGGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAAGTGGTATTTTCGTAATTATGATATGAGGGCATAATAG
* * *
14732111 T-TAATTTAGCCACATGTTAATTTCTTATCTTATAATGAAAAATGTATTTTGGTAACTTT-TTCA
66 TCT-ATTTAGCCACATGTTAATTTCTTATCATATAATGAAAAATATATTTTGGTAA-TTTCAT-A
14732174 GG
128 GG
* * * * * *
14732176 GATTATTTACTAAATAATTATAAGAGAAAG-GGTGTTTTTTGTAAATATTG-TATGAGAGCAAAA
1 GATTATTTAGTAAATAATTATAAGAG-AAGTGGT-ATTTTCGTAATTA-TGATATGAGGGCATAA
* * * * * ** * * **
14732239 TAGTCTATTTGGCCACAAGTGAATTTGTTATCATATAATGGAAAGGATATTATAGTAATTTTTTA
63 TAGTCTATTTAGCCACATGTTAATTTCTTATCATATAATGAAAAATATATTTTGGTAATTTCAT-
**
14732304 AAA
127 AGG
*
14732307 GATTATTTAGTAAATAATTATAAGAGAA-TGAGTATTTTCCTAATTAT-AGTATGAGGGCATAAT
1 GATTATTTAGTAAATAATTATAAGAGAAGTG-GTATTTTCGTAATTATGA-TATGAGGGCATAAT
* * * *
14732370 AGTCCATTT-GTTCATATGTAAATTTCTTATCA
64 AGTCTATTTAG-CCACATGTTAATTTCTTATCA
14732402 GATAGGTTCC
Statistics
Matches: 382, Mismatches: 78, Indels: 48
0.75 0.15 0.09
Matches are distributed among these distances:
126 4 0.01
127 86 0.23
128 5 0.01
129 6 0.02
130 150 0.39
131 104 0.27
132 27 0.07
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (129 bp):
GATTATTTAGTAAATAATTATAAGAGAAGTGGTATTTTCGTAATTATGATATGAGGGCATAATAG
TCTATTTAGCCACATGTTAATTTCTTATCATATAATGAAAAATATATTTTGGTAATTTCATAGG
Found at i:14732353 original size:261 final size:256
Alignment explanation
Indices: 14731787--14732372 Score: 600
Period size: 261 Copynumber: 2.3 Consensus size: 256
14731777 GCTAATATGT
* * * * ** *
14731787 GATTATTCAGTAAATAATTATAAGAAAATGGGGTTTTTTTCGTAATTATGGTACAAGGGTATAAT
1 GATTATTTAGTAAATAATTATAAGAGAAT--GG-TATTTTCGTAATTATGATATGAGGGCATAAT
*
14731852 TGTTAATTTAGCCATGTTTAAACTTTCTATTATACAATGAAAAATATATTTTGGTAATTTCATAG
63 AGTTAATTTAGCCATGTTTAAACTTTCTATTATACAATGAAAAATATATTTTGGTAATTTCATAG
* * *
14731917 GAGATTATTTAGGAAATAATTATAAAACAAGTATTTTTATAATTATAGTATGAGTGCATAAAAGT
128 GAGATTATTTACGAAATAATTATAAAACAAGTATTTTTATAAATATAGTATGAGAGCATAAAAGT
* * * * ***
14731982 CTATTTGGCCAAATGTCAATTTCCTATCATATATTGAGAAATATATTTTGGGAATTTCATAGTG
193 CTATTTGGCCAAATGTCAATTTCCTATCATATAATGAGAAAGATATTATAGGAATTTCATAAAA
* * *
14732046 GATTATTTAGTAAATAATTGTCAGAGAAGTGGTATTTTCGTAATTATGAAATGAGGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAA-TGGTATTTTCGTAATTATGATATGAGGGCATAATAG
* * *
14732111 TTAATTTAGCCACATG-TT-AA-TTTCTTATCT-TATAATGAAAAATGTATTTTGGTAACTTT-T
65 TTAATTTAG-C-CATGTTTAAACTTTC-TAT-TATACAATGAAAAATATATTTTGGTAA-TTTCA
* * * *
14732171 TCAGG-GATTATTTACTAAATAATTATAAGAGA-AAGGGTGTTTTTTGTAAATATTGTATGAGAG
125 T-AGGAGATTATTTACGAAATAATTATAA-A-ACAA--GT-ATTTTTATAAATATAGTATGAGAG
* ** *
14732234 CA-AAATAGTCTATTTGGCCACAA-GTGAATTTGTTATCATATAATG-GAAAGGATATTATAGTA
184 CATAAA-AGTCTATTTGGCCA-AATGTCAATTTCCTATCATATAATGAGAAA-GATATTATAGGA
**
14732296 ATTTTTTAAAA
246 ATTTCATAAAA
*
14732307 GATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTCCTAATTAT-AGTATGAGGGCATAATA
1 GATTATTTAGTAAATAATTATAAGAGAATG-GTATTTTCGTAATTATGA-TATGAGGGCATAATA
14732371 GT
64 GT
14732373 CCATTTGTTC
Statistics
Matches: 272, Mismatches: 38, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
256 4 0.01
257 85 0.31
258 15 0.06
259 29 0.11
260 13 0.05
261 124 0.46
262 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (256 bp):
GATTATTTAGTAAATAATTATAAGAGAATGGTATTTTCGTAATTATGATATGAGGGCATAATAGT
TAATTTAGCCATGTTTAAACTTTCTATTATACAATGAAAAATATATTTTGGTAATTTCATAGGAG
ATTATTTACGAAATAATTATAAAACAAGTATTTTTATAAATATAGTATGAGAGCATAAAAGTCTA
TTTGGCCAAATGTCAATTTCCTATCATATAATGAGAAAGATATTATAGGAATTTCATAAAA
Found at i:14732449 original size:13 final size:14
Alignment explanation
Indices: 14732424--14732458 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14732414 TTGTTTTGCA
14732424 AAAAATGACTTTTG
1 AAAAATGACTTTTG
*
14732438 AAAAATGATTTTTG
1 AAAAATGACTTTTG
14732452 AAAAATG
1 AAAAATG
14732459 TTTACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.34
Consensus pattern (14 bp):
AAAAATGACTTTTG
Found at i:14732456 original size:15 final size:15
Alignment explanation
Indices: 14732417--14732456 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
14732407 GTTCCATTTG
14732417 TTTTGCAAAAAATGAC
1 TTTTG-AAAAAATGAC
*
14732433 TTTTG-AAAAATGAT
1 TTTTGAAAAAATGAC
14732447 TTTTGAAAAA
1 TTTTGAAAAA
14732457 TGTTTACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 13 0.59
15 4 0.18
16 5 0.23
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (15 bp):
TTTTGAAAAAATGAC
Found at i:14732760 original size:23 final size:22
Alignment explanation
Indices: 14732731--14732831 Score: 114
Period size: 23 Copynumber: 4.4 Consensus size: 22
14732721 TATTATTCTT
*
14732731 TATATTATTTATCAATATATCAA
1 TATATTATTTATTAATATAT-AA
*
14732754 TATATTATTTATTAATATATTA
1 TATATTATTTATTAATATATAA
14732776 TAGTATTATTTATTAATATATTAA
1 TA-TATTATTTATTAATATA-TAA
*
14732800 TATATTATAATATT-ATATATTAA
1 TATATTAT-TTATTAATATA-TAA
*
14732823 TATACTATT
1 TATATTATT
14732832 ATTTATAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
22 3 0.04
23 58 0.84
24 8 0.12
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (22 bp):
TATATTATTTATTAATATATAA
Found at i:14732774 original size:8 final size:7
Alignment explanation
Indices: 14732753--14732838 Score: 77
Period size: 8 Copynumber: 11.7 Consensus size: 7
14732743 CAATATATCA
14732753 ATATATT
1 ATATATT
*
14732760 ATTTATT
1 ATATATT
14732767 AATATATT
1 -ATATATT
14732775 ATAGTATT
1 ATA-TATT
*
14732783 ATTTATT
1 ATATATT
14732790 AATATATT
1 -ATATATT
14732798 AATATATT
1 -ATATATT
14732806 ATAATATT
1 AT-ATATT
14732814 ATATATT
1 ATATATT
*
14732821 AATATACT
1 -ATATATT
14732829 AT-TATT
1 ATATATT
14732835 -TATA
1 ATATA
14732839 AGTAAAATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
5 1 0.01
6 5 0.07
7 22 0.33
8 39 0.58
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (7 bp):
ATATATT
Found at i:14732788 original size:46 final size:49
Alignment explanation
Indices: 14732741--14732837 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 49
14732731 TATATTATTT
* * *
14732741 ATCAATATATCAATATATTAT-TTATTA-ATA-TATTATAGTATTATTT
1 ATCAATATATCAATATATTATAATATTATATATTAATATACTATTATTT
* *
14732787 ATTAATATATTAATATATTATAATATTATATATTAATATACTATTATTT
1 ATCAATATATCAATATATTATAATATTATATATTAATATACTATTATTT
14732836 AT
1 AT
14732838 AAGTAAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
46 19 0.44
47 5 0.12
48 3 0.07
49 16 0.37
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (49 bp):
ATCAATATATCAATATATTATAATATTATATATTAATATACTATTATTT
Found at i:14732798 original size:31 final size:31
Alignment explanation
Indices: 14732753--14732839 Score: 115
Period size: 31 Copynumber: 2.9 Consensus size: 31
14732743 CAATATATCA
* *
14732753 ATATATT-ATTTATTAATATATTATAGTATT
1 ATATATTAATATATTAATATATTATAATATT
*
14732783 ATTTATTAATATATTAATATATTATAATATT
1 ATATATTAATATATTAATATATTATAATATT
* *
14732814 ATATATTAATATACTATTAT-TTATAA
1 ATATATTAATATATTAATATATTATAA
14732840 GTAAAATTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.24
31 38 0.76
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (31 bp):
ATATATTAATATATTAATATATTATAATATT
Found at i:14733041 original size:14 final size:14
Alignment explanation
Indices: 14733022--14733048 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14733012 GAAAATGTGA
14733022 AAATAATTTTTTGG
1 AAATAATTTTTTGG
14733036 AAATAATTTTTTG
1 AAATAATTTTTTG
14733049 CAAAACAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (14 bp):
AAATAATTTTTTGG
Found at i:14733346 original size:129 final size:128
Alignment explanation
Indices: 14733077--14733687 Score: 504
Period size: 129 Copynumber: 4.7 Consensus size: 128
14733067 AATTGAAGGA
* * * * * *
14733077 GTATTTTTGTAA-TTCAATACGGATTATTTAGTAAATAATTATTAGAGAAGGGATATTTTTGTAA
1 GTATTTTAGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAGAGAAGAG-TATTTTCGTAA
* * * ** * *** * * * *
14733141 TT-TGGTATGAGGGCATAATAGTCCATTTGGTTGCATTTCAATTTCTTATCTTATAATGGAAAGG
65 TTAAGATATGAGAGCATAATAGTTAATTTTGCCACATGTCAATTACTTATCATATAATGCAAA-G
* *
14733205 GTATTTTGGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAGAGAAGAGTATTTTCATAAT
1 GTATTTTAGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAGAGAAGAGTATTTTCGTAAT
* * * *
14733270 TAAGATATGAGGGCGTAATAGTTAATTTTGCCACATGTCTATTACTTTATCATATATTGCAAAG
66 TAAGATATGAGAGCATAATAGTTAATTTTGCCACATGTCAATTAC-TTATCATATAATGCAAAG
* * *
14733334 GT-TATTTAGTAATTTC-ATAGGTAATTATTTAGTAAATAATTATAA-AAAAG-GTATAATTTCG
1 GTAT-TTTAGTAATTTCAAAAGG-GATTATTTAGTAAATAATTATAAGAGAAGAGTAT--TTTCG
* * * ** ** ** *
14733395 TAATTATGTTATGAGAGCTTAATAGTTAATTTAACCACATAACAATTTTTTATCATATAATGGAA
62 TAATTAAGATATGAGAGCATAATAGTTAATTTTGCCACATGTCAATTACTTATCATATAATGCAA
14733460 ATG
127 A-G
* ** * *
14733463 ATATTTGGGTAATTTTATAAA-GGATTATTTAGTAAATAATTATAAAAGAA-AGGTATTTTCGTA
1 GTATTTTAGTAATTTCA-AAAGGGATTATTTAGTAAATAATTATAAGAGAAGA-GTATTTTCGTA
* * * * * *
14733526 ATTAA-AGTATGAGAACATAATAGTTAATTTTGTCATATGTCTATTACTTGTCATATATTGCAAA
64 ATTAAGA-TATGAGAGCATAATAGTTAATTTTGCCACATGTCAATTACTTATCATATAATGC-AA
14733590 AG
127 AG
** * * *
14733592 GTATTTTAGTAATTT-AATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTTG
1 GTATTTTAGTAATTTCAA-AAGGGATTATTTAGTAAATAATTATAAGAGAA-GAGTAT--TTTCG
* *
14733656 TAATTATGGTATGAGAGCATAATAGTTAATTT
62 TAATTAAGATATGAGAGCATAATAGTTAATTT
14733688 CTTATCATAT
Statistics
Matches: 385, Mismatches: 75, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
127 5 0.01
128 49 0.13
129 267 0.69
130 26 0.07
131 6 0.02
132 32 0.08
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (128 bp):
GTATTTTAGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAGAGAAGAGTATTTTCGTAAT
TAAGATATGAGAGCATAATAGTTAATTTTGCCACATGTCAATTACTTATCATATAATGCAAAG
Found at i:14733556 original size:258 final size:261
Alignment explanation
Indices: 14733077--14733687 Score: 760
Period size: 258 Copynumber: 2.4 Consensus size: 261
14733067 AATTGAAGGA
* * * * * * * *
14733077 GTATTTTTGTAATTCAATACG-GATTATTTAGTAAATAATTATTAGAGAAGG-G-ATATTTTTGT
1 GTATTTTAGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTCGT
* ** ***** ** *
14733139 AATT-TGGTATGAGGGCATAATAGTCCATTTGGTTGCATTTCAATTTCTTATCTTATAATGGAAA
66 AATTATGGTATGAGAGCATAATAGTTAATTTAACCACATAACAATTTCTTATCATATAATGGAAA
* * *
14733203 GGGTATTTTGGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAGAGAAGAGTATTTTCATA
131 GGATATTTGGGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAAAGAAGAGTATTTTCATA
** *
14733268 ATTAAGATATGAGGGCGTAATAGTTAATTTTGCCACATGTCTATTACTTTATCATATATTGC-AA
196 ATTAAGATATGAGAACATAATAGTTAATTTTGCCACATGTCTATTAC-TTATCATATATTGCAAA
14733332 AG
260 AG
* *
14733334 GT-TATTTAGTAATTTCATAGGTAATTATTTAGTAAATAATTATAA-AAAA-G-GTATAATTTCG
1 GTAT-TTTAGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTCG
* * *
14733395 TAATTATGTTATGAGAGCTTAATAGTTAATTTAACCACATAACAATTTTTTATCATATAATGGAA
65 TAATTATGGTATGAGAGCATAATAGTTAATTTAACCACATAACAATTTCTTATCATATAATGGAA
* *
14733460 ATGATATTTGGGTAATTTTATAAA-GGATTATTTAGTAAATAATTATAAAAGAA-AGGTATTTTC
130 AGGATATTTGGGTAATTTCA-AAAGGGATTATTTAGTAAATAATTATAAAAGAAGA-GTATTTTC
* * * *
14733523 GTAATTAA-AGTATGAGAACATAATAGTTAATTTTGTCATATGTCTATTACTTGTCATATATTGC
193 ATAATTAAGA-TATGAGAACATAATAGTTAATTTTGCCACATGTCTATTACTTATCATATATTGC
14733587 AAAAG
257 AAAAG
*
14733592 GTATTTTAGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTTGT
1 GTATTTTAGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTCGT
14733657 AATTATGGTATGAGAGCATAATAGTTAATTT
66 AATTATGGTATGAGAGCATAATAGTTAATTT
14733688 CTTATCATAT
Statistics
Matches: 302, Mismatches: 40, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
256 3 0.01
257 45 0.15
258 205 0.68
259 8 0.03
260 1 0.00
261 40 0.13
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (261 bp):
GTATTTTAGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAAGGTGTATAATTTCGT
AATTATGGTATGAGAGCATAATAGTTAATTTAACCACATAACAATTTCTTATCATATAATGGAAA
GGATATTTGGGTAATTTCAAAAGGGATTATTTAGTAAATAATTATAAAAGAAGAGTATTTTCATA
ATTAAGATATGAGAACATAATAGTTAATTTTGCCACATGTCTATTACTTATCATATATTGCAAAA
G
Found at i:14734312 original size:132 final size:131
Alignment explanation
Indices: 14733974--14734379 Score: 344
Period size: 131 Copynumber: 3.1 Consensus size: 131
14733964 TAGAAGACTA
* * * *
14733974 ATTTAGTAAATAATTATAAGAGAAGAA-A-TATCTTT-ATAATTATGGTATAAGGACATAATAAT
1 ATTTAGTAAATAATTACAAGA-AA-AAGAGTAT-TTTCATAATTATGTTATAAGGAAATAACAAT
* *** * * * * *
14734036 CCGTTTGATCACATGTCAC-TTCTTATAATATAAT-GAAAATGATATTTTAGTAATTTAATAAGG
63 CCATGCAACCAAATGTCACTTTCTTATCATATAATCGAAAAAGATATTTTAGTAATTTTATAAGG
14734099 GATT
128 GATT
* * * *
14734103 ATTTTGT-AATAATTACAAGAAAATGAGTATTTTCATAATTATGTTATAAGGAAATAATATTCCA
1 ATTTAGTAAATAATTACAAGAAAAAGAGTATTTTCATAATTATGTTATAAGGAAATAACAATCCA
* * * * * * * *
14734167 TGCAACTAAATGTCAATTTTTTTATCATATTATCTAAAAGGATATTTTTGTCATTTTATAAGGGA
