Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 2 of 100
Found at i:82690 original size:360 final size:358
Alignment explanation
Indices: 81133--84013 Score: 2010
Period size: 360 Copynumber: 8.1 Consensus size: 358
81123 GATATCAATA
* * *
81133 TCAAATCGTTATGAGCTTTTGTTTTGTCATAAAACAGTTGTTTTGT--TCATACAAGCTTATTTG
1 TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTT-TCATCATACAAGCTTA-TTC
* * * *
81196 AATAAAAATAATACAAATTTAATAATATTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
64 AAAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * * * * * *
81261 TTGTTTATTATACCAGTTCAAATGGTT-TAAACTA-TTAGAATAATTATATATTTCAAATCGTTT
129 CTGTTTATCAAACTAATTCAAATAGTTAT-GACTATTTA-AACAATTATCTATTTCAAATCATTA
* * * * * *
81324 TGA-CTTTATGTTTAGTCATAAAATAGTTAG-TTCAATTCATACAAGCCTATTCAAAATAGATTA
192 TGACCTTT-TGTTTAGTTATAAAACAATT-GTTTCAATTCATACAAGCTTATTCAAAATAAAATA
* * * *
81387 ATACTAATTTATTAACA-TTCAAAAAATAATAAGAAAGAAATTTTAAAAAATAAATCTATTTACC
255 ATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATCTATTTACC
* * * *
81451 GAACAAGTTCAAATAGTTGTTACTATTTGAACAATTGTTTATT
319 AAAC-AGTTCAAATAGTT-ATACTATTTG-ACAATTATCTATT
* *** * ** *
81494 TAAAATCGTTATG-ACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTAATACAAATTTATACA
1 TCAAATCGTTATGAAC-TTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTTATTCA
* * * **
81558 GAATAAAATAATACTAATTTATTAATGTTTCTAAAATTAATAAGTAAGAGATTT-TTAAA-AAAT
65 -AAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * ** *
81621 -TGTTTATCGAATTAATTAAAATAATTATGGCTATTTGAATGATTATCGATTTCAAATCATTATG
129 CTGTTTATCAAACTAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATG
* * * *** *
81685 GCCTTTTGTTTTGTTACAAAACAAATT-TTTTTTTATCATACAAGCTTATT-AAAA-AAAAAAAT
194 ACCTTTTGTTTAGTTATAAAAC-AATTGTTTCAAT-TCATACAAGCTTATTCAAAATAAAATAAT
* * * * *
81747 ACTAATTTACTAATATTTCAAAAATTAATAAGTAAGAAATTTAAAAAATAAATATGTTTACTGAA
257 ACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTAC-CAA
* * * *
81812 CCAGTTTAAATAGTTATGACTGTTTGAACAATTATCAATCT
321 ACAGTTCAAATAGTTAT-ACTATTTG-ACAATTATCTAT-T
** * * * * *
81853 T-AAATTTTTATGATC-TTTGTTTTGTCAT-AAATAATTGTTTTTGATCAAAGAAGCTTATTCGA
1 TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTTATTC-A
** * * * * * *
81915 TTAAAAATAATTCTAATTTAATAACATTCCAAAAA-T--TAA-TAAGAGATTTAAAAAGTAAATT
65 AAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * ** ** * * * ** * *
81976 TATTTATTGAACCAGCTCAAATAGTTAAAATTA-TTAGAATAATTATCTATTTTAAATTGTTCTA
130 TGTTTATCAAACTAATTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCATTATG
* * * * *
82040 ACCTTTTATTTAGTCATAAAATAATTGTTTC-ATACCATATAAGCTTATTCAAAATAAAATAAT-
194 ACCTTTTGTTTAGTTATAAAACAATTGTTTCAAT-TCATACAAGCTTATTCAAAATAAAATAATA
* * * * * * *
82103 CTTAATATATTAACATTT-AGAAAATTCATAAGCAAAAGATTTGAAAAATAAATCTATTTACCTA
258 C-TAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAA
* * *
82167 ACAAGTT--AATAGTTATAACTATTTAAATAATTA-CTTTT
321 AC-AGTTCAAATAGTTAT-ACTATTT-GACAATTATCTATT
* * * * * * * *
82205 TTAAAACTGTTATGACCTTTTATTTTGACATAAAACAA-T-TTTTTCAGTTCATAAAAACTTATC
1 TCAAATC-GTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCA--TCATACAAGCTTATT
* * * * *
82268 CAAAATAAAATAATACTAA-TTATTAGTATTTTAAATATTAATAAGCAAGACATTTAAAAAAATA
63 CAAAA-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATA
* * * * * *
82332 AATCTGTTT-TCAAAACAAATTCAAATAGTTATGACTGTTTAAACAATTGTATACTTAAAATCAT
126 AATCTGTTTATC-AAACTAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCAT
* *
82396 TATGACCTTCTGTTTAGTAATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATA
190 TATGACCTTTTGTTTAGTTATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATA
* * * * * *
82461 ATAATAATTTATTAATATTTCAAAAATTAATAAGTCAGTGA-TTAAAAAGTGAATCTGTTTACCA
255 ATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCA
* *
82525 AATCAGTTCAAATAATTATACCCATTTCGACAATTATCTATT
320 AA-CAGTTCAAATAGTTATA-CTATTT-GACAATTATCTATT
* * *
82567 TCAAATCATTATGAACTTTTGTTTTGTCATAAAACAACTGTTTTTCATCATACAAGCCTATTCAA
1 TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTTATTCAA
* *
82632 AAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAGGAGATTTAAAAAATAAATAT
66 AAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* *
82697 GTTTACCAAAC----T--AAT--TT-T---TATTTAAACAATTACCTATTTCAAATCATTAT-AT
131 GTTTATCAAACTAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGA-
* ** *
82749 CCTTTTGTTCTA-TTATAAAATAATTGTTTCAATTCATACAAGCTTATTTGAAATAAAATAATAT
195 CCTTTTGTT-TAGTTATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATAC
* * * * *
82813 TAATTTAATAATATTCCAAAATTTAATAACTAA-AGGATTTAAAAAATAAATCTATTTGCCAAAG
259 TAATTTATTAATATTTCAAAAATTAATAAGTAAGA-GATTTAAAAAATAAATCTATTTACCAAA-
* * **
82877 CAATTCAAATAGTTAAAACTATATAAACAATTATCTATT
322 CAGTTCAAATAGTT-ATACTAT-TTGACAATTATCTATT
* * * *
82916 TCAAATCTTTATGACCTTTTGTTTTGCCATAAAAAAATTG--TTTCAATTCATACAAGCTTATTT
1 TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTC-A-TCATACAAGCTTA-TT
* * * * * ***
82979 GAAATAAAATAATACAAATTTGTTAATATTTCAAAAATTAATAAGTAAGTGATTTAAAAAGCGAA
63 CAAAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA
* * * * * * * * *
83044 TCTGTTTACCGAA-TCATTTAAA-A-TATATGGCCATTTCAATAATTATCTATTTCAAATTATTA
128 TCTGTTTATCAAACTAATTCAAATAGT-TATGACTATTTAAACAATTATCTATTTCAAATCATTA
* * * * ** * * ** *
83106 TTACCTTTTGTTTGGTTATATAACAAATTTTTTTGA-CCATTCAAGCTTATTCGGAATGAAATAA
192 TGACCTTTTGTTTAGTTATAAAAC-AATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAA
* * *
83170 TACTAATTTATTAATCTTTCAAAAATGAATATGTAAGAGATTTAAAAAAT-AA---A-TT--CAA
256 TACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAA
* * * **
83228 ATAGTT---AT-G----ACTATTTGAACAATTGTATGGT
321 ACAGTTCAAATAGTTATACTATTTG-ACAATTATCTATT
* * * *
83259 TCAAATCATTAT-AACCTTTTGTTCTGTCATAAAACAATTATTTCT-ATTCATACAAGCTTATTC
1 TCAAATCGTTATGAA-CTTTTGTTTTGTCATAAAACAATTGTTTTTCA-TCATACAAGCTTATTC
* * * * *
83322 AAAATAAAATAATACTAATCTAATAATATTCCAACAATTAATAAGTAAGAGAATTAAAAAATAAA
64 AAAA-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA
* * * * * * * * *
83387 TTTATTTGTCGAACTAATTCAAATATTTAGGACTATATGAACAATTATCTATTTCAAAAT-GTTA
128 TCTGTTTATCAAACTAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTC-AAATCATTA
* * * * *
83451 TGACCTTTTGTTTTGTCATAAAATAATTTTTTCAATTCATACTAGCTTATTCAAAATAAAATAA-
192 TGACCTTTTGTTTAGTTATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAAT
* * * *
83515 AATGAACTTATTAATATTTTAAAAA-T--TAA-TAAGAGATTTAAAAAAAATAATTCTATTTACC
257 ACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT--AAAAAATAAATCTATTTACC
* * * *
83576 TAACTAGTTCGAATAATTATACCTATTTAATCAATTATCTATT
319 AAAC-AGTTCAAATAGTTATA-CTATTTGA-CAATTATCTATT
* * * * * ** * * * **
83619 TCAAATTGTTATGACCTTTTGTTTTGTTATTAAACAAATGTTTTTGTTCATATAAGTTTGTTTGG
1 TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTT-ATTCA
* * * * * *
83684 AATAAAGTTATAATAATCTATTAATATTTCAAAAATTAATAA-T---AGATTTAAAAAAACAAAT
65 AAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAAT
* * * * * *
83745 CTATTTATCAAACTATTTCAAATAGTTATTACTATTT-GACAAATTATTTATTTCAAATCGTTAT
129 CTGTTTATCAAACTAATTCAAATAGTTATGACTATTTAAAC-AATTATCTATTTCAAATCATTAT
* * * * * * * * *
83809 GA-CTTTTTTATTCTGTTAGAAAACAATTGTTTCTATTTATACAACCTTATTTAGATTAAAATAA
193 GACCTTTTGT-TT-AGTTATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAA
* * * * * **
83873 TATTAATTTATTAATATTTCAACAATTAATAAGTAA-AAATTTTAAAAAATAAATATGTTTACTG
256 TACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATCTATTTACCA
* * * *
83937 AACAAG-ACTAAATAGTCATGACTATTTGAATAAGTATCTATT
320 AAC-AGTTC-AAATAGTTAT-ACTATTTG-ACAATTATCTATT
* *
83979 TCAAATCATTTATG-ACAATTTGTTTTGTCATAAAA
1 TCAAATC-GTTATGAAC-TTTTGTTTTGTCATAAAA
84014 TAATACCAAT
Statistics
Matches: 1959, Mismatches: 433, Indels: 256
0.74 0.16 0.10
Matches are distributed among these distances:
341 10 0.01
342 9 0.00
343 126 0.06
344 19 0.01
345 87 0.04
346 5 0.00
347 6 0.00
348 115 0.06
349 100 0.05
350 75 0.04
351 5 0.00
352 17 0.01
353 15 0.01
354 64 0.03
355 100 0.05
356 157 0.08
357 76 0.04
358 137 0.07
359 130 0.07
360 443 0.23
361 184 0.09
362 72 0.04
363 7 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (358 bp):
TCAAATCGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTTATTCAA
AAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
GTTTATCAAACTAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGAC
CTTTTGTTTAGTTATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATACTA
ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAGT
TCAAATAGTTATACTATTTGACAATTATCTATT
Found at i:83564 original size:343 final size:341
Alignment explanation
Indices: 82878--83559 Score: 737
Period size: 343 Copynumber: 2.0 Consensus size: 341
82868 TTGCCAAAGC
* * * * *
82878 AATTCAAATAGTTAAAACTATATAAACAATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGC
1 AATTCAAATAGTTAAAACTATATAAACAATTATATAGTTCAAATCATTATAACCTTTTGTTCTGC
* ** * **
82943 CATAAAAAAATTGTTTCAATTCATACAAGCTTATTTGAAATAAAATAATACAAATTTGTTAATAT
66 CATAAAAAAATTATTTCAATTCATACAAGCTTATTCAAAATAAAATAATACAAATCTAATAATAT
* * * * * * * *
83008 TTCAAAAATTAATAAGTAAGTGATTTAAAAAGCGAATCTGTTTACCGAATCATTTAAAATATATG
131 TCCAAAAATTAATAAGTAAGAGAATTAAAAAACAAATCTATTTACCGAATAATTCAAAATATATG
* * * * *
83073 GCCATTTCAATAATTATCTATTTCAAATTATTATTACCTTTTGTTTGGTTATATAACAAATTTTT
196 GCCATATCAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTGGTCATATAACAAATTTTT
** * ** * * * * *
83138 TTGACCATTCAAGCTTATTCGGAATGAAATAATACTAATTTATTAATCTTTCAAAAATGAATATG
261 TCAACCATACAAGCTTATTCAAAATAAAATAATAATAACTTATTAATATTTCAAAAAT--ATATA
83203 TAAGAGATTTAAAAAATA
324 TAAGAGATTTAAAAAATA
** * * * * *
83221 AATTCAAATAGTTATGACTATTTGAACAATTGTATGGTTCAAATCATTATAACCTTTTGTTCTGT
1 AATTCAAATAGTTAAAACTATATAAACAATTATATAGTTCAAATCATTATAACCTTTTGTTCTGC
* * *
83286 CATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATAT
66 CATAAAAAAATTATTTCAATTCATACAAGCTTATTCAAAATAAAATAATACAAATCTAATAATAT
* * * ** *
83351 TCCAACAATTAATAAGTAAGAGAATTAAAAAATAAATTTATTTGTCGAACTAATTC-AAATATTT
131 TCCAAAAATTAATAAGTAAGAGAATTAAAAAACAAATCTATTTACCGAA-TAATTCAAAATATAT
* * * *
83415 AGGACTATATGAACAATTATCTATTTCAAAATGTTATGACCTTTTGTTTTGTCATA-AA-ATAAT
195 -GG-CCATATCAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTGGTCATATAACA-AAT
* * *
83478 TTTTTCAATTCATACTAGCTTATTCAAAATAAAATAA-AATGAACTTATTAATATTTTAAAAAT-
257 TTTTTCAA-CCATACAAGCTTATTCAAAATAAAATAATAAT-AACTTATTAATATTTCAAAAATA
83541 TA-ATAAGAGATTTAAAAAA
320 TATATAAGAGATTTAAAAAA
83560 AATAATTCTA
Statistics
Matches: 276, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
341 16 0.06
342 2 0.01
343 155 0.56
344 19 0.07
345 84 0.30
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (341 bp):
AATTCAAATAGTTAAAACTATATAAACAATTATATAGTTCAAATCATTATAACCTTTTGTTCTGC
CATAAAAAAATTATTTCAATTCATACAAGCTTATTCAAAATAAAATAATACAAATCTAATAATAT
TCCAAAAATTAATAAGTAAGAGAATTAAAAAACAAATCTATTTACCGAATAATTCAAAATATATG
GCCATATCAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTGGTCATATAACAAATTTTT
TCAACCATACAAGCTTATTCAAAATAAAATAATAATAACTTATTAATATTTCAAAAATATATATA
AGAGATTTAAAAAATA
Found at i:83708 original size:179 final size:176
Alignment explanation
Indices: 83223--84017 Score: 495
Period size: 179 Copynumber: 4.4 Consensus size: 176
83213 AAAAAATAAA
* * * * ** ** * *
83223 TTCAAATAGTTATGACTATTTGAACAATTGTATGGTTCAAATCATTATAACCTTTTGTTCTGTCA
1 TTCAAATAATTATTACTATTT-AACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
* * * *
83288 TAAAACAATTATTTCT-ATTCATACAAGCTTATTCAAAATAAAATAATACT-AA-TCTAATAATA
65 TAAAATAATT-TTT-TAATTCATACTAGCTTATTCAAAATAAAATAA-AATGAACT-TATTAATA
* * * * * ** * *
83350 TTCCAACAATTAATAAGTAAGAGAATT-AAAAAATAAATTTATTTGTCGAACTAA
126 TTTCAA-AA--ATTAA-TAAGAGATTTAAAAAAACAAATCTATTTACCAAACTAG
* ** * *
83404 TTCAAATATTTAGGACTATATGAACAATTATCTATTTCAAAATGTTATGACCTTTTGTTTTGTCA
1 TTCAAATAATTATTACTAT-TTAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
83469 TAAAATAATTTTTTCAATTCATACTAGCTTATTCAAAATAAAATAAAATGAACTTATTAATATTT
65 TAAAATAATTTTTT-AATTCATACTAGCTTATTCAAAATAAAATAAAATGAACTTATTAATATTT
* *
83534 TAAAAATTAATAAGAGATTTAAAAAAA-ATAATTCTATTTACCTAACTAG
129 CAAAAATTAATAAGAGATTTAAAAAAACA-AA-TCTATTTACCAAACTAG
* *
83583 TTCGAATAATTA-TACCTATTTAATCAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTT
1 TTCAAATAATTATTA-CTATTTAA-CAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTC
* * * *** * *
83647 ATTAAACA-AATGTTTTT-GTTCATA-TAAGTTTGTTTGGAATAAAGTTATAAT-AA-TCTATTA
64 A-TAAA-ATAAT-TTTTTAATTCATACT-AGCTTATTCAAAATAAA-ATAAAATGAACT-TATTA
* * *
83707 ATATTTCAAAAATTAATAATAGATTTAAAAAAACAAATCTATTTATCAAACTAT
123 ATATTTCAAAAATTAATAAGAGATTTAAAAAAACAAATCTATTTACCAAACTAG
* * * * *
83761 TTCAAATAGTTATTACTATTTGACAAATTATTTATTTCAAATCGTTATGA-CTTTTTTATTCTGT
1 TTCAAATAATTATTACTATTTAAC-AATTATCTATTTCAAATTGTTATGACCTTTTGT-TT-TGT
* * * * * * * * * * * *
83825 TAGAAAACAATTGTTTCT-ATTTATACAACCTTATTTAGATTAAAATAATATTAATTTATTAATA
63 CATAAAATAATT-TTT-TAATTCATACTAGCTTATTCAAAATAAAATAAAATGAACTTATTAATA
* * * * * * ** *
83889 TTTCAACAATTAATAAGTAAAAATTTTAAAAAATAAATATGTTTACTGAACAAG
126 TTTCAAAAATTAATAAG---AGATTTAAAAAAACAAATCTATTTACCAAACTAG
* * * * * * **
83943 -ACTAAATAGTCATGACTATTTGAATAAGTATCTATTTCAAATCAT-TTATGACAATTTGTTTTG
1 TTC-AAATAATTATTACTATTT-AACAATTATCTATTTCAAAT--TGTTATGACCTTTTGTTTTG
84006 TCATAAAATAAT
62 TCATAAAATAAT
84018 ACCAATTTAT
Statistics
Matches: 491, Mismatches: 88, Indels: 69
0.76 0.14 0.11
Matches are distributed among these distances:
177 19 0.04
178 87 0.18
179 174 0.35
180 21 0.04
181 109 0.22
182 68 0.14
183 9 0.02
184 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (176 bp):
TTCAAATAATTATTACTATTTAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCAT
AAAATAATTTTTTAATTCATACTAGCTTATTCAAAATAAAATAAAATGAACTTATTAATATTTCA
AAAATTAATAAGAGATTTAAAAAAACAAATCTATTTACCAAACTAG
Found at i:83708 original size:524 final size:517
Alignment explanation
Indices: 81133--83725 Score: 1671
Period size: 524 Copynumber: 4.9 Consensus size: 517
81123 GATATCAATA
* * * * * * ** **
81133 TCAAATCGTTATGAGCTTTTGTTTTGTCATAAAACAGTTGTTTTGTTCATACAAGCTTATT-TGA
1 TCAAATCATTATAACCTTTTGTTCTGTCATAAAACAATTATTTCATTCATACAAGCTTATTCAAA
* ** *
81197 ATAAAAATAATACAAATTTAATAATATTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
66 AT-AAAATAATACTAA-TTAATAATA-TTCCAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * * * * * * *
81262 TGTTTATTATACCAGTTCAAATGGTTTAA-ACTAT-TAGAATAATTATATATTTC-AAATCGTTT
128 TATTTGTCA-AACAATTCAAATAG-TTAAGACTATATA-AACAATTATCTATTTCAAAATCATTA
* * * * * *
81324 TGA-CTTTATGTTTAGTCATAAAATAGTTAG-TTCAATTCATACAAGCCTATTCAAAATAGATTA
190 TGACCTTT-TGTTTTGTCATAAAAAAATT-GTTTCAATTCATACAAGCTTATTCAAAATAAAATA
* * * * *
81387 ATACTAATTTATTAACA-TTCAAAAAATAATAAGAAAGAAATTT-TAAAAAATAAATCTATTTAC
253 A-AATAATTTATTAATATTTCAAAAATTAATAAG--AG--ATTTAAAAAAAAT-AATCTGTTTAC
* * * * * * * ** *
81450 CGAA-CAAGTTCAAATAGTTGTTACTATTTGAA-CAATTGTTTATTTAAAATCGTTATGACATTT
312 C-AATC-AGTTCAAATAATT-ATACCATTTCAATCAATTATCTATTTCAAATTATTATGACCTTT
* * * * * * * * **
81513 TGTTTTGTCATAAAACAATTGTTTTAGTTAATACAA-ATTTATACAGAATAAAATAATACTAATT
374 TGTTTTGTTATTAAACAAATGTTTTTGATCATATAAGCTTT-T-TGGAAT-AAATAATACTAATT
* * *
81577 TATTAATGTTTCTAAAATTAATAAGTAAGAGATTTTTAAAAAATTGTTTATCGAATTAATTA-AA
436 TATTAATATTTCAAAAATTAATAAGTAAGAGA--TTTAAAAAA-----TA---AA-TATTTACAA
* ** *
81641 A-TAATTATGGCTATTTGAATGATTATCGATT
490 ACTAATT-T--CTATTTAAACAATTA-CTATT
** * * * * **
81672 TCAAATCATTATGGCCTTTTGTTTTGTTACAAAACAAATTTTTTTTTATCATACAAGCTTATT-A
1 TCAAATCATTATAACCTTTTGTTCTGTCATAAAAC-AATTATTTCAT-TCATACAAGCTTATTCA
* * * *
81736 AAA-AAAAAAATACTAATTTACTAATATTTCAAAAATTAATAAGTAAGAAATTTAAAAAATAAAT
64 AAATAAAATAATACTAA-TTAATAATA-TTCCAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * * * * * * * **
81800 ATGTTTACTGAACCAGTTTAAATAGTTATGACTGTTTGAACAATTATCAATCTT--AAATTTTTA
127 CTATTT-GTCAAACAATTCAAATAGTTAAGACTATATAAACAATTATCTAT-TTCAAAATCATTA
* * ** * * * *
81863 TGATC-TTTGTTTTGTCAT-AAATAATTGTTTTTGA-TCAAAGAAGCTTATTC-GATTAAAAATA
190 TGACCTTTTGTTTTGTCATAAAAAAATTG-TTTCAATTCATACAAGCTTATTCAAAAT-AAAATA
** * * * ** * * ** *
81924 ATTCTAATTTAATAACATTCCAAAAATTAATAAGAGATTTAAAAAGTA-AATTTATTTATTGAAC
253 A-AATAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAAAATAATCTGTTTA-CCAAT
* * * ** ** * * * * * *
81988 CAGCTCAAATAGTTAAAATTATTAGAAT-AATTATCTATTTTAAATTGTTCTAACCTTTTATTTA
316 CAGTTCAAATAATT-ATACCATTTCAATCAATTATCTATTTCAAATTATTATGACCTTTTGTTTT
* * * * * * *** *
82052 GTCATAAAATAATTGTTTCAT-ACCATATAAGCTTATTCAAAATAAAATAAT-CTTAATATATTA
380 GTTATTAAACAAATGTTT-TTGATCATATAAGCTT-TTTGGAAT-AAATAATAC-TAATTTATTA
* * * * * *
82115 ACATTT-AGAAAATTCATAAGCAAAAGATTTGAAAAATAAATCTATTTACCTAACAAGTTAATAG
441 ATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAA--TATTTA-C--A-AA-CT-A-A-
* *
82179 TTATAACTATTTAAATAATTACTTTT
495 TT-T--CTATTTAAACAATTACTATT
* * * * * * * * * * *
82205 TTAAAACTGTTATGACCTTTTATTTTGACATAAAACAATTTTTTCAGTTCATAAAAACTTATCCA
1 TCAAATC-ATTATAACCTTTTGTTCTGTCATAAAACAATTATTTCA-TTCATACAAGCTTATTCA
* * ** * *
82270 AAATAAAATAATACTAATTATTAGTATTTTAAATATTAATAAGCAAGACATTTAAAAAAATAAAT
64 AAATAAAATAATACTAATTAATAATATTCCAAA-ATTAATAAGTAAGAGATTT-AAAAAATAAAT
* * * * * * *
82335 CTGTTT-TCAAAACAAATTCAAATAGTTATGACTGTTTAAACAATTGTATACTT-AAAATCATTA
127 CTATTTGTC-AAAC-AATTCAAATAGTTAAGACTATATAAACAATTATCTATTTCAAAATCATTA
* * * *
82398 TGACCTTCTGTTTAGTAATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAAT
190 TGACCTTTTGTTTTGTCATAAAAAAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAA-
** * * * *
82463 AATAATTTATTAATATTTCAAAAATTAATAAGTCAGTGATTAAAAAGTGAATCTGTTTACCAAAT
254 AATAATTTATTAATATTTCAAAAATTAATAAGAGATTTA-AAAAAAAT-AATCTGTTTACC-AAT
* * *
82528 CAGTTCAAATAATTATACCCATTTCGA-CAATTATCTATTTCAAATCATTATGAACTTTTGTTTT
316 CAGTTCAAATAATTATA-CCATTTCAATCAATTATCTATTTCAAATTATTATGACCTTTTGTTTT
* * * * * * *** *
82592 GTCATAAAACAACTGTTTTTCATCATACAAGCCTATTCAAAAAAAATAATACTAATTTATTAATA
380 GTTATTAAACAAATGTTTTTGATCATATAAG-CTTTTTGGAATAAATAATACTAATTTATTAATA
* *
82657 TTTCAAAAATTAATAAGTAGGAGATTTAAAAAATAAATATGTTTACCAAACTAATTTTTATTTAA
444 TTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATA--TTTA-CAAACTAATTTCTATTTAA
82722 ACAATTACCTATT
506 ACAATTA-CTATT
* * * * * **
82735 TCAAATCATTATATCCTTTTGTTCTATTATAAAATAATTGTTTCAATTCATACAAGCTTATTTGA
1 TCAAATCATTATAACCTTTTGTTCTGTCATAAAACAATTATTTC-ATTCATACAAGCTTATTCAA
* *
82800 AATAAAATAATATTAATTTAATAATATTCCAAAATTTAATAACTAA-AGGATTTAAAAAATAAAT
65 AATAAAATAATACTAA-TTAATAATATTCCAAAA-TTAATAAGTAAGA-GATTTAAAAAATAAAT
* * *
82864 CTATTTGCCAAAGCAATTCAAATAGTTAAAACTATATAAACAATTATCTATTTC-AAATCTTTAT
127 CTATTTGTCAAA-CAATTCAAATAGTTAAGACTATATAAACAATTATCTATTTCAAAATCATTAT
* **
82928 GACCTTTTGTTTTGCCATAAAAAAATTGTTTCAATTCATACAAGCTTATTTGAAATAAAATAATA
191 GACCTTTTGTTTTGTCATAAAAAAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAA-A
* ***
82993 CA-AATTTGTTAATATTTCAAAAATTAATAAGTAAGTGATTT-AAAAAGCGAATCTGTTTACCGA
255 -ATAATTTATTAATATTTCAAAAATTAATAAG--A--GATTTAAAAAAAATAATCTGTTTACC-A
* * * *
83056 ATCATTTAAAAT-A-TATGGCCATTTCAAT-AATTATCTATTTCAAATTATTATTACCTTTTGTT
314 ATCAGTTCAAATAATTAT-ACCATTTCAATCAATTATCTATTTCAAATTATTATGACCTTTTGTT
* * * *
83118 TGGTTA-TATAACAAATTTTTTTGACCAT-TCAAGCTTATTCGGAATGAAATAATACTAATTTAT
378 TTGTTATTA-AACAAATGTTTTTGATCATAT-AAGCTT-TTTGGAAT-AAATAATACTAATTTAT
* * * *
83181 TAATCTTTCAAAAATGAATATGTAAGAGATTTAAAAAAT-AA-A-TT-CAAA-TAGTTATGACTA
439 TAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATTTACAAACTAATT-T--CTA
* *
83241 TTTGAACAATT-GTATGGT
501 TTTAAACAATTACTAT--T
83259 TCAAATCATTATAACCTTTTGTTCTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAA
1 TCAAATCATTATAACCTTTTGTTCTGTCATAAAACAATTATTTC-ATTCATACAAGCTTATTCAA
* *
83324 AATAAAATAATACTAATCTAATAATATTCCAACAATTAATAAGTAAGAGAATTAAAAAATAAATT
65 AATAAAATAATACTAAT-TAATAATATTCCAA-AATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * *
83389 TATTTGTCGAACTAATTCAAATATTTAGGACTATATGAACAATTATCTATTTCAAAAT-GTTATG
128 TATTTGTCAAAC-AATTCAAATAGTTAAGACTATATAAACAATTATCTATTTCAAAATCATTATG
* * *
83453 ACCTTTTGTTTTGTCATAAAATAATTTTTTCAATTCATACTAGCTTATTCAAAATAAAATAAAAT
192 ACCTTTTGTTTTGTCATAAAAAAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAAAAT
* * *
83518 GAACTTATTAATATTTTAAAAATTAATAAGAGATTTAAAAAAAATAATTCTATTTACCTAA-CTA
257 -AATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAAAATAA-TCTGTTTACC-AATC-A
* *
83582 GTTCGAATAATTATACCTATTT-AATCAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGT
318 GTTCAAATAATTATACC-ATTTCAATCAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGT
* * * * *
83646 TATTAAACAAATGTTTTTGTTCATATAAGTTTGTTTGGAATAAAGTTATAATAATCTATTAATAT
382 TATTAAACAAATGTTTTTGATCATATAAGCTT-TTTGGAATAAA-TAATACTAATTTATTAATAT
