genome.fa.s166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167991.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43447

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946--990	22	2.0	24	86	8	67	51	0	0	48	1.00
1972--2309	181	1.9	181	83	2	437	41	11	8	38	1.71
4375--4413	19	2.0	20	85	14	55	25	2	5	66	1.25
4497--4547	27	2.0	25	88	7	75	45	1	1	50	1.24
4823--4868	20	2.3	20	85	11	67	45	0	0	54	0.99
5883--5920	20	1.9	20	94	0	67	47	7	0	44	1.32
5963--6048	10	7.5	12	68	24	53	48	1	1	48	1.16
5967--6060	36	2.7	35	75	15	95	47	2	1	48	1.20
6093--6135	15	2.9	15	80	16	54	55	0	0	44	0.99
6223--6261	19	2.1	18	90	4	60	53	5	5	35	1.45
6717--6759	15	2.9	16	83	10	56	48	0	4	46	1.22
6793--6824	17	1.9	16	93	6	55	46	0	0	53	1.00
7783--7916	46	3.0	47	83	5	170	41	11	13	33	1.81
7794--7923	22	5.9	22	79	7	129	39	11	14	34	1.82
9174--9212	7	5.6	7	88	11	62	25	0	0	74	0.82
9173--9226	14	4.0	13	81	15	65	24	1	0	74	0.92
9179--9226	21	2.3	20	77	16	53	25	2	0	72	0.95
10276--10348	20	3.5	20	73	21	69	50	0	1	47	1.09
10278--10361	22	3.8	22	72	19	68	51	0	1	47	1.08
10409--10475	36	1.9	34	82	11	82	47	1	4	46	1.31
10594--10722	67	1.9	67	80	10	147	52	1	2	43	1.23
10670--10711	15	2.9	14	77	22	50	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10832--10896	33	2.0	33	84	6	87	40	9	0	50	1.34
12643--12700	9	6.8	9	76	13	52	46	1	0	51	1.11
12649--12701	13	3.9	13	82	12	54	49	0	0	50	1.00
12955--12999	15	2.9	16	80	9	58	44	0	0	55	0.99
13083--13137	21	2.6	22	83	13	64	52	0	0	47	1.00
13945--13990	21	2.2	20	88	3	65	50	2	0	47	1.13
14860--15731	180	4.9	181	76	9	686	42	9	8	38	1.70
14880--15731	179	4.7	178	75	10	496	42	9	9	38	1.70
15724--16712	179	5.5	178	74	8	692	42	9	9	39	1.69
17941--18042	42	2.5	40	78	15	102	51	2	1	43	1.27
19451--19517	36	1.9	34	82	11	82	47	1	4	46	1.31
19713--19754	15	2.9	14	77	22	50	52	0	2	45	1.13
19845--19878	15	2.2	16	89	5	52	50	0	0	50	1.00
19896--19967	15	5.0	15	73	13	62	43	4	0	52	1.20
19897--19967	19	3.5	19	69	14	52	43	4	0	52	1.20
20840--20880	16	2.4	18	84	12	59	60	2	0	36	1.10
20888--20957	20	3.4	19	71	13	59	48	5	2	42	1.41
21176--21218	14	2.9	15	80	13	54	48	2	0	48	1.14
21628--21996	192	2.0	188	79	7	408	39	8	9	42	1.69
22873--22959	9	9.7	9	70	21	58	47	1	0	51	1.08
24701--24733	14	2.4	14	90	5	50	45	0	0	54	0.99
24754--24791	19	2.0	19	85	10	51	44	5	0	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25042--25095	22	2.5	23	85	8	69	38	0	0	61	0.96
25109--25150	21	2.0	21	86	9	59	57	0	2	40	1.12
25492--25544	21	2.5	21	82	11	72	47	1	1	49	1.23
25492--25543	10	5.0	11	77	9	56	46	1	1	50	1.23
