Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18142777
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 63000 characters in sequence are not A, C, G, or T
File 84 of 84
Found at i:17998675 original size:28 final size:28
Alignment explanation
Indices: 17998615--17998675 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
17998605 CCCTAGTAAG
* *
17998615 TTTTTTCTTTCTTTTTTCCTTTTTTTCC
1 TTTTTTCTTTCTTTTTTCCTTTTATACC
* *
17998643 CTTTTTCTTTCTTTTTT-GTGTTTATACC
1 TTTTTTCTTTCTTTTTTCCT-TTTATACC
17998671 TTTTT
1 TTTTT
17998676 AATTAAATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.75
Consensus pattern (28 bp):
TTTTTTCTTTCTTTTTTCCTTTTATACC
Found at i:17999606 original size:32 final size:38
Alignment explanation
Indices: 17999564--17999635 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 38
17999554 CCCAAATATA
17999564 TATAGTTATAT-T-T-TTA-ATTAATT-AATTATT-TT
1 TATAGTTATATATGTATTATATTAATTAAATTATTATT
*
17999596 TATATTTATATATGTATTATATTAATTAAATTATTATT
1 TATAGTTATATATGTATTATATTAATTAAATTATTATT
17999634 TA
1 TA
17999636 ATATCTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 10 0.30
33 1 0.03
34 1 0.03
35 3 0.09
36 7 0.21
37 7 0.21
38 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (38 bp):
TATAGTTATATATGTATTATATTAATTAAATTATTATT
Found at i:17999902 original size:19 final size:18
Alignment explanation
Indices: 17999875--17999910 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
17999865 CCCAATTTGG
17999875 TTTTTTTTTCTTTCATTT
1 TTTTTTTTTCTTTCATTT
*
17999893 TTTTTGTTTTTTTTCATT
1 TTTTT-TTTTCTTTCATT
17999911 AGTTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.06, C:0.08, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTCTTTCATTT
Found at i:18001527 original size:22 final size:22
Alignment explanation
Indices: 18001493--18001536 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
18001483 ATCCAATAAA
* *
18001493 TTTGTTTCCTTTTCTCTTTTAT
1 TTTGTTTCATTTTATCTTTTAT
* *
18001515 TTTGTTTTATTTTATTTTTTAT
1 TTTGTTTCATTTTATCTTTTAT
18001537 ATACTTTTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.09, G:0.05, T:0.77
Consensus pattern (22 bp):
TTTGTTTCATTTTATCTTTTAT
Found at i:18001818 original size:10 final size:10
Alignment explanation
Indices: 18001803--18001841 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
18001793 AAAAATATTG
*
18001803 TTATTTATAA
1 TTATTTTTAA
*
18001813 TTATTTTTAT
1 TTATTTTTAA
18001823 TTATTTTTAA
1 TTATTTTTAA
18001833 TATATTTTT
1 T-TATTTTT
18001842 TATATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:18001828 original size:20 final size:21
Alignment explanation
Indices: 18001803--18001853 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
18001793 AAAAATATTG
18001803 TTATTTATAAT-TATTTTTAT
1 TTATTTATAATATATTTTTAT
*
18001823 TTATTTTTAATATATTTTT-T
1 TTATTTATAATATATTTTTAT
*
18001843 ATATTT-TAATA
1 TTATTTATAATA
18001854 ATCATTATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 5 0.18
20 16 0.57
21 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
TTATTTATAATATATTTTTAT
Found at i:18002211 original size:29 final size:29
Alignment explanation
Indices: 18002167--18002234 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
18002157 TAAAAGTGAT
* *
18002167 ACGAATAATATGGATATATATGAATAAAC
1 ACGACTAATATAGATATATATGAATAAAC
* *
18002196 ACGACTAATATAGATATATATGAATAGAT
1 ACGACTAATATAGATATATATGAATAAAC
18002225 ACGACTAATA
1 ACGACTAATA
18002235 CGAATATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (29 bp):
ACGACTAATATAGATATATATGAATAAAC
Found at i:18002241 original size:29 final size:28
Alignment explanation
Indices: 18002164--18002245 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 28
18002154 ATTTAAAAGT
* *
18002164 GATACGAATAATATGGATATATATGAATA
1 GATACGACTAATA-GAATATATATGAATA
* * *
18002193 AACACGACTAATATAGATATATATGAATA
1 GATACGACTAATAGA-ATATATATGAATA
18002222 GATACGACTAATACGAATATATAT
1 GATACGACTAATA-GAATATATAT
18002246 AAAAATACGA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 42 0.98
30 1 0.02
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (28 bp):
GATACGACTAATAGAATATATATGAATA
Found at i:18002515 original size:11 final size:11
Alignment explanation
Indices: 18002499--18002524 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18002489 AGACTAATAT
18002499 TTATATTTATA
1 TTATATTTATA
18002510 TTATATTTATA
1 TTATATTTATA
18002521 TTAT
1 TTAT
18002525 TAATATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTTATA
Found at i:18002705 original size:9 final size:9
Alignment explanation
Indices: 18002693--18002723 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
18002683 AAAAAATATT
18002693 TTAAACGTA
1 TTAAACGTA
*
18002702 TTAAACATA
1 TTAAACGTA
18002711 TTAAACGTA
1 TTAAACGTA
18002720 TTAA
1 TTAA
18002724 TCATGTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (9 bp):
TTAAACGTA
Found at i:18002714 original size:18 final size:18
Alignment explanation
Indices: 18002693--18002736 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
18002683 AAAAAATATT
18002693 TTAAACGTATTAAACATA
1 TTAAACGTATTAAACATA
* *
18002711 TTAAACGTATTAATCATG
1 TTAAACGTATTAAACATA
18002729 TTAAACGT
1 TTAAACGT
18002737 GCATTGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (18 bp):
TTAAACGTATTAAACATA
Found at i:18004902 original size:2 final size:2
Alignment explanation
Indices: 18004895--18004920 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
18004885 TTTTATACCT
18004895 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
18004921 AGTCACTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:18012343 original size:9 final size:8
Alignment explanation
Indices: 18012329--18012354 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
18012319 TCTTTCTTTC
18012329 TTTTTTTA
1 TTTTTTTA
18012337 TTTTTTTA
1 TTTTTTTA
18012345 TTTTTTTA
1 TTTTTTTA
18012353 TT
1 TT
18012355 ATGAAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTA
Found at i:18013298 original size:2 final size:2
Alignment explanation
Indices: 18013291--18013322 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
18013281 GAATTTGATC
18013291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18013323 TACAACCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18018160 original size:30 final size:29
Alignment explanation
Indices: 18018125--18018195 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
18018115 ACATTGTCTT
18018125 TATATTTATAATATTTT-ATAATTCTATACA
1 TATATTTATAATATTTTAATAATT-TAT-CA
* *
18018155 TATATTTTTAAATATTTTAATTATTTATCA
1 TATATTTAT-AATATTTTAATAATTTATCA
*
18018185 TATTTTTATAA
1 TATATTTATAA
18018196 CAATAGCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 2 0.06
30 17 0.49
31 11 0.31
32 5 0.14
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (29 bp):
TATATTTATAATATTTTAATAATTTATCA
Found at i:18028757 original size:22 final size:22
Alignment explanation
Indices: 18028732--18028775 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
18028722 AGTAATCGCG
18028732 ACTCGATCTTAAAGTTTGTCAA
1 ACTCGATCTTAAAGTTTGTCAA
*
18028754 ACTCGATCTTGAAGTTTGTCAA
1 ACTCGATCTTAAAGTTTGTCAA
18028776 GCTTTTTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (22 bp):
ACTCGATCTTAAAGTTTGTCAA
Found at i:18033638 original size:695 final size:696
Alignment explanation
Indices: 18032106--18033755 Score: 2487
Period size: 695 Copynumber: 2.4 Consensus size: 696
18032096 AAACACCGTC
* * * *
18032106 AATATAGAAGGCGTTTATTCCAGAAAATACCTTTTCTAATTCATTTAAACTT-GTACTTAATTAC
1 AATATTGAAGGCGTTTATTCAAAAAAATACCTTTACTAATTCATTTAAACTTAGTACTTAATTAC
* *
18032170 TGAAGCCATTTGTTAAT-A-ACACGCCTTCAATAA-TTTCACTCTAAAAAATATTTTAAAATTAT
66 TGAAGGCATTTGTTAATAACACACGCCTTCAATAATTTTC-CTCTAAAAAATATTTTAGAATTAT
* * * ** *
18032232 TAAAGGTATTTTCTACTGACAAATGCCTTCAATAATTCCTTTTAAATTATCTTCAAAAAAATTGA
130 TAAAGGCATCTTCTACTGACAAACGCCTTCAATAATTCCTTTTAAAAAATCTTCATAAAAATTGA
* *
18032297 AGGCATTTCTTGATTATAAATGCCTTTAATAA-TTTCATTATAGAATTTGTTGGGATTAGTAAAT
195 AGGCATTTCTTGATTATAAACGCCTTCAATAATTTTC-TTATAGAATTTGTTGGGATTAGTAAAT
* * * * * *
18032361 GCGTCTTTGACTGTTAAACGCCTTCAATAATGTCCTTCTATTGAAGGTTTTTATTCTAGAAAAAT
259 GCGTATTTGACTGTTAAACACCTTCAATAATGTCCTTCTATTAAAGGCTTTTATTCCAAAAAAAT
* * * * *
18032426 GCATTGACTAATTCGTAGAAAATTTTAAAATCAATTTATTGAAGTCGTCTTCTACTGCAAAATAC
324 ACATTGACTAATTCGTAAAAAATTTTAAAATCAATTTATTGAAGGCATCTTCTACTGCAAAACAC
*
18032491 CTTCAATATTTCATTGCTCAAAATAGTGAAGCCATTTATTGTAAAAAAATGCCATTACTAGAAGC
389 CTTCAATATTCCATTGCTCAAAATAGTGAAGCCATTTATTGTAAAAAAATGCCATTACTAGAAGC
* * * *
18032556 TTTTATTTTATTTTAATTACAAACGCATTGAACAATTTCTAATTAAAATTATTGGTATTAGTAAT
454 TTTTATTTTATTTTAATAACAAACGCATTGAACAATTTCCAATTAAAATTATTAGCATTAGTAAT
* *
18032621 GGCATCTTCTAGCGAAAAATGCCTTCAATAATCGAGAACTTAAAATTTGTAACGGTTAGTGAAGG
519 GGCATCTTCTAGCGAAAAATGCCTTCAATAATCAAGAACTTAAAATTTATAACGGTTAGTGAAGG
* * *
18032686 TGTTTATTCCATAACACCGTCTTCAATGATTTTCCTCTAAGAAATTTAGGTAGTACTAAAAGCAT
584 TGTTTATTCCATAACACCGCCTTCAATAATTTCCCTCTAAGAAATTTAGGTAGTACTAAAAGCAT
*
18032751 CTTCTACTGACAAAGGCCTTCAATAATTTCATTTAAATTATCTACATA
649 CTTCTACTGACAAAGACCTTCAATAATTTCATTTAAATTATCTACATA
* * * *
18032799 AATATTGAAGGCATTTACTCCAGAAAAATGCCTTTAC-AATTCATTTAAACTTAGTACTTAATTA
1 AATATTGAAGGCGTTTA-TTCAAAAAAATACCTTTACTAATTCATTTAAACTTAGTACTTAATTA
** *
18032863 CTGAAGGTGTTTGTTAATAACACACGCCTTCAATAATTTCCCTCTAAAAAATATTTTAGAATTAT
65 CTGAAGGCATTTGTTAATAACACACGCCTTCAATAATTTTCCTCTAAAAAATATTTTAGAATTAT
