Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167841.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81219
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Found at i:821 original size:3 final size:3
Alignment explanation
Indices: 810--846 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
800 GTTGTTAAGG
*
810 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
847 TTAAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4136 original size:18 final size:18
Alignment explanation
Indices: 4101--4137 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
4091 TCATGATATA
*
4101 AAAAACTGATCTGCGCGT
1 AAAAACTGATCTACGCGT
*
4119 AAAAACTGATCTATGCGT
1 AAAAACTGATCTACGCGT
4137 A
1 A
4138 CGAACTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (18 bp):
AAAAACTGATCTACGCGT
Found at i:5865 original size:18 final size:19
Alignment explanation
Indices: 5824--5866 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
5814 ATATATATAT
* *
5824 ATATATATATATATTAATA
1 ATATATATATACATTAAGA
*
5843 TTATATA-ATACATTAAGA
1 ATATATATATACATTAAGA
5861 ATATAT
1 ATATAT
5867 TTGATGCGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
ATATATATATACATTAAGA
Found at i:5866 original size:2 final size:2
Alignment explanation
Indices: 5814--5849 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
5804 TTTTAATCCA
5814 AT AT AT AT AT AT AT AT AT AT AT AT -T A- AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5850 ATACATTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.10
2 28 0.90
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6982 original size:12 final size:13
Alignment explanation
Indices: 6954--6986 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6944 CTTAAAATTC
*
6954 TTAATTAAGAGAT
1 TTAATTAAGACAT
6967 TTAATTAA-ACAT
1 TTAATTAAGACAT
6979 TTAATTAA
1 TTAATTAA
6987 TTTTTATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (13 bp):
TTAATTAAGACAT
Found at i:7518 original size:20 final size:22
Alignment explanation
Indices: 7488--7535 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
7478 CTTAGTATTT
7488 ATTTATTTATTATTG-TTTTAC
1 ATTTATTTATTATTGCTTTTAC
*
7509 ATTT-TTTATTGTTGCTTTTA-
1 ATTTATTTATTATTGCTTTTAC
7529 A-TTATTT
1 ATTTATTT
7536 GTTTTTAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 2 0.08
20 13 0.54
21 9 0.38
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (22 bp):
ATTTATTTATTATTGCTTTTAC
Found at i:7621 original size:11 final size:11
Alignment explanation
Indices: 7607--7657 Score: 52
Period size: 10 Copynumber: 4.5 Consensus size: 11
7597 AACAAATAAC
7607 AAAAATAAAAT
1 AAAAATAAAAT
7618 -AAAATAAAATTT
1 AAAAATAAAA--T
7630 AAATAA-AAAAT
1 AAA-AATAAAAT
7641 AAAAATAAAAT
1 AAAAATAAAAT
7652 GAAAAA
1 -AAAAA
7658 AGAAAAACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
10 11 0.32
11 9 0.26
12 6 0.18
13 6 0.18
14 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:7641 original size:18 final size:19
Alignment explanation
Indices: 7607--7664 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 19
7597 AACAAATAAC
7607 AAAAATAAAAT---AAAAT
1 AAAAATAAAATGAAAAAAT
* *
7623 AAAATTTAAAT-AAAAAAT
1 AAAAATAAAATGAAAAAAT
*
7641 AAAAATAAAATGAAAAAAG
1 AAAAATAAAATGAAAAAAT
7660 AAAAA
1 AAAAA
7665 CTCATAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 9 0.26
18 14 0.41
19 11 0.32
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAATAAAATGAAAAAAT
Found at i:7645 original size:34 final size:36
Alignment explanation
Indices: 7588--7656 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 36
7578 TAAGTTGTAA
*
7588 AAAATCTTAAACAAATAACAAAAATAAAAT-AAAAT
1 AAAATCTTAAACAAAAAACAAAAATAAAATGAAAAT
* *
7623 AAAAT-TTAAATAAAAAATAAAAATAAAATGAAAA
1 AAAATCTTAAACAAAAAACAAAAATAAAATGAAAA
7657 AAGAAAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.74, C:0.04, G:0.01, T:0.20
Consensus pattern (36 bp):
AAAATCTTAAACAAAAAACAAAAATAAAATGAAAAT
Found at i:7932 original size:20 final size:20
Alignment explanation
Indices: 7904--7954 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7894 TTATTTATTT
7904 ATTTATTTATTATTG-TTTTA
1 ATTT-TTTATTATTGCTTTTA
*
7924 CATTTTTTATTGTTGCTTTTA
1 -ATTTTTTATTATTGCTTTTA
*
7945 ATTATTTATT
1 ATTTTTTATT
7955 TTTAGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (20 bp):
ATTTTTTATTATTGCTTTTA
Found at i:8076 original size:24 final size:22
Alignment explanation
Indices: 8020--8076 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
8010 AACGAATAAC
**
8020 AAAAATAAAATAAAATAAAATTT
1 AAAAA-AAAATAAAATAAAATCG
8043 AAATAAAAAATAAAAATAAAATCG
1 AAA-AAAAAAT-AAAATAAAATCG
8067 AAAAAGAAAA
1 AAAAA-AAAA
8077 ACTTATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.18
Consensus pattern (22 bp):
AAAAAAAAATAAAATAAAATCG
Found at i:8488 original size:9 final size:10
Alignment explanation
Indices: 8465--8494 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8455 GACGACCCCA
8465 AAAAATTTTC
1 AAAAATTTTC
8475 AAAAATTTTC
1 AAAAATTTTC
*
8485 AAAATTTTTC
1 AAAAATTTTC
8495 TTTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAAATTTTC
Found at i:9260 original size:44 final size:40
Alignment explanation
Indices: 9163--9261 Score: 99
Period size: 44 Copynumber: 2.4 Consensus size: 40
9153 TTATAAGCAT
* * * *
9163 AGGCTTGACAACTTTTGAAAATTTAAGCTCCTTTAAGTAG
1 AGGCTAGAAAACTTTTGAAAATTTAAGCTCCTCTAACTAG
* *
9203 AGGCTCGATAACTTTTGAAAATTTAAAAGGGCTCCTCTAACTAG
1 AGGCTAGAAAACTTTTGAAAATTT--AA--GCTCCTCTAACTAG
*
9247 AGGCTATAAAACTTT
1 AGGCTAGAAAACTTT
9262 AAATGGCTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 22 0.46
42 2 0.04
44 24 0.50
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (40 bp):
AGGCTAGAAAACTTTTGAAAATTTAAGCTCCTCTAACTAG
Found at i:9337 original size:75 final size:73
Alignment explanation
Indices: 9232--9413 Score: 184
Period size: 75 Copynumber: 2.5 Consensus size: 73
9222 AATTTAAAAG
* * * * * * * * * *
9232 GGCTCCTCTAACTAGAGGCTATAAAACTTTAAATGGCTATTTTGACCAGAGATACTGAAATTTTA
1 GGCTACTCTGACTAGAAGCAATGAAACTTTAAATGGCTACTTTGACAAGAGACAATGAAACTTTA
9297 AAATTTAAAA
66 AAA-TT-AAA
** * * * * *
9307 GGCTTTTTTGACTATAGGCAATGAAACTTTAAATGGCTCCTTTGACAAGAGGCAATGAAACTTTA
1 GGCTACTCTGACTAGAAGCAATGAAACTTTAAATGGCTACTTTGACAAGAGACAATGAAACTTTA
9372 AAATTAAA
66 AAATTAAA
*
9380 GGCTACTCTGACTAGAAGCTATGAAACTTTAAAT
1 GGCTACTCTGACTAGAAGCAATGAAACTTTAAAT
9414 TTAAAAAGTT
Statistics
Matches: 87, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
73 31 0.36
74 2 0.02
75 54 0.62
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (73 bp):
GGCTACTCTGACTAGAAGCAATGAAACTTTAAATGGCTACTTTGACAAGAGACAATGAAACTTTA
AAATTAAA
Found at i:9444 original size:40 final size:39
Alignment explanation
Indices: 9349--9453 Score: 104
Period size: 39 Copynumber: 2.7 Consensus size: 39
9339 ATGGCTCCTT
* * * *
9349 TGACAAGAGGCAATGAAACTTTAAAATTAAAGGCTACTC
1 TGACCAGAAGCAATGAAACTTTAAATTTAAAAGCTACTC
* * * *
9388 TGACTAGAAGCTATGAAACTTTAAATTTAAAAAGTTCCTC
1 TGACCAGAAGCAATGAAACTTTAAATTT-AAAAGCTACTC
*
9428 TGACCA-AAGACAATGAAGCTTTAAAT
1 TGACCAGAAG-CAATGAAACTTTAAAT
9454 GGCTCCTATA
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
39 27 0.50
40 27 0.50
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (39 bp):