83711 TTCAAAAATTAATAA
445 TTCAAAAATTAATAA
83726 TAGATTTAAA
Statistics
Matches: 1641, Mismatches: 316, Indels: 209
0.76 0.15 0.10
Matches are distributed among these distances:
520 5 0.00
521 12 0.01
522 27 0.02
523 14 0.01
524 364 0.22
525 10 0.01
526 2 0.00
527 4 0.00
528 72 0.04
529 272 0.17
530 61 0.04
531 14 0.01
532 4 0.00
533 160 0.10
534 82 0.05
535 75 0.05
536 21 0.01
537 102 0.06
538 35 0.02
539 185 0.11
540 101 0.06
541 19 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (517 bp):
TCAAATCATTATAACCTTTTGTTCTGTCATAAAACAATTATTTCATTCATACAAGCTTATTCAAA
ATAAAATAATACTAATTAATAATATTCCAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTAT
TTGTCAAACAATTCAAATAGTTAAGACTATATAAACAATTATCTATTTCAAAATCATTATGACCT
TTTGTTTTGTCATAAAAAAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAAAATAATT
TATTAATATTTCAAAAATTAATAAGAGATTTAAAAAAAATAATCTGTTTACCAATCAGTTCAAAT
AATTATACCATTTCAATCAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTTATTAAACA
AATGTTTTTGATCATATAAGCTTTTTGGAATAAATAATACTAATTTATTAATATTTCAAAAATTA
ATAAGTAAGAGATTTAAAAAATAAATATTTACAAACTAATTTCTATTTAAACAATTACTATT
Found at i:84129 original size:144 final size:144
Alignment explanation
Indices: 83865--84129 Score: 379
Period size: 144 Copynumber: 1.8 Consensus size: 144
83855 TTATTTAGAT
** *
83865 TAAAATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAATTTTAAAAAATAAATATG
1 TAAAATAATACCAATTTATTAATATTTCAAAAATTAATAAGTAAAAATTTTAAAAAATAAATATG
*
83930 TTTACTGAACAAGACTAAATAGTCATGACTATTTGAATAAGTATCTATTTCAAATCATTTATGAC
66 TTTACTGAACAAGACTAAATAATCATGACTATTTGAATAAGTATCTATTTCAAATCATTTATGAC
83995 AATTTGTTTTGTCA
131 AATTTGTTTTGTCA
* * * * *
84009 TAAAATAATACCAATTTATTAATATTTCAAAAATTAATAATTTAGAGA-TTTAAAAAATGAATCT
1 TAAAATAATACCAATTTATTAATATTTCAAAAATTAATAA-GTAAAAATTTTAAAAAATAAATAT
** * * * *
84073 GTTTACTGAACAAGTTTAAATAATTATGACTGTTTGAATAATTATCTATTTGAAATC
65 GTTTACTGAACAAGACTAAATAATCATGACTATTTGAATAAGTATCTATTTCAAATC
84130 GCTGTAACCT
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
144 101 0.96
145 4 0.04
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (144 bp):
TAAAATAATACCAATTTATTAATATTTCAAAAATTAATAAGTAAAAATTTTAAAAAATAAATATG
TTTACTGAACAAGACTAAATAATCATGACTATTTGAATAAGTATCTATTTCAAATCATTTATGAC
AATTTGTTTTGTCA
Found at i:84784 original size:18 final size:20
Alignment explanation
Indices: 84750--84790 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
84740 ATTTTATTTA
84750 TATAGTTATATATTTATTAT
1 TATAGTTATATATTTATTAT
84770 TATA-TTATA-ATTTATTAT
1 TATAGTTATATATTTATTAT
84788 TAT
1 TAT
84791 TATTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.57
19 5 0.24
20 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TATAGTTATATATTTATTAT
Found at i:85774 original size:5 final size:5
Alignment explanation
Indices: 85757--85842 Score: 77
Period size: 5 Copynumber: 16.4 Consensus size: 5
85747 TTAATATTCT
* *
85757 TTTTA TCTTTA TTTTA TTTTTA TTTTTA TTTTA CTTTA CTTTT- CTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA -TTTTA TTTTA
*
85805 TTTTA TTTT- TTTTA TTTTCA TTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
85843 ATTCAATTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
4 7 0.10
5 36 0.53
6 21 0.31
7 4 0.06
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:85777 original size:6 final size:6
Alignment explanation
Indices: 85756--85834 Score: 60
Period size: 6 Copynumber: 13.7 Consensus size: 6
85746 TTTAATATTC
* * * *
85756 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTA -TTTTA -CTTTA CTTTTC
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
85801 TTTATT- TTATTT- TTTTTA TTTTCA TTTTTA TTTT
1 TTT-TTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTT
85835 GTTTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 16 0.27
6 41 0.68
7 3 0.05
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:85949 original size:61 final size:57
Alignment explanation
Indices: 85869--86389 Score: 582
Period size: 58 Copynumber: 8.7 Consensus size: 57
85859 ATAAAAATAA
* *
85869 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
85926 AAAAAAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 -AAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
*
85989 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCCCTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
86044 AAAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 --AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
86105 AAAAAAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 -AAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
*
86168 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCATTTTTCCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * * *
86224 AAAAAAAGGTTTTTTTTTAGGAAAAATTGAAAGTATCGTATCAATTTTCCTTGAAAATCAAAGTT
1 -AAAAAA---TATTTTTGAGGAAAAGTTG-AA--A--GTATCAATTTTCCTTAAAAAT-AAAATT
86289 TC
56 TC
*
86291 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
86347 AAAAAATCAATTTTTGGGGAAAAGTTGAAAGCATCAATTTTCC
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
86390 CTGCACAAGA
Statistics
Matches: 399, Mismatches: 37, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
55 4 0.01
56 19 0.05
57 14 0.04
58 134 0.34
60 37 0.09
61 125 0.31
62 10 0.03
63 24 0.06
64 1 0.00
66 24 0.06
67 7 0.02
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:85996 original size:119 final size:115
Alignment explanation
Indices: 85869--86389 Score: 586
Period size: 119 Copynumber: 4.4 Consensus size: 115
85859 ATAAAAATAA
* *
85869 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT-AAAATTTCAAAAAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC-AAAAAA
* * * *
85933 GGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
65 ---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
*
85989 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCCCTAAAAAT-AAAATTTCAAAAAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC--AAAAA
86051 AGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
64 A--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
86105 AAAAAAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC-A
1 -AAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAA-ATTTCAA
*
86169 AAAATATTTTTGAGGAAAAGTTGAAAGTATCATTTTTCCTTAAAAATAAAATTTC
61 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * * *
86224 AAAAAAAGGTTTTTTTTTAGGAAAAATTGAAAGTATCGTATCAATTTTCCTTGAAAATCAAAGTT
1 -AAAAAA---TATTTTTGAGGAAAAGTTG-AA--A--GTATCAATTTTCCTTAAAAATCAAAATT
*
86289 TCCAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTC
57 TCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
86347 AAAAAATCAATTTTTGGGGAAAAGTTGAAAGCATCAATTTTCC
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
86390 CTGCACAAGA
Statistics
Matches: 361, Mismatches: 23, Indels: 38
0.86 0.05 0.09
Matches are distributed among these distances:
116 16 0.04
117 3 0.01
118 66 0.18
119 118 0.33
120 4 0.01
121 46 0.13
122 18 0.05
123 14 0.04
124 76 0.21
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (115 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAAAT
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:86175 original size:179 final size:179
Alignment explanation
Indices: 85867--86391 Score: 737
Period size: 179 Copynumber: 2.9 Consensus size: 179
85857 AAATAAAAAT
* *
85867 AAAAAAAA--TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAATTTCAAAA
1 AAAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
85930 AAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAT
66 AAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAT
85995 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAATTTC
131 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAATTTC
86044 AAAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
1 AAAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
86109 AAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAT
66 AAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAT
* *
86174 ATTTTTGAGGAAAAGTTGAAAGTATCATTTTTCCTTAAAAATAAAATTTC
131 ATTTTTGAGGAAAAGTTGAAAGTATCA-ATTTCCCTAAAAATAAAATTTC
* * * * *
86224 -AAAAAAAGGTTTTTTTTTAGGAAAAATTGAAAGTATCGTATCAATTTTCCTTGAAAATCAAAGT
1 AAAAAAAAGG-TATTTTTGAGGAAAAGTTG-AA--A--GTATCAATTTTCCTTAAAAAT-AAAAT
* * * *
86288 TTC-CAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA--TTT
59 TTCAAAAAAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTT
* *
86346 CAAAAAATCAATTTTTGGGGAAAAGTTGAAAGCATCAATTTTCCCT
124 C-AAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCCCT
86392 GCACAAGAAC
Statistics
Matches: 317, Mismatches: 17, Indels: 23
0.89 0.05 0.06
Matches are distributed among these distances:
177 8 0.03
179 158 0.50
180 42 0.13
181 5 0.02
182 71 0.22
183 1 0.00
185 25 0.08
186 7 0.02
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (179 bp):
AAAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
AAAGGTTTTTTTTGAGGAAAACTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAT
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAATTTC
Found at i:97787 original size:8 final size:8
Alignment explanation
Indices: 97759--97864 Score: 94
Period size: 8 Copynumber: 13.5 Consensus size: 8
97749 TACTATGCTT
97759 AAAAAATG
1 AAAAAATG
*
97767 AACAAATG
1 AAAAAATG
97775 AAAAAAATG
1 -AAAAAATG
97784 AAAAAA--
1 AAAAAATG
**
97790 AAATGATG
1 AAAAAATG
97798 AAAAAATG
1 AAAAAATG
*
97806 AAAAAATA
1 AAAAAATG
*
97814 AAAAAATA
1 AAAAAATG
*
97822 AAAAAATA
1 AAAAAATG
97830 AAAAAATGG
1 AAAAAAT-G
97839 AAAAAA-G
1 AAAAAATG
*
97846 GAAAAAT-
1 AAAAAATG
*
97853 AAAAAAGG
1 AAAAAATG
97861 AAAA
1 AAAA
97865 GGAAAAGTGA
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
6 4 0.05
7 11 0.14
8 53 0.65
9 13 0.16
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:97791 original size:11 final size:11
Alignment explanation
Indices: 97775--97835 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
97765 TGAACAAATG
97775 AAAAAAATGAA
1 AAAAAAATGAA
*
97786 AAAAAAATGAT
1 AAAAAAATGAA
*
97797 GAAAAAATGAA
1 AAAAAAATGAA
**
97808 AAAATAAAAAAA
1 AAAA-AAATGAA
97820 TAAAAAAAT-AA
1 -AAAAAAATGAA
97831 AAAAA
1 AAAAA
97836 TGGAAAAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
10 5 0.12
11 24 0.59
12 8 0.20
13 4 0.10
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (11 bp):
AAAAAAATGAA
Found at i:97805 original size:31 final size:31
Alignment explanation
Indices: 97759--97858 Score: 112
Period size: 32 Copynumber: 3.2 Consensus size: 31
97749 TACTATGCTT
*
97759 AAAAAATGAACAAATGAAAAAAATGAAAAA-A
1 AAAAAATGAAAAAATG-AAAAAATGAAAAATA
** *
97790 AAATGATGAAAAAATGAAAAAATAAAAAAATA
1 AAAAAATGAAAAAATGAAAAAAT-GAAAAATA
* *
97822 AAAAAATAAAAAAATGGAAAAAAGGAAAAATA
1 AAAAAATGAAAAAAT-GAAAAAATGAAAAATA
97854 AAAAA
1 AAAAA
97859 GGAAAAGGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
30 7 0.12
31 18 0.32
32 25 0.44
33 7 0.12
ACGTcount: A:0.78, C:0.01, G:0.10, T:0.11
Consensus pattern (31 bp):
AAAAAATGAAAAAATGAAAAAATGAAAAATA
Found at i:97866 original size:20 final size:21
Alignment explanation
Indices: 97823--97880 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
97813 AAAAAAATAA
*
97823 AAAAATAAAAAAATGGAAAAAAGG
1 AAAAATGAAAAAA-GG--AAAAGG
97847 AAAAAT-AAAAAAGGAAAAGG
1 AAAAATGAAAAAAGGAAAAGG
*
97867 AAAAGTGAAAAAAG
1 AAAAATGAAAAAAG
97881 AGGACTCAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 11 0.34
21 7 0.22
22 2 0.06
23 6 0.19
24 6 0.19
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (21 bp):
AAAAATGAAAAAAGGAAAAGG
Found at i:97870 original size:14 final size:14
Alignment explanation
Indices: 97832--97870 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
97822 AAAAAATAAA
97832 AAAATGGAAAAAAGG
1 AAAA-GGAAAAAAGG
**
97847 AAAAATAAAAAAGG
1 AAAAGGAAAAAAGG
97861 AAAAGGAAAA
1 AAAAGGAAAA
97871 GTGAAAAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (14 bp):
AAAAGGAAAAAAGG
Found at i:98926 original size:41 final size:41
Alignment explanation
Indices: 98881--99011 Score: 190
Period size: 41 Copynumber: 3.1 Consensus size: 41
98871 ATGATTGTCA
98881 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
98922 AGGAGCAATTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
98963 AGGAGCAATTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
*
99006 AAGAGC
1 AGGAGC
99012 TTTGGTAAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 52 0.64
42 3 0.04
43 26 0.32
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:99249 original size:16 final size:15
Alignment explanation
Indices: 99202--99266 Score: 55
Period size: 16 Copynumber: 4.3 Consensus size: 15
99192 AATTCAGTTA
99202 TTATTTTATATTATTT
1 TTATTTTAT-TTATTT
* *
99218 TTATTTTTTTTCTTT
1 TTATTTTATTTATTT
*
99233 TGTATTTTATGTA-TT
1 T-TATTTTATTTATTT
99248 TTA--TTATTTATTT
1 TTATTTTATTTATTT
99261 ATTATT
1 -TTATT
99267 ACTATGTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
12 6 0.16
13 2 0.05
14 5 0.13
15 9 0.24
16 16 0.42
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (15 bp):
TTATTTTATTTATTT
Found at i:99343 original size:21 final size:18
Alignment explanation
Indices: 99319--99367 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
99309 TATTTATATG
99319 TATTTTATTTATATAGTTA-
1 TATTTTATTTAT-TA-TTAT
99338 TATATTTATTTATTATTAT
1 TAT-TTTATTTATTATTAT
99357 TATTTT-TTTAT
1 TATTTTATTTAT
99368 CTTGTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.18
18 6 0.21
19 8 0.29
20 9 0.32
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (18 bp):
TATTTTATTTATTATTAT
Found at i:99929 original size:19 final size:20
Alignment explanation
Indices: 99905--99943 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
99895 ATCGATGAAC
99905 TTTCGACGAAAAATC-CAGA
1 TTTCGACGAAAAATCTCAGA
*
99924 TTTCGATGAAAAATCTCAGA
1 TTTCGACGAAAAATCTCAGA
99944 ATCCGGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (20 bp):
TTTCGACGAAAAATCTCAGA
Found at i:100296 original size:5 final size:5
Alignment explanation
Indices: 100283--100450 Score: 69
Period size: 5 Copynumber: 31.4 Consensus size: 5
100273 CCGCTCCAGG
* *
100283 TTTTT TTTTA TTTT- TTTTA TTTT- TTTTGA -ATTA TTTTA TTTTA TTTATTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA -TT-TTA
* * * *
100333 TTTGTT TTTTA TTTGTT TTTTA -TTTA TTAGATTA GGTTTA TTTAATA TTCT-
1 TTT-TA TTTTA TTT-TA TTTTA TTTTA TT---TTA -TTTTA TTT--TA TTTTA
*
100384 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- TTTTA TTTTCA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTT-A
*
100433 TTTTTA TTTTG TTTTA TT
1 -TTTTA TTTTA TTTTA TT
100451 ATTCAATTTT
Statistics
Matches: 126, Mismatches: 15, Indels: 44
0.68 0.08 0.24
Matches are distributed among these distances:
4 20 0.16
5 55 0.44
6 36 0.29
7 11 0.09
8 3 0.02
9 1 0.01
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:100299 original size:11 final size:11
Alignment explanation
Indices: 100283--100453 Score: 57
Period size: 11 Copynumber: 15.1 Consensus size: 11
100273 CCGCTCCAGG
100283 TTTTTTTTTA-
1 TTTTTTTTTAT
100293 -TTTTTTTTA-
1 TTTTTTTTTAT
*
100302 TTTTTTTTGA-
1 TTTTTTTTTAT
* *
100312 -ATTATTTTAT
1 TTTTTTTTTAT
*
100322 TTTATTTATTAT
1 TTT-TTTTTTAT
*
100334 TTGTTTTTTAT
1 TTTTTTTTTAT
*
100345 TTGTTTTTTAT
1 TTTTTTTTTAT
***
100356 TTATTAGATTAGGT
1 TT-TTTTTTTA--T
* *
100370 TTATTTAATATTCT
1 TT-TTT--TTTTAT
*
100384 TTTTATCTTTAT
1 TTTT-TTTTTAT
*
100396 TTTATTTTTAT
1 TTTTTTTTTAT
*
100407 TTTTGTTTTA-
1 TTTTTTTTTAT
*
100417 CTTTTTTTTAT
1 TTTTTTTTTAT
*
100428 TTTCATTTTTAT
1 TTT-TTTTTTAT
100440 TTTGTTTTATTAT
1 TTT-TTTT-TTAT
100453 T
1 T
100454 CAATTTTCTT
Statistics
Matches: 119, Mismatches: 29, Indels: 23
0.70 0.17 0.13
Matches are distributed among these distances:
9 15 0.13
10 16 0.13
11 37 0.31
12 31 0.26
13 7 0.06
14 10 0.08
16 3 0.03
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTTTTTTAT
Found at i:100420 original size:27 final size:28
Alignment explanation
Indices: 100384--100450 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 28
100374 TTAATATTCT
* *
100384 TTTTATCTTTATTTTATTTTTATTTTTG
1 TTTTATCTTTATTTTATTTTCATTTTTA
*
100412 TTTTA-CTTTTTTTTATTTTCATTTTTA
1 TTTTATCTTTATTTTATTTTCATTTTTA
*
100439 TTTTGT-TTTATT
1 TTTTATCTTTATT
100451 ATTCAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 28 0.85
28 5 0.15
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.79
Consensus pattern (28 bp):
TTTTATCTTTATTTTATTTTCATTTTTA
Found at i:100437 original size:7 final size:6
Alignment explanation
Indices: 100383--100442 Score: 56
Period size: 6 Copynumber: 10.7 Consensus size: 6
100373 TTTAATATTC
* * *
100383 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA -CTTT- TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
100427 TTTTCA TTTTTA TTTT
1 TTTTTA TTTTTA TTTT
100443 GTTTTATTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 14 0.33
6 29 0.67
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:100455 original size:23 final size:22
Alignment explanation
Indices: 100412--100464 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
100402 TTTATTTTTG
*
100412 TTTTACTTTTTTTTATTTTCAT
1 TTTTACTTTTTTTTATTTTCAA
100434 TTTTA-TTTTGTTTTATTATTCAA
1 TTTTACTTTT-TTTTATT-TTCAA
100457 TTTT-CTTT
1 TTTTACTTT
100465 AAATAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.15
22 12 0.44
23 11 0.41
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTTACTTTTTTTTATTTTCAA
Found at i:100617 original size:120 final size:119
Alignment explanation
Indices: 100478--100877 Score: 614
Period size: 119 Copynumber: 3.3 Consensus size: 119
100468 TAAAAATAAA
*
100478 AAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
1 AAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AAAAAAA
100543 AAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
64 AAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
*
100599 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AAAAAAAG
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAA
100663 GTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
66 G-TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
* *
100718 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC-CAAAAAA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAAAAA
* *
100782 A-TATTTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAT-AAA-TTTCA
65 AGT-TTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAGTTTCC
*
100836 AAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
100878 CTACACAAGA
Statistics
Matches: 264, Mismatches: 8, Indels: 15
0.92 0.03 0.05
Matches are distributed among these distances:
118 21 0.08
119 136 0.52
120 103 0.39
121 4 0.02
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.35
Consensus pattern (119 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAA
GTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
Found at i:100638 original size:58 final size:57
Alignment explanation
Indices: 100477--100877 Score: 509
Period size: 58 Copynumber: 6.7 Consensus size: 57
100467 ATAAAAATAA
*
100477 AAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
100535 AAAAAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 ----AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
*
100598 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
100655 AAAAAAAGGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 -AAAAAA---TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* *
100717 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
100776 AAAAAAATATTTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAA-ATAAATTTC
1 -AAAAAATA-TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATA-AAATTTC
*
100835 AAAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
100878 CTACACAAGA
Statistics
Matches: 307, Mismatches: 17, Indels: 33
0.86 0.05 0.09
Matches are distributed among these distances:
57 7 0.02
58 102 0.33
59 38 0.12
60 18 0.06
61 83 0.27
62 52 0.17
63 7 0.02
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:101778 original size:181 final size:179
Alignment explanation
Indices: 101369--103278 Score: 1451
Period size: 181 Copynumber: 10.7 Consensus size: 179
101359 TCTGTAACTG
* * * * *
101369 AACATGTTTAAATAGTTATGACAATCTAAAAAATTATCTATTTCAAAGCATTATAACCTTTTGTT
1 AACA-GTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGTT
* * *
101434 TTGTCATAAAACAATTGGTTCTGTTCATACAAGCTTATTTCAAATAAAATAATA-TAAATTTA-T
65 TTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACT-AATTTATT
* * * *
101497 AAT-TTGCAAAAATT-ATAAGTAAAA-ATTAAAAAAATAAATTTGTTTTCT
129 AATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACT
* * * *
