Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 78 of 84
Found at i:16839743 original size:11 final size:11
Alignment explanation
Indices: 16839727--16839753 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
16839717 TGATAATTAG
16839727 CATATTTGTTT
1 CATATTTGTTT
16839738 CATATTTGTTT
1 CATATTTGTTT
16839749 CATAT
1 CATAT
16839754 CAATACGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.11, G:0.07, T:0.59
Consensus pattern (11 bp):
CATATTTGTTT
Found at i:16840346 original size:13 final size:13
Alignment explanation
Indices: 16840328--16840352 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16840318 ATTTGTTTCT
16840328 TTTTTTATTATTA
1 TTTTTTATTATTA
16840341 TTTTTTATTATT
1 TTTTTTATTATT
16840353 TAATAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTATTATTA
Found at i:16841752 original size:11 final size:11
Alignment explanation
Indices: 16841715--16841773 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
16841705 TATAAAACAA
16841715 TATATTT-TAT
1 TATATTTATAT
*
16841725 TATTAATTTAATTT
1 TA-T-ATTT-ATAT
16841739 TATATTTATAT
1 TATATTTATAT
16841750 TATATTTATA-
1 TATATTTATAT
*
16841760 TATTTATTATAT
1 TATAT-TTATAT
16841772 TA
1 TA
16841774 ATAAAATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 6 0.15
11 19 0.47
12 10 0.25
13 1 0.03
14 4 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTTATAT
Found at i:16841757 original size:17 final size:17
Alignment explanation
Indices: 16841737--16841786 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
16841727 TTAATTTAAT
16841737 TTTATAT-TTATATTATA
1 TTTATATATT-TATTATA
16841754 TTTATATATTTATTATA
1 TTTATATATTTATTATA
* * *
16841771 TTAATAAAATTATTAT
1 TTTATATATTTATTAT
16841787 TTATAACTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 27 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATATATTTATTATA
Found at i:16841761 original size:19 final size:17
Alignment explanation
Indices: 16841715--16841772 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
16841705 TATAAAACAA
*
16841715 TATATTTTATTATTAATT
1 TATATTTTA-TATTTATT
16841733 TA-ATTTTATATTTATAT
1 TATATTTTATATTTAT-T
16841750 TATATTTATATATTTA-T
1 TATATTT-TATATTTATT
16841767 TATATT
1 TATATT
16841773 AATAAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
16 6 0.17
17 16 0.44
18 6 0.17
19 8 0.22
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATTTTATATTTATT
Found at i:16843580 original size:12 final size:12
Alignment explanation
Indices: 16843563--16843601 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
16843553 TAGTGAAACA
16843563 TGCTGTTGTTGT
1 TGCTGTTGTTGT
16843575 TGCTGTTGTTGT
1 TGCTGTTGTTGT
* *
16843587 TGCTGCTGTGGT
1 TGCTGTTGTTGT
16843599 TGC
1 TGC
16843602 ATCGTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.13, G:0.36, T:0.51
Consensus pattern (12 bp):
TGCTGTTGTTGT
Found at i:16843586 original size:15 final size:15
Alignment explanation
Indices: 16843566--16843600 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16843556 TGAAACATGC
*
16843566 TGTTGTTGTTGCTGT
1 TGTTGTTGCTGCTGT
16843581 TGTTGTTGCTGCTGT
1 TGTTGTTGCTGCTGT
*
16843596 GGTTG
1 TGTTG
16843601 CATCGTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.09, G:0.37, T:0.54
Consensus pattern (15 bp):
TGTTGTTGCTGCTGT
Found at i:16844084 original size:38 final size:38
Alignment explanation
Indices: 16844033--16844109 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
16844023 CAGTAGATAC
16844033 AAAAACCAATTACATATACAGCTTCTAGAGCACCAAAG
1 AAAAACCAATTACATATACAGCTTCTAGAGCACCAAAG
16844071 AAAAACCAATTACATATACAGCTTCTAGAGCACCAAAG
1 AAAAACCAATTACATATACAGCTTCTAGAGCACCAAAG
16844109 A
1 A
16844110 CATATCTGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.48, C:0.23, G:0.10, T:0.18
Consensus pattern (38 bp):
AAAAACCAATTACATATACAGCTTCTAGAGCACCAAAG
Found at i:16850022 original size:55 final size:55
Alignment explanation
Indices: 16849920--16850025 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
16849910 CCAGCCAAAT
* * **
16849920 CATAGAAACCAACGCTAAATACATTCATCTAAAATTCTATTGTACTTCAATTAAC
1 CATAGAAACCAACGCTAAATACATTCATCTAAAATCCCATTAAACTTCAATTAAC
* * *
16849975 CATAGAAATCAATGCTGAAA-ACATTCGTCTAAAATCCCATTAAACTTCAAT
1 CATAGAAACCAACGCT-AAATACATTCATCTAAAATCCCATTAAACTTCAAT
16850026 AACTTCAACT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 40 0.93
56 3 0.07
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (55 bp):
CATAGAAACCAACGCTAAATACATTCATCTAAAATCCCATTAAACTTCAATTAAC
Found at i:16851735 original size:23 final size:22
Alignment explanation
Indices: 16851709--16851753 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
16851699 AATTATTAAA
16851709 TTTTTTAATTTATATTTTAATAT
1 TTTTTTAATTT-TATTTTAATAT
*
16851732 TTTTTTAATTTTATTTTTATAT
1 TTTTTTAATTTTATTTTAATAT
16851754 ATAATTAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTTAATTTTATTTTAATAT
Found at i:16851761 original size:22 final size:23
Alignment explanation
Indices: 16851713--16851761 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
16851703 ATTAAATTTT
* **
16851713 TTAATTTATATTTTAATATTTTT
1 TTAATTTATATTTTAATATATAA
*
16851736 TTAATTT-TATTTTTATATATAA
1 TTAATTTATATTTTAATATATAA
16851758 TTAA
1 TTAA
16851762 CAATCTAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TTAATTTATATTTTAATATATAA
Found at i:16851777 original size:5 final size:5
Alignment explanation
Indices: 16851767--16851793 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
16851757 ATTAACAATC
16851767 TAATT TAATT TAATT TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TA
16851794 TTATGCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:16860692 original size:2 final size:2
Alignment explanation
Indices: 16860687--16860717 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
16860677 ATATATTTAT
16860687 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
16860718 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:16860722 original size:2 final size:2
Alignment explanation
Indices: 16860717--16860741 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16860707 ACACACACAC
16860717 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
16860742 AATTAGCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16861905 original size:21 final size:24
Alignment explanation
Indices: 16861878--16861926 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
16861868 ATATACAATA
* *
16861878 AATTTTAT-TATATAAA-ATTTTT
1 AATTTAATATATATAAATAATTTT
16861900 AATTTAATATATATAAATAATTTT
1 AATTTAATATATATAAATAATTTT
16861924 AAT
1 AAT
16861927 CATTTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 8 0.35
24 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTTAATATATATAAATAATTTT
Found at i:16862118 original size:20 final size:21
Alignment explanation
Indices: 16862093--16862138 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
16862083 CCAATCTCAC
* *
16862093 ATTATAATAATTAAT-TTATT
1 ATTATAATAATAAATGTTACT
16862113 ATTATAATAATAAATGTTACT
1 ATTATAATAATAAATGTTACT
16862134 ATTAT
1 ATTAT
16862139 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTATAATAATAAATGTTACT
Found at i:16863318 original size:17 final size:18
Alignment explanation
Indices: 16863298--16863331 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16863288 CATTAAAAAT
*
16863298 AATCTTAAAAC-TAATTA
1 AATCTAAAAACATAATTA
16863315 AATCTAAAAACATAATT
1 AATCTAAAAACATAATT
16863332 CAAGAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (18 bp):
AATCTAAAAACATAATTA
Found at i:16868156 original size:63 final size:63
Alignment explanation
Indices: 16868057--16868176 Score: 222
Period size: 63 Copynumber: 1.9 Consensus size: 63
16868047 ATAGAAAAAA
*
16868057 AAAAAACCTAACCATATTATTACATGTTAAATGCAACATTAATACATTTCATTTGAAGTAATG
1 AAAAAACCTAACCATATTATTACATGCTAAATGCAACATTAATACATTTCATTTGAAGTAATG
*
16868120 AAAAAATCTAACCATATTATTACATGCTAAATGCAACATTAATACATTTCATTTGAA
1 AAAAAACCTAACCATATTATTACATGCTAAATGCAACATTAATACATTTCATTTGAA
16868177 AAGCCAACTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (63 bp):
AAAAAACCTAACCATATTATTACATGCTAAATGCAACATTAATACATTTCATTTGAAGTAATG
Found at i:16873683 original size:39 final size:39
Alignment explanation
Indices: 16873639--16873716 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
16873629 AACCTTGGGA
16873639 GATAAATCAAGAACAATTCTGCAGTAAACCAGGGTCTAT
1 GATAAATCAAGAACAATTCTGCAGTAAACCAGGGTCTAT
16873678 GATAAATCAAGAACAATTCTGCAGTAAACCAGGGTCTAT
1 GATAAATCAAGAACAATTCTGCAGTAAACCAGGGTCTAT
16873717 TAACACAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (39 bp):
GATAAATCAAGAACAATTCTGCAGTAAACCAGGGTCTAT
Found at i:16880039 original size:13 final size:15
Alignment explanation
Indices: 16880005--16880035 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