66 TGCAACCAAATGTC-ACTTTCTTATCATATAATCGAAAAAGATATTTTAGTAATTTTATAAGGGA
14734232 TT
130 TT
** * * * ** *
14734234 ATTTAGTAAATAATTTTAAGAAAAAGTGTATTTTCCTAATTAT-TGTATGAGGGCATAACAATCT
1 ATTTAGTAAATAATTACAAGAAAAAGAGTATTTTCATAATTATGT-TATAAGGAAATAACAATCC
** * * * *
14734298 ATTTAACCACATGTCACTTTCTTATCATGTAATGGAAAAAG-CATTTTAGTAATTTTATTAA-GG
65 ATGCAACCAAATGTCACTTTCTTATCATATAATCGAAAAAGATATTTTAGTAATTTTA-TAAGGG
14734361 ATT
129 ATT
14734364 ATTTAGTAAATAATTA
1 ATTTAGTAAATAATTA
14734380 TAGGGGAAGA
Statistics
Matches: 219, Mismatches: 49, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
126 1 0.00
127 6 0.03
128 49 0.22
129 7 0.03
130 45 0.21
131 57 0.26
132 54 0.25
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.40
Consensus pattern (131 bp):
ATTTAGTAAATAATTACAAGAAAAAGAGTATTTTCATAATTATGTTATAAGGAAATAACAATCCA
TGCAACCAAATGTCACTTTCTTATCATATAATCGAAAAAGATATTTTAGTAATTTTATAAGGGAT
T
Found at i:14734394 original size:130 final size:130
Alignment explanation
Indices: 14734055--14734631 Score: 358
Period size: 130 Copynumber: 4.5 Consensus size: 130
14734045 CACATGTCAC
* * * *
14734055 TTCTTATAATATAATGAAAAT-GATATTTTAGTAA-TTTAATAAGGGATTATTTTGT-AATAATT
1 TTCTTATCATATAATGAAAATAG-CATTTTAGTAATTTTATTAA-GGATTATTTAGTAAATAATT
* * * * * * * * * ** *
14734117 ACAAGAAAATGAGTATTTTCATAATTATGTTATAAG-GA-AATAATATTCCATGCAACTAAATGT
64 ATAAGAAAAAGTGTATTTTAATAATTATG--ATACGAGAGCATAACAATCGATTTAACCAAATGT
14734180 CAATT
127 CAA-T
* * * * * * *
14734185 TTTTTATCATATTATCTAAAA-GGATATTTTTGTCATTTTA-TAAGGGATTATTTAGTAAATAAT
1 TTCTTATCATATAAT-GAAAATAG-CATTTTAGTAATTTTATTAA-GGATTATTTAGTAAATAAT
* ** * * * *
14734248 TTTAAGAAAAAGTGTATTTTCCTAATTATTG-TATGAGGGCATAACAATCTATTTAACCACATGT
63 TATAAGAAAAAGTGTATTTTAATAATTA-TGATACGAGAGCATAACAATCGATTTAACCAAATGT
*
14734312 CACT
127 CAAT
*
14734316 TTCTTATCATGTAATGGAAAA-AGCATTTTAGTAATTTTATTAAGGATTATTTAGTAAATAATTA
1 TTCTTATCATATAAT-GAAAATAGCATTTTAGTAATTTTATTAAGGATTATTTAGTAAATAATTA
*** ** * * **
14734380 T-AGGGGAAGATGTATTTTAATAATTATGATACGAGAGCATATTAGTCGCTTTCGCCAAATGTCA
65 TAAGAAAAAG-TGTATTTTAATAATTATGATACGAGAGCATAACAATCGATTTAACCAAATGTCA
14734444 AT
129 AT
* * * * *
14734446 TTCTTATCATATAATGAAAATAGCATTTTGGTAATTTGATTGATGATTATTTAATAAATAATTAT
1 TTCTTATCATATAATGAAAATAGCATTTTAGTAATTTTATTAAGGATTATTTAGTAAATAATTAT
* * * * ** * *
14734511 -A-AAAAA-TGTACTTTT-ATAATTATGGTATGAGGGTATAGTAGTTC-ATTTGA-CAATATGTC
66 AAGAAAAAGTGTA-TTTTAATAATTATGATACGAGAGCATAACA-ATCGATTTAACCAA-ATGTC
14734570 AAT
128 AAT
* * * * * * * *
14734573 TTCTTATCATATACTAAAAATGGTATTTTAGTAATTTCATGAAAGATTATTTAGAAAAT
1 TTCTTATCATATAATGAAAATAGCATTTTAGTAATTTTATTAAGGATTATTTAGTAAAT
14734632 TACTATAGGA
Statistics
Matches: 355, Mismatches: 78, Indels: 31
0.77 0.17 0.07
Matches are distributed among these distances:
126 3 0.01
127 83 0.23
128 6 0.02
129 14 0.04
130 143 0.40
131 52 0.15
132 52 0.15
133 2 0.01
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.41
Consensus pattern (130 bp):
TTCTTATCATATAATGAAAATAGCATTTTAGTAATTTTATTAAGGATTATTTAGTAAATAATTAT
AAGAAAAAGTGTATTTTAATAATTATGATACGAGAGCATAACAATCGATTTAACCAAATGTCAAT
Found at i:14734593 original size:127 final size:128
Alignment explanation
Indices: 14734230--14734847 Score: 372
Period size: 130 Copynumber: 4.8 Consensus size: 128
14734220 TTTTATAAGG
* * * * * *
14734230 GATTATTTAGTAAATAATTTTAAGAAAAAGTGTATTTTCCTAATTATTGTATGAGGGCATAACA-
1 GATTATTTAATAAATAATTAT-AGAAAAA-TGTATTTT-ATAATTATGGTATGAGGGTATAATAG
* * * * * * *
14734294 ATCTATTT-AACCACATGTCACTTTCTTATCATGTAATGGAAAA-AGCATTTTAGTAATTTTATT
63 TTCGATTTCGA-CAAATGTCAATTTCTTATCATATAAT-GAAAATAGCATTTTAGTAATTTCATT
14734357 -AA
126 GAA
* * * * * * * *
14734359 GGATTATTTAGTAAATAATTATAGGGGAAGATGTATTTTAATAATTATGATACGAGAGCATATTA
1 -GATTATTTAATAAATAATTATA--GAAAAATGTATTTT-ATAATTATGGTATGAGGGTATAATA
* * * *
14734424 G-TCGCTTTCGCCAAATGTCAATTTCTTATCATATAATGAAAATAGCATTTTGGTAATTTGATTG
62 GTTCGATTTCGACAAATGTCAATTTCTTATCATATAATGAAAATAGCATTTTAGTAATTTCATTG
*
14734488 AT
127 AA
*
14734490 GATTATTTAATAAATAATTATA-AAAAATGTACTTTTATAATTATGGTATGAGGGTATAGTAGTT
1 GATTATTTAATAAATAATTATAGAAAAATGTA-TTTTATAATTATGGTATGAGGGTATAATAGTT
* * * *
14734554 C-ATTT-GACAATATGTCAATTTCTTATCATATACTAAAAATGGTATTTTAGTAATTTCA-TGAA
65 CGATTTCGACAA-ATGTCAATTTCTTATCATATAATGAAAATAGCATTTTAGTAATTTCATTG-A
14734616 A
128 A
* * * **
14734617 GATTATTTAGA-AAATTACTATAGGAGAAGGGATATTTTTATAATTATGGTATGAGGGTATAATA
1 GATTATTTA-ATAAATAATTATA-GAAAAATG-TA-TTTTATAATTATGGTATGAGGGTATAATA
* * **** * * * * *
14734681 G-TCAATTTGGTTGTA-GTCAACTTT-TTATTATATAATAAAAAAAGTATTTTAGTAATTTAATA
62 GTTCGATTTCGACAAATGTCAA-TTTCTTATCATATAATGAAAATAGCATTTTAGTAATTTCAT-
*
14734743 T-AG
125 TGAA
* * * * * * *
14734746 GATTATTTAGT-AAT-TTTAAAG-GAAATGATATTTTCGTAATTATGCTATGATGGTATAATAGT
1 GATTATTTAATAAATAATTATAGAAAAATG-TATTTT-ATAATTATGGTATGAGGGTATAATAGT
* ** ** * *
14734808 TC-ATTTGGGTAGCTATAAATTTCTTATCATATAATGAAAA
64 TCGATTTCGACAAATGTCAATTTCTTATCATATAATGAAAA
14734848 AGGTATTTTG
Statistics
Matches: 392, Mismatches: 72, Indels: 52
0.76 0.14 0.10
Matches are distributed among these distances:
124 4 0.01
125 40 0.10
126 27 0.07
127 94 0.24
128 10 0.03
129 58 0.15
130 152 0.39
131 7 0.02
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (128 bp):
GATTATTTAATAAATAATTATAGAAAAATGTATTTTATAATTATGGTATGAGGGTATAATAGTTC
GATTTCGACAAATGTCAATTTCTTATCATATAATGAAAATAGCATTTTAGTAATTTCATTGAA
Found at i:14734753 original size:129 final size:123
Alignment explanation
Indices: 14734522--14734880 Score: 366
Period size: 126 Copynumber: 2.8 Consensus size: 123
14734512 AAAAATGTAC
* ** *
14734522 TTTTATAATTATGGTATGAGGGTATAGTAGTTCATTTGACAATATGTCAATTTCTTATCATATAC
1 TTTTATAATTATGGTATGAGGGTATAATAGTTCATTTG--GGTA-GTCAATTTCTTATCATATAA
* * * *
14734587 TAAAAATGGTATTTTAGTAATTTCATGA-AAGATTATTTAGAAAATTACTATAGGAGAAGGGATA
63 TAAAAAAGGTATTTTAGTAATTTAAT-ATAGGATTATTTAG-AAATT-CTAAAGGA-AA-GGATA
14734651 T
123 T
*
14734652 TTTTATAATTATGGTATGAGGGTATAATAG-TCAATTTGGTTGTAGTCAACTTT-TTATTATATA
1 TTTTATAATTATGGTATGAGGGTATAATAGTTC-ATTTGG--GTAGTCAA-TTTCTTATCATATA
* * * *
14734715 ATAAAAAAAGTATTTTAGTAATTTAATATAGGATTATTTAGTAATTTTAAAGGAAATGATAT
62 ATAAAAAAGGTATTTTAGTAATTTAATATAGGATTATTTAGAAATTCTAAAGGAAAGGATAT
** * * *
14734777 TTTCGTAATTATGCTATGATGGTATAATAGTTCATTTGGGTAGCTATAAATTTCTTATCATATAA
1 TTTTATAATTATGGTATGAGGGTATAATAGTTCATTTGGGTAG---TCAATTTCTTATCATATAA
* *
14734842 TGAAAAAGGTATTTT-GATAATTTAATATGGGATTATTTA
63 TAAAAAAGGTATTTTAG-TAATTTAATATAGGATTATTTA
14734881 TTAGTAATTA
Statistics
Matches: 196, Mismatches: 22, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
123 4 0.02
125 41 0.21
126 51 0.26
127 6 0.03
128 5 0.03
129 50 0.26
130 39 0.20
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (123 bp):
TTTTATAATTATGGTATGAGGGTATAATAGTTCATTTGGGTAGTCAATTTCTTATCATATAATAA
AAAAGGTATTTTAGTAATTTAATATAGGATTATTTAGAAATTCTAAAGGAAAGGATAT
Found at i:14734921 original size:21 final size:21
Alignment explanation
Indices: 14734897--14734938 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14734887 ATTATAAGAG
14734897 AAGGAATATTTTTGTAATTAT
1 AAGGAATATTTTTGTAATTAT
14734918 AAGGAATATTTTTGTAATTAT
1 AAGGAATATTTTTGTAATTAT
14734939 GTTATGAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (21 bp):
AAGGAATATTTTTGTAATTAT
Found at i:14735157 original size:130 final size:129
Alignment explanation
Indices: 14734950--14735260 Score: 385
Period size: 130 Copynumber: 2.4 Consensus size: 129
14734940 TTATGAGCGA
* * * *
14734950 ATAATAATCCATTTGATCACATATCAATTTCTTATCATGTAATGAAAAAGGTAATTTAGTAATTT
1 ATAATAATCCATTTG-TCACATATCAATTTCTTATCATATAATGAAAATGATAATTTAATAATTT
* *
14735015 AATAAGAGATTATTTAACAAATAATTATAA-AAGATATG-GTATTTTCGTAATTACAATATGAAG
65 AATAAGAGATTATTTAACAAATAATTATAAGAA-AAATGAGTATTTT-GTAATTACAATATGAAA
14735078 AT
128 AT
* * *
14735080 ATAATAATCCATTTAGTCACATATCAATTTCTTGTCATATAATGGAAATGATACTTTAATAATTT
1 ATAATAATCCATTT-GTCACATATCAATTTCTTATCATATAATGAAAATGATAATTTAATAATTT
** * ** *
14735145 GTTGAG-GAATTATTTAGTAAATAATTATAAGAAAAATGAGTATTTTGTAATTATAATATGAAAA
65 AATAAGAG-ATTATTTAACAAATAATTATAAGAAAAATGAGTATTTTGTAATTACAATATGAAAA
14735209 T
129 T
* * *
14735210 ATAATAATCAATTTGGTCACATATCAATTTCTTATTATATATTGAAAATGA
1 ATAATAATCCATTT-GTCACATATCAATTTCTTATCATATAATGAAAATGA
14735261 CATTTTGTCA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
129 1 0.01
130 145 0.93
131 10 0.06
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (129 bp):
ATAATAATCCATTTGTCACATATCAATTTCTTATCATATAATGAAAATGATAATTTAATAATTTA
ATAAGAGATTATTTAACAAATAATTATAAGAAAAATGAGTATTTTGTAATTACAATATGAAAAT
Found at i:14735588 original size:3 final size:3
Alignment explanation
Indices: 14735572--14735633 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
14735562 AAAAATAAAA
* *
14735572 AAT AAT -AT AGT AAT AAT -AT AAT AAT -AT AAT AAA AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
14735616 AAAT AAT AGT AAA AAT AA
1 -AAT AAT AAT AAT AAT AA
14735634 AACATGTAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
2 8 0.17
3 35 0.76
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14735588 original size:11 final size:11
Alignment explanation
Indices: 14735572--14735623 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
14735562 AAAAATAAAA
*
14735572 AATAATATAGT
1 AATAATATAAT
14735583 AAT-A-AT-AT
1 AATAATATAAT
14735591 AATAATATAAT
1 AATAATATAAT
*
14735602 AAAAATATAAT
1 AATAATATAAT
14735613 AATAA-ATAAT
1 AATAATATAAT
14735623 A
1 A
14735624 GTAAAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
8 4 0.11
9 3 0.09
10 9 0.26
11 19 0.54
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
AATAATATAAT
Found at i:14735596 original size:19 final size:19
Alignment explanation
Indices: 14735572--14735621 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
14735562 AAAAATAAAA
* *
14735572 AATAATATAGTAATAATAT
1 AATAATATAATAAAAATAT
14735591 AATAATATAATAAAAATAT
1 AATAATATAATAAAAATAT
14735610 AATAATA-AATAA
1 AATAATATAATAA
14735622 TAGTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (19 bp):
AATAATATAATAAAAATAT
Found at i:14735632 original size:19 final size:20
Alignment explanation
Indices: 14735548--14735633 Score: 66
Period size: 22 Copynumber: 4.1 Consensus size: 20
14735538 ACAAAAACCA
* * *
14735548 AATAAATAAAATTAAAAAAT
1 AATAAATAATAGTAATAAAT
*
14735568 AAAAAATAATATAGTAATAATAT
1 AATAAAT-A-ATAGTAATAA-AT
**
14735591 AATAATATAATAAAAATATAAT
1 AATAA-ATAATAGTAATA-AAT
14735613 AATAAATAATAGTAA-AAAT
1 AATAAATAATAGTAATAAAT
14735632 AA
1 AA
14735634 AACATGTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
19 5 0.10
20 7 0.13
21 9 0.17
22 21 0.40
23 8 0.15
24 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
AATAAATAATAGTAATAAAT
Found at i:14738329 original size:24 final size:25
Alignment explanation
Indices: 14738302--14738349 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
14738292 TTAACAATAA
14738302 TTATTATTTATAAAA-AATGTTATT
1 TTATTATTTATAAAAGAATGTTATT
*
14738326 TTATTATTTTTAAAAGGAATGTTA
1 TTATTATTTATAAAA-GAATGTTA
14738350 CGATAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (25 bp):
TTATTATTTATAAAAGAATGTTATT
Found at i:14740135 original size:57 final size:57
Alignment explanation
Indices: 14740047--14740160 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
14740037 TTAGAATATA
14740047 TAAAGAAGTATCTTGATATTAATCAAAGATTGGATTTGTTTACTCTAGCTGTGTATG
1 TAAAGAAGTATCTTGATATTAATCAAAGATTGGATTTGTTTACTCTAGCTGTGTATG
14740104 TAAAGAAGTATCTTGATATTAATCAAAGATTGGATTTGTTTACTCTAGCTGTGTATG
1 TAAAGAAGTATCTTGATATTAATCAAAGATTGGATTTGTTTACTCTAGCTGTGTATG
14740161 ATTTAATGAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (57 bp):
TAAAGAAGTATCTTGATATTAATCAAAGATTGGATTTGTTTACTCTAGCTGTGTATG
Found at i:14741763 original size:3 final size:3
Alignment explanation
Indices: 14741755--14741800 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
14741745 TGTAAACTAT
14741755 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14741801 GTTTATACCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14746065 original size:145 final size:144
Alignment explanation
Indices: 14745753--14746145 Score: 517
Period size: 145 Copynumber: 2.7 Consensus size: 144
14745743 TTAAAACATA
* **
14745753 AAAAATCATGAAATA-AATGAAATTGAGATCTGAAAAGTTTCATGAAAATCCAAACTCAGGAAAG
1 AAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATCCAAACTCAAAAAAG
*
14745817 CCAAATTACAAAAATACCTTTATAGGGTATTTTGGTAATTTCACACTTCTCAGGATACTACTGTG
66 CCAAATTACAAAAATACCCTTATAGGGTATTTTGGTAATTTCACACTTCTCAGGATACTACTGTG
14745882 ATTTCAAATACACC
131 ATTTCAAATACACC
* * **
14745896 AAAAATCATGAAAAATTATGAAATT-AGGATCTGAAATGTTTCATGAAAATCTGAACTCAAAAAA
1 AAAAATCATGAAATATTATGAAATTGA-GATCTGAAAAGTTTCATGAAAATCCAAACTCAAAAAA
* * * * * *
