Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167983.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44644
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.35
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:3107 original size:13 final size:12
Alignment explanation
Indices: 3089--3127 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
3079 ATTTTTTTAT
3089 TAAAAATATTAAA
1 TAAAAAT-TTAAA
3102 TAAAAATTTATAA
1 TAAAAATTTA-AA
*
3115 AAAAAATTTAAA
1 TAAAAATTTAAA
3127 T
1 T
3128 TGATGAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 5 0.22
13 18 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAAATTTAAA
Found at i:13122 original size:144 final size:144
Alignment explanation
Indices: 12839--13440 Score: 793
Period size: 144 Copynumber: 4.2 Consensus size: 144
12829 TTCGACATGC
* * *
12839 TTCCAATGGAAGCTGGGATTGAACCAGAGAAATTATTTTGATTCAACGCAAAGTGC-GTGAGAGA
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACGCAAAGT-CAGTGAGAGA
* * * * * *
12903 CTTAAGCATCCCTATCTCTTGAGGTATTGACCCAGAAAACATATTTTGATAAAGGTGGAG-AGTG
65 TTTAAGCATCCCTATCTCTTGAGGTATCGACCCAAAAAACATATTTTGATAGAGGTAGAGAAG-A
12967 GAT-AGACTGGTCAAGT
129 GATAAG-CTGGTCAAGT
* * *
12983 TTCCAATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACCCAACTCAAAGTCAGTGAGAGAT
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACGCAAAGTCAGTGAGAGAT
* * *
13048 TTAAGCATCCCTATCTCTTGAGGTATCGATCCAGAAAACATATTTTGGTAGAGGTAGAGAAGAGA
66 TTAAGCATCCCTATCTCTTGAGGTATCGACCCAAAAAACATATTTTGATAGAGGTAGAGAAGAGA
*
13113 TAAGTTGGTCAAGT
131 TAAGCTGGTCAAGT
* * * *
13127 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTCTGATTCAACGAAAATTCAGTGAGAGAT
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACGCAAAGTCAGTGAGAGAT
* * * *
13192 ATAAGCATCCCAATCTCTTTAGGTATTGACCCAAAAAACATATTTTGAT-GAAGGTAGAGAATG-
66 TTAAGCATCCCTATCTCTTGAGGTATCGACCCAAAAAACATATTTTGATAG-AGGTAGAGAA-GA
13255 GATAAGCTGGTCAAGT
129 GATAAGCTGGTCAAGT
* ** **
13271 TTCCTATAGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAAATCAAAAACAGTGAGAGAT
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACGCAAAGTCAGTGAGAGAT
* * * * *
13336 TTAAACATCCCTATCTCTTGAGGCATCGATCCAAAAAACATGTTTTGATAGAGGTAGAGAACAGA
66 TTAAGCATCCCTATCTCTTGAGGTATCGACCCAAAAAACATATTTTGATAGAGGTAGAGAAGAGA
13401 TAAG-TAGGTCAAGT
131 TAAGCT-GGTCAAGT
*
13415 TTCCTATGGAAGCAGGGATAGAACCA
1 TTCCTATGGAAGCAGGGATTGAACCA
13441 CGTAGATAGT
Statistics
Matches: 404, Mismatches: 46, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
143 3 0.01
144 395 0.98
145 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (144 bp):
TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACGCAAAGTCAGTGAGAGAT
TTAAGCATCCCTATCTCTTGAGGTATCGACCCAAAAAACATATTTTGATAGAGGTAGAGAAGAGA
TAAGCTGGTCAAGT
Found at i:13366 original size:288 final size:288
Alignment explanation
Indices: 12839--13440 Score: 931
Period size: 288 Copynumber: 2.1 Consensus size: 288
12829 TTCGACATGC
* * * *
12839 TTCCAATGGAAGCTGGGATTGAACCAGAGAAATTATTTTGATTCAACGCAAAGTGCGTGAGAGAC
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTCTGATTCAACGCAAAATGCGTGAGAGAC
* * * *
12904 TTAAGCATCCCTATCTCTTGAGGTATTGACCCAGAAAACATATTTTGATAAAGGTGGAGAGTGGA
66 TTAAGCATCCCAATCTCTTGAGGTATTGACCCAAAAAACATATTTTGATAAAGGTAGAGAATGGA
* *
12969 TAGACTGGTCAAGTTTCCAATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACCCAACTCAA
131 TAGACTGGTCAAGTTTCCAATAGAAGCAGGGATTGAACCAGAGAAATTATTTTGACCCAAATCAA
** * * * *
13034 AGTCAGTGAGAGATTTAAGCATCCCTATCTCTTGAGGTATCGATCCAGAAAACATATTTTGGTAG
196 AAACAGTGAGAGATTTAAACATCCCTATCTCTTGAGGCATCGATCCAAAAAACATATTTTGATAG
* *
13099 AGGTAGAGAAGAGATAAGTTGGTCAAGT