16879995 TTCAAGTTTT
16880005 TTATTT-TAATTGAA
1 TTATTTATAATTGAA
16880019 TTATTTATAATTGAA
1 TTATTTATAATTGAA
16880034 TT
1 TT
16880036 TTATTGATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
TTATTTATAATTGAA
Found at i:16881107 original size:22 final size:21
Alignment explanation
Indices: 16881082--16881131 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
16881072 AGAAAAACAA
16881082 ATAAATTAATTAAATATATAAT
1 ATAAATTAATTAAAT-TATAAT
* * *
16881104 ATAAAAATATTTGAATTATAAT
1 AT-AAATTAATTAAATTATAAT
16881126 ATAAAT
1 ATAAAT
16881132 AAAACATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.13
22 10 0.43
23 10 0.43
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
ATAAATTAATTAAATTATAAT
Found at i:16881810 original size:28 final size:27
Alignment explanation
Indices: 16881756--16881810 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
16881746 TTTTGATTCG
*
16881756 AATTTAAATAATTATTCAAAAACATTA
1 AATTTAAATAATTATTCAAAAAAATTA
16881783 AATTTAAATAATTTATT-AAATAAAATTA
1 AATTTAAATAA-TTATTCAAA-AAAATTA
16881811 TTTGATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
AATTTAAATAATTATTCAAAAAAATTA
Found at i:16881985 original size:48 final size:47
Alignment explanation
Indices: 16881896--16881989 Score: 109
Period size: 48 Copynumber: 2.0 Consensus size: 47
16881886 TGATTTAATA
* * * * * *
16881896 GATTTGAATTTAAAATTTATGCAAAATTTTCAGTTTCAAATAGATTTT
1 GATTTAAATTTAAAAATTATCCAAAATATTAAATTTCAAATA-ATTTT
16881944 GATTTAAATTTAAATAATTATCCAAAATATTAAATTT-AAATAATTT
1 GATTTAAATTTAAA-AATTATCCAAAATATTAAATTTCAAATAATTT
16881990 ATTAAAGAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
47 4 0.10
48 18 0.46
49 17 0.44
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (47 bp):
GATTTAAATTTAAAAATTATCCAAAATATTAAATTTCAAATAATTTT
Found at i:16888175 original size:18 final size:18
Alignment explanation
Indices: 16888137--16888171 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
16888127 TTTGTGAATT
16888137 TTTTTGAATTTTAATAAA
1 TTTTTGAATTTTAATAAA
*
16888155 TTTTT-AATTTTATTAAA
1 TTTTTGAATTTTAATAAA
16888172 ATTTCCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTTTGAATTTTAATAAA
Found at i:16888182 original size:44 final size:44
Alignment explanation
Indices: 16888134--16888219 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
16888124 GTTTTTGTGA
*
16888134 ATTTTTTTGAATTTTAATAAATTTTTA-ATTTTATTAAAATTTCC
1 ATTTTATTGAATTTTAA-AAATTTTTATATTTTATTAAAATTTCC
* * *
16888178 ATTTTATTGAATTTTCAAATTTTTTATTTTTTATTAAAATTT
1 ATTTTATTGAATTTTAAAAATTTTTATATTTTATTAAAATTT
16888220 TGGGATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 8 0.22
44 29 0.78
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (44 bp):
ATTTTATTGAATTTTAAAAATTTTTATATTTTATTAAAATTTCC
Found at i:16888256 original size:24 final size:25
Alignment explanation
Indices: 16888224--16888308 Score: 86
Period size: 24 Copynumber: 3.4 Consensus size: 25
16888214 AAATTTTGGG
16888224 ATTTTTTAAAATTTTT-AAGT-TTTC
1 ATTTTTT-AAATTTTTAAAGTATTTC
*
16888248 ATTTTTT-AATTTTTAAATTATTTC
1 ATTTTTTAAATTTTTAAAGTATTTC
* * *
16888272 ATTTTTTATAATTTATAAAATATTCC
1 ATTTTTTA-AATTTTTAAAGTATTTC
16888298 AGTTTTTTAAA
1 A-TTTTTTAAA
16888309 AAATTTTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
22 7 0.13
23 3 0.06
24 18 0.35
26 17 0.33
27 7 0.13
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (25 bp):
ATTTTTTAAATTTTTAAAGTATTTC
Found at i:16888278 original size:26 final size:26
Alignment explanation
Indices: 16888249--16888305 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16888239 TAAGTTTTCA
* * *
16888249 TTTTTTAATTTTTAAATTATTTCA-T
1 TTTTTTAATTTATAAAATATTCCAGT
16888274 TTTTTATAATTTATAAAATATTCCAGT
1 TTTTT-TAATTTATAAAATATTCCAGT
16888301 TTTTT
1 TTTTT
16888306 AAAAAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 5 0.19
26 16 0.59
27 6 0.22
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTTTAATTTATAAAATATTCCAGT
Found at i:16895836 original size:37 final size:37
Alignment explanation
Indices: 16895794--16895877 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
16895784 TATATATTTT
* * *
16895794 AAATTTTTATAAA-A-TAAAAATAACTATTTTATATTAA
1 AAATTTTTAAAAATATTAAAAATAA-TA-TTAAAATTAA
*
16895831 AAATTTTAAAAAATATTAAAAATAATATTAAAATTAA
1 AAATTTTTAAAAATATTAAAAATAATATTAAAATTAA
*
16895868 AAAATTTTAA
1 AAATTTTTAA
16895878 CATAATGAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 27 0.69
38 3 0.08
39 9 0.23
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (37 bp):
AAATTTTTAAAAATATTAAAAATAATATTAAAATTAA
Found at i:16897319 original size:16 final size:16
Alignment explanation
Indices: 16897298--16897342 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
16897288 ATTATTTTTT
*
16897298 AAATATAAATATTTAA
1 AAATATAAATATATAA
*
16897314 AAATATAATTATATAA
1 AAATATAAATATATAA
16897330 ATATATATAAATA
1 A-A-ATATAAATA
16897343 AAAAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 15 0.62
17 1 0.04
18 8 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:16897345 original size:30 final size:30
Alignment explanation
Indices: 16897275--16897346 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
16897265 ATTCGATTCG
* * * *
16897275 AAATTAAT-AAAATATTATTTTTTAAATAT
1 AAATAAATAAAAATATAATTATATAAATAT
**
16897304 AAATATTTAAAAATATAATTATATAAATAT
1 AAATAAATAAAAATATAATTATATAAATAT
*
16897334 ATATAAATAAAAA
1 AAATAAATAAAAA
16897347 ATTAAAAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (30 bp):
AAATAAATAAAAATATAATTATATAAATAT
Found at i:16897358 original size:11 final size:12
Alignment explanation
Indices: 16897337--16897369 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
16897327 TAAATATATA
16897337 TAAATAAAAAAT
1 TAAATAAAAAAT
16897349 TAAA-AAAAAAT
1 TAAATAAAAAAT
*
16897360 TAATTAAAAA
1 TAAATAAAAA
16897370 TTTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAATAAAAAAT
Found at i:16899096 original size:24 final size:27
Alignment explanation
Indices: 16899069--16899126 Score: 77
Period size: 24 Copynumber: 2.3 Consensus size: 27
16899059 TAAATTAATA
*
16899069 ATAATATAATT-AAAATATC-AAA-AT
1 ATAATAAAATTAAAAATATCAAAACAT
*
16899093 ATAATAAAATTAAAAATCTCAAAACAT
1 ATAATAAAATTAAAAATATCAAAACAT
16899120 ATAATAA
1 ATAATAA
16899127 TATGTGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.34
25 7 0.24
26 3 0.10
27 9 0.31
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (27 bp):
ATAATAAAATTAAAAATATCAAAACAT
Found at i:16899096 original size:27 final size:30
Alignment explanation
Indices: 16899066--16899129 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 30
16899056 GTGTAAATTA
16899066 ATAATAATATAATT-AAAATATC-AAA-AT
1 ATAATAATATAATTAAAAATATCAAAACAT
*
16899093 ATAAT-A-A-AATTAAAAATCTCAAAACAT
1 ATAATAATATAATTAAAAATATCAAAACAT
16899120 ATAATAATAT
1 ATAATAATAT
16899130 GTGAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 4 0.13
27 12 0.40
28 1 0.03
29 1 0.03
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (30 bp):
ATAATAATATAATTAAAAATATCAAAACAT
Found at i:16900880 original size:24 final size:24
Alignment explanation
Indices: 16900844--16900889 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
16900834 ATTTAAGATA
**
16900844 AATTTTATTTATTTAAACAATAAT
1 AATTTTAAATATTTAAACAATAAT
*
16900868 AATTTTAAATATTTAAATAATA
1 AATTTTAAATATTTAAACAATA
16900890 TGTATGATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTTTAAATATTTAAACAATAAT
Found at i:16901062 original size:19 final size:20
Alignment explanation
Indices: 16901038--16901088 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
16901028 ACTAAAATGA
16901038 AATAATTTTAAAT-TT-AAG
1 AATAATTTTAAATATTAAAG
*
16901056 TAATAATATTAAATATTAAAG
1 -AATAATTTTAAATATTAAAG
*
16901077 AATTATTTTAAA
1 AATAATTTTAAA
16901089 ATTTTGTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 12 0.44
20 12 0.44
21 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (20 bp):
AATAATTTTAAATATTAAAG
Found at i:16901953 original size:3 final size:3
Alignment explanation
Indices: 16901947--16901976 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
16901937 ATAATTAATC
16901947 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16901977 ATTGGAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16901957 original size:24 final size:21
Alignment explanation
Indices: 16901899--16901976 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
16901889 ATCATTGATT
* *
16901899 TTAATTTTATTATTATAATAT
1 TTAATCTTATTATTATAATAA
* *
16901920 TTAATCTCACTATTATAATAA
1 TTAATCTTATTATTATAATAA
* *
16901941 TTAATCTTATTATTATTATTA
1 TTAATCTTATTATTATAATAA
* *
16901962 TTATTATTATTATTA
1 TTAATCTTATTATTA
16901977 ATTGGAGTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (21 bp):
TTAATCTTATTATTATAATAA