14745960 GCTAGATTACAAAAATACCCTTATAGGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTGCTG
65 GCCAAATTACAAAAATACCCTTATA-GGGTATTTTGGTAATTTCACACTTCTCAGGATACTACTG
*
14746025 TGATTTCAAATGCACC
129 TGATTTCAAATACACC
* * * *
14746041 AAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCATGAAAATCCAATCT-AGGGAAA
1 AAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATCCAAACTCA--AAAA
* *
14746105 A-CCAAATTACAAAAATATCCTAATAAGGGTATTTT-GTAATT
64 AGCCAAATTACAAAAATACCCTTAT-AGGGTATTTTGGTAATT
14746146 CAATGATTTC
Statistics
Matches: 216, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
143 15 0.07
144 69 0.32
145 126 0.58
146 6 0.03
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (144 bp):
AAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATCCAAACTCAAAAAAG
CCAAATTACAAAAATACCCTTATAGGGTATTTTGGTAATTTCACACTTCTCAGGATACTACTGTG
ATTTCAAATACACC
Found at i:14746886 original size:129 final size:130
Alignment explanation
Indices: 14746655--14746912 Score: 301
Period size: 129 Copynumber: 2.0 Consensus size: 130
14746645 AAGAGAAAGA
* * ** *
14746655 GTATTTTCATAATTATGGTATGATAGCATAATAGCCCATTTGACCACATTTTGAATTTTTATCAT
1 GTATTTTCATAATTATGGTATGAGAGCATAAGAGCCCATTTGACCACATAGTCAATTTTTATCAT
* *
14746720 ATAATGGAAAAGGCATTTTAGTAATTTCTTGAGGGATTATTT-GCAAATAATTATAAAAGAATGG
66 ATAATGGAAAAGGCATTTTAGAAATTTCATGAGGGATTATTTAGCAAATAATTATAAAAGAATGG
** * **
14746784 GTATTTTTGTAATTATGGTATGAGGGCATAAGAGTTCATTTGACCACA-AGTCAATTTCTTATCA
1 GTATTTTCATAATTATGGTATGAGAGCATAAGAGCCCATTTGACCACATAGTCAATTT-TTATCA
* * * *
14746848 TATAGTGG-AAAGGTTATTTTA-AAATTTTCAT-AGTGGATTATTTAGTAAATAATTATAAGAGA
65 TATAATGGAAAAGG-CATTTTAGAAA-TTTCATGAG-GGATTATTTAGCAAATAATTATAAAAGA
14746910 ATG
127 ATG
14746913 AGTGGTTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
128 15 0.14
129 74 0.69
130 19 0.18
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (130 bp):
GTATTTTCATAATTATGGTATGAGAGCATAAGAGCCCATTTGACCACATAGTCAATTTTTATCAT
ATAATGGAAAAGGCATTTTAGAAATTTCATGAGGGATTATTTAGCAAATAATTATAAAAGAATGG
Found at i:14747600 original size:213 final size:213
Alignment explanation
Indices: 14747228--14747643 Score: 491
Period size: 213 Copynumber: 2.0 Consensus size: 213
14747218 AAGAATGGAT
* * * *
14747228 TTTTTGTAATTATGATATGAGGGCATAATAATCTATTTGACCATATGTCAATTTCTTATCATATA
1 TTTTCGTAATTATGATATGAGGGCATAATAACCCATTTGACCACATGTCAATTTCTTATCATATA
* * * * *
14747293 CTAAAAAAAGTATTTTGGTAATTTCATAAAGGATTATTTAGTAAATAATTATAAAAAAATGAGTA
66 ATAAAAAAAGCATTTTAGTAATTACATAAAGGATTATTTAGTAAATAATTATAAAAAAACGAGTA
* * ** *
14747358 GTTTTGTAATTAAAATATAAGGGCATAATAG-TCAATTTGGTCATGTGTCAATTTTTTATCATAT
131 GTTTTATAATTAAAATATAAGGGCATAATAGTTC-ATTTGATCATAAGTCAATTTCTTATCATAT
14747422 AATGGAAAGAGAAAGGGTG
195 AATGGAAAGAGAAAGGGTG
* * *
14747441 TTTTCGTAATTATGGTATGAGGGCATAATAGCCCATTTGACCACATTTCAAATTT-TTATCATAT
1 TTTTCGTAATTATGATATGAGGGCATAATAACCCATTTGACCACATGTC-AATTTCTTATCATAT
** * * * * * * *
14747505 AATGGAAAAGGCATTTTAGTAATTACTTGATGGATTATTT-GATAAATAATTATAAGAGAACGGG
65 AATAAAAAAAGCATTTTAGTAATTACATAAAGGATTATTTAG-TAAATAATTATAAAAAAACGAG
***
14747569 TA-TTTTCATAATTATGGTATGAA-GGCATAATAGTTCATTTGATCATAAGTCAATTTCTTATCA
129 TAGTTTT-ATAATTAAAATAT-AAGGGCATAATAGTTCATTTGATCATAAGTCAATTTCTTATCA
14747632 TATAATGGAAAG
192 TATAATGGAAAG
14747644 GATAATTTAA
Statistics
Matches: 169, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
212 5 0.03
213 155 0.92
214 9 0.05
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (213 bp):
TTTTCGTAATTATGATATGAGGGCATAATAACCCATTTGACCACATGTCAATTTCTTATCATATA
ATAAAAAAAGCATTTTAGTAATTACATAAAGGATTATTTAGTAAATAATTATAAAAAAACGAGTA
GTTTTATAATTAAAATATAAGGGCATAATAGTTCATTTGATCATAAGTCAATTTCTTATCATATA
ATGGAAAGAGAAAGGGTG
Found at i:14747711 original size:130 final size:130
Alignment explanation
Indices: 14747428--14747712 Score: 318
Period size: 130 Copynumber: 2.2 Consensus size: 130
14747418 ATATAATGGA
* **
14747428 AAGAGAAAGGGT-GTTTTCGTAATTATGGTATGAGGGCATAATAGCCCATTTGACCACATTTCAA
1 AAGAG-AAGGGTAGTTTTCGTAATTATGGTATGAAGGCATAATAGCCCATTTGACCACAAGTCAA
* *
14747492 ATTTTTATCATATAATGGAAAAGGCATTTTAGTAATTACTTGATGGATTATTTGATAAATAATTA
65 ATTTTTATCATATAATGGAAAAGGCATTTTAGAAATTACTAGATGGATTATTTGATAAATAATTA
14747557 T
130 T
* ** * *
14747558 AAGAGAACGGGTA-TTTTCATAATTATGGTATGAAGGCATAATAGTTCATTTGATCATAAGTC-A
1 AAGAGAA-GGGTAGTTTTCGTAATTATGGTATGAAGGCATAATAGCCCATTTGACCACAAGTCAA
* *
14747621 ATTTCTTATCATATAATGG-AAAGG-ATAATTTA-AAATTTTCATAG-TGGATTATTT-AGTATA
65 ATTT-TTATCATATAATGGAAAAGGCAT--TTTAGAAA-TTAC-TAGATGGATTATTTGA-TAAA
14747681 TAATTAT
124 TAATTAT
14747688 AAGAGAAGGAGTAGTTTT-GTAATTA
1 AAGAGAAGG-GTAGTTTTCGTAATTA
14747713 CATTATGACC
Statistics
Matches: 132, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
128 2 0.02
129 17 0.13
130 107 0.81
131 6 0.05
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.38
Consensus pattern (130 bp):
AAGAGAAGGGTAGTTTTCGTAATTATGGTATGAAGGCATAATAGCCCATTTGACCACAAGTCAAA
TTTTTATCATATAATGGAAAAGGCATTTTAGAAATTACTAGATGGATTATTTGATAAATAATTAT
Found at i:14747988 original size:130 final size:128
Alignment explanation
Indices: 14747798--14753855 Score: 2055
Period size: 130 Copynumber: 46.8 Consensus size: 128
14747788 TCTTTTAATT
*
14747798 TTATCATATAATGAAAA-GAGTATTTT-GATAATT-TGATAGGGGATTATTTAGTAAATAATTAT
1 TTATCATATAATGAAAATG-GCATTTTAGA-AATTCT-ATA-GGGATTATTTAGTAAATAATTAT
* * **
14747860 AAGAGAAAGGGTATTTTCATAATTATGTTATAAGGACATAATAGTCCATTTGGCTGTATGTTAAT
62 AAGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGG-TAAATGTTAAT
14747925 TTC
126 TTC
* * * * *
14747928 TTATCTTATAATGAAAATGGCATATCAAAAATTCTATAGAGGATTATTTAGTAAATAATTATATG
1 TTATCATATAATGAAAATGGCATTTTAGAAATTCTATAG-GGATTATTTAGTAAATAATTATAAG
* * * ** * * *
14747993 AG-AAGGGATATTTTCATAATTATAGTATAA-TAGTATAATAGTCAATTTGACCACATGTCAGTT
65 AGAAAGGG-TATTTTCATAATTATGGTATAAGGA-CATAATAGTCAATTTG-GTAAATGTTAATT
14748056 TC
127 TC
* * * * * *
14748058 TTATCATATAATGAAAA-GTGCAATTTGGAAATT-TAATATTGAATAATTTAATAAATAATTATA
1 TTATCATATAATGAAAATG-GCATTTTAGAAATTCT-ATA-GGGATTATTTAGTAAATAATTATA
* * * * ** ** *
14748121 GGAGAAGGGGTATTTTCATAATTATGGTACGAAGG-CATAATAGTCTATTTTTTCACCTGCTAAT
63 AGAGAAAGGGTATTTTCATAATTATGGTA-TAAGGACATAATAGTCAATTTGGT-AAATGTTAAT
*
14748185 TTT
126 TTC
* * * * * *
14748188 TTATCATATAATGAAAAAGGCATTTTAGTAATTTCTTTAGGGCTTATTTAGTAAATCATTTTAAG
1 TTATCATATAATGAAAATGGCATTTTAG-AAATTCTATAGGGATTATTTAGTAAATAATTATAAG
* * **** * * * *
14748253 AGAAAGGGTATTTTCATAATTATGGCATGAGGGTGGAGTAGTCAATTTGATCAATTGATAATTTC
65 AGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAATTTC
* * * * * * * *
14748318 TTATCATATAATGGAAAGGGTAATTTCATAATTTC-ATAAGAGATTATTTAGTAAATAATGATAA
1 TTATCATATAATGAAAATGG-CATTTTAGAAATTCTAT-AGGGATTATTTAGTAAATAATTATAA
* * * * * * * *
14748382 GAG-AAGGGTTATTTTCATAATTATGGTGTGAGGGCAGAATAGTCCATTTGGTCAAATATCAGTT
64 GAGAAAGGG-TATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAATT
14748446 TC
127 TC
* * * * * *
14748448 TTATCATATAATGGAAATGGCATTTTGGAAATT-TGATAGGGCATTATTTTGTAAATAGTTACAT
1 TTATCATATAATGAAAATGGCATTTTAGAAATTCT-ATAGGG-ATTATTTAGTAAATAATTATAA
* * * * ** * *
14748512 GAGAAA-GGTATTTCCATAATTATGATATCAGGGA-ATAATTGTTC-ATTTAGCCACAA-ATCAA
64 GAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAG-TCAATTT-GGTA-AATGTTAA
14748573 TTTC
125 TTTC
* * * * * * * * * *
14748577 TTATCATATAATGGATAGGGTATTTTTATAATTTCT-TA--GATCACTTAGTAAATAATTTTAAA
1 TTATCATATAATGAAAATGGCA-TTTTAGAAATTCTATAGGGATTATTTAGTAAATAATTATAAG
* * * * * * * *
14748639 AG-AAGGAATATAATTTCGTAATTATTGTATAGGGGCATAATTGTCAATTTGACCT-AATGTCAA
65 AGAAAGG-GTAT--TTTCATAATTATGGTATAAGGACATAATAGTCAATTTG--GTAAATGTTAA
14748702 TTTC
125 TTTC
* * * * * ** * *
14748706 TTATCAAATAATGGAAA-GGTTATTTTCATAATTTC-ATAAAAGATTATTTGGTAAATAATTGTA
1 TTATCATATAATGAAAATGG-CATTTT-AGAAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * * * *
14748769 AGAGAATGGTTGTTTTTATAATTATGGTATGAAGG-CATAATTGTCCATTTGGCCACATGTTAAT
63 AGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGG-TAAATGTTAAT
14748833 TTC
126 TTC
* * * * * * * **
14748836 TTATCATATACT-AGAAAGGGTATTTTGGTAATTTTATTTGATATTATTTAGTAAATAATTATAA
1 TTATCATATAATGA-AAATGGCATTTTAGAAATTCTA-TAGGGATTATTTAGTAAATAATTATAA
* * * ** * * * * *
14748900 GAGAAAGGTTATTTTCGTCATTATGGTATAAGGGTAAAATAGTCAATTTGGCCACATGTCAATTA
64 GAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGG-TAAATGTTAATTT
14748965 C
128 C
* * * * * * * * *
14748966 TTGTCATATAA-CAGGAATGGCATTCTGGTAATTTCT-TAGGGGTTATTTTGTAAAAAAATTATA
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTATAGGGATTATTTAGT-AAATAATTATA
* * ** * * * ** ** ** * *
14749029 AGAGATA-GGCATTTTTGTAATTATTGAATGAGGGTATAATAGTTTATTTGACCACAT-ATAATT
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAATT
14749092 TC
127 TC
* * * * * *
14749094 TTATCATATAATGAGAAA-GACGTCTTAGTAATTTCT-TAAGGGCTTATTTGGTAAATAATTATA
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
** * ** ** *
14749157 A-A-AAAGAGGTATTTTTGTAATTATGGTATGAAGG-CATAATAGTTAACTTATCCT-CTTATTA
63 AGAGAAAG-GGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAA-TT-TGGTAAATGTTA
14749218 ATTTC
124 ATTTC
* * ** *** * * * *
14749223 TTATCATGTAATGGAAATGGTGTTTTAGTTTTTTTTTTTTTAGGGCA-TATTTAGTAGATATTTA
1 TTATCATATAATGAAAATGGCATTTTAG----AAATTCTATAGGG-ATTATTTAGTAAATAATTA
* * * * * * *
14749287 TAAGAGAAAGGGTATTTTCGTAATTGTGGCATAAAAGA-GTAATAG-CAAATTTGATCAAATGTC
61 TAAGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTC-AATTTGGT-AAATGTT
14749350 AATTTC
123 AATTTC
* * * * * * *
14749356 TTATCATATAATGAAAAGGGTATTTTCATAATTTC-ATCGAAGATTATTTAGTAAATAATTACAA
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTATAG-GGATTATTTAGTAAATAATTATAA
* **
14749420 GAG-AAGGAGTATATTTTCATAGTTATGGTATGATAGG--ATAATAGTCAATTTGACAACATGTT
64 GAGAAAGG-G--TATTTTCATAATTATGGTAT-A-AGGACATAATAGTCAATTTGGTAA-ATGTT
14749482 AATTTC
123 AATTTC
* * * * * * * * *
14749488 TTATCATCTAAAGAAAATGGTATTTTTGTATTTTTGTA--GATTATTTAATAAATAATTATAAGA
1 TTATCATATAATGAAAATGGCATTTTAGAAATTCTATAGGGATTATTTAGTAAATAATTATAAGA
* * * * ** * * * * * *
14749551 GAAGGGGTATTTTCATAATTATAGTGTGAGGGTATAATTGTCTATTTGGTCACATATCAATTTA
66 GAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAATTTC
* * * * * * *
14749615 TTATCATATAATGGAAAGGGCATTTTGGAAATT-TGGTATGGAATTATTTTGTAAATAGTTACT-
1 TTATCATATAATGAAAATGGCATTTTAGAAATTCT-ATA-GGGATTATTTAGTAAATAATTA-TA
* * * * * * *
14749678 AGAG-AAGGGTATCTTCATAATTATGGTATGA-GAGTATAATATTTC-ATTTGGCGACAT-TACA
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGA-CATAATA-GTCAATTTGG-TAAATGT-TA
14749739 ATTT-
124 ATTTC
* * ** * * * *
14749743 TTATCATATAATGGATA-GGGTTTTTCATAATTTCT-TA--GATCATTTAGTAAATAATTTTAA-
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTATAGGGATTATTTAGTAAATAATTATAAG
* ** * * * * * ** * * *
14749803 A-ATAAGGAATATAATTTTGTAATTATTGTGTAAGGGCTTAATTGTCAATTTGACCACATATCAA
65 AGA-AAGG-GTAT--TTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAA
14749867 TTT-
125 TTTC
* * * * * * * * * **
14749870 TTATCAAATAATGGAAA-GGTTAAGTTCATAATTTC-ATAAGAGATTATTTAGTTAATAATCGTA
1 TTATCATATAATGAAAATGG--CATTTTAGAAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * ** * * ** * * *
14749933 AGAGGATGGGTGTTTTCATAGTCACAGTATGCAGG-CATAATAGTTAATTTTGCCATATATCAAT
63 AGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAA-TTTGGTAAATGTTAAT
14749997 TTC
126 TTC
* * * * * * *
14750000 TTATCATGTACTGTAAAGGGTATTTT-GATAATT-TCATTGGAGATTATTTAGTAAACAATTATA
1 TTATCATATAATGAAAATGGCATTTTAGA-AATTCT-ATAGG-GATTATTTAGTAAATAATTATA
* * * * * * * *
14750063 AGAGAATGGTTATGTTCATAATCATGGTATGATGG-CAGAATTGTCAATTTGGCTACAA-GTCAA
63 AGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGG-TA-AATGTTAA
*
14750126 TTAC
125 TTTC
* * * *
14750130 TTATCATATAATAAAAATGGCATTATGGTAATTTCT-TAGAGGATTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAATGGCATTTTAG-AAATTCTATAG-GGATTATTTAGTAAATAATTATAA
* * * ** * **
14750194 GAGAAGGGGTAATTTCATAATTATGGTATGAA-GACATAATAGTCTATTTGACCACAT-ACAATT
64 GAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTG-GTAAATGTTAATT
14750257 TC
127 TC
* * * * *
14750259 TTATCATATAATGAGAAA-GGCATCTTAGTAATTTCT-T-GCAGGCTTAGTTAGTGAATAATTAT
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTATAG--GGATTATTTAGTAAATAATTAT
* * **
14750321 AAGAGAAATGGTATTTTCATAATTATGGTATAAAGG-CATAATAGTCCATTT-GTCCACCTGTTA
62 AAGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGGT--AAATGTTA
14750384 ATTTC
124 ATTTC
* * * * *
14750389 TCATCATGTAATGGAAAA-GGCATTTTAGTAATTTCT-TGAGGGCTTATTTAGTAAATAAATATA
1 TTATCATATAAT-GAAAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * ** * *
14750452 AGAGAAAAGGTATTTTCATAATTATGGCATGA-GACCATAATAGTTGATTTGATCAAATGTGAAT
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGA-CATAATAGTCAATTTGGT-AAATGTTAAT
14750516 TTC
126 TTC
* **** * * *