18032928 TAAAGGCATCTTCTACTGACAAACGCCTTCAATAATTCCTTTTAAAAAATCTTCATAAAAATTGA
130 TAAAGGCATCTTCTACTGACAAACGCCTTCAATAATTCCTTTTAAAAAATCTTCATAAAAATTGA
* * *
18032993 AGGCATTTCTTGATTATAAACGCCTTCAATAATTTTCTTATAAAATTTGTTAGGATTTGTAAA-G
195 AGGCATTTCTTGATTATAAACGCCTTCAATAATTTTCTTATAGAATTTGTTGGGATTAGTAAATG
18033057 ACGTATTTGACTGTTAAACACCTTCAATAATGTCCTTCTATTAAAGGCTTTTATTCCAAAAAAAT
260 -CGTATTTGACTGTTAAACACCTTCAATAATGTCCTTCTATTAAAGGCTTTTATTCCAAAAAAAT
* * * * *
18033122 ACCTTGACTAATTCGTAAAAAAATTTT-GAATCAATTTATTGAAGGCATTTTCTGCTGTAAAACA
324 ACATTGACTAATTCGT-AAAAAATTTTAAAATCAATTTATTGAAGGCATCTTCTACTGCAAAACA
* *
18033186 CCTTCAATATTCCATTGCTCAAAATAGTGAAGGCATTTATTGT-AGAAAATGCCATTACTAGAAG
388 CCTTCAATATTCCATTGCTCAAAATAGTGAAGCCATTTATTGTAAAAAAATGCCATTACTAGAAG
*
18033250 CTTTTGTTTTATTTTAATAACAAACGCATTGAACAATTTCCAATTAAAATTATTAGCATTAGTAA
453 CTTTTATTTTATTTTAATAACAAACGCATTGAACAATTTCCAATTAAAATTATTAGCATTAGTAA
**
18033315 TGGTGTCTTCTAGCGAAAAATGCCTTCAATAATCAAGAA-TTAAAATTTATAACGGTTAGTGAAG
518 TGGCATCTTCTAGCGAAAAATGCCTTCAATAATCAAGAACTTAAAATTTATAACGGTTAGTGAAG
* **
18033379 GTGTTTATTCCATAACACCGCCTTCAATAATTTCCCTCTAAGAAATTT-TGTAGTACTAAAAGTG
583 GTGTTTATTCCATAACACCGCCTTCAATAATTTCCCTCTAAGAAATTTAGGTAGTACTAAAAGCA
*
18033443 TCTTCTACTGACAAAGACCTTCCATAA-TTCTATTTAAATTATCTACATA
648 TCTTCTACTGACAAAGACCTTCAATAATTTC-ATTTAAATTATCTACATA
18033492 AATATTGAAGGCGTTTATTCTAAAAAAAATACCTTTACTAATTCATTTAAACTTAGTACTTAATT
1 AATATTGAAGGCGTTTATTC--AAAAAAATACCTTTACTAATTCATTTAAACTTAGTACTTAATT
* *
18033557 ACTGAAGGCATTTGTTAATAACACACGCCTTCAATAATTTTCCTCAAAAAAATATTTTGGAATTA
64 ACTGAAGGCATTTGTTAATAACACACGCCTTCAATAATTTTCCTCTAAAAAATATTTTAGAATTA
* * * * *
18033622 TTAACGACGTCTTCTACTAACAAACGCCTTCAATAATTCTTTTTAAAAAATCTTCATAAAAATTG
129 TTAAAGGCATCTTCTACTGACAAACGCCTTCAATAATTCCTTTTAAAAAATCTTCATAAAAATTG
* * * * * *
18033687 AAAGCGTTTCTTGATTATAAACGCCTTCAATAATTTCCTTGTAGAATTTGTTGGGATTATTAAAG
194 AAGGCATTTCTTGATTATAAACGCCTTCAATAATTTTCTTATAGAATTTGTTGGGATTAGTAAAT
18033752 GCGT
259 GCGT
18033756 TTTCTATAAT
Statistics
Matches: 862, Mismatches: 82, Indels: 24
0.89 0.08 0.02
Matches are distributed among these distances:
692 5 0.01
693 102 0.12
694 122 0.14
695 323 0.37
696 294 0.34
697 16 0.02
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (696 bp):
AATATTGAAGGCGTTTATTCAAAAAAATACCTTTACTAATTCATTTAAACTTAGTACTTAATTAC
TGAAGGCATTTGTTAATAACACACGCCTTCAATAATTTTCCTCTAAAAAATATTTTAGAATTATT
AAAGGCATCTTCTACTGACAAACGCCTTCAATAATTCCTTTTAAAAAATCTTCATAAAAATTGAA
GGCATTTCTTGATTATAAACGCCTTCAATAATTTTCTTATAGAATTTGTTGGGATTAGTAAATGC
GTATTTGACTGTTAAACACCTTCAATAATGTCCTTCTATTAAAGGCTTTTATTCCAAAAAAATAC
ATTGACTAATTCGTAAAAAATTTTAAAATCAATTTATTGAAGGCATCTTCTACTGCAAAACACCT
TCAATATTCCATTGCTCAAAATAGTGAAGCCATTTATTGTAAAAAAATGCCATTACTAGAAGCTT
TTATTTTATTTTAATAACAAACGCATTGAACAATTTCCAATTAAAATTATTAGCATTAGTAATGG
CATCTTCTAGCGAAAAATGCCTTCAATAATCAAGAACTTAAAATTTATAACGGTTAGTGAAGGTG
TTTATTCCATAACACCGCCTTCAATAATTTCCCTCTAAGAAATTTAGGTAGTACTAAAAGCATCT
TCTACTGACAAAGACCTTCAATAATTTCATTTAAATTATCTACATA
Found at i:18034621 original size:28 final size:28
Alignment explanation
Indices: 18034589--18034642 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
18034579 GCTGAATGGT
* *
18034589 TTGCTGAACCTTGTTGTATGATATTGTA
1 TTGCTGAACCGTATTGTATGATATTGTA
**
18034617 TTGCTGAATGGTATTGTATGATATTG
1 TTGCTGAACCGTATTGTATGATATTG
18034643 AGGGGTTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (28 bp):
TTGCTGAACCGTATTGTATGATATTGTA
Found at i:18034713 original size:79 final size:80
Alignment explanation
Indices: 18034535--18034755 Score: 313
Period size: 79 Copynumber: 2.8 Consensus size: 80
18034525 GTCTAATTTT
18034535 TTTTGCTGAATGGTATTGTATGATATTTGA-GGGCTGAATCGTATGCTGAATGGTTTGCTGAACC
1 TTTTGCTGAATGGTATTGTATGATA-TTGAGGGGCTGAATCGTATGCTGAATGGTTTGCTGAACC
*
18034599 TTGTTGTATGATATTG
65 TTATTGTATGATATTG
* * * *
18034615 TATTGCTGAATGGTATTGTATGATATTGAGGGGTTGAATCATATGCTGAATGATTTGCTGAACCT
1 TTTTGCTGAATGGTATTGTATGATATTGAGGGGCTGAATCGTATGCTGAATGGTTTGCTGAACCT
*
18034680 TATT-TTTGATATTG
66 TATTGTATGATATTG
* * * *
18034694 TTTTGTTGAATGGTTTTGTATGATATT-AGGGGCCTGAATTGTATGCTGAATGGTTTGTTGAA
1 TTTTGCTGAATGGTATTGTATGATATTGAGGGG-CTGAATCGTATGCTGAATGGTTTGCTGAA
18034756 TGATCTTTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
78 5 0.04
79 61 0.49
80 59 0.47
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (80 bp):
TTTTGCTGAATGGTATTGTATGATATTGAGGGGCTGAATCGTATGCTGAATGGTTTGCTGAACCT
TATTGTATGATATTG
Found at i:18034767 original size:79 final size:78
Alignment explanation
Indices: 18034535--18034755 Score: 307
Period size: 80 Copynumber: 2.8 Consensus size: 78
18034525 GTCTAATTTT
*
18034535 TTTTGCTGAATGGTATTGTATGATATTTGAGGGCTGAATCGTATGCTGAATGGTTTGCTGAACCT
1 TTTTGCTGAATGGTATTGTATGATATTAG-GGGCTGAATCGTATGCTGAATGGTTTGCTGAACCT
* *
18034600 TGTTGTATGATATTG
65 TATT-TTTGATATTG
* * * *
18034615 TATTGCTGAATGGTATTGTATGATATTGAGGGGTTGAATCATATGCTGAATGATTTGCTGAACCT
1 TTTTGCTGAATGGTATTGTATGATATT-AGGGGCTGAATCGTATGCTGAATGGTTTGCTGAACCT
18034680 TATTTTTGATATTG
65 TATTTTTGATATTG
* * * *
18034694 TTTTGTTGAATGGTTTTGTATGATATTAGGGGCCTGAATTGTATGCTGAATGGTTTGTTGAA
1 TTTTGCTGAATGGTATTGTATGATATTAGGGG-CTGAATCGTATGCTGAATGGTTTGCTGAA
18034756 TGATCTTTTT
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
78 5 0.04
79 57 0.46
80 61 0.49
81 1 0.01
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (78 bp):
TTTTGCTGAATGGTATTGTATGATATTAGGGGCTGAATCGTATGCTGAATGGTTTGCTGAACCTT
ATTTTTGATATTG
Found at i:18042268 original size:26 final size:27
Alignment explanation
Indices: 18042230--18042284 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
18042220 TTTTTTGATT
* * *
18042230 TAATAATTTTAATCTAATC-CTAATTC
1 TAATAAATATAATCTAACCGCTAATTC
18042256 TAATAAATATAATCTAACCGCTAATTC
1 TAATAAATATAATCTAACCGCTAATTC
18042283 TA
1 TA
18042285 TCCCTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (27 bp):
TAATAAATATAATCTAACCGCTAATTC
Found at i:18045458 original size:2 final size:2
Alignment explanation
Indices: 18045453--18045479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18045443 TTTAATATAT
18045453 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
18045480 TCTTTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:18045527 original size:16 final size:16
Alignment explanation
Indices: 18045506--18045550 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
18045496 AAACTATTTT
*
18045506 TATATTTACATTATGC
1 TATATTTACATTATGA
* *
18045522 TATA-TTACATTCTTA
1 TATATTTACATTATGA
18045537 TATATTTACATTAT
1 TATATTTACATTAT
18045551 ATGTGCTGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (16 bp):
TATATTTACATTATGA
Found at i:18051575 original size:24 final size:23
Alignment explanation
Indices: 18051518--18051575 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
18051508 TATTTATAAA
18051518 AATATTATTT-TT-TATATAAATT
1 AATATT-TTTATTATATATAAATT
* *
18051540 -ACATTTTAATTATATATAAATAT
1 AATATTTTTATTATATATAAAT-T
18051563 AATATTTTTATTA
1 AATATTTTTATTA
18051576 AATTAATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 2 0.07
21 6 0.21
22 9 0.32
23 1 0.04
24 10 0.36
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
AATATTTTTATTATATATAAATT
Found at i:18051593 original size:13 final size:13
Alignment explanation
Indices: 18051571--18051604 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
18051561 ATAATATTTT
*
18051571 TATTAAATTAATA
1 TATTAAATTAAGA
*
18051584 TATTACATTAAGA
1 TATTAAATTAAGA
18051597 TATTAAAT
1 TATTAAAT
18051605 AATAATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (13 bp):
TATTAAATTAAGA
Found at i:18052120 original size:17 final size:16
Alignment explanation
Indices: 18052091--18052124 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
18052081 CTAAAAAATT
18052091 TTAAATAATAATTATA
1 TTAAATAATAATTATA
18052107 TTAAATATATAATTATA
1 TTAAATA-ATAATTATA
18052124 T
1 T
18052125 ATTGTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAATAATAATTATA
Found at i:18052137 original size:19 final size:20
Alignment explanation
Indices: 18052092--18052139 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
18052082 TAAAAAATTT
*
18052092 TAAATAATAATTATATTAAA
1 TAAATAATTATTATATTAAA
* **
18052112 TATATAATTA-TATATTGTA
1 TAAATAATTATTATATTAAA
18052131 TAAATAATT
1 TAAATAATT
18052140 GAAATAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
TAAATAATTATTATATTAAA
Found at i:18055600 original size:3 final size:3
Alignment explanation
Indices: 18055592--18055637 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
18055582 TTGATGTGAA
18055592 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
18055638 GCTATGAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:18055907 original size:13 final size:13
Alignment explanation
Indices: 18055863--18055909 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
18055853 TTTTATCAAA
18055863 TTTTATT-TATTT
1 TTTTATTATATTT
*
18055875 TTTTCATTATTGTTT
1 TTTT-ATTA-TATTT
18055890 TTTTATTATATTT
1 TTTTATTATATTT
*
18055903 CTTTATT
1 TTTTATT
18055910 CTTGTTCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 4 0.14
13 13 0.45
14 4 0.14
15 8 0.28
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTATTATATTT
Found at i:18055914 original size:27 final size:27
Alignment explanation
Indices: 18055863--18055915 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
18055853 TTTTATCAAA
*
18055863 TTTTATTTATTTTTTTCATTATTGTTT
1 TTTTATTTATTTCTTTCATTATTGTTT
*
18055890 TTTTATTATATTTCTTT-ATTCTTGTT