Found at i:16903067 original size:19 final size:17
Alignment explanation
Indices: 16903043--16903098 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 17
16903033 AATTAATAAT
16903043 AATATAATTAAAATATCAA
1 AATATAATTAAAAT-T-AA
16903062 AATATAA-TAAAATTAA
1 AATATAATTAAAATTAA
*
16903078 AATTTTAATTAAAAATTAA
1 AA-TATAATT-AAAATTAA
16903097 AA
1 AA
16903099 ATCTCAAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 17 0.52
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
AATATAATTAAAATTAA
Found at i:16905069 original size:30 final size:25
Alignment explanation
Indices: 16904999--16905067 Score: 111
Period size: 25 Copynumber: 2.7 Consensus size: 25
16904989 ATCAAATTGA
16904999 AATTTTATACGATTTGATTCGAATCG
1 AATTTTAT-CGATTTGATTCGAATCG
16905025 AATTTTATCGATTTGATTCGAATCG
1 AATTTTATCGATTTGATTCGAATCG
* *
16905050 AATTTTATCAATTCGATT
1 AATTTTATCGATTTGATT
16905068 TGGTTTAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (25 bp):
AATTTTATCGATTTGATTCGAATCG
Found at i:16911788 original size:16 final size:16
Alignment explanation
Indices: 16911758--16911798 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
16911748 ATATACATGT
*
16911758 AAATTAATA-ATAATA
1 AAATTAAAATATAATA
*
16911773 TAATTAAAATATAATA
1 AAATTAAAATATAATA
16911789 AAATTAAAAT
1 AAATTAAAAT
16911799 TTTAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTAAAATATAATA
Found at i:16911799 original size:22 final size:21
Alignment explanation
Indices: 16911758--16911799 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
16911748 ATATACATGT
*
16911758 AAATTAATAATAATATAATTA
1 AAATTAATAATAATAAAATTA
16911779 AAATATAATAA-AATTAAAATT
1 AAAT-TAATAATAA-TAAAATT
16911800 TTAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATTAATAATAATAAAATTA
Found at i:16912047 original size:24 final size:24
Alignment explanation
Indices: 16912019--16912064 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
16912009 TTTTAAGATA
**
16912019 AATTTTATTTATTTAAAAAATAAT
1 AATTTTAAATATTTAAAAAATAAT
*
16912043 AATTTTAAATATTTAAATAATA
1 AATTTTAAATATTTAAAAAATA
16912065 TGTATGATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTTTAAATATTTAAAAAATAAT
Found at i:16912231 original size:20 final size:20
Alignment explanation
Indices: 16912208--16912259 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
16912198 ACTAAAATGA
* *
16912208 AATAATTTTAAATTTTAAGT
1 AATAATTTTAAATATTAAAT
*
16912228 AATAATATTAAATATTAAAT
1 AATAATTTTAAATATTAAAT
*
16912248 AATTATTTTAAA
1 AATAATTTTAAA
16912260 AATTTGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
AATAATTTTAAATATTAAAT
Found at i:16912974 original size:18 final size:18
Alignment explanation
Indices: 16912937--16912979 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
16912927 AATAAATTAA
*
16912937 TAAAATTATAATTAATTT
1 TAAAATTATAAATAATTT
*
16912955 TATAATTATTAAATAA-TT
1 TAAAATTA-TAAATAATTT
16912973 TAAAATT
1 TAAAATT
16912980 TTTGTTAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATTATAAATAATTT
Found at i:16915868 original size:20 final size:21
Alignment explanation
Indices: 16915830--16915870 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
16915820 TATGTATTAT
* *
16915830 TTTAATATAATTTTTAATATA
1 TTTAATATAAATTTAAATATA
16915851 TTTAA-ATAAATTTAAATATA
1 TTTAATATAAATTTAAATATA
16915871 AAATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTAATATAAATTTAAATATA
Found at i:16935966 original size:14 final size:15
Alignment explanation
Indices: 16935947--16935976 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
16935937 GTAGTGGCAT
16935947 AAAAAAAAT-TAAAA
1 AAAAAAAATCTAAAA
16935961 AAAAAAAATCTAAAA
1 AAAAAAAATCTAAAA
16935976 A
1 A
16935977 TAGAGGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAAAATCTAAAA
Found at i:16942034 original size:19 final size:20
Alignment explanation
Indices: 16942010--16942050 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
16942000 GTATATATAT
*
16942010 TTAAATAATA-AAATTTTTA
1 TTAAATAATATAAATTATTA
16942029 TTAAATAATATAAATTATTA
1 TTAAATAATATAAATTATTA
16942049 TT
1 TT
16942051 TTAGATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAAATAATATAAATTATTA
Found at i:16944894 original size:19 final size:19
Alignment explanation
Indices: 16944853--16944895 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
16944843 AAACACACAT
* * *
16944853 ATATATATTTATACATTAT
1 ATATATATATATACATGAC
*
16944872 ATATATATATATATATGAC
1 ATATATATATATACATGAC
16944891 ATATA
1 ATATA
16944896 CAAACATACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (19 bp):
ATATATATATATACATGAC
Found at i:16954172 original size:27 final size:26
Alignment explanation
Indices: 16954142--16954194 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
16954132 ATTTATCATT
16954142 TAATTAT-TATATATAATGTATAATAAA
1 TAATTATGTA-ATATAATGTA-AATAAA
*
16954169 TAATTATGTAATATAATTTAAATAAA
1 TAATTATGTAATATAATGTAAATAAA
16954195 AATGATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
27 16 0.67
28 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (26 bp):
TAATTATGTAATATAATGTAAATAAA
Found at i:16954530 original size:19 final size:19
Alignment explanation
Indices: 16954495--16954533 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
16954485 ACCTAGTTTT
**
16954495 TTTTTTAATTATGTTTTAA
1 TTTTTTAATTAAATTTTAA
16954514 TTTTTTAATTAAATTTTAA
1 TTTTTTAATTAAATTTTAA
16954533 T
1 T
16954534 AGATAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTTTTAATTAAATTTTAA
Found at i:16954575 original size:31 final size:28
Alignment explanation
Indices: 16954540--16954610 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
16954530 TAATAGATAA
16954540 TAAAATATAAATAAATATAAGTATATTTTTTT
1 TAAAA-ATAAATAAATA-AA--ATATTTTTTT
* **
16954572 AAAAAATAAATATTTAAAATATTTTTTT
1 TAAAAATAAATAAATAAAATATTTTTTT
16954600 TAAAAATAAAT
1 TAAAAATAAAT
16954611 TAAAGGTAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 20 0.57
30 2 0.06
31 9 0.26
32 4 0.11
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (28 bp):
TAAAAATAAATAAATAAAATATTTTTTT
Found at i:16954579 original size:27 final size:27
Alignment explanation
Indices: 16954548--16954610 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
16954538 AATAAAATAT
*
16954548 AAATAAATA-TAAGTATATTTTTTTAAA
1 AAATAAATATTAA-AATATTTTTTTAAA
*
16954575 AAATAAATATTTAAAATATTTTTTTTAA
1 AAATAAATA-TTAAAATATTTTTTTAAA
16954603 AAATAAAT
1 AAATAAAT
16954611 TAAAGGTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 9 0.28
28 20 0.62
29 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (27 bp):
AAATAAATATTAAAATATTTTTTTAAA
Found at i:16954801 original size:24 final size:23
Alignment explanation
Indices: 16954765--16954819 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
16954755 AAATGAAGTT
* * *
16954765 AAAAAA-ATGAAAATTACATATA
1 AAAAAATATGAAAATAAAAAATA
16954787 AAAAAATATGAAAAATAAAAAATA
1 AAAAAATATG-AAAATAAAAAATA
16954811 AAAAAATAT
1 AAAAAATAT
16954820 TTGATAAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 6 0.21
23 3 0.11
24 19 0.68
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAAAATATGAAAATAAAAAATA
Found at i:16966681 original size:70 final size:69
Alignment explanation
Indices: 16966592--16966728 Score: 181
Period size: 71 Copynumber: 2.0 Consensus size: 69
16966582 CAAAAAAAAT
*
16966592 ATGTATGAAAAAAATTTTAGAATATCCATGAAAA-ATTT-TCTTC-AATTTTTCTTATTTTATAA
1 ATGTATGAAAAAAATTTTAG--TATCCA-GAAAATATTTCTCTTCAAATTTTTCTTATGTTATAA
16966654 TTTTGGG
63 TTTTGGG
* *
16966661 ATGTCTGAGAAAAAATTTTAGTATCCAGAAAATATTTCCTTTTCAAATTTTTCTTATGTTATAAT
1 ATGTATGA-AAAAAATTTTAGTATCCAGAAAATATTT-CTCTTCAAATTTTTCTTATGTTATAAT
16966726 TTT
64 TTT
16966729 TTAAAATATG
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
67 5 0.08
68 10 0.17
69 7 0.12
70 16 0.27
71 22 0.37
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (69 bp):
ATGTATGAAAAAAATTTTAGTATCCAGAAAATATTTCTCTTCAAATTTTTCTTATGTTATAATTT
TGGG
Found at i:16979190 original size:22 final size:21
Alignment explanation
Indices: 16979140--16979200 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
16979130 ATAAATCTAA
* *
16979140 TTAAATTAATAAA-ATTTAAT
1 TTAATTTAAAAAATATTTAAT
16979160 TTAATTTAAAAAATATTTAAT
1 TTAATTTAAAAAATATTTAAT
16979181 TTGAATTTAAAAAAT-TTTAA
1 TT-AATTTAAAAAATATTTAA
16979201 AATACTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 11 0.30
21 14 0.38
22 12 0.32
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TTAATTTAAAAAATATTTAAT
Found at i:16981732 original size:16 final size:15
Alignment explanation
Indices: 16981699--16981733 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16981689 GGTTTTTTCA
*
16981699 TTTTTCTTTCAATTT
1 TTTTTCTTTCAATGT
16981714 TTTTTCTTTCATATGT
1 TTTTTCTTTCA-ATGT
16981730 TTTT