TGACCAGAAGCAATGAAACTTTAAATTTAAAAGCTACTC
Found at i:12798 original size:38 final size:36
Alignment explanation
Indices: 12718--12806 Score: 117
Period size: 35 Copynumber: 2.4 Consensus size: 36
12708 GAATGTCAGA
*
12718 CAAATATATTAATTATTATGCAATAATAACAATCATG
1 CAAATATATTAA-TATTATGCAATAATAAAAATCATG
*
12755 TAAATATA-TAATATTATGCAATAATATAAAATACCATG
1 CAAATATATTAATATTATGCAATAATA-AAAAT--CATG
12793 CAAATATATTAATA
1 CAAATATATTAATA
12807 ACCATTCATG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
35 15 0.33
36 7 0.16
37 7 0.16
38 11 0.24
39 5 0.11
ACGTcount: A:0.52, C:0.09, G:0.04, T:0.35
Consensus pattern (36 bp):
CAAATATATTAATATTATGCAATAATAAAAATCATG
Found at i:13126 original size:77 final size:77
Alignment explanation
Indices: 13045--13203 Score: 205
Period size: 77 Copynumber: 2.1 Consensus size: 77
13035 ATAATCGTAC
* * * *
13045 AATCACATAAATAAATAAAACAATAATCATGCAATTAACAA-A-GTAAATCATGCAAATAAATAT
1 AATCACACAAATAAA-AAAA-AATAATCATGCAACTAACAATACATAAATCATGCAAATAAACAT
13108 GCAATTAAATATAT
64 GCAATTAAATATAT
* * * * *
13122 AATCATACAAATACAAATATATAATCATGCAACTAATAATACATAAATCATGCAAATAAACATGC
1 AATCACACAAATAAAAAAAAATAATCATGCAACTAACAATACATAAATCATGCAAATAAACATGC
13187 AATTAAATATAT
66 AATTAAATATAT
13199 AATCA
1 AATCA
13204 TGCAAAAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
75 17 0.24
76 4 0.06
77 50 0.70
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.26
Consensus pattern (77 bp):
AATCACACAAATAAAAAAAAATAATCATGCAACTAACAATACATAAATCATGCAAATAAACATGC
AATTAAATATAT
Found at i:13204 original size:77 final size:75
Alignment explanation
Indices: 13067--13209 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 75
13057 AAATAAAACA
* * *
13067 ATAATCATGCAATTAACAAAGTAAATCATGCAAATAAATATGCAATTAAATATATAATCATACAA
1 ATAATCATGCAACTAACAAAATAAATCATGCAAATAAACATGCAATTAAATATATAATCATACAA
13132 ATACAAATAT
66 ATACAAATAT
* *
13142 ATAATCATGCAACTAATAATACATAAATCATGCAAATAAACATGCAATTAAATATATAATCATGC
1 ATAATCATGCAACTAACAA-A-ATAAATCATGCAAATAAACATGCAATTAAATATATAATCATAC
13207 AAA
64 AAA
13210 AAAACATGCA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 17 0.28
76 1 0.02
77 43 0.70
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (75 bp):
ATAATCATGCAACTAACAAAATAAATCATGCAAATAAACATGCAATTAAATATATAATCATACAA
ATACAAATAT
Found at i:13205 original size:20 final size:20
Alignment explanation
Indices: 13106--13274 Score: 91
Period size: 22 Copynumber: 8.8 Consensus size: 20
13096 GCAAATAAAT
13106 ATGCAATTAAATATATAATC
1 ATGCAATTAAATATATAATC
* *
13126 ATACAAATACAAATATATAATC
1 ATGC-AAT-TAAATATATAATC
* *
13148 ATGCAACTAATAATACATAAATC
1 ATGCAA-TTA-AATATAT-AATC
13171 ATGC-----AA-ATA-AA-C
1 ATGCAATTAAATATATAATC
13183 ATGCAATTAAATATATAATC
1 ATGCAATTAAATATATAATC
13203 ATGC----AAA-A-A-AA-C
1 ATGCAATTAAATATATAATC
13215 ATGCAATTAAATATATAATC
1 ATGCAATTAAATATATAATC
*
13235 ATGCAAATAAATATATTAATAATC
1 ATGC-AATTAA-ATA-T-ATAATC
*
13259 AAGCAATTAAATATAT
1 ATGCAATTAAATATAT
13275 TAATAATCAT
Statistics
Matches: 115, Mismatches: 9, Indels: 50
0.66 0.05 0.29
Matches are distributed among these distances:
12 10 0.09
13 4 0.03
14 1 0.01
15 3 0.03
16 8 0.07
17 3 0.03
18 4 0.03
19 4 0.03
20 15 0.13
21 12 0.10
22 28 0.24
23 14 0.12
24 9 0.08
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (20 bp):
ATGCAATTAAATATATAATC
Found at i:13205 original size:32 final size:32
Alignment explanation
Indices: 13167--13245 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
13157 ATAATACATA
13167 AATCATGCAAATAAACATGCAATTAAATATAT
1 AATCATGCAAATAAACATGCAATTAAATATAT
*
13199 AATCATGCAAAAAAACATGCAATTAAATATAT
1 AATCATGCAAATAAACATGCAATTAAATATAT
13231 AATCATGCAAATAAA
1 AATCATGCAAATAAA
13246 TATATTAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.56, C:0.13, G:0.06, T:0.25
Consensus pattern (32 bp):
AATCATGCAAATAAACATGCAATTAAATATAT
Found at i:13245 original size:77 final size:78
Alignment explanation
Indices: 13083--13274 Score: 178
Period size: 77 Copynumber: 2.5 Consensus size: 78
13073 ATGCAATTAA
* * *
13083 CAAAGTAAATCATGCAAATAAATATGCAATTAAATATATAATCATACAAATACAAATATATAATC
1 CAAA-TAAATCATGCAAATAAACATGCAATTAAATATATAATCATACAAATACAAACATACAATC
**
13148 ATGCAACTAATAAT
65 AAACAACTAATAAT
* * * *
13162 -ACATAAATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAA-A-AAACATGCAATTA
1 CAAATAAATCATGCAAATAAACATGCAATTAAATATATAATCATACAAATACAAACATACAATCA
* *
13224 AATATA-TAATCAT
66 AACA-ACTAATAAT
*** * *
13237 GCAAATAAAT-ATATTAATAATCAAGCAATTAAATATAT
1 -CAAATAAATCATGCAAATAAACATGCAATTAAATATAT
13275 TAATAATCAT
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
75 16 0.17
76 25 0.27
77 50 0.54
78 2 0.02
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (78 bp):
CAAATAAATCATGCAAATAAACATGCAATTAAATATATAATCATACAAATACAAACATACAATCA
AACAACTAATAAT
Found at i:13256 original size:24 final size:24
Alignment explanation
Indices: 13229--13300 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
13219 AATTAAATAT
13229 ATAATCATGCAAATAAATATATTA
1 ATAATCATGCAAATAAATATATTA
* *
13253 ATAATCAAGCAATTAAATATATTA
1 ATAATCATGCAAATAAATATATTA
*
13277 ATAATCATGCAAACAAATATATTA
1 ATAATCATGCAAATAAATATATTA
13301 GGCAAGTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAATCATGCAAATAAATATATTA
Found at i:13344 original size:32 final size:33
Alignment explanation
Indices: 13280--13344 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
13270 TATATTAATA
*
13280 ATCATGCAAACAAATATATTAGGCAAGTAAATT
1 ATCATGCAAACAAATATATTAGGCAAGCAAATT
* * * *
13313 ATCATGCAAAGATA-ATATTAGTCATGCAAATT
1 ATCATGCAAACAAATATATTAGGCAAGCAAATT
13345 CATGAAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (33 bp):
ATCATGCAAACAAATATATTAGGCAAGCAAATT
Found at i:14296 original size:42 final size:41
Alignment explanation
Indices: 14228--14572 Score: 352
Period size: 42 Copynumber: 8.1 Consensus size: 41
14218 TTTTTTTTGA
* * * *
14228 AAAATACTCCCCCACAACTAAGGCTTTGGAACTTTTCAAAAT
1 AAAATGCTCCCTCACAACTAA-GCTTTGAAACTTTTGAAAAT
*
14270 AAAATGCTCCCTCACAATTGAAGCTTTGAAACTTTTGAAAAT
1 AAAATGCTCCCTCACAACT-AAGCTTTGAAACTTTTGAAAAT
*
14312 AAAATGCTCCCCCACAACTAAGGCTTTGAAAC-TTTGAAAAAT
1 AAAATGCTCCCTCACAACTAA-GCTTTGAAACTTTTG-AAAAT
* * *
14354 AAAATACTCCCTTACAACTGAGGCTTTGAAACTTTTGAAAAT
1 AAAATGCTCCCTCACAACT-AAGCTTTGAAACTTTTGAAAAT
* * * *
14396 AAAATGCT-CTTCCACAACTTAGGCTTTGGAATTTTTGAAAAAT
1 AAAATGCTCCCT-CACAAC-TAAGCTTTGAAACTTTTG-AAAAT
* * *
14439 AAAATGCTCCCACACAAGTGAGGCTTTGAAACTTTTGAAAAT
1 AAAATGCTCCCTCACAACT-AAGCTTTGAAACTTTTGAAAAT
* * * * * *
14481 AAAATACTCCTTCACAACTGAGGCTTTGGAACTTTTTAAAAAC
1 AAAATGCTCCCTCACAACT-AAGCTTTGAAAC-TTTTGAAAAT
*
14524 AAAATGCTCCCTTACAACTAAGGCTTTGAAACTTTTGGAAAAT
1 AAAATGCTCCCTCACAACTAA-GCTTTGAAACTTTT-GAAAAT
14567 AAAATG
1 AAAATG
14573 AGATTATTCT
Statistics
Matches: 255, Mismatches: 35, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
41 8 0.03
42 162 0.64
43 84 0.33
44 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (41 bp):
AAAATGCTCCCTCACAACTAAGCTTTGAAACTTTTGAAAAT
Found at i:14324 original size:84 final size:84
Alignment explanation
Indices: 14228--14572 Score: 458
Period size: 84 Copynumber: 4.1 Consensus size: 84
14218 TTTTTTTTGA
* * *
14228 AAAATACTCCCCCACAACTAAGGCTTTGGAACTTTTCAAAATAAAATGCTCCCTCACAATTGAAG
