Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 81 of 84
Found at i:17528081 original size:17 final size:17
Alignment explanation
Indices: 17528059--17528091 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
17528049 ATCTTTAAAA
17528059 AAAATCTTATGAATTTG
1 AAAATCTTATGAATTTG
17528076 AAAATCTTATGAATTT
1 AAAATCTTATGAATTT
17528092 TTTAGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (17 bp):
AAAATCTTATGAATTTG
Found at i:17528496 original size:3 final size:3
Alignment explanation
Indices: 17528488--17528532 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
17528478 AGTCCATTTG
*
17528488 TTA TTA TTA TTA TTA TTTA TT- TT- TTC TT- TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17528531 TT
1 TT
17528533 CTGGAAATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (3 bp):
TTA
Found at i:17530897 original size:3 final size:3
Alignment explanation
Indices: 17530889--17530913 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
17530879 ATATATAAGA
17530889 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
17530914 GGTTTAGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:17535031 original size:21 final size:20
Alignment explanation
Indices: 17535006--17535048 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
17534996 TGAATTTTTA
17535006 GAAAAAGAAAATTT-TGATTT
1 GAAAAAG-AAATTTATGATTT
17535026 GAAAAAGAAATTTGATGATTT
1 GAAAAAGAAATTT-ATGATTT
17535047 GA
1 GA
17535049 TGAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.33
Consensus pattern (20 bp):
GAAAAAGAAATTTATGATTT
Found at i:17538576 original size:38 final size:38
Alignment explanation
Indices: 17538525--17538601 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
17538515 TTAAGTTGTG
* *
17538525 TTGGATTAGGATGCATAAAATGATGGGGAGTTTTACCA
1 TTGGATTAGGATGCACAAAATGAAGGGGAGTTTTACCA
* *
17538563 TTGGATTAGGATGCACAAATTGAAGGGGAGTTTTTCCA
1 TTGGATTAGGATGCACAAAATGAAGGGGAGTTTTACCA
17538601 T
1 T
17538602 GCATTAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.09, G:0.29, T:0.32
Consensus pattern (38 bp):
TTGGATTAGGATGCACAAAATGAAGGGGAGTTTTACCA
Found at i:17540755 original size:18 final size:19
Alignment explanation
Indices: 17540715--17540756 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17540705 ACAAAAAATT
*
17540715 AAAAAAATCTAAAAGTTTT
1 AAAAAAATCTAAAAGTTTC
*
17540734 AAAAAAATCTAACA-TTTC
1 AAAAAAATCTAAAAGTTTC
17540752 AAAAA
1 AAAAA
17540757 TTTTAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAAAATCTAAAAGTTTC
Found at i:17540771 original size:15 final size:15
Alignment explanation
Indices: 17540753--17540801 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
17540743 TAACATTTCA
*
17540753 AAAATTTTAAAATCT
1 AAAATTTTAAAATAT
*
17540768 AAAAATTTAAAATAT
1 AAAATTTTAAAATAT
*
17540783 -AAATTTTGAAAAAAT
1 AAAATTTT-AAAATAT
17540798 AAAA
1 AAAA
17540802 AGTTTTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 6 0.21
15 19 0.68
16 3 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAATTTTAAAATAT
Found at i:17540913 original size:23 final size:25
Alignment explanation
Indices: 17540877--17540923 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
17540867 ATAAATGTAA
17540877 CTAAAAATCTAAAA-AA-TTAAAAT
1 CTAAAAATCTAAAAGAAGTTAAAAT
17540900 CTAAAAAT-TCAAAAGAAGTTAAAA
1 CTAAAAATCT-AAAAGAAGTTAAAA
17540924 AAAGAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 1 0.05
23 12 0.57
24 2 0.10
25 6 0.29
ACGTcount: A:0.64, C:0.09, G:0.04, T:0.23
Consensus pattern (25 bp):
CTAAAAATCTAAAAGAAGTTAAAAT
Found at i:17540963 original size:16 final size:17
Alignment explanation
Indices: 17540944--17540982 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
17540934 ATAAAATTTT
17540944 AATTTTTAAAAATC-AA
1 AATTTTTAAAAATCTAA
*
17540960 AA-TTTTAAAACTCTAA
1 AATTTTTAAAAATCTAA
17540976 AATTTTT
1 AATTTTT
17540983 TAAATGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 10 0.50
16 6 0.30
17 4 0.20
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTTTAAAAATCTAA
Found at i:17541040 original size:19 final size:18
Alignment explanation
Indices: 17541012--17541080 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
17541002 TAAAACATTA
17541012 AAAATAAAAAAAATTATTG
1 AAAAT-AAAAAAATTATTG
17541031 AAAATCAAAAAAATTTATTG
1 AAAAT-AAAAAAA-TTATTG
*
17541051 AATATAAAAAAA-TA--G
1 AAAATAAAAAAATTATTG
*
17541066 AAATTAAAAAAATTA
1 AAAATAAAAAAATTA
17541081 ATTTTTATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.25
16 2 0.05
17 2 0.05
19 19 0.43
20 10 0.23
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATAAAAAAATTATTG
Found at i:17541040 original size:20 final size:19
Alignment explanation
Indices: 17541012--17541062 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
17541002 TAAAACATTA
17541012 AAAATAAAAAAAATTATTG
1 AAAATAAAAAAAATTATTG
*
17541031 AAAATCAAAAAAATTTATTG
1 AAAAT-AAAAAAAATTATTG
*
17541051 AATATAAAAAAA
1 AAAATAAAAAAA
17541063 TAGAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (19 bp):
AAAATAAAAAAAATTATTG
Found at i:17541275 original size:21 final size:21
Alignment explanation
Indices: 17541246--17541285 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
17541236 AGCAGAAAAC
17541246 AATACCTTTACTTAAGTAGTA
1 AATACCTTTACTTAAGTAGTA
*
17541267 AATATCTTTACTTAAGTAG
1 AATACCTTTACTTAAGTAG
17541286 GTATGTGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (21 bp):
AATACCTTTACTTAAGTAGTA
Found at i:17541581 original size:21 final size:20
Alignment explanation
Indices: 17541546--17541591 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
17541536 TAATTTTATA
17541546 TTTATATTAAAAAATAATAT
1 TTTATATTAAAAAATAATAT
17541566 TTTATATTATAAAAATAATAT
1 TTTATATTA-AAAAATAATAT
*
17541587 ATTAT
1 TTTAT
17541592 TAATTTCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTATATTAAAAAATAATAT
Found at i:17541592 original size:26 final size:27
Alignment explanation
Indices: 17541532--17541592 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
17541522 TTATATATTT
*
17541532 TATATAATTTTATATTTATATTAAAAAA
1 TATATTATTTTATATTTATA-TAAAAAA
17541560 TA-A-TATTTTATA-TTATA-AAAATAA
1 TATATTATTTTATATTTATATAAAA-AA
17541584 TATATTATT
1 TATATTATT
17541593 AATTTCAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 6 0.21
26 12 0.41
27 1 0.03
28 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TATATTATTTTATATTTATATAAAAAA
Found at i:17542178 original size:13 final size:13
Alignment explanation
Indices: 17542159--17542198 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
17542149 ATCTACTTAA
17542159 ATATATTAAAATT
1 ATATATTAAAATT
* *
17542172 TTATATTAAAATA
1 ATATATTAAAATT
*
17542185 ATATATAAAAATT
1 ATATATTAAAATT
17542198 A
1 A
17542199 AAAAATTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATATTAAAATT
Found at i:17550789 original size:21 final size:21
Alignment explanation
Indices: 17550759--17550825 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
17550749 TGTGTTACTA
*
17550759 AATTTATTTCTAACATGTGTG
1 AATTTCTTTCTAACATGTGTG
*
17550780 AATTTCTTTCTAACAAGTGTG
1 AATTTCTTTCTAACATGTGTG
*
17550801 AATTTCTTTTTAACATGTGTG
1 AATTTCTTTCTAACATGTGTG
17550822 AATT
1 AATT
17550826 ACCACATGAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.48
Consensus pattern (21 bp):
AATTTCTTTCTAACATGTGTG
Found at i:17551056 original size:285 final size:285
Alignment explanation
Indices: 17550541--17551070 Score: 934
Period size: 285 Copynumber: 1.9 Consensus size: 285
17550531 GACGCATCAG
* * * *
17550541 ACCAGATGACTGGTAATGCATTAGTGTTCTATGAATACAACCCATGTTCTAAAAACCTCACAGTT
1 ACCACATGACTGGTAATGCATCAGTGTTCTATGAATACAACCAATGTTCTAAAAACCTCACAATT
* *
17550606 CGAATAGCAAATGGTCACTCTCCTGGGTAGCCACGACGGGTTCAGTCATTATTTCAAATGACATA
66 CGAATAACAAATGGTCACTCTCCTGGGTAGCCACGACGGGTTCAGTCATTATTTCAAAGGACATA
* *
17550671 ACACTTGACTTTGTTCTTCATGTCCCTAATTTAGATTGCAACCTTTTGACTATTAGTAAAATTAT
131 ACACTTGACTCTGTTCTTCATGTCCCTAATTTAGATTGCAACCTTTTGACTATTAGTAAAATTAC
*
17550736 GAGAAATCTTAATTGTGTTACTAAATTTATTTCTAACATGTGTGAATTTCTTTCTAACAAGTGTG
196 GAGAAATCTTAATTGTGTTACTAAATTTATTTCTAACATATGTGAATTTCTTTCTAACAAGTGTG
17550801 AATTTCTTTTTAACATGTGTGAATT
261 AATTTCTTTTTAACATGTGTGAATT
17550826 ACCACATGACTGGTAATGCATCAGTGTTCTATGAATACAACCAATGTTCTAAAAACCTCACAATT
1 ACCACATGACTGGTAATGCATCAGTGTTCTATGAATACAACCAATGTTCTAAAAACCTCACAATT
*
17550891 CGAATAACAAATGGTCACTCTCCTGGGTAGCCATGACGGGTTCAGTCATTATTTCAAAGGACATA
66 CGAATAACAAATGGTCACTCTCCTGGGTAGCCACGACGGGTTCAGTCATTATTTCAAAGGACATA
* *
17550956 ACACTTGACTCTGTTCTTCATGTCCCTAATTTAGATTGTAACCTTTTGTCTATTAGTAAAATTAC
131 ACACTTGACTCTGTTCTTCATGTCCCTAATTTAGATTGCAACCTTTTGACTATTAGTAAAATTAC
