Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167985.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44384
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Found at i:587 original size:17 final size:18
Alignment explanation
Indices: 567--602 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
557 CTATGTGGTC
567 TTCATATT-ATTTTCCTT
1 TTCATATTAATTTTCCTT
*
584 TTCATTTTAATTTTCCTT
1 TTCATATTAATTTTCCTT
602 T
1 T
603 ATCGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCATATTAATTTTCCTT
Found at i:1494 original size:10 final size:11
Alignment explanation
Indices: 1463--1491 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
1453 TTTGTTTTGA
1463 TAAATTTAATT
1 TAAATTTAATT
1474 T-AATTTAATT
1 TAAATTTAATT
1484 TAAATTTA
1 TAAATTTA
1492 TTTGATCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAAATTTAATT
Found at i:3745 original size:33 final size:34
Alignment explanation
Indices: 3703--3772 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
3693 TTTTGGTGCC
* *
3703 TTGACTTTGTTT-CTTTTTTGGCGTATGAGCATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
*
3736 TTGACTTTGTTTCCCTTTGTGGCGTATGAGTATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
3770 TTG
1 TTG
3773 CCAGAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.14, C:0.13, G:0.23, T:0.50
Consensus pattern (34 bp):
TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
Found at i:4381 original size:36 final size:36
Alignment explanation
Indices: 4334--4412 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
4324 GTTTGATGAG
4334 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
* *
4370 GCTCCTGAGACATCCTCAAGCCGTGGTGGGGTGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
4406 GCTCCTG
1 GCTCCTG
4413 GAGCCACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (36 bp):
GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
Found at i:4729 original size:133 final size:133
Alignment explanation
Indices: 4491--4755 Score: 521
Period size: 133 Copynumber: 2.0 Consensus size: 133
4481 GACCTTCGGA
4491 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
4556 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
66 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
4621 CCG
131 CCG
*
4624 CCATGTTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
4689 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
66 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
4754 CC
131 CC
4756 ATTTTGGTTA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (133 bp):
CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
CCG
Found at i:6948 original size:17 final size:18
Alignment explanation
Indices: 6928--6964 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6918 CTATGTGGTC
6928 TTCATATT-ATTTTCCTT
1 TTCATATTAATTTTCCTT
*
6945 TTCATTTTAATTTTCCTT
1 TTCATATTAATTTTCCTT
6963 TT
1 TT
6965 ATCGAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCATATTAATTTTCCTT
Found at i:7853 original size:10 final size:11
Alignment explanation
Indices: 7822--7850 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
7812 TTTGTTTTGA
7822 TAAATTTAATT
1 TAAATTTAATT
7833 T-AATTTAATT
1 TAAATTTAATT
7843 TAAATTTA
1 TAAATTTA
7851 TTTGATCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAAATTTAATT
Found at i:10107 original size:33 final size:34
Alignment explanation
Indices: 10065--10134 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
10055 TTTTGGTGCC
* *
10065 TTGACTTTGTTT-CTTTTTTGGCGTATGAGCATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
*
10098 TTGACTTTGTTTCCCTTTGTGGCGTATGAGTATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
10132 TTG
1 TTG
10135 CCAGAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.14, C:0.13, G:0.23, T:0.50
Consensus pattern (34 bp):
TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
Found at i:10744 original size:36 final size:36
Alignment explanation
Indices: 10697--10775 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
10687 GTTTGATGAG
10697 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
* *
10733 GCTCCTGAGACATCCTCAAGCCGTGGTGGGGTGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
10769 GCTCCTG
1 GCTCCTG
10776 GAGCCACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (36 bp):
GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
Found at i:11092 original size:133 final size:133
Alignment explanation
Indices: 10854--11118 Score: 521
Period size: 133 Copynumber: 2.0 Consensus size: 133
10844 GACCTTCGGA
10854 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
10919 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
66 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
10984 CCG
131 CCG
*
10987 CCATGTTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
11052 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
66 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
11117 CC
131 CC
11119 ATTTTGGTTA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (133 bp):
CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
CCG
Found at i:13306 original size:17 final size:18
Alignment explanation
Indices: 13286--13322 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13276 CTATGTGGTC
13286 TTCATATT-ATTTTCCTT
1 TTCATATTAATTTTCCTT
*
13303 TTCATTTTAATTTTCCTT
1 TTCATATTAATTTTCCTT
13321 TT
1 TT
13323 ATCGAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCATATTAATTTTCCTT
Found at i:14211 original size:10 final size:11
Alignment explanation
Indices: 14180--14208 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
14170 TTTGTTTTGA
14180 TAAATTTAATT
1 TAAATTTAATT
14191 T-AATTTAATT
1 TAAATTTAATT
14201 TAAATTTA
1 TAAATTTA
14209 TTTGATCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAAATTTAATT
Found at i:16456 original size:34 final size:34
Alignment explanation
Indices: 16413--16483 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
16403 TTTTGGTGCC
* * *
16413 TTGACTTTGTTTTCTTTTTTGGCGTATGAGCATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
*
16447 TTGACTTTGTTTCCCTTTGTGGCGTATGAGTATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
16481 TTG
1 TTG
16484 CCAGAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.14, C:0.13, G:0.23, T:0.51