1 TTTTATT-TATTTCTTTCATTATTGTT
18055916 CATTAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (27 bp):
TTTTATTTATTTCTTTCATTATTGTTT
Found at i:18059723 original size:143 final size:143
Alignment explanation
Indices: 18059460--18059724 Score: 311
Period size: 143 Copynumber: 1.9 Consensus size: 143
18059450 CAGATCATGG
** * *
18059460 TTTTATATTATTTCATCATTTTTAGTGCATTAAAAACCTTGGTCTCATCTCAAAAAGTGTAAAAT
1 TTTTATATTATTTCATCATTTTTAGTGCATTAAAAACCTTAATCACACCTCAAAAAGTGTAAAAT
* * * * * * *
18059525 TACTAAAATATCCTCATGAATATTTTCGTAATTTGACCTTCTTGATGTTGATTTTTTACGAAATA
66 TACTAAAATATCATCAAGAATATTTTCGTAATTTGACATTCCTAAGGTAGATTTTTTACGAAATA
18059590 CTCCAAATTATGC
131 CTCCAAATTATGC
* * * * *
18059603 TTTTATATTATTTGATGATTTTTTA-TGCATTAAAAACTTTAATCACACCTCAAAAGGTGTGAAA
1 TTTTATATTATTTCATCA-TTTTTAGTGCATTAAAAACCTTAATCACACCTCAAAAAGTGTAAAA
* ** *
18059667 TTACTAAAATATCATTAAGGGTAATTTT-GTAATTTGACATTCCTAAGGTA-AGTTTTTA
65 TTACTAAAATATCATCAAGAAT-ATTTTCGTAATTTGACATTCCTAAGGTAGATTTTTTA
18059725 GTAAAAACTT
Statistics
Matches: 100, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
142 7 0.07
143 82 0.82
144 11 0.11
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (143 bp):
TTTTATATTATTTCATCATTTTTAGTGCATTAAAAACCTTAATCACACCTCAAAAAGTGTAAAAT
TACTAAAATATCATCAAGAATATTTTCGTAATTTGACATTCCTAAGGTAGATTTTTTACGAAATA
CTCCAAATTATGC
Found at i:18061258 original size:26 final size:26
Alignment explanation
Indices: 18061229--18061286 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
18061219 CCTAAAATCA
* *
18061229 TAAACCACCATTCAAATCTTAAACCC
1 TAAACCACCATCCAAATCCTAAACCC
** *
18061255 TAAACCATTATCCAAATCCTAAATCC
1 TAAACCACCATCCAAATCCTAAACCC
18061281 TAAACC
1 TAAACC
18061287 TTAAAACCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (26 bp):
TAAACCACCATCCAAATCCTAAACCC
Found at i:18061331 original size:26 final size:26
Alignment explanation
Indices: 18061302--18061351 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18061292 ACCTAAATCT
18061302 TAAACCGT-AACCCTAAACTCTAAATA
1 TAAACCGTGAACCCTAAA-TCTAAATA
*
18061328 TAAACCTTGAACCCTAAATCTAAA
1 TAAACCGTGAACCCTAAATCTAAA
18061352 CCCTATACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.46, C:0.26, G:0.04, T:0.24
Consensus pattern (26 bp):
TAAACCGTGAACCCTAAATCTAAATA
Found at i:18061333 original size:20 final size:20
Alignment explanation
Indices: 18061310--18061356 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
18061300 CTTAAACCGT
*
18061310 AACCCTAAACTCTAAATATA
1 AACCCTAAACCCTAAATATA
* * *
18061330 AACCTTGAACCCTAAATCTA
1 AACCCTAAACCCTAAATATA
18061350 AACCCTA
1 AACCCTA
18061357 TACTAGAACC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (20 bp):
AACCCTAAACCCTAAATATA
Found at i:18061378 original size:7 final size:7
Alignment explanation
Indices: 18061272--18061459 Score: 71
Period size: 7 Copynumber: 28.7 Consensus size: 7
18061262 TTATCCAAAT
*
18061272 CCTAAAT
1 CCTAAAC
18061279 CCTAAAC
1 CCTAAAC
* *
18061286 CTTAAAA
1 CCTAAAC
*
18061293 CCTAAAT
1 CCTAAAC
*
18061300 CTTAAAC
1 CCTAAAC
*
18061307 CGT-AAC
1 CCTAAAC
18061313 CCTAAAC
1 CCTAAAC
*
18061320 TCTAAA-
1 CCTAAAC
**
18061326 TATAAAC
1 CCTAAAC
* *
18061333 CTTGAAC
1 CCTAAAC
18061340 CCTAAA-
1 CCTAAAC
*
18061346 TCTAAAC
1 CCTAAAC
*
18061353 CCTATA-
1 CCTAAAC
18061359 -CTAGAAC
1 CCTA-AAC
*
18061366 CTTAAAC
1 CCTAAAC
18061373 CCTAAA-
1 CCTAAAC
*
18061379 TC-AAAC
1 CCTAAAC
*
18061385 CCT-GA-
1 CCTAAAC
** *
18061390 CCTTTAG
1 CCTAAAC
18061397 CCTAAAC
1 CCTAAAC
*
18061404 CCCAAA-
1 CCTAAAC
18061410 -CT-AAC
1 CCTAAAC
* *
18061415 CTTAATC
1 CCTAAAC
18061422 CCTAAA-
1 CCTAAAC
18061428 CC-AAAC
1 CCTAAAC
18061434 CCTAAAC
1 CCTAAAC
18061441 CCTAAAC
1 CCTAAAC
18061448 CCTAAAC
1 CCTAAAC
18061455 CCTAA
1 CCTAA
18061460 CCTAGACCCC
Statistics
Matches: 131, Mismatches: 35, Indels: 30
0.67 0.18 0.15
Matches are distributed among these distances:
4 2 0.02
5 13 0.10
6 25 0.19
7 89 0.68
8 2 0.02
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.22
Consensus pattern (7 bp):
CCTAAAC
Found at i:18061468 original size:26 final size:25
Alignment explanation
Indices: 18061397--18061468 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 25
18061387 TGACCTTTAG
* *
18061397 CCTAAACCCCAAA-CTAACCTTAATC
1 CCTAAA-CCCAAACCTAACCCTAAAC
18061422 CCTAAA-CCAAACCCTAAACCCTAAAC
1 CCTAAACCCAAA-CCT-AACCCTAAAC
*
18061448 CCTAAACCCTAACCTAGACCC
1 CCTAAACCCAAACCTA-ACCC
18061469 CAAATAACCC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 5 0.13
25 9 0.23
26 21 0.54
27 4 0.10
ACGTcount: A:0.40, C:0.43, G:0.01, T:0.15
Consensus pattern (25 bp):
CCTAAACCCAAACCTAACCCTAAAC
Found at i:18065564 original size:18 final size:18
Alignment explanation
Indices: 18065541--18065581 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
18065531 GGAGGATTAG
18065541 GGGTAGCGATGATAGATA
1 GGGTAGCGATGATAGATA
18065559 GGGTAGCGATGATAGATA
1 GGGTAGCGATGATAGATA
18065577 GGGTA
1 GGGTA
18065582 CTATTATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.41, T:0.22
Consensus pattern (18 bp):
GGGTAGCGATGATAGATA
Found at i:18067369 original size:490 final size:492
Alignment explanation
Indices: 18065829--18068284 Score: 4616
Period size: 492 Copynumber: 5.0 Consensus size: 492
18065819 ACAAAAATGT
*
18065829 GCTAATAAATATTAGTAGATGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
18065894 TACA--T-TTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
18065956 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
18066021 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18066086 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
* *
18066151 GATTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCATTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18066216 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18066281 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
18066318 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
* * *
18066383 TACTTTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCATTATGTTGGCT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
* *
18066448 CTGCAGGGTTTTATATATAGTTATAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCAGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
*
18066513 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCCGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18066578 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
*
18066643 GATTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18066708 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
*
18066773 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGT
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
18066810 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
18066875 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
*
18066940 CTGCAGGGTTTTATATATTGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
18067005 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
*
18067070 TGATGCATATGATCTTTGTGTTTGTGTGTATTTACATGTTCAATA-TGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
18067134 GA-TTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18067198 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18067263 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
** *
18067300 GCTAATAAATATTAGTAGACGTTTATTGGGTTATCTAATGCACATGAATCTCAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
18067365 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
* *
18067430 CTGCAGGGTTTTATATATTGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTTGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
18067495 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18067560 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
18067625 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18067690 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18067755 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
* * *
18067792 GCTAATAAATATTACTAGACGTGCATTGGGTTATCTAACGCACATGAATCTTAAACTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
* *
18067857 TACATTTCTTCTTTTTCTTCACCACATCTTTCCCTCTTACGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
*
18067922 CTGCAGGGTTTTATATATAGTTATAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
* * * *
18067987 TCTGAAATTGTTTAATATGCATGGTTTTGTAGAGGTTGAGAGAAACTTATCTGCCAGATGCTTTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18068052 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
*
18068117 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGTGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18068182 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18068247 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
18068284 G
1 G
18068285 ACAGCTCTTT
Statistics
Matches: 1923, Mismatches: 39, Indels: 7
0.98 0.02 0.00
Matches are distributed among these distances:
489 67 0.03
490 463 0.24
491 43 0.02
492 1350 0.70
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (492 bp):
GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGA
Found at i:18067804 original size:982 final size:984
Alignment explanation
Indices: 18065829--18068284 Score: 4616
Period size: 982 Copynumber: 2.5 Consensus size: 984
18065819 ACAAAAATGT
*
18065829 GCTAATAAATATTAGTAGATGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
18065894 TACA--T-TTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