101545 AAACATGTTCAAATAGTTATGACTATTTGAATAATTATCAATTTCAAATCATTACAACCTTTTGT
1 -AACA-GTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGT
* * * ** * *
101610 TTTGTCATAAACCAATTTTTTCTATTCATAAAAGCTTATTTGGAATAGAATAATATTAATTTATT
64 TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTATT
* * * *
101675 AAAATTTCAAAATTTAATAAATAAAAGATTTAAAAAATAAATTTGTTTACT
129 AATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACT
* * * *
101726 AACCGAGTTCAAATAGTTATGATTATTTAAACAATTATTTATTTCAAATCATTATGATCTTTTGT
1 AA-C-AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGT
** * *
101791 TTTGTCATAAAACAATTGTTTCTATTCATATGAGTTTATTCAAAATAAAATAATACTAATTTATT
64 TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTATT
* * *** * *
101856 CATATTTTAAAAATTAATAAGTTGGAGATTTAAAAAATAAATTTGTTTATCG
129 AATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA-CT
* * * * * *
101908 AACAAGTTCAAATAGTTATGTCTATTTGAACTATTATCTATTTCAAATCATCATGACATTTTGTT
1 AAC-AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGTT
* * * * * *
101973 TTGTCGTAAAATAATTGTTTCTATTCATACATA-ATTATTCATAAT-AAATAGTACTAATTTATT
65 TTGTCATAAAACAATTGTTTCTATTCATACA-AGCTTATTTAAAATAAAATAATACTAATTTATT
* * * *
102036 AATATTTCAAAAATTATTAAG---AA-ATTTCAAAACTAAATCTGTTTATCG
129 AATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA-CT
* * * * *
102084 AACTAGTTCAAATAGGTT-TGACCATTTGAACAA-TATTCTATCTCAAATCATTATCATC-TTTG
1 AAC-AGTTCAAATA-GTTATGACTATTTAAACAATTA-TCTATTTCAAATCATTATAACCTTTTG
* * * * ** * * * * *
102146 TTTTGTCCTAAAACAATTATTTTTGTTCATACAAGCTTATTCGAAGTAAAATACTGCTAAATTAA
63 TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTAT
* * * *
102211 TAATA-TTCTAAAAATTAATAAGTAAGATATTTAAAAAATAAATGTGTTTGCT
128 TAATATTTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACT
* * * *
102263 GAACTAGTTCAAATAGTTAAGACTA-TTAGAATAATTATCTATTTCAAATCATTCTGACCTTTTG
1 -AAC-AGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCATTATAACCTTTTG
* * * * ** *
102327 TTTAGTCATAAAATAATTGTTTC-AGCTT-ATACATG-TATAATCGAAATAAAGTAATACTAATT
63 TTTTGTCATAAAACAATTGTTTCTA--TTCATACAAGCT-TATTTAAAATAAAATAATACTAATT
* * * * *
102389 TATTAACA-TTCAAAAAATAAATAAATAATAA-ATTTTAAAAAATAAATCTATTTACCG
125 TATTAATATTTC-AAAAATTAATAAGTAA-AAGA-TTTAAAAAATAAATCTGTTTA-CT
* * *
102446 AACAAGTTCAAATAGTTATGACTA-TTAGAATAATTATCTATTTAAAATACA-TATAACCTTTTA
1 AAC-AGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAAT-CATTATAACCTTTTG
* * * * * * ** * *
102509 TTTTATCATAAAATAGTTGTTTCAATTCATAAAAGTTTATCCAAAATAAAATAATATTACTTTAT
63 TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTAT
* * * * * ** *
102574 TAATTTTTCAAAAATTGATAAGTTAGAGATTTAACAAATAAATCAATTTATCA
128 TAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA-CT
* * * * * * * * * *
102627 AATCGGTTTAAATAATTATGGCCATTTAAAAAATAATCTGTTTTAAATTATTATGAA-CTTTTGT
1 AA-CAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTAT-AACCTTTTGT
* * * **
102691 TTTGTCATAAAACAATTGTTTTTCA-TCACACAAGCCTA-TTGGAATAAAATAATACTAATTTAT
64 TTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTAT
* * *
102754 TACTATTTCAAAAATTAATATGTAAGAGATTTAAAAAAATAAATCTGTTTACT
128 TAATATTTCAAAAATTAATAAGTAAAAGATTT-AAAAAATAAATCTGTTTACT
* * *
102807 AA-A--TC----AGTT-T--CTATTTAAACAATTATCTATTTCAAATCGTTATAACATTTTATTT
1 AACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGTTT
* * * * * *
102862 TGTTATAAAATAATTATTTC-AGTTCATATAAGCTTATTTAGAATAAAATAATACTAATTTAATA
66 TGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTAAAATAAAATAATACTAATTTATTA
* *
102926 ATA-TTCTAAAAATTAATAACTAAAAGATTTAAAAAATAAATATGTTTACT
130 ATATTTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACT
* * * * * * * * * *
102976 GAAGCAATGC-AATGGTTA-AACCTATATGAATAATTATCTATTTCAAATCGTTATGACCTTTTA
1 -AA-CAGTTCAAATAGTTATGA-CTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTG
* * * *
103039 TTTTGTTATAAAACAATTGGTTC-AGTTTATACAAGCTTATTAAAAATAAAATAATACTAATTTA
63 TTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTAAAATAAAATAATACTAATTTA
** * * *** * * * *
103103 TTAATATTTTGAATATTAATAAATAAGTTATTTAAAAAGTGAATCTATTTACCA
127 TTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA-CT
* * * * * * ** *
103157 AATCAATTCAAATAATTAT-AGT-TGCGTCAACAATTATCTATTTTAAATTGTTATTACCTTTTG
1 AA-CAGTTCAAATAGTTATGACTAT--TTAAACAATTATCTATTTCAAATCATTATAACCTTTTG
* * * * * ** *
103220 TTTGGTCATATAATAATTGTTTTTGA-TCATTCAAGCTTATTCGAATTAAAATAATACTA
63 TTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTAAAATAAAATAATACTA
103279 TATGAAGGAT
Statistics
Matches: 1396, Mismatches: 271, Indels: 128
0.78 0.15 0.07
Matches are distributed among these distances:
167 1 0.00
168 2 0.00
169 81 0.06
170 49 0.04
171 1 0.00
172 4 0.00
174 2 0.00
175 45 0.03
176 95 0.07
177 116 0.08
178 4 0.00
179 17 0.01
180 293 0.21
181 527 0.38
182 150 0.11
183 9 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (179 bp):
AACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACCTTTTGTTT
TGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAATAAAATAATACTAATTTATTAA
TATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACT
Found at i:102749 original size:719 final size:705
Alignment explanation
Indices: 101395--103175 Score: 1795
Period size: 719 Copynumber: 2.5 Consensus size: 705
101385 TATGACAATC
* * * * **
101395 TAAAAAATTATCTATTTCAAAGCATTATAACCTTTTGTTTTGTCATAAAACAATTGGTTCTGTTC
1 TAAACAATTATCTATTTCAAATCATTATCATC-TTTGTTTTGTCATAAAACAATTATTTCTGTTC
* * *
101460 ATACAAGCTTATTTCAAATAAAATAATATAAATTTATAAT-TTGC-AAAAATT-ATAAGTAAAAA
65 ATACAAGCTTATTTCGAATAAAATAATCTAAATTAATAATATT-CTAAAAATTAATAAGTAAAAA
* * * * * * *
101522 TTAAAAAAATAAATTTGTTTTCTAAACATGTTCAAATAGTTATGACTATTTGAATAATTATCAAT
129 TTTAAAAAATAAATATGTTTACTGAACA-GTTCAAATAGTTAAGACTATTAGAATAATTATCTAT
* * * *
101587 TTCAAATCATTAC-AACCTTTTGTTTTGTCATAAACCAATTTTTTCTA-TTCATAAAAGCTTATT
193 TTCAAATCATT-CTGACCTTTTGTTTTGTCATAAAACAATTGTTTC-AGTT-ATACAAGCTTATT
* * * *
101650 TGGAATAGAATAATATTAATTTATTAAAATTTCAAAATTTAATAAATAA-AAGATTTAAAAAATA
255 AGAAATA-AATAATACTAATTTATTAAAA-TTCAAAAATTAATAAATAATAA-ATTTAAAAAATA
* * * * * * *
101714 AATTTGTTTA-CTAACCGAGTTCAAATAGTTATGATTATTTAAACAATTATTTATTTCAAATCAT
317 AATCTATTTACCAAACCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCAT
* * * * * ** *
101778 TATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATATGAGTTTATTCAAAATAAAATA
382 TATAACCTTTTATTTTATCATAAAACAATTGTTTCAATTCATAAAAGTTTATCCAAAATAAAATA
* * *** *
101843 ATACTAATTTATTCATATTTTAAAAATTAATAAGTTGGAGATTTAAAAAATAAATTTGTTTATCG
447 ATACTAATTTATTAATATTTTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCAATTTATCA
* * * * ** *
101908 AACAAGTTCAAATAGTTATGTCTATTTGAACTATTATCTATTTCAAATCATCATGACATTTTGTT
512 AACAAGTTCAAATAATTATGGCCATTTAAAAAATAATCTATTTCAAATCATCATGACATTTTGTT
* * * * * *
101973 TTGTCGTAAAATAATTGTTTCTATTCATACATAATTATTCATAATAAATAGTACTAATTTATTAA
577 TTGTCATAAAACAATTGTTTCTATTCATACACAACTATTCAGAATAAATAATACTAATTTATTAA
* *
102038 TATTTCAAAAA-T-TAT-TAAGAAATTT-CAAAACTAAATCTGTTTATCGAACTAGTTCAAATAG
642 TATTTCAAAAATTATATGTAAGAAATTTAAAAAAATAAATCTGTTTA-CGAA--A--TC----A-
102099 GTTTGACCATT
697 GTTT--CCATT
* * * *
102110 TGAACAA-TATTCTATCTCAAATCATTATCATCTTTGTTTTGTCCTAAAACAATTATTTTTGTTC
1 TAAACAATTA-TCTATTTCAAATCATTATCATCTTTGTTTTGTCATAAAACAATTATTTCTGTTC
*
102174 ATACAAGCTTA-TTCGAAGTAAAATACTGCTAAATTAATAATATTCTAAAAATTAATAAGTAAGA
65 ATACAAGCTTATTTCGAA-TAAAATAAT-CTAAATTAATAATATTCTAAAAATTAATAAGTAA-A
* * *
102238 TATTTAAAAAATAAATGTGTTTGCTGAACTAGTTCAAATAGTTAAGACTATTAGAATAATTATCT
127 AATTTAAAAAATAAATATGTTTACTGAAC-AGTTCAAATAGTTAAGACTATTAGAATAATTATCT
* * * *
102303 ATTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAATAATTGTTTCAGCTTATACATG-TATAA
191 ATTTCAAATCATTCTGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG-TTATACAAGCT-TAT
* * *
102367 TCGAAATAAAGTAATACTAATTTATTAACATTCAAAAAATAAATAAATAATAAATTTTAAAAAAT
254 TAGAAATAAA-TAATACTAATTTATTAAAATTC-AAAAATTAATAAATAATAAA-TTTAAAAAAT
* *
102432 AAATCTATTTACCGAA-CAAGTTCAAATAGTTATGACTA-TTAGAATAATTATCTATTTAAAATA
316 AAATCTATTTACCAAACCAAGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTAAAAT-
* *
102495 CA-TATAACCTTTTATTTTATCATAAAATAGTTGTTTCAATTCATAAAAGTTTATCCAAAATAAA
379 CATTATAACCTTTTATTTTATCATAAAACAATTGTTTCAATTCATAAAAGTTTATCCAAAATAAA
* * * *
102559 ATAATATTACTTTATTAAT-TTTTCAAAAATTGATAAGTTAGAGATTTAACAAATAAATCAATTT
444 ATAATACTAATTTATTAATATTTT-AAAAATTAATAAGTTAGAGATTTAAAAAATAAATCAATTT
* * * * * *
102623 ATCAAATC-GGTTTAAATAATTATGGCCATTTAAAAAATAATCTGTTTTAAATTATTATGA-ACT
508 ATCAAA-CAAGTTCAAATAATTATGGCCATTTAAAAAATAATCTATTTCAAATCATCATGACA-T
*
102686 TTTGTTTTGTCATAAAACAATTG-TT-T-TTCATCACACAAGCCTATT-GGAATAAAATAATACT
571 TTTGTTTTGTCATAAAACAATTGTTTCTATTCAT-ACACAA--CTATTCAGAAT-AAATAATACT
* * *
102747 AATTTATTACTATTTCAAAAATTAATATGTAAGAGATTTAAAAAAATAAATCTGTTTACTAAATC
632 AATTTATTAATATTTCAAAAATT-ATATGTAAGAAATTTAAAAAAATAAATCTGTTTACGAAATC
*
102812 AGTTTCTATT
696 AGTTTCCATT
* * * * *
102822 TAAACAATTATCTATTTCAAATCGTTATAACAT-TTTATTTTGTTATAAAATAATTATTTCAGTT
1 TAAACAATTATCTATTTCAAATCATTAT--CATCTTTGTTTTGTCATAAAACAATTATTTCTGTT
* * * *
102886 CATATAAGCTTATTTAGAATAAAATAATACTAATTTAATAATATTCTAAAAATTAATAACTAAAA
64 CATACAAGCTTATTTCGAATAAAATAAT-CTAAATTAATAATATTCTAAAAATTAATAAGTAAAA
* * *
102951 GATTTAAAAAATAAATATGTTTACTGAAGCAATGC-AATGGTTAA-ACCTA-TATGAATAATTAT
128 -ATTTAAAAAATAAATATGTTTACTGAA-CAGTTCAAATAGTTAAGA-CTATTA-GAATAATTAT
* * * * *
103013 CTATTTCAAATCGTTATGACCTTTTATTTTGTTATAAAACAATTGGTTCAGTTTATACAAGCTTA
189 CTATTTCAAATCATTCTGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG-TTATACAAGCTTA
* * ** * * *
103078 TTAAAAATAAAATAATACTAATTTATTAATATTTTGAATATTAATAAATAAGT-TATTTAAAAAG
253 TTAGAAAT-AAATAATACTAATTTATTAA-AATTCAAAAATTAATAAATAA-TAAATTTAAAAAA
* * *
103142 TGAATCTATTTACCAAATCAA-TTCAAATAATTAT
315 TAAATCTATTTACCAAACCAAGTTCAAATAGTTAT
103176 AGTTGCGTCA
Statistics
Matches: 888, Mismatches: 134, Indels: 92
0.80 0.12 0.08
Matches are distributed among these distances:
711 38 0.04
712 141 0.16
713 118 0.13
714 62 0.07
715 36 0.04
716 14 0.02
717 22 0.02
718 154 0.17
719 264 0.30
720 7 0.01
721 1 0.00
722 3 0.00
723 12 0.01
724 16 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (705 bp):
TAAACAATTATCTATTTCAAATCATTATCATCTTTGTTTTGTCATAAAACAATTATTTCTGTTCA
TACAAGCTTATTTCGAATAAAATAATCTAAATTAATAATATTCTAAAAATTAATAAGTAAAAATT
TAAAAAATAAATATGTTTACTGAACAGTTCAAATAGTTAAGACTATTAGAATAATTATCTATTTC
AAATCATTCTGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTATACAAGCTTATTAGAAAT
AAATAATACTAATTTATTAAAATTCAAAAATTAATAAATAATAAATTTAAAAAATAAATCTATTT
ACCAAACCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATAACCTT
TTATTTTATCATAAAACAATTGTTTCAATTCATAAAAGTTTATCCAAAATAAAATAATACTAATT
TATTAATATTTTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCAATTTATCAAACAAGTTC
AAATAATTATGGCCATTTAAAAAATAATCTATTTCAAATCATCATGACATTTTGTTTTGTCATAA
AACAATTGTTTCTATTCATACACAACTATTCAGAATAAATAATACTAATTTATTAATATTTCAAA
AATTATATGTAAGAAATTTAAAAAAATAAATCTGTTTACGAAATCAGTTTCCATT
Found at i:103518 original size:278 final size:279
Alignment explanation
Indices: 102997--103519 Score: 613
Period size: 278 Copynumber: 1.9 Consensus size: 279
102987 ATGGTTAAAC
* * * * * *
102997 CTATATGAATAATTATCTATTTCAAATCGTTATGACCTTTTATTTTGTTATAAAACAATTGGTTC
1 CTATATGAAGAATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTGGTTC
* * ** * *
103062 AGTTTATACAAGCTTATTAAAAATAAAATAATACTAATTTATTAATATTTTGAATATTAATAAAT
66 AGTTCATACAAGCTTATTAAAAATAAAATAATACTAATTTAATAATATTTCAAAAACTAATAAAT
** * * *
103127 AAGTTATTTAAAAAGTGAATCTATTTACCAAATCAATTCAAATAATTATAGTTGCGTCAACAATT
131 AAGAGATTTAAAAAGTAAATCTATTTACCAAATCAATTCAAATAATTATAGTTGAGTAAACAATT
* * * * * *
103192 ATCTATTTTAAATTGTTATTACCTTTTGTTTGGTCATATAATAATTGTTTTTGATCATTCAAGCT
196 ATCTATTTCAAATTGTTATGACCTTTTATTTAGTCATAAAACAATTGTTTTTGATCATTCAAGCT
103257 TATTCGAATTAAAATAATA
261 TATTCGAATTAAAATAATA
* * *
103276 CTATATGAAGGATTATCTATTTCAAATCATTATAACATTTTGTTTAGTCATAAAACAATT-GTTT
1 CTATATGAAGAATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTGGTTC
* * * * *
103340 TGTTCATACAAGTTTATTCAAATTAAAATAATACTAATTTAATAATATTTCAAAAACTAATAACT
66 AGTTCATACAAGCTTATTAAAAATAAAATAATACTAATTTAATAATATTTCAAAAACTAATAAAT
* * * * * ** *
103405 AAGAGATTTGAAAAA-TAAATTTGTTTATCAAATCAGTTTAAATGGTTA-AGATT-ATTAAAACA
131 AAGAGATTT-AAAAAGTAAATCTATTTACCAAATCAATTCAAATAATTATAG-TTGAGT-AAACA
* * *
103467 ATTATCTATTTCAAATTGTTCTGGCTTTTTATTTAGTCATAAAACAATTGTTT
193 ATTATCTATTTCAAATTGTTATGACCTTTTATTTAGTCATAAAACAATTGTTT
103520 CAGTTCATAT
Statistics
Matches: 199, Mismatches: 42, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
277 3 0.02
278 139 0.70
279 57 0.29
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (279 bp):
CTATATGAAGAATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTGGTTC
AGTTCATACAAGCTTATTAAAAATAAAATAATACTAATTTAATAATATTTCAAAAACTAATAAAT
AAGAGATTTAAAAAGTAAATCTATTTACCAAATCAATTCAAATAATTATAGTTGAGTAAACAATT
ATCTATTTCAAATTGTTATGACCTTTTATTTAGTCATAAAACAATTGTTTTTGATCATTCAAGCT
TATTCGAATTAAAATAATA
Found at i:103716 original size:459 final size:458
Alignment explanation
Indices: 102828--103737 Score: 960
Period size: 459 Copynumber: 2.0 Consensus size: 458
102818 TATTTAAACA
* * * * *
102828 ATTATCTATTTCAAATCGTTATAACATTTTATTTTGTTATAAAATAATTATTTCAGTTCATATAA
1 ATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTATTTCAGTTCATACAA
* *
102893 GCTTATTTAGAATAAAATAATACTAATTTAATAATATTCTAAAAATTAATAACTAAAAGATTTAA
66 GCTTATTCAGAATAAAATAATACTAATTTAATAATATTCTAAAAACTAATAACTAAAAGATTTAA
* * * *
102958 AAAATAAATATGTTTACTGAAGCAATGCAATGGTTAAACCTATATGAATAATTATCTATTTCAAA
131 AAAATAAATATGTTTACTAAAGCAATGAAATGGTTAAACCTATATAAACAATTATCTATTTCAAA
* * *
103023 TCGTTATGACCTTTTATTTTGTTATAAAACAATTGGTTCAGTTTATACAAGCTTATTAAAAATAA
196 TCGTTATGACCTTTTATTTAGTCATAAAACAATTGGTTCAGTTCATACAAGCTTATTAAAAATAA
* * * ** * *
103088 AATAATACTAATTTATTAATATTTTGAATATTAATAAATAAGTTATTTAAAAAGTGAATCTATTT
261 AATAATACGAATTTATTAACATTTTGAAAATTAATAAATAAGAGATTTAAAAAATAAATCTATTT
** * * * ** * *
103153 ACCAAATCAATTCAAATAATTATAGTTGCGTCAACAATTATCTATTTTAAATTGTTATTACCTTT
326 ACCAAATCAAGCCAAATAATTATACTT-CGTCAACAATTATCAATTTAAAATCATTATAAACTTT
* * * * ** * * ** *
103218 TGTTTGGTCATATAATAATTGTTTTTGATCATTCAAGCTTATTCGAATTAAAATAATACTATATG
390 TGTTTGGTCAAAAAACAATTATTTCAGATAATACAAGCTTAGACGAAATAAAATAATACTATATG
103283 AAGG
455 AAGG
* * *
103287 ATTATCTATTTCAAATCATTATAACATTTTGTTTAGTCATAAAACAATTGTTT-TGTTCATACAA
1 ATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTATTTCAGTTCATACAA
* *
103351 GTTTATTCA-AATTAAAATAATACTAATTTAATAATATT-TCAAAAACTAATAACTAAGAGATTT
66 GCTTATTCAGAA-TAAAATAATACTAATTTAATAATATTCT-AAAAACTAATAACTAAAAGATTT
* * * * * *
103414 GAAAAATAAATTTGTTTA-TCAAATCAGTTTAAATGGTTAAGA-TTAT-TAAAACAATTATCTAT
129 AAAAAATAAATATGTTTACT-AAAGCA-ATGAAATGGTTAA-ACCTATAT-AAACAATTATCTAT
* * * * * * * *
103476 TTCAAATTGTTCTGGCTTTTTATTTAGTCATAAAACAATTGTTTCAGTTCATATAAGTTTATTCA
190 TTCAAATCGTTATGACCTTTTATTTAGTCATAAAACAATTGGTTCAGTTCATACAAGCTTATTAA
* * *
103541 GAATAAATTAATAGGAATTTATTAACA-TTTGAAAAATTAATAAGA-AAGAGATTTAAAAAAATA
255 AAATAAAATAATACGAATTTATTAACATTTTG-AAAATTAATAA-ATAAGAGATTT-AAAAAATA
* * *** * * * * *
103604 AATTTGTTTAGTGAA-CAAGCCAATTAGTTATTACTAT-TTGAACAATTGTCAATTTAAAATCAT
317 AATCTATTTACCAAATCAAGCCAAATAATTA-TACT-TCGTCAACAATTATCAATTTAAAATCAT
*
103667 TATAAACTTTTGATTT-GTCAAAAAACAATTATTTCAGTTAATACAAGCTTAGACGAAATAAAAT
380 TATAAACTTTTG-TTTGGTCAAAAAACAATTATTTCAGATAATACAAGCTTAGACGAAATAAAAT
103731 AATACTA
444 AATACTA
103738 ATTTATTAGT
Statistics
Matches: 365, Mismatches: 74, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
457 4 0.01
458 88 0.24
459 248 0.68
460 24 0.07
461 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (458 bp):
ATTATCTATTTCAAATCATTATAACATTTTATTTAGTCATAAAACAATTATTTCAGTTCATACAA
GCTTATTCAGAATAAAATAATACTAATTTAATAATATTCTAAAAACTAATAACTAAAAGATTTAA
AAAATAAATATGTTTACTAAAGCAATGAAATGGTTAAACCTATATAAACAATTATCTATTTCAAA
TCGTTATGACCTTTTATTTAGTCATAAAACAATTGGTTCAGTTCATACAAGCTTATTAAAAATAA
AATAATACGAATTTATTAACATTTTGAAAATTAATAAATAAGAGATTTAAAAAATAAATCTATTT
ACCAAATCAAGCCAAATAATTATACTTCGTCAACAATTATCAATTTAAAATCATTATAAACTTTT
GTTTGGTCAAAAAACAATTATTTCAGATAATACAAGCTTAGACGAAATAAAATAATACTATATGA
AGG
Found at i:103826 original size:181 final size:180
Alignment explanation
Indices: 103287--104019 Score: 461
Period size: 181 Copynumber: 4.0 Consensus size: 180
103277 TATATGAAGG
* * * * * *
103287 ATTATCTATTTCAAATCATTAT-AACATTTTGTTTAGTCATAAAACA-ATTGTTT-TGTTCATAC
1 ATTATCAATTTAAAATCATTATAAAC-TTTTATTTTGTCAAAAAACACATT-TTTCT-TACATAC
* ** * * * * *
103349 AAGTTTATTC-AAATTAAAATAATACTAATTTAATAATATTTCAAAAACTAATAACTAAGAGATT
63 AAGCTTAGACGAAA-GAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATT
* * * * ** * ** **
103413 TGAAAAATAAATTTGTTTATCAAATCAGTTTAAATGGTTAAGATTATTAAAACA
127 TAAAAAATAAATCTGTTTACCAAATCAGTTAAAATAATTATGACCATTTGAACA
* * ** * ** * *
103467 ATTATCTATTTCAAATTGTTCT-GGCTTTTTATTTAGTCATAAAACA-ATTGTTTCAGTT-CATA
1 ATTATCAATTTAAAATCATTATAAAC-TTTTATTTTGTCAAAAAACACATT-TTTC--TTACATA
* * ** * * ** * *
103529 TAAGTTTATTC-AGAATAAATTAATAGGAATTTATTAACATTTGAAAAATTAATAAG-AAAGAGA
62 CAAGCTTAGACGA-AAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAA-AGA
* *** ** * * * *
103592 TTTAAAAAAATAAATTTGTTTAGTGAA-CAAG-CCAATTAGTTATTACTATTTGAACA
125 TTT-AAAAAATAAATCTGTTTACCAAATC-AGTTAAAATAATTATGACCATTTGAACA
*
103648 ATTGTCAATTTAAAATCATTATAAACTTTTGA-TTTGTCAAAAAACA-ATTATTTCAGTTA-ATA
1 ATTATCAATTTAAAATCATTATAAACTTTT-ATTTTGTCAAAAAACACATT-TTTC--TTACATA
* * * *
103710 CAAGCTTAGACGAAATAAAATAATACTAATTTATTAGTATTATC-TAAATTAATAAGTAAAATAT
62 CAAGCTTAGACGAAAGAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAAAGAT
* **
103774 TTAAAAAATAAATCTGTTTACCAAATCAGTTAAAATAATTATGGCCATTTGAATG
126 TTAAAAAATAAATCTGTTTACCAAATCAGTTAAAATAATTATGACCATTTGAACA
* * * * *
103829 ATTATCAATTTCAAATCGTTATGACCTTTTATTTTGTCATAAAACATCATTTTTCTTATCATACA
1 ATTATCAATTTAAAATCATTATAAACTTTTATTTTGTCAAAAAACA-CATTTTTCTTA-CATACA
*** * * * * * *
103894 AGCTTATTTGAAAGAAAATATTATTAATTTATTAATATTTCAAAAATTAGTATGTAAGAGATTTT
64 AGCTTAGACGAAAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTA
* * * * *
103959 AAAAATAAATCTGTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAACA
129 AAAAATAAATCTGTTTACCAAATCAGTTAAAATAATTATGACCATTTGAACA
104011 ATTATCAAT
1 ATTATCAAT
104020 CTCAAATCGT
Statistics
Matches: 439, Mismatches: 93, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
180 73 0.17
181 220 0.50
182 142 0.32
183 4 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
ATTATCAATTTAAAATCATTATAAACTTTTATTTTGTCAAAAAACACATTTTTCTTACATACAAG
CTTAGACGAAAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
AAATAAATCTGTTTACCAAATCAGTTAAAATAATTATGACCATTTGAACA
Found at i:104848 original size:332 final size:332
Alignment explanation
Indices: 104242--104848 Score: 982
Period size: 332 Copynumber: 1.8 Consensus size: 332
104232 GCTTATTCTG
* * * * **
104242 TTGGATTATTGGGTCTAACGGTCTCCTTTAGGGACTCAGTATGTCGATTCATCTGGGTGGGGTAT
1 TTGGATTATGGGGTCCAACGGTCTCCCTTAGAGACTCAGTATGTCGATTCATCTGGGTAAGGTAT
* *
104307 CCCATGGTGGATCAAATTTCGGTGTATGGCAACCCAACCTGTCAAGGCCCAATGAGTGAGGTATC
66 CCCATGGTGGATCAAATTTCGGTGTATGGCAACCAAACCTGCCAAGGCCCAATGAGTGAGGTATC
* * * *
104372 CCATTAAGGCTTTGCGAAGCCTCTTATGTCCACCTGTCGCTTGGTACAGGGCTCTGCGCTACCAA
131 CCATGAAGGCTTTGCAAAGCCCCTTATGTCCACCTGTCGCTTAGTACAGGGCTCTGCGCTACCAA
* * *
104437 AACAGAATAAGGAAATAGAGTTGCGCCTTCACTATCAGCTATAACTTTTGGTGTAGTGGTAAGTG
196 AACAGAAAAAGGAAATAGAGTTGCACCTTCACTATCAACTATAACTTTTGGTGTAGTGGTAAGTG
104502 CTTGATCCTGAAAACTAGTATAAGAGCAAGGTTGCAGGTTCGAGTCCCCCAGGTGCTGTTGGGAG
261 CTTGATCCTGAAAACTAGTATAAGAGCAAGGTTGCAGGTTCGAGTCCCCCAGGTGCTGTTGGGAG
104567 GAGATTA
326 GAGATTA
* *
104574 TTGGATTATGGGGTCCAACGGTCTCCCTTAGAGACTCGGTATGTCGATTCATTTGGGTAAGGTAT
1 TTGGATTATGGGGTCCAACGGTCTCCCTTAGAGACTCAGTATGTCGATTCATCTGGGTAAGGTAT
* *
104639 CCCATGGTGGATCGAATTTCGGTGTATGGCAACCAAACC-GACCAAGGCCCAATGGGTGAGGTAT
66 CCCATGGTGGATCAAATTTCGGTGTATGGCAACCAAACCTG-CCAAGGCCCAATGAGTGAGGTAT
*
104703 CTCATGAAGGCTTTGCAAAGCCCCTTATGTCCACCTGTCGCTTAGTACAGGGCTCTGCGCTACCA
130 CCCATGAAGGCTTTGCAAAGCCCCTTATGTCCACCTGTCGCTTAGTACAGGGCTCTGCGCTACCA
* * * *
104768 AAAGAGAAAAAGGAAATAGTGTTGCACCTTCGCTATCAACTATAGCTTTTGGTGTAGTGGTAAGT
195 AAACAGAAAAAGGAAATAGAGTTGCACCTTCACTATCAACTATAACTTTTGGTGTAGTGGTAAGT
104833 GCTTGATCCTGAAAAC
260 GCTTGATCCTGAAAAC
104849 AATATTGTTA
Statistics
Matches: 250, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
331 1 0.00
332 249 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (332 bp):
TTGGATTATGGGGTCCAACGGTCTCCCTTAGAGACTCAGTATGTCGATTCATCTGGGTAAGGTAT
CCCATGGTGGATCAAATTTCGGTGTATGGCAACCAAACCTGCCAAGGCCCAATGAGTGAGGTATC