1 TTTT
16981734 GATAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTTCTTTCAATGT
Found at i:16984648 original size:709 final size:710
Alignment explanation
Indices: 16983278--16984693 Score: 1725
Period size: 709 Copynumber: 2.0 Consensus size: 710
16983268 TAAAAAGTTT
* * * *
16983278 TCTTTGCCAAGCTAACATCTATTTGCGATTTCTTTAAGGTTTGATAAGTGTCTAAAGTCAATTTG
1 TCTTTGCCAAGCTAACATCTATTTGCAATTCCTCTAAGGTTTGATAAGTGTATAAAGTCAATTTG
* * *
16983343 TTAACTTTAATTGGTTAAATTTTATTGTATGATTCTTCTTAACTTAATTTGAGATGACAATATAT
66 TTAACTTTAATTGGTTAAATTTTATTATATGATTCTTCTTAACTCAATTTGAGATGACAAGATAT
* *
16983408 AGAATTCTAATTTCATAACTTTCAGGATAGTGGGACATGAATTTAATATGCTCAAGATAGATAAG
131 AGAATTCTAATTTCATAACTTTCACGATAGTAGGACATGAATTTAATATGCTCAAGATAGATAAG
* *
16983473 CTAAGACCACATATTATATTTCTTTTCTTTTGAATTAATGAGCAAAAAAGCTAAAAACGTGAGCA
196 CTAAGACCACATATCATATTTCTTTTCTTTTGAATTAATGAGCAAAAAAGCTAAAAACGTAAGCA
* * * * *
16983538 TTTTCTCTAGTGTAAAATGATAATTTAAGCATGATTTTTCACATTGTTTACAATAAAAGATTCTT
261 TTTTCTCAAATGTAAAATGACAACTTAAGCATGATTTTTCACATAGTTTACAATAAAAGATTCTT
* * * * *
16983603 ATTCTTTTAATTATCCTGTTGTTTGTACTAGTCTTTTTTGTTTCTGCTTAAAAGTAGTAGGTACA
326 ATGCTTTTAATTATCCTGTTGGTTGTACTAGTCTTTTTTATTTCTACTTAAAAGTAATAGGTACA
* * *
16983668 ACTATTTTGTTGTGCAGTGTGATTGTTCTTGCATGTTTAAATCAAGATGAAGTAAAGCATAGCTT
391 ACTATTTTGTTATGCAGTGTGACTGTTCTTCCATGTTTAAATCAAGATGAAGTAAAGCATAGCTT
* *
16983733 CGGACACACAAGAAGTGTGTTCAAGTTTTATGCAATAAACATAGGTGAGATTTTGCTTTGAATCA
456 CGGACACACAAGAAGTGTGTTCAAGTTTTATGCAATAAACAGAGGTGAGATTTTGCTTCGAATCA
*
16983798 AGGCATGGTATCGATAATGTCTCTCATATGTAATGTTTCCAAAATACTTTAAAGCTCTAGGAGTA
521 AGGCATGGTATCGATAATGTCTCTCATATGTAATGTTTCCAAAATACTTTAAAGCTCTAAGAGTA
* * * * * * *
16983863 TTTCTTTGTAAAAATTCTTAAATTTTGAGTTATTATCTACTAGTAACTAGTTTGATGGTGCTTAA
586 TTCCTTTGCAAAAATTCTTAAATTTTGAATTATTATCTACCAGTAACCAATTTGATGGTGATTAA
* * * *
16983928 ACTAGT-AAAAAAATAAAACCAATTGAACTTAGACAATATTTTAAAGCCAAATCACTTGA
651 ACTAGTAAAAAAAATAAAACCAATTGAACTCAAACAATATCTTAAAACCAAATCACTTGA
* ** *
16983987 TCTTTGCCAAGCTAACATCTATTTGCAATTCCTCT-AGGATTTGATATGTGTAT-GGGTTAATTT
1 TCTTTGCCAAGCTAACATCTATTTGCAATTCCTCTAAGG-TTTGATAAGTGTATAAAGTCAA-TT
* * * *
16984050 TGTTAAGTTTAATTGGTTAAATTTTATTATATGATTCTTTTTAACTCATTTTGAGGTGACAAGAT
64 TGTTAACTTTAATTGGTTAAATTTTATTATATGATTCTTCTTAACTCAATTTGAGATGACAAGAT
* * * * * * *
16984115 AT-GAAACTT-TACTTTTCA-AATTTTCACGATGGTAGGACATGAGTTTAATGTGCTCAAGGTGG
129 ATAG-AA-TTCTA-ATTTCATAACTTTCACGATAGTAGGACATGAATTTAATATGCTCAAGATAG
* * * * * *
16984177 ATAGGCTGAGAACCACGTATCATATTTCTTTTCCTTTT-AATTGATGAGC-ATAAAGTTAAAAAC
191 ATAAGCTAAG-ACCACATATCATATTTCTTTT-CTTTTGAATTAATGAGCAAAAAAGCTAAAAAC
* ** * *
16984240 TTAAGCATTTTCTCAAATGTGGAATGACAACTTAAGCATGATTTTTCTCATAGTTTGCAATAAAA
254 GTAAGCATTTTCTCAAATGTAAAATGACAACTTAAGCATGATTTTTCACATAGTTTACAATAAAA
* * * ***
16984305 GATTCTTATGCTTTTAATTATCTTGTTGGTTGTACTAG-CATTTTTTATTTTTATTTAGGGGTAA
319 GATTCTTATGCTTTTAATTATCCTGTTGGTTGTACTAGTC-TTTTTTATTTCTACTTAAAAGTAA
* ** * * * * * *
16984369 TAGGTGCAGTTGTTTTGTTATG-TGTTTGACTGTTTTTCCATGTTTAAATCAGGTTGAAGT-AAG
383 TAGGTACAACTATTTTGTTATGCAGTGTGACTGTTCTTCCATGTTTAAATCAAGATGAAGTAAAG
* * ** *
16984432 ACACT-GCTTCAAGTACATATGAGATA-T-T-TTTAAGTTTTATGCAATAAACAG-GAGTGAGAT
448 -CA-TAGCTTC--GGACACACAAGA-AGTGTGTTCAAGTTTTATGCAATAAACAGAG-GTGAGAT
* * *
16984492 TTTGCTTCGAATTAAGGCATGGTATTGATAATGTCTCTCATATGTAATGTTTTC-AAATCACTTT
507 TTTGCTTCGAATCAAGGCATGGTATCGATAATGTCTCTCATATGTAATGTTTCCAAAAT-ACTTT
* * *
16984556 AAAGCTTCTAAGAGTATTCCTTTGCAAAAGTTCTTGAATTTTGAATTGTTATCTACCAGTAACCA
571 AAAGC-TCTAAGAGTATTCCTTTGCAAAAATTCTTAAATTTTGAATTATTATCTACCAGTAACCA
* *
16984621 ATTTGATGGTGATTAAA-TTGATAAAAAAAATTAAACCAATTGAACTCAAACAATATCTTAAAAC
635 ATTTGATGGTGATTAAACTAG-TAAAAAAAATAAAACCAATTGAACTCAAACAATATCTTAAAAC
16984685 CAAATCACT
699 CAAATCACT
16984694 CAATGAAATT
Statistics
Matches: 597, Mismatches: 92, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
707 8 0.01
708 137 0.23
709 356 0.60
710 90 0.15
711 6 0.01
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (710 bp):
TCTTTGCCAAGCTAACATCTATTTGCAATTCCTCTAAGGTTTGATAAGTGTATAAAGTCAATTTG
TTAACTTTAATTGGTTAAATTTTATTATATGATTCTTCTTAACTCAATTTGAGATGACAAGATAT
AGAATTCTAATTTCATAACTTTCACGATAGTAGGACATGAATTTAATATGCTCAAGATAGATAAG
CTAAGACCACATATCATATTTCTTTTCTTTTGAATTAATGAGCAAAAAAGCTAAAAACGTAAGCA
TTTTCTCAAATGTAAAATGACAACTTAAGCATGATTTTTCACATAGTTTACAATAAAAGATTCTT
ATGCTTTTAATTATCCTGTTGGTTGTACTAGTCTTTTTTATTTCTACTTAAAAGTAATAGGTACA
ACTATTTTGTTATGCAGTGTGACTGTTCTTCCATGTTTAAATCAAGATGAAGTAAAGCATAGCTT
CGGACACACAAGAAGTGTGTTCAAGTTTTATGCAATAAACAGAGGTGAGATTTTGCTTCGAATCA
AGGCATGGTATCGATAATGTCTCTCATATGTAATGTTTCCAAAATACTTTAAAGCTCTAAGAGTA
TTCCTTTGCAAAAATTCTTAAATTTTGAATTATTATCTACCAGTAACCAATTTGATGGTGATTAA
ACTAGTAAAAAAAATAAAACCAATTGAACTCAAACAATATCTTAAAACCAAATCACTTGA
Found at i:16986872 original size:227 final size:227
Alignment explanation
Indices: 16986477--16986916 Score: 666
Period size: 227 Copynumber: 1.9 Consensus size: 227
16986467 ATATCCTTAA
* *
16986477 AAATTATATCAATAATTTAAATTGTATAAATTTTGAGTAAGGATAACGTTGACCAATAAATAAAT
1 AAATTATATCAATAATTTAAATTGTATAAATTTTAAGTAAAGATAACGTTGACCAATAAATAAAT
* * * * * *
16986542 TATCTTATTTTAATCTTTGGATGCATCAAATATAAGATAAGATGACATTATTTAATCTAATCCTA
66 TATCTTATCTTAATCATTAGATGCATAAAATATAAAATAAGATGACATTATTTAATCTAATCATA
* * * * *
16986607 TTCATAATATTATCTTATCTTATTTTATCATAATCTTATGTACCAAACACAT-TCTTAGTATATA
131 TTCATAACATCATCTTATCCTATGTTATCATAATCTTATATACCAAACACATCT-TTAGTATATA
*
16986671 TAGTATAAGTATAAATATATAGTTAAATAATTT
195 TAGTATAAGCATAAATATATAGTTAAATAATTT
**
16986704 AAATTATATCAATAATTTAAATTGTATAAATTTTAAGTAAAGATAATTTTGACCAATAAATAAAT
1 AAATTATATCAATAATTTAAATTGTATAAATTTTAAGTAAAGATAACGTTGACCAATAAATAAAT
* * *
16986769 TATTTTATCTTAATCATTATATGCATAAAATATAAAATAAGATGATATTATTTAATCTAATCATA
66 TATCTTATCTTAATCATTAGATGCATAAAATATAAAATAAGATGACATTATTTAATCTAATCATA
* * *
16986834 TTTATAACATCATTTTATCCTATGTTATCATAATCTTATATACTAAACACATCTTTAGTATATAT
131 TTCATAACATCATCTTATCCTATGTTATCATAATCTTATATACCAAACACATCTTTAGTATATAT
16986899 AGTATAAGCATAAATATA
196 AGTATAAGCATAAATATA
16986917 GATTTCTTCA
Statistics
Matches: 190, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
227 189 0.99
228 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (227 bp):
AAATTATATCAATAATTTAAATTGTATAAATTTTAAGTAAAGATAACGTTGACCAATAAATAAAT
TATCTTATCTTAATCATTAGATGCATAAAATATAAAATAAGATGACATTATTTAATCTAATCATA
TTCATAACATCATCTTATCCTATGTTATCATAATCTTATATACCAAACACATCTTTAGTATATAT
AGTATAAGCATAAATATATAGTTAAATAATTT
Found at i:16987896 original size:22 final size:22
Alignment explanation
Indices: 16987854--16987899 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
16987844 CTTAACAAGC
*
16987854 ATAATTAAAAATATTAAAAAAG
1 ATAATTAAAAATATAAAAAAAG
* *
16987876 ATAATTAAATATAAAAGAAAAAG
1 ATAATTAAAAATATAA-AAAAAG
16987899 A
1 A
16987900 AAAAGGCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (22 bp):
ATAATTAAAAATATAAAAAAAG
Found at i:16992461 original size:19 final size:18
Alignment explanation
Indices: 16992428--16992469 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
16992418 TATTGATCTG
16992428 AAAAAGAAAATTTAAAGGAA
1 AAAAAGAAAATTT-AA-GAA
16992448 AAAAAGAAAA-TTAAGAA
1 AAAAAGAAAATTTAAGAA
16992465 AAAAA
1 AAAAA
16992470 AAGATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 2 0.09
19 2 0.09
20 10 0.45
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAAGAAAATTTAAGAA
Found at i:16992469 original size:20 final size:20
Alignment explanation
Indices: 16992428--16992473 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
16992418 TATTGATCTG
**
16992428 AAAAAGAAAATTTAAAGGAA
1 AAAAAGAAAATTTAAAAAAA
*
16992448 AAAAAGAAAA-TTAAGAAAA
1 AAAAAGAAAATTTAAAAAAA
16992467 AAAAAGA
1 AAAAAGA
16992474 TATAAAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (20 bp):
AAAAAGAAAATTTAAAAAAA
Found at i:16992473 original size:19 final size:20
Alignment explanation
Indices: 16992428--16992470 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
16992418 TATTGATCTG
*
16992428 AAAAAGAAAATTTAAAGGAA
1 AAAAAGAAAATTTAAAGAAA
16992448 AAAAAGAAAA-TT-AAGAAA
1 AAAAAGAAAATTTAAAGAAA
16992466 AAAAA
1 AAAAA
16992471 AGATATAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 2 0.09
20 10 0.45
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (20 bp):
AAAAAGAAAATTTAAAGAAA
Found at i:16992716 original size:18 final size:19
Alignment explanation
Indices: 16992682--16992720 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
16992672 CTATAGAAAA
16992682 AAAAGGAAGACAAAAAATG
1 AAAAGGAAGACAAAAAATG
16992701 AAAAGGAAGA-AAAAAATG
1 AAAAGGAAGACAAAAAATG
16992719 AA
1 AA
16992721 GTGAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.05
Consensus pattern (19 bp):
AAAAGGAAGACAAAAAATG
Found at i:16993328 original size:34 final size:34
