Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 32 of 100
Found at i:5951322 original size:19 final size:19
Alignment explanation
Indices: 5951298--5951335 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
5951288 ATTTGTTTTC
5951298 TCTTTCCTTTTATTTTTAA
1 TCTTTCCTTTTATTTTTAA
*
5951317 TCTTTCTTTTTATTTTTAA
1 TCTTTCCTTTTATTTTTAA
5951336 ACAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (19 bp):
TCTTTCCTTTTATTTTTAA
Found at i:5952647 original size:556 final size:551
Alignment explanation
Indices: 5951956--5953916 Score: 1969
Period size: 556 Copynumber: 3.5 Consensus size: 551
5951946 TTTTTTTATC
* * * * * *
5951956 TTTTA-TCTTTTATCTTTCTTTCTTTCCATTTGTAGATGAAATTAATATCTAATTGAATGTAAAT
1 TTTTATTCCTTTATCTTTCTTTCTTTCCTTTTCTAAATGAAATTAATATCTAATTAAATATAAAT
* ** * *
5952020 CCTATATGTTTAATAAAGAAAACTGGCTATCTCAATTACCTTTATCTCTTTCCTAAGCAATGGGC
66 CCTATATGTTTAATAAAGAAAACTGACTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGGGT
* * **
5952085 ATGTAGGATGCATG-AGCTGTTTTTGCCCATGAAGAAAGCTTCAAATATTCATAACTTTTCCTTT
131 ATGTAAGATGCA-GAATCTGTTTTTGCCCATGAAGAAAGCTTCAAATCCTCATAACTTTTCCTTT
* *
5952149 TCTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACATATT-CTTATGTAATTCTTTGCATAAAC
195 TCTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACTTATTCCTTATATAATTCTTTGCATAAAC
* *
5952213 TAATCATAAAGGATAGTATAAGAAAAAAAAGGTAAATTCCATCAATTTTTTTGATGAAGTACGTC
260 TAATCATAAAGGATAGTAAAAGAAAAAAAA-GTAAATTCCATCAATTTTTTT-ATGAAGTACGCC
* *
5952278 GCAATATGAAAATAGATAAAAAGGTTATAGGTGCAAGAATTTGAATATCAAATTTATTGAAGTTT
323 GCAATCTGAAAATAGATAAAAAGGTTGTAGGTGCAAGAATTTGAAT-TCAAATTTATTGAAGTTT
* *
5952343 TAAGATTTATTTTCTCTTTCCTTTTATTTTTAA-GAAATAAATAAAAAATAGTAAAAAACTAAAA
387 TAGGATTTGTTTTCTCTTTCCTTTTATTTTTAACGAAA-AAATAAAAAATAGTAAAAAACTAAAA
5952407 CGTCATATGAGTATGTCATTTTACTTAATTCGAATAATCTTTCAGATATTTTGTTTTCCTAAATA
451 CGTCATATGAGTATGTCATTTTACTTAATTCG-ATAAT-TTTCAGA-ATTTTGTTTT-CTAAATA
*
5952472 TCAAACTAATTATTTTTTATTTTGATTTAGAAGTGAAT-TT
512 TCAAATTAATTATTTTTTATTTTGATTT-GAAGTGAATGTT
* * * *
5952512 TTTTATGCTTTTATCTTTATTTCTTTCCTTTTCTAAATGGAATTAATATCTAATTAAATATAAAT
1 TTTTATTCCTTTATCTTTCTTTCTTTCCTTTTCTAAATGAAATTAATATCTAATTAAATATAAAT
* * *
5952577 CCCATTTGTTTAATAAA-AAAA-TCGACTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGTG
66 CCTATATGTTTAATAAAGAAAACT-GACTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGGG
* * * * *
5952640 TATGTAGGATGTAGAATCTGTTTTTGCCCATGAGGAAAGCTTCAGATCCTCAGAACTTTTCCTTT
130 TATGTAAGATGCAGAATCTGTTTTTGCCCATGAAGAAAGCTTCAAATCCTCATAACTTTTCCTTT
* * * * * * *
5952705 TCTCTTATAAAGAGAGAAGAACATCTTTGATTTTACTTATTCCTT-TATAATTCATTACATAAAC
195 TCTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACTTATTCCTTATATAATTCTTTGCATAAAC
* * * *
5952769 TAATCATAAA-GAAAGGTAAAAGAAAAAAAAAGTAGATTCTATCAA-TTTTTTATGAAGTACACC
260 TAATCATAAAGGATA-GTAAAAG-AAAAAAAAGTAAATTCCATCAATTTTTTTATGAAGTACGCC
* * *
5952832 GCAATCTGAAAATATATAAATAGGTTGTAGGTGTAAGAATTTGAATCTCAAATTTATTGAAGTTT
323 GCAATCTGAAAATAGATAAAAAGGTTGTAGGTGCAAGAATTTGAAT-TCAAATTTATTGAAGTTT
* * * *
5952897 TAGGATTTGTTTTCTCTCTCC-TTTATTTTTAAGCGAAAAATTAAAAAAAATAATAAAAATGCTA
387 TAGGATTTGTTTTCTCTTTCCTTTTATTTTTAA-CGAAAAA--ATAAAAAATAGTAAAAA-ACTA
* ** *
5952961 AAACGTCTTATGAGTATGTCATTTTACTTAATTCGGATAATATTTTGGAAATTTTGTTTTTTCAA
448 AAACGTCATATGAGTATGTCATTTTACTTAATTC-GATAAT-TTTCAG-AATTTTGTTTTCT-AA
* *
5953026 ATATCAAATTAATTAATTATTAATTAATTTTTATTTTGATATTGAAATGATAT
509 ATATCAAATTAATT-ATT-TT--TT-ATTTTGA-TTTGA-AGTG-AATG-T-T
* * *
5953079 GTTTTTTTCCTTTATCTTTCTTGCTTTCCTTTTGTAAATGAAATTAATATCTAATTAAATATCAA
1 -TTTTATTCCTTTATCTTTCTTTCTTTCCTTTTCTAAATGAAATTAATATCTAATTAAATAT-AA
* * * * * * * *
5953144 A-CCTATACGTTAAATAAAGAGAACTGACTTGATCAATTACATTTATCTCTTTCGGAAGCAATGA
64 ATCCTATATGTTTAATAAAGAAAACTGACTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGG
* * * ** * * *
5953208 ATATGTAAGATGCAGAATTTGTTTTTGTCCATGAAGAAAGCTTCAGGTTCTCATAACTTTTATCA
129 GTATGTAAGATGCAGAATCTGTTTTTGCCCATGAAGAAAGCTTCAAATCCTCATAACTTTT-CCT
* * * * *
5953273 TTTCTCTTATAAGAGGAAAAGAACAACCTTGGTTTTACTTATTCCAT-TAGAATTTTTTGCATAA
193 TTTCTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACTTATTCCTTATATAATTCTTTGCATAA
* * * * * **
5953337 ACTGATCGTAAAGCATGGTAAAAGGAAAAAAAAG-AAAGGTGGATTCAATCATTTTTTATGAAGT
258 ACTAATCATAAAGGATAGTAAAA-GAAAAAAAAGTAAA-TTCCA-TCAAT--TTTTTTATGAAGT
* * * * * * * *
5953401 ATGCCACAATCT-AAAATTGGGTAAAAATGTTGCAAGTACAAGAATTTGAATTCTAAATTTATTG
318 ACGCCGCAATCTGAAAA-TAGATAAAAAGGTTGTAGGTGCAAGAATTTGAATTC-AAATTTATTG
* * * * * *
5953465 AAGTTTTAGGATTTGTTTTTTCTTCCCTTTCATTTTTAAGCGAAAAATTCAAAAAAAAGTTGAAA
381 AAGTTTTAGGATTTGTTTTCTCTTTCCTTTTATTTTTAA-CGAAAAAAT-AAAAAATAG-TAAAA
* *** * * * * * * **
5953530 AACTAAAACGTCAAATGAGTA--T-ATTTTGGATATTTTGCT--TTTCCA-AATATCG--AACTA
443 AACTAAAACGTCATATGAGTATGTCATTTTACTTAATTCGATAATTTTCAGAATTTTGTTTTCTA
* * ** * * *
5953587 ATTGTTTATTTATTTATTTATTATTTTGATTTGCAAGTGATATGTT
508 AATATCAAATTAATTATTTTTTATTTTGATTTG-AAGTGA-ATGTT
* * *
5953633 TTTTTTTCCTTTATCTTTCTTTCTTTCATTTTCTAGATGAAATTAATATCTAATTAAATATAAAT
1 TTTTATTCCTTTATCTTTCTTTCTTTCCTTTTCTAAATGAAATTAATATCTAATTAAATATAAAT
* * * * * * * *
5953698 CCTACATGTTTAATAAAGAAAAC-CAGCTCGTTGAATTACCCTTATCTCTATCATAAGTAATGGG
66 CCTATATGTTTAATAAAGAAAACTGA-CTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGGG
* * * * * * *
5953762 TATTTAAGATGTAGAATATGTTTTTGCCTATGAGGAAAGTTTCAAATCCTCGTAACTTTTCCTTT
130 TATGTAAGATGCAGAATCTGTTTTTGCCCATGAAGAAAGCTTCAAATCCTCATAACTTTTCCTTT
* * * * *
5953827 TCTCTTATAAGGGGAAAAGAACAATTTTGGTTTTACTTCTTCC-TCTATAATTCTTTGCATGAAT
195 TCTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACTTATTCCTTATATAATTCTTTGCATAAAC
5953891 TAATCATAAAGGAT-GATAAAA-AAAAA
260 TAATCATAAAGGATAG-TAAAAGAAAAA
5953917 GAGTGGTATT
Statistics
Matches: 1159, Mismatches: 198, Indels: 102
0.79 0.14 0.07
Matches are distributed among these distances:
550 5 0.00
551 2 0.00
552 77 0.07
553 163 0.14
554 90 0.08
555 17 0.01
556 204 0.18
557 154 0.13
558 7 0.01
559 2 0.00
560 1 0.00
561 5 0.00
562 18 0.02
563 7 0.01
564 3 0.00
565 5 0.00
566 1 0.00
567 3 0.00
568 68 0.06
569 94 0.08
570 83 0.07
571 15 0.01
572 1 0.00
573 6 0.01
574 105 0.09
575 23 0.02
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (551 bp):
TTTTATTCCTTTATCTTTCTTTCTTTCCTTTTCTAAATGAAATTAATATCTAATTAAATATAAAT
CCTATATGTTTAATAAAGAAAACTGACTCGCTCAATTACCTTTATCTCTTTCGTAAGCAATGGGT
ATGTAAGATGCAGAATCTGTTTTTGCCCATGAAGAAAGCTTCAAATCCTCATAACTTTTCCTTTT
CTCTTATAAGGGGAAAAGAACAACTTTGGTTTTACTTATTCCTTATATAATTCTTTGCATAAACT
AATCATAAAGGATAGTAAAAGAAAAAAAAGTAAATTCCATCAATTTTTTTATGAAGTACGCCGCA
ATCTGAAAATAGATAAAAAGGTTGTAGGTGCAAGAATTTGAATTCAAATTTATTGAAGTTTTAGG
ATTTGTTTTCTCTTTCCTTTTATTTTTAACGAAAAAATAAAAAATAGTAAAAAACTAAAACGTCA
TATGAGTATGTCATTTTACTTAATTCGATAATTTTCAGAATTTTGTTTTCTAAATATCAAATTAA
TTATTTTTTATTTTGATTTGAAGTGAATGTT
Found at i:5954562 original size:26 final size:26
Alignment explanation
Indices: 5954501--5954565 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
5954491 GATAAACTTT
* *
5954501 AATAAAAATTTATAAGCCTTAAATAA
1 AATAAAATTTTATAAACCTTAAATAA
*
5954527 AATAAAATTTTATAAACTTTAAATAA
1 AATAAAATTTTATAAACCTTAAATAA
*
5954553 AATAATATTTTAT
1 AATAAAATTTTAT
5954566 TTATTGTACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (26 bp):
AATAAAATTTTATAAACCTTAAATAA
Found at i:5957365 original size:13 final size:14
Alignment explanation
Indices: 5957349--5957383 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
5957339 AAGGTTTTGC
5957349 TTTAGGGTTTCAA-
1 TTTAGGGTTTCAAT
*
5957362 TTTAGGGTTTTAAT
1 TTTAGGGTTTCAAT
5957376 TTTAGGGT
1 TTTAGGGT
5957384 ATTACGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.20, C:0.03, G:0.26, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTCAAT
Found at i:5957600 original size:19 final size:19
Alignment explanation
Indices: 5957578--5957615 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
5957568 TCTTTTTTTA
*
5957578 TTATTGTTTATTAATATTT
1 TTATTATTTATTAATATTT
*
5957597 TTATTATTTATTACTATTT
1 TTATTATTTATTAATATTT
5957616 AACAATTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
TTATTATTTATTAATATTT
Found at i:5957616 original size:10 final size:10
Alignment explanation
Indices: 5957574--5957616 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
5957564 AAAATCTTTT
*
5957574 TTTATTATTG
1 TTTATTATTA
*
5957584 TTTATTAATA
1 TTTATTATTA
5957594 TTT-TTATTA
1 TTTATTATTA
*
5957603 TTTATTACTA
1 TTTATTATTA
5957613 TTTA
1 TTTA
5957617 ACAATTCCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 8 0.29
10 20 0.71
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATTATTA
Found at i:5957880 original size:3 final size:3
Alignment explanation
Indices: 5957866--5957900 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
5957856 TATAAGCTGA
*
5957866 AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
5957901 AGGCTCATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:5959398 original size:19 final size:18
Alignment explanation
Indices: 5959369--5959404 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
5959359 AACCCCTATT
5959369 TTTGTTTTTTTTTTTGTC
1 TTTGTTTTTTTTTTTGTC
5959387 TTTGTGTTTTTTTTTTGT
1 TTTGT-TTTTTTTTTTGT
5959405 GTTTTTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (18 bp):
TTTGTTTTTTTTTTTGTC
Found at i:5959410 original size:13 final size:13
Alignment explanation
Indices: 5959387--5959412 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5959377 TTTTTTTGTC
5959387 TTTGTGTTTTTTT
1 TTTGTGTTTTTTT
5959400 TTTGTGTTTTTTT
1 TTTGTGTTTTTTT
5959413 GTTAAAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTGTGTTTTTTT
Found at i:5959509 original size:35 final size:36
Alignment explanation
Indices: 5959420--5959540 Score: 127
Period size: 35 Copynumber: 3.4 Consensus size: 36
5959410 TTTGTTAAAG
* ** *
5959420 AATAAAGAACAATTGGGATAACATCGTAAGTTTAGAA
1 AATAAAGAACAATTAGGATAACATCACAAGTTAAG-A
* *
5959457 AATAAAGAACGACTAGGATAACATCACAAG-TAAGA
1 AATAAAGAACAATTAGGATAACATCACAAGTTAAGA
* * *
5959492 AATAACGAACAATTAGGACAATATCACAAGTTAAGA
1 AATAAAGAACAATTAGGATAACATCACAAGTTAAGA
* *
5959528 AAGAAAGGACAAT
1 AATAAAGAACAAT
5959541 CGAGACAATA
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
35 26 0.38
36 18 0.26
37 25 0.36
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.18
Consensus pattern (36 bp):
AATAAAGAACAATTAGGATAACATCACAAGTTAAGA