* *
17551021 GAGAGATCTTAATTGTGTTACTAAATTTCTTTCTAACATATGTGAATTTC
196 GAGAAATCTTAATTGTGTTACTAAATTTATTTCTAACATATGTGAATTTC
17551071 AAGGCTTGGA
Statistics
Matches: 231, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
285 231 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (285 bp):
ACCACATGACTGGTAATGCATCAGTGTTCTATGAATACAACCAATGTTCTAAAAACCTCACAATT
CGAATAACAAATGGTCACTCTCCTGGGTAGCCACGACGGGTTCAGTCATTATTTCAAAGGACATA
ACACTTGACTCTGTTCTTCATGTCCCTAATTTAGATTGCAACCTTTTGACTATTAGTAAAATTAC
GAGAAATCTTAATTGTGTTACTAAATTTATTTCTAACATATGTGAATTTCTTTCTAACAAGTGTG
AATTTCTTTTTAACATGTGTGAATT
Found at i:17560753 original size:11 final size:11
Alignment explanation
Indices: 17560719--17560761 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
17560709 AAATTTTAAA
* *
17560719 TTATATCATAT
1 TTATATTATTT
17560730 TTATATATATTT
1 TTATAT-TATTT
17560742 TTATATTATTT
1 TTATATTATTT
*
17560753 TCATATTAT
1 TTATATTAT
17560762 ACCATTCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (11 bp):
TTATATTATTT
Found at i:17562886 original size:21 final size:22
Alignment explanation
Indices: 17562839--17562887 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
17562829 TTATTTTTTT
* *
17562839 AAATATCTATAATCTATTCAAA
1 AAATATCTAAAATATATTCAAA
* *
17562861 TAATA-CTAAAATATATTTAAA
1 AAATATCTAAAATATATTCAAA
17562882 AAATAT
1 AAATAT
17562888 TTTTTGAAGG
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATATCTAAAATATATTCAAA
Found at i:17563649 original size:14 final size:15
Alignment explanation
Indices: 17563623--17563652 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
17563613 TGTTTGTAAT
17563623 ACTTTTAAAATATTA
1 ACTTTTAAAATATTA
17563638 ACTTTT-AAATATTA
1 ACTTTTAAAATATTA
17563652 A
1 A
17563653 TAAATTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
ACTTTTAAAATATTA
Found at i:17563678 original size:24 final size:24
Alignment explanation
Indices: 17563651--17563698 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
17563641 TTTAAATATT
17563651 AATAAATTT-ATAATTTTAATAATA
1 AATAAATTTAAT-ATTTTAATAATA
**
17563675 AATATTTTTAATATTTTAATAATA
1 AATAAATTTAATATTTTAATAATA
17563699 TATATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
AATAAATTTAATATTTTAATAATA
Found at i:17563703 original size:24 final size:24
Alignment explanation
Indices: 17563657--17563719 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
17563647 TATTAATAAA
17563657 TTTATAATTTTAATAATAAATA-TT
1 TTTA-AATTTTAATAATAAATATTT
*
17563681 TTTAATATTTTAATAATATATATTT
1 TTTAA-ATTTTAATAATAAATATTT
17563706 TTTAAATTTTAATA
1 TTTAAATTTTAATA
17563720 GTTATGCCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 1 0.03
24 28 0.78
25 7 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTAAATTTTAATAATAAATATTT
Found at i:17567275 original size:17 final size:18
Alignment explanation
Indices: 17567240--17567275 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
17567230 GAAACCCAAG
17567240 TTCCCAAATTTTCATTAA
1 TTCCCAAATTTTCATTAA
*
17567258 TTCCCTAATTTT-ATTAA
1 TTCCCAAATTTTCATTAA
17567275 T
1 T
17567276 CTATGCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (18 bp):
TTCCCAAATTTTCATTAA
Found at i:17568758 original size:22 final size:22
Alignment explanation
Indices: 17568714--17568758 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
17568704 TTGATGAATT
* *
17568714 TTTTTAAGTAAAATTTATAAAA
1 TTTTTAAGTAAAAATGATAAAA
* *
17568736 TTTTTAATTAAAAATGATTAAA
1 TTTTTAAGTAAAAATGATAAAA
17568758 T
1 T
17568759 AAAAATTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTTTAAGTAAAAATGATAAAA
Found at i:17568950 original size:14 final size:15
Alignment explanation
Indices: 17568931--17568961 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
17568921 TAAATTATAA
17568931 ATAAATTTTTTA-AT
1 ATAAATTTTTTACAT
17568945 ATAAATTTTTTACAT
1 ATAAATTTTTTACAT
17568960 AT
1 AT
17568962 TATTGATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
ATAAATTTTTTACAT
Found at i:17569685 original size:2 final size:2
Alignment explanation
Indices: 17569678--17569713 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
17569668 TTTGTATGTG
17569678 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17569714 GCCTCATGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17572974 original size:2 final size:2
Alignment explanation
Indices: 17572967--17572994 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17572957 TCAAATGGTA
17572967 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17572995 TGTTGGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17576458 original size:19 final size:18
Alignment explanation
Indices: 17576420--17576458 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
17576410 AATTTACAGT
*
17576420 CAAAGTACATTTTGTTAG
1 CAAAGTACATTTTATTAG
17576438 CAAAGTACATTTTAATTAG
1 CAAAGTACATTTT-ATTAG
17576457 CA
1 CA
17576459 TTCCTTGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (18 bp):
CAAAGTACATTTTATTAG
Found at i:17577787 original size:31 final size:31
Alignment explanation
Indices: 17577752--17577812 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
17577742 TATTCTTTAA
* *
17577752 TTACTCCAATATTTAAAGCATGATGGTAAAT
1 TTACTCCAAAATTAAAAGCATGATGGTAAAT
* *
17577783 TTACTCCAAAATTAAAAGTATGGTGGTAAA
1 TTACTCCAAAATTAAAAGCATGATGGTAAA
17577813 ATAGCACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (31 bp):
TTACTCCAAAATTAAAAGCATGATGGTAAAT
Found at i:17579917 original size:11 final size:11
Alignment explanation
Indices: 17579901--17579932 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
17579891 ATCTGTTTTA
17579901 TTGTTATTATT
1 TTGTTATTATT
17579912 TTGTTATTATT
1 TTGTTATTATT
*
17579923 ATGTTATTAT
1 TTGTTATTAT
17579933 ATTATCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (11 bp):
TTGTTATTATT
Found at i:17579929 original size:8 final size:8
Alignment explanation
Indices: 17579916--17580042 Score: 77
Period size: 8 Copynumber: 15.8 Consensus size: 8
17579906 ATTATTTTGT
17579916 TATTATTA
1 TATTATTA
*
17579924 TGTTATTA
1 TATTATTA
*
17579932 TATTATCA
1 TATTATTA
*
17579940 TATTGTTA
1 TATTATTA
17579948 TCA-TATTA
1 T-ATTATTA
17579956 TACTATATTA
1 TA-T-TATTA
*
17579966 TGTTA-TA
1 TATTATTA
17579973 TCA-TATTA
1 T-ATTATTA
17579981 T-TATATTA
1 TAT-TATTA
17579989 TATTATTA
1 TATTATTA
* *
17579997 TTACTATTG
1 -TATTATTA
*
17580006 TATTGTTA
1 TATTATTA
17580014 TATTA-TA
1 TATTATTA
17580021 GTA-TATTA
1 -TATTATTA
*
17580029 TATTAATA
1 TATTATTA
17580037 TATTAT
1 TATTAT
17580043 ATTTTTTATT
Statistics
Matches: 90, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
7 12 0.13
8 63 0.70
9 9 0.10
10 6 0.07
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.57
Consensus pattern (8 bp):
TATTATTA
Found at i:17579987 original size:5 final size:5
Alignment explanation
Indices: 17579950--17580045 Score: 78
Period size: 5 Copynumber: 20.0 Consensus size: 5
17579940 TATTGTTATC
* * *
17579950 ATATT ATACT ATATT ATGTT ATATC ATA-T -TATT ATATT ATATT ATTATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT A-TATT
* * *
17579999 ACTATT GTA-T -TGTT ATATT ATAGT ATATT ATATT A-A-T ATATT ATATT
1 A-TATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
17580046 TTTTATTTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
3 5 0.07
4 5 0.07
5 53 0.74
6 9 0.12
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:17580040 original size:13 final size:13
Alignment explanation
Indices: 17579969--17580045 Score: 61
Period size: 13 Copynumber: 5.8 Consensus size: 13
17579959 TATATTATGT
* *
17579969 TATATCATATTAT
1 TATATTATATTAA
17579982 TATATTATATT-A
1 TATATTATATTAA
*
17579994 T-TATTACTATT-G
1 TATATTA-TATTAA
*
17580006 TATTGTTATATTATA
1 TA-TATTATATTA-A
17580021 GTATATTATATTAA
1 -TATATTATATTAA
17580035 TATATTATATT
1 TATATTATATT
17580046 TTTTATTTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
11 5 0.10
12 6 0.12
13 25 0.48
14 5 0.10
15 9 0.17
16 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (13 bp):
TATATTATATTAA
Found at i:17580054 original size:6 final size:6
Alignment explanation
Indices: 17580045--17580077 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
17580035 TATATTATAT
*
17580045 TTTTTA TTTTTG TTTTTA TTTTTA TTTTT- TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
17580078 CCTTTCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (6 bp):
TTTTTA
Found at i:17580933 original size:12 final size:12
Alignment explanation
Indices: 17580912--17580984 Score: 62
Period size: 13 Copynumber: 6.0 Consensus size: 12
17580902 TCTTTTTTCT
*
17580912 ATTTTAATTTTA
1 ATTTTTATTTTA