Consensus pattern (34 bp):
TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
Found at i:17088 original size:36 final size:36
Alignment explanation
Indices: 17041--17119 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
17031 GTTTGATGAG
17041 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
* *
17077 GCTCCTGAGACATCCTCAAGCCGTGGTGGGGTGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
17113 GCTCCTG
1 GCTCCTG
17120 GAGCCACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (36 bp):
GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
Found at i:17444 original size:129 final size:130
Alignment explanation
Indices: 17198--17458 Score: 479
Period size: 129 Copynumber: 2.0 Consensus size: 130
17188 GACCTTCGGA
17198 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGTATATTTA
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAG---ATTTA
17263 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
63 AACTTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCAT
17328 CCG
128 CCG
*
17331 CCATGTTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAG-TTTAAAC
1 CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGATTTAAAC
17395 TTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCATCC
66 TTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCATCC
17459 ATTTTGGTTA
Statistics
Matches: 127, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
129 71 0.56
133 56 0.44
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (130 bp):
CCATGCTTTCTATAGGCTTTTGGTTTTACCACCAACTGATCTGAAACTCTTTTTAAGATTTAAAC
TTTAGAGGTAGGGCTATCCCAGACTTGTTCTGATGATGATGTGCTGTTCTCTGAATCATCATCCG
Found at i:21355 original size:19 final size:19
Alignment explanation
Indices: 21331--21367 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
21321 GTTCACATTG
*
21331 AATATTTTAATTTTTATAA
1 AATATTTTAACTTTTATAA
21350 AATATTTTAACTTTTATA
1 AATATTTTAACTTTTATA
21368 TCTTTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATTTTAACTTTTATAA
Found at i:21652 original size:21 final size:21
Alignment explanation
Indices: 21606--21653 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
21596 TGATGAAGTC
* *
21606 AATTTCTTAATAAATAAATAAC
1 AATTTCTAAATAAAT-AATAAA
21628 AATTTCTAAAATAAAT-ATAAA
1 AATTTCT-AAATAAATAATAAA
21649 AATTT
1 AATTT
21654 ATATCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 9 0.39
22 7 0.30
23 7 0.30
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
AATTTCTAAATAAATAATAAA
Found at i:32086 original size:2 final size:2
Alignment explanation
Indices: 32079--32105 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32069 ACACATATTG
32079 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32106 CTCAAAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33635 original size:17 final size:17
Alignment explanation
Indices: 33615--33654 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
33605 AAAGAAGAAC
33615 CAAACTAAAAAAATCGT
1 CAAACTAAAAAAATCGT
33632 CAAACTAAAAAAATCGT
1 CAAACTAAAAAAATCGT
33649 CAAACT
1 CAAACT
33655 GACGTATAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.57, C:0.20, G:0.05, T:0.17
Consensus pattern (17 bp):
CAAACTAAAAAAATCGT
Found at i:33944 original size:43 final size:43
Alignment explanation
Indices: 33848--33944 Score: 169
Period size: 42 Copynumber: 2.3 Consensus size: 43
33838 GAGAAGGGAG
*
33848 AAAAGAGAAAGAAAAAAAAAAGAGAAAAAAAGTTTGAAAAGTC
1 AAAAGGGAAAGAAAAAAAAAAGAGAAAAAAAGTTTGAAAAGTC
*
33891 AAAA-GTAAAGAAAAAAAAAAGAGAAAAAAAGTTTGAAAAGTC
1 AAAAGGGAAAGAAAAAAAAAAGAGAAAAAAAGTTTGAAAAGTC
33933 AAAAGGGAAAGA
1 AAAAGGGAAAGA
33945 TTTAAAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 40 0.80
43 10 0.20
ACGTcount: A:0.69, C:0.02, G:0.20, T:0.09
Consensus pattern (43 bp):
AAAAGGGAAAGAAAAAAAAAAGAGAAAAAAAGTTTGAAAAGTC
Found at i:34273 original size:3 final size:3
Alignment explanation
Indices: 34265--34301 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
34255 CTTTTCTTGT
*
34265 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
34302 GTCATCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37967 original size:20 final size:20
Alignment explanation
Indices: 37925--37970 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
37915 CAAAAAAATG
*
37925 ATATTTAATACACATAGTCT
1 ATATTTAATACACAGAGTCT
* *
37945 ATATTTAATACACAGATTTT
1 ATATTTAATACACAGAGTCT
37965 ATATTT
1 ATATTT
37971 TATCTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATTTAATACACAGAGTCT
Found at i:39566 original size:33 final size:34
Alignment explanation
Indices: 39524--39593 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
39514 TTTTGGTGCC
* *
39524 TTGACTTTGTTT-CTTTTTTGGCGTATGAGCATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
*
39557 TTGACTTTGTTTCCCTTTGTGGCGTATGAGTATA
1 TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
39591 TTG
1 TTG
39594 CCAGAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.14, C:0.13, G:0.23, T:0.50
Consensus pattern (34 bp):
TTGACTTTGTTTCCCTTTGTGGCGTATGAGCATA
Found at i:40204 original size:36 final size:36
Alignment explanation
Indices: 40157--40235 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
40147 GTTTGATGAG
40157 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
* *
40193 GCTCCTGAGACATCCTCAAGCCGTGGTGGGGTGACT
1 GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
40229 GCTCCTG
1 GCTCCTG
40236 GAGCCACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (36 bp):
GCTCCTGAGACATCCTCAAGCCGTAGTGGGGCGACT
Found at i:42273 original size:17 final size:17
Alignment explanation
Indices: 42253--42288 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
42243 CTATGTGGTC
*
42253 TTCATATTATTTTCCTT
1 TTCATATTAATTTCCTT
*
42270 TTCATTTTAATTTCCTT
1 TTCATATTAATTTCCTT
42287 TT
1 TT
42289 ATCGAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCATATTAATTTCCTT
Found at i:43167 original size:10 final size:11
Alignment explanation
Indices: 43136--43164 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
43126 TTTGTTTTGA
43136 TAAATTTAATT
1 TAAATTTAATT
43147 T-AATTTAATT
1 TAAATTTAATT
43157 TAAATTTA
1 TAAATTTA
43165 TTTGATCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAAATTTAATT
Done.