18065956 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
18066021 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18066086 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
* *
18066151 GATTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCATTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18066216 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18066281 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAGCTAATAAATATTAGTAGACGTGCATTG
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAGCTAATAAATATTAGTAGACGTGCATTG
* *
18066346 GGTTATCTAATGCACATGAATCTTAACCTTTTTGAGCTACTTTTCTTCTTTTTCTTCACCACATC
521 GGTTATCTAATGCACATGAATCTCAACCTTTTTGAGCTACATTTCTTCTTTTTCTTCACCACATC
18066411 TTCCCCTCTTATGTAATTTCTTCTCATTATGTTGGCTCTGCAGGGTTTTATATATAGTTATAAAC
586 TTCCCCTCTTATGTAATTTCTTCTCATTATGTTGGCTCTGCAGGGTTTTATATATAGTTATAAAC
18066476 CAAGTTGCTAGGCATTGGAATTCTTTTGTTCAGCAAATCTGAACTTGCTTAATATGCATGGTTTT
651 CAAGTTGCTAGGCATTGGAATTCTTTTGTTCAGCAAATCTGAACTTGCTTAATATGCATGGTTTT
*
18066541 GTAGAGGTTGAGAGGAACTTATCTGCCCGATGCTCTGTGATGCATATGATCTTTGTGTTTGTGTG
716 GTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTGTGATGCATATGATCTTTGTGTTTGTGTG
*
18066606 TATTTGCATGTTCAATACTGCAATAGTTGATTAGTGTGATTTTTAGTTCTTTTGATTATTTTGAA
781 TATTTGCATGTTCAATACTGCAATAGTTGATTAGTGTGAGTTTTAGTTCTTTTGATTATTTTGAA
18066671 TTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTATCTCTATTTCTCATTTTTCTTTGGGTTTT
846 TTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTATCTCTATTTCTCATTTTTCTTTGGGTTTT
18066736 ATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCACTGGAGAGGGACTTAAGCTAATTGTACGG
911 ATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCACTGGAGAGGGACTTAAGCTAATTGTACGG
*
18066801 GGATACTGT
976 GGATACTGA
18066810 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
18066875 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
*
18066940 CTGCAGGGTTTTATATATTGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
18067005 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
*
18067070 TGATGCATATGATCTTTGTGTTTGTGTGTATTTACATGTTCAATA-TGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
18067134 GA-TTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18067198 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
**
18067263 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAGCTAATAAATATTAGTAGACGTTTATTG
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAGCTAATAAATATTAGTAGACGTGCATTG
18067328 GGTTATCTAATGCACATGAATCTCAACCTTTTTGAGCTACATTTCTTCTTTTTCTTCACCACATC
521 GGTTATCTAATGCACATGAATCTCAACCTTTTTGAGCTACATTTCTTCTTTTTCTTCACCACATC
* * * *
18067393 TTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGTCTGCAGGGTTTTATATATTGTTCTAAAC
586 TTCCCCTCTTATGTAATTTCTTCTCATTATGTTGGCTCTGCAGGGTTTTATATATAGTTATAAAC
**
18067458 CAAGTTGCTAGGCATTGGAATTCTTTTGTTTGGCAAATCTGAACTTGCTTAATATGCATGGTTTT
651 CAAGTTGCTAGGCATTGGAATTCTTTTGTTCAGCAAATCTGAACTTGCTTAATATGCATGGTTTT
18067523 GTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTGTGATGCATATGATCTTTGTGTTTGTGTG
716 GTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTGTGATGCATATGATCTTTGTGTTTGTGTG
18067588 TATTTGCATGTTCAATACTGCAATAGTTGATTAGTGTGAGTTTTAGTTCTTTTGATTATTTTGAA
781 TATTTGCATGTTCAATACTGCAATAGTTGATTAGTGTGAGTTTTAGTTCTTTTGATTATTTTGAA
18067653 TTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTATCTCTATTTCTCATTTTTCTTTGGGTTTT
846 TTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTATCTCTATTTCTCATTTTTCTTTGGGTTTT
18067718 ATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCACTGGAGAGGGACTTAAGCTAATTGTACGG
911 ATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCACTGGAGAGGGACTTAAGCTAATTGTACGG
18067783 GGATACTGA
976 GGATACTGA
* * *
18067792 GCTAATAAATATTACTAGACGTGCATTGGGTTATCTAACGCACATGAATCTTAAACTTTTTGAGC
1 GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
* *
18067857 TACATTTCTTCTTTTTCTTCACCACATCTTTCCCTCTTACGTAATTTCTTCTCTTTATGTTGGGT
66 TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
*
18067922 CTGCAGGGTTTTATATATAGTTATAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
131 CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
* * * *
18067987 TCTGAAATTGTTTAATATGCATGGTTTTGTAGAGGTTGAGAGAAACTTATCTGCCAGATGCTTTG
196 TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
18068052 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
261 TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
*
18068117 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGTGTTAT
326 GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
18068182 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
391 CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
18068247 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAG
456 TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAG
18068285 ACAGCTCTTT
Statistics
Matches: 1440, Mismatches: 30, Indels: 7
0.97 0.02 0.00
Matches are distributed among these distances:
981 68 0.05
982 935 0.65
983 43 0.03
984 394 0.27
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (984 bp):
GCTAATAAATATTAGTAGACGTGCATTGGGTTATCTAATGCACATGAATCTTAACCTTTTTGAGC
TACATTTCTTCTTTTTCTTCACCACATCTTCCCCTCTTATGTAATTTCTTCTCTTTATGTTGGGT
CTGCAGGGTTTTATATATAGTTCTAAACCAAGTTGCTAGGCATTGGAATTCTTTTGTTCGGCAAA
TCTGAACTTGCTTAATATGCATGGTTTTGTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTG
TGATGCATATGATCTTTGTGTTTGTGTGTATTTGCATGTTCAATACTGCAATAGTTGATTAGTGT
GAGTTTTAGTTCTTTTGATTATTTTGAATTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTAT
CTCTATTTCTCATTTTTCTTTGGGTTTTATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCAC
TGGAGAGGGACTTAAGCTAATTGTACGGGGATACTGAGCTAATAAATATTAGTAGACGTGCATTG
GGTTATCTAATGCACATGAATCTCAACCTTTTTGAGCTACATTTCTTCTTTTTCTTCACCACATC
TTCCCCTCTTATGTAATTTCTTCTCATTATGTTGGCTCTGCAGGGTTTTATATATAGTTATAAAC
CAAGTTGCTAGGCATTGGAATTCTTTTGTTCAGCAAATCTGAACTTGCTTAATATGCATGGTTTT
GTAGAGGTTGAGAGGAACTTATCTGCCAGATGCTCTGTGATGCATATGATCTTTGTGTTTGTGTG
TATTTGCATGTTCAATACTGCAATAGTTGATTAGTGTGAGTTTTAGTTCTTTTGATTATTTTGAA
TTTATGCAAAGGGCTGTTTACCTACATTTTGCGTTATCTCTATTTCTCATTTTTCTTTGGGTTTT
ATAGGGGCATTTAATACTGTTTGGTTTCTTTTGTCACTGGAGAGGGACTTAAGCTAATTGTACGG
GGATACTGA
Found at i:18072897 original size:30 final size:30
Alignment explanation
Indices: 18072861--18072921 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
18072851 AAAATAAAAT
18072861 TTACATAGTCAGTGTTCAAATACAAGTTAA
1 TTACATAGTCAGTGTTCAAATACAAGTTAA
18072891 TTACATAGTCAGTGTTCAAATACAAGTTAA
1 TTACATAGTCAGTGTTCAAATACAAGTTAA
18072921 T
1 T
18072922 GCTCTTATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (30 bp):
TTACATAGTCAGTGTTCAAATACAAGTTAA
Found at i:18075194 original size:2 final size:2
Alignment explanation
Indices: 18075173--18075238 Score: 64
Period size: 2 Copynumber: 33.5 Consensus size: 2
18075163 CATGCATACC
* * * *
18075173 AT AT AT CT AT -T AT AT GT AT AT AT AT AT AT AT AT TT A- AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
18075213 TT CAT AT AT AT AT AT AT AT AT AT AT A
1 AT -AT AT AT AT AT AT AT AT AT AT AT A
18075239 GATGTAAAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
1 2 0.04
2 49 0.94
3 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:18089374 original size:6 final size:7
Alignment explanation
Indices: 18089358--18089391 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
18089348 ACATTTTTTC
18089358 AAAAATA
1 AAAAATA
18089365 AAAAATA
1 AAAAATA
18089372 AAAAAT-
1 AAAAATA
*
18089378 AAAAACA
1 AAAAATA
18089385 AAAAATA
1 AAAAATA
18089392 TTTTTTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:18089375 original size:14 final size:14
Alignment explanation
Indices: 18089358--18089391 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
18089348 ACATTTTTTC
*
18089358 AAAAATAAAAAATA
1 AAAAATAAAAAACA
18089372 AAAAAT-AAAAACA
1 AAAAATAAAAAACA
18089385 AAAAATA
1 AAAAATA
18089392 TTTTTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAATAAAAAACA
Found at i:18090404 original size:12 final size:12
Alignment explanation
Indices: 18090387--18090412 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18090377 TTTCTTTTCA
18090387 AATAAATAATAT
1 AATAAATAATAT
18090399 AATAAATAATAT
1 AATAAATAATAT
18090411 AA
1 AA
18090413 AAAGATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATAAATAATAT
Found at i:18090504 original size:24 final size:22
Alignment explanation
Indices: 18090477--18090524 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 22
18090467 TTCCAGGCAA
18090477 CTTTCTTTTCCTTTTATAATTTTT
1 CTTTCTTTTCCTTTTAT--TTTTT
*
18090501 CTTTCTTTTTCTTTTATTTTTT
1 CTTTCTTTTCCTTTTATTTTTT
18090523 CT
1 CT
18090525 CCTCCTCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.30
24 16 0.70
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (22 bp):
CTTTCTTTTCCTTTTATTTTTT
Found at i:18094024 original size:43 final size:43
Alignment explanation
Indices: 18093963--18094051 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 43
18093953 TTGTATTTAG
* ** *
18093963 GCTTTTCCGACCATTAGAGCGGCATATCTAACCTTCCAGATTA
1 GCTTTTCCCACCATTAGAGCAACACATCTAACCTTCCAGATTA
* *
18094006 GCTTTTCCCACTATTAGAGCAACACATCTAGCCTTCCAGATTA
1 GCTTTTCCCACCATTAGAGCAACACATCTAACCTTCCAGATTA
18094049 GCT
1 GCT
18094052 AACAGGAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (43 bp):
GCTTTTCCCACCATTAGAGCAACACATCTAACCTTCCAGATTA
Found at i:18096934 original size:40 final size:40
Alignment explanation
Indices: 18096795--18096955 Score: 119