17580924 ATTTTTA-TTT-
1 ATTTTTATTTTA
*
17580934 ATTTTATATTTTG
1 ATTTT-TATTTTA
17580947 ATTTTATATTTT-
1 ATTTT-TATTTTA
17580959 ATTTTTAGTTTTA
1 ATTTTTA-TTTTA
*
17580972 TTTGTTTATTTTA
1 ATT-TTTATTTTA
17580985 CTAATTTTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.09
11 7 0.13
12 18 0.34
13 19 0.36
14 4 0.08
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (12 bp):
ATTTTTATTTTA
Found at i:17580938 original size:29 final size:29
Alignment explanation
Indices: 17580906--17580962 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
17580896 AGGTTTTCTT
*
17580906 TTTTCTATTTTAATTTTA-ATTTTTATTTA
1 TTTTATATTTTAATTTTATA-TTTTATTTA
*
17580935 TTTTATATTTTGATTTTATATTTTATTT
1 TTTTATATTTTAATTTTATATTTTATTT
17580963 TTAGTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (29 bp):
TTTTATATTTTAATTTTATATTTTATTTA
Found at i:17580979 original size:20 final size:18
Alignment explanation
Indices: 17580912--17580983 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
17580902 TCTTTTTTCT
* * *
17580912 ATTTTAATTTTAATTTTT
1 ATTTTATTTTTTATTTTG
*
17580930 A-TTTATTTTATATTTTG
1 ATTTTATTTTTTATTTTG
* *
17580947 ATTTTATATTTTATTTTT
1 ATTTTATTTTTTATTTTG
17580965 AGTTTTATTTGTTTATTTT
1 A-TTTTATTT-TTTATTTT
17580984 ACTAATTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
17 13 0.30
18 15 0.35
19 7 0.16
20 8 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (18 bp):
ATTTTATTTTTTATTTTG
Found at i:17580999 original size:32 final size:31
Alignment explanation
Indices: 17580906--17581009 Score: 83
Period size: 32 Copynumber: 3.4 Consensus size: 31
17580896 AGGTTTTCTT
* *
17580906 TTTTCTATTTT-AATTT-TAATTTTTATTTA-
1 TTTTATATTTTGATTTTATAATTTTTA-TTAG
* *
17580935 TTTTATATTTTGATTTTATATTTTATTTTTAG
1 TTTTATATTTTGATTTTATAATTT-TTATTAG
*
17580967 TTTTAT-TTGTTTATTTTACTAATTTTTATTAG
1 TTTTATATT-TTGATTTTA-TAATTTTTATTAG
17580999 TTATT-TATTTT
1 TT-TTATATTTT
17581010 TATTGAGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
29 10 0.17
30 4 0.07
31 10 0.17
32 27 0.45
33 9 0.15
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (31 bp):
TTTTATATTTTGATTTTATAATTTTTATTAG
Found at i:17581013 original size:6 final size:6
Alignment explanation
Indices: 17580906--17581013 Score: 55
Period size: 6 Copynumber: 17.3 Consensus size: 6
17580896 AGGTTTTCTT
* * *
17580906 TTTTCTA TTTTAA TTTTAA TTTTTA --TTTA TTTTATA TTTTGA -TTTTA
1 TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTTTA TTTTTA
* *
17580953 TATTTTA TTTTTA GTTTTA TTTGTTTA TTTTACTAA TTTTTA TTAGTTA
1 T-TTTTA TTTTTA TTTTTA -TT-TTTA TTTT--T-A TTTTTA TT-TTTA
17581002 --TTTA TTTTTA TT
1 TTTTTA TTTTTA TT
17581014 GAGTGATTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 27
0.70 0.07 0.23
Matches are distributed among these distances:
4 7 0.09
5 4 0.05
6 36 0.45
7 23 0.29
8 5 0.06
9 5 0.06
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (6 bp):
TTTTTA
Found at i:17581022 original size:18 final size:17
Alignment explanation
Indices: 17580988--17581022 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
17580978 TATTTTACTA
*
17580988 ATTTTTATTAGTTATTT
1 ATTTTTATTAGTGATTT
17581005 ATTTTTATTGAGTGATTT
1 ATTTTTATT-AGTGATTT
17581023 TTCATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (17 bp):
ATTTTTATTAGTGATTT
Found at i:17581106 original size:22 final size:20
Alignment explanation
Indices: 17581045--17581111 Score: 55
Period size: 22 Copynumber: 3.1 Consensus size: 20
17581035 AATATTTTAC
17581045 AATAAAAAATATTTTT-TAGAA
1 AATAAAAAA-ATTTTTATA-AA
** *
17581066 AATAAAAAAATAATAATAAA
1 AATAAAAAAATTTTTATAAA
17581086 AGTATAAAAAAATTTTTATAATA
1 A--ATAAAAAAATTTTTATAA-A
17581109 AAT
1 AAT
17581112 TCATGAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 6 0.17
21 13 0.36
22 15 0.42
23 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAAAAAATTTTTATAAA
Found at i:17583237 original size:15 final size:15
Alignment explanation
Indices: 17583217--17583250 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
17583207 TGATCCAAAC
17583217 CAATTGGACCTAAAT
1 CAATTGGACCTAAAT
*
17583232 CAATTGGGCCTAAAT
1 CAATTGGACCTAAAT
17583247 CAAT
1 CAAT
17583251 CAAGTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (15 bp):
CAATTGGACCTAAAT
Found at i:17583430 original size:16 final size:16
Alignment explanation
Indices: 17583411--17583478 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
17583401 TTTTATCTGA
17583411 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
17583427 TTTA-TTTATCTTTAATT
1 TTTATTTTAT-TTT-ATT
* * *
17583444 TTAAGTTCA-TTTATT
1 TTTATTTTATTTTATT
17583459 TTTAATATTTATTTTATT
1 TTT-AT-TTTATTTTATT
17583477 TT
1 TT
17583479 ACTTTATCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
15 10 0.24
16 11 0.27
17 9 0.22
18 11 0.27
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:17583477 original size:22 final size:21
Alignment explanation
Indices: 17583383--17583477 Score: 70
Period size: 22 Copynumber: 4.4 Consensus size: 21
17583373 TGATTATTCT
* *
17583383 TTTTTTTTACTTTTAATTTT-
1 TTTTATTTATTTTTAATTTTA
17583403 TTATCTGATTTA-TTTT-ATTTTA
1 TT-T-T-ATTTATTTTTAATTTTA
*
17583425 TTTTTATTTATCTTTAATTTTAA
1 -TTTTATTTATTTTTAATTTT-A
* *
17583448 GTTCATTTATTTTTAATATTTA
1 TTTTATTTATTTTTAAT-TTTA
17583470 TTTTATTT
1 TTTTATTT
17583478 TACTTTATCT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
20 7 0.12
21 10 0.17
22 32 0.54
23 10 0.17
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTATTTATTTTTAATTTTA
Found at i:17583783 original size:20 final size:20
Alignment explanation
Indices: 17583742--17583783 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
17583732 AATAATCAAG
*
17583742 AACAACAACAATCAACAGAA
1 AACAACAACAATCAACACAA
17583762 AACAACAACAAATCAA-ACAA
1 AACAACAAC-AATCAACACAA
17583782 AA
1 AA
17583784 AATCAAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.69, C:0.24, G:0.02, T:0.05
Consensus pattern (20 bp):
AACAACAACAATCAACACAA
Found at i:17587010 original size:21 final size:22
Alignment explanation
Indices: 17586978--17587035 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 22
17586968 ATTTATTAAG
* *
17586978 AAAAACTATTCAAATATAAAAT
1 AAAAACTTTTCAAATATAAAAA
*
17587000 AAAAA-TTTTCATAT-TAAAAA
1 AAAAACTTTTCAAATATAAAAA
17587020 AAAAACTTTT-AAATAT
1 AAAAACTTTTCAAATAT
17587036 TCTAATACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 13 0.43
21 12 0.40
22 5 0.17
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAAACTTTTCAAATATAAAAA
Found at i:17587022 original size:19 final size:19
Alignment explanation
Indices: 17586971--17587023 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
17586961 CACTCATATT
* *
17586971 TATTAAGAAAAACTATTCA
1 TATTAAAAAAAAATATTCA
* *
17586990 AATATAAAATAAAAATTTTCA
1 TAT-TAAAA-AAAAATATTCA
17587011 TATTAAAAAAAAA
1 TATTAAAAAAAAA
17587024 ACTTTTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 7 0.26
20 9 0.33
21 11 0.41
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (19 bp):
TATTAAAAAAAAATATTCA
Found at i:17589189 original size:12 final size:12
Alignment explanation
Indices: 17589174--17589205 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
17589164 TTTCAAAAGT
17589174 TTTTTTTTTAAC
1 TTTTTTTTTAAC
*
17589186 TTTTTTTTTACC
1 TTTTTTTTTAAC
17589198 TTTTTTTT
1 TTTTTTTT
17589206 AGAAGTGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTAAC
Found at i:17589305 original size:41 final size:41
Alignment explanation
Indices: 17589248--17589332 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
17589238 ACTTATAAAA
* * *
17589248 AAATCTTGTTTGAAAATGGTTCCCCCTAAATAGAGGTTTTG
1 AAATCTTGTTTGAAAATGGCTCCCCCAAAATAGAGGCTTTG
*
17589289 AAATCTTGTTTGAAAATTGCTCCCCCAAAATAGAGGCTTTG
1 AAATCTTGTTTGAAAATGGCTCCCCCAAAATAGAGGCTTTG
17589330 AAA
1 AAA
17589333 CTTTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (41 bp):
AAATCTTGTTTGAAAATGGCTCCCCCAAAATAGAGGCTTTG
Found at i:17589344 original size:51 final size:51
Alignment explanation
Indices: 17589289--17589392 Score: 154
Period size: 51 Copynumber: 2.0 Consensus size: 51
17589279 AGAGGTTTTG
* * *
17589289 AAATCTTGTTTGAAAATTGCTCCCCCAAAATAGAGGCTTTGAAACTTTAAA
1 AAATCTTGTTTGAAAATTGCTCCCCCAAAACAAAGGCTTTAAAACTTTAAA
* * *
17589340 AAATCTTGTTTGAAAATTGCTCCCCCTAAACAAATGCTTTAAAACTTTGAA
1 AAATCTTGTTTGAAAATTGCTCCCCCAAAACAAAGGCTTTAAAACTTTAAA
17589391 AA
1 AA
17589393 TGGCTCCCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (51 bp):
AAATCTTGTTTGAAAATTGCTCCCCCAAAACAAAGGCTTTAAAACTTTAAA
Found at i:17589415 original size:36 final size:36
Alignment explanation