14750519 TTATCATATAATGGAAACAATATTTTCATAATTTC-ATTAGAGATTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTA-TAGGGATTATTTAGTAAATAATTATAA
* * * * * * * *
14750583 GAGAATA-GTTATTTTCGTATTTATGGTATGATGG-CAAAATAGTCAATTTGGCCACATGTCAA-
64 GAGAA-AGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGG-TAAATGTTAAT
14750645 TTC
126 TTC
* * * * ** * *
14750648 TTATCATATAATAAAAATGGCATTCTA-ATAATTTTTTAAAGATTATTTTGTAAATAATTATAAA
1 TTATCATATAATGAAAATGGCATTTTAGA-AATTCTATAGGGATTATTTAGTAAATAATTATAAG
* * * * * * * ** * **
14750712 AGATAA-GGTATTTTCGTAATTATGATATGAGGGCATAGTAATCTATTTGACCACAT-ACAATTT
65 AGA-AAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAATTT
14750775 C
128 C
* *** * * * *
14750776 TAATCATATAATGAGAAA-GGCGGCTTAGTAATTTCT-TGAGAGCTTTTTTAGTAAATAATTATA
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * * **
14750839 AAAGAAGGGGTATTTTCATATTTATGGTATGAGGGCATAATAGTCCATTT-GTCCACCTGTTAAT
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT--AAATGTTAAT
14750903 TTC
126 TTC
* * * * * *
14750906 TTATCGTATAATGGAAAA-GGCATTTTTGTAATTTTCT-TGAGGGCTTATTTGGTAAGTAATTAT
1 TTATCATATAAT-GAAAATGGCATTTTAG-AA-ATTCTAT-AGGGATTATTTAGTAAATAATTAT
** * * * * * * *
14750969 AA-A-AAAGGGTATTTTTGTAACTATGGCATGAGAACATAATAGTCGATTTGATAAAATGTCAAT
62 AAGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAAT
14751032 TTC
126 TTC
* * * * * * **
14751035 TTATTATATAATG-GAAGGGTATTTTCATAATTTC-ATCAAAGATTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTAT-AGGGATTATTTAGTAAATAATTATAA
* * ** * * ** * *
14751098 GAGCATA-GTTATTTTTGTAATTATGGTATGATGG-CAAAATAGTCAATTTGACCACATGTCAAT
64 GAG-AAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTG-GTAAATGTTAAT
14751161 TTC
126 TTC
** * * *
14751164 TTATCATATAAT-AGAAATGAG-ATTCCAGTAATTTCT-TAAGGGATTATTTTGTAAATAGTTAT
1 TTATCATATAATGA-AAATG-GCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTAT
* * * * * ** ** **
14751226 AA-AGGACAGGGTATCTTT-ATAATCATGGTATGAGGGCATAATTGTCTGTTT-GTCCA-CCT-A
62 AAGA-GAAAGGGTAT-TTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGTAAATGTTAA
14751286 -TT-
125 TTTC
* * * *
14751288 ATA-CAGGGTATAATGGAAAAAGGCATTTTGGTAATTTCT-TGAGGG-TTATTTAGTAAATAATT
1 TTATCA---TATAAT-GAAAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATT
* * * * * *
14751350 ATAAGAGAAA-AGTATTTTCATAATTATGGCATTAGTG-CATAATAGTCGATTTGATCAAATGTC
60 ATAAGAGAAAGGGTATTTTCATAATTATGGTATAAG-GACATAATAGTCAATTTGGT-AAATGTT
14751413 AATTTC
123 AATTTC
* * * *
14751419 TTATCATATAATGGAAAA-GGTATTTTCA-TAATTCCATCAGAGATTATTTAGTAAATAATTATA
1 TTATCATATAAT-GAAAATGGCATTTT-AGAAATTCTAT-AGGGATTATTTAGTAAATAATTATA
** * * * * * ** *
14751482 AGAGAATGAGCATATTTTCATGAA-TATGCTATGATGG-GATAATTGTTAATTTGACAACATGTC
63 AGAGAA--AGGGTATTTTCAT-AATTATGGTAT-AAGGACATAATAGTCAATTTGGTAA-ATGTT
14751545 AATTTC
123 AATTTC
* * * * * * *
14751551 TTATCATCTAATGGAAATGGTATTTTTGTAATTTTGTA--GATTATTTAGTAAATAATTATAAGA
1 TTATCATATAATGAAAATGGCATTTTAGAAATTCTATAGGGATTATTTAGTAAATAATTATAAGA
* * * * ** * * *
14751614 GAATGGGTATTTTCATACTTATGGTGTGAGGGTATAATAGTCTATTTGGTCACATGTCAATTTC
66 GAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAATTTC
* * * * * * *
14751678 TTATCATATAATG-GAATGGGCATTTTGGAAACTT-GATAGGGGATTATTTTGCAAAGAGTTAT-
1 TTATCATATAATGAAAAT-GGCATTTTAGAAA-TTCTATA-GGGATTATTTAGTAAATAATTATA
* * * *
14751740 AG-GATAAGGGTATCTTCATAATTATGGTATGAGGGCATAATAGTTC-ATTT-G-ACCATGTTTC
63 AGAGA-AAGGGTATTTTCATAATTATGGTATAAGGACATAATAG-TCAATTTGGTA-AATG-TT-
*
14751801 AATTTT
123 AATTTC
* * * * ** * * * *
14751807 TTATCATATAATGGATAGGGTATTTTCATCATTTCT-TA--GATCATTTAGTAAATTATTTTAA-
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTATAGGGATTATTTAGTAAATAATTATAAG
* * * * * * ** *
14751868 AAAGAAGGAATATAATTTCATAATTATGGTATAAGGGCTTAATTGCCAATTTGACCAAATGTCAA
65 AGA-AAGG-GTAT--TTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAA
14751933 TTT-
125 TTTC
* * * * * ** *
14751936 TTATCAAATAATGAAAA-GGTTATTTGCATAATTTC-ATAACAGATTATTTAGTAAATAATTGTA
1 TTATCATATAATGAAAATGG-CATTT-TAGAAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * *
14751999 AGAGAATGGTTATGTTCATAATCATGGTATGAAGG-CAAAATAGTCAATTTGGCTACAA-GTCAA
63 AGAGAAAGGGTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGG-TA-AATGTTAA
14752062 TTTC
125 TTTC
* ** * * *
14752066 TTATCATATAAT-AGCAATAACATTATGGTAATTTCT-TAAGGGATTATTTAGTAAATAATTATA
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * ** * *
14752129 GGAGAAAGGGTATTTTCATAATTATGATATGAGGGCATAATAGTCTATTTGACCACATG-CAATT
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAATT
14752193 TC
127 TC
* * * * * * *
14752195 TTATCATATAATGAGAAA-GACGTCTTAGTAATTTCT-TGAGCGCTTATTTAGTAAATAATTATG
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * * * * **
14752258 AGACAAAAGGTATTTTCGTAATTATGGTGTAA-CAGCATAACAGTCCAGTT-GTCCATCTGATTA
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGA-CATAATAGTCAATTTGGT--AAATG-TTA
14752321 ATTTC
124 ATTTC
* * * *
14752326 TTATTATGTAATGGAAAA-GGCA-TTTAGTAATTTCT-TGAGGGCTTATTTAGTAAATAATTATA
1 TTATCATATAAT-GAAAATGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * * * * * * * *
14752388 AGTG-AAGGGATATTTTCATAATTATGGCATGAGGGCGTAGTAATCGATTTGATCAAATGTCAAT
63 AGAGAAAGGG-TATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAAT
14752452 TTC
126 TTC
* * * * * **
14752455 TTATCATATAATGGAAAGGGTATTTTCA-TAATTTTATCAGAAATTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAATGGCATTTT-AGAAATTCTAT-AGGGATTATTTAGTAAATAATTATAA
* * * ** * * *
14752519 GA-AAATAGTTATTTTCATAATTATAGTATAAGGGTAAAATAGTCAATTTGATCACATGTTAATT
64 GAGAAA-GGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGT-AAATGTTAATT
14752583 TC
127 TC
* * * * **
14752585 TTATCAAATAAT-AGAAATGGCATTCTGGTAATTTCT-TAGAGGATTATTTTTTAAATAATTATA
1 TTATCATATAATGA-AAATGGCATTTTAG-AAATTCTATAG-GGATTATTTAGTAAATAATTATA
* ** * * * * * * ** * *
14752648 AAAGATGGGGT-TCTTTCGTAATTATGTTTTGAGGGCATAATAGTCTATTTGACCACAT-ATAAT
63 AGAGAAAGGGTAT-TTTCATAATTATGGTATAAGGACATAATAGTCAATTTG-GTAAATGTTAAT
14752711 TTC
126 TTC
* *
14752714 TTATCATATAATGAAAAAAGTGGC---TTAGTAATTTCT-TGAGGGCTTATTTAGTAAATAATTA
1 TTATCATATAATG--AAAA-TGGCATTTTAG-AAATTCTAT-AGGGATTATTTAGTAAATAATTA
* ** * * ** ** ** * *
14752775 TAAGAGAAAGGATATTTTTGTAATTATGGCATTAGTG-TGTAGCAGTTGATTTGATCAAATGTCA
61 TAAGAGAAAGGGTATTTTCATAATTATGGTATAAG-GACATAATAGTCAATTTGGT-AAATGTTA
14752839 ATTTC
124 ATTTC
* * * * * *
14752844 TTATCATATAATGGAAAAAGGTATTTTCATAACTT-TATTGGAGATTATTTAGTAAATAATTGTA
1 TTATCATATAAT-GAAAATGGCATTTT-AGAAATTCTATAGG-GATTATTTAGTAAATAATTATA
* * * * ** * *
14752908 AGAG-AAGGAATATATTTTCAAAATTATGGTATGATGG-GATAATAGTCAATTTGACAACAAGTC
63 AGAGAAAGG---GTATTTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTGGTAA-ATGTT
14752971 AATTTC
123 AATTTC
* * * **
14752977 TTATCATCTAAT-AGAAATGGTATTTTTGTGATT-T-T-GTGGATTATTTAGTAAATAATTATAA
1 TTATCATATAATGA-AAATGGCATTTTAGAAATTCTATAG-GGATTATTTAGTAAATAATTATAA
* * * ** * * * * *
14753038 GAGAATGGGTATTTTCATAATTATGGTGTGAGGGTA-AAGTAGACTATTGGGTCACATGTCAATT
64 GAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAA-TAGTCAATTTGGT-AAATGTTAATT
14753102 TC
127 TC
* * * * * * *
14753104 TTATCATATAATGGTAAA-GGCATTGTGGAAATT-TGATAAGGGATTATTTGGTTAATAGTTACA
1 TTATCATATAAT-GAAAATGGCATTTTAGAAATTCT-AT-AGGGATTATTTAGTAAATAATTATA
* * * * *
14753167 AGAGAAA-GGTATCTTCATAATTATGGTATGAGGGCATAATAGTTC-ATTTGG-ACATATGTCAG
63 AGAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAG-TCAATTTGGTA-A-ATGTTAA
*
14753229 TTTT
125 TTTC
* * * * * * * * *
14753233 TTACCATATAATG-GATTCGGTATTTTCATAATTTCT-TA--GATCATTTAGTAAATATTTTTAA
1 TTATCATATAATGAAAAT-GGCATTTT-AGAAATTCTATAGGGATTATTTAGTAAATAATTATAA
* * * * ** * **
14753294 AAG-AAGGAATATAATTTCGTAATTATGGTATAAAGG-CATAATTGTCAATTTGACCACATGTCC
64 GAGAAAGG-GTAT--TTTCATAATTATGGTAT-AAGGACATAATAGTCAATTTG-GTAAATGTTA
*
14753357 ATTTT
124 ATTTC
* * * * * * * *
14753362 TTTTCAAATAATGGAAA-GGTTATTTTCATAATTTC-ATAAGAGATTATTTAGTAAATAATTGTA
1 TTATCATATAATGAAAATGG-CATTTT-AGAAATTCTAT-AGGGATTATTTAGTAAATAATTATA
* * * ** * *
14753425 AGAGAATA-GGTGTTTTCATAATCATGGTATAAGGGCATAATAGTTC-ATTTGACCACATGTCAA
63 AGAGAA-AGGGTATTTTCATAATTATGGTATAAGGACATAATAG-TCAATTTG-GTAAATGTTAA
14753488 TTTC
125 TTTC
* * * * * * * ** * *
14753492 ATATCATATATTAAAAAGGGTATTTTGGTAATTTCT-T-GAAAATTATTCAGTAAATAATTTTAA
1 TTATCATATAATGAAAATGGCATTTTAG-AAATTCTATAG-GGATTATTTAGTAAATAATTATAA
* * * * *
14753555 GAG-TAGGGATATTTTCATAATTATGATATAATGG-CATAATAGTCAATTTGGCCACATGTCAAT
64 GAGAAAGGG-TATTTTCATAATTATGGTATAA-GGACATAATAGTCAATTTGG-TAAATGTTAAT
14753618 TTC
126 TTC
* * * * *
14753621 TTATCATATAATGGAAA-GGCATTTTATTAATTTCTGA-A-GTATTATTTAGTTAATAATTATAA
1 TTATCATATAATGAAAATGGCATTTTA-GAAATTCT-ATAGGGATTATTTAGTAAATAATTATAA
* * ** * * * *
14753683 TAGAAGGGGTATTTTTGTAATTATGGTATAAGGACATAATAGTCCATTTGGCCATATGTCAATTT
64 GAGAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGG-TAAATGTTAATTT
14753748 C
128 C
* * * *
14753749 TTATCATATAATGGAAAAGGGTATTTT-GATAATT-TCATTGGCGATTATTTAGTAAATATTTAT
1 TTATCATATAAT-GAAAATGGCATTTTAGA-AATTCT-ATAGG-GATTATTTAGTAAATAATTAT
* * * *
14753812 AGGA-AAAGGGATACTTTCATATTTATGGTATGAGGACATAATAG
62 AAGAGAAAGGG-TATTTTCATAATTATGGTATAAGGACATAATAG
14753856 AATATTTGGC
Statistics
Matches: 4513, Mismatches: 1048, Indels: 733
0.72 0.17 0.12
Matches are distributed among these distances:
123 4 0.00
124 25 0.01
125 41 0.01
126 100 0.02
127 329 0.07
128 374 0.08
129 1358 0.30
130 1637 0.36
131 250 0.06
132 262 0.06
133 126 0.03
134 7 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (128 bp):
TTATCATATAATGAAAATGGCATTTTAGAAATTCTATAGGGATTATTTAGTAAATAATTATAAGA
GAAAGGGTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGTAAATGTTAATTTC
Found at i:14749178 original size:128 final size:128
Alignment explanation
Indices: 14748993--14749239 Score: 302
Period size: 128 Copynumber: 1.9 Consensus size: 128
14748983 TGGCATTCTG
* * * * * *
14748993 GTAATTTCTTAGGGGTTATTTTGTAAAAAAATTATAAGAGATAGGCATTTTTGTAATTATTGAAT
1 GTAATTTCTTAGGGCTTATTTGGTAAAAAAATTATAAAAAAGAGGCATTTTTGTAATTATGGAAT
* * * *
14749058 GAGGGTATAATAGTTTATTTGA-CCACATA-TAATTTCTTATCATATAATGAGAAAGACGTCTTA
66 GAAGGCATAATAGTTAACTT-ATCCACATATTAATTTCTTATCATATAATG-GAAAGACGTCTTA
* * *
14749121 GTAATTTCTTAAGGGCTTATTTGGT-AAATAATTATAAAAAAGAGGTATTTTTGTAATTATGGTA
1 GTAATTTCTT-AGGGCTTATTTGGTAAAAAAATTATAAAAAAGAGGCATTTTTGTAATTATGGAA
* * *
14749185 TGAAGGCATAATAGTTAACTTATCCTCTTATTAATTTCTTATCATGTAATGGAAA
65 TGAAGGCATAATAGTTAACTTATCCACATATTAATTTCTTATCATATAATGGAAA
14749240 TGGTGTTTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
127 1 0.01
128 68 0.68
129 31 0.31
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (128 bp):
GTAATTTCTTAGGGCTTATTTGGTAAAAAAATTATAAAAAAGAGGCATTTTTGTAATTATGGAAT
GAAGGCATAATAGTTAACTTATCCACATATTAATTTCTTATCATATAATGGAAAGACGTCTTA
Found at i:14749627 original size:259 final size:258
Alignment explanation
Indices: 14747798--14753895 Score: 3834
Period size: 259 Copynumber: 23.6 Consensus size: 258
14747788 TCTTTTAATT
* * * **
14747798 TTATCATATAATGAAAAGAGTATTTTGATAATTTGATAGGGGATTATTTAGTAAATAATTATAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCAT-GAAGATTATTTAGTAAATAATTATAAG
* * * *** *
14747863 AGAAAGGG--TATTTTCATAATTATGTTAT-AAGGACATAATAGTCCATTTGGCTGTATGTTAAT
65 AG-AAGGGTATATTTTCATAATTATGGTATGAAGG-CATAATAGTCAATTTGACCACATGTCAAT
* * * ** *
14747925 TTCTTATCTTATAATGAAAATGGCA-TATCAAAAATTCTATAGAGGATTATTTAGTAAATAATTA
128 TTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCT-T-GA-GATTATTTAGTAAATAATTA
* * * * ** * *
14747989 TATGAGAAGGGATATTTTCATAATTATAGTATAATAGTATAATAGTCAATTTGACCACATGTCAG
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
14748054 TTTC
255 TTTC
** ** * * * *
14748058 TTATCATATAATGAAAAGTGCAATTTGGA-AATTTAAT-ATTGAATAATTTAATAAATAATTATA
1 TTATCATATAATGAAAAG-GGTATTTTCATAATTTCATGA-AG-ATTATTTAGTAAATAATTATA
* * * * *** *
14748121 GGAGAAGGG-GTATTTTCATAATTATGGTACGAAGGCATAATAGTCTATTTTTTCACCTG-CTAA
63 AGAGAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTC-AA
* * * * * * * *
14748184 TTTTTTATCATATAATGAAAAAGGCATTTTAGTAATTTCTTTAGGGCTTATTTAGTAAATCATTT
127 TTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTC-TT-GAGATTATTTAGTAAATAATTA
* * *** * *
14748249 TAAGAGAAAGGGTATTTTCATAATTATGGCATGAGGGTGGAGTAGTCAATTTGATCA-ATTGAT-
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACA-TG-TC
14748312 AATTTC
253 AATTTC
* * * *
14748318 TTATCATATAATGGAAAGGGTAATTTCATAATTTCATAAGAGATTATTTAGTAAATAATGATAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGA-AGATTATTTAGTAAATAATTATAAG
* * * * ** * * *
14748383 AGAAGGGT-TATTTTCATAATTATGGTGTGAGGGCAGAATAGTCCATTTGGTCAAATATCAGTTT
65 AGAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATTT
* * * * * * * * *
14748447 CTTATCATATAATGGAAATGGCATTTTGGAAATTTGATAGGGCATTATTTTGTAAATAGTTACAT
130 CTTATCATATAATGGAAATGGCATTTTCGTAATTT-CTTGAG-ATTATTTAGTAAATAATTATAA