Period size: 40 Copynumber: 3.9 Consensus size: 40
18096785 AAAATATTTT
* * * *
18096795 AAAATT-AATCATACCAAATTATTGGAGGACTTAAATCTC
1 AAAATTAAATCTTACCAAATTATTGAATGATTTAAATCTC
* * ***
18096834 AAAATTAAATCTTATCAAACTATTTAATT-AATTATTTAAAAAAAC
1 AAAATTAAATCTTA-CCAA--A-TT-ATTGAATGATTT-AAATCTC
* *
18096879 AAAATTTTTAATCTTACCAAATTATTGGATGATTTAAATCTC
1 AAAA--TTAAATCTTACCAAATTATTGAATGATTTAAATCTC
* *
18096921 AAAATTAAATCTTACCAAACTATTGAAAGATTTAA
1 AAAATTAAATCTTACCAAATTATTGAATGATTTAA
18096956 TTATTTTTAT
Statistics
Matches: 92, Mismatches: 20, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
39 6 0.07
40 33 0.36
41 3 0.03
42 11 0.12
43 9 0.10
44 7 0.08
45 11 0.12
46 3 0.03
47 9 0.10
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.36
Consensus pattern (40 bp):
AAAATTAAATCTTACCAAATTATTGAATGATTTAAATCTC
Found at i:18096980 original size:97 final size:98
Alignment explanation
Indices: 18096872--18097051 Score: 254
Period size: 97 Copynumber: 1.8 Consensus size: 98
18096862 TAATTATTTA
* * * *
18096872 AAAAAACAAAATTTTTAATCTTACCAAATTATTGGATGATTTAAATCTCAAAATTAAATCTT-AC
1 AAAAAACAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTCAAAATTAAATCTTAAC
18096936 CAAACTATTGAAAGATTTAATTATTTTTATAAG
66 CAAACTATTGAAAGATTTAATTATTTTTATAAG
* * * * *
18096969 AAAAAATAAAATTTTCAATCATACTAAACTATTGGAGGATTTAAATCTCAGAGTTAGATCTTACA
1 AAAAAACAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTCAAAATTAAATCTTA-A
*
18097034 CCAAACTATTGGAAGATT
65 CCAAACTATTGAAAGATT
18097052 GAACGATATT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
97 53 0.75
99 18 0.25
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (98 bp):
AAAAAACAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTCAAAATTAAATCTTAAC
CAAACTATTGAAAGATTTAATTATTTTTATAAG
Found at i:18098742 original size:130 final size:132
Alignment explanation
Indices: 18098537--18098780 Score: 332
Period size: 131 Copynumber: 1.9 Consensus size: 132
18098527 GGGGCAATCT
* * * * *
18098537 TTGCTCTCTTTATTTTTATATAGAATTAAAAATAAACCATTGTTTGATATACATGTAATTGTACA
1 TTGCTCTCTATATTTTCATATAGAATTAAAAATAAACCAATATTTGACATACATGTAATTGTACA
*
18098602 TACATTTTTTCATCCATGAAAAC-ATTTTTATATGTACATCATTTCATTGCACATAGTCTAATTG
66 TACATCTTTTCATCCATGAAAACAATTTTTATATGTACATCATTTCATTGCACATAGTCTAATTG
18098666 GA
131 GA
* *
18098668 TTGCTGTCTATATTTTGCATAT-GAATTAAAAATGAA-CAATATTTGACATACATGTAATTGTAC
1 TTGCTCTCTATATTTT-CATATAGAATTAAAAATAAACCAATATTTGACATACATGTAATTGTAC
* ** * * *
18098731 ATACGTCTTTTCATCCATTTAAACAATTTTTTTATTTACATCGTTTCATT
65 ATACATCTTTTCATCCATGAAAACAATTTTTATATGTACATCATTTCATT
18098781 TGTTAAGTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
130 44 0.45
131 49 0.51
132 4 0.04
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (132 bp):
TTGCTCTCTATATTTTCATATAGAATTAAAAATAAACCAATATTTGACATACATGTAATTGTACA
TACATCTTTTCATCCATGAAAACAATTTTTATATGTACATCATTTCATTGCACATAGTCTAATTG
GA
Found at i:18099579 original size:46 final size:46
Alignment explanation
Indices: 18099526--18099620 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
18099516 TGTTAGAATG
* *
18099526 TTACAAACACATCAATACCCAAGTTTTTTCATGAAACCCAAATCTT
1 TTACAAACACATCAATACCCAAGTTTCTTCATGAAACCCAAATCCT
* *
18099572 TTACAAACACATCAATACCTAAGTTTCTTCATGAAACCTAAATCCT
1 TTACAAACACATCAATACCCAAGTTTCTTCATGAAACCCAAATCCT
18099618 TTA
1 TTA
18099621 ATTCCTTTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (46 bp):
TTACAAACACATCAATACCCAAGTTTCTTCATGAAACCCAAATCCT
Found at i:18099950 original size:10 final size:10
Alignment explanation
Indices: 18099924--18099961 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
18099914 AGCATGAATT
*
18099924 ATGAACAAAA
1 ATGAAAAAAA
*
18099934 A-GGAAAAAA
1 ATGAAAAAAA
18099943 ATGAAAAAAA
1 ATGAAAAAAA
18099953 ATGAAAAAA
1 ATGAAAAAA
18099962 GAGTGTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.76, C:0.03, G:0.13, T:0.08
Consensus pattern (10 bp):
ATGAAAAAAA
Found at i:18099952 original size:19 final size:19
Alignment explanation
Indices: 18099924--18099961 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18099914 AGCATGAATT
*
18099924 ATGAACAAAAAGGAAAAAA
1 ATGAAAAAAAAGGAAAAAA
*
18099943 ATGAAAAAAAATGAAAAAA
1 ATGAAAAAAAAGGAAAAAA
18099962 GAGTGTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.13, T:0.08
Consensus pattern (19 bp):
ATGAAAAAAAAGGAAAAAA
Found at i:18101654 original size:71 final size:70
Alignment explanation
Indices: 18101534--18101685 Score: 175
Period size: 71 Copynumber: 2.2 Consensus size: 70
18101524 CATTTGAATA
* * * **
18101534 ATGCATTTGCATTATTTGGTGAGTATATAGATTATTGTCTTGAGTATTGCATTTGCATCAAT-GT
1 ATGCATTTGCATTATTTGGTGAATATATAAATTATTATCTTGAGTATTGCATTCACATC-ATGGT
*
18101598 TTGGATG
65 TTGGA-C
* *
18101605 ATGCATTTGCATTATTTGGTGAATATTTAAA-TATTTATTTTGA-TAATTGCATTCACATCATGG
1 ATGCATTTGCATTATTTGGTGAATATATAAATTA-TTATCTTGAGT-ATTGCATTCACATCATGG
18101668 TTTGGAC
64 TTTGGAC
18101675 ATGCATTTGCA
1 ATGCATTTGCA
18101686 CTATGTAGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
70 16 0.23
71 54 0.77
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (70 bp):
ATGCATTTGCATTATTTGGTGAATATATAAATTATTATCTTGAGTATTGCATTCACATCATGGTT
TGGAC
Found at i:18102034 original size:40 final size:39
Alignment explanation
Indices: 18101875--18102034 Score: 135
Period size: 40 Copynumber: 4.1 Consensus size: 39
18101865 AATTTTGGAC
** * ** *
18101875 TTTGAATTATTGAATGAGAAAAAATTTTCAACATGAGAT
1 TTTGAATCCTTGAATGAGGAAAAATTTTCATGATGAAAT
* * ** *
18101914 TTT-AATCCTTAAATGAAGAAAGCTTTTCACGAT-ACAAT
1 TTTGAATCCTTGAATGAGGAAAAATTTTCATGATGA-AAT
* * * *
18101952 TTTGAATCTTTGAATGAGGAAAACCTTTTCATAATGAGAT
1 TTTGAATCCTTGAATGAGGAAAA-ATTTTCATGATGAAAT
*
18101992 TTTGAATCCTTGAACGAGGAAAAATTTTCATGATGAAAAT
1 TTTGAATCCTTGAATGAGGAAAAATTTTCATGATG-AAAT
18102032 TTT
1 TTT
18102035 TTTAGATGAG
Statistics
Matches: 94, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.28
39 28 0.30
40 38 0.40
41 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (39 bp):
TTTGAATCCTTGAATGAGGAAAAATTTTCATGATGAAAT
Found at i:18102293 original size:22 final size:22
Alignment explanation
Indices: 18102264--18102332 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
18102254 TAAAGCTTTC
18102264 AGATGTGAATATTTGAAATTTT
1 AGATGTGAATATTTGAAATTTT
* * * *
18102286 GGATGTGAATCTCTAAAATTTTT
1 AGATGTGAATATTTGAAA-TTTT
* *
18102309 AAATGTGAATATTTGAATTTTT
1 AGATGTGAATATTTGAAATTTT
18102331 AG
1 AG
18102333 TTAAAAATTA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
22 19 0.54
23 16 0.46
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (22 bp):
AGATGTGAATATTTGAAATTTT
Found at i:18102541 original size:21 final size:21
Alignment explanation
Indices: 18102508--18102612 Score: 95
Period size: 21 Copynumber: 4.9 Consensus size: 21
18102498 GAATTTCTAA
18102508 AATTTTTGAATGTGAATCTTTG
1 AATTTTTG-ATGTGAATCTTTG
* *
18102530 AATTTTTGATGT-AAGCCTTG
1 AATTTTTGATGTGAATCTTTG
*
18102550 AAATTTTTTATGTGAATCTTTG
1 -AATTTTTGATGTGAATCTTTG
* *
18102572 AATTTTTTAAATGAGAATCTTTG
1 AA-TTTTT-GATGTGAATCTTTG
* * *
18102595 AATTCTGGTTGTGAATCT
1 AATTTTTGATGTGAATCT
18102613 CTAAAATTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
20 6 0.09
21 25 0.37
22 22 0.33
23 14 0.21
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.49
Consensus pattern (21 bp):
AATTTTTGATGTGAATCTTTG
Found at i:18102628 original size:44 final size:44
Alignment explanation
Indices: 18102559--18102653 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
18102549 GAAATTTTTT
* * * *
18102559 ATGTGAATCTTTGAATTTTTTAAATG-AGAATCTTTGAATTCTGG
1 ATGTGAATCTCTAAAATTTTCAAATGCA-AATCTTTGAATTCTGG
* * *
18102603 TTGTGAATCTCTAAAATTTTCAAATGCAAATCTTTGGATTTTGG
1 ATGTGAATCTCTAAAATTTTCAAATGCAAATCTTTGAATTCTGG
18102647 ATGTGAA
1 ATGTGAA
18102654 ATTAAAAATC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (44 bp):
ATGTGAATCTCTAAAATTTTCAAATGCAAATCTTTGAATTCTGG
Found at i:18102944 original size:17 final size:17
Alignment explanation
Indices: 18102924--18102964 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
18102914 CTTGAGACTT
*
18102924 TTAAATTCTTGGAAATC
1 TTAAATTCTTGCAAATC
* *
18102941 TTAAATTTTTGCTAATC
1 TTAAATTCTTGCAAATC
18102958 TTAAATT
1 TTAAATT
18102965 GTTATGAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (17 bp):
TTAAATTCTTGCAAATC
Found at i:18103067 original size:17 final size:18
Alignment explanation
Indices: 18103047--18103085 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
18103037 TGTATCTTCT
* *
18103047 AATCTTACGAAT-TTTCA
1 AATCTTACAAATCTTTAA
18103064 AATCTTACAAATCTTTAA
1 AATCTTACAAATCTTTAA
18103082 AATC
1 AATC
18103086 CTGCATAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (18 bp):
AATCTTACAAATCTTTAA
Found at i:18103179 original size:42 final size:44
Alignment explanation
Indices: 18103132--18103225 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 44
18103122 TTGCACACAT
*
18103132 TTGAATTTCAAAATGTGAACCTTTAAATTT-AA-TT-GTGAATCA
1 TTGAATTTCAAAATATGAACCTTTAAATTTCAAGTTGGT-AATCA
* * *
18103174 TTGAATTTCAAATTATGAACTTTTAAATTTCAAGTTGGTAATCC
1 TTGAATTTCAAAATATGAACCTTTAAATTTCAAGTTGGTAATCA
18103218 TTGAATTT
1 TTGAATTT
18103226 GAAATCATGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 27 0.60
43 2 0.04
44 14 0.31
45 2 0.04
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.44
Consensus pattern (44 bp):
TTGAATTTCAAAATATGAACCTTTAAATTTCAAGTTGGTAATCA
Found at i:18103192 original size:22 final size:22
Alignment explanation