1 AAAATGCTCCCCCACAACTAAGGCTTTGGAACTTTTAAAAATAAAATGCTCCCTCACAACTGAAG
14293 CTTTGAAACTTTTGAAAAT
66 CTTTGAAACTTTTGAAAAT
* * * * *
14312 AAAATGCTCCCCCACAACTAAGGCTTTGAAACTTTGAAAAATAAAATACTCCCTTACAACTGAGG
1 AAAATGCTCCCCCACAACTAAGGCTTTGGAACTTTTAAAAATAAAATGCTCCCTCACAACTGAAG
14377 CTTTGAAACTTTTGAAAAT
66 CTTTGAAACTTTTGAAAAT
** * * * * *
14396 AAAATGCTCTTCCACAACTTAGGCTTTGGAATTTTTGAAAAATAAAATGCTCCCACACAAGTGAG
1 AAAATGCTCCCCCACAACTAAGGCTTTGGAACTTTT-AAAAATAAAATGCTCCCTCACAACTGAA
14461 GCTTTGAAACTTTTGAAAAT
65 GCTTTGAAACTTTTGAAAAT
* ** * * *
14481 AAAATACTCCTTCACAACTGAGGCTTTGGAACTTTTTAAAAACAAAATGCTCCCTTACAACT-AA
1 AAAATGCTCCCCCACAACTAAGGCTTTGGAAC-TTTTAAAAATAAAATGCTCCCTCACAACTGAA
14545 GGCTTTGAAACTTTTGGAAAAT
65 -GCTTTGAAACTTTT-GAAAAT
14567 AAAATG
1 AAAATG
14573 AGATTATTCT
Statistics
Matches: 228, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
84 107 0.47
85 106 0.46
86 15 0.07
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (84 bp):
AAAATGCTCCCCCACAACTAAGGCTTTGGAACTTTTAAAAATAAAATGCTCCCTCACAACTGAAG
CTTTGAAACTTTTGAAAAT
Found at i:14481 original size:85 final size:84
Alignment explanation
Indices: 14239--14572 Score: 454
Period size: 85 Copynumber: 3.9 Consensus size: 84
14229 AAATACTCCC
* * * *
14239 CCACAACTAAGGCTTTGGAACTTTTCAAAATAAAATGCTCCCTCACAATTGAAGCTTTGAAACTT
1 CCACAACTAAGGCTTTGGAATTTTTAAAAATAAAATGCTCCCTCACAACTGAGGCTTTGAAACTT
**
14304 TTGAAAATAAAATGCTCCC
66 TTGAAAATAAAATGCTCTT
* * * * *
14323 CCACAACTAAGGCTTTGAAACTTTGAAAAATAAAATACTCCCTTACAACTGAGGCTTTGAAACTT
1 CCACAACTAAGGCTTTGGAATTTTTAAAAATAAAATGCTCCCTCACAACTGAGGCTTTGAAACTT
14388 TTGAAAATAAAATGCTCTT
66 TTGAAAATAAAATGCTCTT
* * *
14407 CCACAACTTAGGCTTTGGAATTTTTGAAAAATAAAATGCTCCCACACAAGTGAGGCTTTGAAACT
1 CCACAACTAAGGCTTTGGAATTTTT-AAAAATAAAATGCTCCCTCACAACTGAGGCTTTGAAACT
*
14472 TTTGAAAATAAAATACTCCTT
65 TTTGAAAATAAAATGCT-CTT
* * * *
14493 -CACAACTGAGGCTTTGGAACTTTTTAAAAACAAAATGCTCCCTTACAACTAAGGCTTTGAAACT
1 CCACAACTAAGGCTTTGGAA-TTTTTAAAAATAAAATGCTCCCTCACAACTGAGGCTTTGAAACT
14557 TTTGGAAAATAAAATG
65 TTT-GAAAATAAAATG
14573 AGATTATTCT
Statistics
Matches: 221, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
84 96 0.43
85 106 0.48
86 19 0.09
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (84 bp):
CCACAACTAAGGCTTTGGAATTTTTAAAAATAAAATGCTCCCTCACAACTGAGGCTTTGAAACTT
TTGAAAATAAAATGCTCTT
Found at i:14762 original size:13 final size:13
Alignment explanation
Indices: 14744--14768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14734 TTCCAGATAT
14744 ATGCAATGAATGC
1 ATGCAATGAATGC
14757 ATGCAATGAATG
1 ATGCAATGAATG
14769 AAAAGATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
ATGCAATGAATGC
Found at i:22060 original size:22 final size:24
Alignment explanation
Indices: 22035--22079 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
22025 AACAATAATG
22035 TAAATATA-TAA-TATCATGCAAA
1 TAAATATATTAATTATCATGCAAA
22057 TAAATATATTAATTATCATGCAA
1 TAAATATATTAATTATCATGCAA
22080 TAATAACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (24 bp):
TAAATATATTAATTATCATGCAAA
Found at i:22068 original size:59 final size:59
Alignment explanation
Indices: 21999--22117 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
21989 CATGTCATGC
*
21999 AAATATATTAATTATCATACAATAATAACAATAATGTAAATATATAATATCATGCAAAT
1 AAATATATTAATTATCATACAATAATAACAATAATCTAAATATATAATATCATGCAAAT
*
22058 AAATATATTAATTATCATGCAATAATAACAATAATCTAAATATATAATATCATGCAAAT
1 AAATATATTAATTATCATACAATAATAACAATAATCTAAATATATAATATCATGCAAAT
22117 A
1 A
22118 TATTAACATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (59 bp):
AAATATATTAATTATCATACAATAATAACAATAATCTAAATATATAATATCATGCAAAT
Found at i:22309 original size:24 final size:22
Alignment explanation
Indices: 22281--22345 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 22
22271 TCATTCAAAA
22281 ATAATATTAATCATGCAATAACAT
1 ATAATA-TAATCATGCAATAA-AT
22305 ATAATATCATATCATGCAATAAAT
1 ATAATAT-A-ATCATGCAATAAAT
22329 AT--TA-AATCATGCAATAA
1 ATAATATAATCATGCAATAA
22346 TAATAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
19 12 0.31
20 1 0.03
22 2 0.05
23 1 0.03
24 11 0.28
25 12 0.31
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (22 bp):
ATAATATAATCATGCAATAAAT
Found at i:22321 original size:25 final size:24
Alignment explanation
Indices: 22281--22338 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
22271 TCATTCAAAA
*
22281 ATAATATTA-ATCATGCAATAACAT
1 ATAATATCATATCATGCAATAA-AT
22305 ATAATATCATATCATGCAATAAAT
1 ATAATATCATATCATGCAATAAAT
22329 ATTAA-ATCAT
1 A-TAATATCAT
22339 GCAATAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 16 0.52
25 15 0.48
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.34
Consensus pattern (24 bp):
ATAATATCATATCATGCAATAAAT
Found at i:22476 original size:20 final size:20
Alignment explanation
Indices: 22453--22515 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 20
22443 AATTATACAA
22453 ATAAACATGCAATTAAATAT
1 ATAAACATGCAATTAAATAT
* *
22473 ATAATCATGCAAATAAAAATAT
1 ATAAACATGC-AAT-TAAATAT
*
22495 ATAAACCATGCAAATAAATAT
1 ATAAA-CATGCAATTAAATAT
22516 GCAATTAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 9 0.26
21 9 0.26
22 12 0.34
23 5 0.14
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (20 bp):
ATAAACATGCAATTAAATAT
Found at i:22495 original size:22 final size:23
Alignment explanation
Indices: 22467--22512 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
22457 ACATGCAATT
*
22467 AAATATAT-AATCATGCAAATAA
1 AAATATATAAACCATGCAAATAA
22489 AAATATATAAACCATGCAAATAA
1 AAATATATAAACCATGCAAATAA
22512 A
1 A
22513 TATGCAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.24
Consensus pattern (23 bp):
AAATATATAAACCATGCAAATAA
Found at i:22519 original size:55 final size:55
Alignment explanation
Indices: 22450--22599 Score: 237
Period size: 55 Copynumber: 2.7 Consensus size: 55
22440 GTAAATTATA
*
22450 CAAATAAACATGCAATTAAATATATAATCATGCAAATAAAAATATATAAACCATG
1 CAAATAAACATGCAATTAAATATATAATCATGCAAATAAAAATACATAAACCATG
* * * * * *
22505 CAAATAAATATGCAATTAAATATATAATCATGCAACTTATAATGCATAAATCATG
1 CAAATAAACATGCAATTAAATATATAATCATGCAAATAAAAATACATAAACCATG
22560 CAAATAAACATGCAATTAAATATATAATCATGCAAATAAA
1 CAAATAAACATGCAATTAAATATATAATCATGCAAATAAA
22600 TATAATCATA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 84 1.00
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (55 bp):
CAAATAAACATGCAATTAAATATATAATCATGCAAATAAAAATACATAAACCATG
Found at i:22537 original size:20 final size:20
Alignment explanation
Indices: 22453--22603 Score: 87
Period size: 20 Copynumber: 8.1 Consensus size: 20
22443 AATTATACAA
*
22453 ATAAACATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
* *
22473 ATAATCATGCAAATAAAAAT
1 ATAATCATGCAATTAAATAT
** * **
22493 AT-AT-AAACCATGCAA-AT
1 ATAATCATGCAATTAAATAT
22510 A-AAT-ATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
22528 ATAATCATGCAACTTATAATGCAT
1 ATAATCATGCAA-TTA-AAT--AT
22552 A-AATCATGC-----AA-AT
1 ATAATCATGCAATTAAATAT
22565 A-AA-CATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
*
22583 ATAATCATGCAAATAAATAT
1 ATAATCATGCAATTAAATAT
22603 A
1 A
22604 ATCATACCAA
Statistics
Matches: 100, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