Indices: 17589348--17589428 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
17589338 AAAAATCTTG
* *
17589348 TTTGAAAATTGCTCCCCCTAAACAAATGCTTTAAAA
1 TTTGAAAATGGCTCCCCCTAAACAAAGGCTTTAAAA
* * *
17589384 CTTTGAAAATGGCT-CCCCTAAATAGAGGCTTTGAAA
1 -TTTGAAAATGGCTCCCCCTAAACAAAGGCTTTAAAA
*
17589420 TTTTAAAAT
1 TTTGAAAAT
17589429 CTAAAATGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 8 0.21
36 18 0.47
37 12 0.32
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (36 bp):
TTTGAAAATGGCTCCCCCTAAACAAAGGCTTTAAAA
Found at i:17589827 original size:188 final size:185
Alignment explanation
Indices: 17589467--17590047 Score: 445
Period size: 187 Copynumber: 3.0 Consensus size: 185
17589457 AATAATGCCC
* ** * * *
17589467 AGAGGTCTTATAAATCTTGACATCTTTGAATGCTCATTCCAATCAAAGGTATTGAAACTTTGAAA
1 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCCCAATCAAAGGCATTGAAACTTTAAAA
*
17589532 ATTTAAAATGTTTTACCCAGAGGTCTTGGAGATTATGCTCGGTAATCTTACAAATCTCAATATCT
66 ATTTAAAATGTTTTA-CCAGAGGTCTTAGAGATTATGCTC-GTAATCTTACAAATCTCAATATCT
* *
17589597 TTGAATGCTCCTCTCAATCAGAGGCATTGGGACTTTAAAATTTTAAAAAGGTTTGGCT
129 TTGAATGCTCCTCTCAATCAGAAGCATTGAGACTTTAAAA-TTTAAAAAGGTTTGGCT
* * *
17589655 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATTAGAGGCATTGAAACTTTAAAA
1 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCCCAATCAAAGGCATTGAAACTTTAAAA
* * * * * **
17589720 ATTTAAAATGATTTT-TCGGAGGTTTTAGAGATTATG-T-TTAAAGGTTTTACAAATCTTGATAT
66 ATTTAAAATG-TTTTACCAGAGGTCTTAGAGATTATGCTCGT-AA--TCTTACAAATCTCAATAT
* * * *
17589782 CTTTGCATGCTCAT-TCTAATTAGAAGCATTGAGACTTTAAAAATTTAAAATGGTTT-GCT
127 CTTTGAATGCTCCTCTC-AATCAGAAGCATTGAGACTTT-AAAATTTAAAAAGGTTTGGCT
* * * *
17589841 CAAAGGTCTTGGAGATTATGCCTGAAGGTCTTACAAATCTTAATATTTTTGAATGCTCCTCCCAA
1 -AGAGGTC-------TTA---C--AA-ATC-T-C-AA-C-----ATCTTTGAATGCTCATCCCAA
* * * *
17589906 TCAAAGGCATTGAAACTTTAAAAATTTAAAATGGTTTGCCTGGAGGTCTTGGAGATTATG-TCTG
43 TCAAAGGCATTGAAACTTTAAAAATTTAAAATGTTTTACC-AGAGGTCTTAGAGATTATGCTC-G
* ** * * * *
17589970 TAGGTCTTACAAATCTTGACATCTTTGAATGTTCCTCCCAATCAGAAGCATTAAGACTTTAAAAG
106 TA-ATCTTACAAATCTCAATATCTTTGAATGCTCCTCTCAATCAGAAGCATTGAGACTTTAAAA-
*
17590035 TTTAAAATGGTTT
169 TTTAAAAAGGTTT
17590048 TGTCTGAAGG
Statistics
Matches: 315, Mismatches: 42, Indels: 50
0.77 0.10 0.12
Matches are distributed among these distances:
184 1 0.00
185 2 0.01
186 6 0.02
187 80 0.25
188 70 0.22
189 4 0.01
194 3 0.01
197 1 0.00
199 2 0.01
200 2 0.01
201 1 0.00
202 1 0.00
203 2 0.01
204 1 0.00
208 3 0.01
209 56 0.18
210 77 0.24
211 2 0.01
212 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (185 bp):
AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCCCAATCAAAGGCATTGAAACTTTAAAA
ATTTAAAATGTTTTACCAGAGGTCTTAGAGATTATGCTCGTAATCTTACAAATCTCAATATCTTT
GAATGCTCCTCTCAATCAGAAGCATTGAGACTTTAAAATTTAAAAAGGTTTGGCT
Found at i:17589916 original size:105 final size:105
Alignment explanation
Indices: 17589657--17590047 Score: 484
Period size: 105 Copynumber: 3.7 Consensus size: 105
17589647 GTTTGGCTAG
* * *
17589657 AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATTAGAGGCATTGAAACTTTAAAAAT
1 AGGTCTTACAAATCTTAACATCTTTGAATGCTCCTCCCAATCAGAAGCATTGAAACTTTAAAAAT
* * * * * *
17589722 TTAAAATGATTT-TTCGGAGGTTTTAGAGATTATGTTTAA
66 TTAAAATGGTTTGCTCGGAGGTCTTGGAGATTATGTCTGA
* * * * * * * * *
17589761 AGGTTTTACAAATCTTGATATCTTTGCATGCTCATTCTAATTAGAAGCATTGAGACTTTAAAAAT
1 AGGTCTTACAAATCTTAACATCTTTGAATGCTCCTCCCAATCAGAAGCATTGAAACTTTAAAAAT
** *
17589826 TTAAAATGGTTTGCTCAAAGGTCTTGGAGATTATGCCTGA
66 TTAAAATGGTTTGCTCGGAGGTCTTGGAGATTATGTCTGA
* *
17589866 AGGTCTTACAAATCTTAATATTTTTGAATGCTCCTCCCAATCA-AAGGCATTGAAACTTTAAAAA
1 AGGTCTTACAAATCTTAACATCTTTGAATGCTCCTCCCAATCAGAA-GCATTGAAACTTTAAAAA
*
17589930 TTTAAAATGGTTTGC-CTGGAGGTCTTGGAGATTATGTCTGT
65 TTTAAAATGGTTTGCTC-GGAGGTCTTGGAGATTATGTCTGA
* * *
17589971 AGGTCTTACAAATCTTGACATCTTTGAATGTTCCTCCCAATCAGAAGCATT-AAGACTTTAAAAG
1 AGGTCTTACAAATCTTAACATCTTTGAATGCTCCTCCCAATCAGAAGCATTGAA-ACTTTAAAAA
17590035 TTTAAAATGGTTT
65 TTTAAAATGGTTT
17590048 TGTCTGAAGG
Statistics
Matches: 245, Mismatches: 37, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
104 71 0.29
105 172 0.70
106 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (105 bp):
AGGTCTTACAAATCTTAACATCTTTGAATGCTCCTCCCAATCAGAAGCATTGAAACTTTAAAAAT
TTAAAATGGTTTGCTCGGAGGTCTTGGAGATTATGTCTGA
Found at i:17590047 original size:210 final size:209
Alignment explanation
Indices: 17589657--17590047 Score: 566
Period size: 210 Copynumber: 1.9 Consensus size: 209
17589647 GTTTGGCTAG
* *
17589657 AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATTAGAGGCATTGAAACTTTAAAAAT
1 AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATCAAAGGCATTGAAACTTTAAAAAT
** * * * *
17589722 TTAAAATGATTTTTCGGAGGTTTTAGAGATTATGTTTAAAGGTTTTACAAATCTTGATATCTTTG
66 TTAAAATGATTTGCCGGAGGTCTTAGAGATTATGTCTAAAGGTCTTACAAATCTTGACATCTTTG
* * * * *
17589787 CATGCTCATTCTAATTAGAAGCATTGAGACTTTAAAAATTTAAAATGGTTTGCTCAAAGGTCTTG
131 AATGCTCATCCCAATCAGAAGCATTAAGACTTTAAAAATTTAAAATGGTTTGCTCAAAGGTCTTG
17589852 GAGATTATGCCTGA
196 GAGATTATGCCTGA
* * *
17589866 AGGTCTTACAAATCTTAATATTTTTGAATGCTCCTCCCAATCAAAGGCATTGAAACTTTAAAAAT
1 AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATCAAAGGCATTGAAACTTTAAAAAT
* * **
17589931 TTAAAATGGTTTGCCTGGAGGTCTTGGAGATTATGTCTGTAGGTCTTACAAATCTTGACATCTTT
66 TTAAAATGATTTGCC-GGAGGTCTTAGAGATTATGTCTAAAGGTCTTACAAATCTTGACATCTTT
* * *
17589996 GAATGTTCCTCCCAATCAGAAGCATTAAGACTTTAAAAGTTTAAAATGGTTT
130 GAATGCTCATCCCAATCAGAAGCATTAAGACTTTAAAAATTTAAAATGGTTT
17590048 TGTCTGAAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
209 72 0.46
210 86 0.54
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (209 bp):
AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAATCAAAGGCATTGAAACTTTAAAAAT
TTAAAATGATTTGCCGGAGGTCTTAGAGATTATGTCTAAAGGTCTTACAAATCTTGACATCTTTG
AATGCTCATCCCAATCAGAAGCATTAAGACTTTAAAAATTTAAAATGGTTTGCTCAAAGGTCTTG
GAGATTATGCCTGA
Found at i:17590733 original size:41 final size:41
Alignment explanation
Indices: 17590666--17590750 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 41
17590656 AAACGATGCA
* * *
17590666 AATGTTTTTCTCAAGATGCAGTTGCTAATGATGCAAATATG
1 AATGTTTTTCTCAAGATGAAGATGCTAATGATACAAATATG
* * *
17590707 AATGTATTTT-TCATGATGAAGATGCTAGTGATACAAATGTG
1 AATGT-TTTTCTCAAGATGAAGATGCTAATGATACAAATATG
17590748 AAT
1 AAT
17590751 ATCTATTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 33 0.89
42 4 0.11
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (41 bp):
AATGTTTTTCTCAAGATGAAGATGCTAATGATACAAATATG
Found at i:17590764 original size:41 final size:41
Alignment explanation
Indices: 17590688--17590765 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
17590678 AAGATGCAGT
* *
17590688 TGCTAATGATGCAAATATGAATGTATTTTTCATGATGAAGA
1 TGCTAATGATACAAATATGAATATATTTTTCATGATGAAGA
* * *
17590729 TGCTAGTGATACAAATGTGAATATCTATTTT-ATGATG
1 TGCTAATGATACAAATATGAATATAT-TTTTCATGATG
17590766 TAGCTATGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 27 0.87
42 4 0.13
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (41 bp):
TGCTAATGATACAAATATGAATATATTTTTCATGATGAAGA
Found at i:17595967 original size:33 final size:32
Alignment explanation
Indices: 17595925--17595996 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 32
17595915 CTCAACTTTG
* *
17595925 ACTTGATTTTTAAAAAA-ATTACATGTGACTTCA
1 ACTTGATTTTTAAAAAAGATT--ATATAACTTCA
17595958 ACTTGA-TTTTAAAAAAGATTATATAACTTCA
1 ACTTGATTTTTAAAAAAGATTATATAACTTCA
17595989 ACTTGATT
1 ACTTGATT
17595997 CAATATTGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 15 0.43
32 11 0.31
33 9 0.26
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.40
Consensus pattern (32 bp):
ACTTGATTTTTAAAAAAGATTATATAACTTCA
Found at i:17596137 original size:15 final size:16
Alignment explanation
Indices: 17596106--17596138 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
17596096 TTTAATTTAT
17596106 TATTATATTTATAAAA
1 TATTATATTTATAAAA
*
17596122 TATTAT-TTTTTAAAA
1 TATTATATTTATAAAA
17596137 TA
1 TA
17596139 AATTATATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATATTTATAAAA
Found at i:17596185 original size:17 final size:17
Alignment explanation
Indices: 17596155--17596190 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
17596145 ATCTTAATTA
17596155 TTTATAAATATAATATT
1 TTTATAAATATAATATT
17596172 TTTATTAAAT-TAATATT
1 TTTA-TAAATATAATATT
17596189 TT
1 TT
17596191 AAATTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTATAAATATAATATT
Found at i:17596196 original size:18 final size:18
Alignment explanation
Indices: 17596159--17596198 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