Alignment explanation
Indices: 16993290--16993386 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 34
16993280 TAAAAACCTG
*
16993290 TAAAAATTTTTAAATTTATAAATTTGAAATTTTT
1 TAAAAATTTTTAAATTTATAAATTTGAAAATTTT
* * **
16993324 TAAAAATTTATGAATTTATAAATTAAAAAATTTT
1 TAAAAATTTTTAAATTTATAAATTTGAAAATTTT
* * * * *
16993358 AAAAAATTGTCAAATTTATATATATGAAA
1 TAAAAATTTTTAAATTTATAAATTTGAAA
16993387 GGTTAAAAGT
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (34 bp):
TAAAAATTTTTAAATTTATAAATTTGAAAATTTT
Found at i:16994645 original size:21 final size:23
Alignment explanation
Indices: 16994603--16994659 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 23
16994593 GAATAAATTT
*
16994603 AAAATTATCTAATTTATAATTAA
1 AAAATTATCTTATTTATAATTAA
*
16994626 AAAATTATTTTATTT-T-ATTAA
1 AAAATTATCTTATTTATAATTAA
16994647 AAAATTATCTTAT
1 AAAATTATCTTAT
16994660 GTATTATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 17 0.55
22 1 0.03
23 13 0.42
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAATTATCTTATTTATAATTAA
Found at i:16994666 original size:23 final size:22
Alignment explanation
Indices: 16994603--16994667 Score: 78
Period size: 21 Copynumber: 2.9 Consensus size: 22
16994593 GAATAAATTT
* *
16994603 AAAATTATCTAATTTATAATTAA
1 AAAATTATCTTA-TTATTATTAA
*
16994626 AAAATTATTTTATT-TTATTAA
1 AAAATTATCTTATTATTATTAA
16994647 AAAATTATCTTATGTATTATT
1 AAAATTATCTTAT-TATTATT
16994668 TAAGAGAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 18 0.50
22 3 0.08
23 15 0.42
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.51
Consensus pattern (22 bp):
AAAATTATCTTATTATTATTAA
Found at i:16994762 original size:142 final size:144
Alignment explanation
Indices: 16994605--16994888 Score: 361
Period size: 143 Copynumber: 2.0 Consensus size: 144
16994595 ATAAATTTAA
*
16994605 AATTATCTAATTTATAATT-AAAAAATTATTTTATT-TTATTAAAAAATTAT-CT-TATGTATTA
1 AATTATCTAATTTATAATTAAAAAAATTATATTATTCTT-TTAAAAAATTATACTATATG--TTA
* * * * *
16994666 TTTAAGAGAATTGTTCACGTAAA-TTTTTATGTGAT-AAATTT-GTTTATGTATATTGTTATATA
63 TTTAAGAGAATT-ATCACATAAACATTTT-TGTG-TCAAATTTATTTTA-GTACATTGTTATATA
16994728 -ATATATAT-TAAATATATTT
124 TATATATATATAAATATATTT
*
16994747 AATTATTTAATTTATAATTAAAAAAATTATATTATTCTTTTAAAAAATTATACTATATGTTATTT
1 AATTATCTAATTTATAATTAAAAAAATTATATTATTCTTTTAAAAAATTATACTATATGTTATTT
*
16994812 AAGAGAATTATCACATAAACATTTTTGTGTCAAATTTATTTTAGTACGTTGTTATATATATATAT
66 AAGAGAATTATCACATAAACATTTTTGTGTCAAATTTATTTTAGTACATTGTTATATATATATAT
*
16994877 ATATATATATAT
131 ATATAAATATAT
16994889 ATATATATAT
Statistics
Matches: 124, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
141 1 0.01
142 49 0.40
143 58 0.47
144 12 0.10
145 4 0.03
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (144 bp):
AATTATCTAATTTATAATTAAAAAAATTATATTATTCTTTTAAAAAATTATACTATATGTTATTT
AAGAGAATTATCACATAAACATTTTTGTGTCAAATTTATTTTAGTACATTGTTATATATATATAT
ATATAAATATATTT
Found at i:16994871 original size:2 final size:2
Alignment explanation
Indices: 16994864--16994898 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16994854 AGTACGTTGT
16994864 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16994899 TTTAGATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:16997209 original size:16 final size:16
Alignment explanation
Indices: 16997188--16997219 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16997178 TTTTGTCTAG
16997188 CCCAATCACTGTTGAT
1 CCCAATCACTGTTGAT
*
16997204 CCCAATCAGTGTTGAT
1 CCCAATCACTGTTGAT
16997220 TGAACTTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (16 bp):
CCCAATCACTGTTGAT
Found at i:17004718 original size:203 final size:203
Alignment explanation
Indices: 17004369--17004745 Score: 745
Period size: 203 Copynumber: 1.9 Consensus size: 203
17004359 GAATTGTTTG
17004369 AATTATGCATTGTACTGATGCGTTATGCAAATTCTGGGGGTAGATGCGATTGTGGGCAATTGATT
1 AATTATGCATTGTACTGATGCGTTATGCAAATTCTGGGGGTAGATGCGATTGTGGGCAATTGATT
17004434 GGAGTGTATGGTGTTTAGGTTCCCAGCTCCCACCTTTGTGTTCCATCACTCTTCTCTACTTCTTT
66 GGAGTGTATGGTGTTTAGGTTCCCAGCTCCCACCTTTGTGTTCCATCACTCTTCTCTACTTCTTT
17004499 GATGATTGAAAGGGATGGAACCATGCATTTGGTGGCATTAACCAGGGAACCAAGTATTTGGTGGC
131 GATGATTGAAAGGGATGGAACCATGCATTTGGTGGCATTAACCAGGGAACCAAGTATTTGGTGGC
17004564 ATCAGTAC
196 ATCAGTAC
17004572 AATTATGCATTGTACTGATGCGTTATGCAAATTCTGGGGGTAGATGCGATTGTGGGCAATTGATT
1 AATTATGCATTGTACTGATGCGTTATGCAAATTCTGGGGGTAGATGCGATTGTGGGCAATTGATT
17004637 GGAGTGTATGGTGTTTAGGTTCCCAGCTCCCACCTTTGTGTTCCATCACTCTTCTCTACTTCTTT
66 GGAGTGTATGGTGTTTAGGTTCCCAGCTCCCACCTTTGTGTTCCATCACTCTTCTCTACTTCTTT
*
17004702 GATGATTGAAAGGGATGGAACTATGCATTTGGTGGCATTAACCA
131 GATGATTGAAAGGGATGGAACCATGCATTTGGTGGCATTAACCA
17004746 AGGATCTGTA
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 173 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (203 bp):
AATTATGCATTGTACTGATGCGTTATGCAAATTCTGGGGGTAGATGCGATTGTGGGCAATTGATT
GGAGTGTATGGTGTTTAGGTTCCCAGCTCCCACCTTTGTGTTCCATCACTCTTCTCTACTTCTTT
GATGATTGAAAGGGATGGAACCATGCATTTGGTGGCATTAACCAGGGAACCAAGTATTTGGTGGC
ATCAGTAC
Found at i:17011460 original size:16 final size:18
Alignment explanation
Indices: 17011425--17011459 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
17011415 AAGTAATTTA
17011425 AAAAAAAGTTCAATATAT
1 AAAAAAAGTTCAATATAT
17011443 AAAAAAAGTTCAATATA
1 AAAAAAAGTTCAATATA
17011460 ATATCATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAAAAAGTTCAATATAT
Found at i:17014373 original size:1 final size:1
Alignment explanation
Indices: 17014367--17014394 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
17014357 TAAGGTTAGA
17014367 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
17014395 AAATTTGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:17014548 original size:21 final size:22
Alignment explanation
Indices: 17014517--17014569 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
17014507 ATATATAATT
17014517 ATATATTTATA-TTTAAAAAATA
1 ATAT-TTTATATTTTAAAAAATA
*
17014539 ATTTTTTATATTTTAAAAAATA
1 ATATTTTATATTTTAAAAAATA
17014561 ATATTTTAT
1 ATATTTTAT
17014570 TAATTTCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATTTTATATTTTAAAAAATA
Found at i:17014810 original size:20 final size:20
Alignment explanation
Indices: 17014774--17014817 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
17014764 TATTTATATA
* *
17014774 TATTTAATAAATAAAATTTT
1 TATTAAATAAATAAAATTAT
17014794 TATTAAAT-AATATAAATTAT
1 TATTAAATAAATA-AAATTAT
17014814 TATT
1 TATT
17014818 TTAGATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTAAATAAATAAAATTAT
Found at i:17034264 original size:3 final size:3
Alignment explanation
Indices: 17034258--17034298 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
17034248 ATAATAATTA
17034258 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
17034299 GGTATTTCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:17040866 original size:92 final size:92
Alignment explanation
Indices: 17040659--17040864 Score: 297
Period size: 92 Copynumber: 2.2 Consensus size: 92
17040649 TATAAGACTT
* ** *
17040659 CTTAAATAATCTTCTTATATTTTAAGATTTAGGGTTTATGGTTGATATTTTTATAAAAGGATTAT
1 CTTAAATAATCTTTTTATATTTTAAGATTTAGAATTTATGGTTAATATTTTTATAAAAGGATTAT
* * * *
17040724 TTAAGACGTTTTTGTACAAAAAAATGT
66 TTAAGACATTTTTGGACAAAAAAACGC
* *
17040751 CTTAAATAATCATTTTATATTTTAAGATTTAGAATTTATGGTTAATATTTTTATAAAATGATTAT
1 CTTAAATAATCTTTTTATATTTTAAGATTTAGAATTTATGGTTAATATTTTTATAAAAGGATTAT
*
17040816 TTAAGACATTTTTGGAC-AGAAAACGC
66 TTAAGACATTTTTGGACAAAAAAACGC
*
17040842 CTTAAATAATTTTTTTATATTTT
1 CTTAAATAATCTTTTTATATTTT
17040865 TACAAATAGA
Statistics
Matches: 101, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
91 27 0.27
92 74 0.73
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (92 bp):
CTTAAATAATCTTTTTATATTTTAAGATTTAGAATTTATGGTTAATATTTTTATAAAAGGATTAT
TTAAGACATTTTTGGACAAAAAAACGC
Found at i:17041391 original size:147 final size:148
Alignment explanation
Indices: 17041095--17041384 Score: 501
Period size: 147 Copynumber: 2.0 Consensus size: 148
17041085 TAATTGAAAA
*
17041095 CACATTAAATAATTCGAATTTTTTTTTTATTGATGATATTTTATAAATAAAAATAGCAATCATAA
1 CACATTAAATAATTCGAATTATTTTTTTATTGATGATATTTTATAAATAAAAATAGCAATCATAA
* * * *
17041160 AAATATTTGTTTTCTTTTACTACTAAAGACATTATTTGTCATTTGAGTATTTATTATTAATAAAA
66 AAATATTTGTTTTCTTTTAATACTAAAGACATAATTTATCATTTAAGTATTTATTATTAATAAAA
*
17041225 GTTAATGAAAGTTACCAT
131 GCTAATGAAAGTTACCAT
*
17041243 CACATTAAATAATTTGAA-TATTTTTTTATTGATGATATTTTATAAATAAAAATAGCAATCATAA
1 CACATTAAATAATTCGAATTATTTTTTTATTGATGATATTTTATAAATAAAAATAGCAATCATAA
*
17041307 AAATATTTGTTTTCTTTTAATACTAAAGCCATAATTTATCATTTAAGTATTTATTATTAATAAAA
66 AAATATTTGTTTTCTTTTAATACTAAAGACATAATTTATCATTTAAGTATTTATTATTAATAAAA
17041372 GCTAATGAAAGTT
131 GCTAATGAAAGTT
17041385 GTCATCATAT