12 5 0.05
13 5 0.05
16 2 0.02
17 13 0.13
18 11 0.11
19 7 0.07
20 40 0.40
21 3 0.03
22 3 0.03
23 8 0.08
24 3 0.03
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.28
Consensus pattern (20 bp):
ATAATCATGCAATTAAATAT
Found at i:22604 original size:18 final size:18
Alignment explanation
Indices: 22581--22621 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
22571 GCAATTAAAT
*
22581 ATATAATCATGCAAATAA
1 ATATAATCATACAAATAA
*
22599 ATATAATCATACCAATAA
1 ATATAATCATACAAATAA
22617 ATATA
1 ATATA
22622 TTAATAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (18 bp):
ATATAATCATACAAATAA
Found at i:22633 original size:42 final size:43
Alignment explanation
Indices: 22576--22687 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 43
22566 AACATGCAAT
*
22576 TAAATAT-ATAATCATGCAAATAAATATAAT-CAT-ACCAATAAA
1 TAAATATAATAATCATGCAAATAAATATAATAAATCA-CAA-AAA
* *
22618 TATAT-TAATAATCATGCAAATATAT-TAATAAATCACAAAAA
1 TAAATATAATAATCATGCAAATAAATATAATAAATCACAAAAA
* *
22659 TAAATATATTAATCATGCAAACAAATATA
1 TAAATATAATAATCATGCAAATAAATATA
22688 TTAGGCAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
41 12 0.21
42 43 0.74
43 3 0.05
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.30
Consensus pattern (43 bp):
TAAATATAATAATCATGCAAATAAATATAATAAATCACAAAAA
Found at i:22659 original size:21 final size:20
Alignment explanation
Indices: 22615--22660 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
22605 TCATACCAAT
***
22615 AAATATATTAATAATCATGC
1 AAATATATTAATAATCACAA
22635 AAATATATTAATAAATCACAA
1 AAATATATTAAT-AATCACAA
22656 AAATA
1 AAATA
22661 AATATATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATATATTAATAATCACAA
Found at i:22684 original size:21 final size:21
Alignment explanation
Indices: 22568--22690 Score: 94
Period size: 21 Copynumber: 5.9 Consensus size: 21
22558 TGCAAATAAA
*
22568 CATGCAATTAAATATA-TAAT
1 CATGCAAATAAATATATTAAT
22588 CATGCAAAT-AA-ATA-TAAT
1 CATGCAAATAAATATATTAAT
* *
22606 CATACCAATAAATATATTAATAAT
1 CATGCAAATAAATATA-T--TAAT
* *
22630 CATGCAAATATAT-TAATAAAT
1 CATGCAAATAAATAT-ATTAAT
***
22651 CACAAAAATAAATATATTAAT
1 CATGCAAATAAATATATTAAT
*
22672 CATGCAAACAAATATATTA
1 CATGCAAATAAATATATTA
22691 GGCAAATAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 15
0.72 0.15 0.14
Matches are distributed among these distances:
18 14 0.18
19 4 0.05
20 11 0.14
21 32 0.41
22 1 0.01
23 2 0.03
24 15 0.19
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.31
Consensus pattern (21 bp):
CATGCAAATAAATATATTAAT
Found at i:23350 original size:12 final size:13
Alignment explanation
Indices: 23333--23367 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
23323 ACTAAAAAAT
*
23333 AAAAATTAAAC-C
1 AAAAATTAAACTA
23345 AAAAATTAAACTA
1 AAAAATTAAACTA
23358 AAAAATTAAA
1 AAAAATTAAA
23368 ATACAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAATTAAACTA
Found at i:23375 original size:13 final size:12
Alignment explanation
Indices: 23328--23375 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
23318 TTTTGACTAA
23328 AAAATAAAAATT
1 AAAATAAAAATT
**
23340 AAACCAAAAATT
1 AAAATAAAAATT
*
23352 AAACTAAAAAATT
1 AAAAT-AAAAATT
23365 AAAATACAAAA
1 AAAATA-AAAA
23376 AAAAAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 15 0.50
13 15 0.50
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAATAAAAATT
Found at i:23375 original size:14 final size:14
Alignment explanation
Indices: 23344--23376 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23334 AAAATTAAAC
*
23344 CAAAAATTAAACTA
1 CAAAAATTAAAATA
23358 -AAAAATTAAAATA
1 CAAAAATTAAAATA
23371 CAAAAA
1 CAAAAA
23377 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (14 bp):
CAAAAATTAAAATA
Found at i:33537 original size:8 final size:8
Alignment explanation
Indices: 33512--33567 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
33502 ATCTTAAATG
33512 AATAACAAA
1 AATAA-AAA
33521 AAT--AAA
1 AATAAAAA
33527 AATAAAAA
1 AATAAAAA
33535 AATAAAATA
1 AATAAAA-A
33544 AA-AAAAA
1 AATAAAAA
*
33551 AAGAAAAA
1 AATAAAAA
*
33559 AAGAAAAA
1 AATAAAAA
33567 A
1 A
33568 TTACAAATGG
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
6 6 0.14
7 3 0.07
8 28 0.65
9 6 0.14
ACGTcount: A:0.86, C:0.02, G:0.04, T:0.09
Consensus pattern (8 bp):
AATAAAAA
Found at i:33537 original size:14 final size:13
Alignment explanation
Indices: 33512--33549 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
33502 ATCTTAAATG
33512 AATAACAAAAATAAA
1 AATAA-AAAAAT-AA
33527 AATAAAAAAATAA
1 AATAAAAAAATAA
33540 AATAAAAAAA
1 AATAAAAAAA
33550 AAAGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.52
14 6 0.26
15 5 0.22
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (13 bp):
AATAAAAAAATAA
Found at i:33550 original size:14 final size:14
Alignment explanation
Indices: 33512--33550 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
33502 ATCTTAAATG
*
33512 AATAACAAAAATAA
1 AATAAAAAAAATAA
33526 AA-ATAAAAAAATAA
1 AATA-AAAAAAATAA
33540 AATAAAAAAAA
1 AATAAAAAAAA
33551 AAGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 1 0.05
14 20 0.91
15 1 0.05
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (14 bp):
AATAAAAAAAATAA
Found at i:33567 original size:19 final size:18
Alignment explanation
Indices: 33518--33567 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
33508 AATGAATAAC
33518 AAAAATAAAAATAAAAAAA
1 AAAAATAAAAA-AAAAAAA
*
33537 TAAAATAAAAAAAAAAGAA
1 AAAAATAAAAAAAAAA-AA
*
33556 AAAAAGAAAAAA
1 AAAAATAAAAAA
33568 TTACAAATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (18 bp):
AAAAATAAAAAAAAAAAA
Found at i:36491 original size:44 final size:44
Alignment explanation
Indices: 36395--36502 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
36385 TGATCGCCTA
* * *
36395 ACATGACATGACTTTTTATTTTAACCCAAATTGCCAGTTGTCTTT
1 ACATAACATGACTTTTAATTTTAACCC-AATTGCCAATTGTCTTT
* ** *
36440 GCATAACATGACTTTTAATTTTAACCTC-ATTGTTAATTGTTTTT
1 ACATAACATGACTTTTAATTTTAACC-CAATTGCCAATTGTCTTT
*
36484 ACATAACATGACCTTTAAT
1 ACATAACATGACTTTTAAT
36503 ATTGTTAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
44 29 0.55
45 23 0.43
46 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.44
Consensus pattern (44 bp):
ACATAACATGACTTTTAATTTTAACCCAATTGCCAATTGTCTTT
Found at i:39689 original size:15 final size:14
Alignment explanation
Indices: 39669--39698 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
39659 CCTGTCTCCC
39669 TATTTTTTTGTGTTT
1 TATTTTTTT-TGTTT
39684 TATTTTTTTTGTTT
1 TATTTTTTTTGTTT
39698 T
1 T
39699 GCGCTCACGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (14 bp):
TATTTTTTTTGTTT
Found at i:40571 original size:3 final size:3
Alignment explanation
Indices: 40563--40588 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
40553 ATTAATTCTA
40563 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
40589 ATGACTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:44229 original size:30 final size:32
Alignment explanation
Indices: 44166--44239 Score: 98
Period size: 30 Copynumber: 2.3 Consensus size: 32
44156 CCTGTCTAGA
44166 TAATTGGCACCTAGATGAGATCTAAGCCCAGTT
1 TAATTGGCA-CTAGATGAGATCTAAGCCCAGTT
* **
44199 TAGTTGGCAC-AGATGAGAT-TAAGCTTAGTT