Found at i:5959661 original size:35 final size:31
Alignment explanation
Indices: 5959622--5959741 Score: 88
Period size: 35 Copynumber: 3.7 Consensus size: 31
5959612 AAGACAACTT
5959622 CACAAGTCAAAAATAATGAATGACTGAGATAACAC
1 CACAAGT-AAAAATAA--AATGA-TGAGATAACAC
*
5959657 CACAAGT-AAAA-AAAAT--TGAGATAACAT
1 CACAAGTAAAAATAAAATGATGAGATAACAC
* *
5959684 TACAAGTAAAAAATAACAAATGATTGAAATAACAC
1 CACAAGT-AAAAAT-A-AAATGA-TGAGATAACAC
*
5959719 AACAAGTTAAAAATAAAA-GATGA
1 CACAAG-TAAAAATAAAATGATGA
5959742 CCAAGACAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 22
0.72 0.05 0.22
Matches are distributed among these distances:
27 16 0.23
29 4 0.06
30 3 0.04
31 4 0.06
32 8 0.11
33 7 0.10
34 1 0.01
35 27 0.38
36 1 0.01
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (31 bp):
CACAAGTAAAAATAAAATGATGAGATAACAC
Found at i:5959853 original size:33 final size:34
Alignment explanation
Indices: 5959816--5959890 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 34
5959806 GAATAACTAG
5959816 GACAACA-C-AAGTCAAAAAATAAAAAATGATTGA
1 GACAACACCAAAGT-AAAAAATAAAAAATGATTGA
**
5959849 GACAACACCATAAGTAAAAAATAACGAATGATTGA
1 GACAACACCA-AAGTAAAAAATAAAAAATGATTGA
*
5959884 GATAACA
1 GACAACA
5959891 AATAATGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 7 0.19
34 1 0.03
35 24 0.67
36 4 0.11
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.16
Consensus pattern (34 bp):
GACAACACCAAAGTAAAAAATAAAAAATGATTGA
Found at i:5959903 original size:35 final size:35
Alignment explanation
Indices: 5959829--5959903 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
5959819 AACACAAGTC
* *
5959829 AAAAAATAAAAAATGATTGAGACAACACCATAAGT
1 AAAAAATAAAAAATGATTGAGACAACACAATAAGA
** *
5959864 AAAAAATAACGAATGATTGAGATAACA-AATAATGA
1 AAAAAATAAAAAATGATTGAGACAACACAATAA-GA
5959899 AAAAA
1 AAAAA
5959904 GAAATTGCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.63, C:0.08, G:0.12, T:0.17
Consensus pattern (35 bp):
AAAAAATAAAAAATGATTGAGACAACACAATAAGA
Found at i:5960064 original size:22 final size:23
Alignment explanation
Indices: 5960030--5960075 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
5960020 AGTTTATGTG
*
5960030 TAAATTATAAATTT-TATTTTTT
1 TAAACTATAAATTTGTATTTTTT
*
5960052 TAAACTATCAATTTGTATTTTTT
1 TAAACTATAAATTTGTATTTTTT
5960075 T
1 T
5960076 TCTCAAGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (23 bp):
TAAACTATAAATTTGTATTTTTT
Found at i:5961446 original size:34 final size:34
Alignment explanation
Indices: 5961408--5961510 Score: 93
Period size: 34 Copynumber: 3.0 Consensus size: 34
5961398 TGTTTGAATC
*
5961408 TAGAAAATGCTATTA-ATATAGCAACATTTGTATT
1 TAGAAAATGCTATTATAT-TAACAACATTTGTATT
* *
5961442 TAGAAAACG-TCGTTATATTAACAACATTTGTATT
1 TAGAAAATGCT-ATTATATTAACAACATTTGTATT
* * * ** *
5961476 TAAAAAATGCTACTATTTTAATGACATTTTTATT
1 TAGAAAATGCTATTATATTAACAACATTTGTATT
5961510 T
1 T
5961511 TTGAAATGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
33 1 0.02
34 51 0.93
35 3 0.05
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (34 bp):
TAGAAAATGCTATTATATTAACAACATTTGTATT
Found at i:5962387 original size:11 final size:11
Alignment explanation
Indices: 5962371--5962400 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
5962361 AATCCCATAA
5962371 GAGATTTGTTT
1 GAGATTTGTTT
5962382 GAGA-TTGTTT
1 GAGATTTGTTT
5962392 GAGATTTGT
1 GAGATTTGT
5962401 CAGATATTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:5962409 original size:21 final size:21
Alignment explanation
Indices: 5962371--5962414 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
5962361 AATCCCATAA
** *
5962371 GAGATTTGTTTGAGATTGTTT
1 GAGATTTGTCAGAGATTGCTT
*
5962392 GAGATTTGTCAGATATTGCTT
1 GAGATTTGTCAGAGATTGCTT
5962413 GA
1 GA
5962415 TGGACAAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.27, T:0.45
Consensus pattern (21 bp):
GAGATTTGTCAGAGATTGCTT
Found at i:5962513 original size:52 final size:52
Alignment explanation
Indices: 5962425--5962581 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
5962415 TGGACAAGAA
* * *
5962425 GACTTGCAAAAGAAGAATT-T-CAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAG-GAAAGA-GATTCTTAATAGGCAAGTTT
5962477 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
* * * * *
5962529 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAAT-GGCCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGG-CAAGTTT
5962581 G
1 G
5962582 TATGGTTATA
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 82 0.87
53 7 0.07
54 3 0.03
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:5963459 original size:11 final size:11
Alignment explanation
Indices: 5963443--5963484 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
5963433 AATCCCATAA
5963443 GAGATTTGTTT
1 GAGATTTGTTT
*
5963454 GAGATTTGTTA
1 GAGATTTGTTT
*
5963465 GAGATTTATTT
1 GAGATTTGTTT
*
5963476 AAGATTTGT
1 GAGATTTGT
5963485 CAGATATTGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:5963470 original size:22 final size:22
Alignment explanation
Indices: 5963442--5963484 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
5963432 AAATCCCATA
* *
5963442 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTATTTAAGATTTGTT
5963464 AGAGATTTATTTAAGATTTGT
1 AGAGATTTATTTAAGATTTGT
5963485 CAGATATTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (22 bp):
AGAGATTTATTTAAGATTTGTT
Found at i:5963597 original size:52 final size:52
Alignment explanation
Indices: 5963519--5963654 Score: 193
Period size: 52 Copynumber: 2.6 Consensus size: 52
5963509 GACTTGCAAA
* *
5963519 AGAAGAATTTCAAGA-GAAAGAAGATTCTTAATAGGTAAGTTTGAATTACAAG
1 AGAAGAATTTTAAGAGGAAAG-AGATTCTTAATAGGCAAGTTTGAATTACAAG
* * *
5963571 AGAAGAATTTTAAAAGGAAAGAGATTCTTAATAGGCAAGTTTGACTTACAGG
1 AGAAGAATTTTAAGAGGAAAGAGATTCTTAATAGGCAAGTTTGAATTACAAG
* *
5963623 AGAAGAATTCTAAGAGGAGAGAGATTCTTAAT
1 AGAAGAATTTTAAGAGGAAAGAGATTCTTAAT
5963655 GGTCAAATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
52 70 0.93
53 5 0.07
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (52 bp):
AGAAGAATTTTAAGAGGAAAGAGATTCTTAATAGGCAAGTTTGAATTACAAG
Found at i:5964187 original size:31 final size:31
Alignment explanation
Indices: 5964149--5964230 Score: 128
Period size: 31 Copynumber: 2.6 Consensus size: 31
5964139 AGGTTTTTAG
* *
5964149 CCCAACAAATGGTATCAGAGCTGTGGTGTTT
1 CCCAACAAATGGTATCAGAGCTGTGGTATTC
5964180 CCCAACAAATGGTATCAGAGCTGTGGTATTC
1 CCCAACAAATGGTATCAGAGCTGTGGTATTC
* *
5964211 CCCAACAAGTGTTATCAGAG
1 CCCAACAAATGGTATCAGAG
5964231 TTGAAGGTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (31 bp):
CCCAACAAATGGTATCAGAGCTGTGGTATTC
Found at i:5964261 original size:25 final size:24
Alignment explanation
Indices: 5964227--5964308 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 24
5964217 AAGTGTTATC
* *
5964227 AGAGTTGAAGGTTCAAAACGTGAGA
1 AGAGTTGAAGGTTCAAGATGTGA-A
*
5964252 AGAGTTGAAGATTCAAGATGTGAAA
1 AGAGTTGAAGGTTCAAGATGTG-AA
** *
5964277 AGAGCAGAAGGTTCGAGATGTGAA
1 AGAGTTGAAGGTTCAAGATGTGAA
5964301 AGAGTTGA
1 AGAGTTGA
5964309 CAATTCGAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
24 8 0.17
25 38 0.81
26 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.33, T:0.21
Consensus pattern (24 bp):
AGAGTTGAAGGTTCAAGATGTGAA
Found at i:5964585 original size:11 final size:11
Alignment explanation
Indices: 5964569--5964597 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
5964559 AATCTCATAA
5964569 GAGATTTGTTT
1 GAGATTTGTTT
5964580 GAGATTTGTTT
1 GAGATTTGTTT
5964591 GAGATTT
1 GAGATTT
5964598 ATCAGATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:5964717 original size:52 final size:52
Alignment explanation
Indices: 5964636--5964769 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
5964626 CTTGCAAAAG
* *
5964636 AAGAATTCCAAGA-GAAAGAGGATTCTTAATAGGTAAGTTTGAATTACAAGAA
1 AAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTTGAATTACAAGAA
* * * * *
5964688 AAGAATTCTAAAAGGAAAGAGATTTTTAATAGGCAAGTTTGACTTACAGGAG
1 AAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTTGAATTACAAGAA
5964740 AAGAATTCTAAGAGGAGAA-AGATTCTTAAT
1 AAGAATTCTAAGAGGA-AAGAGATTCTTAAT
5964770 GGCCAAATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
52 63 0.89
53 8 0.11
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.26
Consensus pattern (52 bp):
AAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTTGAATTACAAGAA
Found at i:5971452 original size:3 final size:3
Alignment explanation
Indices: 5971446--5971542 Score: 135
Period size: 3 Copynumber: 32.7 Consensus size: 3
5971436 AAGATAAAAG
* *
5971446 TAA TAA TAA TAA TAA TAA TAA TAA CAA -AA TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
5971493 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AGG TAA TAA TAA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
5971538 TAA TA
1 TAA TA
5971543 TACATAAAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
2 3 0.04
3 80 0.95
4 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:5971941 original size:56 final size:55
Alignment explanation
Indices: 5971756--5972002 Score: 190
Period size: 55 Copynumber: 4.5 Consensus size: 55
5971746 AAACAACCGA
* * * * *
5971756 GATTGAACATAAGTCA-AAAAAATGATCTAGATCAAGCTGAGATCGAACG-ATCGG
1 GATTGAACACAAGTTAGAAAAAATGATCTAGATCAAGCCGAAATCAAACGAAT-GG
* * *
5971810 GATTAAACTGCAA-TTCA-AAAAAATAATCTAGATCGAA-CC-AAGATCAAACGAATGG
1 GATTGAAC-ACAAGTT-AGAAAAAATGATCTAGATC-AAGCCGAA-ATCAAACGAATGG
* * ** *
5971865 GATTGAACACAAGTTTGAAAAAATGATCTGGATCAAGTTGAAATCAAACGATTGG
1 GATTGAACACAAGTTAGAAAAAATGATCTAGATCAAGCCGAAATCAAACGAATGG
* *
5971920 GATTGAATCACAAGTTAGAAAAACA--ATCTAGATCAAGCCGAGATCAAAC-AACTAG
1 GATTGAA-CACAAGTTAGAAAAA-ATGATCTAGATCAAGCCGAAATCAAACGAA-TGG
*
5971975 CATTGAACCACAAGTCTA-AAAAAATGAT
1 GATTGAA-CACAAGT-TAGAAAAAATGAT
5972003 TTGAATTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
54 16 0.10
55 112 0.73
56 24 0.16
57 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (55 bp):
GATTGAACACAAGTTAGAAAAAATGATCTAGATCAAGCCGAAATCAAACGAATGG
Found at i:5971942 original size:110 final size:111
Alignment explanation
Indices: 5971741--5972002 Score: 279
Period size: 110 Copynumber: 2.4 Consensus size: 111
5971731 GACCGAGTTG
* * * *
5971741 AGATCAAACAACCGAG-ATTGAA-CATAAGTC-AAAAAAATGATCTAGATCAAGCTGAGATCGAA
1 AGATCAAACAA-CTAGCATTGAACCACAAGTCTAAAAAAATGATCTAGATCAAGCTGAAATCAAA