17596149 TAATTATTTA
*
17596159 TAAATATAATATTTTTAT
1 TAAATATAATATTTTAAT
17596177 TAAAT-TAATATTTTAAAT
1 TAAATATAATATTTT-AAT
17596195 TAAA
1 TAAA
17596199 ATATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATATAATATTTTAAT
Found at i:17596256 original size:16 final size:18
Alignment explanation
Indices: 17596237--17596269 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
17596227 ATACACATAT
17596237 ATAAAT-ATAA-ATATAA
1 ATAAATAATAACATATAA
17596253 ATAAATAATAACATATA
1 ATAAATAATAACATATA
17596270 GTTTTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAATAATAACATATAA
Found at i:17606263 original size:28 final size:28
Alignment explanation
Indices: 17606203--17606264 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
17606193 AGGAGGATGG
*
17606203 GAAGAGAGAGGGGGAGGGAAGGAAGGGAA
1 GAAGAGAGAGGGAGAGGG-AGGAAGGGAA
*
17606232 -AAGAGAGAGGGAGAGGG-GTAAGGGGAA
1 GAAGAGAGAGGGAGAGGGAGGAA-GGGAA
17606259 GAAGAG
1 GAAGAG
17606265 GCATCGCCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 3 0.10
27 5 0.17
28 21 0.72
ACGTcount: A:0.42, C:0.00, G:0.56, T:0.02
Consensus pattern (28 bp):
GAAGAGAGAGGGAGAGGGAGGAAGGGAA
Found at i:17606982 original size:17 final size:18
Alignment explanation
Indices: 17606960--17606999 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
17606950 ATATATATAA
*
17606960 ATAAAAAT-AAAAATTAT
1 ATAAAAATAAAAAAATAT
17606977 ATAAAAATAAAAAAATAT
1 ATAAAAATAAAAAAATAT
17606995 ATAAA
1 ATAAA
17607000 TTTTACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAAAAATAAAAAAATAT
Found at i:17606994 original size:16 final size:17
Alignment explanation
Indices: 17606956--17607000 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
17606946 AATCATATAT
17606956 ATAA-ATAAAAATAAAA
1 ATAATATAAAAATAAAA
*
17606972 ATTATATAAAAATAAAA
1 ATAATATAAAAATAAAA
*
17606989 A-AATATATAAAT
1 ATAATATAAAAAT
17607001 TTTACTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAATATAAAAATAAAA
Found at i:17607037 original size:2 final size:2
Alignment explanation
Indices: 17607032--17607065 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
17607022 TGAATTAATT
*
17607032 TA TA TA TA -A TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17607066 GAATTTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:17607064 original size:29 final size:29
Alignment explanation
Indices: 17607009--17607072 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
17606999 ATTTTACTTT
*
17607009 TAATTTATATATATGAATTAATTTATATA
1 TAATTTATATATATGAATTAATATATATA
17607038 TAATTTATATATAT--A-TATATATATATA
1 TAATTTATATATATGAATTA-ATATATATA
17607065 TGAATTTA
1 T-AATTTA
17607073 GATTAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 2 0.06
27 10 0.31
28 6 0.19
29 14 0.44
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
TAATTTATATATATGAATTAATATATATA
Found at i:17608626 original size:22 final size:22
Alignment explanation
Indices: 17608600--17608642 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
17608590 CCAGAATTCC
17608600 TTTTTGTTTATCTCTAAGTTTT
1 TTTTTGTTTATCTCTAAGTTTT
17608622 TTTTTGTTTATCTCTAAGTTT
1 TTTTTGTTTATCTCTAAGTTT
17608643 ATTCTGAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67
Consensus pattern (22 bp):
TTTTTGTTTATCTCTAAGTTTT
Found at i:17612308 original size:11 final size:10
Alignment explanation
Indices: 17612288--17612318 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
17612278 TTGGTTTTGG
*
17612288 TTTTGGTTTT
1 TTTTTGTTTT
17612298 TTTTTGTTTT
1 TTTTTGTTTT
17612308 TTTTTGTTTT
1 TTTTTGTTTT
17612318 T
1 T
17612319 CTCTTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:17614163 original size:28 final size:28
Alignment explanation
Indices: 17614131--17614186 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
17614121 TTTCTTAATG
* *
17614131 TGATAATGTGCCCGTAAAGCTATTTTGT
1 TGATAATGTACCCATAAAGCTATTTTGT
17614159 TGATAATGTACCCATAAAGCTATTTTGT
1 TGATAATGTACCCATAAAGCTATTTTGT
17614187 CTTACCTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (28 bp):
TGATAATGTACCCATAAAGCTATTTTGT
Found at i:17624284 original size:16 final size:16
Alignment explanation
Indices: 17624263--17624293 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
17624253 TCTGATACCA
17624263 TGTGGAAAAATTGAGC
1 TGTGGAAAAATTGAGC
17624279 TGTGGAAAAATTGAG
1 TGTGGAAAAATTGAG
17624294 AGTGTATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (16 bp):
TGTGGAAAAATTGAGC
Found at i:17627421 original size:37 final size:37
Alignment explanation
Indices: 17627378--17627449 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
17627368 CTGTTAATGG
* **
17627378 TTAATAGTTATATTTTACTTAAACTTATTTTTAATAA
1 TTAATAGTTATATTATAAATAAACTTATTTTTAATAA
*
17627415 TTAATAGTTATATTATAAATAATCTTATTTTTAAT
1 TTAATAGTTATATTATAAATAAACTTATTTTTAAT
17627450 TTCCCAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (37 bp):
TTAATAGTTATATTATAAATAAACTTATTTTTAATAA
Found at i:17628788 original size:23 final size:24
Alignment explanation
Indices: 17628744--17628792 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
17628734 ATGTTGCTTG
* *
17628744 GTATCTCCTTTTTTCTAGTTTAAT
1 GTATCTCCTTTTTACTAATTTAAT
17628768 GTATCTCC-TTTTACTAATTTAAT
1 GTATCTCCTTTTTACTAATTTAAT
17628791 GT
1 GT
17628793 TTGTCTATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.55
Consensus pattern (24 bp):
GTATCTCCTTTTTACTAATTTAAT
Found at i:17633461 original size:18 final size:20
Alignment explanation
Indices: 17633424--17633466 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
17633414 CTATGGTTAA
17633424 TATTTGTTCAAATT-ATTTT
1 TATTTGTTCAAATTAATTTT
*
17633443 TATTTGTT-TAATTAATTTT
1 TATTTGTTCAAATTAATTTT
17633462 TATTT
1 TATTT
17633467 ATTTTCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (20 bp):
TATTTGTTCAAATTAATTTT
Found at i:17639848 original size:104 final size:104
Alignment explanation
Indices: 17639657--17639863 Score: 292
Period size: 104 Copynumber: 2.0 Consensus size: 104
17639647 GGCCTCCCCA
* * *
17639657 CCCTCATTTGATGTACTAAAACACTTGAGTGAATATAAGTTACAATATTTTCAAGCATCTTTTGC
1 CCCTCATTTGATGTACTAAAACACTTGAATGAATATAAGTTACAACATTTTCAAGCATCTCTTGC
*
17639722 ATTCTAGCCTTTTCTAGCTTTAGAATGCCTTTTAGTGTC
66 ATTCTAGCATTTTCTAGCTTTAGAATGCCTTTTAGTGTC
*
17639761 CCCTCATTTGATGTAGTGAAAA-ACTTGAATGAATATAAGTTACAACA-TTTCTAAGCATCTCTT
1 CCCTCATTTGATGTACT-AAAACACTTGAATGAATATAAGTTACAACATTTTC-AAGCATCTCTT
* * * * *
17639824 GCTTTCTAGCATTTTTTAGTTTTAGAGTGCTTTTTAGTGT
64 GCATTCTAGCATTTTCTAGCTTTAGAATGCCTTTTAGTGT
17639864 TTTTTTGAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
103 4 0.04
104 83 0.91
105 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (104 bp):
CCCTCATTTGATGTACTAAAACACTTGAATGAATATAAGTTACAACATTTTCAAGCATCTCTTGC
ATTCTAGCATTTTCTAGCTTTAGAATGCCTTTTAGTGTC
Found at i:17641173 original size:13 final size:12
Alignment explanation
Indices: 17641145--17641184 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
17641135 TCAATAAATT
17641145 ATTTTATTTAAA
1 ATTTTATTTAAA
*
17641157 ATTTTATTCTTAA
1 ATTTTATT-TAAA
*
17641170 ATTTGATTTAAA
1 ATTTTATTTAAA
17641182 ATT
1 ATT
17641185 ATTTTTATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (12 bp):
ATTTTATTTAAA
Found at i:17642219 original size:10 final size:10
Alignment explanation
Indices: 17642204--17642236 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
17642194 GAAGATTCTC
17642204 ATATATATGT
1 ATATATATGT
17642214 ATATATATGT
1 ATATATATGT
*
17642224 ATGTATATGT
1 ATATATATGT
17642234 ATA
1 ATA
17642237 AAACAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (10 bp):
ATATATATGT
Found at i:17648928 original size:12 final size:12
Alignment explanation
Indices: 17648891--17648928 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
17648881 TTTAGTAGGA
*
17648891 TTGAAAATATTT
1 TTGAAAATTTTT
*
17648903 TTGAAATTTTTT
1 TTGAAAATTTTT
17648915 TTGAAAATTTTT
1 TTGAAAATTTTT
17648927 TT
1 TT
17648929 TTAAATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (12 bp):
TTGAAAATTTTT
Found at i:17649006 original size:19 final size:19
Alignment explanation
Indices: 17648984--17649023 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
17648974 GCAAAATAGT
*
17648984 ATCACGCAATATTAATATA
1 ATCACGCAATAATAATATA
* *
17649003 ATCATGCAATAATAGTATA
1 ATCACGCAATAATAATATA
17649022 AT
1 AT
17649024 ATACCATGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.33
Consensus pattern (19 bp):
ATCACGCAATAATAATATA
Found at i:17649230 original size:16 final size:16
Alignment explanation
Indices: 17649209--17649244 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