1 TAATTGGCACTAGATGAGATCTAAGCCCAGTT
44229 TAATTGGCACT
1 TAATTGGCACT
44240 CAAATGACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 18 0.50
31 9 0.25
32 1 0.03
33 8 0.22
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (32 bp):
TAATTGGCACTAGATGAGATCTAAGCCCAGTT
Found at i:44484 original size:97 final size:93
Alignment explanation
Indices: 44329--44502 Score: 240
Period size: 97 Copynumber: 1.8 Consensus size: 93
44319 GCTTTCAAAT
* * *
44329 ATGAGATTTTAAACTTTTAAAATTGTTCAAGAGGAGCTTTCAAAGATGAAATGTTTAAAGTTTTA
1 ATGAGATTTTAAACTTTTAAAATTGTTCAAAAAGAGCTTTCAAAGATGAAATGTTTAAAATTTTA
44394 AAGCCTTTGTTTAAGAAGAGTTTTTGGG
66 AAGCCTTTGTTTAAGAAGAGTTTTTGGG
* * * *
44422 ATGAGATTTTAAAGTTTTAAAGACTCTGTTCAAAAAGAGGCTTTCAAATATGAGATTTTTAAAAT
1 ATGAGATTTTAAACTTTTAAA-A-T-TGTTCAAAAAGA-GCTTTCAAAGATGAAATGTTTAAAAT
*
44487 TTTAAAGCTTTTGTTT
62 TTTAAAGCCTTTGTTT
44503 TGGAGGAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 20 0.29
94 1 0.01
95 1 0.01
96 10 0.14
97 37 0.54
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (93 bp):
ATGAGATTTTAAACTTTTAAAATTGTTCAAAAAGAGCTTTCAAAGATGAAATGTTTAAAATTTTA
AAGCCTTTGTTTAAGAAGAGTTTTTGGG
Found at i:44569 original size:49 final size:48
Alignment explanation
Indices: 44318--44636 Score: 181
Period size: 50 Copynumber: 6.6 Consensus size: 48
44308 CAAATGTTAA
* * *
44318 AGCTTTCAAATATGAGATTTTAAACTTTTAAAA--T-TGTTCAAGAGG
1 AGCTTTCAAAGATGAGATTTTAAAGTTTTAAAACTTCTGTTCATGAGG
* * * * *
44363 AGCTTTCAAAGATGAAATGTTTAAAGTTTTAAAGCCTT-TGTTTAAGAAG
1 AGCTTTCAAAGATGAGAT-TTTAAAGTTTTAAA-ACTTCTGTTCATGAGG
**** ** *
44412 AG-TTTTTGGGATGAGATTTTAAAGTTTTAAAGAC-TCTGTTCAAAAAG
1 AGCTTTCAAAGATGAGATTTTAAAGTTTTAAA-ACTTCTGTTCATGAGG
* * * * *
44459 AGGCTTTCAAATATGAGATTTTTAAAATTTTAAAGCTTTTGTT-TTGGAGG
1 A-GCTTTCAAAGATGAGA-TTTTAAAGTTTTAAAACTTCTGTTCAT-GAGG
** * *
44509 AATTTTTCAAAGATGAGATTTTAAAGTTTCAAATCTTCTGTTCATGAGG
1 -AGCTTTCAAAGATGAGATTTTAAAGTTTTAAAACTTCTGTTCATGAGG
* * * *
44558 AGCTTTCCAAAGATG-GAACTTTTAAA-TATTTAAAGCCTCTGTTCAAGAGA
1 AGCTTT-CAAAGATGAG-A-TTTTAAAGT-TTTAAAACTTCTGTTCATGAGG
*
44608 AGCTTTTTC-AGGATGAGATTTTTAAAGTT
1 AGC--TTTCAAAGATGAGA-TTTTAAAGTT
44637 GTAGAGATTT
Statistics
Matches: 211, Mismatches: 43, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
45 16 0.08
46 14 0.07
47 26 0.12
48 16 0.08
49 56 0.27
50 76 0.36
51 4 0.02
52 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (48 bp):
AGCTTTCAAAGATGAGATTTTAAAGTTTTAAAACTTCTGTTCATGAGG
Found at i:44581 original size:99 final size:95
Alignment explanation
Indices: 44321--44636 Score: 284
Period size: 99 Copynumber: 3.3 Consensus size: 95
44311 ATGTTAAAGC
* * *
44321 TTTCAAATATGAGATTTTAAACTTTTAAAAT-TGTTCAAGAGGAGCTTTCAAAGATGAAATGTTT
1 TTTCAAAGATGAGATTTTAAAGTTTTAAACTCTGTTCAAGAGGAGCTTTCAAAGATGAAAT-TTT
* *
44385 AAAGTTTTAAAGCCTTTGTTTAAGAAGAGTT
65 AAAATTTTAAAGCCTTTGTTTAAGAAGAATT
** * * * *
44416 TTT--GGGATGAGATTTTAAAGTTTTAAAGACTCTGTTCAAAAAGAGGCTTTCAAATATGAGATT
1 TTTCAAAGATGAGATTTTAAAGTTTT-AA-ACTCTGTTCAAGAGGA-GCTTTCAAAGATGA-AAT
* ** *
44479 TTTAAAATTTTAAAGCTTTTGTTTTGGAGGAATT
62 TTTAAAATTTTAAAGCCTTTGTTTAAGAAGAATT
* * *
44513 TTTCAAAGATGAGATTTTAAAGTTTCAAATCTTCTGTTCATGAGGAGCTTTCCAAAGATGGAACT
1 TTTCAAAGATGAGATTTTAAAGTTTTAAA-C-TCTGTTCAAGAGGAGCTTT-CAAAGAT-GAAAT
* *
44578 TTT-AAATATTTAAAGCCTCTGTTCAAG-AGAAGCTT
62 TTTAAAAT-TTTAAAGCCTTTGTTTAAGAAGAA--TT
*
44613 TTTC-AGGATGAGATTTTTAAAGTT
1 TTTCAAAGATGAGA-TTTTAAAGTT
44637 GTAGAGATTT
Statistics
Matches: 176, Mismatches: 30, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
93 17 0.10
94 2 0.01
95 5 0.03
96 10 0.06
97 45 0.26
98 17 0.10
99 62 0.35
100 18 0.10
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (95 bp):
TTTCAAAGATGAGATTTTAAAGTTTTAAACTCTGTTCAAGAGGAGCTTTCAAAGATGAAATTTTA
AAATTTTAAAGCCTTTGTTTAAGAAGAATT
Found at i:44827 original size:86 final size:88
Alignment explanation
Indices: 44664--44829 Score: 210
Period size: 86 Copynumber: 1.9 Consensus size: 88
44654 AAGAGATTTT
* * * * * * *
44664 AAATTTATTTTTAAAAGTTGTTAAGTTTTAAAGGAGTTTTTAAAATTTATTTTCAAATGTTATTG
1 AAATTTACTTTCAAAAGTTGTGAAGCTTTAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTATTA
*
44729 AGCCTTTACTTAAAGTAGCTTTG
66 AACCTTTACTTAAAGTAGCTTTG
* * *
44752 AAATTTACTTTCAAAAGTTGTGGAGCTTT-AAGGAGCTTTT-GAATTTATTTTCAAAAGTTGTTA
1 AAATTTACTTTCAAAAGTTGTGAAGCTTTAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTATTA
*
44815 AACCTTTGCTTAAAG
66 AACCTTTACTTAAAG
44830 GAGTTTTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
86 32 0.48
87 10 0.15
88 24 0.36
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.45
Consensus pattern (88 bp):
AAATTTACTTTCAAAAGTTGTGAAGCTTTAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTATTA
AACCTTTACTTAAAGTAGCTTTG
Found at i:44859 original size:133 final size:128
Alignment explanation
Indices: 44660--44910 Score: 333
Period size: 133 Copynumber: 1.9 Consensus size: 128
44650 GTAAAAGAGA
* *
44660 TTTTAAATTTATTTTTAAAAGTTGTTAAGTTTTAAAGGAGTTTTTAAAATTTATTTTCAAATGTT
1 TTTTAAATTTATTTTCAAAAGTTGTTAAGTTTTAAAGGAGTTTTTAAAATTTATTTTCAAAAGTT
* *
44725 ATTGAGCCTTTACTTAAAGTAGCTT-TGAAATTTACTTTCAAAAGTTGTGGAGCTTTAAGGAGC
66 ATTGAGCATTTACTTAAAGGAGCTTGT-AAATTTACTTTCAAAAGTTGTGGAGCTTTAAGGAGC
* * * *
44788 TTTTGAATTTATTTTCAAAAGTTGTTAAACCTTTGCTTAAAGGAGTTTTTAAAATTTGTTTTGAA
1 TTTTAAATTTATTTTCAAAAGTTGTT-AA--GTT--TTAAAGGAGTTTTTAAAATTTATTTTCAA
** * *
44853 AAGTTATTGAGCATTTGTTTAAAGGAGCTTGTAAGTTTATTTTCAAAAGTTGTGGAGC
61 AAGTTATTGAGCATTTACTTAAAGGAGCTTGTAAATTTACTTTCAAAAGTTGTGGAGC
44911 ATCTGTTAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
128 24 0.23
129 2 0.02
131 2 0.02
133 76 0.72
134 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (128 bp):
TTTTAAATTTATTTTCAAAAGTTGTTAAGTTTTAAAGGAGTTTTTAAAATTTATTTTCAAAAGTT
ATTGAGCATTTACTTAAAGGAGCTTGTAAATTTACTTTCAAAAGTTGTGGAGCTTTAAGGAGC
Found at i:44911 original size:46 final size:47
Alignment explanation
Indices: 44651--44917 Score: 186
Period size: 46 Copynumber: 6.0 Consensus size: 47
44641 AGATTTTACG
* * * *
44651 TAAAAGAGATTTT-AAATTTATTTTTAAAAGTTGTT-A--A-GT-TT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
* * * * **
44692 TAAAGGAGTTTTTAAAATTTATTTTCAAATGTTATTGAGCCTTTACT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
* * * *
44739 TAAAGTAGC-TTTGAAATTTACTTTCAAAAGTTGTGGAGC-----TT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
* * * * *
44780 T-AAGGAGCTTTT-GAATTTATTTTCAAAAGTTGTTAAACCTTTGCT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
* * * *
44825 TAAAGGAGTTTTTAAAATTTGTTTTGAAAAGTTATTGAGCATTTGTT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
* * * *
44872 TAAAGGAGCTTGT-AAGTTTATTTTCAAAAGTTGTGGAGCATCTGTT
1 TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
44918 AAGAGAAGTT
Statistics
Matches: 172, Mismatches: 40, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
40 27 0.16
41 16 0.09
42 19 0.11
43 1 0.01
45 2 0.01
46 63 0.37
47 44 0.26
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (47 bp):
TAAAGGAGCTTTTAAAATTTATTTTCAAAAGTTGTTGAGCATTTGTT
Found at i:44990 original size:17 final size:17
Alignment explanation
Indices: 44953--45019 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
44943 AAAAGATTTT