* *
5971803 CGATCGGGATTAAACTGCAATTCAAAAAAATAATCTAGATCGAA-CCA
65 CGATCGGGATTAAACTACAATTCAAAAAAACAATCTAGATC-AAGCCA
* * * * * *
5971850 AGATCAAACGAA-TGGGATTGAA-CACAAGTTTGAAAAAATGATCTGGATCAAGTTGAAATCAAA
1 AGATCAAAC-AACTAGCATTGAACCACAAGTCTAAAAAAATGATCTAGATCAAGCTGAAATCAAA
* * * *
5971913 CGATTGGGATTGAA-TCACAAGTT-AGAAAAACAATCTAGATCAAGCCG
65 CGATCGGGATTAAACT-ACAA-TTCAAAAAAACAATCTAGATCAAGCCA
5971960 AGATCAAACAACTAGCATTGAACCACAAGTCTAAAAAAATGAT
1 AGATCAAACAACTAGCATTGAACCACAAGTCTAAAAAAATGAT
5972003 TTGAATTGAG
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
108 1 0.01
109 26 0.21
110 79 0.63
111 20 0.16
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (111 bp):
AGATCAAACAACTAGCATTGAACCACAAGTCTAAAAAAATGATCTAGATCAAGCTGAAATCAAAC
GATCGGGATTAAACTACAATTCAAAAAAACAATCTAGATCAAGCCA
Found at i:5972035 original size:111 final size:110
Alignment explanation
Indices: 5971757--5972037 Score: 259
Period size: 110 Copynumber: 2.6 Consensus size: 110
5971747 AACAACCGAG
* * * * * * *
5971757 ATTGAACATAAGTC-AAAAAAATGATCT-AGATCAAGCTGAGATCGAACGATCGGGATT-AAACT
1 ATTGAACACAAGTCTAAAAAAATGATCTGA-ATCAAGTTGAAATCAAACAATCGAGATTGAATC-
* * * * *
5971819 GCAA-TTCAAAAAAATAATCTAGATCGAACCAAGATCAAACGAATGGG
64 ACAAGTT-AGAAAAACAATCTAGATCGAACCAAGATCAAACGAATAGC
* * * * * *
5971866 ATTGAACACAAGTTTGAAAAAATGATCTGGATCAAGTTGAAATCAAACGATTGGGATTGAATCAC
1 ATTGAACACAAGTCTAAAAAAATGATCTGAATCAAGTTGAAATCAAACAATCGAGATTGAATCAC
*
5971931 AAGTTAGAAAAACAATCTAGATC-AAGCCGAGATCAAAC-AACTAGC
66 AAGTTAGAAAAACAATCTAGATCGAA-CCAAGATCAAACGAA-TAGC
* ** *
5971976 ATTGAACCACAAGTCTAAAAAAATGATTTGAATTGAGTTGAGATCAAACAATCGAGATTGAA
1 ATTGAA-CACAAGTCTAAAAAAATGATCTGAATCAAGTTGAAATCAAACAATCGAGATTGAA
5972038 CTGCAATTCT
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
109 16 0.11
110 74 0.53
111 50 0.36
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (110 bp):
ATTGAACACAAGTCTAAAAAAATGATCTGAATCAAGTTGAAATCAAACAATCGAGATTGAATCAC
AAGTTAGAAAAACAATCTAGATCGAACCAAGATCAAACGAATAGC
Found at i:5976303 original size:20 final size:20
Alignment explanation
Indices: 5976278--5976326 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
5976268 AATGCTGAGC
*
5976278 CCAAGCATATCTTGGTAGGA
1 CCAAGCAAATCTTGGTAGGA
5976298 CCAAGCAAATCTTGGTAGGA
1 CCAAGCAAATCTTGGTAGGA
5976318 CCAAGCAAA
1 CCAAGCAAA
5976327 CACATTTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
CCAAGCAAATCTTGGTAGGA
Found at i:5983926 original size:6 final size:6
Alignment explanation
Indices: 5983915--5983965 Score: 61
Period size: 6 Copynumber: 8.3 Consensus size: 6
5983905 ATAAATATAC
5983915 TAAAAA TAAAAA TAAAAA GCTTAAAAA TAAAAA T-AAAA T-AAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA ---TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
5983964 TA
1 TA
5983966 TGCAATTGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.24
6 25 0.61
9 6 0.15
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:5983929 original size:21 final size:20
Alignment explanation
Indices: 5983903--5983965 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
5983893 AAAATAAAAT
5983903 AAATAAATATACTAAAAATAA
1 AAATAAATA-ACTAAAAATAA
5983924 AAATAAA-AAGCTTAAAAATAA
1 AAATAAATAA-C-TAAAAATAA
*
5983945 AAATAAAATAAAATAAAAATA
1 AAAT-AAAT-AACTAAAAATA
5983966 TGCAATTGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 1 0.03
20 2 0.06
21 20 0.56
22 11 0.31
24 2 0.06
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.21
Consensus pattern (20 bp):
AAATAAATAACTAAAAATAA
Found at i:5984252 original size:10 final size:10
Alignment explanation
Indices: 5984233--5984267 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
5984223 AACCTAAAAA
5984233 TCTA-ATTTT
1 TCTAGATTTT
*
5984242 TTTAGATTTT
1 TCTAGATTTT
5984252 TCTAGATTTT
1 TCTAGATTTT
5984262 TCTAGA
1 TCTAGA
5984268 ATCTTTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 3 0.13
10 20 0.87
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.60
Consensus pattern (10 bp):
TCTAGATTTT
Found at i:5987373 original size:6 final size:6
Alignment explanation
Indices: 5987362--5987388 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
5987352 CCAAATCATC
5987362 AATTTT AATTTT AATTTT AATTTT AAT
1 AATTTT AATTTT AATTTT AATTTT AAT
5987389 CAATCATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
AATTTT
Found at i:5990663 original size:22 final size:22
Alignment explanation
Indices: 5990635--5990685 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
5990625 TGCATCCTGG
*
5990635 AATTCTCGGATGACAACCTAAC
1 AATTCTCAGATGACAACCTAAC
5990657 AATTCTCAGATGACAACCTAAC
1 AATTCTCAGATGACAACCTAAC
5990679 AATTCTC
1 AATTCTC
5990686 TTAACTTCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.25
Consensus pattern (22 bp):
AATTCTCAGATGACAACCTAAC
Found at i:5995568 original size:2 final size:2
Alignment explanation
Indices: 5995563--5995596 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
5995553 TTTTTTATGC
5995563 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5995597 TGGTTTAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5995976 original size:4 final size:4
Alignment explanation
Indices: 5995969--5996002 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
5995959 TTTATATGCA
*
5995969 TATG TATG TATG TACG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TA
5996003 GACAAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:5996085 original size:2 final size:2
Alignment explanation
Indices: 5996078--5996110 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5996068 ATCATTTCCT
5996078 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
5996111 ATATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:5996115 original size:2 final size:2
Alignment explanation
Indices: 5996110--5996152 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
5996100 TCTCTCTCTC
5996110 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5996152 T
1 T
5996153 GCACGGGGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6003859 original size:6 final size:6
Alignment explanation
Indices: 6003842--6003914 Score: 94
Period size: 6 Copynumber: 12.2 Consensus size: 6
6003832 ACAGGTGGGA
* * *
6003842 ATGAGG AGGAGG ATGAGG ATGTGG ATGCA-G ATGAGG TTGAGG ATGAGG
1 ATGAGG ATGAGG ATGAGG ATGAGG ATG-AGG ATGAGG ATGAGG ATGAGG
*
6003890 ATGAGG ATGAGG ATGAGA ATGAGG A
1 ATGAGG ATGAGG ATGAGG ATGAGG A
6003915 GAAGGAGAAG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
5 1 0.02
6 56 0.98
ACGTcount: A:0.33, C:0.01, G:0.48, T:0.18
Consensus pattern (6 bp):
ATGAGG
Found at i:6013197 original size:22 final size:22
Alignment explanation
Indices: 6013172--6013335 Score: 100
Period size: 22 Copynumber: 7.5 Consensus size: 22
6013162 ATGATTAACA
*
6013172 ATTAAGTTATCATTAATTTATT
1 ATTAAATTATCATTAATTTATT
*
6013194 ATTATATTATCA-TAGATTTATT
1 ATTAAATTATCATTA-ATTTATT
* * * * *
6013216 ACTAAGTTATCAGTGATATATT
1 ATTAAATTATCATTAATTTATT
* *
6013238 ATTAAATTATCAATAATTTACT
1 ATTAAATTATCATTAATTTATT
* *
6013260 ACTAAATTAAT-ATTAATTTACT
1 ATTAAATT-ATCATTAATTTATT
* * * * * *
6013282 ACTAACTTGTGAATGATTTATT
1 ATTAAATTATCATTAATTTATT
* * *
6013304 ACTAAATTATGAATT-ATTTACT
1 ATTAAATTAT-CATTAATTTATT
6013326 ATTAAATTAT
1 ATTAAATTAT
6013336 TAATGATTTA
Statistics
Matches: 111, Mismatches: 26, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
21 3 0.03
22 103 0.93
23 5 0.05
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (22 bp):
ATTAAATTATCATTAATTTATT
Found at i:6013279 original size:66 final size:66
Alignment explanation
Indices: 6013209--6013349 Score: 165
Period size: 66 Copynumber: 2.1 Consensus size: 66
6013199 ATTATCATAG
* * * *
6013209 ATTTATTACTAAGTTATCAGTGATATATTATTAAATTATCAATAATTTACTACTAAATTAATATT
1 ATTTACTACTAACTTATCAATGATATATTACTAAATTATCAATAATTTACTACTAAATTAATATT
6013274 A
66 A
* * * * * * * *
6013275 ATTTACTACTAACTTGTGAATGATTTATTACTAAATTATGAATTATTTACTATTAAATTATTAAT
1 ATTTACTACTAACTTATCAATGATATATTACTAAATTATCAATAATTTACTACTAAATTAATATT
*
6013340 G
66 A
6013341 ATTTACTAC
1 ATTTACTAC
6013350 CAAATTATTG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46
Consensus pattern (66 bp):
ATTTACTACTAACTTATCAATGATATATTACTAAATTATCAATAATTTACTACTAAATTAATATT
A
Found at i:6013344 original size:22 final size:22
Alignment explanation
Indices: 6013208--6013414 Score: 143
Period size: 22 Copynumber: 9.5 Consensus size: 22
6013198 TATTATCATA
* * * *
6013208 GATTTATTACTAAGTTATCAGT
1 GATTTACTACTAAATTATTAAT
* * * *
6013230 GATATATTATTAAATTATCAAT
1 GATTTACTACTAAATTATTAAT
* * *
6013252 AATTTACTACTAAATTAATATT
1 GATTTACTACTAAATTATTAAT
* * * *
6013274 AATTTACTACTAACTTGTGAAT
1 GATTTACTACTAAATTATTAAT
* *
6013296 GATTTATTACTAAATTATGAAT
1 GATTTACTACTAAATTATTAAT
* *
6013318 TATTTACTATTAAATTATTAAT
1 GATTTACTACTAAATTATTAAT
* *
6013340 GATTTACTACCAAATTATTGAT
1 GATTTACTACTAAATTATTAAT
6013362 GATTGTA--A-TAAAGTTA-TAATT
1 GATT-TACTACTAAA-TTATTAA-T
* * *
6013383 GATTTACTATTAATTTATTGAT
1 GATTTACTACTAAATTATTAAT
6013405 GATTTACTAC
1 GATTTACTAC
6013415 AAAGATATAA
Statistics
Matches: 145, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
20 7 0.05
21 9 0.06
22 122 0.84
23 7 0.05
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.46
Consensus pattern (22 bp):
GATTTACTACTAAATTATTAAT
Found at i:6013355 original size:44 final size:45
Alignment explanation
Indices: 6013156--6013357 Score: 146
Period size: 44 Copynumber: 4.6 Consensus size: 45
6013146 TCCCAAAAGT
* * * * * * *
6013156 TTATCAATGATTAACAATTAAGTTAT-CATTAATTTATTATTATA
1 TTATCAATGATTTACTACTAAATTATATATTAATTTACTATTAAA
* * * * * * *
6013200 TTATC-ATAGATTTATTACTAAGTTAT-CAGTGATATATTATTAAA
1 TTATCAAT-GATTTACTACTAAATTATATATTAATTTACTATTAAA
* * *
6013244 TTATCAATAATTTACTACTAAATTA-ATATTAATTTACTACTAAC
1 TTATCAATGATTTACTACTAAATTATATATTAATTTACTATTAAA
* * *
6013288 TTGTGAATGATTTATTACTAAATTATGA-ATT-ATTTACTATTAAA
1 TTATCAATGATTTACTACTAAATTAT-ATATTAATTTACTATTAAA
* *
6013332 TTATTAATGATTTACTACCAAATTAT
1 TTATCAATGATTTACTACTAAATTAT
6013358 TGATGATTGT
Statistics
Matches: 125, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
43 2 0.02
44 117 0.94
45 5 0.04
46 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.46
Consensus pattern (45 bp):
TTATCAATGATTTACTACTAAATTATATATTAATTTACTATTAAA
Found at i:6013364 original size:66 final size:64
Alignment explanation