261 AGGTAGAGAACAGATAAGTAGGTCAAGT
*
13127 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTCTGATTCAACG-AAAATTCAGTGAGAGA
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTCTGATTCAACGCAAAATGC-GTGAGAGA
* *
13191 -TATAAGCATCCCAATCTCTTTAGGTATTGACCCAAAAAACATATTTTGATGAAGGTAGAGAATG
65 CT-TAAGCATCCCAATCTCTTGAGGTATTGACCCAAAAAACATATTTTGATAAAGGTAGAGAATG
* *
13255 GATA-AGCTGGTCAAGTTTCCTATAGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAAAT
129 GATAGA-CTGGTCAAGTTTCCAATAGAAGCAGGGATTGAACCAGAGAAATTATTTTGACCCAAAT
*
13319 CAAAAACAGTGAGAGATTTAAACATCCCTATCTCTTGAGGCATCGATCCAAAAAACATGTTTTGA
193 CAAAAACAGTGAGAGATTTAAACATCCCTATCTCTTGAGGCATCGATCCAAAAAACATATTTTGA
13384 TAGAGGTAGAGAACAGATAAGTAGGTCAAGT
258 TAGAGGTAGAGAACAGATAAGTAGGTCAAGT
*
13415 TTCCTATGGAAGCAGGGATAGAACCA
1 TTCCTATGGAAGCAGGGATTGAACCA
13441 CGTAGATAGT
Statistics
Matches: 286, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
287 7 0.02
288 279 0.98
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (288 bp):
TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTCTGATTCAACGCAAAATGCGTGAGAGAC
TTAAGCATCCCAATCTCTTGAGGTATTGACCCAAAAAACATATTTTGATAAAGGTAGAGAATGGA
TAGACTGGTCAAGTTTCCAATAGAAGCAGGGATTGAACCAGAGAAATTATTTTGACCCAAATCAA
AAACAGTGAGAGATTTAAACATCCCTATCTCTTGAGGCATCGATCCAAAAAACATATTTTGATAG
AGGTAGAGAACAGATAAGTAGGTCAAGT
Found at i:17433 original size:15 final size:15
Alignment explanation
Indices: 17413--17445 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17403 TTGATTTTTA
17413 TTTTTATTTAATCAT
1 TTTTTATTTAATCAT
*
17428 TTTTTATTTTATCAT
1 TTTTTATTTAATCAT
17443 TTT
1 TTT
17446 GAAATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTATTTAATCAT
Found at i:18078 original size:18 final size:18
Alignment explanation
Indices: 18051--18085 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18041 TATTTTATAA
*
18051 TAATATATTTATAAAAAT
1 TAATAAATTTATAAAAAT
*
18069 TAATAAATTTTTAAAAA
1 TAATAAATTTATAAAAA
18086 CTTTATGATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATAAATTTATAAAAAT
Found at i:18713 original size:20 final size:21
Alignment explanation
Indices: 18678--18726 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
18668 GAGTAGAAAT
* *
18678 ATAATATTATTTTTAATTTTA
1 ATAAAATTATTTTTAATCTTA
*
18699 TTAAAATTA-TTTTAATCTTA
1 ATAAAATTATTTTTAATCTTA
18719 ATAAAATT
1 ATAAAATT
18727 TTAAAGAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATAAAATTATTTTTAATCTTA
Found at i:20316 original size:12 final size:12
Alignment explanation
Indices: 20292--20325 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
20282 TTTAAAATAG
*
20292 AATTTAA-TAAT
1 AATTTAATTTAT
20303 AATTTAATTTAT
1 AATTTAATTTAT
20315 AATTTAATTTA
1 AATTTAATTTA
20326 ATTCATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTAT
Found at i:20348 original size:21 final size:21
Alignment explanation
Indices: 20324--20394 Score: 61
Period size: 21 Copynumber: 3.1 Consensus size: 21
20314 TAATTTAATT
20324 TAATTCATTTAAACAATAAGA
1 TAATTCATTTAAACAATAAGA
* * **
20345 TAATTAACTTTAAAATAGAATTAATT
1 TAATTCA-TTT--AA-ACAA-TAAGA
20371 TAATTCATTTAAACAATAAGA
1 TAATTCATTTAAACAATAAGA
20392 TAA
1 TAA
20395 CACCAATTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 12 0.32
22 6 0.16
23 2 0.05
24 2 0.05
25 6 0.16
26 9 0.24
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (21 bp):
TAATTCATTTAAACAATAAGA
Found at i:22605 original size:22 final size:21
Alignment explanation
Indices: 22579--22634 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 21
22569 TGTTAAACAA
*
22579 ATTTTAATTATTTAAAATTATT
1 ATTTT-ATTATTTAAAATAATT
22601 ATTTTA-T-TTTAAAATAATT