* *
44953 AAAAATAAAAAAAACTC
1 AAAAATAAAAAAATCTA
44970 AAAAATAAAAAAATCTAAA
1 AAAAATAAAAAAATCT--A
*
44989 AAAAATGAAAAAAATTTA
1 AAAAAT-AAAAAAATCTA
**
45007 AAATGTAAAAAAA
1 AAAAATAAAAAAA
45020 GGTAGAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
17 22 0.52
18 5 0.12
19 6 0.14
20 9 0.21
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAAATAAAAAAATCTA
Found at i:44993 original size:20 final size:20
Alignment explanation
Indices: 44970--45009 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
44960 AAAAAAACTC
44970 AAAAAT-AAAAAAATCTAAA
1 AAAAATGAAAAAAATCTAAA
*
44989 AAAAATGAAAAAAATTTAAA
1 AAAAATGAAAAAAATCTAAA
45009 A
1 A
45010 TGTAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (20 bp):
AAAAATGAAAAAAATCTAAA
Found at i:47086 original size:26 final size:25
Alignment explanation
Indices: 47057--47109 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
47047 GTAGGGACCT
*
47057 AATTGGACCCATTTTGGTCTAAGCCC
1 AATTGGACCCATTCTGGTC-AAGCCC
*
47083 AATTGGGCCCATTCTGGTCAAGCCC
1 AATTGGACCCATTCTGGTCAAGCCC
47108 AA
1 AA
47110 CTATACGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (25 bp):
AATTGGACCCATTCTGGTCAAGCCC
Found at i:47527 original size:21 final size:20
Alignment explanation
Indices: 47475--47523 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
47465 ATTAATTTGT
47475 GGTTCTAG-GAGTGAATTCAG
1 GGTTCTAGAG-GTGAATTCAG
*
47495 GTTTCTAGAGGTGAATTCAG
1 GGTTCTAGAGGTGAATTCAG
*
47515 GGTTGTAGA
1 GGTTCTAGA
47524 AGGTTTGGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.35, T:0.33
Consensus pattern (20 bp):
GGTTCTAGAGGTGAATTCAG
Found at i:47637 original size:19 final size:19
Alignment explanation
Indices: 47615--47651 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
47605 TGGGTTTGGT
47615 TGAATTTTCTGACGAAGTA
1 TGAATTTTCTGACGAAGTA
* *
47634 TGAATTTTTTGATGAAGT
1 TGAATTTTCTGACGAAGT
47652 TTCAGAGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (19 bp):
TGAATTTTCTGACGAAGTA
Found at i:48062 original size:18 final size:18
Alignment explanation
Indices: 48035--48073 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
48025 AGGTTTTCTC
* *
48035 TTTTTCATTTTATTTTAT
1 TTTTTCATTTGATTTGAT
*
48053 TTTTTGATTTGATTTGAT
1 TTTTTCATTTGATTTGAT
48071 TTT
1 TTT
48074 ATTTCTAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (18 bp):
TTTTTCATTTGATTTGAT
Found at i:59604 original size:119 final size:118
Alignment explanation
Indices: 59129--59639 Score: 439
Period size: 118 Copynumber: 4.3 Consensus size: 118
59119 TTATTTGCCT
* *
59129 ACTTGATCTTGGCTCAGTCCAGATCATTTCTA-ATGATTCATGGTTTCATCTTGATCATTTATTT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTATATGATTCATGGTTTCATCCTGATCATTTATTT
* * * * *
59193 TTGACTTCGACTCGGTCTTGGTCACCTCATTTGATTCATGGTTTCATCCCGATC
66 TTGACCTCGACTCGATCTTGGTCACTTTATTTGATT-ATGGTTTCATCTCGATC
* * * * * * * *
59247 GCATGATCTTAGCTCAGTCTAGATCATTTCT-TATGATTCATGGTTTCGTCCTAATCATTTATCT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTATATGATTCATGGTTTCATCCTGATCATTTATTT
* * * * * *
59311 TTGACCTCGACTCGATCCTGGTC-GTCTTATTTGACTTGTGGTTTCGTCTCGGTT
66 TTGACCTCGACTCGATCTTGGTCACT-TTATTTGA-TTATGGTTTCATCTCGATC
* * * * * * *
59365 GCATGAT-TTGACTT-AGTCTAGATCATTT-TTTATGATTCGTGGTTTCGTCCTGATCATTTATT
1 ACTTGATCTTG-GTTCAGTCCAGATCATTTCTATATGATTCATGGTTTCATCCTGATCATTTATT
** * * * ** * *
59427 TTCAACCTCGACTC-AGTTTTGGTCGCTTTATTTTGGCTTATGGTTTGGTTTAGATC
65 TTTGACCTCGACTCGA-TCTTGGTCACTTTA-TTT-GATTATGGTTTCATCTCGATC
* * * * *
59483 ACTTGATCTTGGTTCAGTCGAGATCATCTCTAT-TGATTCGTGATTTTAT-CTCGATCATTTATT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTATATGATTCATGGTTTCATCCT-GATCATTTATT
* * * *
59546 TTTGACTTTGACTCGATCTTGGTCACTTTATTTCGATTCGTGGTTTCATCTCGGTC
65 TTTGACCTCGACTCGATCTTGGTCACTTTATTT-GATT-ATGGTTTCATCTCGATC
*
59602 ACTTAATCTTGGTTCAGTCCAGATCATTTCT-TATGATT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTATATGATT
59640 TGTGGCTCTG
Statistics
Matches: 314, Mismatches: 63, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
116 2 0.01
117 66 0.21
118 135 0.43
119 108 0.34
120 3 0.01
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.45
Consensus pattern (118 bp):
ACTTGATCTTGGTTCAGTCCAGATCATTTCTATATGATTCATGGTTTCATCCTGATCATTTATTT
TTGACCTCGACTCGATCTTGGTCACTTTATTTGATTATGGTTTCATCTCGATC
Found at i:59659 original size:119 final size:117
Alignment explanation
Indices: 59129--59682 Score: 472
Period size: 119 Copynumber: 4.7 Consensus size: 117
59119 TTATTTGCCT
* * * *
59129 ACTTGATCTTGGCTCAGTCCAGATCATTTCTAATGATTCATGGTTTCATCTTGATCATTTATTTT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCGTCTTGATCATTTATTTT
* * * * *
59194 TGACTTCGACTCGGTCTTGGTCACCTCATTTGATTCATGGTTTCATCCCGATC
66 TGACCTCGACTCGATCTTGGTCACTTTATTTGATT-ATGGTTTCATCTCGATC
* * * * * * * * *
59247 GCATGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCGTCCTAATCATTTATCTT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCGTCTTGATCATTTATTTT
* * * * * *
59312 TGACCTCGACTCGATCCTGGTC-GTCTTATTTGACTTGTGGTTTCGTCTCGGTT
66 TGACCTCGACTCGATCTTGGTCACT-TTATTTGA-TTATGGTTTCATCTCGATC
* * * * * *
59365 GCATGAT-TTGACTT-AGTCTAGATCATTTTTTATGATTCGTGGTTTCGTCCTGATCATTTATTT
1 ACTTGATCTTG-GTTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCGTCTTGATCATTTATTT
** * * * ** * *
59428 TCAACCTCGACTC-AGTTTTGGTCGCTTTATTTTGGCTTATGGTTTGGTTTAGATC
65 TTGACCTCGACTCGA-TCTTGGTCACTTTA-TTT-GATTATGGTTTCATCTCGATC
* * * ** *
59483 ACTTGATCTTGGTTCAGTCGAGATCATCTC-TATTGATTCGTGATTTTATCTCGATCATTTATTT
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTTA-TGATTCGTGGTTTCGTCTTGATCATTTATTT
* * * *
59547 TTGACTTTGACTCGATCTTGGTCACTTTATTTCGATTCGTGGTTTCATCTCGGTC
65 TTGACCTCGACTCGATCTTGGTCACTTTATTT-GATT-ATGGTTTCATCTCGATC
* * * * *
59602 ACTTAATCTTGGTTCAGTCCAGATCATTTCTTATGATTTGTGG-CTCTGTCTTAATCATTTATTC
1 ACTTGATCTTGGTTCAGTCCAGATCATTTCTTATGATTCGTGGTTTC-GTCTTGATCATTTATTT
*
59666 TTGACCTCGACTTGATC
65 TTGACCTCGACTCGATC
59683 CCGATCGCTT
Statistics
Matches: 344, Mismatches: 78, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
116 1 0.00
117 67 0.19
118 135 0.39
119 138 0.40
120 3 0.01
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.45
Consensus pattern (117 bp):
ACTTGATCTTGGTTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCGTCTTGATCATTTATTTT
TGACCTCGACTCGATCTTGGTCACTTTATTTGATTATGGTTTCATCTCGATC
Found at i:59857 original size:24 final size:24
Alignment explanation
Indices: 59825--59893 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
59815 AGAGGGGCAG
*
59825 TTGTAGACACCTATTTTGGTCTTA
1 TTGTAGACACTTATTTTGGTCTTA
*
59849 TTGTAGACACTTATTTTTGTCTTA
1 TTGTAGACACTTATTTTGGTCTTA
*
59873 CTGTAGACACTTATTTTGGTC
1 TTGTAGACACTTATTTTGGTC
59894 CGAGCCTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (24 bp):
TTGTAGACACTTATTTTGGTCTTA
Found at i:59962 original size:26 final size:26
Alignment explanation
Indices: 59885--59981 Score: 79
Period size: 26 Copynumber: 3.8 Consensus size: 26
59875 GTAGACACTT
* * * * *
59885 ATTTTGGTCCGAGCCTAATTGGACCA
1 ATTTTGGTCCAAGCCCAACTGGGCCC
*** * *
59911 ATTTTGGTCTGGGCCCAATTGTGCCC
1 ATTTTGGTCCAAGCCCAACTGGGCCC
59937 ATTTTGGTCCAAGCCCAACTGGGCCC
1 ATTTTGGTCCAAGCCCAACTGGGCCC
* *
59963 ATTCTGGT-CAAGCTCAACT
1 ATTTTGGTCCAAGCCCAACT