Indices: 6013229--6013414 Score: 180
Period size: 66 Copynumber: 2.8 Consensus size: 64
6013219 AAGTTATCAG
* * * * * * * *
6013229 TGATATATTATTAAATTATCAATAATTTACTACTAAATTAATATTAATTTACTACTAACTTGTGA
1 TGATTTATTA-TAAATTAT-AATTATTTACTATTAAATTATTAATGATTTACTACCAAATTGTGA
6013294 A
64 A
*
6013295 TGATTTATTACTAAATTATGAATTATTTACTATTAAATTATTAATGATTTACTACCAAATTATTG
1 TGATTTATTA-TAAATTAT-AATTATTTACTATTAAATTATTAATGATTTACTACCAAATT-GTG
6013360 -A
63 AA
* *
6013361 TGATTGTA--ATAAAGTTATAATTGATTTACTATTAATTTATTGATGATTTACTAC
1 TGATT-TATTATAAA-TTATAATT-ATTTACTATTAAATTATTAATGATTTACTAC
6013415 AAAGATATAA
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
64 8 0.08
65 34 0.33
66 57 0.55
67 4 0.04
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (64 bp):
TGATTTATTATAAATTATAATTATTTACTATTAAATTATTAATGATTTACTACCAAATTGTGAA
Found at i:6013458 original size:22 final size:22
Alignment explanation
Indices: 6013432--6013534 Score: 127
Period size: 22 Copynumber: 4.7 Consensus size: 22
6013422 TAAATAATTA
6013432 ACTAATTTACGATTAAATTATC
1 ACTAATTTACGATTAAATTATC
6013454 ACTAATTTACGATTAAATTATC
1 ACTAATTTACGATTAAATTATC
* *
6013476 ACTAATTTACTACTAAATTATC
1 ACTAATTTACGATTAAATTATC
* *
6013498 AATAATATAC-ATATAAATTATC
1 ACTAATTTACGAT-TAAATTATC
* * *
6013520 AATGATTTACTATTA
1 ACTAATTTACGATTA
6013535 TGTTATTATG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
21 1 0.01
22 69 0.96
23 2 0.03
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (22 bp):
ACTAATTTACGATTAAATTATC
Found at i:6013540 original size:22 final size:22
Alignment explanation
Indices: 6013515--6013577 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
6013505 TACATATAAA
6013515 TTATCAATGATTTACTATTATG
1 TTATCAATGATTTACTATTATG
* * *
6013537 TTAT-TATGCATTTATTATTTTG
1 TTATCAATG-ATTTACTATTATG
** *
6013559 TTATCCTTAATTTACTATT
1 TTATCAATGATTTACTATT
6013578 TAGTTTTTGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 3 0.09
22 28 0.88
23 1 0.03
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATCAATGATTTACTATTATG
Found at i:6013659 original size:22 final size:21
Alignment explanation
Indices: 6013634--6013693 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
6013624 ATTAACCATG
*
6013634 ATTTATTATCAAGTTATC-ACTA
1 ATTTA-TATTAAGTTATCTA-TA
*
6013656 ATTTATATTAAATTATCTATA
1 ATTTATATTAAGTTATCTATA
6013677 ATTTACTATTAAGTTAT
1 ATTTA-TATTAAGTTAT
6013694 TAATGATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.50
Consensus pattern (21 bp):
ATTTATATTAAGTTATCTATA
Found at i:6013880 original size:22 final size:22
Alignment explanation
Indices: 6013656--6013880 Score: 76
Period size: 22 Copynumber: 10.2 Consensus size: 22
6013646 GTTATCACTA
* *
6013656 ATTTA-TATTAAATTAT-CTATA
1 ATTTACTATTAAATTATAAT-TG
*
6013677 ATTTACTATTAAGTTATTAA-TG
1 ATTTACTATTAAATTA-TAATTG
* *
6013699 ATTAACTACTACTAAGTTAT-ATTG
1 ATT---TACTATTAAATTATAATTG
* *
6013723 ATTTACTTTTAAATT-TCAA-TA
1 ATTTACTATTAAATTAT-AATTG
** * *
6013744 ATAAACTACTAAATTATCATTG
1 ATTTACTATTAAATTATAATTG
*
6013766 ATTTACTATTAAGTTATTTATAATTT
1 ATTTACTATTAA---A-TTATAATTG
6013792 A-TTACTA-T-AATTATCAATT-
1 ATTTACTATTAAATTAT-AATTG
** * *
6013811 AACTACTACTAAATTGA-AATTT
1 ATTTACTATTAAATT-ATAATTG
* * * * *
6013833 ACTTACTATTAAGTTATCACTA
1 ATTTACTATTAAATTATAATTG
6013855 ATTTACTATTAAATTATAATTG
1 ATTTACTATTAAATTATAATTG
6013877 ATTT
1 ATTT
6013881 TTTATTAAGT
Statistics
Matches: 150, Mismatches: 32, Indels: 43
0.67 0.14 0.19
Matches are distributed among these distances:
19 5 0.03
20 11 0.07
21 33 0.22
22 63 0.42
23 4 0.03
24 7 0.05
25 19 0.13
26 8 0.05
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTTACTATTAAATTATAATTG
Found at i:6013887 original size:44 final size:43
Alignment explanation
Indices: 6013839--6013946 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 43
6013829 ATTTACTTAC
* *
6013839 TATTAAGTTATCACTAATTTACTATTAAATTAT-AATTGATTTTT
1 TATTAAGTTATCACTAATTTACAACTAAATTATCAATTG--TTTT
* * * *
6013883 TATTAAGTTATTAATAATTAACAACTAAATTATCACTTGTTTT
1 TATTAAGTTATCACTAATTTACAACTAAATTATCAATTGTTTT
** *
6013926 TATTAACCTATCACTGATTTA
1 TATTAAGTTATCACTAATTTA
6013947 TTAATATGCT
Statistics
Matches: 51, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
43 19 0.37
44 28 0.55
45 4 0.08
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (43 bp):
TATTAAGTTATCACTAATTTACAACTAAATTATCAATTGTTTT
Found at i:6014241 original size:22 final size:22
Alignment explanation
Indices: 6014216--6014276 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
6014206 GATAATTAAT
6014216 TTATCAATTATTTACCAGTAAA
1 TTATCAATTATTTACCAGTAAA
** ** *
6014238 TTATCAAAAATTTATTATTAAA
1 TTATCAATTATTTACCAGTAAA
6014260 TTATCAATGATATTTAC
1 TTATCAAT--TATTTAC
6014277 TTCTAATTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 24 0.83
24 5 0.17
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (22 bp):
TTATCAATTATTTACCAGTAAA
Found at i:6014258 original size:44 final size:45
Alignment explanation
Indices: 6014191--6014276 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
6014181 AATATAAAAA
** *
6014191 AAATTATCAATGATTGATAATTAATTTATCAAT-TATTTACCAGT
1 AAATTATCAAAAATTGATAATTAAATTATCAATATATTTACCAGT
* *
6014235 AAATTATCAAAAATTTATTATTAAATTATCAATGATATTTAC
1 AAATTATCAAAAATTGATAATTAAATTATCAAT-ATATTTAC
6014277 TTCTAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 28 0.80
46 7 0.20
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (45 bp):
AAATTATCAAAAATTGATAATTAAATTATCAATATATTTACCAGT
Found at i:6014309 original size:22 final size:22
Alignment explanation
Indices: 6014284--6014383 Score: 80
Period size: 22 Copynumber: 4.6 Consensus size: 22
6014274 TACTTCTAAT
6014284 TTATGAATGATTTACCATTAAG
1 TTATGAATGATTTACCATTAAG
* *
6014306 TTATAAAAT-ATTTATCATTAAG
1 TTAT-GAATGATTTACCATTAAG
* * *
6014328 TTGTGAATGATTT-CTATTAAA
1 TTATGAATGATTTACCATTAAG
* * **
6014349 TTATTAGTGATTTATTATTAAG
1 TTATGAATGATTTACCATTAAG
6014371 TTATCG-ATGATTT
1 TTAT-GAATGATTT
6014384 GTTATAAAGT
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 18 0.30
22 39 0.65
23 3 0.05
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (22 bp):
TTATGAATGATTTACCATTAAG
Found at i:6014551 original size:19 final size:19
Alignment explanation
Indices: 6014491--6014554 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
6014481 CAATTAAGTT
* *
6014491 ATTAATAATTTACTATTAT
1 ATTATTAATTTACTATTAA
*
6014510 ATTATTAGTGATATT-CTACTAA
1 ATTATTA---AT-TTACTATTAA
6014532 ATTATTAATTTACTATTAA
1 ATTATTAATTTACTATTAA
6014551 ATTA
1 ATTA
6014555 CCAATGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.06
19 18 0.50
22 14 0.39
23 2 0.06
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (19 bp):
ATTATTAATTTACTATTAA
Found at i:6014734 original size:22 final size:22
Alignment explanation
Indices: 6014678--6014807 Score: 88
Period size: 22 Copynumber: 6.0 Consensus size: 22
6014668 ATTCAAGATC
* *
6014678 AAGTTATTACTAATTTA-TATT
1 AAGTTATTATTGATTTACTATT
* * *
6014699 AAATTATGCA-TGATTTATTATT
1 AAGTTAT-TATTGATTTACTATT
*
6014721 AAGTTATTATTGATTTACTTTT
1 AAGTTATTATTGATTTACTATT
* * *
6014743 AAGTT-TTCAATGATTAACTACT
1 AAGTTATT-ATTGATTTACTATT
*
6014765 AAGTTATCAATT-ATTTACTATT
1 AAGTTAT-TATTGATTTACTATT
* * *
6014787 AATTTATCATTGATTTGCTAT
1 AAGTTATTATTGATTTACTAT
6014808 CAATTAATTA
Statistics
Matches: 84, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
21 18 0.21
22 63 0.75
23 3 0.04
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.51
Consensus pattern (22 bp):
AAGTTATTATTGATTTACTATT
Found at i:6014812 original size:22 final size:22
Alignment explanation
Indices: 6014768--6014812 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6014758 AACTACTAAG
*
6014768 TTATCAATTATTTACTATTAAT
1 TTATCAATTATTTACTATCAAT
*
6014790 TTATC-ATTGATTTGCTATCAAT
1 TTATCAATT-ATTTACTATCAAT
6014812 T
1 T
6014813 AATTATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.53
Consensus pattern (22 bp):
TTATCAATTATTTACTATCAAT
Found at i:6014881 original size:22 final size:22
Alignment explanation
Indices: 6014830--6014896 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
6014820 TTAAATTGAA
*
6014830 ATTGATTTACTAATAAATTATT
1 ATTGATTTACTAATAAATTATC
* * *
6014852 ACTAATTTACTATTAAATTATC
1 ATTGATTTACTAATAAATTATC
* * *
6014874 ATTGATTTATTACTAAGTTATC
1 ATTGATTTACTAATAAATTATC
6014896 A
1 A
6014897 ATAATTAACC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (22 bp):
ATTGATTTACTAATAAATTATC
Found at i:6015067 original size:22 final size:22
Alignment explanation
Indices: 6015041--6015111 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
6015031 TGCTAAAAAG
6015041 TTATCAATT-ATTTATCACTAAA
1 TTATC-ATTAATTTATCACTAAA
* * * *
6015063 TTATCATTCATTTATTATTAAG
1 TTATCATTAATTTATCACTAAA
6015085 TTATCATTAATTTA-CTACTAAA
1 TTATCATTAATTTATC-ACTAAA
6015107 TTATC
1 TTATC
6015112 GATGATTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 3 0.08
22 37 0.93
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (22 bp):
TTATCATTAATTTATCACTAAA
Found at i:6015077 original size:11 final size:11
Alignment explanation
Indices: 6015041--6015098 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
6015031 TGCTAAAAAG
6015041 TTATCAATT-AT
1 TTATC-ATTAAT
* *
6015052 TTATCACTAAA
1 TTATCATTAAT
*
6015063 TTATCATTCAT
1 TTATCATTAAT
* *
6015074 TTATTATTAAG
1 TTATCATTAAT
6015085 TTATCATTAAT
1 TTATCATTAAT
6015096 TTA
1 TTA
6015099 CTACTAAATT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
10 2 0.06
11 34 0.94
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (11 bp):
TTATCATTAAT
Found at i:6017574 original size:31 final size:31
Alignment explanation
Indices: 6017536--6017601 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
6017526 AACTTAAATT
* * **
6017536 TTTTTATTTTA-AAAATTTTATTATACATAAA
1 TTTTTATTATATAAAATATTAAAATACAT-AA
6017567 TTTTTATTATATAAAATATTAAAATACATAA
1 TTTTTATTATATAAAATATTAAAATACATAA
6017598 TTTT
1 TTTT
6017602 AAAAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 16 0.53
32 14 0.47
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (31 bp):
TTTTTATTATATAAAATATTAAAATACATAA
Found at i:6018026 original size:15 final size:16
Alignment explanation
Indices: 6018006--6018043 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6017996 AAATTTTTAA
6018006 AATTTTAAAT-AATTT
1 AATTTTAAATCAATTT