Indices: 18103132--18103193 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 22
18103122 TTGCACACAT
* *
18103132 TTGAATTTCAAAATGTGAACCT
1 TTGAATTTCAAATTGTGAACCA
* *
18103154 TTAAATTT--AATTGTGAATCA
1 TTGAATTTCAAATTGTGAACCA
*
18103174 TTGAATTTCAAATTATGAAC
1 TTGAATTTCAAATTGTGAAC
18103194 TTTTAAATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 16 0.52
22 15 0.48
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (22 bp):
TTGAATTTCAAATTGTGAACCA
Found at i:18103202 original size:22 final size:22
Alignment explanation
Indices: 18103135--18103206 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
18103125 CACACATTTG
* *
18103135 AATTTCAAAATGTGAACCTTTA
1 AATTTCAAATTGTGAACTTTTA
* *
18103157 AATTT--AATTGTGAA-TCATTG
1 AATTTCAAATTGTGAACT-TTTA
*
18103177 AATTTCAAATTATGAACTTTTA
1 AATTTCAAATTGTGAACTTTTA
18103199 AATTTCAA
1 AATTTCAA
18103207 GTTGGTAATC
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
20 15 0.38
22 23 0.59
23 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (22 bp):
AATTTCAAATTGTGAACTTTTA
Found at i:18103236 original size:44 final size:42
Alignment explanation
Indices: 18103132--18103242 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 42
18103122 TTGCACACAT
* *
18103132 TTGAATTTCAAAAT-GTGAACCTTTAAATTTAATTGTGAATCA
1 TTGAATTTC-AAATCATGAACTTTTAAATTTAATTGTGAATCA
* *
18103174 TTGAATTTCAAATTATGAACTTTTAAATTTCAAGTTG-GTAATCC
1 TTGAATTTCAAATCATGAACTTTTAAATTT-AA-TTGTG-AATCA
* *
18103218 TTGAATTTGAAATCATGAATTTTTA
1 TTGAATTTCAAATCATGAACTTTTA
18103243 TTTCATATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
41 4 0.07
42 23 0.39
43 3 0.05
44 29 0.49
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (42 bp):
TTGAATTTCAAATCATGAACTTTTAAATTTAATTGTGAATCA
Found at i:18103745 original size:7 final size:7
Alignment explanation
Indices: 18103735--18109895 Score: 12021
Period size: 7 Copynumber: 881.9 Consensus size: 7
18103725 AAAGAAAAAA
18103735 GTTTAGG
1 GTTTAGG
18103742 GTTTAGG
1 GTTTAGG
18103749 GTTTAGG
1 GTTTAGG
18103756 GTTTAGG
1 GTTTAGG
18103763 GTTTAGG
1 GTTTAGG
18103770 GTTTAGG
1 GTTTAGG
18103777 GTTTAGG
1 GTTTAGG
18103784 GTTTAGG
1 GTTTAGG
18103791 GTTTAGG
1 GTTTAGG
18103798 GTTTAGG
1 GTTTAGG
18103805 GTTTAGG
1 GTTTAGG
18103812 GTTTAGG
1 GTTTAGG
18103819 GTTTAGG
1 GTTTAGG
18103826 GTTTAGG
1 GTTTAGG
18103833 GTTTAGG
1 GTTTAGG
18103840 GTTTAGG
1 GTTTAGG
18103847 GTTTAGG
1 GTTTAGG
18103854 GTTTAGG
1 GTTTAGG
18103861 G-TTAGG
1 GTTTAGG
18103867 GTTTAGG
1 GTTTAGG
18103874 GTTTAGG
1 GTTTAGG
18103881 GTTTAGG
1 GTTTAGG
18103888 GTTTAGG
1 GTTTAGG
18103895 GTTTAGG
1 GTTTAGG
18103902 GTTTAGG
1 GTTTAGG
18103909 GTTTAGG
1 GTTTAGG
18103916 GTTTAGG
1 GTTTAGG
18103923 GTTTAGG
1 GTTTAGG
18103930 GTTTAGG
1 GTTTAGG
18103937 GTTTAGG
1 GTTTAGG
18103944 GTTTAGG
1 GTTTAGG
18103951 GTTTAGG
1 GTTTAGG
18103958 GTTTAGG
1 GTTTAGG
18103965 GTTTAGG
1 GTTTAGG
18103972 G-TTA-G
1 GTTTAGG
18103977 GTTTAGG
1 GTTTAGG
18103984 GTTTAGG
1 GTTTAGG
18103991 GTTTAGG
1 GTTTAGG
18103998 GTTTAGG
1 GTTTAGG
18104005 GTTTAGG
1 GTTTAGG
18104012 GTTTAGG
1 GTTTAGG
18104019 GTTTAGG
1 GTTTAGG
18104026 GTTTAGG
1 GTTTAGG
18104033 GTTTAGG
1 GTTTAGG
18104040 GTTTAGG
1 GTTTAGG
18104047 GTTTAGG
1 GTTTAGG
18104054 GTTTA-G
1 GTTTAGG
18104060 GTTTAGG
1 GTTTAGG
18104067 GTTTAGG
1 GTTTAGG
18104074 GTTTAGG
1 GTTTAGG
18104081 G-TTAGG
1 GTTTAGG
18104087 GTTTAGG
1 GTTTAGG
18104094 GTTTAGG
1 GTTTAGG
18104101 GTTTAGG
1 GTTTAGG
18104108 GTTTAGG
1 GTTTAGG
18104115 GTTTAGG
1 GTTTAGG
18104122 GTTTAGG
1 GTTTAGG
18104129 GTTTAGG
1 GTTTAGG
18104136 GTTTAGG
1 GTTTAGG
18104143 GTTTAGG
1 GTTTAGG
18104150 GTTTAGG
1 GTTTAGG
18104157 GTTTAGG
1 GTTTAGG
18104164 GTTTAGG
1 GTTTAGG
18104171 GTTTAGG
1 GTTTAGG
18104178 GTTTAGG
1 GTTTAGG
18104185 GTTTAGG
1 GTTTAGG
18104192 GTTTAGG
1 GTTTAGG
18104199 GTTTAGG
1 GTTTAGG
18104206 G-TTAGG
1 GTTTAGG
18104212 GTTTAGG
1 GTTTAGG
18104219 GTTTAGG
1 GTTTAGG
18104226 GTTTAGG
1 GTTTAGG
18104233 GTTTAGG
1 GTTTAGG
18104240 GTTTAGG
1 GTTTAGG
18104247 GTTTAGG
1 GTTTAGG
18104254 GTTTAGG
1 GTTTAGG
18104261 GTTTAGG
1 GTTTAGG
18104268 GTTTAGG
1 GTTTAGG
18104275 GTTTAGG
1 GTTTAGG
18104282 GTTTAGG
1 GTTTAGG
18104289 GTTTAGG
1 GTTTAGG
18104296 GTTTAGG
1 GTTTAGG
18104303 GTTTAGG
1 GTTTAGG
18104310 GTTTAGG
1 GTTTAGG
18104317 GTTTAGG
1 GTTTAGG
18104324 GTTTAGG
1 GTTTAGG
18104331 GTTTAGG
1 GTTTAGG
18104338 GTTTAGG
1 GTTTAGG
18104345 GTTTAGG
1 GTTTAGG
18104352 GTTTAGG
1 GTTTAGG
18104359 GTTTAGG
1 GTTTAGG
18104366 GTTTAGG
1 GTTTAGG
18104373 GTTTAGG
1 GTTTAGG
18104380 GTTTAGG
1 GTTTAGG
18104387 GTTTAGG
1 GTTTAGG
18104394 GTTTTAGG
1 G-TTTAGG
18104402 GTTTAGG
1 GTTTAGG
18104409 GTTTAGG
1 GTTTAGG
18104416 GTTTAGG
1 GTTTAGG
18104423 GTTTAGG
1 GTTTAGG
18104430 GTTTAGG
1 GTTTAGG
18104437 GTTTAGG
1 GTTTAGG
18104444 GTTTAGG
1 GTTTAGG
18104451 GTTTAGG
1 GTTTAGG
18104458 GTTTAGG
1 GTTTAGG
18104465 GTTTAGG
1 GTTTAGG
18104472 GTTTAGG
1 GTTTAGG
18104479 GTTTAGG
1 GTTTAGG
18104486 G-TTAGG
1 GTTTAGG
18104492 GTTTAGG
1 GTTTAGG
18104499 GTTTAGG
1 GTTTAGG
18104506 GTTTAGG
1 GTTTAGG
18104513 GTTTAGG
1 GTTTAGG
18104520 GTTTAGG
1 GTTTAGG
18104527 GTTTAGG
1 GTTTAGG
18104534 GTTTAGG
1 GTTTAGG
18104541 GTTTAGG
1 GTTTAGG
18104548 GTTTAGG
1 GTTTAGG
18104555 GTTTAGG
1 GTTTAGG
18104562 GTTTAGG
1 GTTTAGG
18104569 GTTTAGG
1 GTTTAGG
18104576 GTTTAGG
1 GTTTAGG
18104583 GTTTAGG
1 GTTTAGG
18104590 GTTTAGG
1 GTTTAGG
18104597 GTTTAGG
1 GTTTAGG
18104604 GTTTAGG
1 GTTTAGG
18104611 GTTTAGG
1 GTTTAGG
18104618 GTTTAGG
1 GTTTAGG
18104625 GTTTAGG
1 GTTTAGG
18104632 GTTTAGG
1 GTTTAGG
18104639 GTTTAGG
1 GTTTAGG
18104646 GTTTAGG
1 GTTTAGG
18104653 GTTTAGG
1 GTTTAGG
18104660 GTTTAGG
1 GTTTAGG
18104667 GTTTAGG
1 GTTTAGG
18104674 GTTTAGG
1 GTTTAGG
18104681 GTTTAGG
1 GTTTAGG
18104688 GTTTAGG
1 GTTTAGG
18104695 GTTTAGG
1 GTTTAGG
18104702 GTTTAGG
1 GTTTAGG
18104709 GTTTAGG
1 GTTTAGG
18104716 GTTTAGG
1 GTTTAGG
18104723 GTTTAGG
1 GTTTAGG
18104730 GTTTAGG
1 GTTTAGG
18104737 GTTTAGG
1 GTTTAGG
18104744 GTTTAGG
1 GTTTAGG
18104751 GTTTAGG
1 GTTTAGG
18104758 GTTTAGG
1 GTTTAGG
18104765 G-TTAGG
1 GTTTAGG
18104771 GTTTAGG
1 GTTTAGG
18104778 GTTTAGG
1 GTTTAGG
18104785 G-TTAGG
1 GTTTAGG
18104791 GTTTAGG
1 GTTTAGG
18104798 GTTTAGG
1 GTTTAGG
18104805 GTTTAGG
1 GTTTAGG
18104812 GTTTAGG
1 GTTTAGG
18104819 GTTTAGG
1 GTTTAGG
18104826 GTTTAGG
1 GTTTAGG
18104833 GTTTAGG
1 GTTTAGG
18104840 GTTTAGG
1 GTTTAGG
18104847 G-TTAGG
1 GTTTAGG
18104853 GTTTAGG
1 GTTTAGG
18104860 GTTTAGG
1 GTTTAGG
*
18104867 TAGGTTAGG
1 --GTTTAGG
18104876 GTTTAGG
1 GTTTAGG
18104883 GTTTAGG
1 GTTTAGG
18104890 GTTTAGG
1 GTTTAGG
18104897 GTTTAGG
1 GTTTAGG
18104904 GTTTAGG
1 GTTTAGG
18104911 GTTTAGG
1 GTTTAGG
18104918 GTTTAGG
1 GTTTAGG
18104925 GTTTAGG
1 GTTTAGG
18104932 GTTTAGG
1 GTTTAGG
18104939 GTTTAGG
1 GTTTAGG
18104946 GTTTAGG
1 GTTTAGG
18104953 GTTTAGG
1 GTTTAGG
18104960 GTTTAGG
1 GTTTAGG
18104967 GTTTAGG
1 GTTTAGG
18104974 GTTTAGG
1 GTTTAGG
18104981 GTTTAGG
1 GTTTAGG
18104988 GTTTAGG
1 GTTTAGG
18104995 GTTTAGG
1 GTTTAGG
18105002 GTTTAGG
1 GTTTAGG
18105009 GTTTAGG
1 GTTTAGG
18105016 GTTTAGG
1 GTTTAGG
18105023 GTTTAGG
1 GTTTAGG
18105030 GTTTAGG
1 GTTTAGG
18105037 GTTTAGG
1 GTTTAGG
18105044 GTTTAGG
1 GTTTAGG
18105051 GTTTAGG
1 GTTTAGG
18105058 GTTTAGG
1 GTTTAGG
18105065 GTTTAGG
1 GTTTAGG
18105072 GTTTAGG
1 GTTTAGG
18105079 GTTTAGG
1 GTTTAGG
18105086 GTTTAGG
1 GTTTAGG
18105093 GTTTAGG
1 GTTTAGG
18105100 GTTTAGG
1 GTTTAGG
18105107 GTTTAGG
1 GTTTAGG
18105114 GTTTAGG
1 GTTTAGG
18105121 GTTTAGG
1 GTTTAGG
18105128 GTTTAGG
1 GTTTAGG
18105135 GTTTAGG
1 GTTTAGG
18105142 GTTTAGG
1 GTTTAGG
18105149 GTTTAGG
1 GTTTAGG
18105156 GTTTAGG
1 GTTTAGG
18105163 GTTTAGG
1 GTTTAGG
18105170 GTTTAGG
1 GTTTAGG
18105177 GTTTAGG
1 GTTTAGG
18105184 GTTTAGG
1 GTTTAGG
18105191 GTTTAGG
1 GTTTAGG
18105198 GTTTAGG
1 GTTTAGG
18105205 GTTTAGG
1 GTTTAGG
18105212 GTTTAGG
1 GTTTAGG
18105219 GTTTAGG
1 GTTTAGG
18105226 GTTTAGG
1 GTTTAGG
18105233 GTTTAGG
1 GTTTAGG
18105240 GTTTAGG
1 GTTTAGG
18105247 GTTTAGG
1 GTTTAGG
18105254 GTTTAGG
1 GTTTAGG
18105261 GTTTAGG
1 GTTTAGG
18105268 GTTTAGG
1 GTTTAGG
18105275 GTTTAGG
1 GTTTAGG
18105282 GTTTAGG
1 GTTTAGG
18105289 GTTTAGG
1 GTTTAGG
18105296 GTTTAGG
1 GTTTAGG
18105303 GTTTAGG
1 GTTTAGG
18105310 GTTTAGG
1 GTTTAGG
18105317 GTTTAGG
1 GTTTAGG
18105324 GTTTAGG
1 GTTTAGG
18105331 GTTTAGG
1 GTTTAGG
18105338 GTTTAGG
1 GTTTAGG
18105345 GTTTAGG
1 GTTTAGG
18105352 GTTTAGG
1 GTTTAGG
18105359 GTTTAGG
1 GTTTAGG
18105366 GTTTAGG
1 GTTTAGG
18105373 GTTTAGG
1 GTTTAGG
18105380 GTTTAGG
1 GTTTAGG
18105387 GTTTAGG
1 GTTTAGG
18105394 GTTTAGG
1 GTTTAGG
18105401 GTTTAGG
1 GTTTAGG
18105408 GTTTAGG
1 GTTTAGG
18105415 GTTTAGG
1 GTTTAGG
18105422 GTTTAGG
1 GTTTAGG
18105429 GTTTAGG
1 GTTTAGG
18105436 GTTTAGG
1 GTTTAGG
18105443 GTTTAGG
1 GTTTAGG
18105450 GTTTAGG
1 GTTTAGG
18105457 GTTTAGG
1 GTTTAGG
18105464 GTTTAGG
1 GTTTAGG
18105471 GTTTAGG
1 GTTTAGG
18105478 GTTTAGG
1 GTTTAGG
18105485 GTTTAGG
1 GTTTAGG
18105492 GTTTAGG
1 GTTTAGG
18105499 GTTTAGG
1 GTTTAGG
18105506 GTTTAGG
1 GTTTAGG
18105513 GTTTTAGG
1 G-TTTAGG
18105521 GTTTAGG
1 GTTTAGG
18105528 GTTTAGG
1 GTTTAGG
18105535 GTTTAGG
1 GTTTAGG
18105542 GTTTAGG
1 GTTTAGG
18105549 GTTTAGG
1 GTTTAGG
18105556 GTTTAGG
1 GTTTAGG
18105563 GTTTAGG
1 GTTTAGG
18105570 GTTTAGG
1 GTTTAGG
18105577 GTTTAGG
1 GTTTAGG
18105584 GTTTAGG
1 GTTTAGG
18105591 GTTTAGG
1 GTTTAGG
18105598 GTTTAGG
1 GTTTAGG