17649199 TAAAAGAAAT
17649209 AAAATAAAACAAAACA
1 AAAATAAAACAAAACA
* *
17649225 AAAATAAAATAAAATA
1 AAAATAAAACAAAACA
17649241 AAAA
1 AAAA
17649245 CATCAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (16 bp):
AAAATAAAACAAAACA
Found at i:17649239 original size:26 final size:25
Alignment explanation
Indices: 17649205--17649273 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 25
17649195 ATAATAAAAG
17649205 AAATAAAATAAAACAAAACAAAAATA
1 AAATAAAATAAAA-AAAACAAAAATA
* *
17649231 AAATAAAATAAAAACATCAAAAAATA
1 AAATAAAATAAAAAAAAC-AAAAATA
* *
17649257 AAAAAAAAGAAAAAAAA
1 AAATAAAATAAAAAAAA
17649274 ACATGTGATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 3 0.08
26 33 0.92
ACGTcount: A:0.83, C:0.06, G:0.01, T:0.10
Consensus pattern (25 bp):
AAATAAAATAAAAAAAACAAAAATA
Found at i:17649259 original size:5 final size:5
Alignment explanation
Indices: 17649205--17649243 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
17649195 ATAATAAAAG
* *
17649205 AAATA AAATA AAACA AAACAA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAA-TA AAATA AAATA AAATA AAA
17649244 ACATCAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (5 bp):
AAATA
Found at i:17649262 original size:10 final size:10
Alignment explanation
Indices: 17649209--17649274 Score: 60
Period size: 10 Copynumber: 6.4 Consensus size: 10
17649199 TAAAAGAAAT
*
17649209 AAAATAAAAC
1 AAAATAAAAA
*
17649219 AAAACAAAAA
1 AAAATAAAAA
17649229 TAAAATAAAATA
1 -AAAATAAAA-A
* **
17649241 AAAACATCAA
1 AAAATAAAAA
17649251 AAAATAAAAA
1 AAAATAAAAA
*
17649261 AAAAGAAAAA
1 AAAATAAAAA
17649271 AAAA
1 AAAA
17649275 CATGTGATCG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
10 29 0.66
11 14 0.32
12 1 0.02
ACGTcount: A:0.83, C:0.06, G:0.02, T:0.09
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:17651254 original size:84 final size:83
Alignment explanation
Indices: 17651023--17651528 Score: 285
Period size: 84 Copynumber: 6.1 Consensus size: 83
17651013 ACTTATGAAC
* * * * ** * * *
17651023 AAATCTCGATTTTAAAATAAATTCAGCTT-AAAGACTTATGAATCTTACCCATAAGACTTAGAGA
1 AAATCTTGATTCTAAAACAGATTCAGCTTGAAAGACTTACAAATCTTGCCGA-AGGACTTAGAGA
* * *
17651087 TTACG-CTAGAGGTTTTAC
65 TTATGTCTAAAGGTTTTAT
** * * * ** * * * *
17651105 AAATCTCAATTTTAAAACAGATTCAGCTCGAAAGATTTATGAATTTTACCCAAAGAACTTAGAGA
1 AAATCTTGATTCTAAAACAGATTCAGCTTGAAAGACTTACAAATCTT-GCCGAAGGACTTAGAGA
17651170 TTATGTCTAAAGGTTTTAT
65 TTATGTCTAAAGGTTTTAT
* * * *
17651189 AAATCTTGGTTCTAAAATAGATTCAGCTTGAAAGACTTACAAATCTTGCCTGAAGGATTTGGAGA
1 AAATCTTGATTCTAAAACAGATTCAGCTTGAAAGACTTACAAATCTTGCC-GAAGGACTTAGAGA
* * *
17651254 TTATGTAC-GAAGGTTCTAC
65 TTATGT-CTAAAGGTTTTAT
* * * * * * * *
17651273 AAATTTTGACTCTAAAGCGGATTCAGCTCGAAAGACTTATAAATCTTACCAAAAGGACTTAGAGA
1 AAATCTTGATTCTAAAACAGATTCAGCTTGAAAGACTTACAAATCTTGCC-GAAGGACTTAGAGA
* *
17651338 CTACTTTC-AGAA-GTTTTACT
65 TTA-TGTCTA-AAGGTTTTA-T
* ** * * * * *
17651358 -AATCTCGAAACTAAAACAAATTTAACTTAGAAA-ACTTACAAATCTTGCCCGAAGGATTTAGTG
1 AAATCTTGATTCTAAAACAGATTCAGCTT-GAAAGACTTACAAATCTTG-CCGAAGGACTTAGAG
* * *
17651421 ATTAAGTCTGAAGATTTTAT
64 ATTATGTCTAAAGGTTTTAT
** * * * * * *
17651441 AAATC-AAACTT-TAAAAATAGATTTAGCTTGAAAGACTTATAAATCTTGTCGAAAGACTTAGTG
1 AAATCTTGA-TTCT-AAAACAGATTCAGCTTGAAAGACTTACAAATCTTGCCGAAGGACTTAGAG
*
17651504 ATTATGTCTGAAA-GTCTTAT
64 ATTATGTCT-AAAGGTTTTAT
17651524 AAATC
1 AAATC
17651529 AAACTTTAAA
Statistics
Matches: 323, Mismatches: 84, Indels: 33
0.73 0.19 0.08
Matches are distributed among these distances:
82 25 0.08
83 72 0.22
84 215 0.67
85 11 0.03
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (83 bp):
AAATCTTGATTCTAAAACAGATTCAGCTTGAAAGACTTACAAATCTTGCCGAAGGACTTAGAGAT
TATGTCTAAAGGTTTTAT
Found at i:17651524 original size:83 final size:83
Alignment explanation
Indices: 17651369--17651546 Score: 229
Period size: 83 Copynumber: 2.1 Consensus size: 83
17651359 ATCTCGAAAC
* *
17651369 TAAAACAA-ATTTAACTTAGAAAACTTACAAATCTTGCCCGAAGGATTTAGTGATTAAGTCTGAA
1 TAAAA-AAGATTTAACTTAGAAAACTTACAAATCTTGCCCGAAAGACTTAGTGATTAAGTCTGAA
*
17651433 GATTTTATAAATCAAACTT
65 GATCTTATAAATCAAACTT
* * * *
17651452 TAAAAATAGATTTAGCTT-GAAAGACTTATAAATCTTG-TCGAAAGACTTAGTGATTATGTCTGA
1 TAAAAA-AGATTTAACTTAGAAA-ACTTACAAATCTTGCCCGAAAGACTTAGTGATTAAGTCTGA
17651515 A-AGTCTTATAAATCAAACTT
64 AGA-TCTTATAAATCAAACTT
17651535 TAAAAAAGATTT
1 TAAAAAAGATTT
17651547 TTTAAATAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
82 8 0.10
83 55 0.65
84 21 0.25
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (83 bp):
TAAAAAAGATTTAACTTAGAAAACTTACAAATCTTGCCCGAAAGACTTAGTGATTAAGTCTGAAG
ATCTTATAAATCAAACTT
Found at i:17651817 original size:18 final size:18
Alignment explanation
Indices: 17651796--17651842 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
17651786 AATGCACGTG
* *
17651796 ATGCATATAATGCATGAA
1 ATGCATACAATGAATGAA
*
17651814 ATGCATACAATGAATGCA
1 ATGCATACAATGAATGAA
*
17651832 ATGCATGCAAT
1 ATGCATACAAT
17651843 CTATACCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (18 bp):
ATGCATACAATGAATGAA
Found at i:17656258 original size:33 final size:32
Alignment explanation
Indices: 17656213--17656277 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
17656203 TATATATAAC
* *
17656213 TTTTTTCTTATATTTA-ATATGTAAAACCTTTT
1 TTTTTTCATATATATATATATGTAAAA-CTTTT
17656245 TTTTTTCAATATATATATATATGTAAAACTTTT
1 TTTTTTC-ATATATATATATATGTAAAACTTTT
17656278 CTAAGATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 7 0.24
33 12 0.41
34 10 0.34
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (32 bp):
TTTTTTCATATATATATATATGTAAAACTTTT
Found at i:17656547 original size:70 final size:70
Alignment explanation
Indices: 17656464--17656602 Score: 233
Period size: 70 Copynumber: 2.0 Consensus size: 70
17656454 AAAAATTAAG
* * *
17656464 TACTACCATTAAAAGTAATTAAAGATTGTTATATCTTAATTAGGAAAGTGGACTCAACGTGATGC
1 TACTACCATTAAAAGTAAGTAAAGATTGTTATATATTAATTAGGAAAGTGGACTCAACATGATGC
17656529 GTACC
66 GTACC
**
17656534 TACTACCATTAAAAGTAAGTAAAGATTGTTATATATTAATTAGGTGAGTGGACTCAACATGATGC
1 TACTACCATTAAAAGTAAGTAAAGATTGTTATATATTAATTAGGAAAGTGGACTCAACATGATGC
17656599 GTAC
66 GTAC
17656603 TTTGTGTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (70 bp):
TACTACCATTAAAAGTAAGTAAAGATTGTTATATATTAATTAGGAAAGTGGACTCAACATGATGC
GTACC
Found at i:17657506 original size:3 final size:3
Alignment explanation
Indices: 17657498--17657545 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
17657488 GCTACACTTA
*
17657498 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17657546 AATATTGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:17658825 original size:13 final size:13
Alignment explanation
Indices: 17658807--17658853 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
17658797 GAAGTTTTTT
17658807 ATTAAAATTGAAA
1 ATTAAAATTGAAA
*
17658820 ATTAAAATTAAAA
1 ATTAAAATTGAAA
* *
17658833 AATAAAATTGATAG
1 ATTAAAATTGA-AA
17658847 ATTAAAA
1 ATTAAAA
17658854 AATTTCATCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (13 bp):
ATTAAAATTGAAA
Found at i:17669748 original size:19 final size:19
Alignment explanation
Indices: 17669726--17669765 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
17669716 CAAAAATAAT
* *
17669726 ATCACGCAATATTAATATA
1 ATCACACAATAATAATATA
*
17669745 ATCATACAATAATAATATA
1 ATCACACAATAATAATATA
17669764 AT
1 AT
17669766 ATGCCATGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.33
Consensus pattern (19 bp):
ATCACACAATAATAATATA
Found at i:17669793 original size:20 final size:20
Alignment explanation
Indices: 17669696--17669821 Score: 58
Period size: 20 Copynumber: 6.4 Consensus size: 20
17669686 AAAAAATTAA
*
17669696 AATAAATAAAAATTATCATGC
1 AATAAATATAAA-TATCATGC
*
17669717 -A-AAA-AT-AATATCACGC
1 AATAAATATAAATATCATGC
*
17669733 AAT--AT-TAATATAATCATAC
1 AATAAATATAA-AT-ATCATGC
17669752 AAT-AATAATATAATATGCCATGC
1 AATAAAT-ATA-AATAT--CATGC
17669775 AATAAATATAAATATCATGC
1 AATAAATATAAATATCATGC
*
17669795 AAATTAAT-TAACAT-TCATGC
1 -AATAAATATAA-ATATCATGC
17669815 AA-AAATA
1 AATAAATA
17669822 AATAAATAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 34
0.67 0.06 0.28
Matches are distributed among these distances:
16 9 0.11
17 4 0.05
18 6 0.07
19 13 0.16
20 17 0.21
21 10 0.12
22 9 0.11
23 11 0.13
24 3 0.04
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (20 bp):
AATAAATATAAATATCATGC
Found at i:17669912 original size:9 final size:8
Alignment explanation
Indices: 17669900--17669974 Score: 59
Period size: 8 Copynumber: 9.6 Consensus size: 8
17669890 AATAATAAGC
17669900 AAAAAATGA
1 AAAAAAT-A
*
17669909 AAAAAATT