* *
6018021 AATTTTACATCATTTT
1 AATTTTAAATCAATTT
6018037 AATTTTA
1 AATTTTA
6018044 GTTTATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTTTAAATCAATTT
Found at i:6024931 original size:71 final size:72
Alignment explanation
Indices: 6024849--6024986 Score: 181
Period size: 70 Copynumber: 1.9 Consensus size: 72
6024839 ATACCAATTT
* * * *
6024849 ATTTAAATAGTTAAAACTTTTTTTGTTATATAATTATTATAAACGAATATTTC-TATTCAAACAT
1 ATTTAAATAGTTAAAAC-TCTTTTGTTACATAACTATTATAAACAAATATTTCTTATTCAAACAT
6024913 AATCATTC
65 AATCATTC
** * *
6024921 ATTT-AATAGTTCTAACTCTTTTGTTACATAACTATTTTTAACAAATATTTCTTATTCAAACATA
1 ATTTAAATAGTTAAAACTCTTTTGTTACATAACTATTATAAACAAATATTTCTTATTCAAACATA
6024985 AT
66 AT
6024987 TAGTCAAACT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
70 29 0.51
71 24 0.42
72 4 0.07
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (72 bp):
ATTTAAATAGTTAAAACTCTTTTGTTACATAACTATTATAAACAAATATTTCTTATTCAAACATA
ATCATTC
Found at i:6025306 original size:18 final size:18
Alignment explanation
Indices: 6025283--6025317 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6025273 TGCATTACAC
6025283 TTTTCTTTCCCTCTCATG
1 TTTTCTTTCCCTCTCATG
*
6025301 TTTTCTTTTCCTCTCAT
1 TTTTCTTTCCCTCTCAT
6025318 TTACATGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTTCTTTCCCTCTCATG
Found at i:6027519 original size:24 final size:25
Alignment explanation
Indices: 6027491--6027553 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
6027481 TAATTAATTT
6027491 ATTTTAAAATAATTA-AATATTT-AA
1 ATTTTAAAATAATTATAAT-TTTAAA
*
6027515 ATTTTAAAGAT-TTTATAATTTTAAA
1 ATTTTAAA-ATAATTATAATTTTAAA
6027540 ATTTTAACAATAAT
1 ATTTTAA-AATAAT
6027554 GCAATAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 14 0.44
25 16 0.50
26 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTTTAAAATAATTATAATTTTAAA
Found at i:6027535 original size:8 final size:8
Alignment explanation
Indices: 6027491--6027546 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
6027481 TAATTAATTT
6027491 ATTTTAAA
1 ATTTTAAA
*
6027499 ATAATT-AA
1 AT-TTTAAA
6027507 ATATTT-AA
1 AT-TTTAAA
6027515 ATTTTAAA
1 ATTTTAAA
*
6027523 GATTTTATA
1 -ATTTTAAA
6027532 ATTTTAAA
1 ATTTTAAA
6027540 ATTTTAA
1 ATTTTAA
6027547 CAATAATGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
7 3 0.07
8 29 0.71
9 9 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (8 bp):
ATTTTAAA
Found at i:6032767 original size:52 final size:53
Alignment explanation
Indices: 6032688--6032792 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 53
6032678 ATGCACTCTA
* * **
6032688 ATTTTTTTTCCCTTCATATGATGTTCTTTTAATTTGTTTTCATTAGCCTTGCC
1 ATTTTCTTTCCCTTCATATGATGTTCTTGTAATAAGTTTTCATTAGCCTTGCC
* *
6032741 ATTTTCTTT-CCTTTATTTGATGTTCTTGTAATAAGTTTTCATTAGCCTTGCC
1 ATTTTCTTTCCCTTCATATGATGTTCTTGTAATAAGTTTTCATTAGCCTTGCC
6032793 TGGGACAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 38 0.83
53 8 0.17
ACGTcount: A:0.16, C:0.18, G:0.10, T:0.55
Consensus pattern (53 bp):
ATTTTCTTTCCCTTCATATGATGTTCTTGTAATAAGTTTTCATTAGCCTTGCC
Found at i:6033020 original size:72 final size:72
Alignment explanation
Indices: 6032938--6033083 Score: 283
Period size: 72 Copynumber: 2.0 Consensus size: 72
6032928 ATTATATTAT
6032938 AATAATGTGATGATGCAATTTTCTGGTACTTGTACCTATGAACTATCTTATGCAACAGAGTTGTT
1 AATAATGTGATGATGCAATTTTCTGGTACTTGTACCTATGAACTATCTTATGCAACAGAGTTGTT
6033003 GTTGGTC
66 GTTGGTC
*
6033010 AATAATGTGATGATGCAATTTTCTGGTGCTTGTACCTATGAACTATCTTATGCAACAGAGTTGTT
1 AATAATGTGATGATGCAATTTTCTGGTACTTGTACCTATGAACTATCTTATGCAACAGAGTTGTT
6033075 GTTGGTC
66 GTTGGTC
6033082 AA
1 AA
6033084 GAATTTGCTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (72 bp):
AATAATGTGATGATGCAATTTTCTGGTACTTGTACCTATGAACTATCTTATGCAACAGAGTTGTT
GTTGGTC
Found at i:6034798 original size:16 final size:17
Alignment explanation
Indices: 6034779--6034817 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6034769 CTAAAATTAA
6034779 TAATTT-ATCTAAAAAT
1 TAATTTAATCTAAAAAT
*
6034795 TAATTTAATCTAAAATT
1 TAATTTAATCTAAAAAT
6034812 TAATTT
1 TAATTT
6034818 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTTAATCTAAAAAT
Found at i:6034825 original size:33 final size:34
Alignment explanation
Indices: 6034765--6034844 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 34
6034755 CAATTCAATA
* *
6034765 CAATCTAAAATTAATAATTTATCTAAAAATTAATT
1 CAATCTAAAATT-ATAATTTATCTAAAAAATAAAT
* * *
6034800 TAATCTAAAATT-TAATTTTTTTAAAAAATAAAT
1 CAATCTAAAATTATAATTTATCTAAAAAATAAAT
6034833 CAATCTTAAAAT
1 CAATC-TAAAAT
6034845 ATCAAATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 21 0.55
34 6 0.16
35 11 0.29
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (34 bp):
CAATCTAAAATTATAATTTATCTAAAAAATAAAT
Found at i:6041854 original size:25 final size:25
Alignment explanation
Indices: 6041816--6041863 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6041806 TTTTTATATT
*
6041816 TATATCATATTTTATATAAAAATTA
1 TATATCATAATTTATATAAAAATTA
* *
6041841 TATATTATAATTTATATGAAAAT
1 TATATCATAATTTATATAAAAAT
6041864 ATAAAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
TATATCATAATTTATATAAAAATTA
Found at i:6041906 original size:22 final size:22
Alignment explanation
Indices: 6041881--6041928 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
6041871 ATTTTTTTAA
6041881 TTTATCAA-A-TTTATTTATAATT
1 TTTATCAATATTTTATTT-T-ATT
*
6041903 TTTATTAATATTTTATTTTATT
1 TTTATCAATATTTTATTTTATT
6041925 TTTA
1 TTTA
6041929 ATTCTCGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 14 0.61
23 2 0.09
24 7 0.30
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATCAATATTTTATTTTATT
Found at i:6053081 original size:177 final size:175
Alignment explanation
Indices: 6052568--6053087 Score: 561
Period size: 178 Copynumber: 2.9 Consensus size: 175
6052558 TTTGCCCGGA
* * *
6052568 CATATCCCCTTCCCGGGAAATCTTAAAGG-CAGAAGTATAGCACTAAGGTTATTTACCAAAAATA
1 CATATCCCCTTCCCGGGAAATCTTAAAGGCCCG-AG-ATAGCACTATGATTATTTACCAAAAATA
* * *
6052632 CTAAAATTAGATTAAGAAAGGCAAAACAACCTTGAAGGAGACTAAGCATTTAAAACATAATAATA
64 CT-AAATTAGATTAACAAAGG-AAAA-AA-CTTGAAGAAGACTAAGCATTTAAAACATAACAATA
*
6052697 ATTCCTAGCAATAACTAAT--AACATTAACAAAGAACAGGATTTGCTCGGG
125 ATTCCTAGCAATAACTAATACAACATTAACAAAGAACAGGATTTGCTAGGG
* * ** * * *
6052746 CATATTCCCTTCCCGGGCAATCTTAACTGCGCGAGAAAACAACTATGATTATTTACCAAAAATAC
1 CATATCCCCTTCCCGGGAAATCTTAAAGGCCCGAGATAGC-ACTATGATTATTTACCAAAAATAC
* * *
6052811 TAAATTTAGATTAACAAAGTAAAAACAAACTTGAAGAAGTCTAAGCATTTAAAACATAACAACAA
65 TAAA-TTAGATTAACAAAG--GAAA-AAACTTGAAGAAGACTAAGCATTTAAAACATAACAATAA
* * *
6052876 TTCCTAGCAATAA-TTA-ACACCATTAACAAAGAACAGGCTTTGC-AGGG
126 TTCCTAGCAATAACTAATACAACATTAACAAAGAACAGGATTTGCTAGGG
* * * *
6052923 CCTATCCCCTTCCC-GGAGAATCTTAAGGGCCCGAGCATAGCACTATGATTATTTTCCAAAATTA
1 CATATCCCCTTCCCGGGA-AATCTTAAAGGCCCGAG-ATAGCACTATGATTATTTACCAAAAATA
** * * * *
6052987 CTATAATTAGATTAA-AAAGGGTAAAACTTAGAACAAGCCAAAGCATTTAAAACATAAGAATAAT
64 CTA-AATTAGATTAACAAAGGAAAAAACTT-GAAGAAGACTAAGCATTTAAAACATAACAATAAT
*
6053051 TCCTAGCAATAACTAATACAATCGTTAACAAAGAACA
127 TCCTAGCAATAACTAATACAA-CATTAACAAAGAACA
6053088 ACAATATCTA
Statistics
Matches: 286, Mismatches: 41, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
173 6 0.02
174 42 0.15
175 2 0.01
176 9 0.03
177 84 0.29
178 136 0.48
179 6 0.02
180 1 0.00
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.24
Consensus pattern (175 bp):
CATATCCCCTTCCCGGGAAATCTTAAAGGCCCGAGATAGCACTATGATTATTTACCAAAAATACT
AAATTAGATTAACAAAGGAAAAAACTTGAAGAAGACTAAGCATTTAAAACATAACAATAATTCCT
AGCAATAACTAATACAACATTAACAAAGAACAGGATTTGCTAGGG
Found at i:6054096 original size:32 final size:31
Alignment explanation
Indices: 6054046--6054115 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
6054036 TATAAATTAT
* * *
6054046 AATATATAATTTTTATATAAAATATGATATA
1 AATATATAATTTTAATATAAAATATAACATA
**
6054077 AATATATAAATTTTAATATATTATATAACATA
1 AATATAT-AATTTTAATATAAAATATAACATA
6054109 AATATAT
1 AATATAT
6054116 GAATCGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
31 7 0.21
32 26 0.79
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (31 bp):
AATATATAATTTTAATATAAAATATAACATA
Found at i:6054242 original size:9 final size:9
Alignment explanation
Indices: 6054230--6054275 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
6054220 TTACTTTTTG
6054230 TTTTTTTAT
1 TTTTTTTAT
6054239 TTTTTTTAT
1 TTTTTTTAT
*
6054248 TATTTGTTTCT
1 T-TTT-TTTAT
*
6054259 TTTTTTTAA
1 TTTTTTTAT
6054268 TTTTTTTA
1 TTTTTTTA
6054276 AAAGGGGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 21 0.66
10 6 0.19
11 5 0.16
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:6054245 original size:24 final size:23
Alignment explanation
Indices: 6054218--6054265 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
6054208 TAGTTGATGA
*
6054218 TTTTACTT-TTTGTTTTTTTATTTT
1 TTTTA-TTATTTGTTTCTTT-TTTT
6054242 TTTTATTATTTGTTTCTTTTTTT
1 TTTTATTATTTGTTTCTTTTTTT
6054265 T
1 T
6054266 AATTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.08, C:0.04, G:0.04, T:0.83
Consensus pattern (23 bp):
TTTTATTATTTGTTTCTTTTTTT
Found at i:6058794 original size:50 final size:50
Alignment explanation
Indices: 6058705--6058807 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
6058695 TGTTCCCATG
* *
6058705 CATCAAAGTTTACATTATTATCAATGGCCTAATAGTAATTTTGTTAT-ATA
1 CATCAAAGTTTACATTATTATCAATGGCATAATAATAATTTTGTT-TCATA
* **
6058755 CATCAAA-TTTGACATTTTTATCAATGGCATTTTAATAATTTTGTTTCATA
1 CATCAAAGTTT-ACATTATTATCAATGGCATAATAATAATTTTGTTTCATA
6058805 CAT
1 CAT
6058808 TCCAAAACCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 4 0.09
50 42 0.91
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (50 bp):
CATCAAAGTTTACATTATTATCAATGGCATAATAATAATTTTGTTTCATA
Found at i:6059014 original size:21 final size:18
Alignment explanation
Indices: 6058990--6059032 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
6058980 TTCATATTTA
6058990 ATTATCATGCATTCATGATAT
1 ATTATCATG--TTCATGA-AT
*
6059011 ATTATTATGTTCATGAAT
1 ATTATCATGTTCATGAAT
6059029 ATTA
1 ATTA
6059033 CATAAGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 7 0.33
21 8 0.38
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (18 bp):
ATTATCATGTTCATGAAT
Found at i:6061839 original size:117 final size:117
Alignment explanation
Indices: 6061633--6061863 Score: 322