CCATGAAGGCTTTGCAAAGCCCCTTATGTCCACCTGTCGCTTAGTACAGGGCTCTGCGCTACCAA
AACAGAAAAAGGAAATAGAGTTGCACCTTCACTATCAACTATAACTTTTGGTGTAGTGGTAAGTG
CTTGATCCTGAAAACTAGTATAAGAGCAAGGTTGCAGGTTCGAGTCCCCCAGGTGCTGTTGGGAG
GAGATTA
Found at i:105016 original size:53 final size:53
Alignment explanation
Indices: 104953--105059 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
104943 ACATGCTCTT
104953 AAGTTTTATATTTTGGTACTAAATAAATAATATGATTTTCAAAGCTTAAACAA
1 AAGTTTTATATTTTGGTACTAAATAAATAATATGATTTTCAAAGCTTAAACAA
*
105006 AAGTTTTATATTTTGGTACTAAATAAATAATATGATTTTCAAAGGTTAAACAA
1 AAGTTTTATATTTTGGTACTAAATAAATAATATGATTTTCAAAGCTTAAACAA
105059 A
1 A
105060 CCTTTCTTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (53 bp):
AAGTTTTATATTTTGGTACTAAATAAATAATATGATTTTCAAAGCTTAAACAA
Found at i:105095 original size:17 final size:17
Alignment explanation
Indices: 105073--105106 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
105063 TTCTTTGTTT
105073 TCATATTTCTCAAACCA
1 TCATATTTCTCAAACCA
105090 TCATATTTCTCAAACCA
1 TCATATTTCTCAAACCA
105107 AATCTATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (17 bp):
TCATATTTCTCAAACCA
Found at i:107080 original size:34 final size:34
Alignment explanation
Indices: 107042--107111 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
107032 TATATATTGA
107042 ATGTGAATCAATGAAGAGGAAATATAAGAAAATG
1 ATGTGAATCAATGAAGAGGAAATATAAGAAAATG
107076 ATGTGAATCAATGAAGAGGAAATATAAGAAAATG
1 ATGTGAATCAATGAAGAGGAAATATAAGAAAATG
107110 AT
1 AT
107112 TTCAAAGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.23, T:0.21
Consensus pattern (34 bp):
ATGTGAATCAATGAAGAGGAAATATAAGAAAATG
Found at i:110662 original size:37 final size:38
Alignment explanation
Indices: 110605--110680 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
110595 TCAAGTTGTG
*
110605 TTGGATTAGGATACATAAATTGA-GGGGAGTTTTGCCA
1 TTGGATTAGGATACACAAATTGAGGGGGAGTTTTGCCA
*
110642 TTGGATTAGGATGCACAAATTGAGGGGGAGTTTTGCCA
1 TTGGATTAGGATACACAAATTGAGGGGGAGTTTTGCCA
110680 T
1 T
110681 GCATTGTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 21 0.58
38 15 0.42
ACGTcount: A:0.28, C:0.09, G:0.32, T:0.32
Consensus pattern (38 bp):
TTGGATTAGGATACACAAATTGAGGGGGAGTTTTGCCA
Found at i:112759 original size:182 final size:181
Alignment explanation
Indices: 112453--115170 Score: 771
Period size: 181 Copynumber: 15.2 Consensus size: 181
112443 AACATATTCG
* * * * * *** *
112453 AAATAAAATAATCCAAATTTATTAACA-TTC-GAAATTAATAAGAAAAATATTTTAAAAAATAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-ACAAGGGTTTAAAAAAATAAA
* * *** *
112516 TCTATTTATTGAACAAGTTCAAATAGTTTTGACTATTTAAACAATTATTTATTTAAAATCATTAT
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTAT
* * * * *
112581 GACTTTTTGTTTTGA-CGTAAAACAGTTGTTTCAGTTCATAAAAAGCTTGCCCA
130 GACCTTTTGTTTT-ATCATAAAACAATTGTTTCAATTCAT-AAAAGCTTACCCA
* *
112634 AAATAAAATAATACTAATTTCTTAATATTTTAAAAATTAATAAACAAGGGTTTAAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGGGTTTAAAAAAATAAAT
* * * * * * *
112699 TTGTTTATCGAATAAATTCACATAGTTGCAACTATTTGAACATTTGTCTATTTAAAATCATTATG
66 CTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTATG
* **
112764 ACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTATTCA
131 ACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * ** * * *
112815 AAATAAAATAATACTAATTTATTACTATTTCGAAAATTAATAAGTAAGTGATTT-AAATAGTAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAG-GGTTTAAAAAAATAAA
* * * **** * * * **
112879 TCTATTTATCGAATC-AATTAAAAAAATTATGGCCATTTCAACAATTATCTATTTTAAATTGTTA
65 TCTATTTATCGAA-CAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTA
* ** * * * * * ****
112943 TTACCTTTTGTTTGGTCATATAATAATTTTTTTAA-TCATACAAGCTTATTTG
129 TGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * * * ** * *
112995 AGATAAAATAATTCTAATTTATTAATCTTTTAAAAATTAATAAGTAATAGATTT-AAAAAATAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAA-GGGTTTAAAAAAATAAA
* * * * * *** * * * * * * *
113059 TCTATTTACCAAACTAGTTTAAATAGTTATGACTATGTGAACAATTGTATACTTCAAATCGTTAT
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTAT
* * * * * * ** ** *
113124 AACCTTTTATTTTATTATAAAATAATTATTTTC-GTTCATACTAGCTTATTCG
130 GACCTTTTGTTTTATCATAAAACAATT-GTTTCAATTCATAAAAGCTTACCCA
* * * * * *
113176 AAATAAAATAATACTAATCTAATAAT-TTATCAAAAGTTAAT-AACTAAGAGATTT-AAGAAACA
1 AAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAAC-AAG-GGTTTAAAAAAATA
* * * * * * * * * * *
113238 AATGTGTTTCT-GAACCAGTTCAAATAGTT-AAGACTATATAAACAATTCTCTAATTCAAATTAT
63 AATCTATTTATCGAACAAATTCAAATAGTTGCA-ACTATTTAAACAATTATCTATTTAAAATCAT
* * * * ****
113301 TATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTAGATG
127 TATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* ** ** **
113356 AAATAAAATAATACTAATTTATTAACATTTCCTAAATTAATAAGTAAGAAATTT-AAAAAATAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAG-GGTTTAAAAAAATAAA
* * * * * * * **** * * * * * * *
113420 TATGTTTA-CCAA-ATCAGTAAAATAATTATGGCCATTTGAACGATTATCAATTTCAAATCGTTT
65 TCTATTTATCGAACA-AATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTA
* * * ** ****
113483 TGACATTTT-TTTTTTTATAAAACAATTGTTT-TTTATCATACAAA-CTTATTTG
129 TGACCTTTTGTTTTATCATAAAACAATTGTTTCAAT-TCATA-AAAGCTTACCCA
* * * *
113535 AAATAAAATAATACTAATTTGTTAGTATTTCACAAATTAATATGTAA-AA-GATTT-AAAAAATA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATA---AACAAGGGTTTAAAAAAATA
* * * * * *** * * * ** *
113597 AGTCAATTTATCAAACCAATTCAAATAATTATGACTATTTGAATAATTATCAATTGCAAATCGTT
63 AATCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATT
* * * * * * **
113662 AAGATC-TTTGTTTTGTCATAAAATAATTATTTCTAA-TCTTAAAAGCTTATTC-
128 ATGACCTTTTGTTTTATCATAAAACAATTGTTTC-AATTCATAAAAGCTTACCCA
*** * * ** *** * *
113714 GGTTAAAAATAATACTAATTTAATAATA-TTCTAAAAATTAAT-AA-ATGTATTTGTCAAACTAG
1 AAAT-AAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAACAAGGGTTTAAAAAAATAA
* * * * * * * * * * *
113776 TTCAAATAAT-TAA-AACTATT-AGAATAATT--ATCTCTTTCAAATC-GTTATGACATTTTGTT
64 ATCTATTTATCGAACAA--ATTCA-AATAGTTGCAACTATTT-AAA-CAATTAT--C-TATT-TA
* * ** * *** * * ** * *
113835 TAGTCA-TA--AAATATTTGTTTCAT-ATCTTACAA--GCTT--ATTCAAAAGAAAATAATCC-
120 AAATCATTATGACCT-TTTGTTTTATCATAAAACAATTGTTTCAATTCATAA-AAGCTTACCCA
** * * * * ** **
113890 AAAT-TTATTA-AC--ATTCA--AAAAATT----AA-TAAGCAA-AA-TATTTGAAAAAAATAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGGGTTT-AAAAAAATAAA
* * *** ** * *
113942 TTTATTTATCGAACAAGTTCAAATAGTTATGACTATTTAATTAATTATTTATTTAAAATCGTTAT
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTAT
* * * * * * *
114007 AACCTTTTGTTATGA-CATAAAATAATTATTTTAGTTCATAAAAGCTTATCCA
130 GACCTTTTGTT-TTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * *
114059 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAGGTTTGAAAAAATAAAG
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGGGTTTAAAAAAATAAA-
** * *** * * *
114124 T-TGCTTATCGAATAAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTAAATTCATTAT
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTAT
* * * * **
114188 GATCTTTTCTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCA
130 GACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * * *** * * *
114240 AAATAAAATAATACTAATTTAATATTTTTTCAAAAATTAATAGGTAAGTGATTT-AAAAAGTGAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAG-GGTTTAAAAAAATAAA
* * ** * ** * * * * * * *
114304 TCTGTTTACCGAATTAATTCAAATAATTATAGCCATTTCAATAATTATCCATTTCAAATTATTAT
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTAT
** * ** * * ****
114369 TTCCTTTTGTTTGATCATATAAA-AATTGTTT-TTTATCATATAAGTTTATTTG
130 GACCTTTTGTTTTATCATA-AAACAATTGTTTCAAT-TCATAAAAGCTTACCCA
* * ** *
114421 GAATAAAATAATACTAATTTATTAATCTTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAG-GGTTTAAAAAAATAAA
* * * * *** * * *
114485 TCTATTTACCAAACTAATTTAAATAGTTATGACTATTTGAACAATTGTATAATTT-AAATCATTA
65 TCTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCT-ATTTAAAATCATTA
* * * * * * * *** ** ****
114549 TAACATTTTGTTCTGTTATAAAATAATTATTTTTGTTCATACTAGCTTATTTG
129 TGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * * *
114602 AAATAAAATAATACTAATGTAATAATATTAT-GAAAATTAAT-AACTAAGAGATTT-AAAAAATA
1 AAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAAC-AAG-GGTTTAAAAAAATA
* * * * * * * * * * *
114664 AATTTGTTTACCGAACCAGTTCAAATAGTT-AAGACTATATGAATAATTATCGATTTCAAATCAT
63 AATCTATTTATCGAACAAATTCAAATAGTTGCA-ACTATTTAAACAATTATCTATTTAAAATCAT
** * * ** * * *
114728 TATGACCTTTTGTTTTATCATAAAGTAATTTTTTCAATTCTTATCACCTTACTCG
127 TATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * ** * **
114783 AAATAAAATAA-AATAAATTTATTGATATTTCAAAAATTAATAAGTAAGAGATTT-ATTAAATAA
1 AAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAACAAG-GGTTTAAAAAAATAA
* * * * * * * * *** ** *
114846 TTTTGTTTACCTAACTAGTGT-AAATAATTATGACTATTTAAGTAATTATCTATTTCAAATCATT
64 ATCTATTTATCGAACAAAT-TCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATT
* * * * *** * * ****
114910 ATAACCTTTTGTTTTGTCATAAAACAAATATTTTTGTTCATATAAGTTTATTTG
128 ATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* * * *
114964 AAATAAAATAATACGAATCTATTAATATTTCAAAAATTAAT-AA-AA-GATTTTAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGGGTTTAAAAAAATAAAT
* * * * * *** * * * * *
115026 TTGTTTATCAAACCAGTTCAAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATCATTATG
66 CTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTATG
* * * * * **
115091 ACTTTTTGTTTGT-T-ATAAAACAATAGTTTCTATTCTTACAAGCTTATTCA
131 ACCTTTTGTTT-TATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
* *
115141 AATTAAAATAATTCTAATTTATTAATATTT
1 AAATAAAATAATACTAATTTATTAATATTT
115171 TGACAATTAA
Statistics
Matches: 1926, Mismatches: 510, Indels: 206
0.73 0.19 0.08
Matches are distributed among these distances:
162 4 0.00
163 5 0.00
164 14 0.01
165 32 0.02
166 9 0.00
167 9 0.00
168 7 0.00
169 13 0.01
170 5 0.00
171 6 0.00
173 6 0.00
174 4 0.00
175 9 0.00
176 16 0.01
177 73 0.04
178 97 0.05
179 112 0.06
180 449 0.23
181 917 0.48
182 129 0.07
183 10 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGGGTTTAAAAAAATAAAT
CTATTTATCGAACAAATTCAAATAGTTGCAACTATTTAAACAATTATCTATTTAAAATCATTATG
ACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATAAAAGCTTACCCA
Found at i:112932 original size:181 final size:181
Alignment explanation
Indices: 112447--113757 Score: 1047
Period size: 180 Copynumber: 7.3 Consensus size: 181
112437 AAAGCTAACA
* * * * * * *
112447 TATTCGAAATAAAATAATCCAAATTTATTAACA-TTC-GAAATTAATAAGAAAAATATTTTAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTTAAAA
* * * * *
112510 AATAAATCTATTTATTGAA-CAAGTTCAAATAGTTTTGACTATTTAAACAATTATTTATTTAAAA
65 AATAAATCTATTTATCGAATCAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
* * * * * *
112574 TCATTATGACTTTTTGTTTTGA-CGTAAAACAGTTGTTTCAGTTCATAAAAAGCT
129 TCGTTATGACCTTTTGTTTT-ATCATAAAACAATTGTTTCAATTCAT-ACAAGCT
*** * * * ** *
112628 TGCCCAAAATAAAATAATACTAATTTCTTAATATTTTAAAAATTAATAAACAAG-GGTTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-AAAA
* * * * *** * * *
112692 AATAAATTTGTTTATCGAATAAATTCACATAGTTGCAACTATTTGAACATTTGTCTATTTAAAAT
65 AATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
*
112757 CATTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
130 CGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
* * * * *
112809 TATTCAAAATAAAATAATACTAATTTATTACTATTTCGAAAATTAATAAGTAAGTGATTTAAATA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * * * * * *
112874 GTAAATCTATTTATCGAATCAATTAAAAAAATTATGGCCATTTCAACAATTATCTATTTTAAATT
66 ATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC
* ** * * * *
112939 GTTATTACCTTTTGTTTGGTCATATAATAATTTTTTTAA-TCATACAAGCT
131 GTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
* * * * * *
112989 TATTTGAGATAAAATAATTCTAATTTATTAATCTTTTAAAAATTAATAAGTAATAGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * * * * *
113054 ATAAATCTATTTA-CCAAACTAGTTTAAATAGTTATGACTATGTGAACAATTGTATACTTCAAAT
66 ATAAATCTATTTATCGAATC-AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
* * * * * * *
113118 CGTTATAACCTTTTATTTTATTATAAAATAATTATTTTC-GTTCATACTAGCT
130 CGTTATGACCTTTTGTTTTATCATAAAACAATT-GTTTCAATTCATACAAGCT
* * * * *
113170 TATTCGAAATAAAATAATACTAATCTAATAAT-TTATCAAAAGTTAATAACTAAGAGATTTAAGA
1 TATTCGAAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGATTTAAAA
* * * * * * * * * * *
113234 AACAAATGTGTTTCT-GAACCAGTTCAAATAGTTAAGACTATATAAACAATTCTCTAATTCAAAT
65 AATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
** * * *
113298 TATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCT
130 CGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
* * ** *
113350 TAGAT-GAAATAAAATAATACTAATTTATTAACATTTCCTAAATTAATAAGTAAGAAATTTAAAA
1 TA-TTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAA
* * * * * * * * * * *
113414 AATAAATATGTTTACCAAATC-AGTAAAATAATTATGGCCATTTGAACGATTATCAATTTCAAAT
65 AATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
* * * * ** *
113478 CGTTTTGACATTTT-TTTTTTTATAAAACAATTGTTT-TTTATCATACAAACT
130 CGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAAT-TCATACAAGCT
* * * * * *
113529 TATTTGAAATAAAATAATACTAATTTGTTAGTATTTCACAAATTAATATGTAAAAGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * * * * *
113594 ATAAGTCAATTTATCAAACCAATTCAAATAATTATGACTATTTGAATAATTATCAATTGCAAATC
66 ATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC
* * * * * * *
113659 GTTAAGATC-TTTGTTTTGTCATAAAATAATTATTTCTAA-TCTTAAAAGCT
131 GTTATGACCTTTTGTTTTATCATAAAACAATTGTTTC-AATTCATACAAGCT
** *
113709 TATTCG-GTTAAAAATAATACTAATTTAATAATA-TTCTAAAAATTAATAA
1 TATTCGAAAT-AAAATAATACTAATTTATTAATATTTC-AAAAATTAATAA
113758 ATGTATTTGT
Statistics
Matches: 889, Mismatches: 218, Indels: 47
0.77 0.19 0.04
Matches are distributed among these distances:
178 2 0.00
179 113 0.13
180 415 0.47
181 246 0.28
182 99 0.11
183 14 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
ATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC
GTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
Found at i:113131 original size:361 final size:356
Alignment explanation
Indices: 112447--115217 Score: 1830
Period size: 362 Copynumber: 7.7 Consensus size: 356
112437 AAAGCTAACA
* * * * * * *
112447 TATTCGAAATAAAATAATCCAAATTTATTAACA-TTCGAAATTAATAAGAAAAATATTTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAGTAAGAGA-TTT-AAAA
* * * * *
112511 ATAAATCTATTTATTGAA-CAAGTTCAAATAGTTTTGACTATTTAAACAATTATTTATTTAAAAT
64 ATAAATCTATTTATCGAACCAA-TTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAAT
** * * * * * * * * * * ***** *
112575 CATTATGACTTTTTGTTTTGACGTAAAACAGTTGTTTCAGTTCATAAAAAGCTTGCCCAAAATAA
128 TGTTATAACCTTTTGTTTTGTCATAAAATAATTTTTTTA-ATCAT-ACAAGCTTATTTGAGATAA
* ** * * *
112640 AATAATACTAATTTCTTAATATTTTAAAAATTAATAAACAAGGGTTTAAAAAAATAAATTTGTTT
191 AATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAAGATTT-AAAAAATAAATATGTTT
* * * * * *** * * * *
112705 ATCGAATAAATTCACATAGTTGCAACTATTTGAACATTTGTCTATTTAAAATCATTATGACCTTT
255 ACCAAATAAGTTAAAATAGTTATGACTATTTGAACAATTGTATATTTCAAATCGTTATGACCTTT
*
112770 TGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCT
320 T-TTTTATTATAAAACAATTGTTTC-ATTCATACAAGCT
* * *
112809 TATTCAAAATAAAATAATACTAATTTATTACTATTTCGAAAATTAATAAGTAAGTGATTTAAATA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTC-AAAATTAATAAGTAAGAGATTTAAA-A
* * * * * * * *
112874 GTAAATCTATTTATCGAATCAATTAAAAAAATTATGGCCATTTCAACAATTATCTATTTTAAATT
64 ATAAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATT
* * *
112939 GTTATTACCTTTTGTTTGGTCATATAATAATTTTTTTAATCATACAAGCTTATTTGAGATAAAAT
129 GTTATAACCTTTTGTTTTGTCATAAAATAATTTTTTTAATCATACAAGCTTATTTGAGATAAAAT
* * * *
113004 AATTCTAATTTATTAATCTTTTAAAAATTAATAAGTAATAGATTTAAAAAATAAATCTATTTACC
194 AATACTAATTTATTAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTTACC
* * * *
113069 AAACT-AGTTTAAATAGTTATGACTATGTGAACAATTGTATACTTCAAATCGTTATAACCTTTTA
258 AAA-TAAGTTAAAATAGTTATGACTATTTGAACAATTGTATATTTCAAATCGTTATGACCTTTT-
* * * *
113133 TTTTATTATAAAATAATTATTTTCGTTCATACTAGCT
321 TTTTATTATAAAACAATT-GTTTCATTCATACAAGCT
* * *
113170 TATTCGAAATAAAATAATACTAATCTAATAAT-TTATCAAAAGTTAATAACTAAGAGATTTAAGA
1 TATTCGAAATAAAATAATACTAATTTATTAATATT-TCAAAA-TTAATAAGTAAGAGATTTAA-A
* * * * * * * * * *
113234 AACAAATGTGTTTCT-GAACCAGTTCAAATAGTTAAGACTATATAAACAATTCTCTAATTCAAAT
63 AATAAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAAT
* * * * * ** *
113298 TATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTAGATGAAATAAA
128 TGTTATAACCTTTTGTTTTGTCATAAAATAATTTTTTTA-ATCATACAAGCTTATTTGAGATAAA
* *** *
113363 ATAATACTAATTTATTAACATTTCCTAAATTAATAAGTAAGAAATTTAAAAAATAAATATGTTTA
192 ATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTTA
* * * * * * * *
113428 CCAAATCAG-TAAAATAATTATGGCCATTTGAACGATTATCA-ATTTCAAATCGTTTTGACATTT
256 CCAAATAAGTTAAAATAGTTATGACTATTTGAACAATTGT-ATATTTCAAATCGTTATGACCTTT
* ** *
113491 TTTTTTTTATAAAACAATTGTTTTTTATCATACAAACT
320 TTTTTATTATAAAACAATTGTTTCAT-TCATACAAGCT
* * * * *
113529 TATTTGAAATAAAATAATACTAATTTGTTAGTATTTCACAAATTAATATGTAAAAGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTCA-AAATTAATAAGTAAGAGATTT-AAAA
* * * * * * * *
113594 ATAAGTCAATTTATCAAACCAATTCAAATAATTATGACTATTTGAATAATTATCAATTGCAAATC
64 ATAAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATT
* * * * * *
113659 GTTA-AGATC-TTTGTTTTGTCATAAAATAATTATTTCTAATCTTAAAAGCTTATTCG-GTTAAA
129 GTTATA-ACCTTTTGTTTTGTCATAAAATAATT-TTTTTAATCATACAAGCTTATTTGAGAT-AA
* * * *** *
113721 AATAATACTAATTTAATAATATTCTAAAAATTAAT-A--AATGTATTT--GTCA-AACTA-G-TT
191 AATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAAG-ATTTAAAAAATAAATATGTTT
* * * *
113778 --CAAATAA-TTAAAACTA-TTA-GA--A--T----AATTATCTCTTTCAAATCGTTATGACATT
255 ACCAAATAAGTTAAAA-TAGTTATGACTATTTGAACAATTGTATATTTCAAATCGTTATGACCTT
* * * * *
113830 TTGTTTAGTCATAAAATATTTGTTTCATATCTTACAAGCT
319 TTTTTTA-TTATAAAACAATTGTTTCAT-TCATACAAGCT
* * * * * * * *
113870 TATTCAAAAGAAAATAATCCAAATTTATTAACA-TTCAAAAAATTAATAAGCAAAATATTTGAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTC--AAAATTAATAAGTAAGAGATTT---A
* * ** * *
113934 AAAATAAATTTATTTATCGAA-CAAGTTCAAATAGTTATGACTATTTAATTAATTATTTATTTAA
61 AAAATAAATCTATTTATCGAACCAA-TTCAAATAATTATGACTATTTAAACAATTATCTATTTCA
* * * * * * *** *
113998 AATCGTTATAACCTTTTGTTATGACATAAAATAATTATTTTAGTTCATAAAAGCTTATCCAAAAT
125 AATTGTTATAACCTTTTGTTTTGTCATAAAATAATTTTTTTA-ATCATACAAGCTTATTTGAGAT
* * *
114063 AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAGGTTTGAAAAAATAAAGT-TG
189 AAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAAGATTT-AAAAAATAAA-TATG
* * * * * * * * * *
114127 CTTATCGAATAAATTCAAATAGTTATGACTATTTGAATAATTATCTATTT-AAATTCATTATGAT
252 TTTACCAAATAAGTTAAAATAGTTATGACTATTTGAACAATTGTATATTTCAAA-TCGTTATGAC
* *
114191 CTTTTCTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCT
316 CTTTT-TTTTATTATAAAACAATTGTTTC-ATTCATACAAGCT
* * * * * *
114234 TATTCAAAATAAAATAATACTAATTTAATATTTTTTCAAAAATTAATAGGTAAGTGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTC-AAAATTAATAAGTAAGAGATTTAAAAA
* * * ** * * * *
114299 GTGAATCTGTTTACCGAATTAATTCAAATAATTAT-AGCCATTTCAATAATTATCCATTTCAAAT
65 -TAAATCTATTTATCGAACCAATTCAAATAATTATGA-CTATTTAAACAATTATCTATTTCAAAT
* ** * * *
114363 TATTATTTCCTTTTG-TTTGATCATATAAA-AATTGTTTTTTATCATATAAGTTTATTTG-GAAT
128 TGTTATAACCTTTTGTTTTG-TCATA-AAATAATT-TTTTTAATCATACAAGCTTATTTGAG-AT
* * * *
114425 AAAATAATACTAATTTATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTAT
189 AAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGT
* * *
114490 TTACCAAACTAA-TTTAAATAGTTATGACTATTTGAACAATTGTATAATTT-AAATCATTATAAC
253 TTACCAAA-TAAGTTAAAATAGTTATGACTATTTGAACAATTGTAT-ATTTCAAATCGTTATGAC
* * * * * ** *
114553 ATTTTGTTCTGTTATAAAATAATTATTTTTGTTCATACTAGCT
316 CTTTT-TTTTATTATAAAACAATT-GTTTCATTCATACAAGCT
* * * * *
114596 TATTTGAAATAAAATAATACTAATGTAATAATATTATGAAAATTAATAACTAAGAGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATT-TCAAAATTAATAAGTAAGAGATTT-AAAA
* * * * * * * * * * *
114661 ATAAATTTGTTTACCGAACCAGTTCAAATAGTTAAGACTATATGAATAATTATCGATTTCAAATC
64 ATAAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATT
* * * * * * * * * *
114726 ATTATGACCTTTTGTTTTATCATAAAGTAATTTTTTCAATTCTTATC-ACCTTACTCGAAATAAA
129 GTTATAACCTTTTGTTTTGTCATAAAATAATTTTTTTAA-TCATA-CAAGCTTATTTGAGATAAA
* * * ** * *
114790 ATAA-AATAAATTTATTGATATTTCAAAAATTAATAAGTAAGAGATTTATTAAATAATTTTGTTT
192 ATAATACT-AATTTATTAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTT
* * * * * * *
114854 ACCTAACT-AGTGT-AAATAATTATGACTATTT-AAGTAATTATCTATTTCAAATCATTATAACC
255 ACC-AAATAAGT-TAAAATAGTTATGACTATTTGAA-CAATTGTATATTTCAAATCGTTATGACC
* * ** * *
114916 TTTTGTTTTGTCATAAAACAAATAT-TTTTGTTCATATAAGTT