* * * * * * **
14748512 GAGAA-AGGTATTTCCATAATTATGATATCAGGGAATAATTGTTC-ATTT-AGCCACAAATCAAT
193 GAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAG-TCAATTTGA-CCACATGTCAAT
14748574 TTC
256 TTC
* * * * * * * *
14748577 TTATCATATAATGGATAGGGTATTTTTATAATTTC-T-TAGATCACTTAGTAAATAATTTTAAAA
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAGA
* * * * * *
14748640 GAAGGAATATAATTTCGTAATTATTGTAT-AGGGGCATAATTGTCAATTTGACCTA-ATGTCAAT
66 GAAGG-GTATATTTTCATAATTATGGTATGA-AGGCATAATAGTCAATTTGACC-ACATGTCAAT
* * * ** * *
14748703 TTCTTATCAAATAATGGAAA-GGTTATTTTCATAATTTCATAAAAGATTATTTGGTAAATAATTG
128 TTCTTATCATATAATGGAAATGG-CATTTTCGTAATTTC-T-TGAGATTATTTAGTAAATAATTA
* * * * * * * * *
14748767 TAAGAGAATGGTTGTTTTTATAATTATGGTATGAAGGCATAATTGTCCATTTGGCCACATGTTAA
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
14748832 TTTC
255 TTTC
* ** * *
14748836 TTATCATATACT-AGAAAGGGTATTTTGGTAATTTTATTTG-ATATTATTTAGTAAATAATTATA
1 TTATCATATAATGA-AAAGGGTATTTTCATAATTTCA--TGAAGATTATTTAGTAAATAATTATA
* * * * * *
14748899 AGAGAAAGGT-TATTTTCGTCATTATGGTAT-AAGGGTAAAATAGTCAATTTGGCCACATGTCAA
63 AGAGAAGGGTATATTTTCATAATTATGGTATGAA-GGCATAATAGTCAATTTGACCACATGTCAA
* * * * * * * * *
14748962 TTACTTGTCATATAACAGG-AATGGCATTCTGGTAATTTCTTAGGGGTTATTTTGTAAAAAAATT
127 TTTCTTATCATATAA-TGGAAATGGCATTTTCGTAATTTCTT-GAGATTATTTAGT-AAATAATT
* ** * * * ** *
14749026 ATAAGAGATA--GGCATTTTTGTAATTATTGAATGAGGGTATAATAGTTTATTTGACCACATAT-
189 ATAAGAGA-AGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTC
14749088 AATTTC
253 AATTTC
* * * * *
14749094 TTATCATATAATGAGAAAGACG--TCTT-AGTAATTTC-TTAAGGGCTTATTTGGTAAATAATTA
1 TTATCATATAATGA-AAAG-GGTATTTTCA-TAATTTCATGAA--GATTATTTAGTAAATAATTA
* * * * * * *
14749155 TAA-AAAAGAGGTAT-TTTT-GTAATTATGGTATGAAGGCATAATAGTTAACTT-ATCCTCTTAT
61 TAAGAGAAG-GGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGA-CCACATGT
* * ** * ** * * *
14749216 TAATTTCTTATCATGTAATGGAAATGGTGTTTTAGTTTTTTTTTTTTTAGGGCA-TATTTAGTAG
124 CAATTTCTTATCATATAATGGAAATGGCATTTTCG----TAATTTCTT-GAG-ATTATTTAGTAA
* * * * * * ** *
14749280 ATATTTATAAGAGAAAGGGTATTTTCGTAATTGTGGCATAAAAG-AGTAATAG-CAAATTTGATC
183 ATAATTATAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCA-TAATAGTC-AATTTGACC
*
14749343 AAATGTCAATTTC
246 ACATGTCAATTTC
*
14749356 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATCGAAGATTATTTAGTAAATAATTACAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCAT-GAAGATTATTTAGTAAATAATTATAAG
* * *
14749421 AGAAGGAGTATATTTTCATAGTTATGGTATGATAGG-ATAATAGTCAATTTGACAACATGTTAAT
65 AGAAGG-GTATATTTTCATAATTATGGTATGA-AGGCATAATAGTCAATTTGACCACATGTCAAT
* * * * * *
14749485 TTCTTATCATCTAAAGAAAATGGTATTTTTGT-ATTT-TTGTAGATTATTTAATAAATAATTATA
128 TTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTG-AGATTATTTAGTAAATAATTATA
* * * * * ** *
14749548 AGAGAAGGGGTATTTTCATAATTATAGTGTGAGGGTATAATTGTCTATTTGGTCACATATCAATT
192 AGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAATT
*
14749613 TA
257 TC
* * * * * * *
14749615 TTATCATATAATGGAAAGGGCATTTTGGA-AATTTGGTATGGA-ATTATTTTGTAAATAGTTACT
1 TTATCATATAATGAAAAGGGTATTTT-CATAATTT--CATGAAGATTATTTAGTAAATAATTA-T
* * * * *
14749678 -AGAGAAGGG--TATCTTCATAATTATGGTATG-AGAGTATAATATTTC-ATTTGGCGACAT-TA
62 AAGAGAAGGGTATATTTTCATAATTATGGTATGAAG-GCATAATA-GTCAATTTGACCACATGT-
* ** * *
14749737 CAATTT-TTATCATATAATGGATA-GGGTTTTTCATAATTTCTT-AGATCATTTAGTAAATAATT
124 CAATTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTGAGATTATTTAGTAAATAATT
* * * ** ** * * * * * *
14749799 TTAAAATAAGGAATATAATTTTGTAATTATTGTGTAAGGGCTTAATTGTCAATTTGACCACATAT
189 ATAAGAGAAGGGGTAT--TTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGT
14749864 CAATTT-
252 CAATTTC
* * * ** * * **
14749870 TTATCAAATAATGGAAAGGTTAAGTTCATAATTTCATAAGAGATTATTTAGTTAATAATCGTAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGA-AGATTATTTAGTAAATAATTATAAG
* * * * ** * * * *
14749935 AGGATGGG--TGTTTTCATAGTCACAGTATGCAGGCATAATAGTTAATTTTG-CCATATATCAAT
65 A-GAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAA-TTTGACCACATGTCAAT
* * * * * *
14749997 TTCTTATCATGTACTGTAAAGGGTATTTT-GATAATTTCATTGGAGATTATTTAGTAAACAATTA
128 TTCTTATCATATAATGGAAATGGCATTTTCG-TAATTTC-TT-GAGATTATTTAGTAAATAATTA
* * * * * * * * * *
14750061 TAAGAGAATGGTTATGTTCATAATCATGGTATGATGGCAGAATTGTCAATTTGGCTACAAGTCAA
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
*
14750126 TTAC
255 TTTC
* * * * ** * *
14750130 TTATCATATAATAAAAATGGCATTATGGTAATTTCTTAGAGGATTATTTAGTAAATAATTATAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCAT-GAAGATTATTTAGTAAATAATTATAAG
* * *
14750195 AGAAGGGGTA-A-TTTCATAATTATGGTATGAAGACATAATAGTCTATTTGACCACAT-ACAATT
65 AGAA-GGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATT
* * * * *
14750257 TCTTATCATATAATGAGAAA-GGCATCTTAGTAATTTCTTGCAGGCTTAGTTAGTGAATAATTAT
129 TCTTATCATATAATG-GAAATGGCATTTTCGTAATTTCTTG-A-GATTATTTAGTAAATAATTAT
** * * * * * *
14750321 AAGAGAAATGGTATTTTCATAATTATGGTATAAAGGCATAATAGTCCATTTGTCCACCTGTTAAT
191 AAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAAT
14750386 TTC
256 TTC
* * * * * * *
14750389 TCATCATGTAATGGAAAA-GGCATTTT-AGTAATTTCTTGAGGGCTTATTTAGTAAATAAATATA
1 TTATCATATAAT-GAAAAGGGTATTTTCA-TAATTTCATGA-AGATTATTTAGTAAATAATTATA
* * * ** * * *
14750452 AGAGAAAAGG--TATTTTCATAATTATGGCATG-AGACCATAATAGTTGATTTGATCAAATGTGA
63 AGAG-AAGGGTATATTTTCATAATTATGGTATGAAG-GCATAATAGTCAATTTGACCACATGTCA
**** *
14750514 ATTTCTTATCATATAATGGAAACAATATTTTCATAATTTCATTAGAGATTATTTAGTAAATAATT
126 ATTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTC-TT-GAGATTATTTAGTAAATAATT
** * * * * * *
14750579 ATAAGAGAATAGTTATTTTCGTATTTATGGTATGATGGCAAAATAGTCAATTTGGCCACATGTCA
189 ATAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCA
14750644 A-TTC
254 ATTTC
* * * * * ** * * *
14750648 TTATCATATAATAAAAATGGCATTCTAATAATTTTTTAAAGATTATTTTGTAAATAATTATAAAA
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAGA
* * * * * * * *
14750713 GATAAGG--TATTTTCGTAATTATGATATGAGGGCATAGTAATCTATTTGACCACAT-ACAATTT
66 GA-AGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATTT
* *** * *
14750775 CTAATCATATAATGAGAAA-GGCGGCTTAGTAATTTCTTGAGAGCTTTTTTAGTAAATAATTATA
130 CTTATCATATAATG-GAAATGGCATTTTCGTAATTTCTTGAGA--TTATTTAGTAAATAATTATA
* * * * * *
14750839 AAAGAAGGGGTATTTTCATATTTATGGTATGAGGGCATAATAGTCCATTTGTCCACCTGTTAATT
192 AGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAATT
14750904 TC
257 TC
* * ** * * * * *
14750906 TTATCGTATAATGGAAAA-GGCATTTTTGTAATTTTCTTGAGGGCTTATTTGGTAAGTAATTATA
1 TTATCATATAAT-GAAAAGGGTATTTTCATAA-TTTCATGA-AGATTATTTAGTAAATAATTATA
* * * * * * ** *
14750970 A-AAAAGGGTAT-TTTT-GTAACTATGGCATG-AGAACATAATAGTCGATTTGATAAAATGTCAA
63 AGAGAAGGGTATATTTTCATAATTATGGTATGAAG-GCATAATAGTCAATTTGACCACATGTCAA
* * * * **
14751031 TTTCTTATTATATAATGG-AAGGGTATTTTCATAATTTCATCAAAGATTATTTAGTAAATAATTA
127 TTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTC-T-TGAGATTATTTAGTAAATAATTA
* ** * ** * *
14751095 TAAGAGCATAGTTATTTTTGTAATTATGGTATGATGGCAAAATAGTCAATTTGACCACATGTCAA
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
14751160 TTTC
255 TTTC
* * * * * *
14751164 TTATCATATAATAGAAATGAG-A-TTCCAGTAATTTC-TTAAGGGATTATTTTGTAAATAGTTAT
1 TTATCATATAAT-GAAAAGGGTATTTTCA-TAATTTCATGAA--GATTATTTAGTAAATAATTAT
* * * * ** * * *
14751226 AA-AGGACAGGGTAT-CTTT-ATAATCATGGTATGAGGGCATAATTGTCTGTTTGTCCACCTAT-
62 AAGA-GA-AGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTC
* * *** * * *
14751287 TA-TAC--AGGGTATAATGGAAAAAGGCATTTTGGTAATTTCTTGAGGGTTATTTAGTAAATAAT
125 AATTTCTTATCATATAATGG-AAATGGCATTTTCGTAATTTCTTGA-GATTATTTAGTAAATAAT
** * * * * * *
14751349 TATAAGAGAA-AAGTATTTTCATAATTATGGCATTAGTGCATAATAGTCGATTTGATCAAATGTC
188 TATAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTC
14751413 AATTTC
253 AATTTC
* *
14751419 TTATCATATAATGGAAAA-GGTATTTTCATAATTCCATCAGAGATTATTTAGTAAATAATTATAA
1 TTATCATATAAT-GAAAAGGGTATTTTCATAATTTCATGA-AGATTATTTAGTAAATAATTATAA
* * * * * * * *
14751483 GAGAATGAGCATATTTTCATGAA-TATGCTATGATGGGATAATTGTTAATTTGACAACATGTCAA
64 GAGAA-GGGTATATTTTCAT-AATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAA
* * *
14751547 TTTCTTATCATCTAATGGAAATGGTATTTTTGTAA-TT-TTGTAGATTATTTAGTAAATAATTAT
127 TTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTG-AGATTATTTAGTAAATAATTAT
* * * * * **
14751610 AAGAGAATGGGTATTTTCATACTTATGGTGTGAGGGTATAATAGTCTATTTGGTCACATGTCAAT
191 AAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAAT
14751675 TTC
256 TTC
* * * * * * ** * * * * *
14751678 TTATCATATAATGGAATGGGCATTTTGGA-AACTTGATAGGGGATTATTTTGCAAAGAGTTATAG
1 TTATCATATAATGAAAAGGGTATTTT-CATAATTTCAT-GAAGATTATTTAGTAAATAATTATAA
* * * ** *
14751742 GATAAGGG--TATCTTCATAATTATGGTATGAGGGCATAATAGTTC-ATTTGACCATGTTTCAAT
64 GAGAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAG-TCAATTTGACCACATGTCAAT
* * * * * * * * *
14751804 TTTTTATCATATAATGGATAGGGTATTTTCATCATTTCTT-AGATCATTTAGTAAATTATTTTAA
128 TTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTGAGATTATTTAGTAAATAATTAT-A
* ** * * * * *
14751868 AAAGAAGGAATATAATTTCATAATTATGGTATAAGGGCTTAATTGCCAATTTGACCAAATGTCAA
192 AGAGAAGGGGTAT--TTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
14751933 TTT-
255 TTTC
* * * * *
14751936 TTATCAAATAATGAAAAGGTTATTTGCATAATTTCATAACAGATTATTTAGTAAATAATTGTAAG
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGA-AGATTATTTAGTAAATAATTATAAG
* * * * * * *
14752001 AGAATGGT-TATGTTCATAATCATGGTATGAAGGCAAAATAGTCAATTTGGCTACAAGTCAATTT
65 AGAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATTT
* * ** * * * *
14752065 CTTATCATATAATAGCAATAACATTATGGTAATTTCTTAAGGGATTATTTAGTAAATAATTATAG
130 CTTATCATATAATGGAAATGGCATTTTCGTAATTTCTT--GAGATTATTTAGTAAATAATTATAA
* * *
14752130 GAGAAAGGGTATTTTCATAATTATGATATGAGGGCATAATAGTCTATTTGACCACATG-CAATTT
193 GAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAATTT
14752194 C
258 C
* * * * *
14752195 TTATCATATAATGAGAAAGACG--TCTT-AGTAATTTCTTGAGCGCTTATTTAGTAAATAATTAT
1 TTATCATATAATGA-AAAG-GGTATTTTCA-TAATTTCATGA-AGATTATTTAGTAAATAATTAT
* * * * * * * * * *
14752257 GAGACAAAAGG--TATTTTCGTAATTATGGTGT-AACAGCATAACAGTCCAGTTGTCCATC-TGA
62 AAGA-GAAGGGTATATTTTCATAATTATGGTATGAA-GGCATAATAGTCAATTTGACCA-CATG-
* * * * * *
14752318 TTAATTTCTTATTATGTAATGGAAAAGGCA-TTTAGTAATTTCTTGAGGGCTTATTTAGTAAATA
123 TCAATTTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTGA--GATTATTTAGTAAATA
* * * * * * * * *
14752382 ATTATAAGTGAAGGGATATTTTCATAATTATGGCATGAGGGCGTAGTAATCGATTTGATCAAATG
186 ATTATAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATG
14752447 TCAATTTC
251 TCAATTTC
* *
14752455 TTATCATATAATGGAAAGGGTATTTTCATAATTTTATCAGAA-ATTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCAT--GAAGATTATTTAGTAAATAATTATAA
* ** * * * * *
14752519 GAAAATAGT-TATTTTCATAATTATAGTAT-AAGGGTAAAATAGTCAATTTGATCACATGTTAAT
64 GAGAAGGGTATATTTTCATAATTATGGTATGAA-GGCATAATAGTCAATTTGACCACATGTCAAT
* * * * **
14752582 TTCTTATCAAATAATAGAAATGGCATTCTGGTAATTTCTTAGAGGATTATTTTTTAAATAATTAT
128 TTCTTATCATATAATGGAAATGGCATTTTCGTAATTTCTT-GA-GATTATTTAGTAAATAATTAT
* * * * * * *
14752647 AAAAGATGGGGT-TCTTTCGTAATTATGTTTTGAGGGCATAATAGTCTATTTGACCACATAT-AA
191 AAGAGAAGGGGTAT-TTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAA
14752710 TTTC
255 TTTC
** *** * * *
14752714 TTATCATATAATGAAAAAAGTGGCTT-AGTAATTTCTTGAGGGCTTATTTAGTAAATAATTATAA
1 TTATCATATAATGAAAAGGGTATTTTCA-TAATTTCATGA-AGATTATTTAGTAAATAATTATAA
* ** * * ** ** ** * *
14752778 GAGAAAGG-ATATTTTTGTAATTATGGCAT-TAGTGTGTAGCAGTTGATTTGATCAAATGTCAAT
64 GAGAAGGGTATATTTTCATAATTATGGTATGAAG-GCATAATAGTCAATTTGACCACATGTCAAT
* * * * *
14752841 TTCTTATCATATAATGGAAAAAGGTATTTTCATAACTTTATTGGAGATTATTTAGTAAATAATTG
128 TTCTTATCATATAATGG-AAATGGCATTTTCGTAA-TTTCTT-GAGATTATTTAGTAAATAATTA
** * * *
14752906 TAAGAGAAGGAATATATTTTCAAAATTATGGTATGATGGG-ATAATAGTCAATTTGACAACAAGT
190 TAAGAGAAGG--GGTATTTTCATAATTATGGTATGA-GGGCATAATAGTCAATTTGACCACATGT
14752970 CAATTTC
252 CAATTTC
* * ** * **
14752977 TTATCATCTAAT-AGAAATGGTATTTTTGTGATTT--TGTGGATTATTTAGTAAATAATTATAAG
1 TTATCATATAATGA-AAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAG
* * * * * * **
14753039 AGAATGGG--TATTTTCATAATTATGGTGTGAGGGTA-AAGTAGACTATTGGGTCACATGTCAAT
65 AGAA-GGGTATATTTTCATAATTATGGTATGAAGGCATAA-TAGTCAATTTGACCACATGTCAAT
* * * * * * * * *
14753101 TTCTTATCATATAATGGTAAA-GGCATTGTGGAAATTTGATAAGGGATTATTTGGTTAATAGTTA
128 TTCTTATCATATAATGG-AAATGGCATTTTCGTAATTT-CT-TGAGATTATTTAGTAAATAATTA
* * * *
14753165 CAAGAGAA-AGGTATCTTCATAATTATGGTATGAGGGCATAATAGTTC-ATTTGGA-CATATGTC
190 TAAGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAG-TCAATTT-GACCACATGTC
* *
14753227 AGTTTT
253 AATTTC
* * *** * * * * *
14753233 TTACCATATAATGGATTCGGTATTTTCATAATTTC-T-TAGATCATTTAGTAAATATTTTTAAAA
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAGA
* * * * * *
14753296 GAAGGAATATAATTTCGTAATTATGGTATAAAGGCATAATTGTCAATTTGACCACATGTCCATTT
66 GAAGG-GTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATTT
* * * * * * *
14753361 TTTTTCAAATAATGGAAA-GGTTATTTTCATAATTTCATAAGAGATTATTTAGTAAATAATTGTA
130 CTTATCATATAATGGAAATGG-CATTTTCGTAATTTC-T-TGAGATTATTTAGTAAATAATTATA
** * * *
14753425 AGAGAATAGGTGTTTTCATAATCATGGTATAAGGGCATAATAGTTC-ATTTGACCACATGTCAAT
192 AGAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAG-TCAATTTGACCACATGTCAAT
14753489 TTC
256 TTC
* * * ** * * * *
14753492 ATATCATATATTAAAAAGGGTATTTTGGTAATTTCTTGAAAATTATTCAGTAAATAATTTTAAGA
1 TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAGA
* * *
14753557 GTAGGG-ATATTTTCATAATTATGATAT-AATGGCATAATAGTCAATTTGGCCACATGTCAATTT
66 GAAGGGTATATTTTCATAATTATGGTATGAA-GGCATAATAGTCAATTTGACCACATGTCAATTT
** *
14753620 CTTATCATATAATGGAAA-GGCATTTTATTAATTTC-TGAAGTATTATTTAGTTAATAATTATAA
130 CTTATCATATAATGGAAATGGCATTTTCGTAATTTCTTG-AG-ATTATTTAGTAAATAATTATAA
* ** * * * * *
14753683 TAGAAGGGGTATTTTTGTAATTATGGTATAAGGACATAATAGTCCATTTGGCCATATGTCAATTT
193 GAGAAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAATTT
14753748 C
258 C
* ** * *
14753749 TTATCATATAATGGAAAAGGGTATTTTGATAATTTCATTGGCGATTATTTAGTAAATATTTATAG
1 TTATCATATAAT-GAAAAGGGTATTTTCATAATTTCA-TGAAGATTATTTAGTAAATAATTATAA
* * * * * **
14753814 GAAAAGGG-ATACTTTCATATTTATGGTATG-AGGACATAATAG-AATATTTGGCCACAAATCAA
64 GAGAAGGGTATATTTTCATAATTATGGTATGAAGG-CATAATAGTCA-ATTTGACCACATGTCAA
14753876 TTTCTTATCATA-AATTGGAA
127 TTTCTTATCATATAA-TGGAA
14753896 TGGGAATTAT
Statistics
Matches: 4507, Mismatches: 1080, Indels: 503
0.74 0.18 0.08
Matches are distributed among these distances:
253 2 0.00
254 43 0.01
255 184 0.04
256 372 0.08
257 369 0.08
258 640 0.14
259 1497 0.33
260 973 0.22
261 179 0.04
262 136 0.03
263 43 0.01
264 6 0.00
265 59 0.01
266 4 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (258 bp):
TTATCATATAATGAAAAGGGTATTTTCATAATTTCATGAAGATTATTTAGTAAATAATTATAAGA
GAAGGGTATATTTTCATAATTATGGTATGAAGGCATAATAGTCAATTTGACCACATGTCAATTTC
TTATCATATAATGGAAATGGCATTTTCGTAATTTCTTGAGATTATTTAGTAAATAATTATAAGAG
AAGGGGTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGACCACATGTCAATTTC
Found at i:14754571 original size:129 final size:127
Alignment explanation
Indices: 14753924--14755057 Score: 739
Period size: 129 Copynumber: 8.8 Consensus size: 127
14753914 TATTTTCCAC
* * * * * * *
14753924 ATGTCAGTTTATTATCATATAATGGAAAAGGCATTTTAGTAATTTCATTAA-AGATTATTTAGGA
1 ATGTCAATTTCTTATCATATAATGG-AAAGGTATTTTGGTAATTT-AATAAGGGATTATTTAGTA
* **
14753988 A-ATATGTATGAGAGAAGAGGTA-TTTCATAATTATGGTAT-AAGGCCATAATAGT-CACTTTGG
64 ATA-AT-TATAAGAGAAG-GGTATTTTTGTAATTATGGTATGAAGG-CATAATAGTCCA-TTTGG
* *
14754049 TCAC
124 CCAT
* ** * * *
14754053 AT-TCAATTTCTTATCAAATAATGGAAAGGGCTGTTTGGTAATTTCAT-AGGTAATTGTTTAGTA
1 ATGTCAATTTCTTATCATATAATGGAAAGGTAT-TTTGGTAATTTAATAAGG-GATTATTTAGT-
* * * ** ** * * * * *
14754116 AATAATTGTAAAAGAAATGGTATTTTCATAATTATGGTATGGGGGAATAATTGTCAATTTAGTCA
63 AATAATTATAAGAG-AAGGGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCA
14754181 CT
127 -T
* * * ** * * *
14754183 -TGTTAACTTCTTATCATATATTGGAAAGGGTATTTCAGTAATTTCATAAAGGATTATTTACTAG
1 ATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTAATAAGGGATTATTTAGTA-
* * * * * * * * * *
14754247 CTAACTATTAGAAAAAGAAGCATTTTTGTAATTATGGTATGAAGGCATAGTAATTCATTTGGTCA
64 ATAATTATAAG-AGAAG-GGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCA
*
14754312 C
127 T
* * ** * ** * *
14754313 ATGTCAATTTTTTATCATATACTGGAAAAGGTATTTTATTGATTTCGTAAGGGATTAGTTAGAAA
1 ATGTCAATTTCTTATCATATAATGG-AAAGGTATTTTGGTAATTTAATAAGGGATTATTTAG-TA
* * * * *
14754378 ATTATTATAAGAAAAGGGATATTTTCGTAATTATGGTATGAGGGCATAATAGTCCATTTTGCCAT
64 ATAATTATAAGAGAAGGG-TATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCAT
* * * *
14754443 ATGTCAAGTTCTTATCATACAATGGAAAGTGTATTTTGGTAATTTTATAAGGGATTATTTTGTAA
1 ATGTCAATTTCTTATCATATAATGGAAAG-GTATTTTGGTAATTTAATAAGGGATTATTTAGTAA
* * * * *
14754508 TAATTATTAGAGAAGTGGTATTTTTGCAATTATGCTATGAGGGCATAATAGTCTATTTGGCCAT
65 TAATTATAAGAGAAG-GGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCAT
* * *
14754572 ATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAAATTAATAACGGATTATTTAGTAA
1 ATGTCAATTTCTTATCATATAATGG-AAAGGTATTTTGGTAATTTAATAAGGGATTATTTAGTAA
* ** * * * * * *
14754637 TAATTATAAGAGAAAGAGTATTTTCATAATTATGTTATG-CGGAATAACAATCCAATT-GCC-T
65 TAATTATAAGAG-AAGGGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCAT
** * *
14754698 ACCTGTCAATTTCTTATCATGCAATGAAAATGGTATTTTGGTAATTTAATAAGGAATTATTTAGT
1 A--TGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTAATAAGGGATTATTTAGT
* * * * * * *
14754763 AA-ATACTATGAGAGAAGGGGTATTTTTGTAGTTATGATATCAAAGAATAATAGTCCATTTGGCC
63 AATA-ATTATAAGAGAA-GGGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCC
*
14754827 AC
126 AT
* * ** ** **
14754829 ATATCAATTTCTTATCATATAATGTAAAAGAAATTTTAAT-ATTTCTTAAGGGATTATTTAGTAA
1 ATGTCAATTTCTTATCATATAATG-GAAAGGTATTTTGGTAATTTAATAAGGGATTATTTAGT-A
* * ** ** * * * * *
14754893 ATAATTATAAGAAAAGAGCTATTTTCATAATTACAGTATAAAGGGAATAATAATCCACTTGGTCA
64 ATAATTATAAGAGAAG-GGTATTTTTGTAATTATGGTATGAA-GGCATAATAGTCCATTTGGCCA
*
14754958 A
127 T
* * * ** *
14754959 ATATCAATTTCTTATCATATATTGAAAAAGGTATTTTGACAATTTTAT-AGGAGATTATTTAGTA
1 ATGTCAATTTCTTATCATATAATG-GAAAGGTATTTTGGTAATTTAATAAGG-GATTATTTAGT-
* *
14755023 AATAATTATAAAAGAAGGGTATTTTGGTAATTATG
63 AATAATTATAAGAGAAGGGTATTTTTGTAATTATG
14755058 ATAGAGGGGC
Statistics
Matches: 784, Mismatches: 182, Indels: 77
0.75 0.17 0.07
Matches are distributed among these distances:
126 3 0.00
127 16 0.02
128 157 0.20
129 252 0.32
130 226 0.29
131 126 0.16
132 4 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (127 bp):
ATGTCAATTTCTTATCATATAATGGAAAGGTATTTTGGTAATTTAATAAGGGATTATTTAGTAAT
AATTATAAGAGAAGGGTATTTTTGTAATTATGGTATGAAGGCATAATAGTCCATTTGGCCAT
Found at i:14755083 original size:259 final size:256
Alignment explanation
Indices: 14753924--14755143 Score: 855
Period size: 259 Copynumber: 4.7 Consensus size: 256
14753914 TATTTTCCAC
* * * * * * * *
14753924 ATGTCAGTTTATTATCATATAATGGAAAAGGCATTTTAGTAATTTCATTAA--AGATTATTTAGG
1 ATGTCAATTTCTTATCATACAATGAAAAAGGTATTTTGGTAATTTTA-TAAGGAGATTATTTAGT
* ** * * * * *
14753987 AAAT-ATGTATGAGAGAAGAGGTA-TTTCATAATTATGGTATAAGGCCATAATAGTCACTTTGGT
65 AAATAAT-TATAAGAGAAG-GGTATTTTTGTAATTATGATATGAGGGCAAAATAGTCA-TTTGGC
* * * ** * *
14754050 CACAT-TCAATTTCTTATCAAATAATGGAAAGGGCT-GTTTGGTAATTTCAT-AGGTAATTGTTT
127 CACATGTCAATTTCTTATCATATAATGGAAAAGG-TATTTTAATAATTTCATAAGG-GATTATTT
* * * ** **
14754112 AGTAAATAATTGTAAAAGAAATG-GTATTTTCATAATTATGGTATGGGGGAATAATTGT-CAATT
190 AGTAAATAA-T-TATAAGAAAAGAGTATTTTCATAATTA-AGTATAAGGGAATAATAATCCAA-T
* *
14754175 TAGTCAC
251 T-GCCAA
* * * * * * * ** * * *
14754182 TTGTTAACTTCTTATCATATATTGGAAAGGGTATTTCAGTAATTTCATAAAG-GATTATTTACTA
1 ATGTCAATTTCTTATCATACAATGAAAAAGGTATTTTGGTAATTTTATAAGGAGATTATTTAGTA
** * * * * * * * * * * *
14754246 GCTAACTATTAGAAAAAGAAGCATTTTTGTAATTATGGTATGAAGGCATAGTAATTCATTTGGTC
66 AATAATTATAAG-AGAAG-GGTATTTTTGTAATTATGATATGAGGGCAAAAT-AGTCATTTGGCC
* * * * * * *
14754311 ACATGTCAATTTTTTATCATATACTGGAAAAGGTATTTTATTGATTTCGTAAGGGATTAGTTAGA
128 ACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTAATAATTTCATAAGGGATTATTTAGT
* * * * * * * *
14754376 AAATTATTATAAGAAAAGGGATATTTTCGTAATTATGGTATGAGGGCATAATAGTCCATTTTGCC
193 AAATAATTATAAGAAAAGAG-TATTTTCATAATTA-AGTATAAGGGAATAATAATCCA-ATTGCC
*
14754441 AT
255 AA
* * *
14754443 ATGTCAAGTTCTTATCATACAATG-GAAAGTGTATTTTGGTAATTTTATAAGG-GATTATTTTGT
1 ATGTCAATTTCTTATCATACAATGAAAAAG-GTATTTTGGTAATTTTATAAGGAGATTATTTAGT
* * * *
14754506 -AATAATTATTAGAGAAGTGGTATTTTTGCAATTATGCTATGAGGGCATAATAGTCTATTTGGCC
65 AAATAATTATAAGAGAAG-GGTATTTTTGTAATTATGATATGAGGGCAAAATAGTC-ATTTGGCC
* * ** * * *
14754570 ATATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAAATTAATAACGGATTATTTAGT
128 ACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTAATAATTTCATAAGGGATTATTTAGT
* * *
14754635 -AATAATTATAAGAGAAAGAGTATTTTCATAATTATGT-TATGCGGAATAACAATCCAATTGCCT
193 AAATAATTATAAGA-AAAGAGTATTTTCATAATTAAGTATAAG-GGAATAATAATCCAATTGCC-
*
14754698 AC
255 AA
* * * *
14754700 CTGTCAATTTCTTATCATGCAATGAAAATGGTATTTTGGTAATTTAATAAGGA-ATTATTTAGTA
1 ATGTCAATTTCTTATCATACAATGAAAAAGGTATTTTGGTAATTTTATAAGGAGATTATTTAGTA
* * * * **
14754764 AAT-ACTATGAGAGAAGGGGTATTTTTGTAGTTATGATATCAAAG-AATAATAGTCCATTTGGCC
66 AATAATTATAAGAGAA-GGGTATTTTTGTAATTATGATATGAGGGCAA-AATAGT-CATTTGGCC
* * ** *
14754827 ACATATCAATTTCTTATCATATAATGTAAAAGAAATTTTAAT-ATTTCTTAAGGGATTATTTAGT
128 ACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTAATAATTTCATAAGGGATTATTTAGT
* *
14754891 AAATAATTATAAGAAAAGAGCTATTTTCATAATTACAGTATAAAGGGAATAATAATCCACTTGGT
193 AAATAATTATAAGAAAAGAG-TATTTTCATAATTA-AGTAT-AAGGGAATAATAATCCAATT-GC
14754956 CAA
254 CAA
* * * **
14754959 ATATCAATTTCTTATCATATATTGAAAAAGGTATTTTGACAATTTTAT-AGGAGATTATTTAGTA
1 ATGTCAATTTCTTATCATACAATGAAAAAGGTATTTTGGTAATTTTATAAGGAGATTATTTAGTA
* * * *
14755023 AATAATTATAAAAGAAGGGTATTTTGGTAATTATGATA-GAGGGGCAAAAAAGTACATTTGGACA
66 AATAATTATAAGAGAAGGGTATTTTTGTAATTATGATATGA-GGGCAAAATAGT-CATTTGGCCA
* * * * * ** * *
14755087 CATGCCACTTTCTCATCAAATAATGGGATGGGTAGTTTT-ATAATTTCGTAAGTGATT
129 CATGTCAATTTCTTATCATATAATGGAAAAGGTA-TTTTAATAATTTCATAAGGGATT
14755144 CTTTTATTGT
Statistics
Matches: 761, Mismatches: 165, Indels: 70
0.76 0.17 0.07
Matches are distributed among these distances:
256 32 0.04
257 174 0.23
258 97 0.13
259 242 0.32
260 80 0.11
261 129 0.17
262 7 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (256 bp):
ATGTCAATTTCTTATCATACAATGAAAAAGGTATTTTGGTAATTTTATAAGGAGATTATTTAGTA
AATAATTATAAGAGAAGGGTATTTTTGTAATTATGATATGAGGGCAAAATAGTCATTTGGCCACA
TGTCAATTTCTTATCATATAATGGAAAAGGTATTTTAATAATTTCATAAGGGATTATTTAGTAAA
TAATTATAAGAAAAGAGTATTTTCATAATTAAGTATAAGGGAATAATAATCCAATTGCCAA
Found at i:14755602 original size:130 final size:130
Alignment explanation
Indices: 14755155--14756095 Score: 873
Period size: 129 Copynumber: 7.3 Consensus size: 130
14755145 TTTTATTGTA
* * * ** * *
14755155 TATCATATAATGGAAATGGTATTTTGATAATTTTGTAAAGGATTATTTACTAAATAATTATAAGA
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * *
14755220 GATG-GGATATTTTCGTAATTATGATATTG-GGGCATAATAGT-TCATTTGTCCACACGTCAACT
66 GAAGAGG-TATTTTCGTAATTATGTTA-TGAGGGCATAATAGTCT-ATTTGGCCACATGTCAATT
14755282 TCT
128 TCT
* ** * * * *
14755285 TATCACATAATGGAAAA-TATATTTTGGTAATTT-AGTGAGGGATTATTTGGT-AATAACTAAAA
1 TATCATATAAT-GAAAAGGGTATTTTGGTAATTTCA-TAAGGGATTATTTAGTAAATAATTATAA
* * * * *
14755347 GAGAAAAGGTATTTTCGTAACTATGGTATGAGGGAATAATAGTATATTTGGCCACATGTCAATTT
64 GAGAAGAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATTT
14755412 CT
129 CT
* * * *
14755414 TATCATGTAAT-AAAAGGGTATTTTGGTAATTTCATAAGGGATTCTTTACTAAATAATTATAATA
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * * *
14755478 AAAGAGTTATTTTTGTAATTTTGTTGTGAGGGAAAAATATTCTATTTGGTCACATGTCAATTTCT
66 GAAGAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATTTCT
14755543 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * *
14755608 GGAGGGGTATTTTCGTAATTAAGATATGAGTGCATAAT-GTTTACTTGGCCACATGTCATTTTCT
66 GAAGAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATTTCT
* * * * *
14755672 TATTATATAATGAAAAGGGTATTTTGATAATTTTATAAGGTATTATTTAGTAAAGAATTATAAGA
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * ** ** *
14755737 AAATGA-GTATATTCATCATTTTGTTATGAGAGCATAATAGTCCATTTAACCTTAAGTCAATTTC
66 GAA-GAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATTTC
14755801 T
130 T
* * * * *
14755802 TATCACATAATGTCAAAGGGCATTTTAGTAATTTCAT-AGGAGATTAGTTAGTAAATAATTATAA
1 TATCATATAATG-AAAAGGGTATTTTGGTAATTTCATAAGG-GATTATTTAGTAAATAATTATAA
* * * * * *
14755866 GAGAAG-GATATTTTCATAATTATAG-TATGAGAGTATAATAATCTATTTTGCCACATGTCAATT
64 GAGAAGAGGTATTTTCGTAATTAT-GTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATT
14755929 TCT
128 TCT
* * * * * * **
14755932 TATAATATAATGGAGAGGGCATTTTGGTGATTTAATAAGGGATTATTTAGTAAATAATGCTAAGA
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * * *
14755997 GAAGGGGTATTTTTGTAAATATGATATAAAGGCATAACAGTCAATTTGGCTACATGT-AATTTTC
66 GAAGAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAA-TTTC
14756061 T
130 T
**
14756062 TATCATATAATGAAAAGGACATTTTGGTAATTTC
1 TATCATATAATGAAAAGGGTATTTTGGTAATTTC
14756096 TAGCAGTATT
Statistics
Matches: 652, Mismatches: 140, Indels: 38
0.79 0.17 0.05
Matches are distributed among these distances:
127 4 0.01
128 28 0.04
129 298 0.46
130 274 0.42
131 48 0.07
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.39
Consensus pattern (130 bp):
TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
GAAGAGGTATTTTCGTAATTATGTTATGAGGGCATAATAGTCTATTTGGCCACATGTCAATTTCT