25503--25550	21	2.4	21	89	6	73	47	2	2	47	1.25
25836--25902	23	2.8	25	82	6	77	44	4	2	47	1.38
25865--25917	23	2.4	22	81	9	54	52	0	3	43	1.19
26233--26279	23	2.2	22	85	11	62	59	0	0	40	0.97
27715--27769	22	2.5	22	85	5	67	49	3	0	47	1.19
27712--27769	26	2.5	22	81	16	55	50	3	0	46	1.18
27862--27916	25	2.2	26	84	15	73	47	0	0	52	1.00
27879--28002	13	9.8	13	67	18	57	45	3	3	48	1.34
28198--28245	20	2.4	20	79	6	53	45	0	0	54	0.99
28489--28528	17	2.4	17	86	0	53	35	0	5	60	1.19
29133--29224	36	2.6	37	78	11	97	46	2	2	48	1.26
29654--29695	22	2.0	21	86	13	59	50	2	0	47	1.14
29665--29703	15	2.5	16	88	12	55	48	5	0	46	1.24
29737--29783	24	2.0	24	83	8	60	48	2	2	46	1.25
30670--30763	6	15.2	6	70	19	52	50	2	2	45	1.25
30670--30741	13	5.8	13	72	22	57	50	1	1	47	1.18
30654--30710	17	3.4	17	76	13	55	52	0	1	45	1.11
31156--31262	22	4.6	23	77	14	71	46	0	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31355--31387	13	2.8	12	90	9	50	51	0	0	48	1.00
31406--31852	180	2.5	181	78	6	451	42	10	6	39	1.67
31865--31901	17	2.2	17	90	0	56	54	2	0	43	1.14
32077--32157	30	2.8	30	82	14	82	44	0	4	50	1.23
32079--32124	23	2.0	22	84	12	58	45	0	2	52	1.13
32107--32160	19	3.0	18	73	21	51	46	0	3	50	1.19
33153--33186	17	2.1	17	88	5	52	29	17	5	47	1.71
33929--33961	15	2.1	16	88	5	50	48	3	3	45	1.33
33957--34017	18	3.4	18	82	10	63	44	1	1	52	1.20
33960--34017	16	3.4	16	78	17	55	44	1	1	51	1.21
35244--35282	17	2.3	17	91	8	62	66	0	0	33	0.92
35728--35765	14	2.7	14	84	8	51	57	0	2	39	1.12
35810--35869	19	3.1	19	78	17	70	50	0	0	50	1.00
35797--35847	26	1.9	25	81	18	59	49	0	0	50	1.00
35806--35857	21	2.8	17	76	20	59	53	0	0	46	1.00
36644--36696	19	2.8	19	82	2	63	56	0	1	41	1.10
36982--37024	17	2.4	18	84	7	52	58	0	4	37	1.19
37568--37608	17	2.4	17	80	12	57	53	4	0	41	1.22
37728--37790	16	4.0	15	78	13	56	49	0	4	46	1.23
38916--39002	24	3.8	24	70	18	58	43	3	1	51	1.26
39088--39120	15	2.1	16	88	5	50	51	3	0	45	1.16
39101--39163	19	3.5	19	79	12	62	46	0	1	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39798--39835	18	2.1	19	90	5	60	7	13	0	78	0.94
39842--39882	22	1.9	21	85	5	55	19	2	2	75	1.03
40258--40304	8	5.6	8	80	9	58	12	4	2	80	0.94
40918--40951	16	2.1	16	94	0	59	14	20	0	64	1.28
41048--41085	18	2.1	19	90	5	60	7	13	0	78	0.94
41378--41423	21	2.1	21	84	11	58	8	6	8	76	1.17
41416--41467	16	3.6	16	75	17	51	19	5	0	75	1.01
41491--41542	7	7.0	7	76	20	52	15	3	1	78	0.98
41900--41977	17	4.6	17	77	13	72	8	11	2	76	1.10
42306--42357	19	2.7	19	80	14	54	21	5	0	73	1.04
42286--42383	45	2.2	43	80	15	110	19	11	1	68	1.26
43044--43103	17	3.5	17	72	20	52	10	10	3	76	1.12

Tables:   1

The End!