317 TTTT-TTTTATTATAAAAC-AAT-TGTTTCATTCATACAAGCT
* * * *
114958 TATTTGAAATAAAATAATACGAATCTATTAATATTTCAAAAATTAATAA--AAGA-TTTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTATTAATATTTC-AAAATTAATAAGTAAGAGATTT-AAAA
* * * * * * * * * *
115020 ATAAATTTGTTTATCAAACCAGTTCAAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATC
64 ATAAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATT
* * * * * * * * * * *
115085 ATTATGACTTTTTG-TTTGTTATAAAACAATAGTTTCTATTCTTACAAGCTTA-TTCAAATTAAA
129 GTTATAACCTTTTGTTTTGTCATAAAATAAT-TTTTTTAATCATACAAGCTTATTTGAGA-TAAA
* * * * * *
115148 ATAATTCTAATTTATTAATATTTTGACAATTAATAACTAAAACATTTTAAAAATAAATATGTTTA
192 ATAATACTAATTTATTAATATTTTAAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTA
*
115213 TCAAA
256 CCAAA
115218 CTAGATCAAA
Statistics
Matches: 1903, Mismatches: 410, Indels: 197
0.76 0.16 0.08
Matches are distributed among these distances:
340 32 0.02
341 68 0.04
342 4 0.00
343 65 0.03
344 70 0.04
345 2 0.00
346 4 0.00
347 3 0.00
348 1 0.00
349 15 0.01
350 4 0.00
351 4 0.00
352 3 0.00
353 4 0.00
354 9 0.00
355 8 0.00
356 8 0.00
357 7 0.00
358 81 0.04
359 229 0.12
360 175 0.09
361 308 0.16
362 551 0.29
363 129 0.07
364 111 0.06
365 8 0.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (356 bp):
TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAGTAAGAGATTTAAAAAT
AAATCTATTTATCGAACCAATTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATTGT
TATAACCTTTTGTTTTGTCATAAAATAATTTTTTTAATCATACAAGCTTATTTGAGATAAAATAA
TACTAATTTATTAATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCAAA
TAAGTTAAAATAGTTATGACTATTTGAACAATTGTATATTTCAAATCGTTATGACCTTTTTTTTA
TTATAAAACAATTGTTTCATTCATACAAGCT
Found at i:113886 original size:161 final size:160
Alignment explanation
Indices: 113602--113918 Score: 379
Period size: 161 Copynumber: 2.0 Consensus size: 160
113592 AAATAAGTCA
** * *
113602 ATTTATCAAACCAATTCAAATAATTATGACTATTTGAATAATTATCAATTGCAAATCGTTAAGAT
1 ATTTATCAAACCAATTCAAATAATTAAAACTATTAGAATAATTATCAATTGCAAATCGTTAACAT
* *** *
113667 CTTTGTTTTGTCATAAAATAATTATTTCTAATCTTAAAAGCTTATTCGGTTAAAAATAATACTAA
66 CTTTGTTTAGTCATAAAATAATTATTTCTAATCTTAAAAGCTTATTCGAAAAAAAATAATACAAA
* *
113732 TTTAATAATATTCTAAAAATTAATAAATGT
131 TTTAATAACATTCAAAAAATTAATAAATGT
* * * ** *
113762 ATTTGTCAAACTAGTTCAAATAATTAAAACTATTAGAATAATTATCTCTTTCAAATCGTTATGAC
1 ATTTATCAAACCAATTCAAATAATTAAAACTATTAGAATAATTATCAATTGCAAATCGTTA--AC
* * * *
113827 AT-TTTGTTTAGTCATAAAATATTTGTTTC-ATATCTTACAAGCTTATTC-AAAAGAAAATAATC
64 ATCTTTGTTTAGTCATAAAATAATTATTTCTA-ATCTTAAAAGCTTATTCGAAAA-AAAATAATA
*
113889 CAAATTTATTAACATTCAAAAAATTAATAA
127 CAAATTTAATAACATTCAAAAAATTAATAA
113919 GCAAAATATT
Statistics
Matches: 131, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
160 54 0.41
161 74 0.56
162 3 0.02
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.40
Consensus pattern (160 bp):
ATTTATCAAACCAATTCAAATAATTAAAACTATTAGAATAATTATCAATTGCAAATCGTTAACAT
CTTTGTTTAGTCATAAAATAATTATTTCTAATCTTAAAAGCTTATTCGAAAAAAAATAATACAAA
TTTAATAACATTCAAAAAATTAATAAATGT
Found at i:114209 original size:181 final size:179
Alignment explanation
Indices: 113773--115212 Score: 1207
Period size: 181 Copynumber: 8.0 Consensus size: 179
113763 TTTGTCAAAC
* ** * * * * *
113773 TAGTTCAAATAATTAAAACTATTAGAATAATTATCTCTTTCAAATCGTTATGACATTTTGTTTAG
1 TAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTG
* * * * * * * *
113838 TCATAAAATATTTGTTTCA-TATCTTACAAGCTTATTCAAAAGAAAATAATCCAAATTTATTAAC
66 TCATAAAATAATTATTTTAGT-TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAT
* * *
113902 A-TTCAAAAAATTAATAAGCAAAATATTTGAAAAAAATAAATTTATTTATCGAA
130 ATTTC-AAAAATTAATAAGC-AAAGATTT--AAAAAATAAATTTGTTTACCGAA
* * * * * *
113955 CAAGTTCAAATAGTTATGACTATTT-AATTAATTATTTATTTAAAATCGTTATAACCTTTTGTTA
1 -TAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * *
114019 TGACATAAAATAATTATTTTAGTTCATAAAAGCTTATCCAAAATAAAATAATACTAATTTATTAA
64 TGTCATAAAATAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAA
* * * *
114084 TATTTCAAAAATTAATAAGCAAAGGTTTGAAAAAATAAAGTTGCTTATCGAA
129 TATTTCAAAAATTAATAAGCAAAGATTT-AAAAAATAAATTTGTTTACCGAA
* * *
114136 TAAATTCAAATAGTTATGACTATTTGAATAATTATCTATTT-AAATTCATTATGATCTTTTCTTT
1 T-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA-TCATTATGACCTTTTGTTT
* * * * * *
114200 TGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAATAT
64 TGTCATAAAATAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAA
* * * * * * *
114265 TTTTTCAAAAATTAATAGGTAAGTGATTTAAAAAGTGAATCTGTTTACCGAA
129 TATTTCAAAAATTAATAAGCAA-AGATTTAAAAAATAAATTTGTTTACCGAA
* * * * * * **
114317 TTAATTCAAATAATTAT-AGCCATTTCAATAATTATCCATTTCAAATTATTATTTCCTTTTG-TT
1 -TAGTTCAAATAGTTATGA-CTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * ***
114380 TGATCATATAAA-AATTGTTTT-TTATCATATAAGTTTATTTGGAATAAAATAATACTAATTTAT
64 TG-TCATA-AAATAATTATTTTAGT-TCATACAAGCTTATTCAAAATAAAATAATACTAATTTAT
* * * * *
114443 TAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAA
126 TAATATTTCAAAAATTAATAAGCAA-AGATTTAAAAAATAAATTTGTTTACCGAA
* * * * * * * *
114498 CTAATTTAAATAGTTATGACTATTTGAACAATTGTATAATTT-AAATCATTATAACATTTTGTTC
1 -TAGTTCAAATAGTTATGACTATTTGAATAATTATCT-ATTTCAAATCATTATGACCTTTTGTTT
* * * ** * *
114562 TGTTATAAAATAATTATTTTTGTTCATACTAGCTTATTTGAAATAAAATAATACTAATGTAATAA
64 TGTCATAAAATAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAA
*
114627 TATTAT-GAAAATTAATAA-CTAAGAGATTTAAAAAATAAATTTGTTTACCGAA
129 TATT-TCAAAAATTAATAAGC-AA-AGATTTAAAAAATAAATTTGTTTACCGAA
* * * *
114679 CCAGTTCAAATAGTTAAGACTATATGAATAATTATCGATTTCAAATCATTATGACCTTTTGTTTT
1 -TAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * * * * * *
114744 ATCATAAAGTAATT-TTTTCAATTCTTATC-ACCTTACTCGAAATAAAATAA-AATAAATTTATT
65 GTCATAAAATAATTATTTT-AGTTCATA-CAAGCTTATTCAAAATAAAATAATACT-AATTTATT
* * ** * *
114806 GATATTTCAAAAATTAATAAGTAAGAGATTTATTAAATAATTTTGTTTACCTAA
127 AATATTTCAAAAATTAATAAGCAA-AGATTTAAAAAATAAATTTGTTTACCGAA
* *
114860 CTAGTGT-AAATAATTATGACTATTT-AAGTAATTATCTATTTCAAATCATTATAACCTTTTGTT
1 -TAGT-TCAAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCATTATGACCTTTTGTT
* * * * * ** * *
114923 TTGTCATAAAACAAATATTTTTGTTCATATAAGTTTATTTGAAATAAAATAATACGAATCTATTA
63 TTGTCATAAAATAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTA
* *
114988 ATATTTCAAAAATTAAT-A--AAAGATTTTAAAAAATAAATTTGTTTATCAAA
128 ATATTTCAAAAATTAATAAGCAAAGA-TTTAAAAAATAAATTTGTTTACCGAA
* * ** * *
115038 CCAGTTCAAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTG-TTT
1 -TAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * * *
115102 GTTATAAAACAA-TAGTTTCTA-TTCTTACAAGCTTATTCAAATTAAAATAATTCTAATTTATTA
65 GTCATAAAATAATTA-TTT-TAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTA
** * * * *
115165 ATATTTTGACAATTAATAA-CTAAAACATTTTAAAAATAAATATGTTTA
128 ATATTTCAAAAATTAATAAGC--AAAGATTTAAAAAATAAATTTGTTTA
115213 TCAAACTAGA
Statistics
Matches: 1023, Mismatches: 194, Indels: 83
0.79 0.15 0.06
Matches are distributed among these distances:
176 2 0.00
177 68 0.07
178 74 0.07
179 1 0.00
180 45 0.04
181 675 0.66
182 38 0.04
183 116 0.11
184 4 0.00
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.41
Consensus pattern (179 bp):
TAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTG
TCATAAAATAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATA
TTTCAAAAATTAATAAGCAAAGATTTAAAAAATAAATTTGTTTACCGAA
Found at i:114357 original size:16 final size:17
Alignment explanation
Indices: 114325--114360 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
114315 AATTAATTCA
114325 AATAATTATAGCCATTTC
1 AATAATTATA-CCATTTC
114343 AATAATTAT-CCATTTC
1 AATAATTATACCATTTC
114359 AA
1 AA
114361 ATTATTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAATTATACCATTTC
Found at i:114816 original size:543 final size:537
Alignment explanation
Indices: 113880--115212 Score: 1478
Period size: 543 Copynumber: 2.5 Consensus size: 537
113870 TATTCAAAAG
* * *
113880 AAAATAATCCAAATTTATTAA-CATTCAAAAAATTAATAAGCAAAATATTTGAAAAAAATAAATT
1 AAAATAATACAAATTTATTAATCTTTC-AAAAATTAATAAG-AAGA-ATTT--AAAAAATAAATT
* * *
113944 TATTTATCGAACAAGTTCAAATAGTTATGACTATTT-AATTAATTATTTATTTAAAATCGTTATA
61 TATTTATCAAACAA-TTCAAATAGTTATGACTATTTGAA-CAATTATTTATTTAAAATCATTATA
* ** * * **
114008 ACCTTTTGTTATGACATAAAATAATTATTTTAGTTCATAAAAGCTTATCCAAAATAAAATAATAC
124 ACATTTTGTT-TGTTATAAAATAATTATTTTTGTTCATACAAGCTTATTTAAAATAAAATAATAC
* * * * * *
114073 TAATTTATTAATATTTCAAAAATTAATAAGC-AAAGGTTTGAAAAAATAAAGTTGCTTATCGAAT
188 TAATTTATTAATATTT-GAAAATTAATAA-CTAAAGATTT-AAAAAATAAATTTGTTTACCGAAC
* * * * *
114137 AAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTAAATTCATTATGATCTTTTCTTTTG
250 AAATTCAAATAGTTAAGACTATATGAATAATTATCGATTTAAATTCATTATGACCTTTTCTTTTA
* * * *
114202 TCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAATATTT
315 TCATAAAACAATTGTTTCAATTCATACAACCTTACTCAAAATAAAATAATAATAATTTAATATTA
* * *
114267 TTTCAAAAATTAATAGGTAAGTGATTTA-AAAAGTGAA-TCTGTTTACCGAATTAAT-TCAAATA
380 TTTCAAAAATTAATAAGTAAGAGATTTATAAAA-T-AATTCTGTTTACCGAACTAATGT-AAATA
* ** *
114329 ATTAT-AGCCATTTCAA-TAATTATCCATTTCAAATTATTATTTCCTTTTG-TTTGATCATATAA
442 ATTATGA-CCATTT-AAGTAATTATCCATTTCAAATCATTATAACCTTTTGTTTTG-TCATAAAA
* *
114391 -AAAT-TGTTTTTTATCATATAAGTTTATTTGGAAT
504 CAAATAT-TTTTGT-TCATATAAGTTTATTTGAAAT
* *
114425 AAAATAATACTAATTTATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTAT
1 AAAATAATACAAATTTATTAATCTTTCAAAAATTAATAAG-AAGA-ATTTAAAAAATAAATTTAT
* * * *
114490 TTACCAAACTAATTTAAATAGTTATGACTATTTGAACAATTGTATAATTT-AAATCATTATAACA
64 TTATCAAAC-AATTCAAATAGTTATGACTATTTGAACAATTAT-TTATTTAAAATCATTATAACA
* *
114554 TTTTGTTCTGTTATAAAATAATTATTTTTGTTCATACTAGCTTATTTGAAATAAAATAATACTAA
127 TTTTGTT-TGTTATAAAATAATTATTTTTGTTCATACAAGCTTATTTAAAATAAAATAATACTAA
* * * *
114619 TGTAATAATATTATGAAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGT
191 TTTATTAATATT-TGAAAATTAATAACTAA-AGATTTAAAAAATAAATTTGTTTACCGAACAAAT
*
114684 TCAAATAGTTAAGACTATATGAATAATTATCGATTTCAAA-TCATTATGACCTTTTGTTTTATCA
254 TCAAATAGTTAAGACTATATGAATAATTATCGATTT-AAATTCATTATGACCTTTTCTTTTATCA
** * * * *
114748 TAAAGTAATTTTTTCAATTCTTATC-ACCTTACTCGAAATAAAATAA-AATAAATTTATTGA-TA
318 TAAAACAATTGTTTCAATTCATA-CAACCTTACTCAAAATAAAATAATAAT-AATTTAAT-ATTA
* * * *
114810 TTTCAAAAATTAATAAGTAAGAGATTTATTAAATAATTTTGTTTACCTAACTAGTGTAAATAATT
380 TTTCAAAAATTAATAAGTAAGAGATTTATAAAATAATTCTGTTTACCGAACTAATGTAAATAATT
* *
114875 ATGACTATTTAAGTAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAATA
445 ATGACCATTTAAGTAATTATCCATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAATA
114940 TTTTTGTTCATATAAGTTTATTTGAAAT
510 TTTTTGTTCATATAAGTTTATTTGAAAT
* * * * *
114968 AAAATAATACGAATCTATTAATATTTCAAAAATTAATAA-AAGATTTTAAAAAATAAATTTGTTT
1 AAAATAATACAAATTTATTAATCTTTCAAAAATTAATAAGAAGAATTTAAAAAATAAATTTATTT
* * * * * *
115032 ATCAAACCAGTTCAAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTT
66 ATCAAA-CAATTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATAACATTT
* * * * * * *
115097 TGTTTGTTATAAAACAA-TAGTTTCTATTCTTACAAGCTTATTCAAATTAAAATAATTCTAATTT
130 TGTTTGTTATAAAATAATTA-TTTTTGTTCATACAAGCTTATTTAAAATAAAATAATACTAATTT
* * * *
115161 ATTAATATTTTGACAATTAATAACTAAAACATTTTAAAAATAAATATGTTTA
194 ATTAATA-TTTGAAAATTAATAACT-AAAGATTTAAAAAATAAATTTGTTTA
115213 TCAAACTAGA
Statistics
Matches: 669, Mismatches: 95, Indels: 54
0.82 0.12 0.07
Matches are distributed among these distances:
538 2 0.00
539 93 0.14
540 74 0.11
541 5 0.01
542 7 0.01
543 406 0.61
544 38 0.06
545 40 0.06
546 4 0.01
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (537 bp):
AAAATAATACAAATTTATTAATCTTTCAAAAATTAATAAGAAGAATTTAAAAAATAAATTTATTT
ATCAAACAATTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATAACATTTT
GTTTGTTATAAAATAATTATTTTTGTTCATACAAGCTTATTTAAAATAAAATAATACTAATTTAT
TAATATTTGAAAATTAATAACTAAAGATTTAAAAAATAAATTTGTTTACCGAACAAATTCAAATA
GTTAAGACTATATGAATAATTATCGATTTAAATTCATTATGACCTTTTCTTTTATCATAAAACAA
TTGTTTCAATTCATACAACCTTACTCAAAATAAAATAATAATAATTTAATATTATTTCAAAAATT
AATAAGTAAGAGATTTATAAAATAATTCTGTTTACCGAACTAATGTAAATAATTATGACCATTTA
AGTAATTATCCATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAATATTTTTGTTCAT
ATAAGTTTATTTGAAAT
Found at i:115316 original size:10 final size:10
Alignment explanation
Indices: 115280--115317 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
115270 TTTATTATTA
*
115280 TTTTTTCTTC
1 TTTTTTTTTC
*
115290 TTTTTCTTTC
1 TTTTTTTTTC
115300 TTTTTTTTTC
1 TTTTTTTTTC
115310 TTTTTTTT
1 TTTTTTTT
115318 ATAGCTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:115325 original size:23 final size:23
Alignment explanation
Indices: 115280--115326 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
115270 TTTATTATTA
* **
115280 TTTTTTCTTCTTTTTCTTTCTTT
1 TTTTTTCTTCTTTTTATAGCTTT
*
115303 TTTTTTCTTTTTTTTATAGCTTT
1 TTTTTTCTTCTTTTTATAGCTTT
115326 T
1 T
115327 CTATCGACCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (23 bp):
TTTTTTCTTCTTTTTATAGCTTT
Found at i:121802 original size:20 final size:21
Alignment explanation
Indices: 121764--121802 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
121754 ATGTAGACAC
121764 CCAATTGGGTCCAGGCCCAGA
1 CCAATTGGGTCCAGGCCCAGA
*
121785 CCAATTGGG-CCTGGCCCA
1 CCAATTGGGTCCAGGCCCA
121803 AATGGGTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (21 bp):
CCAATTGGGTCCAGGCCCAGA
Found at i:121856 original size:10 final size:9
Alignment explanation
Indices: 121843--121874 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
121833 TTGTTATTTT
121843 TTTTTCTTTC
1 TTTTTC-TTC
121853 TTTTTCTTC
1 TTTTTCTTC
121862 TTTTTCTTC
1 TTTTTCTTC
121871 TTTT
1 TTTT
121875 GTATTTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:122065 original size:5 final size:4
Alignment explanation
Indices: 121879--122072 Score: 82
Period size: 4 Copynumber: 47.8 Consensus size: 4
121869 TCTTTTGTAT
* * *
121879 TTTA TGTA TTT- TATTA TTTA TTTA -TTA -TTA -TTA -TTA TGTA TTAA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * *
121923 TATA TGTA TATC TTTA TTTA TTTA TTTA TTTA TTT- TGTTA -ATA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA
* * *
121970 TATGTA TTTTA TTTA TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA
1 T-T-TA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA
* * * *
122019 TTTA -TTA TTTTT TTTC TTGTA TTTT TTTA TTTT TTTA TTTA TCTTA TTGTA
1 TTTA TTTA -TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA T-TTA TT-TA
122070 TTT
1 TTT
122073 CTAATTATCT
Statistics
Matches: 146, Mismatches: 27, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
3 22 0.15
4 93 0.64
5 24 0.16
6 6 0.04
7 1 0.01
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:122072 original size:22 final size:21
Alignment explanation
Indices: 121885--122057 Score: 63
Period size: 22 Copynumber: 8.0 Consensus size: 21
121875 GTATTTTATG
*
121885 TATTTTATTATTTATTTATTA
1 TATTTTTTTATTTATTTATTA
* * *
121906 TTATTATTATGTATTAATATATGTA
1 -TATT-TT-TTTATTTATTTAT-TA
121931 TATCTTTATTTATTTATTTATT-
1 TAT-TTT-TTTATTTATTTATTA
* * *
121953 TATTTTGTTA-ATATTTATATG
1 TATTTTTTTATTTATTTAT-TA
* *
121974 TATTTTATTTATATAGTTA-TA
1 TATTTT-TTTATTTATTTATTA
*
121995 TATTTATTATTATATTA-TAATT-
1 TATTT-TT-TTAT-TTATTTATTA
* *
122017 TATTTATTATT-TTT-TTTCTTG
1 TATTT-TT-TTATTTATTTATTA
*
122038 TATTTTTTTATTTTTTTATT
1 TATTTTTTTATTTATTTATT
122058 TATCTTATTG
Statistics
Matches: 118, Mismatches: 17, Indels: 33
0.70 0.10 0.20
Matches are distributed among these distances:
19 9 0.08
20 14 0.12
21 27 0.23
22 28 0.24
23 12 0.10
24 25 0.21
25 3 0.03
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.68
Consensus pattern (21 bp):
TATTTTTTTATTTATTTATTA
Found at i:123004 original size:27 final size:28
Alignment explanation
Indices: 122967--123029 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
122957 CCGCTCCAGG
*
122967 TTTTTTT-TTAGAATT-TATTTATTT-AT
1 TTTTTTTATTAG-ATTAGATTTATTTAAT
122993 TTTTTTTATTAGATTAGATTTATTTAAT
1 TTTTTTTATTAGATTAGATTTATTTAAT
*
123021 ATTTTTTAT
1 TTTTTTTAT
123030 CTTTATCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.31
27 12 0.38
28 10 0.31
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (28 bp):
TTTTTTTATTAGATTAGATTTATTTAAT
Found at i:123089 original size:22 final size:20
Alignment explanation
Indices: 123024--123105 Score: 62
Period size: 22 Copynumber: 4.0 Consensus size: 20
123014 ATTTAATATT
123024 TTTTATCTTTATCTTATTTTCA
1 TTTTAT-TTTAT-TTATTTTCA
* *
123046 TTTTTGTTTTACTT-TTTT--
1 -TTTTATTTTATTTATTTTCA
123064 TTTTATCTTTATTTATTTTCA
1 TTTTAT-TTTATTTATTTTCA
*
123085 CTTTTATTTTGTTCTATTTTC
1 -TTTTATTTTATT-TATTTTC
123106 TTTAAATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
17 5 0.10
18 6 0.12
19 4 0.08
20 4 0.08
21 7 0.15
22 17 0.35
23 5 0.10
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTATTTTATTTATTTTCA
Found at i:123181 original size:58 final size:58
Alignment explanation
Indices: 123109--123749 Score: 889
Period size: 58 Copynumber: 10.9 Consensus size: 58
123099 TATTTTCTTT
123109 AAAT-AATTTTCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTTTCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAA
** *
123166 AAATAAATTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
123224 AAATCAAAGTTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAAT-AAATTTTC---AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
123286 AAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
** * * *
123344 AAATAAATTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAATATCAATTTTCCTTGA
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
123402 AAATCAAAGTTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAAT-AAA-TTTTC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
123464 AAATCAAAATTTCCAAAGAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT--AAATTTTCAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
123524 AAGTAAATTTTCAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
123582 AAATCAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGGAAGTATCAATTTTCCTTAA
1 AAAT--AAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
123642 AAATAAATTTTCAAAAAAA-AGTTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTGAA
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AA
* * *
123699 AATTAAAGTTTCAAAAGAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTT
1 AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
123750 TCCTGCACAA
Statistics
Matches: 522, Mismatches: 44, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
56 24 0.05
57 33 0.06
58 242 0.46
59 16 0.03
60 102 0.20
61 7 0.01
62 95 0.18
63 3 0.01
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (58 bp):
AAATAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:123251 original size:120 final size:116
Alignment explanation
Indices: 123116--123749 Score: 898
Period size: 120 Copynumber: 5.4 Consensus size: 116
123106 TTTAAATAAT
*
123116 TTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TTTCAAAAAAATATTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
*
123181 AAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAATCAAAG
65 AAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAAG
*
123233 TTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 TTTC---AAAAAAATATTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
123298 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAT
62 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
** * *
123352 TTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTTCA
1 TTTCAAAAAAATATTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC-
* *
123417 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAA
62 -AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
* *
123473 TTTCCAAAGAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAGTAAATTTTCAA
1 TTT-CAAAAAAATATTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
* *
123538 AAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAAT
64 AAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAG
* *
123592 TTTCAAAAAAATATTTTTGAGGAAAAGTTGGAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TTTCAAAAAAATATTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
* *
123657 AAAA-AGTTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAG
65 AAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
* *
123707 TTTCAAAAGAATATTTTTGGGAAAAGTTGAAAGTATCAATTTT
1 TTTCAAAAAAATATTTTTGGAAAAAGTTGAAAGTATCAATTTT
123750 TCCTGCACAA
Statistics
Matches: 470, Mismatches: 33, Indels: 31
0.88 0.06 0.06
Matches are distributed among these distances:
114 23 0.05
115 21 0.04
116 76 0.16