Found at i:14755804 original size:259 final size:259
Alignment explanation
Indices: 14755159--14756095 Score: 863
Period size: 259 Copynumber: 3.6 Consensus size: 259
14755149 ATTGTATATC
* * * * *
14755159 ATATAATGGAAATGGTATTTTGATAATTTTGTAAAGGATTATTTACTAAATAATTATAAG-AGAT
1 ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGGATTATTTACTAAATAATTATAAGAAAAT
* * * * * * *
14755223 GGGATATTTTCGTAATTATGATATTG-GGGCATAATAGTTCATTTGTCCACACGTCAACTTCTTA
66 GAGATATTTTCGTAATTTTGTTA-TGAGGGCATAATAGTCCATTTGACCACAAGTCAATTTCTTA
** * * *
14755287 TCACATAATGGAAAA-TATATTTTGGTAATTT-AGTGAGGGATTATTTGGT-AATAACTAAAAGA
130 TCACATAAT-GAAAAGGGTATTTTGGTAATTTCA-T-AGGGATTATTTAGTAAATAATTATAAGA
* * * * *
14755349 GAAAAGGTATTTTCGTAACTATGGTATGAGGGAATAATAGTATATTTGGCCACATGTCAATTTCT
192 GGAAGGGTATTTTCGTAATTA-AGTATGAGAGAATAATAGTATATTTGGCCACATGTCAATTTCT
*
14755414 TATC
256 TATA
* * * * *
14755418 ATGTAAT-AAAAGGGTATTTTGGTAATTTCATAAGGGATTCTTTACTAAATAATTATAATAAAA-
1 ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGGATTATTTACTAAATAATTATAAGAAAAT
* * * * * * * ** *
14755481 GAGTTATTTTTGTAATTTTGTTGTGAGGGAAAAATATTCTATTTGGTCACATGTCAATTTCTTAT
66 GAGATATTTTCGTAATTTTGTTATGAGGGCATAATAGTCCATTTGACCACAAGTCAATTTCTTAT
*
14755546 CATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGGA
131 CACATAATGAAAAGGGTATTTTGGTAATTTCAT-AGGGATTATTTAGTAAATAATTATAAGAGGA
* * * * * *
14755611 GGGGTATTTTCGTAATTAAGATATGAGTGCATAAT-GTTTACTTGGCCACATGTCATTTTCTTAT
195 AGGGTATTTTCGTAATTAAG-TATGAGAGAATAATAGTATATTTGGCCACATGTCAATTTCTTAT
*
14755675 T
259 A
* * *
14755676 ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGTATTATTTAGTAAAGAATTATAAGAAAAT
1 ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGGATTATTTACTAAATAATTATAAGAAAAT
* * * * * **
14755741 GAG-TATATTCATCATTTTGTTATGAGAGCATAATAGTCCATTTAACCTTAAGTCAATTTCTTAT
66 GAGATATTTTCGTAATTTTGTTATGAGGGCATAATAGTCCATTTGACCACAAGTCAATTTCTTAT
* * * *
14755805 CACATAATGTCAAAGGGCATTTTAGTAATTTCATAGGAGATTAGTTAGTAAATAATTATAAGA-G
131 CACATAATG-AAAAGGGTATTTTGGTAATTTCATAGG-GATTATTTAGTAAATAATTATAAGAGG
* * * * * *
14755869 AAGGATATTTTCATAATTATAGTATGAGAGTATAATAATCTATTTTGCCACATGTCAATTTCTTA
194 AAGGGTATTTTCGTAATTA-AGTATGAGAGAATAATAGTATATTTGGCCACATGTCAATTTCTTA
14755934 TA
258 TA
* * * * * * * ** *
14755936 ATATAATGGAGAGGGCATTTTGGTGATTTAATAAGGGATTATTTAGTAAATAATGCTAAGAGAA-
1 ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGGATTATTTACTAAATAATTATAAGAAAAT
* * * * * * * * * * * * *
14756000 GGGGTATTTTTGTAAATATGATATAAAGGCATAACAGTCAATTTGGCTACATGT-AATTTTCTTA
66 GAGATATTTTCGTAATTTTGTTATGAGGGCATAATAGTCCATTTGACCACAAGTCAA-TTTCTTA
* **
14756064 TCATATAATGAAAAGGACATTTTGGTAATTTC
130 TCACATAATGAAAAGGGTATTTTGGTAATTTC
14756096 TAGCAGTATT
Statistics
Matches: 547, Mismatches: 117, Indels: 28
0.79 0.17 0.04
Matches are distributed among these distances:
257 7 0.01
258 159 0.29
259 206 0.38
260 175 0.32
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.39
Consensus pattern (259 bp):
ATATAATGAAAAGGGTATTTTGATAATTTTATAAGGGATTATTTACTAAATAATTATAAGAAAAT
GAGATATTTTCGTAATTTTGTTATGAGGGCATAATAGTCCATTTGACCACAAGTCAATTTCTTAT
CACATAATGAAAAGGGTATTTTGGTAATTTCATAGGGATTATTTAGTAAATAATTATAAGAGGAA
GGGTATTTTCGTAATTAAGTATGAGAGAATAATAGTATATTTGGCCACATGTCAATTTCTTATA
Found at i:14756107 original size:130 final size:129
Alignment explanation
Indices: 14755155--14757232 Score: 948
Period size: 130 Copynumber: 16.1 Consensus size: 129
14755145 TTTTATTGTA
* * * * * * *
14755155 TATCATATAATGGAAATGGTATTTTGATAATTTTGTAAAGGATTATTTACTAAATAATTATAAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAA-TTTCTAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * *
14755220 GATGGGATATTTTCGTAATTATGATATTG-GGGCATAATAGT-TCATTTGTCCACACGTCAACTT
65 GAAGGGGTATTTTCATAATTATGATA-TGAGAGCATAATAGTCT-ATTTGGCTACATGTCAATTT
14755283 CT
128 CT
* *** * * * * *
14755285 TATCACATAATGGAAAA-TATATTTTGGTAATTTAGTGAGGGATTATTTGGT-AATAACTAAAAG
1 TATCATATAAT-GAAAAGGGCATTTTGGTAATTT-CTAAGGGATTATTTAGTAAATAATTATAAG
** * * * * * * *
14755348 AGAAAAGGTATTTTCGTAACTATGGTATGAGGGAATAATAGTATATTTGGCCACATGTCAATTTC
64 AGAAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCTATTTGGCTACATGTCAATTTC
14755413 T
129 T
* * * * *
14755414 TATCATGTAAT-AAAAGGGTATTTTGGTAATTTCATAAGGGATTCTTTACTAAATAATTATAATA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGA
* * * ** * * * * * * *
14755478 AAAGAGTTATTTTTGTAATTTTGTTGTGAGGGAAAAATATTCTATTTGG-TCACATGTCAATTTC
65 GAAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCTATTTGGCT-ACATGTCAATTTC
14755542 T
129 T
*
14755543 TATCATATAATGAAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTC-TAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * *
14755608 GGAGGGGTATTTTCGTAATTAAGATATGAGTGCATAAT-GTTTACTTGGCCACATGTCATTTTCT
65 GAAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCTATTTGGCTACATGTCAATTTCT
* * * * * *
14755672 TATTATATAATGAAAAGGGTATTTTGATAATTTTATAAGGTATTATTTAGTAAAGAATTATAAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAA-TTTCTAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * * **
14755737 AAATGAGTATATTCATCATTTTGTTATGAGAGCATAATAGTCCATTTAACCTTA-A-GTCAATTT
65 GAAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCTATTT-GGC-TACATGTCAATTT
14755800 CT
128 CT
* * * *
14755802 TATCACATAATGTCAAAGGGCATTTTAGTAATTTC-ATAGGAGATTAGTTAGTAAATAATTATAA
1 TATCATATAATG-AAAAGGGCATTTTGGTAATTTCTA-AGG-GATTATTTAGTAAATAATTATAA
* * * * *
14755866 GAGAA-GGATATTTTCATAATTAT-AGTATGAGAGTATAATAATCTATTTTGCCACATGTCAATT
63 GAGAAGGGGTATTTTCATAATTATGA-TATGAGAGCATAATAGTCTATTTGGCTACATGTCAATT
14755929 TCT
127 TCT
* * * * * **
14755932 TATAATATAATGGAGAGGGCATTTTGGTGATTTAATAAGGGATTATTTAGTAAATAATGCTAAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTT-CTAAGGGATTATTTAGTAAATAATTATAAGA
** * * * *
14755997 GAAGGGGTATTTTTGTAAATATGATAT-AAAGGCATAACAGTCAATTTGGCTACATGT-AATTTT
65 GAAGGGGTATTTTCATAATTATGATATGAGA-GCATAATAGTCTATTTGGCTACATGTCAA-TTT
14756060 CT
128 CT
* * *
14756062 TATCATATAATGAAAAGGACATTTTGGTAATTTCT-AGCAGTATTATTTAG---AT-ACT-T---
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTCTAAG--GGATTATTTAGTAAATAATTATAAG
** * * * * * *
14756118 ---A-CCGTTTTTTCATCAA--ATAATA-G-GATGAATAGT-GTTGCAATTTTG-TACGGGAT-T
64 AGAAGGGGTATTTTCAT-AATTATGATATGAGA-GCATAATAG-T-CTATTTGGCTAC---ATGT
** *
14756172 CTTTTAATTT
122 CAATT--TCT
* * * *
14756182 TATCATATAATG-AAAGGGTATTTTGATAATTTCTTAGAGAATTATTTAGTAAATAATTATAAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTCTAAG-GGATTATTTAGTAAATAATTATAAGA
* ** ** * * * * *
14756246 GAAAGGGTATTTT--TGGTTATCTTATGAG-GAAATAATAGTCCATTTGGTTATATGTCAATTTT
65 GAAGGGGTATTTTCATAATTATGATATGAGAG-CATAATAGTCTATTTGGCTACATGTCAATTTC
14756308 T
129 T
* * * * ** * *
14756309 TATCTTGTAATGGAAAA-AGCATTTCGAAAATTT-TATAGGGGATTATTTAGTGAATAACTATAA
1 TATCATATAAT-GAAAAGGGCATTTTGGTAATTTCTA-A-GGGATTATTTAGTAAATAATTATAA
* * * ** * * * **
14756372 GAGAAGGGGTAATTTCATAATTATGGTATGTGAAAATAATTGT-TCATTTCGCCATTTGTCAATT
63 GAGAAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCT-ATTTGGCTACATGTCAATT
14756436 TCT
127 TCT
* * ** * * ** *
14756439 TATCATATAATGGAAATGAAATTTTAGCAATTTCCTAAAAGATTATTTAGTAAATAATTATAGGA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTT-CTAAGGGATTATTTAGTAAATAATTATAAGA
* * * * * *
14756504 GAAGGGGTATTTTCATAATTAT-AGTATAAAAGCATAACAGTCCATTCGGCCACATG-CAAATTT
65 GAAGGGGTATTTTCATAATTATGA-TATGAGAGCATAATAGTCTATTTGGCTACATGTC-AATTT
14756567 -T
128 CT
* * * * * ** * *
14756568 TATCATATAATTG-AAAGAGTATTTTTGTTATTTCATACGAAATCATTCT--TAAATAATTAGAA
1 TATCATATAA-TGAAAAGGGCATTTTGGTAATTTC-TAAGGGATTATT-TAGTAAATAATTATAA
* * * * * ** * * * *
14756630 GAAAAGGGATATATTTTCCTAATTATGGTATGA-AGGCATAATACTAAATTTGACAACGTGTCAC
63 GAGAAGGG--GTATTTTCATAATTATGATATGAGA-GCATAATAGTCTATTTGGCTACATGTCAA
14756694 TTTCT
125 TTTCT
* * * * ** *
14756699 AATCATATAACGGAAATGGTTTTTTCGTAATTTC-ATAGGAGATTATTTCA-TAAATAATTATAA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTCTA-AGG-GATTATTT-AGTAAATAATTATAA
* ** * * * * * *
14756762 GATAATAGATATTTTCAAAACTATGGTATG-GTTGCATAATAGT-TCATATGG-TCACATGTCAA
63 GAGAAGGGGTATTTTCATAATTATGATATGAG-AGCATAATAGTCT-ATTTGGCT-ACATGTCAA
*
14756824 TTTTT
125 TTTCT
* * *** * * * *
14756829 TATCATATAATGGATAGGGCATTTCAATAATTTC-ATAGGTATTATTTTGTAAATAACTATTAGA
1 TATCATATAATGAAAAGGGCATTTTGGTAATTTCTA-AGGGATTATTTAGTAAATAATTATAAGA
* * * * * * * * *
14756893 GAAAGGGTATACTT-GTAGTTATGGTATGAAAG-ATTGACAGTCAATTTGG-T-CATGTGTCAAT
65 GAAGGGGTAT-TTTCATAATTATGATATGAGAGCA-TAATAGTCTATTTGGCTACA--TGTCAAT
14756954 TT-T
126 TTCT
* * ** * *
14756957 GTATCATATAATGTACATAGCATTTTAGTAATTTCTTGAA-GGATTATTTAGTAAATAAATATAA
1 -TATCATATAATGAAAAGGGCATTTTGGTAATTTC-T-AAGGGATTATTTAGTAAATAATTATAA
* * * * *
14757021 GAAAAGGGATA-TTTCATAATTGTGGTATGAG-GCCATAATAGTCCT-TTTGG-TCACATTTC-A
63 GAGAAGGGGTATTTTCATAATTATGATATGAGAG-CATAATAGT-CTATTTGGCT-ACATGTCAA
14757081 TTTCT
125 TTTCT
* *
14757086 TATCATATAATGGGAAAA-GGCATTTTGGTAATTTC-ATAGGCGATTTTTTAGTAAATAATTACA
1 TATCATATAAT--GAAAAGGGCATTTTGGTAATTTCTA-AGG-GATTATTTAGTAAATAATTATA
* ** * * * * *
14757149 AAAGAAGGGGTATTTTGGTAATTATGACATGA-AGGCATAATTA-TCCATTTGGCCACTTGTTAA
62 AGAGAAGGGGTATTTTCATAATTATGATATGAGA-GCATAA-TAGTCTATTTGGCTACATGTCAA
14757212 CTTT-T
125 -TTTCT
14757217 TATCATATAATGAAAA
1 TATCATATAATGAAAA
14757233 AATATTTCAA
Statistics
Matches: 1473, Mismatches: 353, Indels: 245
0.71 0.17 0.12
Matches are distributed among these distances:
115 1 0.00
116 9 0.01
117 12 0.01
118 10 0.01
119 35 0.02
120 16 0.01
122 2 0.00
123 2 0.00
124 1 0.00
125 1 0.00
126 2 0.00
127 22 0.01
128 121 0.08
129 507 0.34
130 593 0.40
131 113 0.08
132 26 0.02
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
TATCATATAATGAAAAGGGCATTTTGGTAATTTCTAAGGGATTATTTAGTAAATAATTATAAGAG
AAGGGGTATTTTCATAATTATGATATGAGAGCATAATAGTCTATTTGGCTACATGTCAATTTCT
Found at i:14757047 original size:129 final size:129
Alignment explanation
Indices: 14756818--14757050 Score: 283
Period size: 129 Copynumber: 1.8 Consensus size: 129
14756808 TATGGTCACA
* * * *
14756818 TGTCAATTTTTTATCATATAATGGATAGGGCATTTCAATAATTTCATAGGTATTATTTTGTAAAT
1 TGTCAATTTTGTATCATATAATGGACAGAGCATTTCAATAATTTCATAGGTATTATTTAGTAAAT
* * * *
14756883 AACTATTAGAGAAAGGGTATACTTGTAGTTATGGTATGAAAGATTGACAGTCAATTTGGTCATG
66 AAATATAAGAGAAAGGGTATACTTATAATTATGGTATGAAAGATTGACAGTCAATTTGGTCATG
* * * * *
14756947 TGTCAATTTTGTATCATATAATGTACATAGCATTTTAGTAATTTCTTGAAGG-ATTATTTAGTAA
1 TGTCAATTTTGTATCATATAATGGACAGAGCATTTCAATAATTTCAT--AGGTATTATTTAGTAA
* *
14757011 ATAAATATAAGA-AAAGGG-ATATTTCATAATTGTGGTATGA
64 ATAAATATAAGAGAAAGGGTATACTT-ATAATTATGGTATGA
14757051 GGCCATAATA
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
128 5 0.06
129 57 0.66
130 21 0.24
131 3 0.03
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (129 bp):
TGTCAATTTTGTATCATATAATGGACAGAGCATTTCAATAATTTCATAGGTATTATTTAGTAAAT
AAATATAAGAGAAAGGGTATACTTATAATTATGGTATGAAAGATTGACAGTCAATTTGGTCATG
Found at i:14760900 original size:16 final size:16
Alignment explanation
Indices: 14760879--14760912 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14760869 TTAATGTTGT
*
14760879 TTTACGTAACTACATG
1 TTTACGCAACTACATG
*
14760895 TTTACGCAATTACATG
1 TTTACGCAACTACATG
14760911 TT
1 TT
14760913 CAGTTTATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTACGCAACTACATG
Found at i:14761064 original size:21 final size:21
Alignment explanation
Indices: 14761020--14761067 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
14761010 GGTTCTTGTA
*
14761020 TAATTTAAGTTTTGGTTTATCT
1 TAATTTAAG-TTTGGTTCATCT
14761042 TAATTTAAG-TTGGTTGCATCT
1 TAATTTAAGTTTGGTT-CATCT
14761063 TAATT
1 TAATT
14761068 CATAAGTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 9 0.38
22 9 0.38
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.54
Consensus pattern (21 bp):
TAATTTAAGTTTGGTTCATCT
Found at i:14763299 original size:54 final size:54
Alignment explanation
Indices: 14763187--14763299 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
14763177 TGAAATATTT
* * * * * * *
14763187 TAATATTTTCATAATAAATATTACTTTTTTAATATTATTAACAATAAATAAAAT
1 TAATAGTTTAATAATAAATAGTACTATATTAATATTATTAACAATAAACAAAAA
* * *
14763241 TAATAGTTTAATAATAAATAGTGCTATATTACTATT-TTAATAATAAACAATAAA
1 TAATAGTTTAATAATAAATAGTACTATATTAATATTATTAACAATAAACAA-AAA
14763295 TAATA
1 TAATA
14763300 CTTTTTAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 12 0.25
54 36 0.75
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (54 bp):
TAATAGTTTAATAATAAATAGTACTATATTAATATTATTAACAATAAACAAAAA
Found at i:14763511 original size:17 final size:17
Alignment explanation
Indices: 14763489--14763527 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
14763479 ATTTCATAAC
14763489 AAATATTTTCAATATAT
1 AAATATTTTCAATATAT
*
14763506 AAATATTTTTAATATAT
1 AAATATTTTCAATATAT