Period size: 117 Copynumber: 2.0 Consensus size: 117
6061623 ATGACCCTCT
** ** * *
6061633 TTTTATGTCCGATGTGAGATTCAGGACTCTTCCTTAGGTCTGTGACATTCTTTCCCACCGAACTT
1 TTTTATGTCCGATGTGAGATTCAAAACTCTTCCTTAGGTCTGTGACATTCTCCCCCACCCAACCT
* *
6061698 CGTGACGCCCTCGTCACAAAGGCTGACCACCCTA-CTTACCTCCCTCGAATGG
66 CATGACGCCCTCATCACAAAGGCTGACCACCCTATC-TACCTCCCTCGAATGG
6061750 TTTTATGTCCGATGTGAGATTCAAAACTCTTCCTTAGGTCTGTGACATTCTCCCCCACCCAACCT
1 TTTTATGTCCGATGTGAGATTCAAAACTCTTCCTTAGGTCTGTGACATTCTCCCCCACCCAACCT
* ** *
6061815 CATGA-GACCCTTATCACTGAGGCTGACCACCTTATCTACCTCCCTCGAA
66 CATGACG-CCCTCATCACAAAGGCTGACCACCCTATCTACCTCCCTCGAA
6061864 GGGCTTGACG
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
116 1 0.01
117 98 0.98
118 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.30
Consensus pattern (117 bp):
TTTTATGTCCGATGTGAGATTCAAAACTCTTCCTTAGGTCTGTGACATTCTCCCCCACCCAACCT
CATGACGCCCTCATCACAAAGGCTGACCACCCTATCTACCTCCCTCGAATGG
Found at i:6062102 original size:96 final size:96
Alignment explanation
Indices: 6061938--6062125 Score: 277
Period size: 96 Copynumber: 2.0 Consensus size: 96
6061928 AAGCTCCGAC
*
6061938 CCGCATGGCTCCAAGACCCGAACATCCATTCATCCAACGTCCCAAATCAACCTACCTACCACGGT
1 CCGCACGGCTCCAAGACCCGAACATCCATTCATCCAACGTCCCAAATCAACCTACCTACCACGGT
*
6062003 TCACACTCTTGTGAGATATTATCCACTCTGA
66 TCACACCCTTGTGAGATATTATCCACTCTGA
* * * *** * *
6062034 CCGCACGGCTCCAGGACCGGAACATCTATTCATTTGACGTCCCAGATCAACCTATCTACCACGGT
1 CCGCACGGCTCCAAGACCCGAACATCCATTCATCCAACGTCCCAAATCAACCTACCTACCACGGT
*
6062099 TCACACCCTTGTGAGGTATTATCCACT
66 TCACACCCTTGTGAGATATTATCCACT
6062126 TTTGCTTCCA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 81 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (96 bp):
CCGCACGGCTCCAAGACCCGAACATCCATTCATCCAACGTCCCAAATCAACCTACCTACCACGGT
TCACACCCTTGTGAGATATTATCCACTCTGA
Found at i:6073259 original size:15 final size:16
Alignment explanation
Indices: 6073239--6073273 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
6073229 CTAATTTGAT
*
6073239 ATAATTTATATA-TTA
1 ATAATTTAAATATTTA
6073254 ATAATTTAAATATTTA
1 ATAATTTAAATATTTA
6073270 ATAA
1 ATAA
6073274 GTAAATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTTAAATATTTA
Found at i:6075211 original size:15 final size:15
Alignment explanation
Indices: 6075164--6075214 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
6075154 TATATTGAAC
*
6075164 TTTATTTTATT-TTT
1 TTTATTTAATTATTT
* *
6075178 TCTTAATTACATAATTT
1 T-TTATTTA-ATTATTT
6075195 TTTATTTAATTATTT
1 TTTATTTAATTATTT
6075210 TTTAT
1 TTTAT
6075215 ATAAAATTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 1 0.03
15 16 0.55
16 8 0.28
17 4 0.14
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATTTAATTATTT
Found at i:6077355 original size:24 final size:24
Alignment explanation
Indices: 6077309--6077355 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
6077299 AGCTGAAGTG
* *
6077309 GAGGAAGAAGAAGAACAGTCTGAA
1 GAGGAAGAACAAGAACAGCCTGAA
* *
6077333 GAGGAAGTACAAGAAGAGCCTGA
1 GAGGAAGAACAAGAACAGCCTGA
6077356 GGTCATTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.34, T:0.09
Consensus pattern (24 bp):
GAGGAAGAACAAGAACAGCCTGAA
Found at i:6080887 original size:296 final size:295
Alignment explanation
Indices: 6080353--6080944 Score: 1123
Period size: 296 Copynumber: 2.0 Consensus size: 295
6080343 TATCTTATCG
6080353 ATGACACTCTGTTGCACTAATACTAAAGCATGCTAAACATGTAAACCAAGAGCATAGATTTGGCT
1 ATGACACTCTGTTGCACTAATACTAAAGCATGCTAAACATGTAAACCAAGAGCATAGATTTGGCT
*
6080418 TGCAAGGGATATCTTCTGCTAAGTGAGCAGGGTTCATGGACTAGAACAGATCTTGCTGATCACCT
66 TGCAAGGGATAACTTCTGCTAAGTGAGCAGGGTTCATGGACTAGAACAGATCTTGCTGATCACCT
6080483 GATTTTGCTATGCTAAAACATCTAGACTACTGTTGCTAGAGTTTTCATGGACTAGAATAGTTCTA
131 GATTTTGCTATGCTAAAACATCTAGACTACTGTTGCTAGAGTTTTCATGGACTAGAATAGTTCTA
6080548 GCTGATCGCCTCAATTTTCAAAGTTTGAACCTCTTGATTATTGTTGCTAGGGTTTCAGTTGTTTT
196 GCTGATCGCCTCAATTTTCAAAGTTTGAACCTCTTGATTATTGTTGCTAGGGTTTCAGTTG-TTT
6080613 GGGAGTTTAGTTCAAGTTTTAAATGATACTAGTTAA
260 GGGAGTTTAGTTCAAGTTTTAAATGATACTAGTTAA
*
6080649 ATGACACTCTGTTGTACTAATACTAAAGCATGCTAAACATGTAAACCAAGAGCATAGATTTGGCT
1 ATGACACTCTGTTGCACTAATACTAAAGCATGCTAAACATGTAAACCAAGAGCATAGATTTGGCT
6080714 TGCAAGGGATAACTTCTGCTAAGTGAGCAGGGTTCATGGACTAGAACAGATCTTGCTGATCACCT
66 TGCAAGGGATAACTTCTGCTAAGTGAGCAGGGTTCATGGACTAGAACAGATCTTGCTGATCACCT
* *
6080779 GATTTTGCTATGCTCAAACATCTAGATTACCT-TTGCTAGAGTTTTCATGGACTAGAATAGTTCT
131 GATTTTGCTATGCTAAAACATCTAGACTA-CTGTTGCTAGAGTTTTCATGGACTAGAATAGTTCT
6080843 AGCTGATCGCCTCAATTTTCAAAGTTTGAACCTCTTGATTATTGTTGCTAGGGTTTCAGTTGTTT
195 AGCTGATCGCCTCAATTTTCAAAGTTTGAACCTCTTGATTATTGTTGCTAGGGTTTCAGTTGTTT
6080908 GGGAGTTTAGTTCAAGTTTTAAATGATACTAGTTAA
260 GGGAGTTTAGTTCAAGTTTTAAATGATACTAGTTAA
6080944 A
1 A
6080945 ATTTGGATTA
Statistics
Matches: 291, Mismatches: 4, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
295 40 0.14
296 249 0.86
297 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (295 bp):
ATGACACTCTGTTGCACTAATACTAAAGCATGCTAAACATGTAAACCAAGAGCATAGATTTGGCT
TGCAAGGGATAACTTCTGCTAAGTGAGCAGGGTTCATGGACTAGAACAGATCTTGCTGATCACCT
GATTTTGCTATGCTAAAACATCTAGACTACTGTTGCTAGAGTTTTCATGGACTAGAATAGTTCTA
GCTGATCGCCTCAATTTTCAAAGTTTGAACCTCTTGATTATTGTTGCTAGGGTTTCAGTTGTTTG
GGAGTTTAGTTCAAGTTTTAAATGATACTAGTTAA
Found at i:6083529 original size:24 final size:23
Alignment explanation
Indices: 6083476--6083535 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
6083466 AGATAATTTG
*
6083476 TATAATAAATTTTAAAAATTAATAT
1 TATAATAAA-TTT-AAAATTAACAT
*
6083501 T-TAATAAATTTAAATTTAACATT
1 TATAATAAATTTAAAATTAACA-T
6083524 TATAAT-AATTTA
1 TATAATAAATTTA
6083536 TTTTAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 8 0.26
23 11 0.35
24 11 0.35
25 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TATAATAAATTTAAAATTAACAT
Found at i:6083551 original size:18 final size:19
Alignment explanation
Indices: 6083528--6083564 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
6083518 AACATTTATA
6083528 ATAATTTATTT-TAAAATT
1 ATAATTTATTTATAAAATT
*
6083546 ATAATTTTTTTATAAAATT
1 ATAATTTATTTATAAAATT
6083565 TTGAGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATAATTTATTTATAAAATT
Found at i:6085043 original size:14 final size:16
Alignment explanation
Indices: 6085013--6085045 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
6085003 TCCTCTCATT
6085013 TTTCTCTCTCTTTTAA
1 TTTCTCTCTCTTTTAA
6085029 TTTCT-TCTC-TTTAA
1 TTTCTCTCTCTTTTAA
6085043 TTT
1 TTT
6085046 TGTTCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCTCTCTCTTTTAA
Found at i:6088267 original size:20 final size:20
Alignment explanation
Indices: 6088244--6088318 Score: 54
Period size: 19 Copynumber: 4.0 Consensus size: 20
6088234 TATATTATTA
6088244 AATTTATTAATATTAAAAAT
1 AATTTATTAATATTAAAAAT
* *
6088264 AA-TTA-T-ATTTTAATAAT
1 AATTTATTAATATTAAAAAT
*
6088281 AATAT-TTAATATT-AAAAT
1 AATTTATTAATATTAAAAAT
* *
6088299 -ATTATGTTAATATAAAAAAT
1 AATT-TATTAATATTAAAAAT
6088319 TCTTTAAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
17 13 0.31
18 8 0.19
19 14 0.33
20 7 0.17
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
AATTTATTAATATTAAAAAT
Found at i:6088268 original size:35 final size:36
Alignment explanation
Indices: 6088229--6088297 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
6088219 CATATATTGA
* *
6088229 AATTATATATT-ATTA-AATTTATTAATATTAAAAAT
1 AATTATATATTAATAATAATAT-TTAATATTAAAAAT
*
6088264 AATTATATTTTAATAATAATATTTAATATTAAAA
1 AATTATATATTAATAATAATATTTAATATTAAAA
6088298 TATTATGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 10 0.34
36 15 0.52
37 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (36 bp):
AATTATATATTAATAATAATATTTAATATTAAAAAT
Found at i:6088269 original size:19 final size:20
Alignment explanation
Indices: 6088250--6088318 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 20
6088240 ATTAAATTTA
6088250 TTAATATTAAAAATAATTA-
1 TTAATATTAAAAATAATTAT
* *
6088269 -T-ATTTTAATAATAA-TAT
1 TTAATATTAAAAATAATTAT
6088286 TTAATATT-AAAAT-ATTAT
1 TTAATATTAAAAATAATTAT
*
6088304 GTTAATATAAAAAAT
1 -TTAATATTAAAAAT
6088319 TCTTTAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 2 0.05
17 12 0.31
18 9 0.23
19 11 0.28
20 5 0.13
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
TTAATATTAAAAATAATTAT
Found at i:6088361 original size:13 final size:11
Alignment explanation
Indices: 6088331--6088530 Score: 74
Period size: 12 Copynumber: 17.4 Consensus size: 11
6088321 TTTAAATTAT
6088331 TTATTAATATA
1 TTATTAATATA
6088342 TTA-TAATAATA
1 TTATTAAT-ATA
*
6088353 GTTATTAATTAAA
1 -TTATTAA-TATA
*
6088366 TTAATAATAT-
1 TTATTAATATA
6088376 TTATTTTAATATTA
1 TTA--TTAATA-TA
6088390 TTTATTAATATA
1 -TTATTAATATA
* *
6088402 ATATT-ATTTA
1 TTATTAATATA
*
6088412 TTTATCAATATA
1 -TTATTAATATA
* *
6088424 ATATT-ATTTA
1 TTATTAATATA
6088434 TTAAAATTAATATA
1 TT---ATTAATATA
6088448 TTAGTATAATAT-
1 TTA-T-TAATATA
*
6088460 TTATTTATAATA
1 TTATTAAT-ATA
* *
6088472 ATATTTAT-TA
1 TTATTAATATA
*
6088482 ATA-TAATATCA
1 TTATTAATAT-A
*
6088493 TTATGAATATA
1 TTATTAATATA
6088504 TTA-TAATATTA
1 TTATTAATA-TA
*
6088515 TTTATTAACATA
1 -TTATTAATATA
6088527 TTAT
1 TTAT
6088531 ATTAATAATA
Statistics
Matches: 143, Mismatches: 21, Indels: 50
0.67 0.10 0.23
Matches are distributed among these distances:
9 3 0.02
10 29 0.20
11 35 0.24
12 41 0.29
13 25 0.17
14 7 0.05
15 3 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (11 bp):
TTATTAATATA
Found at i:6088391 original size:33 final size:34
Alignment explanation
Indices: 6088348--6088414 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
6088338 TATATTATAA
6088348 TAATAGTTATTAATTAA-ATTAATAATATTTATTT
1 TAATAGTTATTAATTAATA-TAATAATATTTATTT
* *
6088382 TAATA-TTATTTATTAATATAATATTATTTATTT
1 TAATAGTTATTAATTAATATAATAATATTTATTT
6088415 ATCAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (34 bp):
TAATAGTTATTAATTAATATAATAATATTTATTT
Found at i:6088395 original size:37 final size:39
Alignment explanation
Indices: 6088340--6088547 Score: 167
Period size: 40 Copynumber: 5.1 Consensus size: 39
6088330 TTTATTAATA
* *
6088340 TATTATAATAATAGTTATTAAT-TAA-ATTAATAATATT
1 TATTATAATATTATTTATTAATATAATATTAATAATATT
* *
6088377 TATTTTAATATTATTTATTAATATAATATT-AT-TTATT
1 TATTATAATATTATTTATTAATATAATATTAATAATATT
*
6088414 TATCAATATAATATTATTTATTAAAATTAATATATTAGTATAATATT