117 16 0.03
118 114 0.24
119 14 0.03
120 152 0.32
121 10 0.02
122 43 0.09
123 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (116 bp):
TTTCAAAAAAATATTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
Found at i:123412 original size:178 final size:177
Alignment explanation
Indices: 123109--123749 Score: 976
Period size: 178 Copynumber: 3.6 Consensus size: 177
123099 TATTTTCTTT
123109 AAAT-AATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
1 AAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
*
123173 TTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAATCAAAGTTTC
66 TTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAAGTTTC
* *
123237 AAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
130 -AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
123286 AAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
1 AAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
*
123351 TTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAATATCAATTTTCCTTGAAAATCAAAGTTTTC
66 TTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG-TTTC
*
123416 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
130 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
123464 AAATCAAAATTTCCAAAGAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAGTA
1 AAAT--AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
* *
123529 AATTTTCAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
64 AATTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAGTT
*
123594 TC--AAAAAAATATTTTTGAGGAAAAGTTGGAAGTATCAATTTTCCTTAA
128 TCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
123642 AAATAAATTTTCAAAAAAA-AGTTTT-GAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATTA
1 AAATAAATTTTCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATA
* * *
123704 AAGTTTCAAAAGAA-TATTTTTG-GGAAAAGTTGAAAGTATCAATTTT
64 AATTTTCAAAA-AAGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
123750 TCCTGCACAA
Statistics
Matches: 431, Mismatches: 24, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
174 49 0.11
175 29 0.07
176 15 0.03
177 4 0.01
178 212 0.49
179 5 0.01
180 114 0.26
181 3 0.01
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (177 bp):
AAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
TTTTCAAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCA
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:123795 original size:6 final size:6
Alignment explanation
Indices: 123781--123814 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
123771 TTTTCCTTCC
*
123781 TTTTTA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
123815 TCTTTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.74
Consensus pattern (6 bp):
TTTTGA
Found at i:134215 original size:15 final size:15
Alignment explanation
Indices: 134180--134221 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
134170 CTATGCATGA
*
134180 AAAAAAAT-AAAAGT
1 AAAAAAATAAAAAAT
134194 -AAAAAATAAAAAAT
1 AAAAAAATAAAAAAT
134208 AAAAAAATGAAAAA
1 AAAAAAAT-AAAAA
134222 GTGATTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.29
14 5 0.21
15 7 0.29
16 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.05, T:0.12
Consensus pattern (15 bp):
AAAAAAATAAAAAAT
Found at i:134221 original size:7 final size:7
Alignment explanation
Indices: 134181--134213 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
134171 TATGCATGAA
134181 AAAAAAT
1 AAAAAAT
*
134188 -AAAAGT
1 AAAAAAT
134194 AAAAAAT
1 AAAAAAT
134201 AAAAAAT
1 AAAAAAT
134208 AAAAAA
1 AAAAAA
134214 ATGAAAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:135307 original size:41 final size:41
Alignment explanation
Indices: 135248--135620 Score: 482
Period size: 41 Copynumber: 9.0 Consensus size: 41
135238 GATTATCAAA
*
135248 GAGCAATTTACTTCCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* * * *
135289 GAGCAATTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAAAA
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
*
135330 GAGCAATTTATTTTCCAAAGTTTCGT--TGCCTCTGTTTAGAG
1 GAGCAATTTACTTTCCAAAG--TCGTGGTGCCTCTGTTTAGAG
* * *
135371 GAACAATTTA-TTTCCCAAAGTCGTGGTACCTCTGTTTAAAG
1 GAGCAATTTACTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAG
* * *
135412 GAGCAATTTACTTCCCAAAGTCATGGTGCCTTTGTTTAGAG
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
135453 GAGCAATTTACTTTCCAAAGTCATGGTGCCTTTGTTTAGAG
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
135494 AAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
135535 GAGTAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* * **
135576 GAGCAATTTATGTTTCTCAAAGTCGTTGAACCTCTGTTTAGAG
1 GAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAGAG
135619 GA
1 GA
135621 ACTTTGGTAA
Statistics
Matches: 294, Mismatches: 30, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.01
40 3 0.01
41 254 0.86
42 6 0.02
43 27 0.09
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (41 bp):
GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:135645 original size:8 final size:8
Alignment explanation
Indices: 135629--135684 Score: 60
Period size: 9 Copynumber: 6.5 Consensus size: 8
135619 GAACTTTGGT
135629 AAAAA-AA
1 AAAAACAA
135636 AAAAACAA
1 AAAAACAA
135644 AAAAACAAAA
1 AAAAAC--AA
135654 AAAACACAA
1 AAAA-ACAA
135663 AAAAACAAA
1 AAAAAC-AA
135672 AAATAACAA
1 AAA-AACAA
135681 AAAA
1 AAAA
135685 TAACAATGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
7 5 0.12
8 11 0.26
9 16 0.37
10 9 0.21
11 2 0.05
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.02
Consensus pattern (8 bp):
AAAAACAA
Found at i:135647 original size:10 final size:10
Alignment explanation
Indices: 135629--135690 Score: 72
Period size: 10 Copynumber: 6.2 Consensus size: 10
135619 GAACTTTGGT
*
135629 AAAAAAAAAA
1 AAAAAAAAAC
135639 AACAAAAAAAC
1 AA-AAAAAAAC
135650 -AAAAAAAAC
1 AAAAAAAAAC
*
135659 ACAAAAAAAC
1 AAAAAAAAAC
*
135669 AAAAAATAAC
1 AAAAAAAAAC
*
135679 AAAAAATAAC
1 AAAAAAAAAC
135689 AA
1 AA
135691 TGTTGAGTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.17
10 31 0.67
11 7 0.15
ACGTcount: A:0.85, C:0.11, G:0.00, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:135655 original size:18 final size:18
Alignment explanation
Indices: 135632--135684 Score: 88
Period size: 19 Copynumber: 2.9 Consensus size: 18
135622 CTTTGGTAAA
135632 AAAAAAAAACAAAAAAAC
1 AAAAAAAAACAAAAAAAC
135650 AAAAAAAACACAAAAAAAC
1 AAAAAAAA-ACAAAAAAAC
*
135669 AAAAAATAACAAAAAA
1 AAAAAAAAACAAAAAA
135685 TAACAATGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
18 16 0.48
19 17 0.52
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAC
Found at i:135679 original size:20 final size:19
Alignment explanation
Indices: 135631--135690 Score: 86
Period size: 19 Copynumber: 3.1 Consensus size: 19
135621 ACTTTGGTAA
*
135631 AAAAAAAAAACAAAAAAAC
1 AAAAAAAACACAAAAAAAC
135650 AAAAAAAACACAAAAAAAC
1 AAAAAAAACACAAAAAAAC
135669 AAAAAATAACA-AAAAATAAC
1 AAAAAA-AACACAAAAA-AAC
135689 AA
1 AA
135691 TGTTGAGTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 29 0.76
20 9 0.24
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.03
Consensus pattern (19 bp):
AAAAAAAACACAAAAAAAC
Found at i:135905 original size:3 final size:3
Alignment explanation
Indices: 135879--135950 Score: 94
Period size: 3 Copynumber: 23.7 Consensus size: 3
135869 TCTTCTTTTG
*
135879 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TTT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
135924 TAT TAT TAT TAT TAT TAT TAT GTAT TA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TA
135951 ATATATGTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
2 4 0.06
3 49 0.79
4 9 0.15
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:137016 original size:4 final size:4
Alignment explanation
Indices: 137009--137043 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
136999 TGGAATTTTT
*
137009 TTTA TTTA TTTGT TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TT
137044 AGATTAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.89
5 3 0.11
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:137019 original size:13 final size:13
Alignment explanation
Indices: 137003--137043 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
136993 TTTTTTTGGA
137003 ATTTTTTTTATTT
1 ATTTTTTTTATTT
*
137016 ATTTGTTTTATTT
1 ATTTTTTTTATTT
*
137029 A-TTTATTTATTT
1 ATTTTTTTTATTT
137041 ATT
1 ATT
137044 AGATTAGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (13 bp):
ATTTTTTTTATTT
Found at i:137024 original size:17 final size:17
Alignment explanation
Indices: 137004--137036 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
136994 TTTTTTGGAA
*
137004 TTTTTTTTATTTATTTG
1 TTTTATTTATTTATTTG
137021 TTTTATTTATTTATTT
1 TTTTATTTATTTATTT
137037 ATTTATTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTATTTATTTATTTG
Found at i:137103 original size:22 final size:22
Alignment explanation
Indices: 137065--137106 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
137055 ATTTAATATT
137065 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
*
137087 TTTTAT-TTTGTTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
137107 TTTAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:137182 original size:58 final size:57
Alignment explanation
Indices: 137110--137630 Score: 706
Period size: 58 Copynumber: 8.9 Consensus size: 57
137100 TATTTTCTTT
137110 AAAT-AATTTTCAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTTTCAAAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTCCTTAA
** **
137167 AAATAAATTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATAAATTTTCAAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
137225 AAATCAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAAT-AAATTTTC--AAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
137286 AAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAA
1 AAATAAATTTTCAAAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTCCTTAA
** *
137344 AAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAATAAATTTTCAAAAAAA-TATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
137403 AAGTAAATTTTCAAAAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAATTTTCAAAAAAATATTTTTG-AGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
137461 AAATCAAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGGAAGTATCAATTTTCCTTAA
1 AAAT--AAATTTTCAAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTAA
* *
137521 AAATAAATTTTC-AAAAAATAGTTTTGAGGAAAGTTGAAAGTATCAATTTTCCTTGAA
1 AAATAAATTTTCAAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTT-AA
* * *
137578 AATTAAAGTTTCAAAAGAATATTTTT-AGAAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAATTTTCAAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCC
137631 CTGCACAAAA
Statistics
Matches: 414, Mismatches: 35, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
56 24 0.06
57 35 0.08
58 190 0.46
59 61 0.15
60 59 0.14
61 45 0.11
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (57 bp):
AAATAAATTTTCAAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:137244 original size:117 final size:116
Alignment explanation
Indices: 137117--137630 Score: 750
Period size: 119 Copynumber: 4.4 Consensus size: 116
137107 TTTAAATAAT
137117 TTTCAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TTTCAAAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
* *
137182 AAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAG
65 AAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
*
137234 TTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCA
1 TTTC--AAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
* * * * *
137299 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT-AAAT
63 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
** * *
137352 TTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAGTAAATTTTCAA
1 TTTCAAAAAAA-TATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
* *
137417 AAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAAT
64 AAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAG
*
137471 TTTCAAAAAAATATTTTTGAGAAAAAGTTGGAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TTTCAAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
*
137536 AAATAG--TTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAG
65 AAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
*
137586 TTTCAAAAGAATATTTTT-AGAAAAAGTTGAAAGTATCAATTTTCC
1 TTTCAAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCC
137631 CTGCACAAAA
Statistics
Matches: 363, Mismatches: 26, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
114 26 0.07
115 20 0.06
116 38 0.10
117 105 0.29
118 59 0.16
119 115 0.32
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (116 bp):
TTTCAAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
Found at i:137417 original size:177 final size:174
Alignment explanation
Indices: 137102--137628 Score: 773
Period size: 177 Copynumber: 3.0 Consensus size: 174
137092 TTTTGTTCTA
* *
137102 TTTTCTTTAAAT-AATTTTCAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTA
1 TTTTCTTAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
* *
137166 AAAATAAATTTTC-AAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATC
66 AAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-
137230 AAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
130 AAAGTTTC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
*
137277 TTTTCTTAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTT
1 TTTTCTT-AAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT
*
137342 AAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAAAG
65 AAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-
* * *
137406 TAAATTTTCAAAAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAAT
129 TAAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
* * * *
137452 TTTCCTTGAAAATCAAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGGAAGTATCAATTTTCC
1 TTTTCTT-AAAAT--AAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
137517 TTAAAAATAAATTTTCAAAAAATA--G-TTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTGAA
63 TTAAAAATAAATTTTCAAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
* *
137578 AATTAAAGTTTCAAAAGAATATTTTT-AGAAAAAGTTGAAAGTATCAAT
127 AA-TAAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
137626 TTT
1 TTT
137629 CCCTGCACAA
Statistics
Matches: 322, Mismatches: 22, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
174 47 0.15
175 85 0.26
176 5 0.02
177 141 0.44
178 44 0.14
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.36
Consensus pattern (174 bp):
TTTTCTTAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
AAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATA
AAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:144190 original size:11 final size:11
Alignment explanation
Indices: 144174--144200 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
144164 TATTTTGCTT
144174 AAAAAAAGAAA
1 AAAAAAAGAAA
144185 AAAAAAAGAAA
1 AAAAAAAGAAA
144196 AAAAA
1 AAAAA
144201 TAATAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:145112 original size:49 final size:49
Alignment explanation
Indices: 145038--145516 Score: 456
Period size: 49 Copynumber: 9.8 Consensus size: 49
145028 TTTCGAGAAC
* * *
145038 AGATGAGATCTTTAAAGTTATTGAGCCTCTGCTTAGAAGAGCTTTTTCCA
1 AGATGA-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCA
* * *
145088 GGATGAATCTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCCTTTTT-CA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTCCA
* * * * **
145137 AGATGATTTTTTAAAATTGTTGAGCCTCTGCTCATATAAGCTTTTTCCA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCA
* * * * **
145186 ATATGAATTTTTAAAGTTGTTGAGCCTTTACTTAGAGAAGCATTTTTTTA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGC-TTTTTCCA
** *
145236 AGATGAATTTTTAAAGTTGTAAAGCCTCTGCTTAGAGGAGC-ATTTCCTA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCC-A
* * * *
145285 AGATGATTTTTTAAAGTTGTGGAGCCTCAGTTTAGAGGAGCTTTTTCCA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCA
* *
145334 A-ATGAATTTTTAAAGTCGTTGAGCCTCTACTTAGAGGAGCTTTTTCCA
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCA
* * * * *
145382 AGATGATTTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAACCCTTTT---
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAG-GAGCTTTTTCCA
* * * * *
145429 --AT--ATTTTCAAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTTCCCA
1 AGATGAATTTT-TAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTT-CCA
* * * *
145476 AGATGAATCTTTAAAATTGTTGAGCCTTTGCTTAGAAGAGC
1 AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGC
145517 CCTTTTAAAT
Statistics
Matches: 345, Mismatches: 68, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
43 10 0.03
44 20 0.06
45 2 0.01
48 51 0.15
49 173 0.50
50 85 0.25
51 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (49 bp):
AGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCA
Found at i:145399 original size:196 final size:198
Alignment explanation
Indices: 145038--145420 Score: 504
Period size: 196 Copynumber: 1.9 Consensus size: 198
145028 TTTCGAGAAC
** * *
145038 AGATGAGATCTTTAAAGTTATTGAGCCTCTGCTTAGAAGAGCTTTTTCCAGGATGAATCTTTAAA
1 AGATGAGATCTTTAAAGTTATAAAGCCTCTGCTTAGAAGAGCTATTTCCAAGATGAATCTTTAAA
* * * * *
145103 GTTATTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGATTTTTTAAAATTGTTGAGCCTCTGC
66 GTTATGGAGCCTCAGCTTAGAGGAGCCTTTTTCAAGATGAATTTTTAAAATCGTTGAGCCTCTAC
* * *
145168 TCATATAAGCTTTTTCCAATATGAATTTTTAAAGTTGTTGAGCCTTTACTTAGAGAAGCATTTTT
131 TCAGAGAAGCTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTTTACTTAGAGAAGCATTTTT
145233 TTA
196 TTA
* * * * *
145236 AGATGA-ATTTTTAAAGTTGTAAAGCCTCTGCTTAGAGGAGC-ATTTCCTAAGATGATTTTTTAA
1 AGATGAGATCTTTAAAGTTATAAAGCCTCTGCTTAGAAGAGCTATTTCC-AAGATGAATCTTTAA
* * *
145299 AGTTGTGGAGCCTCAGTTTAGAGGAG-CTTTTTCCAA-ATGAATTTTTAAAGTCGTTGAGCCTCT
65 AGTTATGGAGCCTCAGCTTAGAGGAGCCTTTTT-CAAGATGAATTTTTAAAATCGTTGAGCCTCT
* * * *
145362 ACTTAGAGGAGCTTTTTCCAAGATGATTTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAA
129 ACTCAGAGAAGCTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTTTACTTAGAGAA
145421 ACCCTTTTAT
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
196 86 0.54
197 67 0.42
198 6 0.04
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (198 bp):
AGATGAGATCTTTAAAGTTATAAAGCCTCTGCTTAGAAGAGCTATTTCCAAGATGAATCTTTAAA
GTTATGGAGCCTCAGCTTAGAGGAGCCTTTTTCAAGATGAATTTTTAAAATCGTTGAGCCTCTAC
TCAGAGAAGCTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTTTACTTAGAGAAGCATTTTT
TTA
Found at i:145548 original size:94 final size:93
Alignment explanation
Indices: 145345--145549 Score: 295
Period size: 94 Copynumber: 2.2 Consensus size: 93
145335 ATGAATTTTT
* * * *
145345 AAAGTCGTTGAGCCTCTACTTAGAGGAGCTTTTTCCAAGATGATTTTTTAAAGTTGTTGAGCCTT
1 AAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTTTCCAAGATGAATCTTTAAAATTGTTGAGCCTT
*
145410 TGCTTAGAGAAACCCTTTTATATTTTCA
66 TGCTTAGAGAAACCCTTTTAAATTTTCA
* * *
145438 AAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTTCCCAAGATGAATCTTTAAAATTGTTGAGCCT
1 AAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTTT-CCAAGATGAATCTTTAAAATTGTTGAGCCT
*
145503 TTGCTTAGA-AGAGCCCTTTTAAATTTTCA
65 TTGCTTAGAGA-AACCCTTTTAAATTTTCA
*
145532 AAAGTCATTGAGCCTCTA
1 AAAGTCGTTGAGCCTCTA
145550 TTGAGAAAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
93 31 0.32
94 66 0.68
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (93 bp):
AAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTTTCCAAGATGAATCTTTAAAATTGTTGAGCCTT
TGCTTAGAGAAACCCTTTTAAATTTTCA
Found at i:145759 original size:9 final size:9
Alignment explanation
Indices: 145745--145779 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
145735 TTATTCATTA
145745 TTTTTTTTC
1 TTTTTTTTC
145754 TTTTTTTTC
1 TTTTTTTTC
*
145763 TTTTCTTTCC
1 TTTT-TTTTC
145773 TTTTTTT
1 TTTTTTT
145780 GATAGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:148897 original size:181 final size:180
Alignment explanation
Indices: 147410--150211 Score: 1870
Period size: 181 Copynumber: 15.7 Consensus size: 180
147400 TCTATTGAAC
* * * * * * * * * *
147410 AAATCTTTTACATATTGA-TTTTCAAAAGATCAATATATTTGTGTTATCTCATTCCAAATAAACT
1 AAATCTTTTACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTCC-AATAAGCT
* * * * * ** ** * *
147474 TGAATGAGTGGAAACAATTGTTTTATGACAAAAGAAATTGTCATAACAATTAGATATAGATAATT
64 TGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * * * *
147539 GTTCAAATAGTCATAAATATTTAAACTTATTTAGTAAATAAATCTATTTTTT
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * * * *
147591 TAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTGTTATTATT-TT-GAATAAGTTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATT-TTATTCCAATAAGCTT
* * * * ** * ** *
147654 GTATGAACAGAAATATTTATTTTATAATTAAATAAAAGGTCATAACAATTTGAAATAAATAATTG
65 GTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTG
* * * * *
147719 TTCAAATAGAT-ATAACTATTTGAACTTACTT-AGTAAACAAATATATTTTTT
130 TTTAAATAG-TCATAACTATTTGAACTT-GTTCAGTAAATAGATTTATTTTTT
* * *
147770 AAATCTTTTACTTATTAAATTTT-AGAATATTAATAAATTAATATTATTTTATTTCAA-AAGAAC
1 AAATCTTTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTCCAATAAG--C
* * * * * * *** *
147833 CTATATAAATAGAAATAAATGTTTTATGA-AAAGACAAAAAGGTCA-AA-GCAATTTTTTATAAA
63 TTGTATGAATAGAAACAATTATTTTATGACAAA-AC-AAAAGGTCATAATG--ATTTGAAATAGA
* * * **
147895 TAATTATTTAAATAGCCATAATTATTTGAACTTGTTTGGTAAATAGATTTATTTTTT
124 TAATTGTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * *
147952 AAATCTTTTTGC-TATTAA-TTTTCAAAATATTAATAAATTAGTATTTTTTTATTCCAAATAAGT
1 AAATC-TTTTACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTCC-AATAAGC
* * ** *
148015 TTGTATGAATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAAT
63 TTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAAT
* * * * **
148080 TATTTAAATTGTCATAACTATATGAGCAGGTTCAAG-AAATA-ATTTTATTTTTT
128 TGTTTAAATAGTCATAACTATTTGAACTTGTTC-AGTAAATAGA-TTTATTTTTT
* * * *
148133 AAATC--TT--TTATTAATTTTT-AGAATACTAATAAATTAATATTATTTTATTCCCAAAAAGTT
1 AAATCTTTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATT-CCAATAAGCT
* * * * *
148193 TGTATGAATACAAACAATTATTTTATGATAAAACAACAGGTCATAATGATTTAAAATTGATAATT
64 TGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * *
148258 -TTTCAAATAGTTATAACTATTTGAACTTGTTTAGTAAACT-GATTCATTTTTT
129 GTTT-AAATAGTCATAACTATTTGAACTTGTTCAGTAAA-TAGATTTATTTTTT
* * * **
148310 AAA-CTTTTACTAATTAATTTTTTAAATTTTAATAAAATT-GTATTATTTTATGTAGAATAAGCC
1 AAATCTTTTACTTATTAATTTTTCAAATATTAAT-AAATTAGTATTATTTTAT-TCCAATAAG-C
* * * * * * * * * *
148373 TT-TATGAACATAAATAAGTGTTTTATAACAAAACAAAACGTCATAAAGATTTGAAATAGTTAGT
63 TTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAAT
** ** * *
148437 TGTCCAAATTTTCATAACTATTTGAATCTT-TTCA-AATAATAGATTTATTTTTC
128 TGTTTAAATAGTCATAACTATTTGAA-CTTGTTCAGTA-AATAGATTTATTTTTT
* * * * * * * *
148490 ATATCTTTTAATT-TTAAAATTTTAAAATATT-ATAAATTAGCAATATATTGATTTCAAATAAGC
1 AAATCTTTTACTTATT-AATTTTTCAAATATTAATAAATTAGTATTAT-TTTA-TTCCAATAAGC
* * * **
148553 TTGTATGAATAGAAATAATTGTTTTATGGCAAAACAAATTGTCATAATGATTTG----AG---AT
63 TTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAAT
* * * * ** *
148611 TATTCATATAGAT-ATAACTATTTGAACTTGGTC-GTTAAGCAAATTTA-TTTTT
128 TGTTTAAATAG-TCATAACTATTTGAACTTGTTCAG-TAAATAGATTTATTTTTT
* * * ** *
148663 AAATCTTTTACTTATTAA-TTATCAAAATATTAATATATTAGCACAACTTTATTCCAATCAAGCT
1 AAATCTTTTACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTCCAAT-AAGCT
* * * * * * * *
148727 TGAATGAGTAGAAACAATTATTTTATGACAAAAGAAGAGGCCATAAGGATTAGATATAGATAATT
64 TGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * * *
148792 ATTTGAATAGTCACAACTATTTAAACTTATTCCGTAAATAGATTTATTTTTT
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * *
148844 AAATCTTTTACATATTAATTTTTCAAATATTAATAAATTACTATTATTTTATTCCAAATAAACTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCC-AATAAGCTT
* * * * * ** * *
148909 GTACGAATAGAAATATTTATTTTATGATAAAATAAAAGGTTGTTATGATTTGAAATAAATAATTG
65 GTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTG
* ** * * *
148974 -TT-CA-A---AT-ACTATTCAAACTTGCTCAATAAATAGATTTACTTTTT
130 TTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* ** *
149018 AAATCTTTTGCTTATTAATTTTTTGAATATTAATAAATTAGTATTATTTTATTCCAAATAAACTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCC-AATAAGCTT
* * * * * * * * * * *
149083 ATCTGAATAAAAATAAATGTTTTATGACAAAACAAAAAGTCA-AAGTAATTTTATATAAATAATT
65 GTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATT
* *
149147 GTTCAAATAGTC--AACTATTTGAAC-TGTTCGGTAAATAGATTTATTTTTT
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * * * * *
149196 ACATCTTTTTCTTACTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTA-TTCCAATAAGCTT
* * * * * * *
149261 GTATGAAGA-AAACTAATTATTTTATGACTAAATAAAATGTCAAAAAGATTTGAAATGGATAATT
65 GTATGAATAGAAAC-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * *
149325 GTTT-AATTGTCATAACTATTTGAGCATGTTCGGTAAACA-A--TATTTTTT
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * **
149373 --ATCTTTTACTTATTCATTTTT-AGAATA-TAATAAATTAGAATTGCTTTATTCCGAA-AAGGC
1 AAATCTTTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTCC-AATAA-GC
* * * * * * ** * * *
149433 TTGTGTAAACAGAAACAATTGTTTTATAATAAAACAAAATATCAAAATGATTTAAAATAAATAAT
63 TTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAAT
* * * * *
149498 T-TTTCAAATAGACATAACTCTTTAAACTT-TTCAATAAATAGATTTATGTTTT
128 TGTTT-AAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * * * *
149550 AAATCTTTTACTTATT-ACTTTTCATAATATTGATATATTAGTATTATTTTATTTCGAGTAAGCT
1 AAATCTTTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTA-TTCCAATAAGCT
* * * * *
149614 TGTATAAACAGAAACAATTATTTTAAGACAAAACAAAAGGTAATAATGATTTTAAATAGATAATT
64 TGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * * * **
149679 ATTCAAATAATTATAACTATTTGAACTTATTCAATAAATA-ATTT-TTTTAAAA
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTT--TT
* * ** * *
149731 AAATATTTTACTTATTGATTTTTGGAATATTAATAAATTAGTATT-TGTTATTTCTAATAAGCTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTA-TTCCAATAAGCTT
* * * * *
149795 GTATGAACTGAAAAAAAATTATTTTATGACAAAACAAAAGGTCATAACT-ATTTAAAATAGGTAG
65 GTATGAA-T-AGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAA
* ** * * * * * *
149859 TTCTCCAAATAATCATAACTATTTTTAACTTTTTC-GATTAACAGATTTACTTTTT
127 TTGTTTAAATAGTCATAACTA-TTTGAACTTGTTCAG-TAAATAGATTTATTTTTT
* * * * ** **
149914 AAATC-TTTAATTTTTAATTTTTAAAATATTAATAAATTAGTATTATATTGATTTTGAATAAATT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTAT-TTTA-TTCCAATAAGCT
* ** * *
149978 TGTATGAATAGAAACAATTATTTTATGACAAAATAAAATATCATAATGATTTGAAAAAAATAATT
64 TGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * * * ** * *
150043 GTTCAAAAAGACATAACTATTTGGATTTATTTGGCAAATA-A---A-ATTTT
129 GTTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
* * * * * **
150090 AAATGTTTTAATTATTAA-TTTTGAAATA-CAATATATTAGTATTATTTTATTTTGAATAAGCTT
1 AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTA-TTCCAATAAGCTT
* * * * * *
150153 GAATGAGTAGAAACAATTATGTTATGACAAAAGAAAAGGTCATAAT-ATTAGATATAGAT
65 GTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
150212 TGTTAGCCTT
Statistics
Matches: 2068, Mismatches: 436, Indels: 242
0.75 0.16 0.09
Matches are distributed among these distances:
172 9 0.00
173 94 0.05
174 313 0.15
175 63 0.03
176 25 0.01
177 170 0.08
178 140 0.07
179 201 0.10
180 307 0.15
181 382 0.18
182 302 0.15
183 33 0.02
184 26 0.01
185 3 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
AAATCTTTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCCAATAAGCTTG
TATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGT
TTAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAGATTTATTTTTT
Found at i:149680 original size:887 final size:891
Alignment explanation
Indices: 147701--150049 Score: 2077
Period size: 887 Copynumber: 2.6 Consensus size: 891
147691 GGTCATAACA
* *
147701 ATTTGAAATAAATAATTGTTCAAATAGATATAACTATTTGAACTTACTT-AGTAAACAAATATAT
1 ATTTGAAATAAATAATT-TTCAAATAGATATAACTATTTGAACTTA-TTCAATAAACAAATTTA-
* * * *
147765 TTTTTAAATCTTTTACTTATTAAATTTT-AGAATATTAATAAATTAATATTATTTTATTTCAAAA
63 TTTTTAAATCTTTTACTTATT-AATTTTCAAAATATTAATATATTAGTATTATTTTATTTCATAA
* * * * * *
147829 GAACCTATATAAATAGAAATAAATGTTTTATGA-AAAGACAAAAAGGTCA-AAGCAATTTTTTAT
127 G--CTTGTATAAATAGAAACAATTATTTTATGACAAA-AC-AAAAGGTCATAAG--ATTTTATAT
* * * * **
147892 AAATAATTATTTAAATAGCCATAATTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATC
186 AGATAATTATTTAAATAGTCATAACTATTTGAACTTATTCAGTAAATAGATTTATTTTTTAAATC
* *
147957 TTTTTGCTATTAA-TTTTCAAAATATTAATAAATTAGTATTTTTTTATTCCAAATAAGTTTGTAT
251 -TTTTACTATTAATTTTTC-AAATATTAATAAATTAGTA-TTTTTTATTCCAAATAAGCTTGTAT
* * *
148021 GAATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAATTATTTA
313 GAATAGAAAAAATTATTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAATTATTCA
** * *
148086 AATTGTCATAACTATATGAGCAGGTTCAAGAAATAATTTTATTTTTTAAATCTTTTATTAATTTT
378 AATACTCATAACTATA-GAGCAGGCTCAAGAAATAATTTTACTTTTTAAATCTTTTATTAATTTT
** * * *
148151 TAGAATACTAATAAATTAATATTATTTTATTCCCAAAAAGTTTGTATGAATACAAACAATTATTT
442 TAGAATACTAATAAATTAATATTATTTTATTCCCAAAAAACTTATATGAATAAAAACAAATATTT
* * * * ** * *
148216 TATGATAAAACAACAGGTCATAATGATTTAAAATTGATAATTTTTCAAATAGTTATAACTATTTG
507 TATGACAAAACAAAAAGTCATAATAATTTAAAATAAATAATTGTTCAAATAGTTACAACTATTTG
* * * *
148281 AACTTGTTTAGTAAACTGATTCATTTTTTAAACTTTTACTAATTAATTTTTTAAATTTTAATAAA
572 AACTTGTTCAGTAAACTGATTCATTTTTTAAACTTTTACTAACTAATTTTTAAAATATTAATAAA
* *
148346 ATTGTATTATTTTATGTAGAATAAGCCTTTATGAACATAAATAAGTGTTTTATAACAAAACAAAA
637 ATTATATTATTTTATGTAGAATAAGCCTTTATGAACATAAATAAGTATTTTATAACAAAACAAAA
* * * * * *
148411 CGTCATAAAGATTTGAAATAGTTAGTTGTCCAAATTTTCATAACTATTTGAATCTTTTCAAATAA
702 CGTCAAAAAGATTTGAAATAGATAATTGTCCAAATTGTCATAACTATTTGAAGCTGTTCAAATAA
* * *
148476 TAGATTTATTTTTCATATCTTTTAATTTTAAAATTTTAAAATATTATAAATTAGCAATATATTGA
767 TACATATATTTTT-ATATCTTTTAATTTTAAAATTTTAAAATATAATAAATTAGCAATATATTGA
* * * * ** * * *
148541 TTTCAAATAAGCTTGTATGAATAGAAATAATTGTTTTATGGCAAAACAAATTGTCATAATG
831 TTCCAAATAAGCTTGTATAAACAGAAACAATTGTTTTATAACAAAACAAAATATCAAAATG
* * ** ** *
148602 ATTTGAGAT---T-A--TTCATATAGATATAACTATTTGAACTTGGTCGTTAAGCAAATTTATTT
1 ATTTGAAATAAATAATTTTCAAATAGATATAACTATTTGAACTTATTCAATAAACAAATTTATTT
* * ** * *
148661 TTAAATCTTTTACTTATTAATTATCAAAATATTAATATATTAGCACAACTTTATTCCAATCAAGC
66 TTAAATCTTTTACTTATTAATTTTCAAAATATTAATATATTAGTATTATTTTATTTC-AT-AAGC
* * * * * * **
148726 TTGAATGAGTAGAAACAATTATTTTATGACAAAAGAAGAGGCCATAAGGATTAGATATAGATAAT
129 TTGTATAAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-GATTTTATATAGATAAT
* * * *
148791 TATTTGAATAGTCACAACTATTTAAACTTATTCCGTAAATAGATTTATTTTTTAAATCTTTTACA
193 TATTTAAATAGTCATAACTATTTGAACTTATTCAGTAAATAGATTTATTTTTTAAATCTTTTAC-
* * *
148856 TATTAATTTTTCAAATATTAATAAATTACTATTATTTTATTCCAAATAAACTTGTACGAATAGAA
257 TATTAATTTTTCAAATATTAATAAATTAGTATT-TTTTATTCCAAATAAGCTTGTATGAATAGAA
* * * ** * ** *
148921 ATATTTATTTTATGATAAAATAAAAGGTTGTTATGATTTGAAATAAATAATTGTTCAAATACT-A
321 AAAATTATTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAATTATTCAAATACTCA
* ** * *
148985 T-TC-A-A-A-CTTGCTCAATAAATAGA-TTTACTTTTTAAATCTTTTGCTTATTAATTTTTTGA
386 TAACTATAGAGCAGGCTCAAGAAATA-ATTTTACTTTTTAAATC--TT--TTATTAATTTTTAGA
* * * * *
149044 ATATTAATAAATTAGTATTATTTTATT-CCAAATAAACTTATCTGAATAAAAATAAATGTTTTAT
446 ATACTAATAAATTAATATTATTTTATTCCCAAA-AAACTTATATGAATAAAAACAAATATTTTAT
* *
149108 GACAAAACAAAAAGTCA-AAGTAATTTTATATAAATAATTGTTCAAATAG-T-CAACTATTTGAA
510 GACAAAACAAAAAGTCATAA-TAATTTAAAATAAATAATTGTTCAAATAGTTACAACTATTTGAA
* * * * *
149170 C-TGTTCGGTAAA-TAGATTTATTTTTTACATCTTTTTCTTACTAATTTTTAAAATATTAAT-AA
574 CTTGTTCAGTAAACT-GATTCATTTTTTA-AACTTTTACTAACTAATTTTTAAAATATTAATAAA
* * * * * *
149232 ATTAATATTATTTTATTTCA-AATAAG-CTTGTATGAAGA-AAACTAATTATTTTATGACTAAAT
637 ATT-ATATTATTTTATGT-AGAATAAGCCTT-TATGAACATAAA-TAAGTATTTTATAACAAAAC
* * **
149294 AAAATGTCAAAAAGATTTGAAATGGATAATTGT-TTAATTGTCATAACTATTTG-AGCATGTTC-
698 AAAACGTCAAAAAGATTTGAAATAGATAATTGTCCAAATTGTCATAACTATTTGAAGC-TGTTCA
** * * * *
149356 GGTAA-ACA-ATATTTTT-TATCTTTTACTTATT-CATTTTTAGAATATAATAAATTAG-AAT-T
762 AATAATACATATATTTTTATATCTTTTAATT-TTAAAATTTTAAAATATAATAAATTAGCAATAT
* * * * *
149415 GCTTTATTCCGAAA-AGGCTTGTGTAAACAGAAACAATTGTTTTATAATAAAACAAAATATCAAA
826 -ATTGATTCC-AAATAAGCTTGTATAAACAGAAACAATTGTTTTATAACAAAACAAAATATCAAA
149479 ATG
889 ATG
* * * * * *
149482 ATTTAAAATAAATAATTTTTCAAATAGACATAACTCTTTAAACTT-TTCAATAAATAGATTTATG
1 ATTTGAAATAAATAA-TTTTCAAATAGATATAACTATTTGAACTTATTCAATAAACAAATTTAT-
* * *
149546 TTTTAAATCTTTTACTTATTACTTTTCATAATATTGATATATTAGTATTATTTTATTTCGAGTAA
64 TTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATATATTAGTATTATTTTATTTC-A-TAA
* * * *
149611 GCTTGTATAAACAGAAACAATTATTTTAAGACAAAACAAAAGGTAATAATGATTTTAAATAGATA
127 GCTTGTATAAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-GATTTTATATAGATA
* * * * ** *
149676 ATTATTCAAATAATTATAACTATTTGAACTTATTCAATAAATA-ATTT-TTTTAAAAAAATATTT
191 ATTATTTAAATAGTCATAACTATTTGAACTTATTCAGTAAATAGATTTATTTT--TTAAATCTTT
* ** * * *
149739 TACTTATTGATTTTTGGAATATTAATAAATTAGTATTTGTTATTTCTAATAAGCTTGTATGAACT
254 TAC-TATTAATTTTTCAAATATTAATAAATTAGTATTTTTTATTCCAAATAAGCTTGTATGAA-T
* * * * ** * * *
149804 GAAAAAAAATTATTTTATGACAAAACAAAAGGTCATAACTATTTAAAATAGGTAGTTCTCCAAAT
317 -AGAAAAAATTATTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAATTATTCAAAT
* ** * **** * ** * *
149869 AATCATAACTATTTTTAACTTTTTCGATTAACAGA-TTTACTTTTTAAATCTTTAATTTTTAATT
381 ACTCATAACTA--TAGAGCAGGCTCAAGAAATA-ATTTTACTTTTTAAATC-TT--TTATTAATT
* * * * *** * * * * *
149933 TTTAAAATATTAATAAATTAGTATTATATTGATTTTGAATAAATTTGTATGAATAGAAACAATTA
440 TTTAGAATACTAATAAATTAATATTAT-TTTATTCCCAAAAAACTTATATGAATAAAAACAAATA
* *
149998 TTTTATGACAAAATAAAATA-TCATAATGATTTGAAAA-AAATAATTGTTCAAA
504 TTTTATGACAAAACAAAA-AGTCATAATAATTT-AAAATAAATAATTGTTCAAA
150050 AAGACATAAC
Statistics
Matches: 1159, Mismatches: 236, Indels: 111
0.77 0.16 0.07
Matches are distributed among these distances:
879 1 0.00
880 58 0.05
881 34 0.03
882 2 0.00
883 8 0.01
884 3 0.00
885 35 0.03
886 92 0.08
887 311 0.27
888 61 0.05
889 102 0.09
890 2 0.00
891 10 0.01
892 176 0.15
893 76 0.07
894 41 0.04
895 40 0.03
896 90 0.08
897 8 0.01
898 1 0.00
901 8 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (891 bp):
ATTTGAAATAAATAATTTTCAAATAGATATAACTATTTGAACTTATTCAATAAACAAATTTATTT
TTAAATCTTTTACTTATTAATTTTCAAAATATTAATATATTAGTATTATTTTATTTCATAAGCTT
GTATAAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAAGATTTTATATAGATAATTAT
TTAAATAGTCATAACTATTTGAACTTATTCAGTAAATAGATTTATTTTTTAAATCTTTTACTATT
AATTTTTCAAATATTAATAAATTAGTATTTTTTATTCCAAATAAGCTTGTATGAATAGAAAAAAT
TATTTTATGACAAAATAAAAGGTCATAACAATTTGAAATAAATAATTATTCAAATACTCATAACT
ATAGAGCAGGCTCAAGAAATAATTTTACTTTTTAAATCTTTTATTAATTTTTAGAATACTAATAA
ATTAATATTATTTTATTCCCAAAAAACTTATATGAATAAAAACAAATATTTTATGACAAAACAAA
AAGTCATAATAATTTAAAATAAATAATTGTTCAAATAGTTACAACTATTTGAACTTGTTCAGTAA
ACTGATTCATTTTTTAAACTTTTACTAACTAATTTTTAAAATATTAATAAAATTATATTATTTTA
TGTAGAATAAGCCTTTATGAACATAAATAAGTATTTTATAACAAAACAAAACGTCAAAAAGATTT
GAAATAGATAATTGTCCAAATTGTCATAACTATTTGAAGCTGTTCAAATAATACATATATTTTTA
TATCTTTTAATTTTAAAATTTTAAAATATAATAAATTAGCAATATATTGATTCCAAATAAGCTTG
TATAAACAGAAACAATTGTTTTATAACAAAACAAAATATCAAAATG
Found at i:151011 original size:20 final size:21
Alignment explanation
Indices: 150986--151041 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
150976 TTTTTCAGAA
150986 AAAGGATCGATCCCCCA-TGT
1 AAAGGATCGATCCCCCATTGT
* *
151006 AAAGGATCGATCACCTATTGT
1 AAAGGATCGATCCCCCATTGT
151027 AAAGGATCGATCCCC
1 AAAGGATCGATCCCC
151042 TCTTAAAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (21 bp):
AAAGGATCGATCCCCCATTGT
Found at i:151029 original size:21 final size:20
Alignment explanation
Indices: 150986--151038 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
150976 TTTTTCAGAA
*
150986 AAAGGATCGATCCCCCATGT
1 AAAGGATCGATCACCCATGT
*
151006 AAAGGATCGATCACCTATTGT
1 AAAGGATCGATCACCCA-TGT
151027 AAAGGATCGATC
1 AAAGGATCGATC
151039 CCCTCTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (20 bp):
AAAGGATCGATCACCCATGT
Found at i:151177 original size:74 final size:74
Alignment explanation
Indices: 151030--151218 Score: 236
Period size: 74 Copynumber: 2.5 Consensus size: 74
151020 CTATTGTAAA
*
151030 GGATCGATCCCCTCTTAAAGGGATTGATCAGTTGCTCAAACAGAATGACCCCTAAGTCTGAAAAC
1 GGATCGATCCCCTCTTAAAGGGATTGATCAGTTACTCAAACAGAATGACCCCTAAGTCTGAAAAC
*
151095 CCAGAAAAG
66 CCAAAAAAG
* * ** * * ** *
151104 GGATTGATCCCTTCTTAAAAGGGATTGATTGGTTACTCAGATAGAATGTTCCCTAA-TTTGAAAA
1 GGATCGATCCCCTCTT-AAAGGGATTGATCAGTTACTCAAACAGAATGACCCCTAAGTCTGAAAA
151168 CCCAAAAAAG
65 CCCAAAAAAG
* *
151178 GGATCAATCCCCTCTTAAAGGGATTGATCAGGTACTGCAAA
1 GGATCGATCCCCTCTTAAAGGGATTGATCAGTTACT-CAAA
151219 TCAGGCACAA
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
73 17 0.18
74 46 0.48
75 32 0.34
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (74 bp):
GGATCGATCCCCTCTTAAAGGGATTGATCAGTTACTCAAACAGAATGACCCCTAAGTCTGAAAAC
CCAAAAAAG
Found at i:152416 original size:157 final size:157
Alignment explanation
Indices: 152120--152444 Score: 379
Period size: 157 Copynumber: 2.1 Consensus size: 157
152110 TTTCTTATTA
* * * * * * *
152120 ATTTTTGAAATATTAATTAATTAGTATTATGTTCTTTCAAATAAGTTTGTATGAACAGAAATATT
1 ATTTTTCAAATATAAATAAATTAGTATTATGTTCTTTCAAATAAGCTTGTATGAAAAGAAACAAT
* * * *
152185 TGTTTTATGATAAAATAAAAAGTTATAATGATTTGAAATAAATAATTATTCAAATAGACATAACT
66 TGTTTTATGACAAAACAAAAAGTCAAAATGATTTGAAATAAATAATTATTCAAATAGACATAACT
* *
152250 ATATAAACTTGTTCAGTAAATAGAATT
131 ATATAAACTTATTCAGTAAAAAGAATT
*
152277 ATTTTTTAAATATAAATAAATTAGTATTAT-TT-TATTCTAAATAAGCTTGTATGAAAAGAAACA
1 ATTTTTCAAATATAAATAAATTAGTATTATGTTCT-TTC-AAATAAGCTTGTATGAAAAGAAACA
* * * *
152340 ATTGTTTTATGACAAAGCAAAATGTCAAAACT-ATTT-AATATAAATAATTGTTCAAATAGTCAT
64 ATTGTTTTATGACAAAACAAAAAGTCAAAA-TGATTTGAA-ATAAATAATTATTCAAATAGACAT
* * * * *
152403 AATTATTTGAACTTATTTAGTAAAAAGATTT
127 AACTATATAAACTTATTCAGTAAAAAGAATT
152434 ATTTTTCAAAT
1 ATTTTTCAAAT
152445 CTTTTAACTA
Statistics
Matches: 141, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
155 1 0.01
156 7 0.05
157 132 0.94
158 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (157 bp):
ATTTTTCAAATATAAATAAATTAGTATTATGTTCTTTCAAATAAGCTTGTATGAAAAGAAACAAT
TGTTTTATGACAAAACAAAAAGTCAAAATGATTTGAAATAAATAATTATTCAAATAGACATAACT
ATATAAACTTATTCAGTAAAAAGAATT
Found at i:153820 original size:17 final size:17
Alignment explanation
Indices: 153800--153832 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
153790 ACCCTTTTCT
153800 AAATAAA-AAATAATTAA
1 AAATAAACAAA-AATTAA
153817 AAATAAACAAAAATTA
1 AAATAAACAAAAATTA
153833 TCATACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAACAAAAATTAA
Found at i:153869 original size:19 final size:19
Alignment explanation
Indices: 153856--153912 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
153846 ATCATGTAAT
153856 AATAATATAGTCATGCAAA
1 AATAATATAGTCATGCAAA
* *
153875 AATAATATAATTATGCTATAA
1 AATAATATAGTCATGC-A-AA
*
153896 TATAATATA-TCATGCAA
1 AATAATATAGTCATGCAA
153913 TTATTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 1 0.03
19 15 0.47
20 6 0.19
21 10 0.31
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (19 bp):
AATAATATAGTCATGCAAA
Found at i:154080 original size:14 final size:14
Alignment explanation
Indices: 154061--154099 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
154051 AAATAGGAGA
154061 AAAAAATCAAAAT-
1 AAAAAATCAAAATC
154074 AATAAAATCAAAATC
1 AA-AAAATCAAAATC
154089 AAAAAA-CAAAA
1 AAAAAATCAAAA
154100 AACAAACCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 15 0.62
15 2 0.08
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAAATCAAAATC
Found at i:154100 original size:20 final size:20
Alignment explanation
Indices: 154063--154105 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
154053 ATAGGAGAAA
* *
154063 AAAATCAAAATAATAAAATC
1 AAAATCAAAATAAAAAAAAC
154083 AAAATCAAAA-AACAAAAAAC
1 AAAATCAAAATAA-AAAAAAC
154103 AAA
1 AAA
154106 CCTGCAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.12
Consensus pattern (20 bp):
AAAATCAAAATAAAAAAAAC
Found at i:155658 original size:17 final size:17
Alignment explanation
Indices: 155618--155680 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
155608 CAAAGATTTC
*
155618 AGATTCACAAAGTTTTA
1 AGATTCACAAAGTTCTA
*
155635 AGTTTCACAAAGGTTCT-
1 AGATTCACAAA-GTTCTA
* **
155652 AGATTCACAAGAATTGGA
1 AGATTCACAA-AGTTCTA
155670 AGATTCACAAA
1 AGATTCACAAA
155681 AATTCGTAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
17 22 0.59
18 15 0.41
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (17 bp):
AGATTCACAAAGTTCTA
Found at i:156057 original size:45 final size:44
Alignment explanation
Indices: 155920--156295 Score: 362
Period size: 45 Copynumber: 8.4 Consensus size: 44
155910 AGGTTTATAG
** * *
155920 CCAAAA-TTCAAAGATTCTCATTCAAAAAATTTCAAGGTTTCATAT
1 CCAAAATTTCAAAGATTCTCATTC-AAAAATTT-TGGGATTCACAT
** * * * ** *
155965 CCAAGGTTCCAAAAATTCTTATTTGAAAATTTTGGGATT-ACGT