1 AAAAAATA
*
17669917 AAAAGA-A
1 AAAAAATA
*
17669924 ATAAAATA
1 AAAAAATA
17669932 AAACAAA-A
1 AAA-AAATA
17669940 AAAAAA-A
1 AAAAAATA
*
17669947 ATAAAATA
1 AAAAAATA
17669955 AAAAAAT-
1 AAAAAATA
*
17669962 CAAAAATA
1 AAAAAATA
17669970 AAAAA
1 AAAAA
17669975 GAAAAAGAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
7 19 0.37
8 23 0.44
9 10 0.19
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:17669933 original size:14 final size:13
Alignment explanation
Indices: 17669911--17669974 Score: 62
Period size: 15 Copynumber: 4.8 Consensus size: 13
17669901 AAAAATGAAA
17669911 AAAATTAAAAGAAAT
1 AAAA-TAAAA-AAAT
*
17669926 AAAAT-AAAACA-
1 AAAATAAAAAAAT
17669937 AAAA-AAAAAAAT
1 AAAATAAAAAAAT
17669949 AAAATAAAAAAAT
1 AAAATAAAAAAAT
17669962 CAAAAATAAAAAA
1 --AAAATAAAAAA
17669975 GAAAAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
11 9 0.21
12 6 0.14
13 11 0.26
14 1 0.02
15 15 0.36
ACGTcount: A:0.83, C:0.03, G:0.02, T:0.12
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:17669947 original size:13 final size:13
Alignment explanation
Indices: 17669926--17669986 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
17669916 TAAAAGAAAT
*
17669926 AAAATAAAACAAA
1 AAAAAAAAACAAA
*
17669939 AAAAAAAAATAAA
1 AAAAAAAAACAAA
*
17669952 ATAAAAAAATCAAA
1 A-AAAAAAAACAAA
* *
17669966 AATAAAAAAGAAA
1 AAAAAAAAACAAA
17669979 AAGAAAAA
1 AA-AAAAA
17669987 CCTACGATCG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
13 23 0.61
14 15 0.39
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.08
Consensus pattern (13 bp):
AAAAAAAAACAAA
Found at i:17669966 original size:23 final size:23
Alignment explanation
Indices: 17669902--17669980 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
17669892 TAATAAGCAA
* *
17669902 AAAATGAAAAAAATTAAAAGAAAT
1 AAAAT-AAAAAAATAAAAAAAAAT
17669926 AAAATAAAACAAA-AAAAAAAAAT
1 AAAATAAAA-AAATAAAAAAAAAT
* *
17669949 AAAATAAAAAAATCAAAAATAA-
1 AAAATAAAAAAATAAAAAAAAAT
*
17669971 AAAAGAAAAA
1 AAAATAAAAA
17669981 GAAAAACCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
22 12 0.25
23 28 0.58
24 8 0.17
ACGTcount: A:0.82, C:0.03, G:0.04, T:0.11
Consensus pattern (23 bp):
AAAATAAAAAAATAAAAAAAAAT
Found at i:17669979 original size:27 final size:26
Alignment explanation
Indices: 17669900--17669979 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 26
17669890 AATAATAAGC
*
17669900 AAAAAATGAAAAAAATTAAAAG-AAATA
1 AAAAAATCAAAAAAA--AAAAGAAAATA
* *
17669927 AAATAAAACAAAAAAAAAAAATAAAATA
1 AAA-AAATC-AAAAAAAAAAAGAAAATA
17669955 AAAAAATCAAAAATAAAAAAGAAAA
1 AAAAAATCAAAAA-AAAAAAGAAAA
17669980 AGAAAAACCT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 5 0.11
27 21 0.48
28 11 0.25
29 7 0.16
ACGTcount: A:0.82, C:0.03, G:0.04, T:0.11
Consensus pattern (26 bp):
AAAAAATCAAAAAAAAAAAGAAAATA
Found at i:17671745 original size:83 final size:83
Alignment explanation
Indices: 17671558--17671754 Score: 216
Period size: 83 Copynumber: 2.4 Consensus size: 83
17671548 TTTTACAAAC
* * * * * * * *
17671558 AAATTTAGCTTAAAAGACTTACGAATCTTGCCTAGAGGACTTAGAGATTATGTAGAAAAGTCTTA
1 AAATTCAGCTTAAAAGACTTACGAATCTTACCCAAAAGACTTAAAAATTATGTAG-AAAGCCTTA
*
17671623 CAAATCTTGACTCTAAAAT
65 CAAATCTTAACTCTAAAAT
* ** *
17671642 ATATTCAGCTTGGAAGACTTACGAATCTTACCCAAAAGACTTAAAAATTATGCTAG-AGGCCTTA
1 AAATTCAGCTTAAAAGACTTACGAATCTTACCCAAAAGACTTAAAAATTATG-TAGAAAGCCTTA
*
17671706 TAAATCTTAACTCTAAAAT
65 CAAATCTTAACTCTAAAAT
* * *
17671725 AAATTCAGCTTAAAATACTTATGAGTCTTA
1 AAATTCAGCTTAAAAGACTTACGAATCTTA
17671755 TTTGGAGAAC
Statistics
Matches: 92, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
83 47 0.51
84 42 0.46
85 3 0.03
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (83 bp):
AAATTCAGCTTAAAAGACTTACGAATCTTACCCAAAAGACTTAAAAATTATGTAGAAAGCCTTAC
AAATCTTAACTCTAAAAT
Found at i:17679543 original size:15 final size:15
Alignment explanation
Indices: 17679523--17679553 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17679513 GGAGTTTCAA
17679523 GATTTTGGAGTTTTG
1 GATTTTGGAGTTTTG
*
17679538 GATTTTGGGGTTTTG
1 GATTTTGGAGTTTTG
17679553 G
1 G
17679554 TTTGAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.39, T:0.52
Consensus pattern (15 bp):
GATTTTGGAGTTTTG
Found at i:17679617 original size:13 final size:13
Alignment explanation
Indices: 17679599--17679649 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
17679589 GTTTGGAAAG
17679599 TTTAGGGTTTTGA
1 TTTAGGGTTTTGA
*
17679612 TTTAGGGTTTGGGGA
1 TTTAGGGTTT--TGA
*
17679627 -TTAGGTTTTTGA
1 TTTAGGGTTTTGA
17679639 TTTTAGGGTTT
1 -TTTAGGGTTT
17679650 AAGGTTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
12 2 0.07
13 10 0.33
14 16 0.53
15 2 0.07
ACGTcount: A:0.14, C:0.00, G:0.33, T:0.53
Consensus pattern (13 bp):
TTTAGGGTTTTGA
Found at i:17679702 original size:43 final size:42
Alignment explanation
Indices: 17679655--17679778 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 42
17679645 GGTTTAAGGT
*
17679655 TTTAATTTTACGATTTGGAAGATTTAGGATTTGGATTTTAGGG
1 TTTAATTTTACGATTTGG-AGATTTAGGATTTGAATTTTAGGG
* * * * *
17679698 TTTAATTTTAGGATTTGGAGGTTTGGGGTTTTAATTTTAGGG
1 TTTAATTTTACGATTTGGAGATTTAGGATTTGAATTTTAGGG
* ** * *
17679740 TTTCAGTTTTA-GGGTTGTGAAATTTAGGGTTTGAATTTT
1 TTT-AATTTTACGATTTG-GAGATTTAGGATTTGAATTTT
17679779 TTAATTTTCC
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
42 26 0.39
43 40 0.61
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (42 bp):
TTTAATTTTACGATTTGGAGATTTAGGATTTGAATTTTAGGG
Found at i:17679742 original size:14 final size:14
Alignment explanation
Indices: 17679677--17679778 Score: 89
Period size: 14 Copynumber: 7.2 Consensus size: 14
17679667 ATTTGGAAGA
* *
17679677 TTTAGGATTTGGAT
1 TTTAGGGTTTGAAT
17679691 TTTAGGGTTT-AAT
1 TTTAGGGTTTGAAT
* **
17679704 TTTAGGATTTGGAGG
1 TTTAGGGTTT-GAAT
* *
17679719 TTTGGGGTTTTAAT
1 TTTAGGGTTTGAAT
* *
17679733 TTTAGGGTTTCAGT
1 TTTAGGGTTTGAAT
*
17679747 TTTAGGGTTGTGAAA
1 TTTAGGGTT-TGAAT
17679762 TTTAGGGTTTGAAT
1 TTTAGGGTTTGAAT
17679776 TTT
1 TTT
17679779 TTAATTTTCC
Statistics
Matches: 68, Mismatches: 17, Indels: 6
0.75 0.19 0.07
Matches are distributed among these distances:
13 11 0.16
14 37 0.54
15 20 0.29
ACGTcount: A:0.20, C:0.01, G:0.29, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTGAAT
Found at i:17679778 original size:29 final size:27
Alignment explanation
Indices: 17679676--17679778 Score: 80
Period size: 29 Copynumber: 3.7 Consensus size: 27
17679666 GATTTGGAAG
*
17679676 ATTTAGGATTTGGATTTTAGGGTTTAA
1 ATTTAGGATTTGAATTTTAGGGTTTAA
* ** *
17679703 TTTTAGGATTTGGAGGTTTGGGGTTTTAA
1 ATTTAGGATTT-GAATTTTAGGG-TTTAA
* * * *
17679732 TTTTAGGGTTTCAGTTTTAGGGTTGTGAA
1 ATTTAGGATTTGAATTTTAGGGTT-T-AA
*
17679761 ATTTAGGGTTTGAATTTT
1 ATTTAGGATTTGAATTTT
17679779 TTAATTTTCC
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
27 12 0.20
28 16 0.27
29 32 0.53
ACGTcount: A:0.20, C:0.01, G:0.29, T:0.50
Consensus pattern (27 bp):
ATTTAGGATTTGAATTTTAGGGTTTAA
Found at i:17679913 original size:3 final size:3
Alignment explanation
Indices: 17679907--17679979 Score: 75
Period size: 3 Copynumber: 25.3 Consensus size: 3
17679897 TTATGAAAAT
* *
17679907 TTA TTA TTA TTA TTA TTA TTA TTG TTA -AA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17679954 TGT- TTA TT- TTA TTTA TT- TTA TT- TTA T
1 T-TA TTA TTA TTA -TTA TTA TTA TTA TTA T
17679980 AATTCTCCAA
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
2 8 0.14
3 47 0.80
4 4 0.07
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17680103 original size:3 final size:3
Alignment explanation
Indices: 17680095--17680149 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
17680085 ATAATTTTTA
* *
17680095 TAT TAT TAT TAT TAT TAT TAT T-T TGTT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
17680140 TAAT TAT TAT
1 T-AT TAT TAT
17680150 AGAACAACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.85
4 5 0.11
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:17681152 original size:12 final size:12
Alignment explanation
Indices: 17681135--17681161 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
17681125 ATGTGAGAGG
17681135 GTGTCTGAAGAT
1 GTGTCTGAAGAT
17681147 GTGTCTGAAGAT
1 GTGTCTGAAGAT
17681159 GTG
1 GTG
17681162 CCCAAGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.37, T:0.33
Consensus pattern (12 bp):
GTGTCTGAAGAT
Found at i:17681512 original size:20 final size:20
Alignment explanation
Indices: 17681489--17681526 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
17681479 TTTTTTATTA
17681489 TTTTTTTCC-TTTTATTTTC
1 TTTTTTTCCTTTTTATTTTC