1 TAT---TATAATATTATTTATTAATA-T-A-ATATTA--ATAATATT
* *
6088461 TATTTATAATAATATTTATTAATATAATATCATTATGAATA--
1 TA-TTATAATATTATTTATTAATATAATAT--TAAT-AATATT
*
6088502 TATTATAATATTATTTATTAACATATTATATTAATAATATAT
1 TATTATAATATTATTTATT-A-ATATAATATTAATAATAT-T
6088544 TATT
1 TATT
6088548 TGTAAGTAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 37
0.73 0.07 0.20
Matches are distributed among these distances:
37 26 0.19
38 5 0.04
39 7 0.05
40 37 0.27
41 4 0.03
42 19 0.14
43 10 0.07
44 2 0.01
45 18 0.13
46 2 0.01
47 6 0.04
48 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (39 bp):
TATTATAATATTATTTATTAATATAATATTAATAATATT
Found at i:6088415 original size:22 final size:22
Alignment explanation
Indices: 6088387--6088520 Score: 102
Period size: 22 Copynumber: 6.2 Consensus size: 22
6088377 TATTTTAATA
6088387 TTATTTATTAATATAATATTAT
1 TTATTTATTAATATAATATTAT
*
6088409 TTATTTATCAATATAATATTAT
1 TTATTTATTAATATAATATTAT
* * *
6088431 TTATTAAAATTAATATATTAGTAT
1 TTATT--TATTAATATAATATTAT
*
6088455 AATATTTATT--TATAATA--A-
1 -TTATTTATTAATATAATATTAT
*
6088473 -TATTTATTAATATAATATCA-
1 TTATTTATTAATATAATATTAT
** *
6088493 TTATGAATATATTATAATATTAT
1 TTATTTAT-TAATATAATATTAT
6088516 TTATT
1 TTATT
6088521 AACATATTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 19
0.74 0.11 0.16
Matches are distributed among these distances:
16 8 0.09
18 7 0.08
19 1 0.01
20 1 0.01
21 11 0.12
22 37 0.42
23 7 0.08
24 13 0.15
25 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (22 bp):
TTATTTATTAATATAATATTAT
Found at i:6088435 original size:29 final size:29
Alignment explanation
Indices: 6088327--6088490 Score: 81
Period size: 27 Copynumber: 5.7 Consensus size: 29
6088317 ATTCTTTAAA
* * * *
6088327 TTATTTATTAATATATTA-TA-ATAATAG
1 TTATTTATTAATATAATATTATTTATTAT
* *
6088354 TTATTAATTAA-ATTAATAATATTTATT-T
1 TTATTTATTAATA-TAATATTATTTATTAT
* * *
6088382 TAATATTATTTAT-TAATAT-A-ATATTAT
1 TTAT-TTATTAATATAATATTATTTATTAT
*
6088409 TTATTTATCAATATAATATTATTTATTAAAAT
1 TTATTTATTAATATAATATTATTTATT---AT
* * * *
6088441 TAATATATTAGTATAATATTTATTTATAAT
1 TTATTTATTAATATAATA-TTATTTATTAT
*
6088471 AATATTTATTAATATAATAT
1 -TTATTTATTAATATAATAT
6088491 CATTATGAAT
Statistics
Matches: 100, Mismatches: 23, Indels: 25
0.68 0.16 0.17
Matches are distributed among these distances:
26 11 0.11
27 25 0.25
28 11 0.11
29 12 0.12
30 3 0.03
31 14 0.14
32 16 0.16
33 8 0.08
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.54
Consensus pattern (29 bp):
TTATTTATTAATATAATATTATTTATTAT
Found at i:6088477 original size:85 final size:80
Alignment explanation
Indices: 6088365--6088548 Score: 235
Period size: 85 Copynumber: 2.2 Consensus size: 80
6088355 TATTAATTAA
* * *
6088365 ATTAATAATATTTATTTTAATATTATTTATTAATATAATATTATT-TATTTATCAATATAATATT
1 ATTAATAATATTTATTTTAATAATATTTATTAATATAATATCATTATA-ATAT-AATATAATATT
6088429 ATTTATTAAAATTAATAT
64 ATTTATTAAAA-TAATAT
*
6088447 ATTAGTATAATATTTATTTATAATAATATTTATTAATATAATATCATTATGAATATATTATAATA
1 ATTA--ATAATATTTATTT-TAATAATATTTATTAATATAATATCATTAT-AATATAATATAATA
* *
6088512 TTATTTATTAACATATTAT
62 TTATTTATTAAAATAATAT
6088531 ATTAATAATATATTATTT
1 ATTAATAATAT-TTATTT
6088549 GTAAGTAAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
82 11 0.12
83 6 0.07
84 22 0.24
85 46 0.51
86 4 0.04
87 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (80 bp):
ATTAATAATATTTATTTTAATAATATTTATTAATATAATATCATTATAATATAATATAATATTAT
TTATTAAAATAATAT
Found at i:6088496 original size:29 final size:30
Alignment explanation
Indices: 6088410--6088490 Score: 92
Period size: 32 Copynumber: 2.6 Consensus size: 30
6088400 TAATATTATT
*
6088410 TATTTATCAATATAATATTATTTATTAA-AA
1 TATTTATTAATATAATATTATTTA-TAATAA
* *
6088440 TTAATATATTAGTATAATATTTATTTATAATAA
1 -T-ATTTATTAATATAATA-TTATTTATAATAA
6088473 TATTTATTAATATAATAT
1 TATTTATTAATATAATAT
6088491 CATTATGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
30 1 0.02
31 15 0.36
32 17 0.40
33 9 0.21
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (30 bp):
TATTTATTAATATAATATTATTTATAATAA
Found at i:6091915 original size:9 final size:10
Alignment explanation
Indices: 6091873--6091921 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 10
6091863 TATAAATTAC
6091873 TAATATAAAA
1 TAATATAAAA
6091883 T-ATATAAAA
1 TAATATAAAA
* *
6091892 -AATTATCATA
1 TAA-TATAAAA
6091902 TAATA-AAAA
1 TAATATAAAA
6091911 TAATATAAAA
1 TAATATAAAA
6091921 T
1 T
6091922 TCAATTGAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
9 16 0.52
10 13 0.42
11 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
TAATATAAAA
Found at i:6093543 original size:14 final size:17
Alignment explanation
Indices: 6093524--6093560 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
6093514 TATATATATA
6093524 TATTTTA-TC-TTTTT-
1 TATTTTATTCATTTTTG
6093538 TATTTTATTCATTTTTG
1 TATTTTATTCATTTTTG
6093555 TATTTT
1 TATTTT
6093561 TACTTATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.35
15 2 0.10
16 5 0.25
17 6 0.30
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (17 bp):
TATTTTATTCATTTTTG
Found at i:6094686 original size:57 final size:58
Alignment explanation
Indices: 6094604--6094942 Score: 436
Period size: 57 Copynumber: 5.7 Consensus size: 58
6094594 AAAATTCCAA
*
6094604 AAAAAAATATTTTTA-GGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
** * *
6094661 -AAAAAATATTTTTAGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAAAAAATTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTTC
6094723 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
1 --AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
* * * *
6094782 CAAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
*
6094839 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTTC
1 --AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT-AAATTTTC
*
6094900 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
6094943 CTACAAAAAA
Statistics
Matches: 250, Mismatches: 18, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
56 14 0.06
57 78 0.31
58 1 0.00
59 47 0.19
60 53 0.21
61 4 0.02
62 12 0.05
65 41 0.16
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
Found at i:6094698 original size:27 final size:27
Alignment explanation
Indices: 6094612--6094699 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
6094602 AAAAAAAAAT
*
6094612 ATTTTTAG-GAAAAGTTGAAAGTATCA
1 ATTTTTAGAAAAAAGTTGAAAGTATCA
* * **
6094638 ATTTTTCTTAGAAATAAATTTTCAAAAAAT--
1 A--TTT-TTAGAAA-AAA-GTTGAAAGTATCA
6094668 ATTTTTAGAAAAAAGTTGAAAGTATCA
1 ATTTTTAGAAAAAAGTTGAAAGTATCA
6094695 ATTTT
1 ATTTT
6094700 CCTTAAAAGA
Statistics
Matches: 45, Mismatches: 9, Indels: 15
0.65 0.13 0.22
Matches are distributed among these distances:
25 7 0.16
26 4 0.09
27 12 0.27
28 6 0.13
29 4 0.09
30 2 0.04
31 3 0.07
32 7 0.16
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (27 bp):
ATTTTTAGAAAAAAGTTGAAAGTATCA
Found at i:6094728 original size:122 final size:120
Alignment explanation
Indices: 6094592--6094955 Score: 519
Period size: 122 Copynumber: 3.0 Consensus size: 120
6094582 AAATAAAAAT
*
6094592 AAAAAA-TTCCAAAAAAAAATATTTTTA-GGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAA
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
* **
6094655 ATTTTCAAAAAATATTTTTAGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAA
66 ATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-T-AAAGAAA
6094712 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
* * *
6094777 ATTTCCAAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTCCT-CAG--A
66 ATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAAAGAAA
*
6094829 AATAAATTT-CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATC
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT-
* *
6094892 AAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCCTACA-AAA
64 AAATTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT-CCTAAAGAAA
6094951 AAAAA
1 AAAAA
6094956 TCATTCTTTC
Statistics
Matches: 222, Mismatches: 12, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
115 1 0.00
116 51 0.23
117 15 0.07
119 40 0.18
120 9 0.04
121 24 0.11
122 82 0.37
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (120 bp):
AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
ATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAAAGAAA
Found at i:6098840 original size:16 final size:16
Alignment explanation
Indices: 6098788--6098851 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
6098778 AAAAAAGATG
6098788 ATGAAAAAA-AAAAAA
1 ATGAAAAAATAAAAAA
* *
6098803 A--AAAAAAGAAAGAA
1 ATGAAAAAATAAAAAA
6098817 A-GAAGAAAAATGAAAAAA
1 ATG-A-AAAAAT-AAAAAA
6098835 ATGAAAAAATAAAAAA
1 ATGAAAAAATAAAAAA
6098851 A
1 A
6098852 GAGATTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
13 6 0.15
14 6 0.15
15 1 0.03
16 8 0.20
17 11 0.28
18 7 0.17
19 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (16 bp):
ATGAAAAAATAAAAAA
Found at i:6100178 original size:42 final size:42
Alignment explanation
Indices: 6100081--6100781 Score: 1095
Period size: 41 Copynumber: 17.0 Consensus size: 42
6100071 GTCTAGGAGT
6100081 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100121 ATTTATTTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100164 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100206 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100246 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAAAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
6100286 ATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100327 ATTTATTTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100370 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100411 ATTTAC-TTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100453 ATTTATTTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100496 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100537 ATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100578 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100620 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
6100660 ATTTACTTTTCC-AAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
6100700 ATTTAC-TTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
6100741 ATTTAC-TTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 ATTTACTTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