*
14763523 TAATA
1 AAATA
14763528 ATAAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATATTTTCAATATAT
Found at i:14763532 original size:24 final size:26
Alignment explanation
Indices: 14763490--14763537 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
14763480 TTTCATAACA
*
14763490 AATATTTTCAATATATAAATATTTTT
1 AATATATTCAATATATAAATATTTTT
14763516 AATATATT-AATA-ATAAATATTT
1 AATATATTCAATATATAAATATTT
14763538 CTATTTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.48
25 4 0.19
26 7 0.33
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
AATATATTCAATATATAAATATTTTT
Found at i:14763653 original size:17 final size:17
Alignment explanation
Indices: 14763631--14763663 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14763621 TTTAGTAAAT
14763631 ACTATTATTAAAATATA
1 ACTATTATTAAAATATA
*
14763648 ACTATTTTTAAAATAT
1 ACTATTATTAAAATAT
14763664 TGATATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
ACTATTATTAAAATATA
Found at i:14764089 original size:19 final size:19
Alignment explanation
Indices: 14764065--14764101 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14764055 AATTATTTGA
14764065 AAATGTTGATATTTTTTAG
1 AAATGTTGATATTTTTTAG
*
14764084 AAATGTTTATATTTTTTA
1 AAATGTTGATATTTTTTA
14764102 TTGTTTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
AAATGTTGATATTTTTTAG
Found at i:14767298 original size:19 final size:18
Alignment explanation
Indices: 14767274--14767316 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
14767264 AATAGTTTTG
14767274 ATTTTTATATATATT-TTAT
1 ATTTTTAT-T-TATTATTAT
14767293 ATTTTTATTTATTATTAT
1 ATTTTTATTTATTATTAT
14767311 ATTTTT
1 ATTTTT
14767317 TAAGATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 8 0.35
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTTATTTATTATTAT
Found at i:14767317 original size:19 final size:18
Alignment explanation
Indices: 14767274--14767332 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
14767264 AATAGTTTTG
14767274 ATTTTTATATATATTTTAT
1 ATTTTT-TATATATTTTAT
*
14767293 A-TTTTTATTTATTATTAT
1 ATTTTTTATATATT-TTAT
*
14767311 ATTTTTTA-AGATTTTAAT
1 ATTTTTTATATATTTT-AT
14767329 ATTT
1 ATTT
14767333 ATTTCTGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 9 0.26
18 18 0.53
19 7 0.21
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
ATTTTTTATATATTTTAT
Found at i:14769611 original size:26 final size:26
Alignment explanation
Indices: 14769555--14769605 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14769545 TATTTATTTC
*
14769555 AATTTAAATAATTATCTAAAATATTA
1 AATTTAAATAATTATCTAAAAAATTA
14769581 AATTTAAATAATTTAT-TAAAAAATT
1 AATTTAAATAA-TTATCTAAAAAATT
14769606 TTATTTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
AATTTAAATAATTATCTAAAAAATTA
Found at i:14769721 original size:5 final size:5
Alignment explanation
Indices: 14769711--14769739 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14769701 CCTTGTATGT
14769711 TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
14769740 TTAGAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:14769747 original size:15 final size:15
Alignment explanation
Indices: 14769714--14769747 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14769704 TGTATGTTAT
*
14769714 AATATAATATAATAT
1 AATATAATATAATAG
*
14769729 AATATAATATATTAG
1 AATATAATATAATAG
14769744 AATA
1 AATA
14769748 AAACATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AATATAATATAATAG
Found at i:14769999 original size:18 final size:17
Alignment explanation
Indices: 14769978--14770013 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14769968 TATCTAAAAA
14769978 TATTAAATTAAAATAATT
1 TATTAAA-TAAAATAATT
*
14769996 TATTAAATAAAATTATT
1 TATTAAATAAAATAATT
14770013 T
1 T
14770014 GACAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTAAATAAAATAATT
Found at i:14770319 original size:2 final size:2
Alignment explanation
Indices: 14770307--14770335 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14770297 GTATGTTGTA
14770307 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14770336 TAGATTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14770442 original size:595 final size:592
Alignment explanation
Indices: 14769205--14770339 Score: 1702
Period size: 593 Copynumber: 1.9 Consensus size: 592
14769195 CTAATTTTTT
* * * * ** * *
14769205 TATCAACATTCAAATATCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAAATATA
1 TATCAACATTCAAATATCTTAGATTTTCAAATAAAAATAAAAACTTTTATTACTTTAAAAATACA
*
14769270 TGCTTTCCAATAAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATATCTATTAAATAAT
66 TACTTTCCAATAAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATATCTATTAAATAAT
* * * *
14769335 TTTTAATTTTTTATAAATTTTTATTTGAATTTAAATAATTATCCAAAAATATTAAATTTAAATAA
131 TTTCAATTTTTGATAAATTTTTATTTAAATTTAAATAATTATCCAAAAATATTAAATTAAAATAA
* * *
14769400 TTTATTAAATAGAATTATTTGACAAAAATAAAATTTTATTAAGTATATATATTTGGAGCTACCAT
196 TTTATTAAATAAAATTATTTGACAAAAATAAAATTTTATTAAGTATATATATTTGAAACTACCAT
* *
14769465 TAAATTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATCTTATGCAACAATT
261 TAAATTTAAAAAGAAAAGATAAATTATAATTTAATATATTTGAATTCAAATCTTATGCAAAAATT
* * *
14769530 TCAATTTTAGATAGATATTTATTTCAATTTAAATAATTATCTAAAATATTAAATTTAAATAATTT
326 TCAATCTTAGATAGATATTGATTTCAATTTAAACAATTATCTAAAATATTAAATTTAAATAATTT
* *
14769595 ATTAAAAAATTTTATTTGATAAATAAAATAATATAAATATTATCTTATGTGTCATTAAAAGATAT
391 ATTAAAAAATTTTATTTGATAAATAAAATAATATAAATATTATCCTATGTGTCATTAAAAGAGAT
* *
14769660 TATCTACCTAAGCATCAACATAATCAATTTTGATCATGTAACCTTGTATGTTATAATATAATATA
456 TATCCACCTAAGCATCAACATAAGCAATTTTGATCATGTAACCTTGTATGTTATAATATAATATA
*** * ** *
14769725 ATATAATATAATATATTAGAATAAAACATTATATTTGTTTTCAAAGCAAAAACGTATTTTTATCT
521 ATATAATATAATATATTAGAATAAAACATTATATAAATTATCAAAG-AAAAACGTATAATTATCA
* **
14769790 AACTTTTT
585 AAATTTGG
* * * * ** *
14769798 TATCAACATTCAAATGTCTTATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAAATACA
1 TATCAACATTCAAATATCTTAGATTTTCAAATAAAAATAAAAACTTTTATTACTTTAAAAATACA
* * *
14769863 TACTTTCTAGTCAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATAATCTATTAAATAA
66 TACTTTCCAATAAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAAT-ATCTATTAAATAA
*
14769928 TTTTCAATTTTTGATAAATTTTTATTTAAATTTAAATAATTATCTAAAAATATTAAATTAAAATA
130 TTTTCAATTTTTGATAAATTTTTATTTAAATTTAAATAATTATCCAAAAATATTAAATTAAAATA
* **
14769993 ATTTATTAAATAAAATTATTTGACAAAAAATAAAATTTTATTAAGTATATATATTTGAAATTGTC
195 ATTTATTAAATAAAATTATTTGAC-AAAAATAAAATTTTATTAAGTATATATATTTGAAACTACC
14770058 ATTAAATTTAAAAAGAAAAGATAAATTATAATTTAATATATTTGAATTCAAATCTTATGCAAAAA
259 ATTAAATTTAAAAAGAAAAGATAAATTATAATTTAATATATTTGAATTCAAATCTTATGCAAAAA
* *
14770123 TTTCAATCTTAGATAGATATTGATTTTAATTTAAACAATTATC-AAAATA-TCAATTTAAATAAT
324 TTTCAATCTTAGATAGATATTGATTTCAATTTAAACAATTATCTAAAATATTAAATTTAAATAAT
14770186 TTATTAAAAAATTTTATTTGATAAAT-AAATAATATAAATATTATCCTATGTGTCATTAAAAGAG
389 TTATTAAAAAATTTTATTTGATAAATAAAATAATATAAATATTATCCTATGTGTCATTAAAAGAG
* *
14770250 ATTATCCACCT-AGACATCCACATAAGCAATTTTGATCATGTAACCTTGTATGTTGTAATATAAT
454 ATTATCCACCTAAG-CATCAACATAAGCAATTTTGATCATGTAACCTTGTATGTTATAATATAAT
14770314 ATATATATATATATATATATATTAGA
518 ATA-ATATA-ATATA-ATATATTAGA
14770340 TTGAATTGAT
Statistics
Matches: 505, Mismatches: 31, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
591 2 0.00
592 96 0.19
593 153 0.30
594 107 0.21
595 147 0.29
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.42
Consensus pattern (592 bp):
TATCAACATTCAAATATCTTAGATTTTCAAATAAAAATAAAAACTTTTATTACTTTAAAAATACA
TACTTTCCAATAAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATATCTATTAAATAAT
TTTCAATTTTTGATAAATTTTTATTTAAATTTAAATAATTATCCAAAAATATTAAATTAAAATAA
TTTATTAAATAAAATTATTTGACAAAAATAAAATTTTATTAAGTATATATATTTGAAACTACCAT
TAAATTTAAAAAGAAAAGATAAATTATAATTTAATATATTTGAATTCAAATCTTATGCAAAAATT
TCAATCTTAGATAGATATTGATTTCAATTTAAACAATTATCTAAAATATTAAATTTAAATAATTT
ATTAAAAAATTTTATTTGATAAATAAAATAATATAAATATTATCCTATGTGTCATTAAAAGAGAT
TATCCACCTAAGCATCAACATAAGCAATTTTGATCATGTAACCTTGTATGTTATAATATAATATA
ATATAATATAATATATTAGAATAAAACATTATATAAATTATCAAAGAAAAACGTATAATTATCAA
AATTTGG
Found at i:14774722 original size:18 final size:18
Alignment explanation
Indices: 14774695--14774732 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14774685 GAGCATATAG
*
14774695 TTATTTTTTCTATCAAAC
1 TTATTATTTCTATCAAAC
14774713 TTATTATTTCTATCAAAC
1 TTATTATTTCTATCAAAC
14774731 TT
1 TT
14774733 CCTACTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATTATTTCTATCAAAC
Found at i:14776393 original size:19 final size:20
Alignment explanation
Indices: 14776341--14776396 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 20
14776331 TTTTAAATAA
*
14776341 TAAATAAATCAATTAAACAAT
1 TAAATAAAT-AAATAAACAAT
14776362 TAAA-AACCA-AAATAAA-AAT
1 TAAATAA--ATAAATAAACAAT
14776381 TAAATAAATAAATAAA
1 TAAATAAATAAATAAA
14776397 TTGAAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
18 1 0.03
19 14 0.47
20 10 0.33
21 4 0.13
22 1 0.03
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAATAAATAAATAAACAAT
Found at i:14776798 original size:19 final size:19
Alignment explanation
Indices: 14776771--14776807 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14776761 TTTTTATCTT
*
14776771 AAATCAAATTTAAATAAAA
1 AAATAAAATTTAAATAAAA
*
14776790 AAATAAAATTTAATTAAA
1 AAATAAAATTTAAATAAA
14776808 TTTAAACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATAAAATTTAAATAAAA
Found at i:14776812 original size:6 final size:6
Alignment explanation
Indices: 14776795--14776855 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
14776785 TAAAAAAATA
* * *
14776795 AAATTT -AA-TT AAATTT AAA-CT AAATTTT AAATAAT AAATTT AAAATT
1 AAATTT AAATTT AAATTT AAATTT AAA-TTT AAAT-TT AAATTT AAATTT
14776842 AAATTT AAATTT AA
1 AAATTT AAATTT AA
14776856 TATTATATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
4 2 0.05
5 8 0.18
6 25 0.57
7 9 0.20
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (6 bp):
AAATTT
Found at i:14776832 original size:25 final size:25
Alignment explanation
Indices: 14776804--14776851 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14776794 AAAATTTAAT
14776804 TAAATTT-AAACTAAATTTTAAATAA
1 TAAATTTAAAACTAAA-TTTAAATAA
*
14776829 TAAATTTAAAATTAAATTTAAAT
1 TAAATTTAAAACTAAATTTAAAT
14776852 TTAATATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
TAAATTTAAAACTAAATTTAAATAA
Found at i:14776855 original size:12 final size:11
Alignment explanation
Indices: 14776769--14776866 Score: 69
Period size: 12 Copynumber: 8.8 Consensus size: 11
14776759 TTTTTTTATC
*
14776769 TTAAATCAAAT
1 TTAAATTAAAT
14776780 TTAAA-TAAA-
1 TTAAATTAAAT
* *
14776789 -AAAATAAAAT
1 TTAAATTAAAT
14776799 TT-AATTAAAT
1 TTAAATTAAAT
*
14776809 TTAAACTAAATT
1 TTAAATTAAA-T
14776821 TTAAATAATAAAT
1 TTAAAT--TAAAT
14776834 TTAAAATTAAAT
1 TT-AAATTAAAT
*
14776846 TTAAATTTAAT
1 TTAAATTAAAT
*
14776857 ATTATATTAA
1 -TTAAATTAA
14776867 CTTGAATTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
8 3 0.04
9 3 0.04
10 12 0.18
11 19 0.28
12 20 0.29
13 3 0.04
14 8 0.12
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:14779271 original size:19 final size:17
Alignment explanation
Indices: 14779249--14779283 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
14779239 TCTTTATCTT
14779249 TTATTTATTTCATTTTTTG
1 TTATTT-TTT-ATTTTTTG
14779268 TTATTTTTTATTTTTT
1 TTATTTTTTATTTTTT
14779284 AGGAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (17 bp):
TTATTTTTTATTTTTTG
Found at i:14783902 original size:161 final size:161
Alignment explanation
Indices: 14783720--14784032 Score: 617
Period size: 161 Copynumber: 1.9 Consensus size: 161
14783710 GTTAAGGTAT
14783720 ATTCATTCAACAAAACTATTATATGACTACTACAAAAATTCAAGCAAATCTTAAGCCACCACAGA
1 ATTCATTCAACAAAACTATTATATGACTACTACAAAAATTCAAGCAAATCTTAAGCCACCACAGA
14783785 AGAAACCATAAAATGAAGACATGATAAGTACTTTTGAGAGTGACATTAAAGACCGCCAGCCCAAC
66 AGAAACCATAAAATGAAGACATGATAAGTACTTTTGAGAGTGACATTAAAGACCGCCAGCCCAAC
14783850 TACACCATAAAACAATGATAAAACTATATTC
131 TACACCATAAAACAATGATAAAACTATATTC
*
14783881 ATTCATTCAACAAAACTATTATATGACTACTACAAAAATTCAAGCAAATCTTAAGCCACCACGGA
1 ATTCATTCAACAAAACTATTATATGACTACTACAAAAATTCAAGCAAATCTTAAGCCACCACAGA
14783946 AGAAACCATAAAATGAAGACATGATAAGTACTTTTGAGAGTGACATTAAAGACCGCCAGCCCAAC
66 AGAAACCATAAAATGAAGACATGATAAGTACTTTTGAGAGTGACATTAAAGACCGCCAGCCCAAC
14784011 TACACCATAAAACAATGATAAA
131 TACACCATAAAACAATGATAAA
14784033 TGATCAAGAA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 151 1.00
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.22
Consensus pattern (161 bp):
ATTCATTCAACAAAACTATTATATGACTACTACAAAAATTCAAGCAAATCTTAAGCCACCACAGA
AGAAACCATAAAATGAAGACATGATAAGTACTTTTGAGAGTGACATTAAAGACCGCCAGCCCAAC
TACACCATAAAACAATGATAAAACTATATTC
Done.