17681508 TTTTTTTCCTTTTTATTTT
1 TTTTTTTCCTTTTTATTTT
17681527 AATATTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTTCCTTTTTATTTTC
Found at i:17681882 original size:37 final size:37
Alignment explanation
Indices: 17681813--17681915 Score: 116
Period size: 37 Copynumber: 2.8 Consensus size: 37
17681803 GCGAGTCGAG
* * *** *
17681813 AAATAAAGAATCGATTTGGATAACAGCACAAGTTAAG
1 AAATAAAGAATTGATTGGGATAACATTGCAAGTTAAA
* *
17681850 GAATAAAGAATTAATTGGGATAACATTGCAAGTTAAA
1 AAATAAAGAATTGATTGGGATAACATTGCAAGTTAAA
* *
17681887 AAATAAGGAATTGATTGGGACAACATTGC
1 AAATAAAGAATTGATTGGGATAACATTGC
17681916 GATCGAAATT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.47, C:0.09, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATAAAGAATTGATTGGGATAACATTGCAAGTTAAA
Found at i:17681951 original size:22 final size:22
Alignment explanation
Indices: 17681921--17681985 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
17681911 ATTGCGATCG
*
17681921 AAATTATGCCCAGAGGTCTTAA
1 AAATTATGCCCAAAGGTCTTAA
*
17681943 AGATTATGCCCAAAGGTCTTAA
1 AAATTATGCCCAAAGGTCTTAA
*
17681965 AAATCATGCCCAAAGGTCTTA
1 AAATTATGCCCAAAGGTCTTA
17681986 TAGAATTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (22 bp):
AAATTATGCCCAAAGGTCTTAA
Found at i:17682062 original size:93 final size:93
Alignment explanation
Indices: 17681894--17682103 Score: 278
Period size: 93 Copynumber: 2.2 Consensus size: 93
17681884 AAAAAATAAG
* * *
17681894 GAATTGATTGGGACAACATTGCGATCGAAATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGG
1 GAATTGATTGGGACAACATCGC-ATCAAAATTATGCCCAAAGGTCTTAAAGATTATGCCCAAAGG
* *
17681959 TCTTAAAAATCATGC-CCAAAGGTCTTATA
65 TCCTAAAAATCATGCTCCAAA-ATCTTATA
* ** *
17681988 GAATTGATTGGGAGAACATCGCATCAAAATTATGCCCAAAGGTCTTAAAGATTATGCCTGAATGT
1 GAATTGATTGGGACAACATCGCATCAAAATTATGCCCAAAGGTCTTAAAGATTATGCCCAAAGGT
* *
17682053 CCTAGAAATCATGCTCGAAAATCTTATA
66 CCTAAAAATCATGCTCCAAAATCTTATA
* *
17682081 GAATCGATCGGGACAACATCGCA
1 GAATTGATTGGGACAACATCGCA
17682104 GGTCAAAAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
93 77 0.76
94 24 0.24
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (93 bp):
GAATTGATTGGGACAACATCGCATCAAAATTATGCCCAAAGGTCTTAAAGATTATGCCCAAAGGT
CCTAAAAATCATGCTCCAAAATCTTATA
Found at i:17682223 original size:110 final size:111
Alignment explanation
Indices: 17682080--17682283 Score: 268
Period size: 110 Copynumber: 1.8 Consensus size: 111
17682070 AAAATCTTAT
* * * * * *
17682080 AGAATCGATCGGGACAACATCGCAGGTCAAAAAATAAGGAATCAATCGGGACAATATCGTGAATC
1 AGAATCGATCGGAACAACATCGCAAGTCAAAAAATAAAGAATCAATCGGGAAAACACCGTGAATC
*
17682145 GAAATTATGCTCAGAGGTCTTAAA-AATCATGCTCGGAGGTTTTAC
66 GAAATTATGCCCAGAGGTCTTAAAGAATCATGCTCGGAGGTTTTAC
** * *
17682190 AGAATCGA-CTGGAACAACATCGCAAGTTGAAAAATAAAGAATCGATGGGGAAAACACCGTGAAT
1 AGAATCGATC-GGAACAACATCGCAAGTCAAAAAATAAAGAATCAATCGGGAAAACACCGTGAAT
* *
17682254 TGAAATTATGCCCGGAGGTCTTAAAGAATC
65 CGAAATTATGCCCAGAGGTCTTAAAGAATC
17682284 GACTGGATAA
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
109 1 0.01
110 74 0.94
111 4 0.05
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (111 bp):
AGAATCGATCGGAACAACATCGCAAGTCAAAAAATAAAGAATCAATCGGGAAAACACCGTGAATC
GAAATTATGCCCAGAGGTCTTAAAGAATCATGCTCGGAGGTTTTAC
Found at i:17682373 original size:22 final size:22
Alignment explanation
Indices: 17682343--17682415 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
17682333 CCGCGAATCC
*
17682343 AAATTATGCCCAGAGGTTTTAA
1 AAATTATGCCCAGAGGTCTTAA
* * *
17682365 AGATTATGCCCGGATGTCTTAA
1 AAATTATGCCCAGAGGTCTTAA
* *
17682387 AAATCATGTCCAGAGGTCTTACA
1 AAATTATGCCCAGAGGTCTTA-A
17682410 AAATTA
1 AAATTA
17682416 ACTGGGACAA
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 34 0.85
23 6 0.15
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (22 bp):
AAATTATGCCCAGAGGTCTTAA
Found at i:17682502 original size:22 final size:22
Alignment explanation
Indices: 17682474--17682524 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
17682464 ACCGCGAATC
17682474 GAAATTATGCCCAGAGGTCTTA
1 GAAATTATGCCCAGAGGTCTTA
**
17682496 GAAATTATGCCTGGAGGTCTTA
1 GAAATTATGCCCAGAGGTCTTA
17682518 GAGAATT
1 GA-AATT
17682525 GACTGGGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (22 bp):
GAAATTATGCCCAGAGGTCTTA
Found at i:17682730 original size:23 final size:22
Alignment explanation
Indices: 17682678--17682722 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
17682668 CCACAAATCG
17682678 AAAATTATGCTTGGAGGTCTTA
1 AAAATTATGCTTGGAGGTCTTA
*
17682700 AAAGATTATGTTTGGAGGTCTTA
1 AAA-ATTATGCTTGGAGGTCTTA
17682723 TAGAATTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (22 bp):
AAAATTATGCTTGGAGGTCTTA
Found at i:17684749 original size:24 final size:24
Alignment explanation
Indices: 17684722--17684772 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
17684712 TTGTGATGCC
17684722 CTATCTTGTTTTTCACTCAAGGTT
1 CTATCTTGTTTTTCACTCAAGGTT
*
17684746 CTATGTTGTTTTTCACTCAAGGTT
1 CTATCTTGTTTTTCACTCAAGGTT
17684770 CTA
1 CTA
17684773 ATGACGATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.49
Consensus pattern (24 bp):
CTATCTTGTTTTTCACTCAAGGTT
Found at i:17691421 original size:30 final size:31
Alignment explanation
Indices: 17691353--17691467 Score: 87
Period size: 30 Copynumber: 3.8 Consensus size: 31
17691343 GGTTTGGGGA
* * * * *
17691353 TTAGGTTTTTGATTTTAAGGTTT-AAAGGGT
1 TTAGGGTTTTAATTTTAAGATTTGGAAGGAT
* *
17691383 TTAAGGTTTTAATTTTATGATTTGGAA-GAT
1 TTAGGGTTTTAATTTTAAGATTTGGAAGGAT
* * *
17691413 TTAGGGTTTGAATTTTAAGGTTT--AAGGGGT
1 TTAGGGTTTTAATTTTAAGATTTGGAA-GGAT
*
17691443 TTAGGG-TTTAATTTTAGGATTTGGA
1 TTAGGGTTTTAATTTTAAGATTTGGA
17691468 GGTTTTGATT
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
28 2 0.03
29 13 0.20
30 47 0.72
31 3 0.05
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (31 bp):
TTAGGGTTTTAATTTTAAGATTTGGAAGGAT
Found at i:17691478 original size:22 final size:22
Alignment explanation
Indices: 17691453--17691495 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
17691443 TTAGGGTTTA
*
17691453 ATTTTAGGATTTGGAGGTTTTG
1 ATTTTAGGATTTAGAGGTTTTG
*
17691475 ATTTTAGGGTTTAGAGGTTTT
1 ATTTTAGGATTTAGAGGTTTT
17691496 AAATTTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (22 bp):
ATTTTAGGATTTAGAGGTTTTG
Found at i:17691485 original size:14 final size:14
Alignment explanation
Indices: 17691468--17691551 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
17691458 AGGATTTGGA
17691468 GGTTTTGATTTTAG
1 GGTTTTGATTTTAG
*
17691482 GGTTTAGAGGTTTTA-
1 GGTTTTGA--TTTTAG
**
17691497 AATTTTGATTTTAG
1 GGTTTTGATTTTAG
*
17691511 GG-TTTCAGTTTTAG
1 GGTTTTGA-TTTTAG
* *
17691525 GGTTATGAAATTTAG
1 GGTTTTG-ATTTTAG
*
17691540 GGTTTGGATTTT
1 GGTTTTGATTTT
17691552 TTAATTTTAA
Statistics
Matches: 51, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
13 9 0.18
14 19 0.37
15 17 0.33
16 6 0.12
ACGTcount: A:0.20, C:0.01, G:0.27, T:0.51
Consensus pattern (14 bp):
GGTTTTGATTTTAG
Found at i:17691678 original size:3 final size:3
Alignment explanation
Indices: 17691672--17691744 Score: 75
Period size: 3 Copynumber: 25.7 Consensus size: 3
17691662 TTATGAAAAT
* *
17691672 TTA TTA TTA TTA -TA TTA TTG TTA -AA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
17691718 TTA TTA TGT- TTT TTA TT- TTA TT- TTA TT
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
17691745 TTTTTATAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
2 8 0.14
3 50 0.85
4 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17693247 original size:11 final size:10
Alignment explanation
Indices: 17693231--17693290 Score: 50
Period size: 11 Copynumber: 5.8 Consensus size: 10
17693221 CTTTCTGCCA
17693231 CTTTTTTATTT
1 CTTTTTT-TTT
17693242 CTTTTTTTATT
1 CTTTTTTT-TT
* *
17693253 ATTTTTTTCT
1 CTTTTTTTTT
* *
17693263 CTTTTATTTC
1 CTTTTTTTTT
17693273 CTTTTTCTTTT
1 CTTTTT-TTTT
17693284 -TTTTTTT
1 CTTTTTTT
17693291 AGTTTTTTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
9 2 0.05
10 18 0.46
11 19 0.49
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.82
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:17693269 original size:30 final size:30
Alignment explanation
Indices: 17693234--17693290 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
17693224 TCTGCCACTT
17693234 TTTTATTT-CTTTTT-TTATTATTTTTTTCTC
1 TTTTATTTCCTTTTTCTT-TT-TTTTTTTCTC
17693264 TTTTATTTCCTTTTTCTTTTTTTTTTT
1 TTTTATTTCCTTTTTCTTTTTTTTTTT
17693291 AGTTTTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
30 15 0.60
31 8 0.32
32 2 0.08
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (30 bp):
TTTTATTTCCTTTTTCTTTTTTTTTTTCTC
Done.