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
147 117 0.87
148 17 0.13
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (148 bp):
CACATTAAATAATTCGAATTATTTTTTTATTGATGATATTTTATAAATAAAAATAGCAATCATAA
AAATATTTGTTTTCTTTTAATACTAAAGACATAATTTATCATTTAAGTATTTATTATTAATAAAA
GCTAATGAAAGTTACCAT
Found at i:17042196 original size:2 final size:2
Alignment explanation
Indices: 17042185--17042213 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
17042175 TTTTATGAAC
17042185 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17042214 TGAGGGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:17043980 original size:34 final size:34
Alignment explanation
Indices: 17043911--17043981 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
17043901 AGAAATTAAA
* *
17043911 TTTCAAAAACATCCTCAATATACCAAAAATGCAT
1 TTTCAAAAACATCATCAATATACCAAAAATACAT
* * *
17043945 TTTCGAAAAACAT-ATCAATTTTCCAGAAATACAT
1 TTTC-AAAAACATCATCAATATACCAAAAATACAT
17043979 TTT
1 TTT
17043982 TGGAAGATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 23 0.74
35 8 0.26
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (34 bp):
TTTCAAAAACATCATCAATATACCAAAAATACAT
Found at i:17047589 original size:32 final size:32
Alignment explanation
Indices: 17047544--17047617 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
17047534 TTTTTATTCA
*
17047544 AAAT-ATTTCGGATTC-AAATATATTT-GAGTTT
1 AAATAATTTTGGATTCTAAATAT-TTTAGA-TTT
*
17047575 AAATAATTTTGGATTCTAACTATTTTAGATTT
1 AAATAATTTTGGATTCTAAATATTTTAGATTT
*
17047607 GAATAATTTTG
1 AAATAATTTTG
17047618 AATATGGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 4 0.11
32 26 0.70
33 7 0.19
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.47
Consensus pattern (32 bp):
AAATAATTTTGGATTCTAAATATTTTAGATTT
Found at i:17048521 original size:6 final size:6
Alignment explanation
Indices: 17048505--17048534 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
17048495 ATTATTCATG
*
17048505 CTCGAA TTCGAA CTCGAA CTCGAA CTCGAA
1 CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA
17048535 ATATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (6 bp):
CTCGAA
Found at i:17049089 original size:30 final size:30
Alignment explanation
Indices: 17049034--17049136 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 30
17049024 TCATTTTTTA
* * *
17049034 AAAATAAACTC-TATAATTTTA-TTATATT
1 AAAATAAACCCTTATACTTTGATTTATATT
* * *
17049062 TAAATAAACCCTTATGCTTTGATTTATATC
1 AAAATAAACCCTTATACTTTGATTTATATT
**
17049092 AAAATAAACTTTTATACTTTGATTTATATT
1 AAAATAAACCCTTATACTTTGATTTATATT
* *
17049122 CAAATAAATCCTTAT
1 AAAATAAACCCTTAT
17049137 TTTAAGTAAA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 9 0.16
29 7 0.12
30 42 0.72
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.45
Consensus pattern (30 bp):
AAAATAAACCCTTATACTTTGATTTATATT
Found at i:17051992 original size:16 final size:15
Alignment explanation
Indices: 17051955--17052023 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
17051945 AATTAAAATG
* *
17051955 AAATAATAATTATTT
1 AAATAAAAATTAATT
*
17051970 AATTAAAAATTTAATT
1 AAATAAAAA-TTAATT
*
17051986 AAAT-AAAA-TAAAT
1 AAATAAAAATTAATT
**
17051999 ATTTAAAAATTAATT
1 AAATAAAAATTAATT
*
17052014 AATTAAAAAT
1 AAATAAAAAT
17052024 AAATATTTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
13 6 0.14
14 4 0.10
15 24 0.57
16 8 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAATAAAAATTAATT
Found at i:17052009 original size:29 final size:29
Alignment explanation
Indices: 17051972--17052031 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
17051962 AATTATTTAA
17051972 TTAAAAATTTAATTAAAT-AAAATAAATAT
1 TTAAAAA-TTAATTAAATAAAAATAAATAT
*
17052001 TTAAAAATTAATTAATTAAAAATAAATAT
1 TTAAAAATTAATTAAATAAAAATAAATAT
17052030 TT
1 TT
17052032 GAATGCTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 9 0.31
29 20 0.69
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
TTAAAAATTAATTAAATAAAAATAAATAT
Found at i:17053586 original size:19 final size:19
Alignment explanation
Indices: 17053561--17053603 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
17053551 TAAGTATAAA
*
17053561 AATTT-AAAGATATCTTAT
1 AATTTAAAAGAAATCTTAT
17053579 ATATTTAAAAGAAATCTTAT
1 A-ATTTAAAAGAAATCTTAT
17053599 AATTT
1 AATTT
17053604 TTGGATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 8 0.36
20 13 0.59
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (19 bp):
AATTTAAAAGAAATCTTAT
Found at i:17056171 original size:23 final size:23
Alignment explanation
Indices: 17056145--17056191 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
17056135 GACCTTTTTG
17056145 TATT-TTT-CTTTTTAGTT-TTT
1 TATTATTTGCTTTTTAGTTATTT
*
17056165 TATTATTTGCTTTTTATTTATTT
1 TATTATTTGCTTTTTAGTTATTT
17056188 TATT
1 TATT
17056192 TTATTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 3 0.13
22 9 0.39
23 7 0.30
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (23 bp):
TATTATTTGCTTTTTAGTTATTT
Found at i:17056193 original size:14 final size:14
Alignment explanation
Indices: 17056176--17056212 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
17056166 ATTATTTGCT
17056176 TTTTATTTATT-TTA
1 TTTTATTT-TTATTA
17056190 TTTTATTTTTATTA
1 TTTTATTTTTATTA
17056204 -TTTATTTTT
1 TTTTATTTTT
17056213 GAAATATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:17058213 original size:6 final size:7
Alignment explanation
Indices: 17058193--17058218 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
17058183 GTTATTAGAA
17058193 TAATTTT
1 TAATTTT
17058200 TAATTTT
1 TAATTTT
17058207 TAATTTT
1 TAATTTT
17058214 TAATT
1 TAATT
17058219 AAAGATTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TAATTTT
Found at i:17060735 original size:99 final size:100
Alignment explanation
Indices: 17060603--17060801 Score: 346
Period size: 99 Copynumber: 2.0 Consensus size: 100
17060593 TTGTGGGCAC
* * *
17060603 CCTATTTAGTCTAGGGTCTACGTCAATTGGATCCAATTTAATTTTAGGCCCAAAAGATCTTATTT
1 CCTATTTACTCTAGGGTCTAAGTCAATTAGATCCAATTTAATTTTAGGCCCAAAAGATCTTATTT
*
17060668 TATATTTGATCTCATTTT-TTTTATTATTTATCTT
66 TATATTTCATCTCATTTTCTTTTATTATTTATCTT
*
17060702 CCTATTTACTCTAGGGTCTAAGTTAATTAGATCCAATTTAATTTTAGGCCCAAAAGATCTTATTT
1 CCTATTTACTCTAGGGTCTAAGTCAATTAGATCCAATTTAATTTTAGGCCCAAAAGATCTTATTT
17060767 TATATTTCATCTCATTTTCTTTTATTATTTATCTT
66 TATATTTCATCTCATTTTCTTTTATTATTTATCTT
17060802 TATATTTGTA
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 78 0.83
100 16 0.17
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.49
Consensus pattern (100 bp):
CCTATTTACTCTAGGGTCTAAGTCAATTAGATCCAATTTAATTTTAGGCCCAAAAGATCTTATTT
TATATTTCATCTCATTTTCTTTTATTATTTATCTT
Found at i:17060831 original size:12 final size:12
Alignment explanation
Indices: 17060792--17060876 Score: 58
Period size: 12 Copynumber: 7.6 Consensus size: 12
17060782 TTTCTTTTAT
*
17060792 TATTTATCTTTA
1 TATTTATCATTA
* *
17060804 TATTTGTAAATT-
1 TATTTAT-CATTA
*
17060816 TATTTATCAATA
1 TATTTATCATTA
17060828 TA-TTAT-ATTA
1 TATTTATCATTA
17060838 TA-TTAT-ATTA
1 TATTTATCATTA
* *
17060848 TATTTATCTTTG
1 TATTTATCATTA
17060860 TATTTATC-TT-
1 TATTTATCATTA
17060870 TATTTAT
1 TATTTAT
17060877 TTTATTTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
10 22 0.37
11 12 0.20
12 24 0.40
13 2 0.03
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (12 bp):
TATTTATCATTA
Found at i:17060836 original size:5 final size:5
Alignment explanation
Indices: 17060826--17060851 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
17060816 TATTTATCAA
17060826 TATAT TATAT TATAT TATAT TATAT T
1 TATAT TATAT TATAT TATAT TATAT T
17060852 TATCTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:17060873 original size:27 final size:26
Alignment explanation
Indices: 17060843--17060901 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
17060833 TATTATATTA
*
17060843 TATTATATTTATCTTTGTATTTA-TCTT
1 TATT-TATTTAT-TTTATATTTATTCTT
*
17060870 TATTTATTTTATTTTATCTTTATTCTT
1 TATTTA-TTTATTTTATATTTATTCTT
17060897 TATTT
1 TATTT
17060902 TATTCATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (26 bp):
TATTTATTTATTTTATATTTATTCTT
Found at i:17060882 original size:5 final size:5
Alignment explanation
Indices: 17060830--17060961 Score: 54
Period size: 5 Copynumber: 24.0 Consensus size: 5
17060820 TATCAATATA
* * * *
17060830 TTATA TTATA TTATA TTATAT TTATCT TTGTAT TTATCT TTA-T TTATT
1 TTATT TTATT TTATT TTAT-T TTAT-T TTAT-T TTAT-T TTATT TTATT
*
17060878 TTATT TTATCT TTATTCT TTATT TTATT CATTCA-T TTATCT TTATT TATCTT
1 TTATT TTAT-T TTA-T-T TTATT TTATT --TT-ATT TTAT-T TTATT T-TATT
*
17060930 TTTTT TTATT CTTA-T TTATCGT TTATT TTATT
1 TTATT TTATT -TTATT TTAT--T TTATT TTATT
17060962 ATTGTTTATC
Statistics
Matches: 104, Mismatches: 9, Indels: 28
0.74 0.06 0.20