6100782 TTTGGTAAAA
Statistics
Matches: 625, Mismatches: 14, Indels: 42
0.92 0.02 0.06
Matches are distributed among these distances:
39 16 0.03
40 150 0.24
41 181 0.29
42 164 0.26
43 112 0.18
44 2 0.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:6100806 original size:9 final size:9
Alignment explanation
Indices: 6100788--6100886 Score: 129
Period size: 9 Copynumber: 11.4 Consensus size: 9
6100778 GAGCTTTGGT
6100788 AAAAAA-AA
1 AAAAAACAA
6100796 AAAAAACAAA
1 AAAAAAC-AA
6100806 AAAAAACAA
1 AAAAAACAA
6100815 AAAAAAC--
1 AAAAAACAA
6100822 -AAAAACAA
1 AAAAAACAA
6100830 AAAAAAC-A
1 AAAAAACAA
6100838 AAAAAAC-A
1 AAAAAACAA
6100846 AAAAAACAAA
1 AAAAAAC-AA
6100856 AAAAAACAA
1 AAAAAACAA
6100865 AAAAAACAA
1 AAAAAACAA
*
6100874 AAAAACCAA
1 AAAAAACAA
6100883 AAAA
1 AAAA
6100887 TGTTAAGTTG
Statistics
Matches: 83, Mismatches: 1, Indels: 13
0.86 0.01 0.13
Matches are distributed among these distances:
6 6 0.07
8 22 0.27
9 38 0.46
10 17 0.20
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:6100825 original size:25 final size:25
Alignment explanation
Indices: 6100788--6100886 Score: 146
Period size: 27 Copynumber: 3.9 Consensus size: 25
6100778 GAGCTTTGGT
6100788 AAAAAAAAAAAAAACAAAAAAAAAC
1 AAAAAAAAAAAAAACAAAAAAAAAC
*
6100813 AAAAAAAACAAAAAC-AAAAAAAAC
1 AAAAAAAAAAAAAACAAAAAAAAAC
6100837 AAAAAAACAAAAAAACAAAAAAAAAC
1 AAAAAAA-AAAAAAACAAAAAAAAAC
*
6100863 AAAAAAAACAAAAAAACCAAAAAA
1 -AAAAAAA-AAAAAAACAAAAAAA
6100887 TGTTAAGTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
24 16 0.24
25 21 0.31
26 9 0.13
27 22 0.32
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAAAAACAAAAAAAAAC
Found at i:6100879 original size:8 final size:8
Alignment explanation
Indices: 6100788--6100886 Score: 112
Period size: 8 Copynumber: 11.8 Consensus size: 8
6100778 GAGCTTTGGT
6100788 AAAAAAA-
1 AAAAAAAC
6100795 AAAAAAAC
1 AAAAAAAC
6100803 AAAAAAAAAC
1 --AAAAAAAC
6100813 AAAAAAA-
1 AAAAAAAC
*
6100820 ACAAAAAC
1 AAAAAAAC
6100828 AAAAAAAAC
1 -AAAAAAAC
6100837 AAAAAAAC
1 AAAAAAAC
6100845 AAAAAAAC
1 AAAAAAAC
6100853 AAAAAAAAAC
1 --AAAAAAAC
6100863 AAAAAAAAC
1 -AAAAAAAC
6100872 AAAAAAACC
1 AAAAAAA-C
6100881 AAAAAA
1 AAAAAA
6100887 TGTTAAGTTG
Statistics
Matches: 82, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
7 13 0.16
8 30 0.37
9 23 0.28
10 16 0.20
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:6100886 original size:1 final size:1
Alignment explanation
Indices: 6100788--6100878 Score: 101
Period size: 1 Copynumber: 91.0 Consensus size: 1
6100778 GAGCTTTGGT
* * * * * * *
6100788 AAAAAAAAAAAAAACAAAAAAAAACAAAAAAAACAAAAACAAAAAAAACAAAAAAACAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
6100853 AAAAAAAAACAAAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
6100879 CCAAAAAATG
Statistics
Matches: 72, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6101105 original size:16 final size:19
Alignment explanation
Indices: 6101084--6101132 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
6101074 TTTTATGTAT
6101084 TGTATTATTTATT-AT-TA
1 TGTATTATTTATTAATATA
*
6101101 T-TATTATGTATTAATATA
1 TGTATTATTTATTAATATA
6101119 TGTATATATTTATT
1 TGTAT-TATTTATT
6101133 TATTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.38
17 3 0.12
18 3 0.12
19 3 0.12
20 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
TGTATTATTTATTAATATA
Found at i:6102311 original size:57 final size:57
Alignment explanation
Indices: 6102245--6102586 Score: 452
Period size: 57 Copynumber: 5.8 Consensus size: 57
6102235 AAATTCCAAA
6102245 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * *
6102302 AAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAACTTTCCTTAAAAGAAAAAAAAATTTCC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCC
*
6102364 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTCC
1 ---AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * * * *
6102424 AAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTTCTCAGAAATAAATTTCAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC--C
*
6102483 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTTCAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC-C
*
6102543 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
6102587 CAAAAAAAAA
Statistics
Matches: 255, Mismatches: 16, Indels: 24
0.86 0.05 0.08
Matches are distributed among these distances:
57 94 0.37
58 1 0.00
59 43 0.17
60 57 0.22
61 7 0.03
62 13 0.05
65 40 0.16
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
Found at i:6102364 original size:122 final size:121
Alignment explanation
Indices: 6102232--6102596 Score: 530
Period size: 122 Copynumber: 3.0 Consensus size: 121
6102222 AAATAAAAAT
6102232 AAAAAA-TTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
* *
6102296 ATTTCCAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAACTTTCCTTAAAAGAAA
66 ATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAAAAGAAA
*
6102353 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAA
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
* ***
6102418 ATTTCCAAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTT--TTCTCAG--A
66 ATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTCCTTAAAAGAAA
*
6102470 AATAAATTT-CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATC
1 AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT-
* *
6102533 AAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTACAA-AAA
64 -AAATTTC-CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAAAAGAAA
6102593 AAAA
1 AAAA
6102597 TTATTCTTTC
Statistics
Matches: 219, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
115 1 0.00
116 50 0.23
117 9 0.04
118 7 0.03
119 38 0.17
120 3 0.01
121 9 0.04
122 98 0.45
123 4 0.02
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (121 bp):
AAAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAA
ATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTCCTTAAAAGAAA
Found at i:6103548 original size:13 final size:13
Alignment explanation
Indices: 6103530--6103554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6103520 TTTAAGCAAA
6103530 TAATTATTTCATT
1 TAATTATTTCATT
6103543 TAATTATTTCAT
1 TAATTATTTCAT
6103555 GTGGTTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTATTTCATT
Found at i:6103623 original size:34 final size:33
Alignment explanation
Indices: 6103584--6103664 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 33
6103574 ATCATTATTA
*
6103584 TTTTTTATTTTTTTAGATG-TCCTAAAA-TTATAT
1 TTTTTTATTTTTTT-GAAGAT-CTAAAATTTATAT
* *
6103617 TCTTTTTCTTTTTTTGAAGATCTAAAATTTTTAT
1 T-TTTTTATTTTTTTGAAGATCTAAAATTTATAT
6103651 TTTTTTATTTTTTT
1 TTTTTTATTTTTTT
6103665 TACTTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 22 0.54
34 19 0.46
ACGTcount: A:0.22, C:0.06, G:0.05, T:0.67
Consensus pattern (33 bp):
TTTTTTATTTTTTTGAAGATCTAAAATTTATAT
Found at i:6106751 original size:16 final size:16
Alignment explanation
Indices: 6106727--6106757 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6106717 TACAATTATC
*
6106727 TAAACAAATATTTAAA
1 TAAAAAAATATTTAAA
6106743 TAAAAAAATATTTAA
1 TAAAAAAATATTTAA
6106758 TTCCAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAAAATATTTAAA
Found at i:6113511 original size:2 final size:2
Alignment explanation
Indices: 6113501--6113529 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6113491 AAGGAGACAT
6113501 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6113530 CATTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6113994 original size:13 final size:13
Alignment explanation
Indices: 6113976--6114000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6113966 TTTAAGCAAA
6113976 TAATTATTTCATT
1 TAATTATTTCATT
6113989 TAATTATTTCAT
1 TAATTATTTCAT
6114001 GTGGTTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTATTTCATT
Found at i:6114069 original size:34 final size:32
Alignment explanation
Indices: 6114030--6114109 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 32
6114020 ATCATTATTA
*
6114030 TTTTTTATTTTTTTAGATG-TCCTAAAATTATAT
1 TTTTTTATTTTTTT-GAAGAT-CTAAAATTATAT
* *
6114063 TCTTTTTCTTTTTTTGAAGATCTAAAATTTTAT
1 T-TTTTTATTTTTTTGAAGATCTAAAATTATAT
6114096 TTTTTTATTTTTTT
1 TTTTTTATTTTTTT
6114110 TACTTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 12 0.29
33 16 0.39
34 13 0.32
ACGTcount: A:0.23, C:0.06, G:0.05, T:0.66
Consensus pattern (32 bp):
TTTTTTATTTTTTTGAAGATCTAAAATTATAT
Found at i:6114069 original size:35 final size:33
Alignment explanation
Indices: 6114025--6114109 Score: 93
Period size: 32 Copynumber: 2.5 Consensus size: 33
6114015 AGCAAATCAT
*
6114025 TATTATTTTTTATTTTTTTAGATG-TCCTAAAATTA
1 TATT-TTTTTTATTTTTTT-GAAGAT-CTAAAATTA
* * *
6114060 TATTCTTTTTCTTTTTTTGAAGATCTAAAATTT
1 TATTTTTTTTATTTTTTTGAAGATCTAAAATTA
6114093 TA-TTTTTTTATTTTTTT
1 TATTTTTTTTATTTTTTT
6114110 TACTTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 13 0.30
33 13 0.30
34 13 0.30
35 4 0.09
ACGTcount: A:0.24, C:0.06, G:0.05, T:0.66
Consensus pattern (33 bp):
TATTTTTTTTATTTTTTTGAAGATCTAAAATTA
Found at i:6116785 original size:14 final size:14
Alignment explanation
Indices: 6116745--6116790 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
6116735 ATAAATTTTA
*
6116745 TATAATTTTA-AAT
1 TATAATTTAATAAT
6116758 TATAA-TTAATTAAT
1 TATAATTTAA-TAAT
6116772 TATAATTTAATAAT
1 TATAATTTAATAAT
*
6116786 CATAA
1 TATAA
6116791 ATGATACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 3 0.11
13 5 0.18
14 16 0.57
15 4 0.14
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
TATAATTTAATAAT
Found at i:6117705 original size:16 final size:16
Alignment explanation
Indices: 6117681--6117711 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6117671 TACAATTATC
*
6117681 TAAACAAATATTTAAA
1 TAAAAAAATATTTAAA
6117697 TAAAAAAATATTTAA
1 TAAAAAAATATTTAA
6117712 TTCCAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAAAATATTTAAA
Found at i:6126812 original size:13 final size:13
Alignment explanation
Indices: 6126794--6126818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6126784 TTTAAGCAAA
6126794 TAATTATTTCATT
1 TAATTATTTCATT
6126807 TAATTATTTCAT
1 TAATTATTTCAT
6126819 GTGGTTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTATTTCATT
Done.