1 ATTTTATTATTTAAAATAATT
22620 ATTTTTATTATTTAA
1 A-TTTTATTATTTAA
22635 TTAATTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 12 0.40
20 6 0.20
21 2 0.07
22 10 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTTATTATTTAAAATAATT
Found at i:22630 original size:41 final size:42
Alignment explanation
Indices: 22578--22666 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 42
22568 ATGTTAAACA
*
22578 AATTTTAATTATTTAA-AATTATTATT-TTATTTTAAAATAAT
1 AATTTTAATTATTTAATAATT-TTATTCTTATTTTAAAAAAAT
* * *
22619 TATTTTTATTATTTAATTAATTTTATTCTTTTTTTAAAAAAAT
1 AATTTTAATTATTTAA-TAATTTTATTCTTATTTTAAAAAAAT
22662 AATTT
1 AATTT
22667 GATAAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 14 0.35
42 5 0.12
43 21 0.52
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (42 bp):
AATTTTAATTATTTAATAATTTTATTCTTATTTTAAAAAAAT
Found at i:22782 original size:19 final size:18
Alignment explanation
Indices: 22725--22783 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 18
22715 TGCCAGATAG
22725 ATAAAAATATAGTTT-AT
1 ATAAAAATATAGTTTAAT
*
22742 AT--AAA-ATAGTTTAGT
1 ATAAAAATATAGTTTAAT
*
22757 ACGAAAAATATAGTTTAAT
1 A-TAAAAATATAGTTTAAT
22776 ATTAAAAA
1 A-TAAAAA
22784 GATTACAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
14 7 0.22
15 5 0.16
17 2 0.06
18 3 0.09
19 15 0.47
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (18 bp):
ATAAAAATATAGTTTAAT
Found at i:35781 original size:89 final size:88
Alignment explanation
Indices: 35631--35812 Score: 301
Period size: 89 Copynumber: 2.1 Consensus size: 88
35621 ATATTGAAAA
35631 ATTAAGTGTTAAACTTCAAAGATTATTACACATTTGATACTTGAATTAGAGTAAAATTCTTTGAA
1 ATTAAGTGTTAAACTTCAAAGATTATTACACATTTGATACTTGAATTAGAGTAAAATTCTTTGAA
*
35696 ACTTAAATTTGAAAAGTTACAAT
66 ACTTAAATCTGAAAAGTTACAAT
* *
35719 ATTAAGTGTTAAACTTCGAAGATTAATTACGCATTTGATACTTGAATTAGAGTAAAATTCTTTGA
1 ATTAAGTGTTAAACTTCAAAGATT-ATTACACATTTGATACTTGAATTAGAGTAAAATTCTTTGA
* *
35784 TACTTAAATCTGAAAAGTTATAAT
65 AACTTAAATCTGAAAAGTTACAAT
*
35808 CTTAA
1 ATTAA
35813 TACTATTGTA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
88 23 0.26
89 64 0.74
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (88 bp):
ATTAAGTGTTAAACTTCAAAGATTATTACACATTTGATACTTGAATTAGAGTAAAATTCTTTGAA
ACTTAAATCTGAAAAGTTACAAT
Found at i:38163 original size:72 final size:72
Alignment explanation
Indices: 38087--38598 Score: 223
Period size: 72 Copynumber: 7.1 Consensus size: 72
38077 CCAGAAAACA
38087 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
1 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
38152 GAGAAAT
66 GAGAAAT
* * * ** * * * * *** **** *
38159 TATTATGACTCAA-CTGAAGGTTAGTGAGAGA-T--TTAAGCATCCCTATCTCTTG-AGGTATTG
1 TATTATGA-TGAAGGTAAAGAAT-G-GATAAACTGGTCAAG-TTTTTTAT-GAAAGCAGGGATTG
* *
38219 ACCCAGA-AAACA
61 AACCAGAGAAA-T
38231 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
1 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
38296 GAGAAAT
66 GAGAAAT
* * * ** * * * * *** **** *
38303 TATTATGACTCAA-CTGAAGGTTAGTGAGAGA-T--TTAAGCATCCCTATCTCTTG-AGGTATTG
1 TATTATGA-TGAAGGTAAAGAAT-G-GATAAACTGGTCAAG-TTTTTTAT-GAAAGCAGGGATTG
* *
38363 ACCCAGA-AAACA
61 AACCAGAGAAA-T
38375 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
1 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
38440 GAGAAAT
66 GAGAAAT
* * * ** * * * * *** **** *
38447 TATTATGACTCAA-CTGAAGGTTAGTGAGAGA-T--TTAAGCATCCCTATCTCTTG-AGGTATTG
1 TATTATGA-TGAAGGTAAAGAAT-G-GATAAACTGGTCAAG-TTTTTTAT-GAAAGCAGGGATTG
* *
38507 ACCCAGA-AAACA
61 AACCAGAGAAA-T
38519 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
1 TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