59982 ATACACCATT
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
25 10 0.17
26 48 0.83
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.30
Consensus pattern (26 bp):
ATTTTGGTCCAAGCCCAACTGGGCCC
Found at i:60044 original size:3 final size:3
Alignment explanation
Indices: 60036--60094 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
60026 TTAGATAATT
* *
60036 TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
60084 TTG TTA TTA TT
1 TTA TTA TTA TT
60095 TTTTTATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:60107 original size:11 final size:11
Alignment explanation
Indices: 60033--60111 Score: 50
Period size: 12 Copynumber: 6.8 Consensus size: 11
60023 CAATTAGATA
*
60033 ATTTTATTATT
1 ATTTTTTTATT
* *
60044 ATTATTATTAGT
1 ATT-TTTTTATT
*
60056 ATTATTATTATT
1 ATT-TTTTTATT
* *
60068 ATTATTATTACT
1 ATT-TTTTTATT
*
60080 ATTATTGTTATT
1 ATT-TTTTTATT
60092 ATTTTTTTATT
1 ATTTTTTTATT
*
60103 TTTTTTTTA
1 ATTTTTTTA
60112 CTCAACCTGC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
11 18 0.30
12 42 0.70
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.70
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:63867 original size:16 final size:16
Alignment explanation
Indices: 63835--63873 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
63825 GTTTGATTGA
*
63835 ATTTGTTTTATATTTC
1 ATTTTTTTTATATTTC
63851 ATGTTTTTTTATA-TTC
1 AT-TTTTTTTATATTTC
63867 ATTTTTT
1 ATTTTTT
63874 AAATTTCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 7 0.33
17 9 0.43
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (16 bp):
ATTTTTTTTATATTTC
Found at i:70599 original size:29 final size:28
Alignment explanation
Indices: 70462--70651 Score: 99
Period size: 29 Copynumber: 6.7 Consensus size: 28
70452 ATTTTAGTTG
70462 GCACA-AATTTTAAG-CTCAGTTTAGCTA
1 GCACAGAATTTTAAGCCT-AGTTTAGCTA
*
70489 GCACTTAG-A--TTAAGCCTAGTTTAG-TT
1 GCAC--AGAATTTTAAGCCTAGTTTAGCTA
*
70515 G-ACACGTAGATTTTAAGCCTAGTTTAGCTG
1 GCACA-G-A-ATTTTAAGCCTAGTTTAGCTA
* ** * **
70545 GCACACAAACCTGAAGCCTAAATTAGCTA
1 GCACA-GAATTTTAAGCCTAGTTTAGCTA
* *
70574 GCATCAGAATTTTAAGCCTAGTTTAGATG
1 GCA-CAGAATTTTAAGCCTAGTTTAGCTA
* * *
70603 GCACATAGATTTTAAATCC-AGTTTAGTTA
1 GCACAGA-ATTTT-AAGCCTAGTTTAGCTA
*
70632 GCACATAGATTTTAAGCCTA
1 GCACAGA-ATTTTAAGCCTA
70652 AATTAGATGG
Statistics
Matches: 125, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
23 1 0.01
24 1 0.01
25 2 0.02
26 2 0.02
27 17 0.14
28 9 0.07
29 80 0.64
30 9 0.07
31 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (28 bp):
GCACAGAATTTTAAGCCTAGTTTAGCTA
Found at i:70657 original size:29 final size:29
Alignment explanation
Indices: 70558--70664 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 29
70548 CACAAACCTG
* *
70558 AAGCCTAAATTAGCTAGCATCAGA-ATTTT
1 AAGCCTAAATTAGATAGCA-CATAGATTTT
** *
70587 AAGCCTAGTTTAGATGGCACATAGATTTT
1 AAGCCTAAATTAGATAGCACATAGATTTT
* ** *
70616 AAATCC-AGTTTAGTTAGCACATAGATTTT
1 -AAGCCTAAATTAGATAGCACATAGATTTT
*
70645 AAGCCTAAATTAGATGGCAC
1 AAGCCTAAATTAGATAGCAC
70665 TTTAAGCTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
28 7 0.11
29 51 0.82
30 4 0.06
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (29 bp):
AAGCCTAAATTAGATAGCACATAGATTTT
Found at i:74112 original size:23 final size:23
Alignment explanation
Indices: 74084--74187 Score: 70
Period size: 23 Copynumber: 4.5 Consensus size: 23
74074 CCATAAAACC
74084 TGAAACCCTAAAACTCGAAATCT
1 TGAAACCCTAAAACTCGAAATCT
* **
74107 T-AAAACCTCAAAACTTTAAAT-T
1 TGAAACCCT-AAAACTCGAAATCT
* **
74129 CTGAAACCTTAAAACCTTAAAATC-
1 -TGAAACCCTAAAA-CTCGAAATCT
* * *
74153 TCAAATCCTAAAACTCGAAACCT
1 TGAAACCCTAAAACTCGAAATCT
*
74176 TGAAATCCTAAA
1 TGAAACCCTAAA
74188 CCTTAAAACT
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
22 13 0.21
23 37 0.60
24 12 0.19
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.25
Consensus pattern (23 bp):
TGAAACCCTAAAACTCGAAATCT
Found at i:74145 original size:8 final size:8
Alignment explanation
Indices: 74046--74245 Score: 85
Period size: 8 Copynumber: 25.6 Consensus size: 8
74036 CATTTTTCTC
*
74046 AAAACCCT
1 AAAACCTT
* *
74054 AGAACCCT
1 AAAACCTT
*
74062 AAAAACTT
1 AAAACCTT
*
74070 AAAACCAT
1 AAAACCTT
74078 AAAACC-T
1 AAAACCTT
* *
74085 GAAACCCT
1 AAAACCTT
*
74093 AAAA-CTC
1 AAAACCTT
* *
74100 GAAATCTT
1 AAAACCTT
*
74108 AAAACCTC
1 AAAACCTT
*
74116 AAAACTTT
1 AAAACCTT
**
74124 AAATTC-T
1 AAAACCTT
*
74131 GAAACCTT
1 AAAACCTT
74139 AAAACCTT
1 AAAACCTT
* *
74147 AAAATCTC
1 AAAACCTT
*
74155 AAATCC-T
1 AAAACCTT
*
74162 AAAA-CTC
1 AAAACCTT
*
74169 GAAACCTT
1 AAAACCTT
*
74177 GAAATCC-T
1 -AAAACCTT
74185 -AAACCTT
1 AAAACCTT
74192 AAAA-CTT
1 AAAACCTT
*
74199 CAAAATCTT
1 -AAAACCTT
74208 -AAACCTTT
1 AAAACC-TT
*
74216 GAAACCTT
1 AAAACCTT
74224 AAAACCCTT
1 AAAA-CCTT
*
74233 AAAACCCT
1 AAAACCTT
74241 AAAAC
1 AAAAC
74246 TCCCAAACCT
Statistics
Matches: 140, Mismatches: 39, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
6 5 0.04
7 28 0.20
8 87 0.62
9 20 0.14
ACGTcount: A:0.47, C:0.26, G:0.04, T:0.23
Consensus pattern (8 bp):
AAAACCTT
Found at i:74196 original size:23 final size:23
Alignment explanation
Indices: 74140--74245 Score: 72
Period size: 23 Copynumber: 4.5 Consensus size: 23
74130 TGAAACCTTA
* *
74140 AAACCTTAAAATC-TCAAATCCT
1 AAACCTTAAAACCTTAAAATCCT
* ** *
74162 AAAACTCGAAACCTTGAAATCCT
1 AAACCTTAAAACCTTAAAATCCT
*
74185 AAACCTTAAAA-CTTCAAAATCTT
1 AAACCTTAAAACCTT-AAAATCCT
* *
74208 AAACCTTTGAAACCTTAAAACCCTT
1 AAACC-TTAAAACCTTAAAATCC-T
*
74233 AAAACCCTAAAAC
1 -AAACCTTAAAAC
74246 TCCCAAACCT
Statistics
Matches: 63, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
22 12 0.19
23 27 0.43
24 10 0.16
25 9 0.14
26 5 0.08
ACGTcount: A:0.46, C:0.26, G:0.03, T:0.25
Consensus pattern (23 bp):
AAACCTTAAAACCTTAAAATCCT
Found at i:74224 original size:16 final size:16
Alignment explanation
Indices: 74108--74270 Score: 79
Period size: 16 Copynumber: 10.4 Consensus size: 16
74098 TCGAAATCTT
* *
74108 AAAACCTCAAAACTTT
1 AAAACCTTAAAACTTC
** * *
74124 AAATTCTGAAACCTT-
1 AAAACCTTAAAACTTC
74139 AAAACCTTAAAA-TCTC
1 AAAACCTTAAAACT-TC
*
74155 AAATCC-TAAAAC-TC
1 AAAACCTTAAAACTTC
* * *
74169 GAAACCTTGAAA-TCC
1 AAAACCTTAAAACTTC
*
74184 TAAACCTTAAAACTTC
1 AAAACCTTAAAACTTC
* * *
74200 AAAATCTTAAACCTTT
1 AAAACCTTAAAACTTC
*
74216 GAAACCTTAAAACCCTT-
1 AAAACCTTAAAA--CTTC
* *
74233 AAAACCCTAAAACTCC
1 AAAACCTTAAAACTTC
*
74249 CAAACCTTAGAAACTT-
1 AAAACCTTA-AAACTTC
74265 AAAACC
1 AAAACC
74271 CAGAAATCCA
Statistics
Matches: 107, Mismatches: 30, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
14 7 0.07
15 31 0.29
16 51 0.48
17 15 0.14
18 3 0.03
ACGTcount: A:0.46, C:0.26, G:0.03, T:0.25
Consensus pattern (16 bp):
AAAACCTTAAAACTTC
Found at i:76740 original size:8 final size:8
Alignment explanation
Indices: 76717--76764 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
76707 AATGTTAGAG
76717 AATT-AAA
1 AATTAAAA
76724 AATTAAAAA
1 AATT-AAAA
*
76733 AAATAAAA
1 AATTAAAA
76741 AATTAAAA
1 AATTAAAA
76749 AATT--AA
1 AATTAAAA
76755 AATTAAAA
1 AATTAAAA
76763 AA
1 AA
76765 ATTCCTTCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
6 6 0.17
7 4 0.11
8 19 0.54