Matches are distributed among these distances:
4 8 0.08
5 48 0.46
6 33 0.32
7 14 0.13
8 1 0.01
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.70
Consensus pattern (5 bp):
TTATT
Found at i:17060902 original size:23 final size:23
Alignment explanation
Indices: 17060872--17060946 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
17060862 TTTATCTTTA
17060872 TTTATTTTATTTTATCTTTATTC
1 TTTATTTTATTTTATCTTTATTC
*
17060895 TTTATTTTA-TTCATTCATTTA-TC
1 TTTATTTTATTTTA-TC-TTTATTC
* *
17060918 TTTA-TTTATCTTTTTTTTTATTC
1 TTTATTTTAT-TTTATCTTTATTC
17060941 -TTATTT
1 TTTATTT
17060947 ATCGTTTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
22 14 0.33
23 22 0.52
24 6 0.14
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTTATTTTATCTTTATTC
Found at i:17060925 original size:27 final size:29
Alignment explanation
Indices: 17060849--17060930 Score: 78
Period size: 32 Copynumber: 2.7 Consensus size: 29
17060839 ATTATATTAT
* *
17060849 ATTTATCTTTGTATTTATCTTTATTTATTTT
1 ATTTATC-TT-TATTTATCTTTATTCATTTC
17060880 ATTTTATCTTTATTCTTTAT-TTTATTCA-TTC
1 A-TTTATCTTTA---TTTATCTTTATTCATTTC
17060911 ATTTATCTTTATTTATCTTT
1 ATTTATCTTTATTTATCTTT
17060931 TTTTTTATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
27 5 0.11
28 3 0.07
30 12 0.27
31 6 0.14
32 13 0.30
33 5 0.11
ACGTcount: A:0.20, C:0.10, G:0.01, T:0.70
Consensus pattern (29 bp):
ATTTATCTTTATTTATCTTTATTCATTTC
Found at i:17060944 original size:22 final size:22
Alignment explanation
Indices: 17060919--17060972 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
17060909 TCATTTATCT
* *
17060919 TTATTTATCTTTTTTTTTATTC
1 TTATTTATCTTTTATTTTATTA
*
17060941 TTATTTATCGTTTATTTTATTA
1 TTATTTATCTTTTATTTTATTA
*
17060963 TTGTTTATCT
1 TTATTTATCT
17060973 AAAAAAAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.17, C:0.07, G:0.04, T:0.72
Consensus pattern (22 bp):
TTATTTATCTTTTATTTTATTA
Found at i:17060968 original size:15 final size:17
Alignment explanation
Indices: 17060934--17060970 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
17060924 TATCTTTTTT
17060934 TTTATTCTTATTTATCG
1 TTTATTCTTATTTATCG
*
17060951 TTTATT-TTA-TTATTG
1 TTTATTCTTATTTATCG
17060966 TTTAT
1 TTTAT
17060971 CTAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 3 0.16
17 6 0.32
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.70
Consensus pattern (17 bp):
TTTATTCTTATTTATCG
Found at i:17064416 original size:40 final size:41
Alignment explanation
Indices: 17064312--17064486 Score: 167
Period size: 40 Copynumber: 4.3 Consensus size: 41
17064302 TTTTATCTAT
* * * *
17064312 AGGTTTTTGAAAATCATTTAAAAATATGAGGTTTTGCTCAA
1 AGGTCTTTGGAAATCATTAAAAAATATGAGGTTTTACTCAA
* * * *
17064353 AGGTCTTTGGAAATTATTTAAAAATTTGAGGTTTTAC-CGA
1 AGGTCTTTGGAAATCATTAAAAAATATGAGGTTTTACTCAA
* * * *
17064393 GGGTCTTTGGAAATCATTAAAAAATATAAGATTTTACTTAA
1 AGGTCTTTGGAAATCATTAAAAAATATGAGGTTTTACTCAA
* * * * *
17064434 AGAT-TTTGGAAATCATTAAAAAATGTAAGATTTTACCCAA
1 AGGTCTTTGGAAATCATTAAAAAATATGAGGTTTTACTCAA
*
17064474 AAGT-TTTGGAAAT
1 AGGTCTTTGGAAAT
17064487 GATGTACTCA
Statistics
Matches: 112, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
40 77 0.69
41 35 0.31
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (41 bp):
AGGTCTTTGGAAATCATTAAAAAATATGAGGTTTTACTCAA
Found at i:17064468 original size:80 final size:81
Alignment explanation
Indices: 17064317--17064470 Score: 193
Period size: 81 Copynumber: 1.9 Consensus size: 81
17064307 TCTATAGGTT
* * * * * * * * *
17064317 TTTGAAAATCATTTAAAAATATGAGGTTTTGCTCAAAGGTCTTTGGAAATTATTTAAAAATTTGA
1 TTTGAAAATCATTAAAAAATATAAGATTTTACTCAAAGATCTTTGGAAATCATTAAAAAATGTAA
*
17064382 GGTTTTACCGAGGGTC
66 GATTTTACCGAGGGTC
* *
17064398 TTTGGAAATCATTAAAAAATATAAGATTTTACTTAAAGAT-TTTGGAAATCATTAAAAAATGTAA
1 TTTGAAAATCATTAAAAAATATAAGATTTTACTCAAAGATCTTTGGAAATCATTAAAAAATGTAA
17064462 GATTTTACC
66 GATTTTACC
17064471 CAAAAGTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
80 28 0.46
81 33 0.54
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.38
Consensus pattern (81 bp):
TTTGAAAATCATTAAAAAATATAAGATTTTACTCAAAGATCTTTGGAAATCATTAAAAAATGTAA
GATTTTACCGAGGGTC
Found at i:17064590 original size:23 final size:23
Alignment explanation
Indices: 17064540--17064590 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
17064530 ATCTTTTCAC
*
17064540 TTCAAAA--TTTTCACTTTTTAT
1 TTCAAAAGTTTTTCACTCTTTAT
*
17064561 TTCAAAAGTTTTTCACTCTTTGT
1 TTCAAAAGTTTTTCACTCTTTAT
*
17064584 TTTAAAA
1 TTCAAAA
17064591 TATCTTATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.28
23 18 0.72
ACGTcount: A:0.29, C:0.14, G:0.04, T:0.53
Consensus pattern (23 bp):
TTCAAAAGTTTTTCACTCTTTAT
Found at i:17064830 original size:17 final size:18
Alignment explanation
Indices: 17064808--17064842 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
17064798 CATACAACTT
17064808 TTTTTTCA-ATGCAAATA
1 TTTTTTCAGATGCAAATA
17064825 TTTTTTCATGATGCAAAT
1 TTTTTTCA-GATGCAAAT
17064843 GATCCATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (18 bp):
TTTTTTCAGATGCAAATA
Found at i:17067651 original size:5 final size:5
Alignment explanation
Indices: 17067623--17067697 Score: 50
Period size: 5 Copynumber: 14.6 Consensus size: 5
17067613 TCAACAAAAC
* *
17067623 AAATA ATAATA AAAT- CAGTA AAATA AAATA AAACTTAA AATATA AAATA
1 AAATA A-AATA AAATA AAATA AAATA AAATA AAA--T-A AA-ATA AAATA
17067672 ACAA-A AAATA AAAT- AAA-A AAATA AAA
1 A-AATA AAATA AAATA AAATA AAATA AAA
17067698 AGAAAATGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
4 10 0.18
5 30 0.54
6 10 0.18
7 2 0.04
8 3 0.05
9 1 0.02
ACGTcount: A:0.75, C:0.04, G:0.01, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:17067661 original size:17 final size:17
Alignment explanation
Indices: 17067623--17067689 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
17067613 TCAACAAAAC
17067623 AAATAATAATAAAATCAGTA
1 AAATAA-AATAAAA-CA-TA
*
17067643 AAATAAAATAAAACTTA
1 AAATAAAATAAAACATA
* *
17067660 AAATATAAA-ATAACAAA
1 AAATA-AAATAAAACATA
17067677 AAATAAAATAAAA
1 AAATAAAATAAAA
17067690 AAATAAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 3 0.08
17 20 0.50
18 4 0.10
19 7 0.17
20 6 0.15
ACGTcount: A:0.73, C:0.04, G:0.01, T:0.21
Consensus pattern (17 bp):
AAATAAAATAAAACATA
Found at i:17067703 original size:13 final size:13
Alignment explanation
Indices: 17067647--17067697 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
17067637 TCAGTAAAAT
*
17067647 AAAATAAAACTTAA
1 AAAATAAAA-TAAA
*
17067661 AATATAAAATAACAA
1 AAAATAAAAT-A-AA
17067676 AAAATAAAATAAA
1 AAAATAAAATAAA
17067689 AAAATAAAA
1 AAAATAAAA
17067698 AGAAAATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 12 0.38
14 9 0.28
15 11 0.34
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:17067703 original size:19 final size:20
Alignment explanation
Indices: 17067675--17067712 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
17067665 TAAAATAACA
*
17067675 AAAAATAAAAT-AAAAAAAT
1 AAAAAGAAAATGAAAAAAAT
17067694 AAAAAGAAAATGAAAAAAA
1 AAAAAGAAAATGAAAAAAA
17067713 AACCTGCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (20 bp):
AAAAAGAAAATGAAAAAAAT
Found at i:17067704 original size:34 final size:35
Alignment explanation
Indices: 17067642--17067714 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
17067632 TAAAATCAGT
** * *
17067642 AAAATAAAATAAAACTTAAAATATAAAAT-AACAA
1 AAAATAAAATAAAAAATAAAATAGAAAATGAAAAA
17067676 AAAATAAAATAAAAAAATAAAA-AGAAAATGAAAAA
1 AAAATAAAAT-AAAAAATAAAATAGAAAATGAAAAA
17067711 AAAA
1 AAAA
17067715 CCTGCGATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 16 0.48
35 17 0.52
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (35 bp):
AAAATAAAATAAAAAATAAAATAGAAAATGAAAAA
Found at i:17068482 original size:51 final size:51
Alignment explanation
Indices: 17068399--17068521 Score: 138
Period size: 51 Copynumber: 2.4 Consensus size: 51
17068389 TAATGCCAAT
** * * ** *
17068399 ATCTCTCCCCATCATTTTTAATGCCAATTGATTCTGGAATTAAATTTAAAAG
1 ATCTCTCAACATCA-TTTTAATGCCAATTGATTATGCAATTAAATCCAAAAA
**
17068451 ATCTCTCAACATCATTTTAATGTGAATTGATTATGCAATTAAATCCAAAAA
1 ATCTCTCAACATCATTTTAATGCCAATTGATTATGCAATTAAATCCAAAAA
* *
17068502 ATCTTTTAACATCATTTTAA
1 ATCTCTCAACATCATTTTAA
17068522 GCAGATTTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
51 48 0.80
52 12 0.20
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTCAACATCATTTTAATGCCAATTGATTATGCAATTAAATCCAAAAA
Found at i:17069361 original size:85 final size:85
Alignment explanation
Indices: 17069268--17069424 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
17069258 TTTATGATAA
* *
17069268 ATTCGT-AAAGATTCAAGATTCGCAAAG-GTATTCAGATT-CACAAAGTGGAAGATTCACAAGAT
1 ATTCGTAAAAGATTC-AGATTCGCAAAGACT-TTCAGATTCCACAAA-TGAAAGATTCACAAGAT