18105605 GTTTAGG
1 GTTTAGG
18105612 GTTTAGG
1 GTTTAGG
18105619 GTTTAGG
1 GTTTAGG
18105626 GTTTAGG
1 GTTTAGG
18105633 GTTTAGG
1 GTTTAGG
18105640 GTTTAGG
1 GTTTAGG
18105647 GTTTAGG
1 GTTTAGG
18105654 GTTTAGG
1 GTTTAGG
18105661 GTTTAGG
1 GTTTAGG
18105668 GTTTAGG
1 GTTTAGG
18105675 GTTTAGG
1 GTTTAGG
18105682 GTTTAGG
1 GTTTAGG
18105689 GTTTAGG
1 GTTTAGG
18105696 GTTTAGG
1 GTTTAGG
18105703 GTTTAGG
1 GTTTAGG
18105710 G-TTAGG
1 GTTTAGG
18105716 GTTTAGG
1 GTTTAGG
18105723 GTTTAGG
1 GTTTAGG
18105730 GTTTAGG
1 GTTTAGG
18105737 GTTTAGG
1 GTTTAGG
18105744 GTTTAGG
1 GTTTAGG
18105751 GTTTAGG
1 GTTTAGG
18105758 GTTTAGG
1 GTTTAGG
18105765 GTTTAGG
1 GTTTAGG
18105772 GTTTAGG
1 GTTTAGG
18105779 GTTTAGG
1 GTTTAGG
18105786 GTTTAGG
1 GTTTAGG
18105793 GTTTAGG
1 GTTTAGG
18105800 GTTTAGG
1 GTTTAGG
18105807 G-TTAGG
1 GTTTAGG
18105813 GTTTAGG
1 GTTTAGG
18105820 GTTTAGG
1 GTTTAGG
18105827 GTTTAGG
1 GTTTAGG
18105834 GTTTAGG
1 GTTTAGG
18105841 GTTTAGG
1 GTTTAGG
18105848 GTTTAGG
1 GTTTAGG
18105855 G-TTAGG
1 GTTTAGG
18105861 GTTTAGG
1 GTTTAGG
18105868 GTTTAGG
1 GTTTAGG
18105875 GTTTAGG
1 GTTTAGG
18105882 GTTTAGG
1 GTTTAGG
18105889 GTTTAGG
1 GTTTAGG
18105896 GTTTAGG
1 GTTTAGG
18105903 GTTTAGG
1 GTTTAGG
18105910 GTTTAGG
1 GTTTAGG
18105917 GTTTAGG
1 GTTTAGG
18105924 GTTTAGG
1 GTTTAGG
18105931 GTTTAGG
1 GTTTAGG
18105938 GTTTAGG
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1 GTTTAGG
18109387 GTTTAGG
1 GTTTAGG
18109394 GTTTAGG
1 GTTTAGG
18109401 GTTTAGG
1 GTTTAGG
18109408 GTTTAGG
1 GTTTAGG
18109415 GTTTAGG
1 GTTTAGG
18109422 GTTTAGG
1 GTTTAGG
18109429 GTTTAGG
1 GTTTAGG
18109436 GTTTAGG
1 GTTTAGG
18109443 GTTTAGG
1 GTTTAGG
18109450 GTTTAGG
1 GTTTAGG
18109457 GTTTAGG
1 GTTTAGG
18109464 GTTTAGG
1 GTTTAGG
18109471 GTTTAGG
1 GTTTAGG
18109478 GTTTAGG
1 GTTTAGG
18109485 GTTTAGG
1 GTTTAGG
18109492 GTTTAGG
1 GTTTAGG
18109499 GTTTAGG
1 GTTTAGG
18109506 GTTTAGG
1 GTTTAGG
18109513 GTTTAGG
1 GTTTAGG
18109520 GTTTAGG
1 GTTTAGG
18109527 GTTTAGG
1 GTTTAGG
18109534 GTTTAGG
1 GTTTAGG
18109541 GTTTAGG
1 GTTTAGG
18109548 GTTTAGG
1 GTTTAGG
18109555 GTTTAGG
1 GTTTAGG
18109562 GTTTAGG
1 GTTTAGG
18109569 GTTTAGG
1 GTTTAGG
18109576 GTTTAGG
1 GTTTAGG
18109583 GTTTAGG
1 GTTTAGG
18109590 GTTTAGG
1 GTTTAGG
18109597 GTTTAGG
1 GTTTAGG
18109604 GTTTAGG
1 GTTTAGG
18109611 GTTTAGG
1 GTTTAGG
18109618 GTTTAGG
1 GTTTAGG
18109625 GTTTAGG
1 GTTTAGG
18109632 GTTTAGG
1 GTTTAGG
18109639 GTTTAGG
1 GTTTAGG
18109646 GTTTAGG
1 GTTTAGG
18109653 GTTTAGG
1 GTTTAGG
18109660 GTTTAGG
1 GTTTAGG
18109667 GTTTAGG
1 GTTTAGG
18109674 GTTTAGG
1 GTTTAGG
18109681 GTTTAGG
1 GTTTAGG
18109688 GTTTAGG
1 GTTTAGG
18109695 GTTTAGG
1 GTTTAGG
18109702 GTTTAGG
1 GTTTAGG
18109709 GTTTAGG
1 GTTTAGG
18109716 GTTTAGG
1 GTTTAGG
18109723 GTTTAGG
1 GTTTAGG
18109730 GTTTAGG
1 GTTTAGG
18109737 GTTTAGG
1 GTTTAGG
18109744 GTTTAGG
1 GTTTAGG
18109751 GTTTAGG
1 GTTTAGG
18109758 GTTTAGG
1 GTTTAGG
18109765 GTTTAGG
1 GTTTAGG
18109772 GTTTAGG
1 GTTTAGG
18109779 GTTTAGG
1 GTTTAGG
18109786 GTTTAGG
1 GTTTAGG
18109793 GTTTAGG
1 GTTTAGG
18109800 GTTTAGG
1 GTTTAGG
18109807 GTTTAGG
1 GTTTAGG
18109814 GTTTAGG
1 GTTTAGG
18109821 G-TTAGG
1 GTTTAGG
18109827 GTTTAGG
1 GTTTAGG
18109834 GTTTAGG
1 GTTTAGG
18109841 GTTTAGG
1 GTTTAGG
18109848 GTTTAGG
1 GTTTAGG
18109855 GTTTAGG
1 GTTTAGG
18109862 GTTTAGG
1 GTTTAGG
18109869 GTTTAGG
1 GTTTAGG
18109876 GTTTAGG
1 GTTTAGG
18109883 GTTTAGG
1 GTTTAGG
18109890 GTTTAG
1 GTTTAG
18109896 NNNNNNNNNN
Statistics
Matches: 6115, Mismatches: 2, Indels: 74
0.99 0.00 0.01
Matches are distributed among these distances:
5 7 0.00
6 131 0.02
7 5894 0.96
8 77 0.01
9 6 0.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:18113574 original size:25 final size:26
Alignment explanation
Indices: 18113513--18113575 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 26
18113503 CAAATTTTAG
* *
18113513 TTAGTTAACTTTTAAGAATTTATATTTAT
1 TTAGTCAA-TTTTAAAAATTTATA--TAT
*
18113542 TTACTCAATTTTAAAAATTTATA-AT
1 TTAGTCAATTTTAAAAATTTATATAT
18113567 TTAGTCAAT
1 TTAGTCAAT
18113576 AACAAATAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 10 0.33
28 14 0.47
29 6 0.20
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (26 bp):
TTAGTCAATTTTAAAAATTTATATAT
Found at i:18114038 original size:18 final size:19
Alignment explanation
Indices: 18114015--18114051 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18114005 TCTTACTAGG
*
18114015 TTTTGGTTA-GGTTAGGGT
1 TTTTGGATAGGGTTAGGGT
18114033 TTTTGGATAGGGTTAGGGT
1 TTTTGGATAGGGTTAGGGT
18114052 ATATCTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.46
Consensus pattern (19 bp):
TTTTGGATAGGGTTAGGGT
Found at i:18115052 original size:178 final size:178
Alignment explanation
Indices: 18114739--18115107 Score: 605
Period size: 178 Copynumber: 2.1 Consensus size: 178
18114729 TCTTGAAAAA
18114739 TTAAGTGACTAAAATTTATTTATTTTTAAAGTTTTATAATGCCACAATAACAATGTCATGTGGCT
1 TTAAGTGACTAAAATTTATTTATTTTTAAAGTTTTATAATGCCACAATAACAATGTCATGTGGCT
* * *
18114804 TGTCAAATGAGGTGGCGTGTGCCATGTGGCACCTGAAACTAATGTGCTAGTGCCACGTCAGCATA
66 TGTCAAATGAGGTGGCGAGTGCCATGTGGCACCTGAAACTAATGTGCTAGTGCCACATCAGCACA
* * *
18114869 CTGTTAGTCATTAACGGTTGAGTGACCTAAAATTTAACGGATTCAAAC
131 CTGTTAGTCATTAACAGTTGAGTGACCCAAAATTTAACGAATTCAAAC
* * * *
18114917 TTAAGTGATTAAAATTTATTTATTTTTTAAAGTTTTATAATGCCACATTAGCAATGTTATGTGGC
1 TTAAGTGACTAAAATTTATTTA-TTTTTAAAGTTTTATAATGCCACAATAACAATGTCATGTGGC
*
18114982 TTGTCAAATGAGGTGGC-AGTGCCATGTGGCACCTGAAACTAATGTGGTAGTGCCACATCAGCAC
65 TTGTCAAATGAGGTGGCGAGTGCCATGTGGCACCTGAAACTAATGTGCTAGTGCCACATCAGCAC
*
18115046 ACTGTTAGTCATTAATAGTTGAGTGACCCAAAATTTAACGAATTCAAAC
130 ACTGTTAGTCATTAACAGTTGAGTGACCCAAAATTTAACGAATTCAAAC
*
18115095 TTAAGTAACTAAA
1 TTAAGTGACTAAA
18115108 TTGAAAAAAT
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
178 120 0.68
179 56 0.32
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (178 bp):
TTAAGTGACTAAAATTTATTTATTTTTAAAGTTTTATAATGCCACAATAACAATGTCATGTGGCT
TGTCAAATGAGGTGGCGAGTGCCATGTGGCACCTGAAACTAATGTGCTAGTGCCACATCAGCACA
CTGTTAGTCATTAACAGTTGAGTGACCCAAAATTTAACGAATTCAAAC
Found at i:18116190 original size:15 final size:15
Alignment explanation
Indices: 18116170--18116210 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
18116160 TTTCAATTGC
18116170 ATTTTTATTTATTTT
1 ATTTTTATTTATTTT
*
18116185 ATTTTTATATATTTT
1 ATTTTTATTTATTTT
*
18116200 CTTATTTATTT
1 ATT-TTTATTT
18116211 TCTATTTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTTATTTATTTT
Found at i:18116222 original size:49 final size:48
Alignment explanation
Indices: 18116154--18116252 Score: 119
Period size: 48 Copynumber: 2.0 Consensus size: 48
18116144 TTTTTTTCAT
* *
18116154 TTTATTTTTCAATTGCATTTTTATTTATTTTATTTTTATATATTTTCTTA
1 TTTATTTTTCAATTGCA-TTTTACTTATTTTATTTTT-TAGATTTTCTTA
* * * *
18116204 TTTA-TTTTCTATTTCATTTTACTTGTTTTATTTTTTAGATTTTTTTA
1 TTTATTTTTCAATTGCATTTTACTTATTTTATTTTTTAGATTTTCTTA
18116251 TT
1 TT
18116253 CTACTTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
47 12 0.28
48 17 0.40
49 10 0.23
50 4 0.09
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (48 bp):
TTTATTTTTCAATTGCATTTTACTTATTTTATTTTTTAGATTTTCTTA
Found at i:18117250 original size:20 final size:20
Alignment explanation
Indices: 18117218--18117260 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
18117208 TTTATTTAGC
*
18117218 TATTTAGTTATTCATTT-CA
1 TATTTAGTCATTCATTTGCA
18117237 TATTTATGTCATTCATTTGCA
1 TATTTA-GTCATTCATTTGCA
18117258 TAT
1 TAT
18117261 GCATAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.56
Consensus pattern (20 bp):
TATTTAGTCATTCATTTGCA
Found at i:18127978 original size:65 final size:65
Alignment explanation
Indices: 18127814--18128111 Score: 266
Period size: 64 Copynumber: 4.6 Consensus size: 65
18127804 CTTAATCCCA
* ** * * *
18127814 ATCACCTGTTTTGATCTTGGTTCAATCTATATCATTTTATTTTTTTAACTCATGGTTCAAT-TTG
1 ATCACCTGTTTTGATCTCGACTCAGTCTAAATCATTTTATTTTTTTAACTCATGGTTCAATCTCG
* * * * * **
18127878 ATCACTTGTTTTGATCGCGGCTTAGT-TCAAATCATTTTATTTTTTTGACTTGTGGTTCAATCGT
1 ATCACCTGTTTTGATCTCGACTCAGTCT-AAATCATTTTATTTTTTTAACTCATGGTTCAATC-T
*
18127942 AG
64 CG
* * * * * *
18127944 -TCACCTGTTTTGATCTCGACTCAGTCCAGATCATTTTACTTTTTTGACTTATGGTTTAATCTCG
1 ATCACCTGTTTTGATCTCGACTCAGTCTAAATCATTTTATTTTTTTAACTCATGGTTCAATCTCG
* * * * * ** *
18128008 ATCACATG-TTTGATCTCTACTTAGTCTAGATCATTTTACTTTTTTAACTCGCGATTCAATCTCG
1 ATCACCTGTTTTGATCTCGACTCAGTCTAAATCATTTTATTTTTTTAACTCATGGTTCAATCTCG
* *
18128072 ATCACTTG-TTTGATCTCGACT-TGTCTAAATCATTTTATTT
1 ATCACCTGTTTTGATCTCGACTCAGTCTAAATCATTTTATTT
18128112 CTTGTTTCGT
Statistics
Matches: 193, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
63 17 0.09
64 117 0.61
65 57 0.30
66 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (65 bp):
ATCACCTGTTTTGATCTCGACTCAGTCTAAATCATTTTATTTTTTTAACTCATGGTTCAATCTCG
Found at i:18128031 original size:129 final size:129
Alignment explanation
Indices: 18127814--18128092 Score: 296
Period size: 129 Copynumber: 2.2 Consensus size: 129
18127804 CTTAATCCCA
* ** * * * *
18127814 ATCACCTGTTTTGATCTTGGTTCAATCTATATCATTTTATTTTTTTAACTCATGGTTCAATTTGA
1 ATCACCTGTTTTGATCTCGACTCAATCCAGATCATTTTACTTTTTTAACTCATGGTTCAATTCGA
* * * * * * *
18127879 TCACTTGTTTTGATCGCGGCTTAGT-TCAAATCATTTTATTTTTTTGACTTGTGGTTCAATCGTA
66 TCACATGTTTTGATCGCGACTTAGTCT-AAATCATTTTACTTTTTTAACTCGCGATTCAATC-TA
18127943 G
129 G
* * * *
18127944 -TCACCTGTTTTGATCTCGACTCAGTCCAGATCATTTTACTTTTTTGACTTATGGTTTAATCTCG