9 6 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATTAAAA
Found at i:76741 original size:16 final size:16
Alignment explanation
Indices: 76720--76765 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
76710 GTTAGAGAAT
76720 TAAAAATTAAAAAAAA
1 TAAAAATTAAAAAAAA
76736 TAAAAAATT--AAAAAA
1 T-AAAAATTAAAAAAAA
*
76751 TTAAAATTAAAAAAA
1 TAAAAATTAAAAAAA
76766 TTCCTTCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.23
15 7 0.27
16 6 0.23
17 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAAAATTAAAAAAAA
Found at i:78928 original size:42 final size:42
Alignment explanation
Indices: 78847--78951 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 42
78837 TTAGCTAACA
78847 TGACATGACTTTTAATTTTAACCCCATTGTTACTTGTCTTTACAC
1 TGACATGACTTTTAA--TTAACCCCATTGTTACTTGTCTTTAC-C
*
78892 -GACATGACTTTTAATTAATCCCATTGTT-CATTGTCTTTACC
1 TGACATGACTTTTAATTAACCCCATTGTTAC-TTGTCTTTACC
*
78933 TGACATGCCTTTTATATTA
1 TGACATGACTTTTA-ATTA
78952 TCAAAGACAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
41 2 0.04
42 35 0.64
43 4 0.07
44 14 0.25
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.45
Consensus pattern (42 bp):
TGACATGACTTTTAATTAACCCCATTGTTACTTGTCTTTACC
Found at i:79287 original size:213 final size:214
Alignment explanation
Indices: 78892--79383 Score: 572
Period size: 213 Copynumber: 2.3 Consensus size: 214
78882 GTCTTTACAC
* * * * * *
78892 GACATGACTTTTAA--TTAATCCCATTGTTCATTGTCTTTACCTGACATG-CCTTTTATATTATC
1 GACATGACTTTTAATTTTAATCCCGTTGTTAATTGTCTTTACATGACATGATCTTTAATATTATT
* * *
78954 AAA-GACATGATTTAATATTTTCAATTAATTATTTAAGATTTTTTATACATAATTTAATAATTGT
66 AAATGACACGATTTAATATTTTCAATTAATTATTTAAGATTTTTTAGACATAATTTAATAATTAT
* * *
79018 TAAATCTTTATACAACTATTAAAAGTGTTTAAGGATAATAGACAAAAAAATAAAATTTTTACCGA
131 TAAATCTTTATACAACTATTAAAAATATTTAAGGATAATAGACAAAAAAATAAAA-TTTTACAGA
* ** *
79083 TAGTTTTTA-CACCTATCAT
195 TAATTTCCATCACCTAACAT
*
79102 GATATGACTTTTAATTTTAA-CCCTGTTGTTAATTGTCTTTACATGACATGATCTTTAATATT-T
1 GACATGACTTTTAATTTTAATCCC-GTTGTTAATTGTCTTTACATGACATGATCTTTAATATTAT
* * *
79165 TAAATGATACGATTTAATATTTTCAATTAATTATTTAA-TTTCTTTTAGACATGATTTAAT-ATT
65 TAAATGACACGATTTAATATTTTCAATTAATTATTTAAGATT-TTTTAGACATAATTTAATAATT
* * * *
79228 ATTAAATCTTTATACATA-TATTAAAAATATTTAAGTATAATTGACAACAATATTAAAATTTTAC
129 ATTAAATCTTTATACA-ACTATTAAAAATATTTAAGGATAATAGACAA-AAAAATAAAATTTTAC
* *
79292 AGTTAATTTCCATCACCTAACCT
192 AGATAATTTCCATCACCTAACAT
* ** * * * *
79315 GACATGATTTTTAATTTTAATAACGTTGTTAGTTATCTTTACATGACATGATTTTTAATATTGTT
1 GACATGACTTTTAATTTTAATCCCGTTGTTAATTGTCTTTACATGACATGATCTTTAATATTATT
79380 AAAT
66 AAAT
79384 ATTATGATGA
Statistics
Matches: 238, Mismatches: 33, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
210 13 0.05
211 3 0.01
212 89 0.37
213 126 0.53
214 7 0.03
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (214 bp):
GACATGACTTTTAATTTTAATCCCGTTGTTAATTGTCTTTACATGACATGATCTTTAATATTATT
AAATGACACGATTTAATATTTTCAATTAATTATTTAAGATTTTTTAGACATAATTTAATAATTAT
TAAATCTTTATACAACTATTAAAAATATTTAAGGATAATAGACAAAAAAATAAAATTTTACAGAT
AATTTCCATCACCTAACAT
Found at i:79299 original size:467 final size:453
Alignment explanation
Indices: 78280--79373 Score: 1211
Period size: 467 Copynumber: 2.3 Consensus size: 453
78270 TGCTATGACA
* * * * * * * *
78280 ATGATTTAATATTGTCACATCTTTAAAAATCTATTAAAAATGTCTGAGGATGATTGACTACAACA
1 ATGATTTAATATTGTTACATCTTTATACATATATTAAAAATGT-TTAAGATAATTGACAACAACA
* * *
78345 TTAAAATTTTACAGTTAGTTTCCATTAGCTAACATGACATGACTTTTAATTTCAACCCTTTGTTA
65 TTAAAATTTTACAGTTAATTTCCATTAGCTAACATGACATGACTTTTAATTTTAACCCATTGTTA
* *
78410 ATTGTCTTTACATGACATGATTTTTAATTTTAATCTCATTGTTAATTGACATTCCTTTAATATTG
130 ATTGTCTTTACATGACATGATTTTTAA--TTAATCCCATTGTTAATTGACATTCC-TTAACATTG
* * *
78475 TCGACAAATCATAAGATGATGACATGATTTAATATTTTCAATTGATTATTTAAGAGTTTTATACA
192 TC-ACAAATCATAAGATAAAGACATGATTTAATATTTTCAATTAATTATTTAAGAGTTTTATACA
* *
78540 TGATTAATATTGTTAAATCTTTATACAACTATTAAAAGTGTTTAAGGATTATAGACAAAAAATAA
256 TAATTAATATTGTTAAATCTTTATACAACTATTAAAAGTGTTTAAGGATAATAGACAAAAAATAA
*
78605 ATTTTTTACCATTAATTTACATGACTTTTAATTTTAACACCATTGTTAATTATCTTTACATGACA
321 AATTTTTACCATTAATTTACATGACTTTTAATTTTAACACCATTGTTAATTATCTTTACATGACA
*
78670 TGAGCATTAATATTGTTAAATCTTTTGATGATGATATGATTTAATATTTTCAATTAATTATTTAA
386 TGAGCATTAATATTGTT-AA-----T-A-GATGATACGATTTAATATTTTCAATTAATTATTT-A
78735 GAATTTCTTACAC
442 -AATTTCTTACAC
* * * *
78748 ACGATTTAATATTGTTACATCTTTATACATTTATTAAAAGTGTTTAACGATAATTAACAACAACA
1 ATGATTTAATATTGTTACATCTTTATACATATATTAAAAATGTTTAA-GATAATTGACAACAACA
* *
78813 TTAAAATTCTACGGTTAATTTCCATTAGCTAACATGACATGACTTTTAATTTTAACCCCATTGTT
65 TTAAAATTTTACAGTTAATTTCCATTAGCTAACATGACATGACTTTTAATTTTAA-CCCATTGTT
* * * * * * *
78878 ACTTGTCTTTACACGACATGACTTTTAATTAATCCCATTGTTCATTGTCTTTACC-TGACA-TG-
129 AATTGTCTTTACATGACATGATTTTTAATTAATCCCATTGTTAATTGACATT-CCTTAACATTGT
** * ** *
78940 C-C-TTTTATATTATCAAAGACATGATTTAATATTTTCAATTAATTATTTAAGATTTTTTATACA
193 CACAAATCATAAGAT-AAAGACATGATTTAATATTTTCAATTAATTATTTAAGA-GTTTTATACA
79003 TAATTTAATAATTGTTAAATCTTTATACAACTATTAAAAGTGTTTAAGGATAATAGACAAAAAAA
256 TAA-TTAAT-ATTGTTAAATCTTTATACAACTATTAAAAGTGTTTAAGGATAATAGAC-AAAAAA
* *
79068 TAAAATTTTTACCGATAGTTTTTACACCTATCATGATATGACTTTTAATTTTAAC-CCTGTTGTT
318 TAAAATTTTTACC---A----TTA-A--T-T--T-ACATGACTTTTAATTTTAACACC-ATTGTT
* * *
79132 AATTGTCTTTACATGACATGATCTTTAATATT-TT-A-A-ATGATACGATTTAATATTTTCAATT
368 AATTATCTTTACATGACATGAGCATTAATATTGTTAATAGATGATACGATTTAATATTTTCAATT
*
79193 AATTATTT-AATTTCTTTTAGAC
433 AATTATTTAAATTTC--TTACAC
* * * *
79215 ATGATTTAATATTATTAAATCTTTATACATATATTAAAAATATTTAAGTATAATTGACAACAATA
1 ATGATTTAATATTGTTACATCTTTATACATATATTAAAAATGTTTAAG-ATAATTGACAACAACA
* * * * ** *
79280 TTAAAATTTTACAGTTAATTTCCATCACCTAACCTGACATGATTTTTAATTTTAATAACGTTGTT
65 TTAAAATTTTACAGTTAATTTCCATTAGCTAACATGACATGACTTTTAATTTTAA-CCCATTGTT
* *
79345 AGTTATCTTTACATGACATGATTTTTAAT
129 AATTGTCTTTACATGACATGATTTTTAAT
79374 ATTGTTAAAT
Statistics
Matches: 534, Mismatches: 66, Indels: 53
0.82 0.10 0.08
Matches are distributed among these distances:
461 6 0.01
462 36 0.07
463 11 0.02
464 6 0.01
465 55 0.10
466 22 0.04
467 162 0.30
468 136 0.25
469 34 0.06
470 1 0.00
473 3 0.01
474 1 0.00
476 1 0.00
477 2 0.00
479 5 0.01
480 53 0.10
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (453 bp):
ATGATTTAATATTGTTACATCTTTATACATATATTAAAAATGTTTAAGATAATTGACAACAACAT
TAAAATTTTACAGTTAATTTCCATTAGCTAACATGACATGACTTTTAATTTTAACCCATTGTTAA
TTGTCTTTACATGACATGATTTTTAATTAATCCCATTGTTAATTGACATTCCTTAACATTGTCAC
AAATCATAAGATAAAGACATGATTTAATATTTTCAATTAATTATTTAAGAGTTTTATACATAATT
AATATTGTTAAATCTTTATACAACTATTAAAAGTGTTTAAGGATAATAGACAAAAAATAAAATTT
TTACCATTAATTTACATGACTTTTAATTTTAACACCATTGTTAATTATCTTTACATGACATGAGC
ATTAATATTGTTAATAGATGATACGATTTAATATTTTCAATTAATTATTTAAATTTCTTACAC
Found at i:79926 original size:28 final size:26
Alignment explanation
Indices: 79873--79925 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
79863 GCAAAATAGT
79873 TATATTTAATAATTAAAAAATAAAAA
1 TATATTTAATAATTAAAAAATAAAAA
*
79899 TATATTATAAATAATT-GAAAATAAAAA
1 TATATT-T-AATAATTAAAAAATAAAAA
79926 AAAATCAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
27 11 0.46
28 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
TATATTTAATAATTAAAAAATAAAAA
Done.