38584 GAGAAAT
66 GAGAAAT
38591 TATTATGA
1 TATTATGA
38599 CTCAACTCAA
Statistics
Matches: 290, Mismatches: 114, Indels: 72
0.61 0.24 0.15
Matches are distributed among these distances:
70 12 0.04
71 39 0.13
72 188 0.65
73 39 0.13
74 12 0.04
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (72 bp):
TATTATGATGAAGGTAAAGAATGGATAAACTGGTCAAGTTTTTTATGAAAGCAGGGATTGAACCA
GAGAAAT
Found at i:38703 original size:144 final size:144
Alignment explanation
Indices: 37698--38671 Score: 1492
Period size: 144 Copynumber: 6.8 Consensus size: 144
37688 ACATGTTTCC
* * *
37698 TATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGACTCAACTCAAAGTAAGTGAGAGATTTAA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
* * *
37763 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTTTGATTG-AGGTAGAGAGTGGATAA
66 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGA-TGAAGGTAAAGAATGGATAA
* * *
37827 GCTAGTCAAGTTTCCTG
130 ACTGGTCAAGTTT--TT
* * *
37844 T-TG-AAGCAGGGATTGAACCAGAGAAATTATTTTCA-TCCAACTTAAAGTCAGTGAGAGATTTA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACT-CAACTCAAAGTCAGTGAGAGATTTA
* * * *
37906 AGCATCCCTATCTCTTTAGGTATCAACCCAGAAAACATATTTTGATCG-AGGTAGAGAATGGATA
65 AGCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGAT-GAAGGTAAAGAATGGATA
* * **
37970 AGCTAGTCAAGTTTCC
129 AACTGGTCAAGTTTTT
* * *
37986 TATTG-AAGCAGGGATTGAACCAGAGAAATTATTTTCACCCAACTCAAAGTCAGTGAGAGATTTA
1 TA-TGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTA
*
38050 AGCATCCCTATCTCTTTAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAA
65 AGCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAA
38115 ACTGGTCAAGTTTTT
130 ACTGGTCAAGTTTTT
* * *
38130 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTGAAGGTTAGTGAGAGATTTAA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
*
38195 GCATCCCTATCTCTTGAGGTATTGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
66 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
38260 CTGGTCAAGTTTTT
131 CTGGTCAAGTTTTT
* * *
38274 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTGAAGGTTAGTGAGAGATTTAA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
*
38339 GCATCCCTATCTCTTGAGGTATTGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
66 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
38404 CTGGTCAAGTTTTT
131 CTGGTCAAGTTTTT
* * *
38418 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTGAAGGTTAGTGAGAGATTTAA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
*
38483 GCATCCCTATCTCTTGAGGTATTGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
66 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
38548 CTGGTCAAGTTTTT
131 CTGGTCAAGTTTTT
38562 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
1 TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
* * * *
38627 GCATCCCTATTTCTTGAGGTATCGATCCACAAAACATATTTTGAT
66 GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGAT
38672 AGAGGTGGAG
Statistics
Matches: 788, Mismatches: 33, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
142 1 0.00
143 5 0.01
144 779 0.99
145 2 0.00
146 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (144 bp):
TATGAAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGATTTAA
GCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGATGAAGGTAAAGAATGGATAAA
CTGGTCAAGTTTTT
Found at i:42807 original size:6 final size:6
Alignment explanation
Indices: 42798--42826 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
42788 CGGTTTTGAT
42798 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
42827 TCATTTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Done.