17069330 TTCAAGTTTCACAAAAATTTTAG
63 TTCAAGTTTCACAAAAATTTTAG
* * *
17069353 ATTCGTAAAAGTTTCAGGTTCGCAAAGACTTTCAGATTCGCACGAATGAAAGATTCACAAGATTT
1 ATTCGTAAAAGATTCAGATTCGCAAAGACTTTCAGATTC-CACAAATGAAAGATTCACAAGATTT
*
17069418 TAAGTTT
65 CAAGTTT
17069425 AGCAGAGGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 25 0.40
86 32 0.52
87 5 0.08
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (85 bp):
ATTCGTAAAAGATTCAGATTCGCAAAGACTTTCAGATTCCACAAATGAAAGATTCACAAGATTTC
AAGTTTCACAAAAATTTTAG
Found at i:17069440 original size:86 final size:85
Alignment explanation
Indices: 17069316--17069569 Score: 249
Period size: 86 Copynumber: 3.0 Consensus size: 85
17069306 CACAAAGTGG
* * ** * * * *
17069316 AAGATTCACAAGATTTCAAGTTTCA-CAAAAATTTTAGATTCGTAAAAGTTTCAGGTTCGCAAAG
1 AAGATTCACAAGATTTTAAGTTT-AGCAGAGGTTCTAGATTCATAAAAGTTTCAGGTTCGTAAGG
*
17069380 ACTTTCAGATTCGCACGAATGA
65 ACTTTCA-ATTCGCAAGAATGA
* *
17069402 AAGATTCACAAGATTTTAAGTTTAGCAGAGGTTCTAGATTCATAAAAATTTTAGGTTCGTAAGGA
1 AAGATTCACAAGATTTTAAGTTTAGCAGAGGTTCTAGATTCATAAAAGTTTCAGGTTCGTAAGGA
* *
17069467 CTTTTAAGTTCACAAGAATGA
66 CTTTCAA-TTCGCAAGAATGA
* * * * * * * * * *
17069488 AATATTCATAAAATTTTCAGTTTTGCAGAGGTTCGAGATTCACAAAGGTTTCAAGTTCATAAGGA
1 AAGATTCACAAGATTTTAAGTTTAGCAGAGGTTCTAGATTCATAAAAGTTTCAGGTTCGTAAGGA
*
17069553 CTTTCAAATTCGTAAGA
66 CTTTC-AATTCGCAAGA
17069570 TTTCAAGTTT
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
85 2 0.01
86 133 0.97
87 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (85 bp):
AAGATTCACAAGATTTTAAGTTTAGCAGAGGTTCTAGATTCATAAAAGTTTCAGGTTCGTAAGGA
CTTTCAATTCGCAAGAATGA
Found at i:17069559 original size:18 final size:16
Alignment explanation
Indices: 17069536--17069578 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
17069526 TTCACAAAGG
17069536 TTTCAAGTTCATAAGGA
1 TTTCAAGTTCATAA-GA
* *
17069553 CTTTCAAATTCGTAAGA
1 -TTTCAAGTTCATAAGA
17069570 TTTCAAGTT
1 TTTCAAGTT
17069579 TTGTAACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 8 0.36
17 2 0.09
18 12 0.55
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (16 bp):
TTTCAAGTTCATAAGA
Found at i:17071028 original size:16 final size:16
Alignment explanation
Indices: 17070994--17071026 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
17070984 GTCCTAACAA
17070994 TTTCTCTTTCATTTTT
1 TTTCTCTTTCATTTTT
17071010 TTTCTCTTT--TTTTT
1 TTTCTCTTTCATTTTT
17071024 TTT
1 TTT
17071027 TTTTTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
16 9 0.53
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTCTTTCATTTTT
Found at i:17074727 original size:20 final size:18
Alignment explanation
Indices: 17074702--17074794 Score: 82
Period size: 20 Copynumber: 4.8 Consensus size: 18
17074692 TCAACAAAAT
17074702 AAATAATAATAAAAT-TAGTA
1 AAATAA-AATAAAATCTA--A
17074722 AAATAAAATAAATATCTAA
1 AAATAAAATAAA-ATCTAA
17074741 AAATAAAAATAAAAAT-TAA
1 AAAT-AAAAT-AAAATCTAA
*
17074760 AATATAAAATATAAAATCAAA
1 AA-AT-AAA-ATAAAATCTAA
17074781 AAATAAAATAAAAT
1 AAATAAAATAAAAT
17074795 GAAAAAAAAA
Statistics
Matches: 65, Mismatches: 1, Indels: 16
0.79 0.01 0.20
Matches are distributed among these distances:
18 7 0.11
19 19 0.29
20 28 0.43
21 11 0.17
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (18 bp):
AAATAAAATAAAATCTAA
Found at i:17074743 original size:14 final size:13
Alignment explanation
Indices: 17074726--17074790 Score: 71
Period size: 14 Copynumber: 4.8 Consensus size: 13
17074716 TTAGTAAAAT
*
17074726 AAAATAAATATCTA
1 AAAATAAA-ATATA
17074740 AAAATAAAA-ATA
1 AAAATAAAATATA
17074752 AAAATTAAAATATA
1 AAAA-TAAAATATA
17074766 AAATATAAAATCA-A
1 AAA-ATAAAAT-ATA
17074780 AAAATAAAATA
1 AAAATAAAATA
17074791 AAATGAAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
12 7 0.15
13 13 0.28
14 24 0.52
15 2 0.04
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAAAATATA
Found at i:17074745 original size:39 final size:38
Alignment explanation
Indices: 17074702--17074799 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 38
17074692 TCAACAAAAT
* *
17074702 AAATAATAATAAAATTAGTAAA-ATAAAATA-AATATCTAA
1 AAATAA-AATAAAATTA--AAATATAAAATATAAAATCAAA
17074741 AAATAAAAATAAAAATTAAAATATAAAATATAAAATCAAA
1 AAAT-AAAAT-AAAATTAAAATATAAAATATAAAATCAAA
*
17074781 AAATAAAATAAAATGAAAA
1 AAATAAAATAAAATTAAAA
17074800 AAAAACCTAC
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
38 12 0.23
39 20 0.38
40 20 0.38
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (38 bp):
AAATAAAATAAAATTAAAATATAAAATATAAAATCAAA
Found at i:17075554 original size:51 final size:51
Alignment explanation
Indices: 17075437--17075583 Score: 168
Period size: 51 Copynumber: 2.9 Consensus size: 51
17075427 TTATTTGATA
* * * ** *
17075437 TAATTTTGAAATTAAATTCCAAAAATCTCTCCCCATCATTTTTAATGCCACT
1 TAATTCTGAAATTAAATCCCAAAAATTTCTCAACACCA-TTTTAATGCCACT
* * *
17075489 TGATTCTGAAATTAAATCCCAAAAATTTTTCAACGCCATTTTAATGCCACT
1 TAATTCTGAAATTAAATCCCAAAAATTTCTCAACACCATTTTAATGCCACT
** * *
17075540 TAATTCTGGGATTAAATCTCAAAAATTTCTCAACATCATTTTAA
1 TAATTCTGAAATTAAATCCCAAAAATTTCTCAACACCATTTTAA
17075584 CCAGATTTCA
Statistics
Matches: 79, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
51 50 0.63
52 29 0.37
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.37
Consensus pattern (51 bp):
TAATTCTGAAATTAAATCCCAAAAATTTCTCAACACCATTTTAATGCCACT
Found at i:17078388 original size:33 final size:31
Alignment explanation
Indices: 17078351--17078424 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
17078341 ATTTTGGAAC
* *
17078351 ATAAAAAAAT-ACTTAAAAAATAATAATGAAAAG
1 ATAAAAAAATAAATTAAAAAA-AA-AAT-AAAAA
* *
17078384 ATAAAAAAGTAAATTAAAAGAAAAATAAAAA
1 ATAAAAAAATAAATTAAAAAAAAAATAAAAA
17078415 ATAAAAAAAT
1 ATAAAAAAAT
17078425 GATTGAACTG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 13 0.37
32 3 0.09
33 11 0.31
34 8 0.23
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.19
Consensus pattern (31 bp):
ATAAAAAAATAAATTAAAAAAAAAATAAAAA
Found at i:17078422 original size:20 final size:21
Alignment explanation
Indices: 17078364--17078422 Score: 57
Period size: 24 Copynumber: 2.7 Consensus size: 21
17078354 AAAAAATACT
* *
17078364 TAAAAAATAATAATGAAAAGA
1 TAAAAAATAAAAAAGAAAAGA
17078385 TAAAAAAGTAAATTAAAAGAAAA-A
1 TAAAAAA-T-AA--AAAAGAAAAGA
17078409 TAAAAAATAAAAAA
1 TAAAAAATAAAAAA
17078423 ATGATTGAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 4 0.12
21 7 0.22
22 3 0.09
23 3 0.09
24 8 0.25
25 7 0.22
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (21 bp):
TAAAAAATAAAAAAGAAAAGA
Found at i:17080264 original size:20 final size:20
Alignment explanation
Indices: 17080223--17080262 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
17080213 CCAAAGTTAT
*
17080223 ACACAAAAAACAATGGAGAA
1 ACACAAAAAACAATAGAGAA
*
17080243 ACACATAAAA-AATAGAGAA
1 ACACAAAAAACAATAGAGAA
17080262 A
1 A
17080263 ACCAAAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.68, C:0.12, G:0.12, T:0.07
Consensus pattern (20 bp):
ACACAAAAAACAATAGAGAA
Found at i:17083152 original size:16 final size:17
Alignment explanation
Indices: 17083131--17083164 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
17083121 GAACTCATGC
17083131 AAAAAAAAAAGAT-AAA
1 AAAAAAAAAAGATGAAA
17083147 AAAAAAAAAAGATGAAA
1 AAAAAAAAAAGATGAAA
17083164 A
1 A
17083165 GGCATGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (17 bp):
AAAAAAAAAAGATGAAA
Found at i:17085082 original size:169 final size:168
Alignment explanation
Indices: 17084760--17085088 Score: 409
Period size: 169 Copynumber: 2.0 Consensus size: 168
17084750 AAAACATTCA
* *
17084760 GGCATGATTTTTTTAAACCTCAGGGTATCTTTCTAAATTTTAAAATTGTGAAGCCTTCCTATGGA
1 GGCATGATTTTTTAAAACCTCAGGGTATCTTTCTAAATTTTAAAATTATGAAGCCTTCCTATGGA
* * *
17084825 ATGAGCTTTTTCAAAATTTGATTTTTAATGTCTTTGGACATAGTCACCAAGTCCTTCGAGCACAA
66 ATGAGCTTTTTCAAAATTCGATTTATAATGTCTTTGGACATAATCACCAAGTCCTTCGAGCACAA
** * *
17084890 TCTATAAAATTTTCAAGCATTATCTTTTAAGTCTTCCG
131 TCTATAAAACCTCCAAACATTATCTTTTAAGTCTTCCG
* * * *
17084928 GGCATGATATTTTTAAAACCTTCA-GGTATTTTTCTAAATTTTAAAGTTATGGAGCTTTCCTATG
1 GGCATGAT-TTTTTAAAACC-TCAGGGTATCTTTCTAAATTTTAAAATTATGAAGCCTTCCTATG
*
17084992 GAATGAGCTTTTTCAAAATTCGATTTATAA-GAT-TTCT-GAGCATAATCACCAAGTCTTTCG-G
64 GAATGAGCTTTTTCAAAATTCGATTTATAATG-TCTT-TGGA-CATAATCACCAAGTCCTTCGAG
* *
17085053 -ACATATTTTATAAGACCTCCAAACATTATCTTTTAA
126 CACA-A-TCTATAAAACCTCCAAACATTATCTTTTAA
17085089 ATCCTTTGGG
Statistics
Matches: 138, Mismatches: 16, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
167 3 0.02
168 15 0.11
169 117 0.85
170 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (168 bp):
GGCATGATTTTTTAAAACCTCAGGGTATCTTTCTAAATTTTAAAATTATGAAGCCTTCCTATGGA
ATGAGCTTTTTCAAAATTCGATTTATAATGTCTTTGGACATAATCACCAAGTCCTTCGAGCACAA
TCTATAAAACCTCCAAACATTATCTTTTAAGTCTTCCG
Done.