1 CCAAAATTTCAAAGATTCTCATTCAAAAATTTTGGGATTCACAT
*
156008 CCAAAATTTCAAAGATTCTCATTCAAGAAATTTTTGGATTCACAT
1 CCAAAATTTCAAAGATTCTCATTCAA-AAATTTTGGGATTCACAT
* * ** *
156053 CCAAAATTTCAAAAATTCTTATTTGAAAATTTTGGGATTAACAT
1 CCAAAATTTCAAAGATTCTCATTCAAAAATTTTGGGATTCACAT
* ** * *
156097 TCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAGATTTAGAT
1 CCAAAATTTCAAAGATTCTCATTC-AAAAATTTTGGGATTCACAT
* * *
156142 CCAAAGTTTCCAAGATTCTCATTTGAAAAATTTTGGGATTCACAT
1 CCAAAATTTCAAAGATTCTCA-TTCAAAAATTTTGGGATTCACAT
* * * *
156187 CCAAATTTTTAAAAATTCTCATTCAAAAAATTTAT-GAATATCACAT
1 CCAAAATTTCAAAGATTCTCATTC-AAAAATTT-TGGGAT-TCACAT
* *
156233 CCAAAATTTCAAAGATCCTCATTCAAGAATTTTGGGATTCACAT
1 CCAAAATTTCAAAGATTCTCATTCAAAAATTTTGGGATTCACAT
*
156277 CCAGAATTTCAAAGATTCT
1 CCAAAATTTCAAAGATTCT
156296 TATTTGAAAA
Statistics
Matches: 264, Mismatches: 58, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
43 21 0.08
44 78 0.30
45 123 0.47
46 42 0.16
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (44 bp):
CCAAAATTTCAAAGATTCTCATTCAAAAATTTTGGGATTCACAT
Found at i:156119 original size:22 final size:22
Alignment explanation
Indices: 156009--156124 Score: 74
Period size: 22 Copynumber: 5.2 Consensus size: 22
155999 GGATTACGTC
156009 CAAAATTTCAAAGATTCTCATT
1 CAAAATTTCAAAGATTCTCATT
*** * *
156031 CAAGAAATTT-TTGGATTCACATC
1 C-A-AAATTTCAAAGATTCTCATT
* *
156054 CAAAATTTCAAAAATTCTTATTT
1 CAAAATTTCAAAGATTCTCA-TT
* *** **
156077 GAAAATTT-TGGGATTAACATT
1 CAAAATTTCAAAGATTCTCATT
156098 CAAAATTTCAAAGATTCTCATT
1 CAAAATTTCAAAGATTCTCATT
156120 CAAAA
1 CAAAA
156125 AATTTTAAGA
Statistics
Matches: 63, Mismatches: 26, Indels: 10
0.64 0.26 0.10
Matches are distributed among these distances:
21 15 0.24
22 24 0.38
23 18 0.29
24 6 0.10
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (22 bp):
CAAAATTTCAAAGATTCTCATT
Found at i:156158 original size:134 final size:136
Alignment explanation
Indices: 156007--156305 Score: 356
Period size: 134 Copynumber: 2.2 Consensus size: 136
155997 TGGGATTACG
*
156007 TCCAAAATTTCAAAGATTCTCA-TTCAAGAAATTTTTGGATTCACATCCAAAATTTCAAAAATTC
1 TCCAAAATTTCAAAGATTCTCATTTCAA-AAATTTTGGGATTCACATCCAAAATTTCAAAAATTC
* ** * * *
156071 TTATT-TGAAAATTT-TGGGAT-TAACATTCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAA
65 TCATTCAAAAAATTTAT-GAATATAACATCCAAAATTTCAAAGATCCTCATTCAAAAAATTTTAA
156133 GATTTAGA
129 GATTTAGA
* * * * *
156141 TCCAAAGTTTCCAAGATTCTCATTTGAAAAATTTTGGGATTCACATCCAAATTTTTAAAAATTCT
1 TCCAAAATTTCAAAGATTCTCATTTCAAAAATTTTGGGATTCACATCCAAAATTTCAAAAATTCT
* * **
156206 CATTCAAAAAATTTATGAATATCACATCCAAAATTTCAAAGATCCTCATTC-AAGAATTTTGGGA
66 CATTCAAAAAATTTATGAATATAACATCCAAAATTTCAAAGATCCTCATTCAAAAAATTTTAAGA
* *
156270 TTCACA
131 TTTAGA
* * *
156276 TCCAGAATTTCAAAGATTCTTATTTGAAAA
1 TCCAAAATTTCAAAGATTCTCATTTCAAAA
156306 GCTTCTTTAA
Statistics
Matches: 139, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
134 57 0.41
135 54 0.39
136 28 0.20
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (136 bp):
TCCAAAATTTCAAAGATTCTCATTTCAAAAATTTTGGGATTCACATCCAAAATTTCAAAAATTCT
CATTCAAAAAATTTATGAATATAACATCCAAAATTTCAAAGATCCTCATTCAAAAAATTTTAAGA
TTTAGA
Found at i:156219 original size:90 final size:89
Alignment explanation
Indices: 155920--156295 Score: 436
Period size: 89 Copynumber: 4.2 Consensus size: 89
155910 AGGTTTATAG
* * * ** *
155920 CCAAAA-TTCAAAGATTCTCATTCAAAAAATTTCAAGGTTTCATATCCAAGGTTCCAAAAATTCT
1 CCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAA-GATTCACATCCAAAATTTCAAAAATTCT
* *
155984 TATTTGAAAATTTTGGGATT-ACGT
65 CATTTGAAAATTTTGGGATTCACAT
* ** *
156008 CCAAAATTTCAAAGATTCTCATTCAAGAAATTTTTGGATTCACATCCAAAATTTCAAAAATTCTT
1 CCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAGATTCACATCCAAAATTTCAAAAATTCTC
*
156073 ATTTGAAAATTTTGGGATTAACAT
66 ATTTGAAAATTTTGGGATTCACAT
* * * * * *
156097 TCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAGATTTAGATCCAAAGTTTCCAAGATTCTC
1 CCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAGATTCACATCCAAAATTTCAAAAATTCTC
156162 ATTTGAAAAATTTTGGGATTCACAT
66 ATTTG-AAAATTTTGGGATTCACAT
* * * * * *
156187 CCAAATTTTTAAAAATTCTCATTCAAAAAA-TTTATGAATATCACATCCAAAATTTCAAAGATCC
1 CCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAG-AT-TCACATCCAAAATTTCAAAAATTC
*
156251 TCA-TTCAAGAATTTTGGGATTCACAT
64 TCATTTGAA-AATTTTGGGATTCACAT
*
156277 CCAGAATTTCAAAGATTCT
1 CCAAAATTTCAAAGATTCT
156296 TATTTGAAAA
Statistics
Matches: 246, Mismatches: 36, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
88 49 0.20
89 95 0.39
90 80 0.33
91 22 0.09
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (89 bp):
CCAAAATTTCAAAGATTCTCATTCAAAAAATTTTAAGATTCACATCCAAAATTTCAAAAATTCTC
ATTTGAAAATTTTGGGATTCACAT
Found at i:157285 original size:20 final size:19
Alignment explanation
Indices: 157260--157297 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
157250 TTTAAGTTTC
*
157260 TTTTTTTTTTACTTTTTTTA
1 TTTTTTATTTA-TTTTTTTA
157280 TTTTTTATTTATTTTTTT
1 TTTTTTATTTATTTTTTT
157298 GCACTCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.87
Consensus pattern (19 bp):
TTTTTTATTTATTTTTTTA
Found at i:163732 original size:28 final size:27
Alignment explanation
Indices: 163687--163739 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
163677 AATTATACTG
163687 AAATATTTAATATGATATTTAAATTTT
1 AAATATTTAATATGATATTTAAATTTT
*
163714 AAATATTTTAATGTGATATTTAAATT
1 AAATA-TTTAATATGATATTTAAATT
163740 ATGAATCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (27 bp):
AAATATTTAATATGATATTTAAATTTT
Found at i:163752 original size:28 final size:28
Alignment explanation
Indices: 163687--163753 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
163677 AATTATACTG
*
163687 AAATAT-TTAATATGATATTTAAATTTT
1 AAATATGTTAATATGATATTTAAATTAT
* *
163714 AAATATTTTAATGTGATATTTAAATTAT
1 AAATATGTTAATATGATATTTAAATTAT
* *
163742 GAATCTGTTAAT
1 AAATATGTTAAT
163754 TAATATAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 6 0.18
28 28 0.82
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.49
Consensus pattern (28 bp):
AAATATGTTAATATGATATTTAAATTAT
Found at i:163837 original size:27 final size:29
Alignment explanation
Indices: 163806--163865 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
163796 AAAGTGTATT
*
163806 ATATTA-AAT-AAAATATTTATAATTCAA
1 ATATTACAATAAAAATATTTAAAATTCAA
* *
163833 ATATTACATTAAAAATTTTTAAAATTCAA
1 ATATTACAATAAAAATATTTAAAATTCAA
163862 ATAT
1 ATAT
163866 CACATTAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 2 0.07
29 20 0.71
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (29 bp):
ATATTACAATAAAAATATTTAAAATTCAA
Found at i:163858 original size:29 final size:29
Alignment explanation
Indices: 163815--163873 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
163805 TATATTAAAT
* *
163815 AAAATATTTATAATTCAAATATTACATTA
1 AAAATATTTAAAATTCAAATATCACATTA
*
163844 AAAATTTTTAAAATTCAAATATCACATTA
1 AAAATATTTAAAATTCAAATATCACATTA
163873 A
1 A
163874 CATTTTACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAATATTTAAAATTCAAATATCACATTA
Found at i:166477 original size:18 final size:18
Alignment explanation
Indices: 166426--166479 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
166416 AATATTTGGG
* *
166426 GGATAAATTAGTGGTAGA
1 GGATAAATTTGTGGTGGA
**
166444 GGATAAATTTAAGGTGGA
1 GGATAAATTTGTGGTGGA
*
166462 GGATATATTTGTGGTGGA
1 GGATAAATTTGTGGTGGA
166480 TAATAATCAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.35, T:0.31
Consensus pattern (18 bp):
GGATAAATTTGTGGTGGA
Found at i:168708 original size:16 final size:16
Alignment explanation
Indices: 168687--168719 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
168677 AAAATCATCG
168687 TAAATCATCATTATCA
1 TAAATCATCATTATCA
168703 TAAATCATCATTATCA
1 TAAATCATCATTATCA
168719 T
1 T
168720 TCAAATCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATCATCATTATCA
Found at i:171451 original size:27 final size:28
Alignment explanation
Indices: 171403--171485 Score: 114
Period size: 27 Copynumber: 3.0 Consensus size: 28
171393 ACAAAATCAT
*
171403 CACTTGTAAGATTTCAACCAATCTTTTG
1 CACTTGTAAGATTTCAAACAATCTTTTG
* * *
171431 CCCTTGTAA-AATTCAAACAATCATTTG
1 CACTTGTAAGATTTCAAACAATCTTTTG
171458 CACTTGTAAGATTTCAAACAATCATTTT
1 CACTTGTAAGATTTCAAACAATC-TTTT
171486 TAACCAAAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
27 23 0.50
28 20 0.43
29 3 0.07
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.37
Consensus pattern (28 bp):
CACTTGTAAGATTTCAAACAATCTTTTG
Found at i:173380 original size:16 final size:16
Alignment explanation
Indices: 173359--173391 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
173349 AAAATCATCG
173359 TAAATCATCATTATCA
1 TAAATCATCATTATCA
173375 TAAATCATCATTATCA
1 TAAATCATCATTATCA
173391 T
1 T
173392 TCAAATCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATCATCATTATCA
Found at i:187033 original size:19 final size:18
Alignment explanation
Indices: 187011--187104 Score: 63
Period size: 19 Copynumber: 5.2 Consensus size: 18
187001 GGGTTTGAGA
187011 TTTGGTTTGAGGTTTAGGG
1 TTTGG-TTGAGGTTTAGGG
*
187030 TTT-G--G-GGTTTGGGG
1 TTTGGTTGAGGTTTAGGG
* * *
187044 TTTAGTTTAAGATTTAGGG
1 TTT-GGTTGAGGTTTAGGG
187063 TTTGGTTGAGAGTTTAGGG
1 TTTGGTTGAG-GTTTAGGG
*
187082 TTTAAGGTT-AGGTTTACGG
1 TTT--GGTTGAGGTTTAGGG
187101 TTTG
1 TTTG
187105 AGGTTTAGGG
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
14 11 0.19
15 1 0.02
17 1 0.02
18 6 0.10
19 33 0.57
20 2 0.03
21 4 0.07
ACGTcount: A:0.15, C:0.01, G:0.38, T:0.46
Consensus pattern (18 bp):
TTTGGTTGAGGTTTAGGG
Found at i:187038 original size:33 final size:33
Alignment explanation
Indices: 187001--187067 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
186991 GTTGGTTTTA
* * *
187001 GGGTTTGAGATTTGGTTTGAGGTTTAGGGTTTG
1 GGGTTTGAGATTTAGTTTAAGATTTAGGGTTTG
* *
187034 GGGTTTGGGGTTTAGTTTAAGATTTAGGGTTTG
1 GGGTTTGAGATTTAGTTTAAGATTTAGGGTTTG
187067 G
1 G
187068 TTGAGAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.13, C:0.00, G:0.42, T:0.45
Consensus pattern (33 bp):
GGGTTTGAGATTTAGTTTAAGATTTAGGGTTTG
Found at i:187040 original size:26 final size:26
Alignment explanation
Indices: 186997--187129 Score: 85
Period size: 26 Copynumber: 4.8 Consensus size: 26
186987 TCATGTTGGT
* *
186997 TTTAGGGTTTGAGATTTGGTTTGAGG
1 TTTAGGGTTTGGGGTTTGGTTTGAGG
187023 TTTAGGGTTTGGGGTTTGGGGTTT-A-G
1 TTTAGGGTTTGGGGTTT--GGTTTGAGG
* * *
187049 TTTAAGATTTAGGGTTTGG-TTGAGAG
1 TTTAGGGTTTGGGGTTTGGTTTGAG-G
187075 TTTAGGGTTTAAGGTTAGGTTTACGGTTTGAGG
1 TTTAGGGTTT--GG---GGTTT--GGTTTGAGG
*
187108 TTTAGGGATTT-GGGTTTAGTTT
1 TTTAGGG-TTTGGGGTTTGGTTT
187130 TAAAGTTAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 28
0.69 0.07 0.23
Matches are distributed among these distances:
23 2 0.02
24 3 0.04
26 43 0.51
27 1 0.01
28 11 0.13
31 6 0.07
33 10 0.12
34 8 0.10
ACGTcount: A:0.16, C:0.01, G:0.38, T:0.46
Consensus pattern (26 bp):
TTTAGGGTTTGGGGTTTGGTTTGAGG
Found at i:188514 original size:1 final size:1
Alignment explanation
Indices: 188508--188533 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
188498 TTCCTATAAG
188508 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
188534 CCCTTTCTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:189155 original size:145 final size:139
Alignment explanation
Indices: 188937--189288 Score: 375
Period size: 145 Copynumber: 2.5 Consensus size: 139
188927 TTAAGGCATG
* * * * * * *
188937 TTAGTAATTTCACATCTTTTAAGGTGCGGTCAAGATTTTGAATGTACCAAAAATCATGAAATAAT
1 TTAGTAATTTCACA-CCTTTAAGGTGCGATCAAGGTTTTTAATGTATCAAAAATAATAAAATAAT
* * * **
189002 ATAAAACCATGATCTGAAATGTTTAGTAGAAAA-CTAATCTCGAAAAGGTCAAATTA-TGAAAAT
65 ATAAAACCATGATCTGAAACGTTT-GCA-AAAATC-AACCTC-AAAAAATCAAATTACT-AAAAT
*
189065 AACCCTAACAGTAAT
125 AACCCTAACAGCAAT
* *
189080 TTGGTAATTTCACACCTTTCAAAGAGTGCGATCAAGGTTTTTAATGTATCAAAAATTATAAAATA
1 TTAGTAATTTCACACCTTT--AAG-GTGCGATCAAGGTTTTTAATGTATCAAAAATAATAAAATA
* * *
189145 ATATAAAACCATGATCTGAAGCGTTTGCAAAAATCAACCTCAAAAAATTAAATTACTAAAATACC
63 ATATAAAACCATGATCTGAAACGTTTGCAAAAATCAACCTCAAAAAATCAAATTACTAAAATAAC
* *
189210 CCTAAGAGCATT
128 CCTAACAGCAAT
* * * * *
189222 TTAGTAATTTTACACCATTTGAGGTGCGATCAAGGTTTTTGACGTATCAAAAATAATAAAACAAT
1 TTAGTAATTTCACACC-TTTAAGGTGCGATCAAGGTTTTTAATGTATCAAAAATAATAAAATAAT
189287 AT
65 AT
189289 TTAAATGTGA
Statistics
Matches: 177, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
140 40 0.23
141 2 0.01
142 45 0.25
143 26 0.15
144 6 0.03
145 58 0.33
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (139 bp):
TTAGTAATTTCACACCTTTAAGGTGCGATCAAGGTTTTTAATGTATCAAAAATAATAAAATAATA
TAAAACCATGATCTGAAACGTTTGCAAAAATCAACCTCAAAAAATCAAATTACTAAAATAACCCT
AACAGCAAT
Found at i:189300 original size:140 final size:144
Alignment explanation
Indices: 188909--189377 Score: 352
Period size: 143 Copynumber: 3.3 Consensus size: 144
188899 TGAGAATGTC
* * * * * * * * * *
188909 AAATTATAAAATTACCTCTTAAG-GCATGTT-AGTAATTTCACATCTTTTAAGGTGCGGTCAAGA
1 AAATTATAAAAATACCCCTGAAGAGCATTTTGA-TAATTTTACACCATTTGAGGTGCGATCAAGG
* * * * * * * * *
188972 TTTTGAATGTACCAAAAATCATGAAATAATATAAAACCATGATCTGAAA-TGTTTAGTAGAAAA-
65 TTTTTAACGTATCAAAAATAATAAAACAATATAAAACCATGATCTAAAAGCGTTTA-CA-AAAAT
* * * *
189035 CTAATCTCGAAAAGGTC
128 CTAACCTCAAAAAAGTT
* * * * * * * *
189052 AAATTATGAAAATAACCCT-AACAGTAATTTGGTAATTTCACACC-TTTCAAAGAGTGCGATCAA
1 AAATTATAAAAATACCCCTGAAGAGCATTTTGATAATTTTACACCATTT--GAG-GTGCGATCAA
* * * * *
189115 GGTTTTTAATGTATCAAAAATTATAAAATAATATAAAACCATGATCT-GAAGCGTTTGCAAAAAT
63 GGTTTTTAACGTATCAAAAATAATAAAACAATATAAAACCATGATCTAAAAGCGTTTACAAAAAT
189179 C-AACCTCAAAAAA-TT
128 CTAACCTCAAAAAAGTT
189194 AAATTACT-AAAATACCCCT-AAGAGCATTTT-AGTAATTTTACACCATTTGAGGTGCGATCAAG
1 AAATTA-TAAAAATACCCCTGAAGAGCATTTTGA-TAATTTTACACCATTTGAGGTGCGATCAAG
* * ** ** *
189256 GTTTTTGACGTATCAAAAATAATAAAACAATATTTAAA-TGTGATCTAAAAGTTTTTACGAAAAT
64 GTTTTTAACGTATCAAAAATAATAAAACAATA-TAAAACCATGATCTAAAAGCGTTTACAAAAAT
**
189320 CTAATTTCAAAAAAGTT
128 CTAACCTCAAAAAAGTT
*
189337 AAATTATAAAAATACCCTTGAAGAGCATTTTGATAATTTTA
1 AAATTATAAAAATACCCCTGAAGAGCATTTTGATAATTTTA
189378 TCCTACCTGA
Statistics
Matches: 263, Mismatches: 46, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
140 45 0.17
141 19 0.07
142 52 0.20
143 65 0.25
144 26 0.10
145 56 0.21
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.32
Consensus pattern (144 bp):
AAATTATAAAAATACCCCTGAAGAGCATTTTGATAATTTTACACCATTTGAGGTGCGATCAAGGT
TTTTAACGTATCAAAAATAATAAAACAATATAAAACCATGATCTAAAAGCGTTTACAAAAATCTA
ACCTCAAAAAAGTT
Found at i:192228 original size:50 final size:50
Alignment explanation
Indices: 192141--192235 Score: 127
Period size: 50 Copynumber: 1.9 Consensus size: 50
192131 AGATCAAAAA
* **
192141 TGGTGTGAACATTTATATCTCAAAACCAATGACCAATGACTAACTCTAAG
1 TGGTGTGAACACTTATATCTCAAAACCAACAACCAATGACTAACTCTAAG
* * * *
192191 TGGTGTGAATACTTATATCTCAAGAGCAACAATCAATGACTAACT
1 TGGTGTGAACACTTATATCTCAAAACCAACAACCAATGACTAACT
192236 TTAGTTAACA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (50 bp):
TGGTGTGAACACTTATATCTCAAAACCAACAACCAATGACTAACTCTAAG
Found at i:192869 original size:16 final size:17
Alignment explanation
Indices: 192850--192881 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
192840 TTGAGGTATT
192850 AAAAAAT-AAAGATTAC
1 AAAAAATCAAAGATTAC
192866 AAAAAATCAAAGATTA
1 AAAAAATCAAAGATTA
192882 TTGAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAAAATCAAAGATTAC
Found at i:193273 original size:25 final size:25
Alignment explanation
Indices: 193245--193294 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
193235 ATATTAAAAA
193245 TCATGAATAAAATTATTTAATTATT
1 TCATGAATAAAATTATTTAATTATT
*** *
193270 TCATTTTTGAAATTATTTAATTATT
1 TCATGAATAAAATTATTTAATTATT
193295 ACACTAATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (25 bp):
TCATGAATAAAATTATTTAATTATT
Found at i:193724 original size:3 final size:3
Alignment explanation
Indices: 193716--193753 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
193706 CAGAATTCAC
193716 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
193754 ATTTTTACGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:193815 original size:2 final size:2
Alignment explanation
Indices: 193808--193836 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
193798 TTATAGAAAA
193808 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
193837 AACACAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:198871 original size:24 final size:24
Alignment explanation
Indices: 198844--198892 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
198834 TTGTTGCCAA
198844 AGTTGAATTGTACTTTGAGGCTTT
1 AGTTGAATTGTACTTTGAGGCTTT
198868 AGTTGAATTGTACTTTGAGGCTTT
1 AGTTGAATTGTACTTTGAGGCTTT
198892 A
1 A
198893 AGCTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.45
Consensus pattern (24 bp):
AGTTGAATTGTACTTTGAGGCTTT
Found at i:198900 original size:24 final size:24
Alignment explanation
Indices: 198847--198900 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
198837 TTGCCAAAGT
*
198847 TGAATTGTACTTTGAGGCTTTAGT
1 TGAATTGTACTTTGAGGCTTTAGC
198871 TGAATTGTACTTTGAGGCTTTAAGC
1 TGAATTGTACTTTGAGGCTTT-AGC
198896 T-AATT
1 TGAATT
198901 TTGGATCCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 25 0.89
25 3 0.11
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.44
Consensus pattern (24 bp):
TGAATTGTACTTTGAGGCTTTAGC
Found at i:205283 original size:19 final size:19
Alignment explanation
Indices: 205247--205304 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
205237 TTATTAAATT
** *
205247 TTTTATAATTTTAAATTTA
1 TTTTATAATCATATATTTA
* * *
205266 TTTTTTAATTATTTATTTA
1 TTTTATAATCATATATTTA
*
205285 ATTTATAATCATATATTTA
1 TTTTATAATCATATATTTA
205304 T
1 T
205305 AAATGCTAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATAATCATATATTTA
Found at i:208359 original size:34 final size:33
Alignment explanation
Indices: 208316--208391 Score: 89
Period size: 34 Copynumber: 2.3 Consensus size: 33
208306 GTAATATTTT
*
208316 TAAAATTATTATAGTGATTCAATAATTATAATGA
1 TAAAATTATTAAAGTGATTCAATAATTATAAT-A
* ** *
208350 TAAAATTATTAAAGTTATTTGATTATTATAATA
1 TAAAATTATTAAAGTGATTCAATAATTATAATA
*
208383 TTAAATTAT
1 TAAAATTAT
208392 CATATTTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 9 0.25
34 27 0.75
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (33 bp):
TAAAATTATTAAAGTGATTCAATAATTATAATA
Found at i:208360 original size:17 final size:17
Alignment explanation
Indices: 208316--208360 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
208306 GTAATATTTT
*
208316 TAAAATTATTATAGTGA
1 TAAAATTATTATAATGA
** *
208333 TTCAATAATTATAATGA
1 TAAAATTATTATAATGA
208350 TAAAATTATTA
1 TAAAATTATTA
208361 AAGTTATTTG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (17 bp):
TAAAATTATTATAATGA
Found at i:209662 original size:2 final size:2
Alignment explanation
Indices: 209657--209693 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
209647 AGTGTGTGTG
209657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
209694 TTGTTAATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:213687 original size:21 final size:20
Alignment explanation
Indices: 213620--213687 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
213610 TTGAAATTAC
213620 TTTTTAT-TTATAATAATAA
1 TTTTTATGTTATAATAATAA
* *
213639 TTTTTTACGTTACTAAT-TTAA
1 -TTTTTATGTTA-TAATAATAA
213660 TTATTTATGTTATAATAATATA
1 TT-TTTATGTTATAATAATA-A
213682 TTTTTA
1 TTTTTA
213688 CGTTTGTTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
20 12 0.31
21 20 0.51
22 7 0.18
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTTATGTTATAATAATAA
Found at i:214351 original size:20 final size:20
Alignment explanation
Indices: 214292--214352 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
214282 TATTTTTATC
* *
214292 TTTTTATTT-TAACACTTATT
1 TTTTTATTTATAATAC-TAAT
*
214312 TTTTTATTTAGAAT--T-A-
1 TTTTTATTTATAATACTAAT
214328 TTTTTATTTATAATACTAAT
1 TTTTTATTTATAATACTAAT
214348 TTTTT
1 TTTTT
214353 TATGTTACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
16 13 0.41
18 2 0.06
19 1 0.03
20 14 0.44
21 2 0.06
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTATTTATAATACTAAT
Found at i:216333 original size:24 final size:25
Alignment explanation
Indices: 216306--216358 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
216296 TTGCATTAAC
216306 TTTTATTT-TTTGGT-TTAAAATTAT
1 TTTTATTTATTT-GTATTAAAATTAT
* *
216330 TTTT-TTTATTTGTATTGATATTAT
1 TTTTATTTATTTGTATTAAAATTAT
216354 TTTTA
1 TTTTA
216359 CAATACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.70
Consensus pattern (25 bp):
TTTTATTTATTTGTATTAAAATTAT
Done.