1 ATCACCTGTTTTGATCTCGACTCAATCCAGATCATTTTACTTTTTTAACTCATGGTTCAAT-TCG
* * * *
18128008 ATCACATG-TTTGATCTCTACTTAGTCTAGATCATTTTACTTTTTTAACTCGCGATTCAATCTCG
65 ATCACATGTTTTGATCGCGACTTAGTCTAAATCATTTTACTTTTTTAACTCGCGATTCAATCTAG
*
18128072 ATCACTTG-TTTGATCTCGACT
1 ATCACCTGTTTTGATCTCGACT
18128093 TGTCTAAATC
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
128 15 0.12
129 98 0.80
130 10 0.08
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (129 bp):
ATCACCTGTTTTGATCTCGACTCAATCCAGATCATTTTACTTTTTTAACTCATGGTTCAATTCGA
TCACATGTTTTGATCGCGACTTAGTCTAAATCATTTTACTTTTTTAACTCGCGATTCAATCTAG
Found at i:18128415 original size:3 final size:3
Alignment explanation
Indices: 18128401--18128437 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
18128391 TTGTATTTAC
*
18128401 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
18128438 TATTTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:18128842 original size:21 final size:21
Alignment explanation
Indices: 18128818--18128862 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
18128808 AATTTTCTAG
*
18128818 AAAATTTGAGAAATTCCTGAA
1 AAAATTTGAAAAATTCCTGAA
*
18128839 AAAATTTGAAAAATTCTTGAA
1 AAAATTTGAAAAATTCCTGAA
18128860 AAA
1 AAA
18128863 TCAGGGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAATTTGAAAAATTCCTGAA
Found at i:18129245 original size:23 final size:25
Alignment explanation
Indices: 18129192--18129275 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 25
18129182 TTTTTTTTTC
*
18129192 ATTTTATTTTTA-ATTACATTTTTAATT
1 ATTTTATTTTTATA-T-CA-TTTTACTT
18129219 ATTTTATTTTTATAT-ATTTT-CTT
1 ATTTTATTTTTATATCATTTTACTT
*
18129242 A-TTTATTTTTTATTTCATTTTACTT
1 ATTTTA-TTTTTATATCATTTTACTT
18129267 ATTTT-TTTT
1 ATTTTATTTT
18129276 GGATTTTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 13 0.26
25 5 0.10
26 3 0.06
27 13 0.26
28 1 0.02
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (25 bp):
ATTTTATTTTTATATCATTTTACTT
Found at i:18129248 original size:12 final size:12
Alignment explanation
Indices: 18129228--18129274 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
18129218 TATTTTATTT
*
18129228 TTATATATTTTC
1 TTATTTATTTTC
18129240 TTATTTATTTT-
1 TTATTTATTTTC
18129251 TTATTTCATTTTAC
1 TTATTT-ATTTT-C
18129265 TTATTT-TTTT
1 TTATTTATTTT
18129275 TGGATTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
11 6 0.19
12 19 0.61
14 6 0.19
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (12 bp):
TTATTTATTTTC
Found at i:18129248 original size:22 final size:24
Alignment explanation
Indices: 18129194--18129275 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 24
18129184 TTTTTTTCAT
*
18129194 TTTATTTTTA-ATTACATTTTTAATTA
1 TTTATTTTTATA-T-CA-TTTTACTTA
18129220 TTTTATTTTTATAT-ATTTT-CTTA
1 -TTTATTTTTATATCATTTTACTTA
*
18129243 TTTATTTTTTATTTCATTTTACTTA
1 TTTA-TTTTTATATCATTTTACTTA
18129268 TTT-TTTTT
1 TTTATTTTT
18129276 GGATTTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
22 4 0.08
23 16 0.33
24 9 0.18
25 8 0.16
27 11 0.22
28 1 0.02
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTATTTTTATATCATTTTACTTA
Found at i:18133036 original size:57 final size:58
Alignment explanation
Indices: 18132893--18133045 Score: 195
Period size: 57 Copynumber: 2.6 Consensus size: 58
18132883 TCTAAAATTT
* **
18132893 TTTGAGAAAAAGTTGAACTATCAATTTTTCTTAAATAAAAAAAAATATTTTTAAAAAATG
1 TTTGAGAAAAAGTTGAAGTATCAATTTTT-TTAAA-AAAAAAAAATATAATTAAAAAATG
*
18132953 TTTGAGGAAAAA-TTGAAGTATCAATTTTTTTAAAATAAAAAAAT-TAATTAAAAAATG
1 TTTGA-GAAAAAGTTGAAGTATCAATTTTTTTAAAAAAAAAAAATATAATTAAAAAATG
* * *
18133010 TTTGAGAAAAAGTCGAGGTATTAA-TTTTTTAAAAAA
1 TTTGAGAAAAAGTTGAAGTATCAATTTTTTTAAAAAA
18133046 TATATTTCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
56 17 0.20
57 25 0.30
58 9 0.11
59 5 0.06
60 21 0.25
61 6 0.07
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (58 bp):
TTTGAGAAAAAGTTGAAGTATCAATTTTTTTAAAAAAAAAAAATATAATTAAAAAATG
Found at i:18137787 original size:20 final size:21
Alignment explanation
Indices: 18137738--18137794 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 21
18137728 TTTAATAATT
*
18137738 ACATTTGCATCATGGTTTAGTCAT
1 ACATTTGCATCA---TTTAGTCAA
18137762 ACATTTGCATCATTTAGT-AA
1 ACATTTGCATCATTTAGTCAA
*
18137782 ACATTTGAATCAT
1 ACATTTGCATCAT
18137795 AGTTTAGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.42
21 6 0.19
24 12 0.39
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (21 bp):
ACATTTGCATCATTTAGTCAA
Found at i:18138120 original size:46 final size:45
Alignment explanation
Indices: 18138052--18138163 Score: 116
Period size: 46 Copynumber: 2.5 Consensus size: 45
18138042 TTTCGAGCAT
* * * * * *
18138052 AATCTTTAAAATTTTGTAAATAATAATCTTTGAAATATTGGATGTG
1 AATCTCTAAAATTTTTTGAATAAGAATATTTGAAAT-TTGAATGTG
* * * *
18138098 AATCTCTAAAGTTTTTTGAATAAGGATATTTGGAATTTTAATGTG
1 AATCTCTAAAATTTTTTGAATAAGAATATTTGAAATTTGAATGTG
*
18138143 AATCACTAAAATTTTTTGAAT
1 AATCTCTAAAATTTTTTGAAT
18138164 CTTTGCATTT
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 26 0.48
46 28 0.52
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (45 bp):
AATCTCTAAAATTTTTTGAATAAGAATATTTGAAATTTGAATGTG
Found at i:18138384 original size:35 final size:33
Alignment explanation
Indices: 18138345--18138486 Score: 112
Period size: 34 Copynumber: 4.2 Consensus size: 33
18138335 ATCTAAAAGT
18138345 TCTTGCAAAGTTGAAATTCTTACT-AATTTGAAAA
1 TCTTGCAAA-TTGAAATTCTTA-TAAATTTGAAAA
*
18138379 CTCTTGTGAAATTGAAATTCTTATAAATTTGAAAA
1 -TCTTG-CAAATTGAAATTCTTATAAATTTGAAAA
* *
18138414 TCTTGCAAATCTGTAAA-TCTTGTGAATTT-AAAA
1 TCTTGCAAAT-TG-AAATTCTTATAAATTTGAAAA
** * * *
18138447 TTCTTATAAATATGAAATTCTTGTGAATCT-AAAA
1 -TCTTGCAAAT-TGAAATTCTTATAAATTTGAAAA
18138481 TCTTGC
1 TCTTGC
18138487 GAATATATAA
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
33 15 0.16
34 43 0.47
35 30 0.33
36 3 0.03
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (33 bp):
TCTTGCAAATTGAAATTCTTATAAATTTGAAAA
Found at i:18138442 original size:34 final size:33
Alignment explanation
Indices: 18138397--18138545 Score: 120
Period size: 34 Copynumber: 4.4 Consensus size: 33
18138387 AAATTGAAAT
* *
18138397 TCTTATAAATTTGAAAATCTTGCAAATCTGTAAA
1 TCTTGTAAATTT-AAAATCTTGCAAATATGTAAA
* **
18138431 TCTTGTGAATTTAAAATTCTTATAAATATG-AAA
1 TCTTGTAAATTTAAAA-TCTTGCAAATATGTAAA
* * * * *
18138464 TTCTTGTGAATCTAAAATCTTGCGAATATATAAT
1 -TCTTGTAAATTTAAAATCTTGCAAATATGTAAA
* * * *
18138498 TCCTGCAAATCTAAAAATCTTGCAAATTTGTAAA
1 TCTTGTAAAT-TTAAAATCTTGCAAATATGTAAA
*
18138532 TCTTGCAAATTTAA
1 TCTTGTAAATTTAA
18138546 GTTCTTGCGA
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
33 26 0.29
34 63 0.71
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (33 bp):
TCTTGTAAATTTAAAATCTTGCAAATATGTAAA
Found at i:18138448 original size:51 final size:51
Alignment explanation
Indices: 18138393--18138545 Score: 164
Period size: 51 Copynumber: 3.0 Consensus size: 51
18138383 TGTGAAATTG
* *
18138393 AAATTCTTATAAATTTGAAAATCTTGCAAATCTGTAAATCTTGTGAATTTA
1 AAATTCTTATAAATATGAAAATCTTGCAAATCTGTAAATCTTGCGAATTTA
* ** * *
18138444 AAATTCTTATAAATATGAAATTCTTGTGAATCT-AAAATCTTGCGAATATA
1 AAATTCTTATAAATATGAAAATCTTGCAAATCTGTAAATCTTGCGAATTTA
* * ** * * * *
18138494 TAATTCCTGCAAATCTAAAAATCTTGCAAATTTGTAAATCTTGCAAATTTA
1 AAATTCTTATAAATATGAAAATCTTGCAAATCTGTAAATCTTGCGAATTTA
18138545 A
1 A
18138546 GTTCTTGCGA
Statistics
Matches: 80, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 37 0.46
51 43 0.54
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.39
Consensus pattern (51 bp):
AAATTCTTATAAATATGAAAATCTTGCAAATCTGTAAATCTTGCGAATTTA
Found at i:18138481 original size:17 final size:17
Alignment explanation
Indices: 18138308--18138524 Score: 86
Period size: 17 Copynumber: 12.6 Consensus size: 17
18138298 TGAATTTGAG
*
18138308 TTCTTGTGAATCTAAAAA
1 TTCTTGTAAATCT-AAAA
*
18138326 TTATTGTAAATCTAAAA
1 TTCTTGTAAATCTAAAA
* *
18138343 GTTCTTGCAAAGT-TGAAA
1 -TTCTTGTAAA-TCTAAAA
* *
18138361 TTCTTACT-AATTTGAAAA
1 TTCTT-GTAAATCT-AAAA
* *
18138379 CTCTTGTGAAAT-TGAAA
1 TTCTTGT-AAATCTAAAA
* *
18138396 TTCTTATAAATTTGAAAA
1 TTCTTGTAAATCT-AAAA
* *
18138414 -TCTTGCAAATCTGTAAA
1 TTCTTGTAAATCT-AAAA
* *
18138431 -TCTTGTGAATTTAAAA
1 TTCTTGTAAATCTAAAA
* * *
18138447 TTCTTATAAATATGAAA
1 TTCTTGTAAATCTAAAA
*
18138464 TTCTTGTGAATCTAAAA
1 TTCTTGTAAATCTAAAA
** * *
18138481 -TCTTGCGAATATATAA
1 TTCTTGTAAATCTAAAA
* *
18138497 TTCCTGCAAATCTAAAA
1 TTCTTGTAAATCTAAAA
* *
18138514 ATCTTGCAAAT
1 TTCTTGTAAAT
18138525 TTGTAAATCT
Statistics
Matches: 149, Mismatches: 39, Indels: 23
0.71 0.18 0.11
Matches are distributed among these distances:
16 21 0.14
17 90 0.60
18 34 0.23
19 4 0.03
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.39
Consensus pattern (17 bp):
TTCTTGTAAATCTAAAA
Found at i:18138588 original size:17 final size:17
Alignment explanation
Indices: 18138566--18138598 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18138556 ATCTTCAAAA
18138566 AAAATCTTATGAATTTG
1 AAAATCTTATGAATTTG
18138583 AAAATCTTATGAATTT
1 AAAATCTTATGAATTT
18138599 TTTAGTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (17 bp):
AAAATCTTATGAATTTG
Found at i:18139003 original size:3 final size:3
Alignment explanation
Indices: 18138995--18139038 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
18138985 AGTCCATTTG
18138995 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
18139039 CTGGAAATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.